U.S. patent application number 16/105425 was filed with the patent office on 2018-12-20 for certain improved human bispecific egfrviii antibody engaging molecules.
The applicant listed for this patent is Duke University, THE GOVERNMENT OF THE UNITED STATES AS REPRESENTED BY THE SECRETARY OF HEALTH AND HUMAN SERVICES, THE GOVERNMENT OF THE UNITED STATES AS REPRESENTED BY THE SECRETARY OF HEALTH AND HUMAN SERVICES. Invention is credited to Darell D. Bigner, Mingqing Cai, Bryan D. Choi, Patrick C. Gedeon, Chien-Tsun Kuan, Ira H. Pastan, John Sampson.
Application Number | 20180362659 16/105425 |
Document ID | / |
Family ID | 52280577 |
Filed Date | 2018-12-20 |
United States Patent
Application |
20180362659 |
Kind Code |
A1 |
Bigner; Darell D. ; et
al. |
December 20, 2018 |
Certain Improved Human Bispecific EGFRvIII Antibody Engaging
Molecules
Abstract
We have constructed a polynucleotide encoding a bispecific
antibody engaging molecule which has one arm that specifically
engages a tumor cell which expresses the human EGFRvIII mutant
protein on its surface, and a second arm that specifically engages
T cell activation ligand CD3. The polynucleotide is codon optimized
for expression in CHO cells. The subunits of the engaging molecules
are organized to achieve greater efficiency. These are promising
therapeutic agents.
Inventors: |
Bigner; Darell D.; (Mebane,
NC) ; Sampson; John; (Durham, NC) ; Kuan;
Chien-Tsun; (Cary, NC) ; Cai; Mingqing;
(Durham, NC) ; Choi; Bryan D.; (Durham, NC)
; Gedeon; Patrick C.; (Durham, NC) ; Pastan; Ira
H.; (Potomac, MD) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
THE GOVERNMENT OF THE UNITED STATES AS REPRESENTED BY THE SECRETARY
OF HEALTH AND HUMAN SERVICES
Duke University |
Rockville
Durham |
MD
NC |
US
US |
|
|
Family ID: |
52280577 |
Appl. No.: |
16/105425 |
Filed: |
August 20, 2018 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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14903659 |
Jan 8, 2016 |
10053514 |
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PCT/US2014/046003 |
Jul 9, 2014 |
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16105425 |
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61844119 |
Jul 9, 2013 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C07K 2317/31 20130101;
C07K 2317/73 20130101; C07K 16/40 20130101; C07K 16/32 20130101;
C07K 16/2809 20130101; C07K 16/2863 20130101; C07K 2317/622
20130101; C07K 2317/56 20130101; A61P 35/00 20180101; A61K 2039/505
20130101 |
International
Class: |
C07K 16/32 20060101
C07K016/32; C07K 16/28 20060101 C07K016/28; C07K 16/40 20060101
C07K016/40 |
Goverment Interests
[0001] This invention was made using funds from the U.S.
government. The U.S. government retains certain rights in the
invention according to the terms of NIH/NCI grant no. CA11898.
Claims
1. A bispecific polypeptide, comprising: a first single chain human
variable region which binds to EGFRvIII, and comprises segments
encoded by SEQ ID NO: 5 and 6 in amino to carboxy order; in series
with a second single chain human variable region which binds to T
cell activation ligand CD3 and comprises segments encoded by SEQ ID
NO: 7 and 8 in amino to carboxy order; wherein the first and second
single chain human variable regions are in amino to carboxy
order.
2. The bispecific polypeptide of claim 1 which comprises segments
encoded by SEQ ID NOs: 5, 6, 10, 7, and 8, in amino to carboxy
order.
3. The bispecific polypeptide of claim 1 which comprises segments
encoded by SEQ ID NO: 5, 9, 6, 10, 7, 9, and 8, in amino to carboxy
order.
4. The bispecific polypeptide of claim 1 which comprises segments
encoded by SEQ ID NO: 4, 5, 9, 6, 10, 7, 9, and 8, in amino to
carboxy order.
5. A polynucleotide encoding the bispecific polypeptide of claim
1.
6. The polynucleotide of claim 5 comprising the sequence of SEQ ID
NO: 1.
7. A method of treating a patient with an EGFRvIII-expressing
tumor, comprising: administering the bispecific polypeptide of
claim 1 to the patient, whereby a cytolytic T cell response to the
tumor is induced.
8. The bispecific polypeptide of claim 1 wherein a spacer
polypeptide segment links the first and second single chain
variable regions.
9. The bispecific polypeptide of claim 8 wherein the spacer
polypeptide segment is (G.sub.4S).sub.n wherein n is 1-5.
10. The bispecific polypeptide of claim 1 wherein a spacer
polypeptide segment links V.sub.L and V.sub.H domains within the
first single chain variable region.
11. The bispecific polypeptide of claim 1 wherein a spacer
polypeptide segment links V.sub.H and V.sub.L domains within the
second single chain variable region.
12. The bispecific polypeptide of claim 10 wherein the spacer
polypeptide segment is (G.sub.4S).sub.n wherein n is 1-5.
13. The bispecific polypeptide of claim 11 wherein the spacer
polypeptide segment is (G.sub.4S).sub.n wherein n is 1-5.
14. The bispecific polypeptide of claim 1 wherein each single chain
variable region comprises a disulfide bond between the V.sub.H and
the V.sub.L domain.
15. A method of making a bispecific polypeptide comprising:
culturing a cell comprising the polynucleotide of claim 5 in a
culture medium and collecting the bispecific polypeptide from the
cells or culture medium.
16. A method of making a bispecific polypeptide comprising:
culturing a cell comprising the polynucleotide of claim 6 in a
culture medium and collecting the bispecific polypeptide from the
cells or culture medium.
Description
TECHNICAL FIELD OF THE INVENTION
[0002] This invention is related to the area of cancer therapy. In
particular, it relates to treating cancers that express EGFRvIII
and agents for doing the same.
BACKGROUND OF THE INVENTION
[0003] The most common primary malignant brain tumor, glioblastoma
multiforme (GBM), remains uniformly fatal despite surgical
resection, radiation therapy, and chemotherapy1 Immunotherapy
promises to induce robust, tumor-specific immune responses that
eliminate neoplastic cells with unparalleled specificity without
adding additional toxicity to multimodality therapy. Substantial
evidence supports the role of T-cells in the eradication of cancer.
Recently, the concept of using specific antibodies to re-direct
T-cells has been optimized in the form of recombinant bispecific
T-cell engaging molecules, or bispecific T-cell engaging molecules,
that consist of a tumor-targeting single-chain antibody connected
to a single-chain antibody directed against a Tcell activation
ligand such as CD3. These bispecific T cell engaging molecules can
tether T-cells to tumor cells, which results in a highly localized
and specific activation of T-cells with concomitant tumor cell
lysis. Recently, human trials using a CD19.times.CD3 bispecific T
cell engaging molecule confirmed the potency of these constructs by
tumor regression observed in 7/7 patients with non-Hodgkin's
lymphoma at a dose of only 0.06 mg/m2 with clearance of tumor from
the blood, bone marrow, and liver4. The most significant limitation
of these promising constructs, however, is the lack of
tumor-specific targets that are frequently and homogeneously
expressed.
[0004] Tumor-specific antigens derived from mutations in somatic
genes are less likely to be associated with autoimmunity, but often
arise randomly as a result of the genetic instability of tumors
and, as such, tend to be patient-specific and incidental to the
oncogenic process. EGFRvIII, however, is a frequent and consistent
tumor specific mutation, central to the neoplastic process, which
consists of an in-frame deletion of 801 base pairs from the
extracellular domain (ECD) of the EGFR that splits a codon and
produces a novel glycine at the fusion junction. This mutation
encodes a constitutively active tyrosine kinase that enhances
neoplastic cell growth and migration9 and confers radiation and
chemotherapeutic resistance to tumor cells. The EGFRvIII mutation
is most frequently seen in patients with GBM, but has been found in
a broad array of other common cancers. The new glycine inserted at
the fusion junction of normally distant parts of the ECD results in
a tumor-specific epitope that is not found in any normal
tissues.
[0005] There is a continuing need in the art to find better and
more successful treatments of cancers such as brain cancers.
SUMMARY OF THE INVENTION
[0006] One aspect of the invention is a bispecific polypeptide. The
bispecific polypeptide comprises a first human single chain
variable region which binds to EGFRvIII. The first single chain
variable region is in series in amino to carboxy order with a
second human single chain variable region. The second single chain
variable region binds to T cell activation ligand CD3. The first
single chain variable region comprises segments encoded by SEQ ID
NO: 5 and 6 in amino to carboxy order. The second single chain
variable region comprises segments encoded by SEQ ID NO: 7 and 8 in
amino to carboxy order.
[0007] Another aspect of the invention is a polynucleotide encoding
the bispecific polypeptide. The bispecific polypeptide comprises a
first human single chain variable region which binds to EGFRvIII.
The first single chain variable region is in series in amino to
carboxy order with a second human single chain variable region. The
second single chain variable region binds to T cell activation
ligand CD3. The first single chain variable region comprises
segments encoded by SEQ ID NO: 5 and 6 in amino to carboxy order.
The second single chain variable region comprises segments encoded
by SEQ ID NO: 7 and 8 in amino to carboxy order. A particular
polynucleotide encoding the bispecific polypeptide is shown in SEQ
ID NO: 1.
[0008] Another aspect of the invention is a method of treating an
EGFRvIII-expressing tumor in a patient. The bispecific polypeptide
is administered to the patient, whereby a cytolytic T cell response
to the tumor is induced. The bispecific polypeptide comprises a
first human single chain variable region which binds to EGFRvIII.
The first single chain variable region is in series in amino to
carboxy order with a second human single chain variable region. The
second single chain variable region binds to T cell activation
ligand CD3. The first single chain variable region comprises
segments encoded by SEQ ID NO: 5 and 6 in amino to carboxy order.
The second single chain variable region comprises segments encoded
by SEQ ID NO: 7 and 8 in amino to carboxy order.
[0009] Still another aspect of the invention is a method of making
the bispecific polypeptide. A cell is cultured in a culture medium.
The cell comprises a polynucleotide encoding the bispecific
polypeptide. The bispecific polypeptide comprises a first human
single chain variable region which binds to EGFRvIII. The first
single chain variable region is in series in amino to carboxy order
with a second human single chain variable region. The second single
chain variable region binds to T cell activation ligand CD3. The
first single chain variable region comprises segments encoded by
SEQ ID NO: 5 and 6 in amino to carboxy order. The second single
chain variable region comprises segments encoded by SEQ ID NO: 7
and 8 in amino to carboxy order. After culturing, the bispecific
polypeptide is harvested from the cells or from the culture
medium.
[0010] These and other embodiments which will be apparent to those
of skill in the art upon reading the specification provide the art
with
DETAILED DESCRIPTION OF THE INVENTION
[0011] The inventors have developed human bispecific T cell
engaging molecules which target both the EGFRvIII and T cell
activation ligand CD3. They have been found to recruit cytotoxic T
cells to a cancer cell expressing EGFRvIII and activate cytotoxic T
cells, thereby killing the cancer cell expressing the EGFRvIII
molecule. The bispecific T cell engaging molecules are selectively
reactive with EGFRvIII and T cell activation ligand CD3 displayed
on the surface of mammalian cells which are accessible to the
antibody from the extracellular milieu. Of particular note are
human bispecific T cell engaging molecules in which the V.sub.L
segment precedes the V.sub.H segment of the variable region which
binds to EGFRvIII. Of additional note are fusion proteins that
contain a signal peptide. Moreover, polynucleotides that encode the
human bispecific T cell engaging molecules may be codon optimized
for expression in Chinese Hamster Ovary (CHO) cells.
[0012] Fusion proteins that are human bispecific T cell engaging
molecules may or may not contain linker molecules between
individual variable domains and between variable regions. The
linker may be selected from those shown in SEQ ID NO: 9 and 10, or
those which have a different number of monomers as shown in SEQ ID
NO: 10, ranging from 1-5, 5-10 or 1-10. Other linkers as are known
in the art may be used as well.
[0013] A signal sequence can be used at the amino terminal end of
the fusion protein to facilitate secretion of the human bispecific
T cell engaging molecules from the producing cells in culture.
Secretion is advantageous as it avoids the need to break cells to
harvest the fusion protein product from the cells. While the signal
sequence shown in SEQ ID NO: 4 has been shown to successfully guide
secretion of the human bispecific T cell engaging molecules, other
signal sequences known in the art may be used as alternatives.
[0014] Although the nucleic acid encoding the human bispecific T
cell engaging molecules shown in SEQ ID NO: 1 has been codon
optimized for CHO cells, the same human bispecific T cell engaging
molecules can be made from other nucleic acids which encode the
same amino acids but use different codons. These may be optimized
for production in different cell lines or in different animal
systems in vivo.
[0015] Although the order of the variable domains presented in SEQ
ID NO: 1, 2, and 3 appears to be highly efficient, other orders of
the variable domains may be used to achieve other human bispecific
T cell engaging molecules, which may share certain properties but
have other beneficial properties that are unique. For example,
production may be optimized with one order of domains, whereas
avidity or cytotoxicity may be optimized with another order.
Possible orders of the variable domains include: SEQ ID NO: 5, 6,
7, 8; SEQ ID NO: 8, 7, 6, 5; SEQ ID NO: 6, 5, 7, 8; SEQ ID NO: 5,
6, 8, 7; SEQ ID NO: 8, 7, 5, 6; and SEQ ID NO: 6, 5, 8, 7. Linkers
may be used between any of these segments. Signal sequences may
precede N-terminally any of these sequences of domains.
[0016] Many types of bispecific antibodies can be constructed and
used. These include, without limitation, quadroma-derived F(ab')2,
heterodimeric scFv, heterodimeric Fab, diabodies, tandem diabodies,
and tandem scFv molecules. Bispecific antibodies can also be made
using trifunctional antibodies, i.e., antibodies that have a third
specificity as well as the initial two for EGFRvIII and a T cell
activation ligand. The many forms are well known in the art.
[0017] Once bispecific T cell engaging molecules have been
constructed, they can be produced in recombinant cells. Any
suitable cell type can be used. If the bispecific T cell engaging
molecules are secreted, they can be harvested from the culture
medium. If they remain intracellular, the cells can be collected
and broken under suitable conditions to harvest the bispecific T
cell engaging molecules from the appropriate cell fraction. Any
convenient cell host can be used for producing the bispecific T
cell engaging molecules, including bacteria, yeast, insect cells,
plant cells, algal cells, mammalian cells. In one scenario, the
bispecific T cell engaging molecules can be produced in stably
transfected CHO cells and the supernatant will contain the produced
bispecific T cell engaging molecules.
[0018] Any tumor which expresses EGFRvIII can be targeted and
treated with the bispecific T cell engaging molecules. Tumors which
have been found to express the EGFRvIII antigen include brain
tumors such as glioblastoma multiforme, breast tumors, and lung
tumors. Any of these or other tumors can be targeted if it
expresses the mutant antigen.
Definitions
[0019] Units, prefixes, and symbols are denoted in their Systeme
International de Unites (SI) accepted form. Numeric ranges are
inclusive of the numbers defining the range. Unless otherwise
indicated, nucleic acids are written left to right in 5' to 3'
orientation; amino acid sequences are written left to right in
amino to carboxy orientation. The headings provided herein are not
limitations of the various aspects or embodiments of the disclosure
which can be had by reference to the specification as a whole.
Accordingly, the terms defined immediately below are more fully
defined by reference to the specification in its entirety.
[0020] "EGFRvIII" means a mutant form of the epidermal growth
factor receptor recognized by MR1 scFv and characterized by an 801
base pair in frame deletion of exons 2 to 7 near the amino
terminal. This form of the receptor is known in the art, as
exemplified by the Wickstrand et al., Moscatello et al., and
Lorimer et al. references cited in the Background. Due to a change
in terminology, EGFRvIII was originally termed a Type II mutation
in some earlier work in the field, as exemplified by U.S. Pat. No.
5,212,290.
[0021] The term "CD3" refers to the protein complex associated with
the T cell receptor. Antibodies directed against CD3 are able to
generate an activation signal in T lymphocytes. Other T cell
activation ligands can be used as well, including without
limitation CD28, CD134, CD137, and CD27.
[0022] As used herein, "antibody" includes reference to an
immunoglobulin molecule immunologically reactive with a particular
antigen, and includes both polyclonal and monoclonal antibodies.
The term also includes genetically engineered forms such as
chimeric antibodies (e.g., humanized murine antibodies),
heteroconjugate antibodies (e.g., bispecific antibodies) and
recombinant single chain Fv fragments (scFv), disulfide stabilized
(dsFv) Fv fragments (See, U.S. Ser. No. 08/077,252, incorporated
herein by reference), or pFv fragments (See, U.S. Provisional
Patent Applications 60/042,350 and 60/048,848, both of which are
incorporated herein by reference.). The term "antibody" also
includes antigen binding forms of antibodies (e.g., Fab', F(ab')2,
Fab, Fv and rIgG (See also, Pierce Catalog and Handbook, 1994-1995
(Pierce Chemical Co., Rockford, Ill.).
[0023] An antibody immunologically reactive with a particular
antigen can be generated by recombinant methods such as selection
of libraries of recombinant antibodies in phage or similar vectors
(See, e.g., Huse, et al., Science 246:1275-1281 (1989); Ward, et
al., Nature 341:544-546 (1989); and Vaughan, et al., Nature
Biotech. 14:309-314 (1996)).
[0024] Typically, an immunoglobulin has a heavy and light chain.
Each heavy and light chain contains a constant region and a
variable region. Light and heavy chain variable regions contain a
"framework" region interrupted by three hypervariable regions, also
called complementarity-determining regions or CDRs. The extent of
the framework region and CDRs have been defined (see, SEQUENCES OF
PROTEINS OF IMMUNOLOGICAL INTEREST, Kabat, E., et al., U.S.
Department of Health and Human Services, (1987); which is
incorporated herein by reference). The sequences of the framework
regions of different light or heavy chains are relatively conserved
within a species. The framework region of an antibody, that is the
combined framework regions of the constituent light and heavy
chains, serves to position and align the CDRs in three dimensional
space. The CDRs are primarily responsible for binding to an epitope
of an antigen. The CDRs are typically referred to as CDR1, CDR2,
and CDR3, numbered sequentially starting from the N-terminus.
[0025] The phrase "single chain Fv" or "scFv" refers to an antibody
in which the heavy chain and the light chain of a traditional two
chain antibody have been joined to form one chain. Typically, a
linker peptide is inserted between the two chains to allow for
proper folding and creation of an active binding site.
[0026] The term "linker peptide" includes reference to a peptide
within an antibody binding fragment (e.g., Fv fragment) which
serves to indirectly bond the variable heavy chain to the variable
light chain. The linker may be a series of a single amino acid or
an alternating pattern of amino acids, for example.
[0027] The term "contacting" includes reference to placement in
direct physical association. With regards to this invention, the
term refers to antibody-antigen binding.
[0028] As used herein, the term "bispecific T-cell engaging
molecule" refers to a molecule designed to harness a subject's T
cells to kill cancer cells by targeting to the tumor cells
expressing a desired molecule. In certain embodiments, the desired
molecule is human EGFRvIII. In other embodiments, the bispecific T
cell engaging molecules comprises two Fv domains. In other
embodiments, the bispecific T cell engaging molecule comprises a
first Fv domain directed to EGFRvIII and a second Fv domain
directed to CD3. The Fv domains may be scFv domains.
[0029] The term "selectively reactive" includes reference to the
preferential association of an antibody, in whole or part, with a
cell or tissue bearing EGFRvIII or CD3 and not to cells or tissues
lacking EGFRvIII or CD3. It is, of course, recognized that a
certain degree of non-specific interaction may occur between a
molecule and a non-target cell or tissue. Nevertheless, selective
reactivity, may be distinguished as mediated through specific
recognition of EGFRvIII and CD3. Although selectively reactive
antibodies bind antigen, they may do so with low affinity. On the
other hand, specific binding results in a much stronger association
between the antibody and cells bearing EGFRvIII or CD3 than between
the bound antibody and cells lacking EGFRvIII or CD3 or low
affinity antibody-antigen binding. Specific binding typically
results in greater than 2-fold, preferably greater than 5-fold,
more preferably greater than 10-fold and most preferably greater
than 100-fold increase in amount of bound antibody (per unit time)
to a cell or tissue bearing EGFRvIII or CD3 as compared to a cell
or tissue lacking EGFRvIII or CD3. Specific binding to a protein
under such conditions requires an antibody that is selected for its
specificity for a particular protein. A variety of immunoassay
formats are appropriate for selecting antibodies specifically
immunoreactive with a particular protein. For example, solid-phase
ELISA immunoassays are routinely used to select monoclonal
antibodies specifically immunoreactive with a protein. See Harlow
& Lane, ANTIBODIES, A LABORATORY MANUAL, Cold Spring Harbor
Publications, New York (1988), for a description of immunoassay
formats and conditions that can be used to determine specific
immunoreactivity. In some embodiments of the invention the antibody
will bind to EGFRvIII better than to wild-type EGFR. In some
instances an antibody will bind to both. The differential binding
may be reflected in a stronger binding, or in a faster binding, or
in more binding to a fixed amount of antigen with a fixed amount of
time. The better binding may be by a factor of at least 2, 4, 6, 8,
or 10. Under some disease conditions, it may be advantageous to
have some degree of binding to both mutant and wild-type forms of
EGFR, for example where both forms are co-expressed on a tumor
target. Under other disease situations, it may be desirable to have
the maximum amount of specify available for the mutant form, for
example, to reduce adverse side effects.
[0030] As used herein, "polypeptide," "peptide," and "protein" are
used interchangeably and include reference to a polymer of amino
acid residues. The terms apply to amino acid polymers in which one
or more amino acid residue is an artificial chemical analogue of a
corresponding naturally occurring amino acid, as well as to
naturally occurring amino acid polymers. The terms also apply to
polymers containing conservative amino acid substitutions such that
the protein remains functional.
[0031] The term "residue" or "amino acid residue" or "amino acid"
includes reference to an amino acid that is incorporated into a
protein, polypeptide, or peptide (collectively "peptide"). The
amino acid can be a naturally occurring amino acid and, unless
otherwise limited, can encompass known analogs of natural amino
acids that can function in a similar manner as naturally occurring
amino acids.
[0032] The phrase "disulfide bond" or "cysteine-cysteine disulfide
bond" refers to a covalent interaction between two cysteines in
which the sulfur atoms of the cysteines are oxidized to form a
disulfide bond. The average bond energy of a disulfide bond is
about 60 kcal/mol compared to 1-2 kcal/mol for a hydrogen bond. In
the context of this invention, the cysteines which form the
disulfide bond are within the framework regions of the single chain
antibody and serve to stabilize the conformation of the antibody.
Cysteine residues can be introduced, e.g., by site directed
mutagenesis, so that stabilizing disulfide bonds can be made within
the molecule.
[0033] As used herein, "recombinant" includes reference to a
protein produced using cells that do not have, in their native
state, an endogenous copy of the DNA able to express the protein.
The cells produce the recombinant protein because they have been
genetically altered by the introduction of the appropriate isolated
nucleic acid sequence. The term also includes reference to a cell,
or nucleic acid, or vector, that has been modified by the
introduction of a heterologous nucleic acid or the alteration of a
native nucleic acid to a form not native to that cell, or that the
cell is derived from a cell so modified. Thus, for example,
recombinant cells express genes that are not found within the
native (non-recombinant) form of the cell, express mutants of genes
that are found within the native form, or express native genes that
are otherwise abnormally expressed, under expressed or not
expressed at all.
[0034] As used herein, "nucleic acid" or "nucleic acid sequence"
includes reference to a deoxyribonucleotide or ribonucleotide
polymer in either single- or double-stranded form, and unless
otherwise limited, encompasses known analogues of natural
nucleotides that hybridize to nucleic acids in a manner similar to
naturally occurring nucleotides. Unless otherwise indicated, a
particular nucleic acid sequence includes the complementary
sequence thereof as well as conservative variants, i.e., nucleic
acids present in wobble positions of codons and variants that, when
translated into a protein, result in a conservative substitution of
an amino acid.
[0035] As used herein, "encoding" with respect to a specified
nucleic acid, includes reference to nucleic acids which comprise
the information for translation into the specified protein. The
information is specified by the use of codons. Typically, the amino
acid sequence is encoded by the nucleic acid using the "universal"
genetic code. However, variants of the universal code, such as is
present in some plant, animal, and fungal mitochondria, the
bacterium Mycoplasma capricolum (Proc. Nat'l Acad. Sci. USA
82:2306-2309 (1985), or the ciliate Macronucleus, may be used when
the nucleic acid is expressed in using the translational machinery
of these organisms. Any codon for an amino acid may be substituted
for another codon for the same amino acid without changing the
encoded protein. Translation efficiency may, however, be
modified.
[0036] The phrase "fusing in frame" refers to joining two or more
nucleic acid sequences which encode polypeptides so that the joined
nucleic acid sequence translates into a single chain protein which
comprises the original polypeptide chains.
[0037] As used herein, "expressed" includes reference to
translation of a nucleic acid into a protein. Proteins may be
expressed and remain intracellular, become a component of the cell
surface membrane or be secreted into the extracellular matrix or
medium.
[0038] By "host cell" is meant a cell which can support the
replication or expression of the expression vector. Host cells may
be prokaryotic cells such as E. coli, or eukaryotic cells such as
yeast, insect, amphibian, or mammalian cells.
[0039] The phrase "phage display library" refers to a population of
bacteriophage, each of which contains a foreign cDNA recombinantly
fused in frame to a surface protein. The phage displays the foreign
protein encoded by the cDNA on its surface. After replication in a
bacterial host, typically E. coli, the phage which contain the
foreign cDNA of interest are selected by the expression of the
foreign protein on the phage surface.
[0040] "Sequence identity" in the context of two nucleic acid or
polypeptide sequences includes reference to the nucleotides (or
residues) in the two sequences which are the same when aligned for
maximum correspondence over a specified comparison window. When
percentage of sequence identity is used in reference to proteins it
is recognized that residue positions which are not identical often
differ by conservative amino acid substitutions, where amino acid
residues are substituted for other amino acid residues with similar
chemical properties (e.g., charge or hydrophobicity) and therefore
do not change the functional properties of the molecule. Where
sequences differ in conservative substitutions, the percent
sequence identity may be adjusted upwards to correct for the
conservative nature of the substitution. Means for making this
adjustment are well known to those of skill in the art. Typically
this involves scoring a conservative substitution as a partial
rather than a full mismatch, thereby increasing the percentage
sequence identity. Thus, for example, where an identical amino acid
is given a score of 1 and a non-conservative substitution is given
a score of zero, a conservative substitution is given a score
between zero and 1. The scoring of conservative substitutions is
calculated, e.g., according to the algorithm of Meyers &
Miller, Computer Applic. Biol. Sci. 4:11-17 (1988), e.g., as
implemented in the program PC/GENE (Intelligenetics, Mountain View,
Calif., USA). An indication that two peptide sequences are
substantially similar is that one peptide is immunologically
reactive with antibodies raised against the second peptide. Thus, a
peptide is substantially similar to a second peptide, for example,
where the two peptides differ only by a conservative
substitution.
[0041] A "comparison window," as used herein, includes reference to
a segment of about 10-20 residues in which a sequence may be
compared to a reference sequence of the same number of contiguous
positions after the two sequences are optimally aligned. Methods of
alignment of sequences for comparison are well known in the art.
Optimal alignment of sequences for comparison may be conducted by
the local homology algorithm of Smith & Waterman, Adv. Appl.
Math. 2:482 (1981); by the homology alignment algorithm of
Needleman & Wunsch, J. Mol. Biol. 48:443 (1970); by the search
for similarity method of Pearson & Lipman, Proc. Nat'l Acad.
Sci. USA 85:2444 (1988); by computerized implementations of these
algorithms (including, but not limited to CLUSTAL in the PC/Gene
program by Intelligenetics, Mountain View, Calif., GAP, BESTFIT,
BLAST, FASTA, and TFASTA in the Wisconsin Genetics Software
Package, Genetics Computer Group (GCG), Madison, Wis., USA); the
CLUSTAL program is well described by Higgins & Sharp, Gene
73:237-244 (1988) and Higgins & Sharp, CABIOS 5:151-153 (1989);
Corpet, et al., Nucl. Acids Res. 16:10881-90 (1988); Huang, et al.,
Computer Applications in the Biosciences 8:155-65 (1992); and
Pearson, et al., Meth. in Molec. Biol. 24:307-31 (1994).
[0042] The terms "effective amount" or "amount effective to" or
"therapeutically effective amount" include reference to a dosage of
a therapeutic agent sufficient to produce a desired result, such as
inhibiting cell protein synthesis by at least 50%, or killing the
cell.
[0043] The term "therapeutic agent" includes any number of
compounds currently known or later developed to act as
anti-neoplastics, anti-inflammatories, cytokines, anti-infectives,
enzyme activators or inhibitors, allosteric modifiers, antibiotics
or other agents administered to induce a desired therapeutic effect
in a patient.
[0044] The term "in vivo" includes reference to inside the body of
the organism from which the cell was obtained. "Ex vivo" and "in
vitro" means outside the body of the organism from which the cell
was obtained.
[0045] Once the nucleic acids encoding a bispecific T cell engaging
molecule of the present disclosure are isolated and cloned, one may
express the desired protein in a recombinantly engineered cell such
as bacteria, plant, yeast, insect, and mammalian cells. It is
expected that those of skill in the art are knowledgeable in the
numerous expression systems available for expression of proteins
including E. coli, other bacterial hosts, yeast, and various higher
eucaryotic cells such as the COS, CHO, HeLa and myeloma cell lines.
No attempt to describe in detail the various methods known for the
expression of proteins in prokaryotes or eukaryotes will be made.
In brief, the expression of natural or synthetic nucleic acids
encoding the isolated proteins of the invention will typically be
achieved by operably linking the DNA or cDNA to a promoter (which
is either constitutive or inducible), followed by incorporation
into an expression cassette. The cassettes can be suitable for
replication and integration in either prokaryotes or eukaryotes.
Typical expression cassettes contain transcription and translation
terminators, initiation sequences, and promoters useful for
regulation of the expression of the DNA encoding the protein. To
obtain high level expression of a cloned gene, it is desirable to
construct expression cassettes which contain, at the minimum, a
strong promoter to direct transcription, a ribosome binding site
for translational initiation, and a transcription/translation
terminator. For E. coli this includes a promoter such as the T7,
trp, lac, or lambda promoters, a ribosome binding site and
preferably a transcription termination signal. For eukaryotic
cells, the control sequences can include a promoter and preferably
an enhancer derived from immunoglobulin genes, SV40,
cytomegalovirus, and a polyadenylation sequence, and may include
splice donor and acceptor sequences. The cassettes of the invention
can be transferred into the chosen host cell by well-known methods
such as calcium chloride transformation or electroporation for E.
coli and calcium phosphate treatment, electroporation or
lipofection for mammalian cells. Cells transformed by the cassettes
can be selected by resistance to antibiotics conferred by genes
contained in the cassettes, such as the amp, gpt, neo and hyg
genes. It is also contemplated that the DNA can be delivered to a
recipient patient, for example, on nanoparticles or other DNA
delivery system, and that the patient may produce her own
bispecific T-cell engaging molecules in vivo.
[0046] One of skill would recognize that modifications can be made
to a nucleic acid encoding a polypeptide of the present disclosure
(i.e., anti-EGFRvIII or anti-CD3) without diminishing its
biological activity. Some modifications may be made to facilitate
the cloning, expression, or incorporation of the targeting molecule
into a fusion protein. Such modifications are well known to those
of skill in the art and include, for example, a methionine added at
the amino terminus to provide an initiation site, or additional
amino acids (e.g., poly His) placed on either terminus to create
conveniently located restriction sites or termination codons or
purification sequences.
[0047] The phrase "malignant cell" or "malignancy" refers to tumors
or tumor cells that are invasive and/or able to undergo metastasis,
i.e., a cancerous cell.
[0048] In addition to recombinant methods, the bispecific T cell
engaging molecules of the present disclosure can also be
constructed in whole or in part using standard peptide synthesis.
Solid phase synthesis of the polypeptides of the present invention
of less than about 50 amino acids in length may be accomplished by
attaching the C-terminal amino acid of the sequence to an insoluble
support followed by sequential addition of the remaining amino
acids in the sequence. Techniques for solid phase synthesis are
described by Barany & Merrifield, THE PEPTIDES: ANALYSIS,
SYNTHESIS, BIOLOGY. VOL. 2: SPECIAL METHODS IN PEPTIDE SYNTHESIS,
PART A. pp. 3-284; Merrifield, et al. J. Am. Chem. Soc.
85:2149-2156 (1963), and Stewart, et al., SOLID PHASE PEPTIDE
SYNTHESIS, 2ND ED., Pierce Chem. Co., Rockford, Ill. (1984).
Proteins of greater length may be synthesized by condensation of
the amino and carboxyl termini of shorter fragments. Methods of
forming peptide bonds by activation of a carboxyl terminal end
(e.g., by the use of the coupling reagent
N,N'-dicycylohexylcarbodiimide) are known to those of skill.
[0049] In addition to redirecting T-cells to tumor-specific
antigens, the bispecific T cell engaging molecules can also be used
to carry other diagnostic or therapeutic compounds to cells
expressing EGFRvIII on their surface. Thus, a bispecific T cell
engaging molecule may be attached directly or indirectly, e.g., via
a linker, to a drug so that it will be delivered directly to cells
bearing EGFRvIII. Therapeutic agents include such compounds as
nucleic acids, proteins, peptides, amino acids or derivatives,
glycoproteins, radioisotopes, lipids, carbohydrates, or recombinant
viruses. Nucleic acid therapeutic and diagnostic moieties include
antisense nucleic acids, derivatized oligonucleotides for covalent
cross-linking with single or duplex DNA, and triplex forming
oligonucleotides.
[0050] Alternatively, the molecule linked to the bispecific T cell
engaging molecule may be an encapsulation system, such as a
liposome or micelle that contains a therapeutic composition such as
a drug, a nucleic acid (e.g. an antisense nucleic acid), or another
therapeutic moiety that is preferably shielded from direct exposure
to the circulatory system. Means of preparing liposomes attached to
antibodies are well known to those of skill in the art. See, for
example, U.S. Pat. No. 4,957,735; and Connor, et al., Pharm. Ther.
28:341-365 (1985).
[0051] The bispecific T cell engaging molecules of this disclosure
are particularly useful for parenteral administration, such as
intravenous administration or administration into a body cavity or
lumen of an organ. For example, ovarian malignancies may be treated
by intravenous administration or by localized delivery to the
tissue surrounding the tumor. For treatment of tumors in the brain,
the molecules may be delivered directly to the brain, for example
by injection or the molecules can be administered intravenously and
then cross the blood brain barrier.
[0052] The compositions for administration will commonly comprise a
solution of the bispecific T cell engaging molecules dissolved in a
pharmaceutically acceptable carrier, preferably an aqueous carrier.
A variety of aqueous carriers can be used, e.g., buffered saline
and the like. These solutions are sterile and generally free of
undesirable matter. These compositions may be sterilized by
conventional, well known sterilization techniques. The compositions
may contain pharmaceutically acceptable auxiliary substances as
required to approximate physiological conditions such as pH
adjusting and buffering agents, toxicity adjusting agents and the
like, for example, sodium acetate, sodium chloride, potassium
chloride, calcium chloride, sodium lactate and the like. The
concentration of fusion protein in these formulations can vary
widely, and will be selected primarily based on fluid volumes,
viscosities, body weight and the like in accordance with the
particular mode of administration selected and the patient's
needs.
[0053] Thus, a typical pharmaceutical composition of the present
invention for intravenous administration would be about 0.1 to 10
mg per patient per day. Dosages from 0.1 up to about 100 mg per
patient per day may be used, particularly if the drug is
administered to a secluded site and not into the circulatory or
lymph system, such as into a body cavity or into a lumen of an
organ. Actual methods for preparing administrable compositions will
be known or apparent to those skilled in the art and are described
in more detail in such publications as REMINGTON'S PHARMACEUTICAL
SCIENCE, 19TH ED., Mack Publishing Company, Easton, Pa. (1995).
[0054] The compositions of the present invention can be
administered for therapeutic treatments. In therapeutic
applications, compositions are administered to a patient suffering
from a disease, in an amount sufficient to cure or at least
partially arrest the disease and its complications. An amount
adequate to accomplish this is defined as a "therapeutically
effective dose." Amounts effective for this use will depend upon
the severity of the disease and the general state of the patient's
health. An effective amount of the compound is that which provides
either subjective relief of a symptom(s) or an objectively
identifiable improvement as noted by the clinician or other
qualified observer.
[0055] Single or multiple administrations of the compositions are
administered depending on the dosage and frequency as required and
tolerated by the patient. In any event, the composition should
provide a sufficient quantity of the proteins of this invention to
effectively treat the patient. Preferably, the dosage is
administered once but may be applied periodically until either a
therapeutic result is achieved or until side effects warrant
discontinuation of therapy. Generally, the dose is sufficient to
treat or ameliorate symptoms or signs of disease without producing
unacceptable toxicity to the patient.
[0056] Controlled release parenteral formulations of the
pharmaceutical compositions of the present disclosure can be made
as implants, oily injections, or as particulate systems. For a
broad overview of protein delivery systems see, Banga, A. J.,
THERAPEUTIC PEPTIDES AND PROTEINS: FORMULATION, PROCESSING, AND
DELIVERY SYSTEMS, Technomic Publishing Company, Inc., Lancaster,
Pa., (1995) incorporated herein by reference. Particulate systems
include microspheres, microparticles, microcapsules, nanocapsules,
nanospheres, and nanoparticles. Microcapsules contain the
therapeutic protein as a central core. In microspheres the
therapeutic is dispersed throughout the particle. Particles,
microspheres, and microcapsules smaller than about 1 m are
generally referred to as nanoparticles, nanospheres, and
nanocapsules, respectively. Capillaries have a diameter of
approximately 5 m so that only nanoparticles are administered
intravenously. Microparticles are typically around 100 m in
diameter and are administered subcutaneously or intramuscularly.
See, e.g., Kreuter, J., COLLOIDAL DRUG DELIVERY SYSTEMS, J.
Kreuter, ed., Marcel Dekker, Inc., New York, N.Y., pp. 219-342
(1994); and Tice & Tabibi, TREATISE ON CONTROLLED DRUG
DELIVERY, A. Kydonieus, ed., Marcel Dekker, Inc. New York, N.Y.,
pp. 315-339 (1992) both of which are incorporated herein by
reference.
[0057] Polymers can be used for ion-controlled release of
pharmaceutical compositions of the present invention. Various
degradable and nondegradable polymeric matrices for use in
controlled drug delivery are known in the art (Langer, R., Accounts
Chem. Res. 26:537-542 (1993)). For example, the block copolymer,
polaxamer 407 exists as a viscous yet mobile liquid at low
temperatures but forms a semisolid gel at body temperature. It has
shown to be an effective vehicle for formulation and sustained
delivery of recombinant interleukin-2 and urease (Johnston, et al.,
Pharm. Res. 9:425-434 (1992); and Pec, et al., J. Parent. Sci.
Tech. 44(2):58-65 (1990)). Alternatively, hydroxyapatite has been
used as a microcarrier for controlled release of proteins (Ijntema,
et al., Int. J. Pharm. 112:215-224 (1994)). In yet another aspect,
liposomes are used for controlled release as well as drug targeting
of the lipid-capsulated drug (Betageri, et at., LIPOSOME DRUG
DELIVERY SYSTEMS, Technomic Publishing Co., Inc., Lancaster, Pa.
(1993)). Numerous additional systems for controlled delivery of
therapeutic proteins are known. See, e.g., U.S. Pat. Nos.
5,055,303, 5,188,837, 4,235,871, 4,501,728, 4,837,028 4,957,735 and
5,019,369, 5,055,303; 5,514,670; 5,413,797; 5,268,164; 5,004,697;
4,902,505; 5,506,206, 5,271,961; 5,254,342 and 5,534,496, each of
which is incorporated herein by reference.
[0058] Among various uses of the bispecific T cell engaging
molecules of the present invention are included a variety of
disease conditions caused by specific human cells that may be
eliminated by the toxic action of the fusion protein. One preferred
application for the bispecific T cell engaging molecules of the
invention is the treatment of malignant cells expressing EGFRvIII.
Exemplary malignant cells include astrocytomas, glioblastomas,
melanoma and the like.
[0059] As used herein, "mammalian cells" includes reference to
cells derived from mammals including humans, rats, mice, guinea
pigs, chimpanzees, or macaques. The cells may be cultured in vivo
or in vitro.
[0060] The above disclosure generally describes the present
invention. All references disclosed herein are expressly
incorporated by reference. A more complete understanding can be
obtained by reference to the following specific examples which are
provided herein for purposes of illustration only, and are not
intended to limit the scope of the invention.
EXAMPLES
Example 1
[0061] We constructed the molecule MR1-1XaCD3, which consists of
MR1-1, the murine anti-human EGFRvIII single-chain Fv, and aCD3,
the murine anti-human CD3 single-chain Fv. MR1-1XaCD3 was expressed
in and purified from bacteria BL21 (DE3), and the activity of this
double function molecule was confirmed by FACS showing its specific
binding to EGFRvIII-expressing cell lines, as well as human T
cells. The cytotoxicity of MR1-1XaCD3 on EGFRvIII-expressing GBM
D54MG.EGFRvIII cell lines was measured in vitro by standard
chromium release assay. The efficacy of MR1-1XaCD3 was evaluated in
NOD/SCID gamma mice where human EGFRvIII-expressing cell lines were
implanted. Our results showed that the MR1-1.times.aCD3 construct
is highly cytotoxic and antigen-specific, with an 8-fold increase
in specific lysis for D54MG.EGFRvIII over the wild-type control. In
a subcutaneous model, tumor growth was inhibited at a dose
dependent manner. While total inhibition was achieved at the 100
mcg/mouse/day, low dose might work effectively upon optimization.
In summary, our experiments showed that a human EGFRvIII-specific
T-cell engaging molecules, MR1-1XaCD3, is effective on
EGFRvIII-expressing tumor.
[0062] A murine MAb scFv MR1-1, specific for EGFRvIII, has been
demonstrated to be a suitable vehicle for GBM treatment in the
format of recombinant immunotoxins, which is now in a clinical
trial at our institution (BB-IND-12,589). However, the innate
properties of murine-derived antibodies might induce neutralizing
antibodies that limit their wider application. Therefore, fully
human MAbs are more desirable for the construction of recombinant
bispecific T cell engaging molecules for clinical trials.
[0063] To obtain high-affinity human anti-EGFRvIII MAbs and scFvs
we will (1) fuse EGFRvIII-specific B-cells to the HMMA2.5
non-secreting myeloma partner using an electrofusion technique or
(2) clone the variable heavy and light chains from DNA libraries
prepared from the antibody-secreting B-cell clones derived directly
from GBM patients who have been vaccinated with an
EGFRvIII-specific epitope.
[0064] In the context of an ongoing clinical trial in these
patients, we have shown that vaccination with an EGFRvIII-specific
peptide (PEPvIII) induced high-titer antibodies specific to
EGFRvIII in 32 of 43 patients, with some patients developing titers
>1:2,000,000. Production of high-affinity EGFRvIII-specific
antibodies with an average of 6 nM (KD) was confirmed by analyzing
EGFRvIII ECD using BIAcore SPR analysis.
[0065] It has often been challenging to clone MAbs directly from
human B cells in an efficient way. In our preliminary results, the
supernatant derived from human B-cells of a vaccinated GBM patient
(ACT 11-18) after stimulation with PEPvIII demonstrated positive
reactivity on EGFRvIII transfected cells (NR6M) and wild-type
EGFRwt transfectants (NR6W) at later days. With samples from our
patients, we were able to transform B-cells with Epstein-Barr virus
(EBV), and we demonstrated that these cells maintain their ability
to secrete high-titer, EGFRvIII-specific antibodies after peptide
stimulation for prolonged periods of at least 2 weeks. In our pilot
studies, three out of four patient samples have been successfully
transformed and demonstrated high-titer and high-affinity antibody
production.
Example 2
[0066] To construct a recombinant bispecific T cell engaging
molecule based on these human EGFRvIII-specific scFvs, we will
subclone the human anti-EGFRvIII scFvs into an existing cassette,
which we previously used to create an MR1-1.times.CD3 molecule, by
substituting the MR1-1scFv portion. Mouse anti-human CD3 scFv was
cloned from a hybridoma line OKT3 (ATCC, CRL 8001). MR1-1
bispecific T cell engaging protein after purification was shown in
SDS-PAGE gel, with a molecular weight of 55 kDa. The MR1-1
bispecific T cell engaging molecule binds to EGFRvIII specifically
and engages T-cells concomitantly through binding to CD3. EGFRvIII
binding capacity and specificity was confirmed by using NR6M
(EGFRvIII) and NR6W (EGFRwt) cell lines and a GBM cell line
transfected with EGFRvIII (U87MG.AEGFR). Similarly, binding to CD3
was confirmed by staining human peripheral blood mononuclear cells
(PBMCs) and Jurkat cells, showing the co-binding of either anti-CD4
or anti-CD8 with bispecific T cell engaging molecules on the same
T-cell subpopulation from human PBMC or Jurkat cells. Although
using human scFvs to generate bispecific T cell engaging molecules
may reduce the generation of neutralizing antibodies and permit
repeated administrations, the existing MR1-1 bispecific T cell
engaging molecule may also be used.
Example 3
[0067] In order to minimize potential allogeneic responses against
the tumor cells, we used our bank of existing matched human
peripheral blood lymphocytes (PBLs) and GBM cell lines in these
assays. Cytotoxicity of the MR1-1 bispecific T cell engaging
molecule was measured by a standard chromium-release assay using
unstimulated PBLs as effector cells and human GBM cell line U87MG,
which expresses wild-type EGFR, and the transfected U87MG-EGFRvIII
cell line as target cells. Results show that the MR1-1 construct is
highly cytotoxic and antigen-specific, with a nearly 25-fold
increase in specific lysis (%) for U87MGEGFRvIII over the wild-type
control, U87MG. These results echo, if not exceed, the findings
that were initially reported in vitro for bscCD19.times.CD34, a
bispecific construct that has since been tested in human trials and
found to induce potent tumor regression in patients with
non-Hodgkin's lymphoma. The specific lysis by MR1-1 bispecific T
cell engaging molecule was at 30% of U87 MG-EGFRvIII compared to
.about.1%-2% of control cells at 18 h, showing MR1-1 bispecific T
cell engaging molecule mediated dose dependent specific lysis in
vitro.
Example 4
[0068] The efficacy of MR1-1 bispecific T cell engaging molecule
was evaluated in NSG mice. We have determined the MR1-1 bispecific
T cell engaging molecule efficacy against U87MGEGFRvIII in NSG mice
s.c. Briefly, U87 MG-EGFRIII cells (70%-80% confluence) were
harvested with 0.25% Trypsin-EDTA. Cells were washed 2.times. with
sterile PBS. PBLs were harvested as the non-adherent portion from
healthy donor PBMC leukaphereses after a 1 h incubation in AIM-V 2%
HABS. Three .times.105 U87MG-EGFRvIII cells were mixed with
3.times.105 human PBLs (E:T of 1:1) and injected s.c. into the
right flanks of 8 male NSG mice per group. Treatment by tail vein
injections with 1 .mu.g, 10 .mu.g, 100 .mu.g, and vehicle control
was started 1 h after implantation of tumor cells. Treatment was
repeated for four consecutive days. The results showed that the
inhibition of subcutaneous U87MG-EGFRvIII tumor growth in NSG mice
by MR1-1.times.CD3 was dose-dependent after 28 days of observation.
Untreated tumor continued to grow steadily. There were two palpable
tumors out of 8 in the 1-.mu.g group. There was one palpable tumor
in the 10-.mu.g treated group. There were no tumors in the
100-.mu.g treated group. The efficacy of MR1-1 bispecific T cell
engaging molecule on the treatment of U87MG-EGFRvIII was very
significant and encouraging in terms of the potency and dose
dependency.
Example 5
[0069] EBV-transformed B cells provide only a transient reservoir
of multi-clonal anti-EGFRvIII antibodies due to the high
instability of viral incorporation into the human genome. To make
stable lines that secrete antibody and to clone EGFRvIII-specific
scFvs from these samples, we will use human hybridoma technology
and electrofusion as previously described (13). Briefly,
EBV-transformed PBMCs will be fused with hetermyeloma cell line
HMMA2.5 by using a CytoPulse Hybrimune Electrofusion System
(Cytopulse). Single cell clones will be screened by HAT
(hypoxanthine, aminopterin, and thymidine) selection and confirmed
by ELISA of supernatant against recombinant EGFRvIII ECD, or by
flow cytometry against EGFRvIII expression cells lines and a
cocktail of B-cell markers. Alternatively, we will construct a
phage scFv display library expressing human immunoglobulin genes
that can be screened on EGFRvIII ECD, and affinity-maturation will
be done when needed, as previously described. Another approach will
be to bypass the screening step by using high-throughput DNA
sequencing and bioinformatic analysis to mine antibody variable
region (V)-gene repertoires from plasma cells as described19. VH
and VL CDRs of the selected EGFRvIII-specific MAb-expressing
hybridomas will be amplified by using isotype-specific primers, and
scFv will be constructed in which the scFv protein has been tagged
at the carboxy terminus with the hexahistidine sequences for
purification and detection. Expression, production, and
characterization of scFv will be carried out as described by using
a metal affinity column. Binding of scFv will be confirmed by flow
cytometry on cells expressing EGFRvIII. At least one fully human
anti-EGFRvIII MAb will be isolated and its scFv is expected to have
an affinity higher than MR1-1 (1.5 nM).
Example 6
[0070] To make the whole anti-EGFRvIII bispecific T cell engaging
molecule human, we will generate a human scFv mimotope of murine
MAb OKT3 that reacts with CD3 antigen via screening from a human
scFv phage display library. The human scFv phagemid library(21),
obtained from Los Alamos National Laboratory, has very high size
(7.1.times.1013 pfu/mL) and diversity (3.times.10.sup.11). During
selection, the biotinylated target antigen, CD3 (Sino Biological
Inc.), is incubated with the scFv library, and complexes formed are
captured upon magnetic streptavidin-coated beads. The bead+Ag/scFv
complex is washed to remove nonspecific or low-affinity binding
phage. The bead+Ag/scFv complex is treated with acid (0.1M HCl) to
recover all scFvs that bind to the target antigen. To recover
mimics of the mouse antibodies, the bead+Ag/scFv complex will be
incubated with the corresponding mouse OKT3 IgG for
competition/elution of the binding scFv antibodies. To generate
those scFv antibodies with the highest affinity, the selection
pressure will be increased through each round for 3 rounds. Once
scFvs have been recovered that bind CD3, competition ELISA will be
carried out to determine whether they are true mimics of the mouse
OKT3, and affinity-maturation will be done if needed. We will then
determine the T-cell activation function of 7 the human version
OKT3 of anti-CD3 scFv by carrying out (a) T-lymphocyte
proliferation assays, (b) cytokine release assays, and (c)
detection of the expression of early T-cell activation marker by
FACS as described(22).
Example 7
[0071] We will construct a human anti-EGFRvIII scFv and a human
anti-CD3 scFv by linking VH and VL fragments with a (Gly4Ser).sub.3
peptide linker. A hexahistidine tag was introduced at the
C-terminus of human anti-CD3 scFv to assist the detection and
purification. Expression and purification of the new fully human
anti-EGFRvIII bispecific T cell engaging molecule will follow the
same protocol as described above for MR1-1 bispecific T cell
engaging molecule according to our previous protocol.
Example 8
[0072] Building upon these promising preliminary data from our
MR1-1 bispecific T cell engaging molecule studies, we will assess
the cytotoxic activity of new fully human EGFRvIII-targeted
bispecific T cell engaging molecules by following the same protocol
as described above. Negative control experiments will be carried
out with medium instead of bispecific T cell engaging molecule or
effector cells. Specific lysis will then be calculated as [(cpm,
experimental release)-(cpm, spontaneous release)]/[(cpm, maximal
release)-(cpm, spontaneous release)].
Example 9
[0073] The efficacy of novel fully human EGFRvIII bispecific T cell
engaging molecules will be evaluated in NSG mice as described
previously, as well as in the preliminary studies. Our program has
at its disposal a number of EGFRvIII-expressing human GBM
xenografts and cell lines with matched autologous lymphocytes
cryogenically preserved. Briefly, prior to bispecific T cell
engaging molecule administration, tumor cells and lymphocytes will
be mixed at a ratio of 1:1 and implanted in the caudate nucleus of
the NSG mice using a Kopf stereotactic frame as we previously
described(24). The NSG mouse model will provide "proof-of-concept"
efficacy studies against a GBM expressing EGFRvIII in the CNS.
Prior to beginning efficacy experiments, however, a maximum
tolerated dose (MTD) of each candidate bispecific T cell engaging
molecule will be established in these mice. Individual cohorts of
40 animals each will be administered a candidate molecule, with
doses between groups increased by one half log 10 from 0.001 to 1
.mu.g until an MTD is established. On the basis of prior work, mice
will be treated intravenously (i.v.) with daily bispecific T cell
engaging molecule doses for 5 days. Therapy at the MTD will start
after approximately one-third of the median survival time has
elapsed according to our prior experience with these tumors.
Treatment will consist of the i.v. administration of the bispecific
T cell engaging molecule construct at predetermined doses.
Example 10
[0074] Fully Human BiTE Design--We have generated cDNA encoding a
fully human EGFRvIII-specific BiTE designated 139.times.28F11. The
mAbs 139 (US 2010/0111979 A1) and 28F11 (U.S. Pat. No. 7,728,114
B2) are fully human antibodies with specificity for the EGFRvIII
tumor antigen and the human CD3 complex, respectively. 28F11 has
been described as the fully human analog for the murine OKT3 clone,
and was selected in this approach for its ability to bind CD3 and
induce T cell activation through this receptor similarly to
OKT3.
[0075] We subcloned the VH and VL genes from a fully human
anti-EGFRvIII mAb designated "139," and a fully human anti-CD3
activating mAb designated "28F11." Through well-known techniques,
we have constructed human single-chain Fvs by linking the VH and VL
fragments of each antibody with a (Gly4Ser).sub.3 peptide
linker.
[0076] We have previously performed these same manipulations for
the commercially available human CD3-specific mAb OKT3 and the
murine anti EGFKvIII mAb MR1-1 to manufacture the existing
MR1-1.times.OKT3 BiTE described above. Using this technique, we
have generated a fully human BiTE--thus reducing the potential
generation of neutralizing antibodies and permitting repeated
administration--the existing MR1-1.times.OKT3 construct could be
further investigated clinically as an alternative given previous
success in clinical trials with BiTEs derived from murine
antibodies.
[0077] Cytotoxicity of the 139.times.28F11 construct will be
measured by standard chromium-release assay using unstimulated
human peripheral blood lymphocytes (PBLs) as effector cells and
human GBM cell lines U87MG and U87MG.AEGFR as target cells.
[0078] The xenograft system we used to obtain our preliminary data
has the distinct advantage of evaluating drug candidates for
efficacy in an animal system using human tumor tissue, with the
potential to directly translate the therapeutic molecule of
interest into clinical studies. However, a major drawback of this
model is the lack of an endogenous immune system, which drastically
impedes our ability to appropriately evaluate safety and toxicity
of our molecule, as well as perform numerous mechanistic studies
that may only be appropriately performed in syngeneic hosts.
Importantly, other T cell activating antibodies have historically
met with unforeseen toxicity when translated in early clinical
trials, at least in part due to the lack of appropriate
immunocompetent rodent models possessing surface molecules of
equivalent binding affinities and function to those found in humans
(25).
[0079] The use of human CD3 transgenic mice in the preclinical
evaluation of our CD3-engaging BiTE, EGFRvIII.times.CD3, is
unusual. These mice have been previously described to have .about.3
copies of the human CD3 transgene integrated chromosomally at
unknown locations (26). When heterozygous, tg.epsilon.600.+-.mice
possess near-normal numbers of peripheral T cells that express both
human and murine CD3. Notably, the tg.epsilon.600.+-.mouse strain
has been successfully used to test the function of anti-human CD3
immunotoxins in preclinical models of T cell depletion and graft
survival (27).
[0080] We have successfully imported the tg.epsilon.600.+-.mouse
strain as embryos from Dr. Cox Terhorst (Beth Israel Deaconess
Medical Center). We propose to establish a colony of
tg.epsilon.600.+-., and using our preexisting murine
EGFRvIII-expressing cell lines as targets, we will first examine
the ability for EGFRvIII.times.CD3 to redirect splenocytes from
tg.epsilon.600.+-.mice against tumor cells in vitro by standard
chromium release assay. After establishing minimum tumorigenic
doses in the tg.epsilon.600.+-.mouse model, we will proceed with a
validation of the results obtained from experiments we previously
performed in the immunocompromised xenograft system.
Example 11
[0081] We codon optimized the nucleic acid encoding the human
bispecific T cell engaging molecule for expression in CHO cells.
Our human bispecific T cell engaging molecules included a signal
sequence and a V.sub.L-V.sub.H order for the EGFRvIII targeting
portion of the molecule. It also contained linker molecules between
each variable domain. We have found a molecule with this order to
be more effective. We did not include a polyhistidine tag in the
human bispecific T cell engaging molecule construct, which had been
previously included to facilitate protein purification.
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27. Weetal 2002
Sequence CWU 1
1
1011506DNAArtificial Sequencemodified human sequence construct;
codon optimized for expression in CHO cells 1atgaagtggg tgacctttat
tagcctgctg ttcctgttct cctccgccta ttccgacatc 60cagatgactc agagcccttc
ttccctgtca gcttccgtgg gcgacagggt caccatcaca 120tgccgggctt
cccagggaat tagaaacaat ctggcatggt accagcagaa gccaggcaaa
180gcccccaagc gcctgatcta tgccgcttct aacctgcaga gtggagtgcc
ctcacgattc 240acaggcagcg gatctgggac agagtttact ctgattgtct
ccagcctgca gccagaagat 300ttcgccactt actattgcct gcagcaccat
tcctaccccc tgacaagcgg cggagggact 360aaagtggaga tcaagggtgg
aggaggatct ggtggaggag gaagtggtgg aggaggatca 420gaggtgcagg
tcctggaaag cggtggagga ctggtgcagc caggaggttc cctgcgtctg
480agctgtgcag cctctggctt caccttttct agttatgcaa tgtcctgggt
gcgccaggca 540cctggcaagg gactggaatg ggtcagcgca atcagtggct
caggcggaag tacaaactac 600gccgactcag tgaaaggaag gttcaccatt
agtcgcgata actcaaagaa tactctgtat 660ctgcagatga atagcctgcg
ggccgaggac accgctgtgt actattgcgc tggctcatcc 720ggatggtctg
aatactgggg acaggggacc ctggtgacag tcagctctgg gggtggcgga
780tctcaggtgc agctggtcga gagtggaggt ggagtggtcc agccaggaag
gtccctgcga 840ctgagctgtg ctgcatctgg tttcaaattt tctggttacg
gcatgcactg ggtgagacag 900gctcccggaa aggggctgga atgggtggca
gtcatctggt atgacggaag caagaaatac 960tatgtggatt ctgtcaaagg
gcgattcacc attagtcgtg ataactcaaa gaatacactg 1020tacctgcaaa
tgaatagctt acgggcagag gacactgccg tgtactattg cgctagacag
1080atgggctatt ggcattttga tctgtggggt cgcggcactc tggtgaccgt
cagttctgga 1140ggaggtggat ccggaggagg tggaagcgga gggggtggct
ctgagatcgt gctgacccag 1200tctccagcaa cactgtccct gagccctgga
gaacgcgcca cactgtcctg tcgagcttct 1260cagagtgtgt ccagctacct
ggcctggtat cagcagaagc ctggccaggc tccacgactg 1320ctgatctacg
acgcttccaa ccgtgcaact ggcattcctg ctaggttctc aggatccggg
1380agcggtaccg actttactct gaccatctct agtctggagc cagaagattt
cgcagtgtac 1440tattgtcagc agaggagcaa ttggccccct ctgacttttg
gagggggtac caaagtcgag 1500attaag 15062502PRTArtificial
Sequencemodified human sequence construct; complete amino acid
sequence including signal peptide 2Met Lys Trp Val Thr Phe Ile Ser
Leu Leu Phe Leu Phe Ser Ser Ala1 5 10 15Tyr Ser Asp Ile Gln Met Thr
Gln Ser Pro Ser Ser Leu Ser Ala Ser 20 25 30Val Gly Asp Arg Val Thr
Ile Thr Cys Arg Ala Ser Gln Gly Ile Arg 35 40 45Asn Asn Leu Ala Trp
Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Arg 50 55 60Leu Ile Tyr Ala
Ala Ser Asn Leu Gln Ser Gly Val Pro Ser Arg Phe65 70 75 80Thr Gly
Ser Gly Ser Gly Thr Glu Phe Thr Leu Ile Val Ser Ser Leu 85 90 95Gln
Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Leu Gln His His Ser Tyr 100 105
110Pro Leu Thr Ser Gly Gly Gly Thr Lys Val Glu Ile Lys Gly Gly Gly
115 120 125Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Val
Gln Val 130 135 140Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly
Ser Leu Arg Leu145 150 155 160Ser Cys Ala Ala Ser Gly Phe Thr Phe
Ser Ser Tyr Ala Met Ser Trp 165 170 175Val Arg Gln Ala Pro Gly Lys
Gly Leu Glu Trp Val Ser Ala Ile Ser 180 185 190Gly Ser Gly Gly Ser
Thr Asn Tyr Ala Asp Ser Val Lys Gly Arg Phe 195 200 205Thr Ile Ser
Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu Gln Met Asn 210 215 220Ser
Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala Gly Ser Ser225 230
235 240Gly Trp Ser Glu Tyr Trp Gly Gln Gly Thr Leu Val Thr Val Ser
Ser 245 250 255Gly Gly Gly Gly Ser Gln Val Gln Leu Val Glu Ser Gly
Gly Gly Val 260 265 270Val Gln Pro Gly Arg Ser Leu Arg Leu Ser Cys
Ala Ala Ser Gly Phe 275 280 285Lys Phe Ser Gly Tyr Gly Met His Trp
Val Arg Gln Ala Pro Gly Lys 290 295 300Gly Leu Glu Trp Val Ala Val
Ile Trp Tyr Asp Gly Ser Lys Lys Tyr305 310 315 320Tyr Val Asp Ser
Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser 325 330 335Lys Asn
Thr Leu Tyr Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr 340 345
350Ala Val Tyr Tyr Cys Ala Arg Gln Met Gly Tyr Trp His Phe Asp Leu
355 360 365Trp Gly Arg Gly Thr Leu Val Thr Val Ser Ser Gly Gly Gly
Gly Ser 370 375 380Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Ile
Val Leu Thr Gln385 390 395 400Ser Pro Ala Thr Leu Ser Leu Ser Pro
Gly Glu Arg Ala Thr Leu Ser 405 410 415Cys Arg Ala Ser Gln Ser Val
Ser Ser Tyr Leu Ala Trp Tyr Gln Gln 420 425 430Lys Pro Gly Gln Ala
Pro Arg Leu Leu Ile Tyr Asp Ala Ser Asn Arg 435 440 445Ala Thr Gly
Ile Pro Ala Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp 450 455 460Phe
Thr Leu Thr Ile Ser Ser Leu Glu Pro Glu Asp Phe Ala Val Tyr465 470
475 480Tyr Cys Gln Gln Arg Ser Asn Trp Pro Pro Leu Thr Phe Gly Gly
Gly 485 490 495Thr Lys Val Glu Ile Lys 5003484PRTArtificial
Sequencemodified human sequence construct; mature amino acid
seuqence 3Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser
Val Gly1 5 10 15Asp Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Gly Ile
Arg Asn Asn 20 25 30Leu Ala Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro
Lys Arg Leu Ile 35 40 45Tyr Ala Ala Ser Asn Leu Gln Ser Gly Val Pro
Ser Arg Phe Thr Gly 50 55 60Ser Gly Ser Gly Thr Glu Phe Thr Leu Ile
Val Ser Ser Leu Gln Pro65 70 75 80Glu Asp Phe Ala Thr Tyr Tyr Cys
Leu Gln His His Ser Tyr Pro Leu 85 90 95Thr Ser Gly Gly Gly Thr Lys
Val Glu Ile Lys Gly Gly Gly Gly Ser 100 105 110Gly Gly Gly Gly Ser
Gly Gly Gly Gly Ser Glu Val Gln Val Leu Glu 115 120 125Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly Ser Leu Arg Leu Ser Cys 130 135 140Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr Ala Met Ser Trp Val Arg145 150
155 160Gln Ala Pro Gly Lys Gly Leu Glu Trp Val Ser Ala Ile Ser Gly
Ser 165 170 175Gly Gly Ser Thr Asn Tyr Ala Asp Ser Val Lys Gly Arg
Phe Thr Ile 180 185 190Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu
Gln Met Asn Ser Leu 195 200 205Arg Ala Glu Asp Thr Ala Val Tyr Tyr
Cys Ala Gly Ser Ser Gly Trp 210 215 220Ser Glu Tyr Trp Gly Gln Gly
Thr Leu Val Thr Val Ser Ser Gly Gly225 230 235 240Gly Gly Ser Gln
Val Gln Leu Val Glu Ser Gly Gly Gly Val Val Gln 245 250 255Pro Gly
Arg Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Lys Phe 260 265
270Ser Gly Tyr Gly Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
275 280 285Glu Trp Val Ala Val Ile Trp Tyr Asp Gly Ser Lys Lys Tyr
Tyr Val 290 295 300Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp
Asn Ser Lys Asn305 310 315 320Thr Leu Tyr Leu Gln Met Asn Ser Leu
Arg Ala Glu Asp Thr Ala Val 325 330 335Tyr Tyr Cys Ala Arg Gln Met
Gly Tyr Trp His Phe Asp Leu Trp Gly 340 345 350Arg Gly Thr Leu Val
Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly 355 360 365Gly Gly Ser
Gly Gly Gly Gly Ser Glu Ile Val Leu Thr Gln Ser Pro 370 375 380Ala
Thr Leu Ser Leu Ser Pro Gly Glu Arg Ala Thr Leu Ser Cys Arg385 390
395 400Ala Ser Gln Ser Val Ser Ser Tyr Leu Ala Trp Tyr Gln Gln Lys
Pro 405 410 415Gly Gln Ala Pro Arg Leu Leu Ile Tyr Asp Ala Ser Asn
Arg Ala Thr 420 425 430Gly Ile Pro Ala Arg Phe Ser Gly Ser Gly Ser
Gly Thr Asp Phe Thr 435 440 445Leu Thr Ile Ser Ser Leu Glu Pro Glu
Asp Phe Ala Val Tyr Tyr Cys 450 455 460Gln Gln Arg Ser Asn Trp Pro
Pro Leu Thr Phe Gly Gly Gly Thr Lys465 470 475 480Val Glu Ile
Lys418PRTArtificial Sequencesignal peptide 4Met Lys Trp Val Thr Phe
Ile Ser Leu Leu Phe Leu Phe Ser Ser Ala1 5 10 15Tyr
Ser5107PRTArtificial Sequencemodified human sequence construct;
anti-EGFRvIII VL sequence 5Asp Ile Gln Met Thr Gln Ser Pro Ser Ser
Leu Ser Ala Ser Val Gly1 5 10 15Asp Arg Val Thr Ile Thr Cys Arg Ala
Ser Gln Gly Ile Arg Asn Asn 20 25 30Leu Ala Trp Tyr Gln Gln Lys Pro
Gly Lys Ala Pro Lys Arg Leu Ile 35 40 45Tyr Ala Ala Ser Asn Leu Gln
Ser Gly Val Pro Ser Arg Phe Thr Gly 50 55 60Ser Gly Ser Gly Thr Glu
Phe Thr Leu Ile Val Ser Ser Leu Gln Pro65 70 75 80Glu Asp Phe Ala
Thr Tyr Tyr Cys Leu Gln His His Ser Tyr Pro Leu 85 90 95Thr Ser Gly
Gly Gly Thr Lys Val Glu Ile Lys 100 1056116PRTArtificial
Sequencemodified human sequence construct; anti-EGFRvIII VH
sequence 6Glu Val Gln Val Leu Glu Ser Gly Gly Gly Leu Val Gln Pro
Gly Gly1 5 10 15Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe
Ser Ser Tyr 20 25 30Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly
Leu Glu Trp Val 35 40 45Ser Ala Ile Ser Gly Ser Gly Gly Ser Thr Asn
Tyr Ala Asp Ser Val 50 55 60Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ser Lys Asn Thr Leu Tyr65 70 75 80Leu Gln Met Asn Ser Leu Arg Ala
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95Ala Gly Ser Ser Gly Trp Ser
Glu Tyr Trp Gly Gln Gly Thr Leu Val 100 105 110Thr Val Ser Ser
1157118PRTArtificial Sequencemodified human sequence construct;
anti-CD3VH sequence 7Gln Val Gln Leu Val Glu Ser Gly Gly Gly Val
Val Gln Pro Gly Arg1 5 10 15Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly
Phe Lys Phe Ser Gly Tyr 20 25 30Gly Met His Trp Val Arg Gln Ala Pro
Gly Lys Gly Leu Glu Trp Val 35 40 45Ala Val Ile Trp Tyr Asp Gly Ser
Lys Lys Tyr Tyr Val Asp Ser Val 50 55 60Lys Gly Arg Phe Thr Ile Ser
Arg Asp Asn Ser Lys Asn Thr Leu Tyr65 70 75 80Leu Gln Met Asn Ser
Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95Ala Arg Gln Met
Gly Tyr Trp His Phe Asp Leu Trp Gly Arg Gly Thr 100 105 110Leu Val
Thr Val Ser Ser 1158108PRTArtificial Sequencemodified human
sequence construct; anti-CD3 VL sequence 8Glu Ile Val Leu Thr Gln
Ser Pro Ala Thr Leu Ser Leu Ser Pro Gly1 5 10 15Glu Arg Ala Thr Leu
Ser Cys Arg Ala Ser Gln Ser Val Ser Ser Tyr 20 25 30Leu Ala Trp Tyr
Gln Gln Lys Pro Gly Gln Ala Pro Arg Leu Leu Ile 35 40 45Tyr Asp Ala
Ser Asn Arg Ala Thr Gly Ile Pro Ala Arg Phe Ser Gly 50 55 60Ser Gly
Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Glu Pro65 70 75
80Glu Asp Phe Ala Val Tyr Tyr Cys Gln Gln Arg Ser Asn Trp Pro Pro
85 90 95Leu Thr Phe Gly Gly Gly Thr Lys Val Glu Ile Lys 100
105915PRTArtificial Sequencelinker 1 9Gly Gly Gly Gly Ser Gly Gly
Gly Gly Ser Gly Gly Gly Gly Ser1 5 10 15105PRTArtificial
Sequencelinker 2 10Gly Gly Gly Gly Ser1 5
* * * * *