U.S. patent application number 14/921894 was filed with the patent office on 2016-02-18 for type ii raf kinase inhibitors.
This patent application is currently assigned to Dana-Farber Cancer Institute, Inc.. The applicant listed for this patent is Dana-Farber Cancer Institute, Inc.. Invention is credited to Hwan Geun Choi, Xianming Deng, Nathanael S. Gray, Jianming Zhang.
Application Number | 20160046636 14/921894 |
Document ID | / |
Family ID | 44307490 |
Filed Date | 2016-02-18 |
United States Patent
Application |
20160046636 |
Kind Code |
A1 |
Gray; Nathanael S. ; et
al. |
February 18, 2016 |
TYPE II RAF KINASE INHIBITORS
Abstract
The present invention relates to novel compounds which are able
to modulate b-raf kinases, and the use of such compounds in the
treatment of various diseases, disorders or conditions.
Inventors: |
Gray; Nathanael S.; (Boston,
MA) ; Choi; Hwan Geun; (Chestnut Hill, MA) ;
Deng; Xianming; (Brookline, MA) ; Zhang;
Jianming; (Cambridge, MA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Dana-Farber Cancer Institute, Inc. |
Boston |
MA |
US |
|
|
Assignee: |
Dana-Farber Cancer Institute,
Inc.
Boston
MA
|
Family ID: |
44307490 |
Appl. No.: |
14/921894 |
Filed: |
October 23, 2015 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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13519826 |
Nov 1, 2012 |
9180127 |
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PCT/US2010/062310 |
Dec 29, 2010 |
|
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14921894 |
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61290884 |
Dec 29, 2009 |
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Current U.S.
Class: |
424/133.1 ;
424/142.1; 514/252.11; 514/252.16; 514/252.17; 514/253.04;
514/253.12; 514/255.06; 514/300; 544/262; 544/265; 544/280;
544/287; 544/336; 544/357; 544/362; 544/365; 546/113 |
Current CPC
Class: |
C07D 403/12 20130101;
C07D 417/12 20130101; A61K 45/06 20130101; A61K 31/437 20130101;
C07D 487/04 20130101; A61K 31/496 20130101; C07D 241/20 20130101;
C07D 401/14 20130101; C07D 471/04 20130101; A61K 31/497 20130101;
C07D 239/88 20130101; A61P 35/00 20180101; A61K 31/517 20130101;
A61K 31/519 20130101; C07D 239/42 20130101; C07D 473/30 20130101;
C07D 213/81 20130101; A61K 31/4965 20130101; C07D 401/12
20130101 |
International
Class: |
C07D 487/04 20060101
C07D487/04; C07D 241/20 20060101 C07D241/20; A61K 31/4965 20060101
A61K031/4965; C07D 471/04 20060101 C07D471/04; A61K 31/496 20060101
A61K031/496; A61K 45/06 20060101 A61K045/06; A61K 31/519 20060101
A61K031/519; C07D 213/81 20060101 C07D213/81; C07D 473/30 20060101
C07D473/30; C07D 239/88 20060101 C07D239/88; A61K 31/517 20060101
A61K031/517; A61K 31/497 20060101 A61K031/497; A61K 31/437 20060101
A61K031/437 |
Claims
1. A compound of formula I: ##STR00111## or a pharmaceutically
acceptable salt, ester or prodrug thereof, wherein, ring D is aryl
or heteroaryl; R is H, halo, or -A-B; A is NR.sub.AC(O), O,
S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, NR.sub.AC(O)NR.sub.A, or
absent; B is H, alkyl, alkoxy, cycloalkyl, or aryl, each of which
is optionally substituted; R.sub.1 is hydroxyl, alkyl, alkoxy,
C(O)OR.sub.A, C(O)NR.sub.AR.sub.B, or NR.sub.AR.sub.B, each of
which may be optionally substituted; or H or halo; R' is absent, or
R and R' together with the atoms to which each is attached, form a
cycloalkyl, heterocycloalkyl, aryl, or heteroaryl ring, each of
which is optionally substituted; Z is NR.sub.A, O, NR.sub.AC(O),
C(O)NR.sub.A, CR.sub.3R.sub.4 or S(O).sub.m; R.sub.3 is H or alkyl;
R.sub.4 is H, alkyl, or absent; or R.sub.3 and R.sub.4 together
with the carbon to which each is attached form C(O); ring E is
monocyclic or bicyclic heteroaryl; R.sub.z is NR.sub.AR.sub.2;
R.sub.2 is H, optionally substituted aryl, optionally substituted
heteroaryl, optionally substituted heterocycloalkyl, C(O)R.sub.A,
C(O)OR.sub.A, C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or
C(NR.sub.B)OR.sub.A; R.sub.5 is H, halo, alkyl, alkoxy, or
thioalkoxy; R.sub.6 is H, NR.sub.AR.sub.B, or OR.sub.A; each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; each R.sub.B is independently H, alkyl, alkenyl,
cycloalkyl, heterocyclic, aryl or heteroaryl, each of which may be
optionally substituted; or, for each occurrence of NR.sub.AR.sub.B,
R.sub.A and R.sub.B are taken together with the nitrogen atom to
which they are attached to form a 3-7 membered heterocycloalkyl
ring; each m is independently 0, 1, or 2; and each n is
independently 0 or 1.
2. The compound of claim 1, wherein ring D is selected from phenyl,
naphthyl, tetrahydronaphthyl, indanyl, idenyl, pyridinyl,
pyrazinyl, pyrimidinyl, pyrrolyl, pyrazolyl, pyrrolo pyridinyl,
thiazolo pyridinyl, imidazolyl, thiazolyl, oxazolyl, isooxazolyl,
thiadiazolyl, oxadiazolyl, thiophenyl, furanyl, indazolyl,
indolonyl, quinolinyl, isoquinolinyl, benzimidazolyl,
benzooxazolyl, and quinoxalinyl.
3. The compound of claim 2, wherein ring D is selected from phenyl,
naphthyl, pyrazinyl, pyrimidinyl, pyrrolo pyridinyl, thiazolo
pyridinyl, indazolyl, indolonyl, and quinolinyl.
4. The compound of claim 1, wherein ring E is selected from phenyl,
naphthyl, tetrahydronaphthyl, indanyl, idenyl, pyridinyl,
pyrazinyl, pyrimidinyl, pyrrolyl, pyrazolyl, imidazolyl, thiazolyl,
oxazolyl, isooxazolyl, thiophenyl, furanyl, indazolyl, indolonyl,
quinolinyl, isoquinolinyl, quinazolinyl, 1H-pyrrolo[2,3-b]pyridine,
9H-purine, 7H-pyrrolo[2,3-d]pyrimidine,
1H-pyrazolo[3,4-d]pyrimidine, and quinoxalinyl.
5. The compound of claim 4, wherein ring E is selected from phenyl,
naphthyl, pyridinyl, pyrazinyl, and pyrimidinyl.
6. The compound of claim 1, of formula II: ##STR00112## or a
pharmaceutically acceptable salt, ester or prodrug thereof,
wherein, Z is NH or O; R is H or -A-B; A is NR.sub.AC(O), O,
S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent; B is alkyl,
alkoxy, or aryl, each of which is optionally substituted; R.sub.1
is H, alkyl, alkoxy, or halo; each of which may be optionally
substituted; R.sub.2 is H, C(O)R.sub.A, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or C(NR.sub.B)OR.sub.A;
each R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; each R.sub.B is independently H, alkyl, alkenyl,
cycloalkyl, heterocyclic, aryl or heteroaryl, each of which may be
optionally substituted; and m is 0, 1, or 2.
7. The compound of claim 6, wherein R.sub.2 is H, C(O)R.sub.A,
C(O)OR.sub.A, or C(O)NR.sub.AR.sub.B.
8. The compound of claim 7, wherein each R.sub.A is independently
H, alkyl, or cycloalkyl, each of which may be optionally
substituted; and R.sub.B is H.
9. The compound of claim 6, wherein R.sub.2 is H, ##STR00113##
10. The compound of claim 6, wherein R.sub.1 is H, alkyl, alkoxy,
or halo.
11. The compound of claim 10, wherein R.sub.1 is H, methyl,
methoxy, or chloro.
12. The compound of claim 6, wherein R is H or -A-B; A is
NR.sub.AC(O), C(O), C(O)O, C(O)NR.sub.A, or absent; and B is alkyl,
alkoxy, or aryl, each of which is optionally substituted.
13. The compound of claim 12, wherein A is NHC(O), C(O)O, C(O)NH,
or absent.
14. The compound of claim 12, wherein B is phenyl, methyl, or
methoxy; each of which is optionally substituted.
15. The compound of claim 14, wherein B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, or hydroxyl, each of which is
optionally substituted.
16. The compound of claim 12, wherein R is selected from H, methyl,
methoxy, ##STR00114## ##STR00115##
17. The compound of claim 1, of formula III: ##STR00116## or a
pharmaceutically acceptable salt, ester or prodrug thereof,
wherein, ring D is aryl or heteroaryl; R is H, halo, or -A-B; A is
NR.sub.AC(O), O, S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent;
B is H, alkyl, cycloalkyl, or aryl, each of which is optionally
substituted; R.sub.1 is H, hydroxyl, alkyl, alkoxy, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, NR.sub.AR.sub.B, or halo; each of which may be
optionally substituted; or R and R' together with the atoms to
which each is attached, form a cycloalkyl, heterocycloalkyl, aryl,
or heteroaryl ring, each of which is optionally substituted;
R.sub.2 is H, optionally substituted aryl, optionally substituted
heteroaryl, optionally substituted heterocycloalkyl, C(O)R.sub.A,
C(O)OR.sub.A, C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or
C(NR.sub.B)OR.sub.A; each R.sub.A is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; each R.sub.B is independently
H, alkyl, alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl,
each of which may be optionally substituted; and m is 0, 1, or
2.
18. The compound of claim 17, wherein R.sub.2 is H, optionally
substituted aryl, or optionally substituted heteroaryl.
19. The compound of claim 18, wherein R.sub.2 is H, phenyl,
pyridyl, pyrimidinyl, each of which is optionally substituted.
20. The compound of claim 19, wherein R.sub.2 is H,
##STR00117##
21. The compound of claim 17, wherein ring D is phenyl, pyrrolo
pyridine, benzothiazole, indazole, pyrazine, or indolinone.
22. The compound of claim 17, wherein R.sub.1 is H, hydroxyl,
alkyl, NR.sub.AR.sub.B, or halo; each of which may be optionally
substituted.
23. The compound of claim 17, wherein R is H, halo, or -A-B; A is
NR.sub.AC(O), O, S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent;
and B is alkyl, cycloalkyl, or aryl, each of which is optionally
substituted.
24. The compound of claim 23, wherein A is NHC(O), C(O)O, C(O)NH,
or absent.
25. The compound of claim 23, wherein B is H, alkyl, cycloalkyl, or
aryl, each of which is optionally substituted.
26. The compound of claim 25, wherein B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
27. The compound of claim 23, wherein R is H, methyl, Cl, F, COOH,
C(O)NHCH.sub.3, ##STR00118## ##STR00119##
28. The compound of claim 1, of formula IV: ##STR00120## or a
pharmaceutically acceptable salt, ester or prodrug thereof,
wherein, R is H or -A-B; A is NR.sub.AC(O), O, S(O).sub.m, C(O),
C(O)O, C(O)NR.sub.A, or absent; B is alkyl or aryl, each of which
is optionally substituted; R.sub.1 is H, alkyl, alkoxy, or halo;
each of which may be optionally substituted; Z is NR.sub.A, O, or
S(O).sub.m; R.sub.3 is H or alkyl; R.sub.4 is H or alkyl; or
R.sub.3 and R.sub.4 together with the carbon to which each is
attached form C(O); R.sub.5 is H, halo, alkoxy, or thioalkoxy, each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; and each m is independently 0, 1, or 2.
29. The compound of claim 28, wherein Z is NR.sub.A or O; R.sub.3
is H; R.sub.4 is H; or R.sub.3 and R.sub.4 together with the carbon
to which each is attached form C(O).
30. The compound of claim 29, wherein Z is NH or O.
31. The compound of claim 28, wherein R.sub.5 is H, halo, alkoxy,
or thioalkoxy.
32. The compound of claim 31, wherein R.sub.5 is H, Cl, methoxy, or
S(i-Pr).
33. The compound of claim 28, wherein R.sub.1 is H, alkyl, or
alkoxy; each of which may be optionally substituted.
34. The compound of claim 28, wherein R is -A-B; A is NR.sub.AC(O)
or C(O)NR.sub.A; and B is alkyl or aryl, each of which is
optionally substituted.
35. The compound of claim 28, wherein A is NHC(O) or C(O)NH.
36. The compound of claim 28, wherein B is alkyl or aryl, each of
which is optionally substituted.
37. The compound of claim 36, wherein B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
38. The compound of claim 28, wherein R is ##STR00121##
##STR00122##
39. The compound of claim 1, of formula V: ##STR00123## or a
pharmaceutically acceptable salt, ester or prodrug thereof,
wherein, R is H or -A-B; A is NR.sub.AC(O), O, S(O).sub.m, C(O),
C(O)O, C(O)NR.sub.A, or absent; B is alkyl or aryl, each of which
is optionally substituted; R.sub.1 is H, alkyl, alkoxy, or halo;
each of which may be optionally substituted; R.sub.5 is H, halo,
alkoxy, or thioalkoxy, each R.sub.A is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; and m is 0, 1, or 2.
40. The compound of claim 39, wherein R.sub.5 is halo or
alkoxy.
41. The compound of claim 40, wherein R.sub.5 is Cl or methoxy.
42. The compound of claim 39, wherein R.sub.1 is alkyl, which may
be optionally substituted.
43. The compound of claim 39, wherein R is -A-B; A is NR.sub.AC(O)
or C(O)NR.sub.A; and B is alkyl or aryl, each of which is
optionally substituted.
44. The compound of claim 43, wherein A is NHC(O) or C(O)NH.
45. The compound of claim 43, wherein B is alkyl or aryl, each of
which is optionally substituted.
46. The compound of claim 45, wherein B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
47. The compound of claim 39, wherein R is ##STR00124##
48. The compound of claim 1, of formula VI: ##STR00125## or a
pharmaceutically acceptable salt, ester or prodrug thereof,
wherein, ring D is aryl or heteroaryl; R is H, halo, or -A-B; A is
NR.sub.AC(O), O, S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent;
B is alkyl, cycloalkyl, or aryl, each of which is optionally
substituted; R.sub.1 is H, hydroxyl, alkyl, alkoxy, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, NR.sub.AR.sub.B, or halo; each of which may be
optionally substituted; R.sub.6 is H, NR.sub.AR.sub.B, or OR.sub.A;
R.sub.5 is H, halo, alkoxy, or thioalkoxy, each R.sub.A is
independently H, alkyl, alkenyl, cycloalkyl, heterocyclic, aryl or
heteroaryl, each of which may be optionally substituted; each
R.sub.B is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; and m is 0, 1, or 2.
49. The compound of claim 48, wherein R.sub.6 is H or
NR.sub.AR.sub.B.
50. The compound of claim 49, wherein R.sub.A is an optionally
substituted aryl and R.sub.B is H.
51. The compound of claim 48, wherein R.sub.5 is H or Cl.
52. The compound of claim 48, wherein ring D is phenyl, naphthyl,
indolonyl, or quinolinyl.
53. The compound of claim 52, wherein R.sub.1 is H.
54. The compound of claim 53, wherein R is -A-B; A is NR.sub.AC(O)
or C(O)NR.sub.A; and B is alkyl or aryl, each of which is
optionally substituted.
55. The compound of claim 54, wherein A is NHC(O) or C(O)NH.
56. The compound of claim 54, wherein B is alkyl or phenyl, each of
which is optionally substituted.
57. The compound of claim 56, wherein B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
58. The compound of claim 54, wherein R is ##STR00126##
59. The compound of claim 1, selected from a compound in any one of
Tables 1-13.
60. A pharmaceutical composition comprising a compound of claim 1,
or a pharmaceutically acceptable ester, salt, or prodrug thereof,
together with a pharmaceutically acceptable carrier.
61. A method of inhibiting a b-raf kinase in a subject, comprising
administering administering to the subject a compound of formula
I.
62. The method of claim 61, wherein the b-raf kinase is a mutant
b-raf kinase.
63. The method of claim 62, wherein the mutation of the mutant
b-raf kinase is V600E, T529I, or V600E/T529I.
64. A method of treating a disease related to kinase modulation in
a subject comprising administering to the subject a compound or
pharmaceutically acceptable salt of formula I; wherein the kinase
is selected from b-raf, Abl, Csf1R, EGFR, EphA8, FGFR1,2,3,4, FLT3,
KIT, Lok, MAP4K1, MUSK, p38alpha, beta, PDGFRalpha, beta, Ret,
Taok3, TNNI3K, Fes, Lyn SRPK1, STK36, TIE2, DDR1, EPHA2, ROIK1,
RIOK3, NKF1LK, Src, Tak1, BLK, EphA4, EphB2, Fgr, FLT4, MAP4K2,
ANKK1, Frk, Lck, Map4K5, Erbb4, Map4k4, MKNK2, Tec, Flt1, Hck,
Tnk2, Txk, BTK, SLK, RiPK1, RIPK2, BIKE, CIT, CDKL2, DRAK, EphB1,
JNK2, MLK1, MYLK2, TrkA,B,C, VEGFR2, IKKalpha, PTK2B, MAP4K3, Tie2,
Fyn, Zak, DDR2, AurC, Lyn, Hpk1, and Gck.
65. The method of claim 64, wherein the kinase is selected from
b-raf b-raf, Abl, Csf1R, EGFR, EphA8, FGFR1,2,3,4, FLT3, KIT, Lok,
MAP4K1, MUSK, p38alpha, beta, PDGFRalpha, beta, Ret, Taok3, TNNI3K,
Fes, Lyn SRPK1, STK36, TIE2, DDR1, EPHA2, ROIK1, RIOK3, NKF1LK,
Src, Tak1, BLK, EphA4, EphB2, Fgr, FLT4, MAP4K2, ANKK1, Frk, Lck,
Map4K5, Erbb4, Map4k4, MKNK2, Tec, Flt1, Hck, Tnk2, Txk, BTK, SLK,
RiPK1, RIPK2, BIKE, CIT, CDKL2, DRAK, EphB1, JNK2, MLK1, MYLK2,
TrkA,B,C, VEGFR2, IKKalpha, PTK2B, MAP4K3, Tie2, Fyn, Zak, DDR2,
AurC, Lyn, Hpk1, and Gck.
66. A method of treating a disease related to b-raf or b-raf
mutation modulation in a subject comprising administering to the
subject a compound or pharmaceutically acceptable salt of formula
I.
67. A method of treating a disease related to b-raf or b-raf
mutation modulation in a subject comprising: administering to the
subject identified as in need thereof a compound or
pharmaceutically acceptable salt of formula I.
68. The method of claim 66 or 67, wherein the modulation is
inhibition.
69. The method of claim 66 or 67, wherein the b-raf mutation is
V600E, T529I, or V600E/T529I.
70. The method of claim 66 or 67 wherein the disease is cancer or a
proliferation disease.
71. The method of claim 70, wherein the disease is melanoma, lung
cancer, colon cancer, breast cancer, prostate cancer, liver cancer,
pancreas cancer, brain cancer, kidney cancer, ovarian cancer,
stomach cancer, skin cancer, bone cancer, gastric cancer, breast
cancer, pancreatic cancer, glioma, gliobastoma, hepatocellular
carcinoma, papillary renal carcinoma, head and neck squamous cell
carcinoma, leukemias, lymphomas, myelomas, and solid tumors.
72. The method of claim 66 or 67, wherein the subject is
administered an additional therapeutic agent.
73. The method of claim 72, wherein the compound and the additional
therapeutic agent are administered simultaneously or
sequentially.
74. The method of claim 72, wherein the additional therapeutic is a
b-raf inhibitor.
75. The method of claim 72, wherein the additional therapeutic is a
clinical b-raf inhibitor that directly targets the b-raf ATP
site.
76. The method of claim 75, wherein the additional therapeutic is
sorafenib, Raf265, AZ628, PLX-4032, PLX-4720, gefitinib, erlotinib,
lapatinib, XL-647, HKI-272, BIBW2992, AV-412, CI-1033, PF00299804,
BMS 690514, cetuximab, panitumumab, or matuzumab.
77. A method of treating a disease related to b-raf or b-raf
mutation modulation in a subject, wherein the disease is resistant
to drug resistant mutations in b-raf, comprising administering to
the subject a compound or pharmaceutically acceptable salt of
formula I.
78. The method of claim 76, wherein the b-raf mutation is V600E,
T529I, or V600E/T529I.
79. A method of treating cancer in a subject, wherein the cancer
comprises b-raf activated tumors, comprising administering to the
subject a compound or pharmaceutically acceptable salt of formula
I.
80. A method of treating cancer in a subject, cancer comprises
b-raf activated tumors, wherein the subject is identified as being
in need of b-raf inhibition for the treatment of cancer, comprising
administering to the subject a compound or pharmaceutically
acceptable salt of formula I.
81. The method of claim 79 or 80, wherein the disease is melanoma,
lung cancer, colon cancer, breast cancer, prostate cancer, liver
cancer, pancreas cancer, brain cancer, kidney cancer, ovarian
cancer, stomach cancer, skin cancer, bone cancer, gastric cancer,
breast cancer, pancreatic cancer, glioma, gliobastoma,
hepatocellular carcinoma, papillary renal carcinoma, head and neck
squamous cell carcinoma, leukemias, lymphomas, myelomas, and solid
tumors.
82. The method of any one of claims 61-81, wherein the subject is a
human.
83. A kit comprising a compound or pharmaceutically acceptable salt
of formula I capable of inhibiting b-raf or b-raf mutation
activity; and instructions for use in treating cancer.
Description
RELATED APPLICATIONS
[0001] This application is a continuation of and claims priority
under 35 U.S.C. .sctn.120 to U.S. application, U.S. Ser. No.
13/519,826, filed Nov. 1, 2012, which is a national stage filing
under 35 U.S.C. .sctn.371 of international PCT application,
PCT/US2010/062310, filed Dec. 29, 2010, which claims priority under
35 U.S.C. .sctn.119(e) to U.S. provisional patent application, U.S.
Ser. No. 61/290,884, filed Dec. 29, 2009. The entire contents of
the above-referenced applications are incorporated herein by
reference.
TECHNICAL FIELD
[0002] The present invention relates to novel compounds which are
able to inhibit b-raf and b-raf mutations, and the use of such
compounds in the treatment of various diseases, disorders or
conditions.
BACKGROUND OF THE INVENTION
[0003] Receptor tyrosine kinases and serine/threonine kinases have
been implicated in cellular signaling pathways that control cell
function, division, growth, differentiation, and apoptosis through
reversible phosphorylation of the hydroxyl groups of tyrosine or
serine and threonine residues, respectively, in proteins. In signal
transduction, for example, extracellular signals are transduced via
membrane receptor activation, with amplification and propagation
using a complex choreography of cascades of protein
phosphorylation, and protein dephosphorylation events to avoid
uncontrolled signaling. These signaling pathways are highly
regulated, often by complex and intermeshed kinase pathways where
each kinase may itself be regulated by one or more other kinases
and protein phosphatases. The biological importance of these finely
tuned systems is such that a variety of cell proliferative
disorders have been linked to defects in one or more of the various
cell signaling pathways mediated by tyrosine or serine/threonine
kinases.
[0004] Receptor tyrosine kinases (RTKs) catalyze phosphorylation of
certain tyrosyl amino acid residues in various proteins, including
themselves, which govern cell growth, proliferation and
differentiation.
[0005] Downstream of the several RTKs lie several signaling
pathways, including the Ras-Raf-MEK-ERK kinase pathway. It is
currently understood that activation of Ras GTPase proteins in
response to growth factors, hormones, cytokines, etc. stimulates
phosphorylation and activation of Raf kinases. These kinases then
phosphorylate and activate the intracellular protein kinases MEK1
and MEK2, which in turn phosphorylate and activate other protein
kinases, ERK1 and 2. This signaling pathway, also known as the
mitogen-activated protein kinase (MAPK) pathway or cytoplasmic
cascade, mediates cellular responses to growth signals. The
ultimate function of this is to link receptor activity at the cell
membrane with modification of cytoplasmic or nuclear targets that
govern cell proliferation, differentiation, and survival. Mutations
in various Ras GTPases and the B-Raf kinase have been identified
that can lead to sustained and constitutive activation of the MAPK
pathway, ultimately resulting in increased cell division and
survival. As a consequence of this, these mutations have been
strongly linked with the establishment, development, and
progression of a wide range of human cancers. The biological role
of the Raf kinases, and specifically that of B-Raf, in signal
transduction is described in Davies, H., et al., Nature (2002)
9:1-6; Garnett, M. J. & Marais, R., Cancer Cell (2004)
6:313-319; Zebisch, A. & Troppmair, J., Cell. Mol. Life. Sci.
(2006) 63:1314-1330; Midgley, R. S. & Kerr, D. J., Crit. Rev.
One/Hematol. (2002) 44:109-120; Smith, R. A., et al., Curr. Top.
Med. Chem. (2006) 6:1071-1089; and Downward, J., Nat. Rev. Cancer
(2003) 3:11-22.
[0006] The "Erk pathway" is an intracellular signal transduction
pathway used by nearly all types of human cells to translate
extracellular signals to cellular decisions, including
proliferation, differentiation, senescence, or apoptosis (Wellbrock
et al., Nat. Rev. Mol. Cell Biol. 11:875-885 (2004)). One of the
invariant components of this pathway is the Ras GTPase, which
receives signals from membrane receptors and activates the Raf
protein kinases, which activate the Mek protein kinases, which in
turn activate the Erk protein kinases. Activated Erk kinases
phosphorylate a number of nuclear and cytoplasmic targets to
initiate various cellular decisions. The biological importance of
Raf in the Erk pathway is underscored by the finding that mutated
forms of Raf are associated with certain human malignancies (see
e.g. Monia et al., Nature Medicine 2:668-675 (1996); Davies et al.,
Nature 417:949-954 (2002)). Three distinct genes have been
identified in mammals that encode Raf proteins; a-Raf, b-Raf and
c-Raf (also known as Raf-1) and isoformic variants that result from
differential splicing of mRNA are known (Chong et al., EMBO J.
20:3716-3727 (2001)). The Erk pathway is mutationally activated in
a number of human cancers, most often by mutation of the Ras or
b-Raf genes. Mutations in Ras and b-Raf genes generally occur in
the same tumor types, including cancers of the colon, lung and
pancreas and melanoma, but are usually mutually exclusive. This
suggests that activation of either Ras or Raf is sufficient for
pathway activation and cancer progression.
[0007] Naturally occurring mutations of the B-Raf kinase that
activate MAPK pathway signaling have been found in a large
percentage of human melanomas (Davies (2002) supra) and thyroid
cancers (Cohen et al J. Nat. Cancer Inst. (2003) 95(8) 625-627 and
Kimura et al Cancer Res. (2003) 63(7) 1454-1457), as well as at
lower, but still significant, frequencies in the following:
Barret's adenocarcinoma, billiary tract carcinomas, breast cancer,
cervical cancer, cholangiocarcinoma, central nervous system tumors
including primary CNS tumors such as glioblastomas, astrocytomas
and ependymomas and secondary CNS tumors (i.e., metastases to the
central nervous system of tumors originating outside of the central
nervous system), colorectal cancer, including large intestinal
colon carcinoma, gastric cancer, carcinoma of the head and neck
including squamous cell carcinoma of the head and neck, hematologic
cancers including leukemias, acute myelogenous leukemia (AML),
myelodysplastic syndromes and chronic myelogenous leukemia;
Hodgkin's lymphoma, non-Hodgkin's lymphoma, megakaryoblastic
leukemia and multiple myeloma, hepatocellular carcinoma, lung
cancer, including small cell lung cancer and non-small cell lung
cancer, ovarian cancer, endometrial cancer, pancreatic cancer,
pituitary adenoma, prostate cancer, renal cancer, sarcoma, and skin
cancers.
[0008] By virtue of the role played by the Raf family kinases in
these cancers and exploratory studies with a range of preclinical
and therapeutic agents, including one selectively targeted to
inhibition of B-Raf kinase activity (King A. J., et al., (2006)
Cancer Res. 66:11100-11105), it is generally accepted that
inhibitors of one or more Raf family kinases will be useful for the
treatment of such cancers or other condition associated with Raf
kinase.
[0009] Mutation of B-Raf has also been implicated in other
conditions, including cardio-facio cutaneous syndrome
(Rodriguez-Viciana et al Science (2006) 311(5765) 1287-1290) and
polycystic kidney disease (Nagao et al Kidney Int. (2003) 63(2)
427-437).
[0010] Since tumor cells frequently become dependent to one or two
key signaling pathways for their survival (see, e.g. Jonkers et
al., Cancer Cell. 6:535-538 (2004)), the Erk pathway represents a
highly attractive target for drug intervention to treat cancer.
Protein kinases in general are considered desirable targets for
drug therapy, as evidenced by recent successes in targeting growth
factor receptor and intracellular tyrosine kinases. Inhibitors of
Mek have shown promise in clinical trials, however, there is ample
evidence to indicate Mek-independent Raf signaling that may also
contribute to cancer progression (Wellbrock et al, Nat. Rev. Mol.
Cell Biol. 11:875-885 (2004)). Therefore, targeting Raf kinases
promises an alternative and complementary approach to treating
tumors in which Ras or Raf genes are mutated.
SUMMARY OF THE INVENTION
[0011] In one aspect, the invention provides a compound of formula
I:
##STR00001##
[0012] or a pharmaceutically acceptable salt, ester or prodrug
thereof, wherein,
[0013] ring D is aryl or heteroaryl;
[0014] R is H, halo, or -A-B; [0015] A is NR.sub.AC(O), O,
S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, NR.sub.AC(O)NR.sub.A, or
absent; [0016] B is H, alkyl, alkoxy, cycloalkyl, or aryl, each of
which is optionally substituted;
[0017] R.sub.1 is hydroxyl, alkyl, alkoxy, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, or NR.sub.AR.sub.B, each of which may be
optionally substituted; or H or halo;
[0018] R' is absent, or R and R' together with the atoms to which
each is attached, form a cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl ring, each of which is optionally substituted;
[0019] Z is NR.sub.A, O, NR.sub.AC(O), C(O)NR.sub.A,
CR.sub.3R.sub.4 or S(O).sub.m;
[0020] R.sub.3 is H or alkyl;
[0021] R.sub.4 is H, alkyl, or absent;
[0022] or R.sub.3 and R.sub.4 together with the carbon to which
each is attached form C(O);
[0023] ring E is monocyclic or bicyclic heteroaryl;
[0024] R.sub.z is NR.sub.AR.sub.2; [0025] R.sub.2 is H, optionally
substituted aryl, optionally substituted heteroaryl, optionally
substituted heterocycloalkyl, C(O)R.sub.A, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or
[0026] C(NR.sub.B)OR.sub.A;
[0027] R.sub.5 is H, halo, alkyl, alkoxy, or thioalkoxy;
[0028] R.sub.6 is H, NR.sub.AR.sub.B, or OR.sub.A; [0029] each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; [0030] each R.sub.B is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; [0031] or, for each occurrence
of NR.sub.AR.sub.B, R.sub.A and R.sub.B are taken together with the
nitrogen atom to which they are attached to form a 3-7 membered
heterocycloalkyl ring;
[0032] each m is independently 0, 1, or 2; and
[0033] each n is independently 0 or 1.
[0034] In another aspect, the invention provides a pharmaceutical
composition comprising a compound of formula I, or a
pharmaceutically acceptable ester, salt, or prodrug thereof,
together with a pharmaceutically acceptable carrier.
[0035] In one aspect, the invention provides a method of inhibiting
a b-raf kinase in a subject, comprising administering to the
subject a compound of formula I.
[0036] In another aspect, the invention provides a method of
treating a disease related to kinase modulation in a subject
comprising administering to the subject a compound or
pharmaceutically acceptable salt of formula I;
[0037] wherein the kinase is selected from b-raf, Abl, Csf1R, EGFR,
EphA8, FGFR1,2,3,4, FLT3, KIT, Lok, MAP4K1, MUSK, p38alpha, beta,
PDGFRalpha, beta, Ret, Taok3, TNNI3K, Fes, Lyn SRPK1, STK36, TIE2,
DDR1, EPHA2, ROIK1, RIOK3, NKF1LK, Src, Tak1, BLK, EphA4, EphB2,
Fgr, FLT4, MAP4K2, ANKK1, Frk, Lck, Map4K5, Erbb4, Map4k4, MKNK2,
Tec, Flt1, Hck, Tnk2, Txk, BTK, SLK, RiPK1, RIPK2, BIKE, CIT,
CDKL2, DRAK, EphB1, JNK2, MLK1, MYLK2, TrkA,B,C, VEGFR2, IKKalpha,
PTK2B, MAP4K3, Tie2, Fyn, Zak, DDR2, AurC, Lyn, Hpk1, Gck.
[0038] In another aspect, the invention provides a method of
treating a disease related to b-raf or b-raf mutation modulation in
a subject comprising administering to the subject a compound or
pharmaceutically acceptable salt of formula I.
[0039] In other aspects, the invention provides a method of
treating a disease related to b-raf or b-raf mutation modulation in
a subject comprising: administering to the subject identified as in
need thereof a compound or pharmaceutically acceptable salt of
formula I.
[0040] In another aspect, the invention provides a method of
treating a disease related to b-raf or b-raf mutation modulation in
a subject, wherein the disease is resistant to drug resistant
mutations in b-raf, comprising administering to the subject a
compound or pharmaceutically acceptable salt of formula I.
[0041] In another aspect, the invention provides a method of
treating cancer in a subject, wherein the cancer comprises b-raf
activated tumors, comprising administering to the subject a
compound or pharmaceutically acceptable salt of formula I.
[0042] In certain aspects, the invention provides a method of
treating cancer in a subject, cancer comprises b-raf activated
tumors, wherein the subject is identified as being in need of b-raf
inhibition for the treatment of cancer, comprising administering to
the subject a compound or pharmaceutically acceptable salt of
formula I.
[0043] In another aspect, the invention provides a use of a
compound of the invention for the preparation of a medicament for
the treatment of cancer.
[0044] In another aspect, the invention provides a kit comprising a
compound or pharmaceutically acceptable salt of formula I capable
of inhibiting b-raf or b-raf mutation activity; and instructions
for use in treating cancer.
DESCRIPTION OF THE DRAWINGS
[0045] FIGS. 1A to 1E: Table 1 shows compounds synthesized using a
method described in Example 1.
[0046] FIGS. 2A to 2B: Table 2 shows compounds synthesized using a
method described in Example 2.
[0047] FIGS. 3A to 3E: Table 3 shows compounds synthesized using a
method described in Example 3.
[0048] FIGS. 4A to 4C: Table 4 shows compounds synthesized using a
method described in Example 4.
[0049] FIGS. 5A to 5G: Table 5 shows compounds synthesized using a
method described in Example 5.
[0050] FIGS. 6A to 6B: Table 6 shows compounds synthesized using a
method described in Example 6.
[0051] FIGS. 7A to 7D: Table 7 shows compounds synthesized using a
method described in Example 7.
[0052] FIG. 8: Table 8 shows compounds synthesized using a method
described in Example 8.
[0053] FIGS. 9A to 9C: Table 9 shows compounds synthesized using a
method described in Example 9.
[0054] FIGS. 10A to 10B: Table 10 shows compounds synthesized using
a method described in Example 10.
[0055] FIGS. 11A to 11B: Table 11 shows compounds synthesized using
a method described in Example 11.
[0056] FIGS. 12A to 12D: Table 12 shows compounds synthesized using
a method described in Example 12.
[0057] FIG. 13: Table 13 shows compounds synthesized using a method
described in Example 13.
[0058] FIG. 14A shows the dose response IC50 calculation for XI-1
compared to reference Raf inhibitors; FIG. 14B shows the compound
IC50 values on b-raf V600E transformed Ba/F3 cells.
[0059] FIGS. 15A to 15B: Summary of antiproliferative activity of
XI-1 against a variety of cancer cell lines.
[0060] FIG. 16A shows kinase targets of XI-1; FIG. 16B shows
additional kinase targets of XI-1.
[0061] FIGS. 17A to 17C: Additional targets of XI-1 determined
using a chemical proteomics approach.
[0062] FIGS. 18A to 18B: XI-1 can suppress B-RAF the `gatekeeper
mutation` T529I, which confers resistance in other B-RAF
inhibitors.
[0063] FIG. 19: Cellular proliferation IC.sub.50 in micromolar of
XI-1 against a panel of different cancer cell lines. IC.sub.50s
also shown for other reference kinase inhibitors in micromolar.
DETAILED DESCRIPTION OF THE INVENTION
Definitions
[0064] Listed below are definitions of various terms used to
describe this invention. These definitions apply to the terms as
they are used throughout this specification and claims, unless
otherwise limited in specific instances, either individually or as
part of a larger group.
[0065] The term "alkyl," as used herein, refers to saturated,
straight- or branched-chain hydrocarbon radicals containing, in
certain embodiments, between one and six, or one and eight carbon
atoms, respectively. Examples of C.sub.1-C.sub.6 alkyl radicals
include, but are not limited to, methyl, ethyl, propyl, isopropyl,
n-butyl, tert-butyl, neopentyl, n-hexyl radicals; and examples of
C.sub.1-C.sub.8 alkyl radicals include, but are not limited to,
methyl, ethyl, propyl, isopropyl, n-butyl, tert-butyl, neopentyl,
n-hexyl, heptyl, octyl radicals.
[0066] The term "alkenyl," as used herein, denotes a monovalent
group derived from a hydrocarbon moiety containing, in certain
embodiments, from two to six, or two to eight carbon atoms having
at least one carbon-carbon double bond. The double bond may or may
not be the point of attachment to another group. Alkenyl groups
include, but are not limited to, for example, ethenyl, propenyl,
butenyl, 1-methyl-2-buten-1-yl, heptenyl, octenyl and the like.
[0067] The term "alkynyl," as used herein, denotes a monovalent
group derived from a hydrocarbon moiety containing, in certain
embodiments, from two to six, or two to eight carbon atoms having
at least one carbon-carbon triple bond. The alkynyl group may or
may not be the point of attachment to another group. Representative
alkynyl groups include, but are not limited to, for example,
ethynyl, 1-propynyl, 1-butynyl, heptynyl, octynyl and the like.
[0068] The term "alkoxy" refers to an --O-alkyl radical.
[0069] The term "aryl," as used herein, refers to a mono- or
poly-cyclic carbocyclic ring system having one or more aromatic
rings, fused or non-fused, including, but not limited to, phenyl,
naphthyl, tetrahydronaphthyl, indanyl, idenyl and the like.
[0070] The term "aralkyl," as used herein, refers to an alkyl
residue attached to an aryl ring. Examples include, but are not
limited to, benzyl, phenethyl and the like.
[0071] The term "cycloalkyl" or "carbocyclic," as used herein,
denotes a monovalent group derived from a monocyclic or polycyclic
saturated or partially unsaturated carbocyclic ring compound.
Examples of C.sub.3-C.sub.8-cycloalkyl include, but not limited to,
cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cyclopentyl and
cyclooctyl; and examples of C.sub.3-C.sub.12-cycloalkyl include,
but not limited to, cyclopropyl, cyclobutyl, cyclopentyl,
cyclohexyl, bicyclo[2.2.1] heptyl, and bicyclo[2.2.2] octyl. Also
contemplated are a monovalent group derived from a monocyclic or
polycyclic carbocyclic ring compound having at least one
carbon-carbon double bond by the removal of a single hydrogen atom.
Examples of such groups include, but are not limited to,
cyclopropenyl, cyclobutenyl, cyclopentenyl, cyclohexenyl,
cycloheptenyl, cyclooctenyl, and the like.
[0072] The term "heteroaryl," as used herein, refers to a mono- or
poly-cyclic (e.g., bi-, or tri-cyclic or more) fused or non-fused,
radical or ring system having at least one aromatic ring, having
from five to ten ring atoms of which one ring atoms is selected
from S, O and N; zero, one or two ring atoms are additional
heteroatoms independently selected from S, O and N; and the
remaining ring atoms are carbon. Heteroaryl includes, but is not
limited to, pyridinyl, pyrazinyl, pyrimidinyl, pyrrolyl, pyrazolyl,
imidazolyl, thiazolyl, oxazolyl, isooxazolyl, thiadiazolyl,
oxadiazolyl, thiophenyl, furanyl, quinolinyl, isoquinolinyl,
benzimidazolyl, benzooxazolyl, quinoxalinyl, and the like.
[0073] The term "heteroaralkyl," as used herein, refers to an alkyl
residue attached to a heteroaryl ring. Examples include, but are
not limited to, pyridinylmethyl, pyrimidinylethyl and the like.
[0074] The term "heterocycloalkyl," as used herein, refers to a
non-aromatic 3-, 4-, 5-, 6- or 7-membered ring or a bi- or
tri-cyclic group fused of non-fused system, where (i) each ring
contains between one and three heteroatoms independently selected
from oxygen, sulfur and nitrogen, (ii) each 5-membered ring has 0
to 1 double bonds and each 6-membered ring has 0 to 2 double bonds,
(iii) the nitrogen and sulfur heteroatoms may optionally be
oxidized, (iv) the nitrogen heteroatom may optionally be
quaternized, and (iv) any of the above rings may be fused to a
benzene ring. Representative heterocycloalkyl groups include, but
are not limited to, [1,3]dioxolane, pyrrolidinyl, pyrazolinyl,
pyrazolidinyl, imidazolinyl, imidazolidinyl, piperidinyl,
piperazinyl, oxazolidinyl, isoxazolidinyl, morpholinyl,
thiazolidinyl, isothiazolidinyl, and tetrahydrofuryl.
[0075] The term "alkylamino" refers to a group having the structure
--NH(C.sub.1-C.sub.12 alkyl) where C.sub.1-C.sub.12 alkyl is as
previously defined.
[0076] The terms "hal," "halo" and "halogen," as used herein, refer
to an atom selected from fluorine, chlorine, bromine and
iodine.
[0077] As described herein, compounds of the invention may
optionally be substituted with one or more substituents, such as
are illustrated generally above, or as exemplified by particular
classes, subclasses, and species of the invention. It will be
appreciated that the phrase "optionally substituted" is used
interchangeably with the phrase "substituted or unsubstituted." In
general, the term "substituted", whether preceded by the term
"optionally" or not, refers to the replacement of hydrogen radicals
in a given structure with the radical of a specified substituent.
The term "optionally substituted," refers to groups that are
substituted or unsubstituted by independent replacement of one,
two, or three or more of the hydrogen atoms thereon with
substituents including, but not limited to:
[0078] -alkyl, cycloalkyl, aryl, heteroaryl, aralkyl,
[0079] --F, --Cl, --Br, --I,
[0080] --OH, protected hydroxy,
[0081] --NO.sub.2, --CN,
[0082] --NH.sub.2, protected amino, --NH--C.sub.1-C.sub.12-alkyl,
--NH--C.sub.2-C.sub.12-alkenyl, --NH--C.sub.2-C.sub.12-alkenyl,
--NH--C.sub.3-C.sub.12-cycloalkyl, --NH-aryl, --NH-heteroaryl,
--NH-heterocycloalkyl, -dialkylamino, -diarylamino,
-diheteroarylamino,
[0083] --O--C.sub.1-C.sub.12-alkyl, --O--C.sub.2-C.sub.12-alkenyl,
--O--C.sub.2-C.sub.12-alkenyl, --O--C.sub.3-C.sub.12-cycloalkyl,
--O-aryl, --O-heteroaryl, --O-heterocycloalkyl,
[0084] --C(O)--C.sub.1-C.sub.12-alkyl,
--C(O)--C.sub.2-C.sub.12-alkenyl, --C(O)--C.sub.2-C.sub.12-alkenyl,
--C(O)--C.sub.3-C.sub.12-cycloalkyl, --C(O)-aryl,
--C(O)-heteroaryl, --C(O)-heterocycloalkyl,
[0085] --CONH.sub.2, --CONH--C.sub.1-C.sub.12-alkyl,
--CONH--C.sub.2-C.sub.12-alkenyl, --CONH--C.sub.2-C.sub.12-alkenyl,
--CONH--C.sub.3-C.sub.12-cycloalkyl, --CONH-aryl,
--CONH-heteroaryl, --CONH-heterocycloalkyl,
[0086] --OCO.sub.2--C.sub.1-C.sub.12-alkyl,
--OCO.sub.2--C.sub.2-C.sub.12-alkenyl,
--OCO.sub.2--C.sub.2-C.sub.12-alkenyl,
--OCO.sub.2--C.sub.3-C.sub.12-cycloalkyl, --OCO.sub.2-aryl,
--OCO.sub.2-heteroaryl, --OCO.sub.2-heterocycloalkyl,
--OCONH.sub.2, --OCONH--C.sub.1-C.sub.12-alkyl,
--OCONH--C.sub.2-C.sub.12-alkenyl,
--OCONH--C.sub.2-C.sub.12-alkenyl,
--OCONH--C.sub.3-C.sub.12-cycloalkyl, --OCONH-aryl,
--OCONH-heteroaryl, --OCONH-heterocycloalkyl,
[0087] --NHC(O)--C.sub.1-C.sub.12-alkyl,
--NHC(O)--C.sub.2-C.sub.12-alkenyl,
--NHC(O)--C.sub.2-C.sub.12-alkenyl,
--NHC(O)--C.sub.3-C.sub.12-cycloalkyl, --NHC(O)-aryl,
--NHC(O)-heteroaryl, --NHC(O)-heterocycloalkyl,
--NHCO.sub.2--C.sub.1-C.sub.12-alkyl,
--NHCO.sub.2--C.sub.2-C.sub.12-alkenyl,
--NHCO.sub.2--C.sub.2-C.sub.12-alkenyl, --NHCO.sub.2--
C.sub.3-C.sub.12-cycloalkyl, --NHCO.sub.2-aryl,
--NHCO.sub.2-heteroaryl, --NHCO.sub.2-heterocycloalkyl,
--NHC(O)NH.sub.2, --NHC(O)NH--C.sub.1-C.sub.12-alkyl,
--NHC(O)NH--C.sub.2-C.sub.12-alkenyl,
--NHC(O)NH--C.sub.2-C.sub.12-alkenyl,
--NHC(O)NH--C.sub.3-C.sub.12-cycloalkyl, --NHC(O)NH-aryl,
--NHC(O)NH-heteroaryl, --NHC(O)NH-heterocycloalkyl, NHC(S)NH.sub.2,
--NHC(S)NH--C.sub.1-C.sub.12-alkyl,
--NHC(S)NH--C.sub.2-C.sub.12-alkenyl,
--NHC(S)NH--C.sub.2-C.sub.12-alkenyl,
--NHC(S)NH--C.sub.3-C.sub.12-cycloalkyl, --NHC(S)NH-aryl,
--NHC(S)NH-heteroaryl, --NHC(S)NH-heterocycloalkyl,
--NHC(NH)NH.sub.2, --NHC(NH)NH--C.sub.1-C.sub.12-alkyl,
--NHC(NH)NH--C.sub.2-C.sub.12-alkenyl,
--NHC(NH)NH--C.sub.2-C.sub.12-alkenyl,
--NHC(NH)NH--C.sub.3-C.sub.12-cycloalkyl, --NHC(NH)NH-aryl,
--NHC(NH)NH-heteroaryl, --NHC(NH)NH-heterocycloalkyl,
--NHC(NH)--C.sub.1-C.sub.12-alkyl,
--NHC(NH)--C.sub.2-C.sub.12-alkenyl,
--NHC(NH)--C.sub.2-C.sub.12-alkenyl,
--NHC(NH)--C.sub.3-C.sub.12-cycloalkyl, --NHC(NH)-aryl,
--NHC(NH)-heteroaryl, --NHC(NH)-heterocycloalkyl,
[0088] --C(NH)NH--C.sub.1-C.sub.12-alkyl,
--C(NH)NH--C.sub.2-C.sub.12-alkenyl,
--C(NH)NH--C.sub.2-C.sub.12-alkenyl,
--C(NH)NH--C.sub.3-C.sub.12-cycloalkyl, --C(NH)NH-aryl,
--C(NH)NH-heteroaryl, --C(NH)NH-- heterocycloalkyl,
[0089] --S(O)--C.sub.1-C.sub.12-alkyl,
--S(O)--C.sub.2-C.sub.12-alkenyl, --S(O)--C.sub.2-C.sub.12-alkenyl,
--S(O)--C.sub.3-C.sub.12-cycloalkyl, --S(O)-aryl,
--S(O)-heteroaryl, --S(O)-heterocycloalkyl --SO.sub.2NH.sub.2,
--SO.sub.2NH-- C.sub.1-C.sub.12-alkyl,
--SO.sub.2NH--C.sub.2-C.sub.12-alkenyl,
--SO.sub.2NH--C.sub.2-C.sub.12-alkenyl,
--SO.sub.2NH--C.sub.3-C.sub.12-cycloalkyl, --SO.sub.2NH-aryl,
--SO.sub.2NH-heteroaryl, --SO.sub.2NH-heterocycloalkyl,
[0090] --NHSO.sub.2--C.sub.1-C.sub.12-alkyl,
--NHSO.sub.2--C.sub.2-C.sub.12-alkenyl,
--NHSO.sub.2--C.sub.2-C.sub.12-alkenyl,
--NHSO.sub.2--C.sub.3-C.sub.12-cycloalkyl, --NHSO.sub.2-aryl,
--NHSO.sub.2-heteroaryl, --NHSO.sub.2-heterocycloalkyl,
[0091] --CH.sub.2NH.sub.2, --CH.sub.2SO.sub.2CH.sub.3, -aryl,
-arylalkyl, -heteroaryl, -heteroarylalkyl, -heterocycloalkyl,
--C.sub.3-C.sub.12-cycloalkyl, polyalkoxyalkyl, polyalkoxy,
-methoxymethoxy, -methoxyethoxy, --SH, --S--C.sub.1-C.sub.12-alkyl,
--S--C.sub.2-C.sub.12-alkenyl, --S--C.sub.2-C.sub.12-alkenyl,
--S--C.sub.3-C.sub.12-cycloalkyl, --S-aryl, --S-heteroaryl,
--S-heterocycloalkyl, or methylthiomethyl.
[0092] The term "cancer" includes, but is not limited to, the
following cancers: epidermoid Oral: buccal cavity, lip, tongue,
mouth, pharynx; Cardiac: sarcoma (angiosarcoma, fibrosarcoma,
rhabdomyosarcoma, liposarcoma), myxoma, rhabdomyoma, fibroma,
lipoma and teratoma; Lung: bronchogenic carcinoma (squamous cell or
epidermoid, undifferentiated small cell, undifferentiated large
cell, adenocarcinoma), alveolar (bronchiolar) carcinoma, bronchial
adenoma, sarcoma, lymphoma, chondromatous hamartoma, mesothelioma;
Gastrointestinal: esophagus (squamous cell carcinoma, larynx,
adenocarcinoma, leiomyosarcoma, lymphoma), stomach (carcinoma,
lymphoma, leiomyosarcoma), pancreas (ductal adenocarcinoma,
insulinoma, glucagonoma, gastrinoma, carcinoid tumors, vipoma),
small bowel or small intestines (adenocarcinoma, lymphoma,
carcinoid tumors, Karposi's sarcoma, leiomyoma, hemangioma, lipoma,
neurofibroma, fibroma), large bowel or large intestines
(adenocarcinoma, tubular adenoma, villous adenoma, hamartoma,
leiomyoma), colon, colon-rectum, colorectal; rectum, Genitourinary
tract: kidney (adenocarcinoma, Wilm's tumor (nephroblastoma,
lymphoma, leukemia), bladder and urethra (squamous cell carcinoma,
transitional cell carcinoma, adenocarcinoma), prostate
(adenocarcinoma, sarcoma), testis (seminoma, teratoma, embryonal
carcinoma, teratocarcinoma, choriocarcinoma, sarcoma, interstitial
cell carcinoma, fibroma, fibroadenoma, adenomatoid tumors, lipoma);
Liver: hepatoma (hepatocellular carcinoma), cholangiocarcinoma,
hepatoblastoma, angiosarcoma, hepatocellular adenoma, hemangioma,
biliary passages; Bone: osteogenic sarcoma (osteosarcoma),
fibrosarcoma, malignant fibrous histiocytoma, chondrosarcoma,
Ewing's sarcoma, malignant lymphoma (reticulum cell sarcoma),
myeloma, multiple myeloma, malignant giant cell tumor chordoma,
osteochronfroma (osteocartilaginous exostoses), benign chondroma,
chondroblastoma, chondromyxofibroma, osteoid osteoma and giant cell
tumors; Nervous system: skull (osteoma, hemangioma, granuloma,
xanthoma, osteitis deformans), meninges (meningioma,
meningiosarcoma, gliomatosis), brain (astrocytoma, medulloblastoma,
glioma, ependymoma, germinoma (pinealoma), glioblastoma multiform,
oligodendroglioma, schwannoma, retinoblastoma, congenital tumors),
spinal cord neurofibroma, meningioma, glioma, sarcoma;
Gynecological: uterus (endometrial carcinoma), cervix (cervical
carcinoma, pre-tumor cervical dysplasia), ovaries (ovarian
carcinoma (serous cystadenocarcinoma, mucinous cystadenocarcinoma,
unclassified carcinoma), granulosa-thecal cell tumors,
Sertoli-Leydig cell tumors, dysgerminoma, malignant teratoma),
vulva (squamous cell carcinoma, intraepithelial carcinoma,
adenocarcinoma, fibrosarcoma, melanoma), vagina (clear cell
carcinoma, squamous cell carcinoma, botryoid sarcoma (embryonal
rhabdomyosarcoma), fallopian tubes (carcinoma)), breast;
Hematologic: blood (myeloid leukemia (acute and chronic), acute
lymphoblastic leukemia, chronic lymphocytic leukemia,
myeloproliferative diseases, multiple myeloma, myelodysplastic
syndrome), Hodgkin's disease, non-Hodgkin's lymphoma (malignant
lymphoma) hairy cell; lymphoid disorders; Skin: malignant melanoma,
basal cell carcinoma, squamous cell carcinoma, Karposi's sarcoma,
keratoacanthoma, moles dysplastic nevi, lipoma, angioma,
dermatofibroma, keloids, psoriasis, Thyroid gland: papillary
thyroid carcinoma, follicular thyroid carcinoma; medullary thyroid
carcinoma, undifferentiated thyroid cancer, multiple endocrine
neoplasia type 2A, multiple endocrine neoplasia type 2B, familial
medullary thyroid cancer, pheochromocytoma, paraganglioma; and
Adrenal glands: neuroblastoma. Thus, the term "cancerous cell" as
provided herein, includes a cell afflicted by any one of the
above-identified conditions.
[0093] The term "subject" as used herein refers to a mammal. A
subject therefore refers to, for example, dogs, cats, horses, cows,
pigs, guinea pigs, and the like. Preferably the subject is a human.
When the subject is a human, the subject may be referred to herein
as a patient.
[0094] "Treat", "treating" and "treatment" refer to a method of
alleviating or abating a disease and/or its attendant symptoms.
[0095] As used herein, the term "pharmaceutically acceptable salt"
refers to those salts of the compounds formed by the process of the
present invention which are, within the scope of sound medical
judgment, suitable for use in contact with the tissues of humans
and lower animals without undue toxicity, irritation, allergic
response and the like, and are commensurate with a reasonable
benefit/risk ratio. Pharmaceutically acceptable salts are well
known in the art. For example, S. M. Berge, et al. describes
pharmaceutically acceptable salts in detail in J. Pharmaceutical
Sciences, 66: 1-19 (1977). The salts can be prepared in situ during
the final isolation and purification of the compounds of the
invention, or separately by reacting the free base function with a
suitable organic acid. Examples of pharmaceutically acceptable
include, but are not limited to, nontoxic acid addition salts are
salts of an amino group formed with inorganic acids such as
hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid
and perchloric acid or with organic acids such as acetic acid,
maleic acid, tartaric acid, citric acid, succinic acid or malonic
acid or by using other methods used in the art such as ion
exchange. Other pharmaceutically acceptable salts include, but are
not limited to, adipate, alginate, ascorbate, aspartate,
benzenesulfonate, benzoate, bisulfate, borate, butyrate,
camphorate, camphorsulfonate, citrate, cyclopentanepropionate,
digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate,
glucoheptonate, glycerophosphate, gluconate, hemisulfate,
heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate,
lactobionate, lactate, laurate, lauryl sulfate, malate, maleate,
malonate, methanesulfonate, 2-naphthalenesulfonate, nicotinate,
nitrate, oleate, oxalate, palmitate, pamoate, pectinate,
persulfate, 3-phenylpropionate, phosphate, picrate, pivalate,
propionate, stearate, succinate, sulfate, tartrate, thiocyanate,
p-toluenesulfonate, undecanoate, valerate salts, and the like.
Representative alkali or alkaline earth metal salts include sodium,
lithium, potassium, calcium, magnesium, and the like. Further
pharmaceutically acceptable salts include, when appropriate,
nontoxic ammonium, quaternary ammonium, and amine cations formed
using counterions such as halide, hydroxide, carboxylate, sulfate,
phosphate, nitrate, alkyl having from 1 to 6 carbon atoms,
sulfonate and aryl sulfonate.
[0096] As used herein, the term "pharmaceutically acceptable ester"
refers to esters of the compounds formed by the process of the
present invention which hydrolyze in vivo and include those that
break down readily in the human body to leave the parent compound
or a salt thereof. Suitable ester groups include, for example,
those derived from pharmaceutically acceptable aliphatic carboxylic
acids, particularly alkanoic, alkenoic, cycloalkanoic and
alkanedioic acids, in which each alkyl or alkenyl moiety
advantageously has not more than 6 carbon atoms. Examples of
particular esters include, but are not limited to, formates,
acetates, propionates, butyrates, acrylates and
ethylsuccinates.
[0097] The term "pharmaceutically acceptable prodrugs" as used
herein refers to those prodrugs of the compounds formed by the
process of the present invention which are, within the scope of
sound medical judgment, suitable for use in contact with the
tissues of humans and lower animals with undue toxicity,
irritation, allergic response, and the like, commensurate with a
reasonable benefit/risk ratio, and effective for their intended
use, as well as the zwitterionic forms, where possible, of the
compounds of the present invention. "Prodrug", as used herein means
a compound which is convertible in vivo by metabolic means (e.g. by
hydrolysis) to afford any compound delineated by the formulae of
the instant invention. Various forms of prodrugs are known in the
art, for example, as discussed in Bundgaard, (ed.), Design of
Prodrugs, Elsevier (1985); Widder, et al. (ed.), Methods in
Enzymology, vol. 4, Academic Press (1985); Krogsgaard-Larsen, et
al., (ed). "Design and Application of Prodrugs, Textbook of Drug
Design and Development, Chapter 5, 113-191 (1991); Bundgaard, et
al., Journal of Drug Deliver Reviews, 8:1-38(1992); Bundgaard, J.
of Pharmaceutical Sciences, 77:285 et seq. (1988); Higuchi and
Stella (eds.) Prodrugs as Novel Drug Delivery Systems, American
Chemical Society (1975); and Bernard Testa & Joachim Mayer,
"Hydrolysis In Drug And Prodrug Metabolism: Chemistry, Biochemistry
And Enzymology," John Wiley and Sons, Ltd. (2002).
[0098] This invention also encompasses pharmaceutical compositions
containing, and methods of treating disorders through
administering, pharmaceutically acceptable prodrugs of compounds of
the invention. For example, compounds of the invention having free
amino, amido, hydroxy or carboxylic groups can be converted into
prodrugs. Prodrugs include compounds wherein an amino acid residue,
or a polypeptide chain of two or more (e.g., two, three or four)
amino acid residues is covalently joined through an amide or ester
bond to a free amino, hydroxy or carboxylic acid group of compounds
of the invention. The amino acid residues include but are not
limited to the 20 naturally occurring amino acids commonly
designated by three letter symbols and also includes
4-hydroxyproline, hydroxyysine, demosine, isodemosine,
3-methylhistidine, norvalin, beta-alanine, gamma-aminobutyric acid,
citrulline, homocysteine, homoserine, ornithine and methionine
sulfone. Additional types of prodrugs are also encompassed. For
instance, free carboxyl groups can be derivatized as amides or
alkyl esters. Free hydroxy groups may be derivatized using groups
including but not limited to hemisuccinates, phosphate esters,
dimethylaminoacetates, and phosphoryloxymethyloxy carbonyls, as
outlined in Advanced Drug Delivery Reviews, 1996, 19, 1 15.
Carbamate prodrugs of hydroxy and amino groups are also included,
as are carbonate prodrugs, sulfonate esters and sulfate esters of
hydroxy groups. Derivatization of hydroxy groups as (acyloxy)methyl
and (acyloxy)ethyl ethers wherein the acyl group may be an alkyl
ester, optionally substituted with groups including but not limited
to ether, amine and carboxylic acid functionalities, or where the
acyl group is an amino acid ester as described above, are also
encompassed. Prodrugs of this type are described in J. Med. Chem.
1996, 39, 10. Free amines can also be derivatized as amides,
sulfonamides or phosphonamides. All of these prodrug moieties may
incorporate groups including but not limited to ether, amine and
carboxylic acid functionalities
[0099] Combinations of substituents and variables envisioned by
this invention are only those that result in the formation of
stable compounds. The term "stable", as used herein, refers to
compounds which possess stability sufficient to allow manufacture
and which maintains the integrity of the compound for a sufficient
period of time to be useful for the purposes detailed herein (e.g.,
therapeutic or prophylactic administration to a subject).
[0100] Compounds of the Invention
[0101] In one aspect, the invention provides a compound of formula
I:
##STR00002##
[0102] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0103] ring D is aryl or heteroaryl;
[0104] R is H, halo, or -A-B; [0105] A is NR.sub.AC(O), O,
S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, NR.sub.AC(O)NR.sub.A, or
absent; [0106] B is H, alkyl, alkoxy, cycloalkyl, or aryl, each of
which is optionally substituted;
[0107] R.sub.1 is hydroxyl, alkyl, alkoxy, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, or NR.sub.AR.sub.B, each of which may be
optionally substituted; or H or halo;
[0108] R' is absent, or R and R' together with the atoms to which
each is attached, form a cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl ring, each of which is optionally substituted;
[0109] Z is NR.sub.A, O, NR.sub.AC(O), C(O)NR.sub.A,
CR.sub.3R.sub.4 or S(O).sub.m;
[0110] R.sub.3 is H or alkyl;
[0111] R.sub.4 is H, alkyl, or absent;
[0112] or R.sub.3 and R.sub.4 together with the carbon to which
each is attached form C(O);
[0113] ring E is monocyclic or bicyclic heteroaryl;
[0114] R.sub.z is NR.sub.AR.sub.2; [0115] R.sub.2 is H, optionally
substituted aryl, optionally substituted heteroaryl, optionally
substituted heterocycloalkyl, C(O)R.sub.A, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or
C(NR.sub.B)OR.sub.A;
[0116] R.sub.5 is H, halo, alkyl, alkoxy, or thioalkoxy;
[0117] R.sub.6 is H, NR.sub.AR.sub.B, or OR.sub.A; [0118] each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; [0119] each R.sub.B is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; [0120] or, for each occurrence
of NR.sub.AR.sub.B, R.sub.A and R.sub.B are taken together with the
nitrogen atom to which they are attached to form a 3-7 membered
heterocycloalkyl ring;
[0121] each m is independently 0, 1, or 2; and
[0122] each n is independently 0 or 1.
[0123] In certain embodiments, ring D is selected from phenyl,
naphthyl, tetrahydronaphthyl, indanyl, idenyl, pyridinyl,
pyrazinyl, pyrimidinyl, pyrrolyl, pyrazolyl, pyrrolo pyridinyl,
thiazolo pyridinyl, imidazolyl, thiazolyl, oxazolyl, isooxazolyl,
thiadiazolyl, oxadiazolyl, thiophenyl, furanyl, indazolyl,
indolonyl, quinolinyl, isoquinolinyl, benzimidazolyl,
benzooxazolyl, and quinoxalinyl.
[0124] In a further embodiment, ring D is selected from phenyl,
naphthyl, pyrazinyl, pyrimidinyl, pyrrolo pyridinyl, thiazolo
pyridinyl, indazolyl, indolonyl, and quinolinyl.
[0125] In another embodiment, ring E is selected from phenyl,
naphthyl, tetrahydronaphthyl, indanyl, idenyl, pyridinyl,
pyrazinyl, pyrimidinyl, pyrrolyl, pyrazolyl, imidazolyl, thiazolyl,
oxazolyl, isooxazolyl, thiophenyl, furanyl, indazolyl, indolonyl,
quinolinyl, isoquinolinyl, quinazolinyl, 1H-pyrrolo[2,3-b]pyridine,
9H-purine, 7H-pyrrolo[2,3-d]pyrimidine,
1H-pyrazolo[3,4-d]pyrimidine, and quinoxalinyl.
[0126] In a further embodiment, ring E is selected from phenyl,
naphthyl, pyridinyl, pyrazinyl, and pyrimidinyl.
[0127] In a first embodiment, the invention provides a compound of
formula II:
##STR00003##
[0128] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0129] Z is NH or O;
[0130] R is H or -A-B; [0131] A is NR.sub.AC(O), O, S(O).sub.m,
C(O), C(O)O, C(O)NR.sub.A, or absent; [0132] B is alkyl, alkoxy, or
aryl, each of which is optionally substituted;
[0133] R.sub.1 is H, alkyl, alkoxy, or halo; each of which may be
optionally substituted;
[0134] R.sub.2 is H, C(O)R.sub.A, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or C(NR.sub.B)OR.sub.A;
[0135] each R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; [0136] each R.sub.B is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; and
[0137] m is 0, 1, or 2.
[0138] In certain embodiments, R.sub.2 is H, C(O)R.sub.A,
C(O)OR.sub.A, or C(O)NR.sub.AR.sub.B.
[0139] In a further embodiment, each R.sub.A is independently H,
alkyl, or cycloalkyl, each of which may be optionally substituted;
and R.sub.B is H.
[0140] In other embodiments, R.sub.2 is H,
##STR00004##
[0141] In certain embodiments, R.sub.1 is H, alkyl, alkoxy, or
halo.
[0142] In a further embodiment, R.sub.1 is H, methyl, methoxy, or
chloro.
[0143] In other embodiments, R is H or -A-B; A is NR.sub.AC(O),
C(O), C(O)O, C(O)NR.sub.A, or absent; and B is alkyl, alkoxy, or
aryl, each of which is optionally substituted.
[0144] In a further embodiment, A is NHC(O), C(O)O, C(O)NH, or
absent.
[0145] In a further embodiment, B is phenyl, methyl, or methoxy;
each of which is optionally substituted.
[0146] In other further embodiments, B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, or hydroxyl, each of which is
optionally substituted.
[0147] In certain embodiments, R is selected from H, methyl,
methoxy,
##STR00005## ##STR00006##
[0148] In a second embodiment, the invention provides a compound of
formula III:
##STR00007##
[0149] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0150] ring D is aryl or heteroaryl;
[0151] R is H, halo, or -A-B; [0152] A is NR.sub.AC(O), O,
S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent; [0153] B is H,
alkyl, cycloalkyl, or aryl, each of which is optionally
substituted;
[0154] R.sub.1 is H, hydroxyl, alkyl, alkoxy, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, NR.sub.AR.sub.B, or halo; each of which may be
optionally substituted;
[0155] R' is absent, or R and R' together with the atoms to which
each is attached, form a cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl ring, each of which is optionally substituted;
[0156] R.sub.2 is H, optionally substituted aryl, optionally
substituted heteroaryl, optionally substituted heterocycloalkyl,
C(O)R.sub.A, C(O)OR.sub.A, C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A,
or C(NR.sub.B)OR.sub.A; [0157] each R.sub.A is independently H,
alkyl, alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each
of which may be optionally substituted; [0158] each R.sub.B is
independently H, alkyl, alkenyl, cycloalkyl, heterocyclic, aryl or
heteroaryl, each of which may be optionally substituted; and
[0159] m is 0, 1, or 2.
[0160] In certain embodiments, R.sub.2 is H, optionally substituted
aryl, or optionally substituted heteroaryl.
[0161] In other embodiments, R.sub.2 is H, phenyl, pyridyl,
pyrimidinyl, each of which is optionally substituted.
[0162] In a further embodiment, R.sub.2 is H,
##STR00008##
[0163] In various embodiments, ring D is phenyl, pyrrolo pyridine,
benzothiazole, indazole, pyrazine, or indolinone.
[0164] In other embodiments, R.sub.1 is H, hydroxyl, alkyl,
NR.sub.AR.sub.B, or halo; each of which may be optionally
substituted.
[0165] In other embodiments, R is H, halo, or -A-B; A is
NR.sub.AC(O), O, S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent;
and B is alkyl, cycloalkyl, or aryl, each of which is optionally
substituted.
[0166] In various embodiments, A is NHC(O), C(O)O, C(O)NH, or
absent.
[0167] In a further embodiment, B is H, alkyl, cycloalkyl, or aryl,
each of which is optionally substituted.
[0168] In another further embodiment, B is optionally substituted
with alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
[0169] In other embodiments, R is H, methyl, Cl, F, COOH,
C(O)NHCH.sub.3,
##STR00009##
[0170] In a third embodiment, the invention provides a compound of
formula IV:
##STR00010##
[0171] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0172] R is H or -A-B; [0173] A is NR.sub.AC(O), O, S(O).sub.m,
C(O), C(O)O, C(O)NR.sub.A, or absent; [0174] B is alkyl or aryl,
each of which is optionally substituted;
[0175] R.sub.1 is H, alkyl, alkoxy, or halo; each of which may be
optionally substituted;
[0176] Z is NR.sub.A, O, or S(O).sub.m;
[0177] R.sub.3 is H or alkyl;
[0178] R.sub.4 is H or alkyl;
[0179] or R.sub.3 and R.sub.4 together with the carbon to which
each is attached form C(O);
[0180] R.sub.5 is H, halo, alkoxy, or thioalkoxy, each R.sub.A is
independently H, alkyl, alkenyl, cycloalkyl, heterocyclic, aryl or
heteroaryl, each of which may be optionally substituted; and
[0181] each m is independently 0, 1, or 2.
[0182] In one embodiment, Z is NR.sub.A or O; R.sub.3 is H; R.sub.4
is H; or R.sub.3 and R.sub.4 together with the carbon to which each
is attached form C(O).
[0183] In a further embodiment, Z is NH or O.
[0184] In certain embodiments, R.sub.5 is H, halo, alkoxy, or
thioalkoxy.
[0185] In a further embodiment, R.sub.5 is H, Cl, methoxy, or
S(i-Pr).
[0186] In other embodiments, R.sub.1 is H, alkyl, or alkoxy; each
of which may be optionally substituted.
[0187] In another embodiment, R is -A-B; A is NR.sub.AC(O) or
C(O)NR.sub.A; and B is alkyl or aryl, each of which is optionally
substituted.
[0188] In various embodiments, A is NHC(O) or C(O)NH.
[0189] In other embodiments, B is alkyl or aryl, each of which is
optionally substituted.
[0190] In a further embodiment, B is optionally substituted with
alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
[0191] In another embodiment, R is
##STR00011## ##STR00012##
[0192] In a fourth embodiment, the invention provides a compound of
formula V:
##STR00013##
[0193] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0194] R is H or -A-B; [0195] A is NR.sub.AC(O), O, S(O).sub.m,
C(O), C(O)O, C(O)NR.sub.A, or absent; [0196] B is alkyl or aryl,
each of which is optionally substituted;
[0197] R.sub.1 is H, alkyl, alkoxy, or halo; each of which may be
optionally substituted;
[0198] R.sub.5 is H, halo, alkoxy, or thioalkoxy, [0199] each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; and
[0200] m is 0, 1, or 2.
[0201] In one embodiment, R.sub.5 is halo or alkoxy.
[0202] In a further embodiment, R.sub.5 is Cl or methoxy.
[0203] In other embodiments, R.sub.1 is alkyl, which may be
optionally substituted.
[0204] In certain embodiments, R is -A-B; A is NR.sub.AC(O) or
C(O)NR.sub.A; and B is alkyl or aryl, each of which is optionally
substituted.
[0205] In a further embodiment, A is NHC(O) or C(O)NH.
[0206] In a further embodiment, B is alkyl or aryl, each of which
is optionally substituted.
[0207] In a further embodiment, B is optionally substituted with
alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
[0208] In certain embodiments, R is
##STR00014##
[0209] In a fifth embodiment, the invention provides a compound of
formula VI:
##STR00015##
[0210] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0211] ring D is aryl or heteroaryl;
[0212] R is H, halo, or -A-B; [0213] A is NR.sub.AC(O), O,
S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A, or absent; [0214] B is
alkyl, cycloalkyl, or aryl, each of which is optionally
substituted;
[0215] R.sub.1 is H, hydroxyl, alkyl, alkoxy, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, NR.sub.AR.sub.B, or halo; each of which may be
optionally substituted;
[0216] R.sub.6 is H, NR.sub.AR.sub.B, or OR.sub.A;
[0217] R.sub.5 is H, halo, alkoxy, or thioalkoxy, [0218] each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; [0219] each R.sub.B is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; and
[0220] m is 0, 1, or 2.
[0221] In one embodiment, R.sub.6 is H or NR.sub.AR.sub.B.
[0222] In certain embodiments, R.sub.A is an optionally substituted
aryl and R.sub.B is H.
[0223] In other embodiments, R.sub.5 is H or Cl.
[0224] In another embodiment, ring D is phenyl, naphthyl,
indolonyl, or quinolinyl.
[0225] In a further embodiment, R.sub.1 is H.
[0226] In another further embodiment, R is -A-B; A is NR.sub.AC(O)
or C(O)NR.sub.A; and B is alkyl or aryl, each of which is
optionally substituted.
[0227] In a further embodiment, A is NHC(O) or C(O)NH.
[0228] In another further embodiment, B is alkyl or phenyl, each of
which is optionally substituted.
[0229] In a further embodiment, B is optionally substituted with
alkyl, alkenyl, alkynyl, haloalkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, halo, or hydroxyl, each of
which is optionally substituted.
[0230] In certain embodiments, R is
##STR00016##
[0231] In certain embodiments, the invention provides a compound of
formula VII:
##STR00017##
[0232] or a pharmaceutically acceptable salt, ester or prodrug
thereof,
wherein,
[0233] ring D is aryl;
[0234] A is NR.sub.AC(O), O, S(O).sub.m, C(O), C(O)O, C(O)NR.sub.A,
NR.sub.AC(O)NR.sub.A, or absent;
[0235] B is H, alkyl, alkoxy, cycloalkyl, or aryl, each of which is
optionally substituted;
[0236] Z is NR.sub.A, O, NR.sub.AC(O), C(O)NR.sub.A, or
S(O).sub.m;
[0237] ring E is monocyclic or bicyclic heteroaryl;
[0238] R.sub.z is NR.sub.AR.sub.2; [0239] R.sub.2 is H, optionally
substituted aryl, optionally substituted heteroaryl, optionally
substituted heterocycloalkyl, C(O)R.sub.A, C(O)OR.sub.A,
C(O)NR.sub.AR.sub.B, C(NR.sub.B)R.sub.A, or
C(NR.sub.B)OR.sub.A;
[0240] R.sub.5 is H, halo, alkyl, alkoxy, or thioalkoxy;
[0241] R.sub.6 is H, NR.sub.AR.sub.B, or OR.sub.A; [0242] each
R.sub.A is independently H, alkyl, alkenyl, cycloalkyl,
heterocyclic, aryl or heteroaryl, each of which may be optionally
substituted; [0243] each R.sub.B is independently H, alkyl,
alkenyl, cycloalkyl, heterocyclic, aryl or heteroaryl, each of
which may be optionally substituted; and each n is independently 0
or 1.
[0244] In another aspect, the invention provides a pharmaceutical
composition comprising a compound of formula I, or a
pharmaceutically acceptable ester, salt, or prodrug thereof,
together with a pharmaceutically acceptable carrier.
[0245] Representative compounds of the invention include, but are
not limited to, the following compounds found in FIGS. 1A to 13
(and Tables 1-13) and the Examples below.
[0246] The invention also provides for a pharmaceutical composition
comprising a compound of formula I, or a pharmaceutically
acceptable ester, salt, or prodrug thereof, together with a
pharmaceutically acceptable carrier.
[0247] In another aspect, the invention provides a method of method
of synthesizing a compound of formula I.
[0248] The synthesis of the compounds of the invention can be found
in the Examples below.
[0249] Another embodiment is a method of making a compound of any
of the formulae herein using any one, or combination of, reactions
delineated herein. The method can include the use of one or more
intermediates or chemical reagents delineated herein.
[0250] Another aspect is an isotopically labeled compound of any of
the formulae delineated herein. Such compounds have one or more
isotope atoms which may or may not be radioactive (e.g., .sup.3H,
.sup.2H, .sup.14C, .sup.13C, .sup.35S, .sup.32P, .sup.15I, and
.sup.131I) introduced into the compound. Such compounds are useful
for drug metabolism studies and diagnostics, as well as therapeutic
applications.
[0251] A compound of the invention can be prepared as a
pharmaceutically acceptable acid addition salt by reacting the free
base form of the compound with a pharmaceutically acceptable
inorganic or organic acid. Alternatively, a pharmaceutically
acceptable base addition salt of a compound of the invention can be
prepared by reacting the free acid form of the compound with a
pharmaceutically acceptable inorganic or organic base.
[0252] Alternatively, the salt forms of the compounds of the
invention can be prepared using salts of the starting materials or
intermediates.
[0253] The free acid or free base forms of the compounds of the
invention can be prepared from the corresponding base addition salt
or acid addition salt from, respectively. For example a compound of
the invention in an acid addition salt form can be converted to the
corresponding free base by treating with a suitable base (e.g.,
ammonium hydroxide solution, sodium hydroxide, and the like). A
compound of the invention in a base addition salt form can be
converted to the corresponding free acid by treating with a
suitable acid (e.g., hydrochloric acid, etc.).
[0254] Prodrug derivatives of the compounds of the invention can be
prepared by methods known to those of ordinary skill in the art
(e.g., for further details see Saulnier et al., (1994), Bioorganic
and Medicinal Chemistry Letters, Vol. 4, p. 1985). For example,
appropriate prodrugs can be prepared by reacting a non-derivatized
compound of the invention with a suitable carbamylating agent
(e.g., 1,1-acyloxyalkylcarbanochloridate, para-nitrophenyl
carbonate, or the like).
[0255] Protected derivatives of the compounds of the invention can
be made by means known to those of ordinary skill in the art. A
detailed description of techniques applicable to the creation of
protecting groups and their removal can be found in T. W. Greene,
"Protecting Groups in Organic Chemistry", 3.sup.rd edition, John
Wiley and Sons, Inc., 1999.
[0256] Compounds of the present invention can be conveniently
prepared, or formed during the process of the invention, as
solvates (e.g., hydrates). Hydrates of compounds of the present
invention can be conveniently prepared by recrystallization from an
aqueous/organic solvent mixture, using organic solvents such as
dioxin, tetrahydrofuran or methanol.
[0257] Acids and bases useful in the methods herein are known in
the art. Acid catalysts are any acidic chemical, which can be
inorganic (e.g., hydrochloric, sulfuric, nitric acids, aluminum
trichloride) or organic (e.g., camphorsulfonic acid,
p-toluenesulfonic acid, acetic acid, ytterbium triflate) in nature.
Acids are useful in either catalytic or stoichiometric amounts to
facilitate chemical reactions. Bases are any basic chemical, which
can be inorganic (e.g., sodium bicarbonate, potassium hydroxide) or
organic (e.g., triethylamine, pyridine) in nature. Bases are useful
in either catalytic or stoichiometric amounts to facilitate
chemical reactions.
[0258] In addition, some of the compounds of this invention have
one or more double bonds, or one or more asymmetric centers. Such
compounds can occur as racemates, racemic mixtures, single
enantiomers, individual diastereomers, diastereomeric mixtures, and
cis- or trans- or E- or Z-double isomeric forms, and other
stereoisomeric forms that may be defined, in terms of absolute
stereochemistry, as (R)- or (S)-, or as (D)- or (L)- for amino
acids. All such isomeric forms of these compounds are expressly
included in the present invention. Optical isomers may be prepared
from their respective optically active precursors by the procedures
described above, or by resolving the racemic mixtures. The
resolution can be carried out in the presence of a resolving agent,
by chromatography or by repeated crystallization or by some
combination of these techniques which are known to those skilled in
the art. Further details regarding resolutions can be found in
Jacques, et al., Enantiomers, Racemates, and Resolutions (John
Wiley & Sons, 1981). The compounds of this invention may also
be represented in multiple tautomeric forms, in such instances, the
invention expressly includes all tautomeric forms of the compounds
described herein (e.g., alkylation of a ring system may result in
alkylation at multiple sites, the invention expressly includes all
such reaction products). When the compounds described herein
contain olefinic double bonds or other centers of geometric
asymmetry, and unless specified otherwise, it is intended that the
compounds include both E and Z geometric isomers. Likewise, all
tautomeric forms are also intended to be included. The
configuration of any carbon-carbon double bond appearing herein is
selected for convenience only and is not intended to designate a
particular configuration unless the text so states; thus a
carbon-carbon double bond depicted arbitrarily herein as trans may
be cis, trans, or a mixture of the two in any proportion. All such
isomeric forms of such compounds are expressly included in the
present invention. All crystal forms of the compounds described
herein are expressly included in the present invention.
[0259] The synthesized compounds can be separated from a reaction
mixture and further purified by a method such as column
chromatography, high pressure liquid chromatography, or
recrystallization. As can be appreciated by the skilled artisan,
further methods of synthesizing the compounds of the formulae
herein will be evident to those of ordinary skill in the art.
Additionally, the various synthetic steps may be performed in an
alternate sequence or order to give the desired compounds. In
addition, the solvents, temperatures, reaction durations, etc.
delineated herein are for purposes of illustration only and one of
ordinary skill in the art will recognize that variation of the
reaction conditions can produce the desired bridged macrocyclic
products of the present invention. Synthetic chemistry
transformations and protecting group methodologies (protection and
deprotection) useful in synthesizing the compounds described herein
are known in the art and include, for example, those such as
described in R. Larock, Comprehensive Organic Transformations, VCH
Publishers (1989); T. W. Greene and P. G. M. Wuts, Protective
Groups in Organic Synthesis, 2d. Ed., John Wiley and Sons (1991);
L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic
Synthesis, John Wiley and Sons (1994); and L. Paquette, ed.,
Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons
(1995), and subsequent editions thereof.
[0260] The compounds of this invention may be modified by appending
various functionalities via any synthetic means delineated herein
to enhance selective biological properties. Such modifications are
known in the art.
[0261] The compounds of the invention are defined herein by their
chemical structures and/or chemical names. Where a compound is
referred to by both a chemical structure and a chemical name, and
the chemical structure and chemical name conflict, the chemical
structure is determinative of the compound's identity.
[0262] The recitation of a listing of chemical groups in any
definition of a variable herein includes definitions of that
variable as any single group or combination of listed groups. The
recitation of an embodiment for a variable herein includes that
embodiment as any single embodiment or in combination with any
other embodiments or portions thereof.
[0263] Methods of the Invention
[0264] In one aspect, the invention provides a method of inhibiting
a b-raf kinase in a subject, comprising administering to the
subject a compound of formula I.
[0265] In one embodiment, the b-raf kinase is a mutation.
[0266] In another embodiment, the b-raf kinase mutation is V600E,
T529I, or V600E/T529I.
[0267] In another aspect, the invention provides a method of
treating a disease related to kinase modulation in a subject
comprising administering to the subject a compound or
pharmaceutically acceptable salt of formula I;
[0268] wherein the kinase is selected from b-raf, Abl, Csf1R, EGFR,
EphA8, FGFR1,2,3,4, FLT3, KIT, Lok, MAP4K1, MUSK, p38alpha, beta,
PDGFRalpha, beta, Ret, Taok3, TNNI3K, Fes, Lyn SRPK1, STK36, TIE2,
DDR1, EPHA2, ROIK1, RIOK3, NKF1LK, Src, Tak1, BLK, EphA4, EphB2,
Fgr, FLT4, MAP4K2, ANKK1, Frk, Lck, Map4K5, Erbb4, Map4k4, MKNK2,
Tec, Flt1, Hck, Tnk2, Txk, BTK, SLK, RiPK1, RIPK2, BIKE, CIT,
CDKL2, DRAK, EphB1, JNK2, MLK1, MYLK2, TrkA,B,C, VEGFR2, IKKalpha,
PTK2B, MAP4K3, Tie2, Fyn, Zak, DDR2, AurC, Lyn, Hpk1, and Gck.
[0269] In one embodiment, the kinase is selected from b-raf b-raf,
Abl, Csf1R, EGFR, EphA8, FGFR1,2,3,4, FLT3, KIT, Lok, MAP4K1, MUSK,
p38alpha, beta, PDGFRalpha, beta, Ret, Taok3, TNNI3K, Fes, Lyn
SRPK1, STK36, TIE2, DDR1, EPHA2, ROIK1, RIOK3, NKF1LK, Src, Tak1,
BLK, EphA4, EphB2, Fgr, FLT4, MAP4K2, ANKK1, Frk, Lck, Map4K5,
Erbb4, Map4k4, MKNK2, Tec, Flt1, Hck, Tnk2, Txk, BTK, SLK, RiPK1,
RIPK2, BIKE, CIT, CDKL2, DRAK, EphB1, JNK2, MLK1, MYLK2, TrkA,B,C,
VEGFR2, IKKalpha, PTK2B, MAP4K3, Tie2, Fyn, Zak, DDR2, AurC, Lyn,
Hpk1, and Gck.
[0270] In another aspect, the invention provides a method of
treating a disease related to b-raf or b-raf mutation modulation in
a subject comprising administering to the subject a compound or
pharmaceutically acceptable salt of formula I.
[0271] In other aspects, the invention provides a method of
treating a disease related to b-raf or b-raf mutation modulation in
a subject comprising: administering to the subject identified as in
need thereof a compound or pharmaceutically acceptable salt of
formula I.
[0272] In various embodiments, the modulation is inhibition.
[0273] In other embodiments, the b-raf mutation is V600E, T529I, or
V600E/T529I
[0274] In certain embodiments, the disease is cancer or a
proliferation disease.
[0275] In a further embodiment, the disease is melanoma, lung
cancer, colon cancer, breast cancer, prostate cancer, liver cancer,
pancreas cancer, brain cancer, kidney cancer, ovarian cancer,
stomach cancer, skin cancer, bone cancer, gastric cancer, breast
cancer, pancreatic cancer, glioma, glioblastoma, hepatocellular
carcinoma, papillary renal carcinoma, head and neck squamous cell
carcinoma, leukemias, lymphomas, myelomas, or solid tumors.
[0276] In certain embodiments, the subject is administered an
additional therapeutic agent.
[0277] In a further embodiment, the compound and the additional
therapeutic agent are administered simultaneously or
sequentially.
[0278] In various embodiments, the additional therapeutic is a
b-raf inhibitor.
[0279] In one embodiment, the additional therapeutic is a clinical
b-raf inhibitor that directly targets the b-raf ATP site.
[0280] In a further embodiment, the additional therapeutic is
sorafenib, Raf265, AZ628, PLX-4032, PLX-4720, gefitinib, erlotinib,
lapatinib, XL-647, HKI-272, BIBW2992, AV-412, CI-1033, PF00299804,
BMS 690514, cetuximab, panitumumab, or matuzumab.
[0281] In another aspect, the invention provides a method of
treating a disease related to b-raf or b-raf mutation modulation in
a subject, wherein the disease is resistant to drug resistant
mutations in b-raf, comprising administering to the subject a
compound or pharmaceutically acceptable salt of formula I.
[0282] In certain embodiments, the b-raf mutation is V600E, T529I,
or V600E/T529I.
[0283] In another aspect, the invention provides a method of
treating cancer in a subject, wherein the cancer comprises b-raf
activated tumors, comprising administering to the subject a
compound or pharmaceutically acceptable salt of formula I.
[0284] In certain aspects, the invention provides a method of
treating cancer in a subject, cancer comprises b-raf activated
tumors, wherein the subject is identified as being in need of b-raf
inhibition for the treatment of cancer, comprising administering to
the subject a compound or pharmaceutically acceptable salt of
formula I.
[0285] In various embodiments, the disease is melanoma, lung
cancer, colon cancer, breast cancer, prostate cancer, liver cancer,
pancreas cancer, brain cancer, kidney cancer, ovarian cancer,
stomach cancer, skin cancer, bone cancer, gastric cancer, breast
cancer, pancreatic cancer, glioma, glioblastoma, hepatocellular
carcinoma, papillary renal carcinoma, head and neck squamous cell
carcinoma, leukemias, lymphomas, myelomas, or solid tumors.
[0286] In certain embodiments, the invention provides a method as
described above wherein the subject is a human.
[0287] In another aspect, the invention provides a kit comprising a
compound or pharmaceutically acceptable salt of formula I capable
of inhibiting b-raf or b-raf mutation activity; and instructions
for use in treating cancer.
[0288] In certain aspects, the invention provides type II kinase
inhibitors that target the mutant (V600E) b-raf pathway. Such
compounds are weak direct inhibitors of b-raf and predominantly
target a number of kinases upstream of b-raf. Thus, the compounds
of the invention are b-raf pathway inhibitors.
[0289] In another embodiment, the present invention provides a
method for treating or lessening the severity of a kinase disease,
condition, or disorder where inhibition of a kinase is implicated
in the treatment of the disease, wherein the kinase is selected
from ABL1, ABL2, BRAF, CSF1R, EGFR, EPHA8, FGFR4, FLT3, KIT, LOK,
MAP4K1, MUSK, p38-beta, PDGFRA, PDGFRB, RET, TAOK3, or TNNI3K.
[0290] In other embodiments, present invention provides a method
for treating or lessening the severity of a kinase disease,
condition, or disorder where inhibition of a kinase is implicated
in the treatment of the disease, wherein the kinase is selected
from FES, LYN, p38-alpha, SRPK1, STK36, TIE2, DDR1, EPHA2, RIOK1,
RIOK3, SNF1LK, SRC, TAK1, BLK, EPHA4, EPHB2, FGR, FLT4, MAP4K2,
ANKK1, FRK, LCK, MAP4K5, EGFR, ERBB4, MAP4K4, MKNK2, TEC, FLT1,
HCK, TNK2, TXK, BTK, SLK, RIPK1, RIPK2, BIKE, CIT, CDKL2, DRAK1,
EPHB1, JNK2, BRAF, MLK1, MYLK2, TRKB, VEGFR2, YES, IKK-alpha,
PTK2B, MAP4K3, TIE1, FYN, FGFR1, ZAK, DDR2, RAF1, or AURKC.
[0291] In other embodiments, present invention provides a method
for treating or lessening the severity of a kinase disease,
condition, or disorder where inhibition of a kinase is implicated
in the treatment of the disease, wherein the kinase is selected
from LYN, CSK, ABL1/2, TAO1/3, HPK1, FGR, p38a, FES, FER, TAO2,
KHS1/2, AurA/B/C, MAP3K2, PYK2, MPSK1, p38a, NEK9, PKD1/2, LOK,
IRAK4, MST2, NEK9, PLK1, MST1, CK2a2, GSK3A, CDK7, AMPKa1/2, IRE1,
AurA, MARK3, p38d/g, KSER, PIP5K2a, STLK5, MAP2K4, PITSLRE, CDK2,
RSK1/2/3, PHKg2, PLK2, CDK10, Erk1/2, CaMK2g, NEK6/7, DYRK1B, CDK6,
CDK5, CHK1, SYK, GSK3B, Wnk1/2/4, RPS6KC1, p38d, DMPK1, PKCa/b,
SMG1, ROCK1/2, MAP3K5, CHED, BARK1/2, MST4, YSK1, CK1a, BRAF, PKR,
PKN2, LKB1, or STLK5.
[0292] In another aspect, the present invention provides a method
for treating or lessening the severity of a kinase disease,
condition, or disorder where inhibition of b-raf is implicated in
the treatment of the disease.
[0293] As inhibitors of b-raf kinases, the compounds and
compositions of this invention are particularly useful for treating
or lessening the severity of a disease, condition, or disorder
where b-raf is implicated in the disease, condition, or disorder.
In one aspect, the present invention provides a method for treating
or lessening the severity of a disease, condition, or disorder
where related to b-raf. In one embodiment, the disease is related
to a mutant b-raf such as V600E.
[0294] In another aspect, the present invention provides a method
for treating or lessening the severity of a kinase disease,
condition, or disorder where inhibition of b-raf is implicated in
the treatment of the disease.
[0295] In other aspects, the invention is directed towards provides
a method for treating or lessening the severity of a b-raf related
disease, condition, or disorder wherein b-raf mutations have
provided for resistance to known drugs. In one embodiment, the
mutation is T5291I.
[0296] In a further embodiment, the disease is melanoma, lung
cancer, colon cancer, breast cancer, prostate cancer, liver cancer,
pancreas cancer, brain cancer, kidney cancer, ovarian cancer,
stomach cancer, skin cancer, melanoma, leukemia, bone cancer,
gastric cancer, breast cancer, pancreatic cancer, glioma,
glioblastoma, hepatocellular carcinoma, papillary renal carcinoma,
head and neck squamous cell carcinoma, leukemias, lymphomas,
myelomas, solid tumors, colorectal cancer, epithelial call-derived
neoplasia (epithelial carcinoma), basal cell carcinoma,
adenocarcinoma, gastrointestinal cancer, lip cancer, mouth cancer,
esophageal cancer, small bowel cancer, stomach cancer, bladder
cancer, cervical cancer, squamous cell and/or basal cell cancers,
prostate cancer, renal cell carcinoma, or other known cancers that
affect epithelial cells throughout the body.
[0297] This invention further embraces the treatment or prevention
of cell proliferative disorders such as hyperplasias, dysplasias
and pre-cancerous lesions. Dysplasia is the earliest form of
pre-cancerous lesion recognizable in a biopsy by a pathologist. The
subject compounds may be administered for the purpose of preventing
said hyperplasias, dysplasias or pre-cancerous lesions from
continuing to expand or from becoming cancerous. Examples of
pre-cancerous lesions may occur in skin, esophageal tissue, breast
and cervical intra-epithelial tissue.
[0298] In other embodiments, the disease is inflammation,
arthritis, rheumatoid arthritis, spondylarthropathies, gouty
arthritis, osteoarthritis, juvenile arthritis, and other arthritic
conditions, systemic lupus erthematosus (SLE), skin-related
conditions, psoriasis, eczema, burns, dermatitis,
neuroinflammation, allergy, pain, neuropathic pain, fever,
pulmonary disorders, lung inflammation, adult respiratory distress
syndrome, pulmonary sarcoisosis, asthma, silicosis, chronic
pulmonary inflammatory disease, and chronic obstructive pulmonary
disease (COPD), cardiovascular disease, arteriosclerosis,
myocardial infarction (including post-myocardial infarction
indications), thrombosis, congestive heart failure, cardiac
reperfusion injury, as well as complications associated with
hypertension and/or heart failure such as vascular organ damage,
restenosis, cardiomyopathy, stroke including ischemic and
hemorrhagic stroke, reperfusion injury, renal reperfusion injury,
ischemia including stroke and brain ischemia, and ischemia
resulting from cardiac/coronary bypass, neurodegenerative
disorders, liver disease and nephritis, gastrointestinal
conditions, inflammatory bowel disease, Crohn's disease, gastritis,
irritable bowel syndrome, ulcerative colitis, ulcerative diseases,
gastric ulcers, viral and bacterial infections, sepsis, septic
shock, gram negative sepsis, malaria, meningitis, HIV infection,
opportunistic infections, cachexia secondary to infection or
malignancy, cachexia secondary to acquired immune deficiency
syndrome (AIDS), AIDS, ARC (AIDS related complex), pneumonia,
herpes virus, myalgias due to infection, influenza, autoimmune
disease, graft vs. host reaction and allograft rejections,
treatment of bone resorption diseases, osteoporosis, multiple
sclerosis, cancer, angiogenesis including neoplasia, metastasis,
central nervous system disorders, central nervous system disorders
having an inflammatory or apoptotic component, Alzheimer's disease,
Parkinson's disease, Huntington's disease, amyotrophic lateral
sclerosis, spinal cord injury, peripheral neuropathy, or Canine
B-Cell Lymphoma.
[0299] In a further embodiment, the disease is inflammation,
arthritis, rheumatoid arthritis, spondylarthropathies, gouty
arthritis, osteoarthritis, juvenile arthritis, and other arthritic
conditions, systemic lupus erthematosus (SLE), skin-related
conditions, psoriasis, eczema, dermatitis, pain, pulmonary
disorders, lung inflammation, adult respiratory distress syndrome,
pulmonary sarcoisosis, asthma, chronic pulmonary inflammatory
disease, and chronic obstructive pulmonary disease (COPD),
cardiovascular disease, arteriosclerosis, myocardial infarction
(including post-myocardial infarction indications), congestive
heart failure, cardiac reperfusion injury, inflammatory bowel
disease, Crohn's disease, gastritis, irritable bowel syndrome,
leukemia, or lymphoma.
[0300] In some embodiments, said method is used to treat or prevent
a condition selected from autoimmune diseases, inflammatory
diseases, proliferative and hyperproliferative diseases,
immunologically-mediated diseases, bone diseases, metabolic
diseases, neurological and neurodegenerative diseases,
cardiovascular diseases, hormone related diseases, allergies,
asthma, and Alzheimer's disease. In other embodiments, said
condition is selected from a proliferative disorder and a
neurodegenerative disorder.
[0301] In certain embodiments, the disease is cancer. In a further
embodiment, the disease is melanoma.
[0302] In certain embodiments, the invention provides a method of
treatment of any of the disorders described herein, wherein the
subject is a human.
[0303] As inhibitors of b-raf kinases and b-raf mutations thereof,
the compounds and compositions of this invention are also useful in
biological samples. One aspect of the invention relates to
inhibiting b-raf kinase activity in a biological sample, which
method comprises contacting said biological sample with a compound
of the invention or a composition comprising said compound. The
term "biological sample", as used herein, means an in vitro or an
ex vivo sample, including, without limitation, cell cultures or
extracts thereof; biopsied material obtained from a mammal or
extracts thereof; and blood, saliva, urine, feces, semen, tears, or
other body fluids or extracts thereof. Inhibition of b-raf kinase
activity in a biological sample is useful for a variety of purposes
that are known to one of skill in the art. Examples of such
purposes include, but are not limited to, blood transfusion,
organ-transplantation, and biological specimen storage.
[0304] Another aspect of this invention relates to the study of
b-raf kinases, and mutations thereof, in biological and
pathological phenomena; the study of intracellular signal
transduction pathways mediated by such protein kinases; and the
comparative evaluation of new protein kinase inhibitors. Examples
of such uses include, but are not limited to, biological assays
such as enzyme assays and cell-based assays.
[0305] The activity of the compounds as b-raf kinase inhibitors may
be assayed in vitro, in vivo or in a cell line. In vitro assays
include assays that determine inhibition of either the kinase
activity or ATPase activity of the activated kinase. Alternate in
vitro assays quantitate the ability of the inhibitor to bind to the
protein kinase and may be measured either by radiolabelling the
inhibitor prior to binding, isolating the inhibitor/kinase complex
and determining the amount of radiolabel bound, or by running a
competition experiment where new inhibitors are incubated with the
kinase bound to known radioligands.
[0306] In accordance with the foregoing, the present invention
further provides a method for preventing or treating any of the
diseases or disorders described above in a subject in need of such
treatment, which method comprises administering to said subject a
therapeutically effective amount of a compound of the invention or
a pharmaceutically acceptable salt thereof. For any of the above
uses, the required dosage will vary depending on the mode of
administration, the particular condition to be treated and the
effect desired.
Combination Therapy
[0307] Compounds of the invention can be administered in
therapeutically effective amounts in combination with one or more
therapeutic agents (pharmaceutical combinations). For example,
synergistic effects can occur with other anti-proliferative,
anti-cancer, immunomodulatory or anti-inflammatory substances.
Where the compounds of the invention are administered in
conjunction with other therapies, dosages of the co-administered
compounds will of course vary depending on the type of co-drug
employed, on the specific drug employed, on the condition being
treated and so forth.
[0308] Combination therapy includes the administration of the
subject compounds in further combination with other biologically
active ingredients (such as, but not limited to, a second and
different antineoplastic agent) and non-drug therapies (such as,
but not limited to, surgery or radiation treatment). For instance,
the compounds of the invention can be used in combination with
other pharmaceutically active compounds, preferably compounds that
are able to enhance the effect of the compounds of the invention.
The compounds of the invention can be administered simultaneously
(as a single preparation or separate preparation) or sequentially
to the other drug therapy. In general, a combination therapy
envisions administration of two or more drugs during a single cycle
or course of therapy.
[0309] In one aspect, the present invention provides a method for
treating or lessening the severity of a kinase disease, condition,
or disorder where inhibition of b-raf is implicated in the
treatment of the disease, and the use of a b-raf inhibitor compound
of the invention is used in combination with any current clinical
b-raf inhibitor that directly targets the b-raf ATP site. Such
compounds include Sorafenib, Raf265, SB-590885, PLX4032, PLX4720,
or AZ628, some of which are provided below:
##STR00018##
[0310] In one aspect of the invention, the compounds may be
administered in combination with one or more separate agents that
modulate protein kinases involved in various disease states.
Examples of such kinases may include, but are not limited to:
serine/threonine specific kinases, receptor tyrosine specific
kinases and non-receptor tyrosine specific kinases.
Serine/threonine kinases include mitogen activated protein kinases
(MAPK), meiosis specific kinase (MEK), RAF and aurora kinase.
Examples of receptor kinase families include epidermal growth
factor receptor (EGFR) (e.g. HER2/neu, HER3, HER4, ErbB, ErbB2,
ErbB3, ErbB4, Xmrk, DER, Let23); fibroblast growth factor (FGF)
receptor (e.g. FGF-R1, GFF-R2/BEK/CEK3, FGF-R3/CEK2, FGF-R4/TKF,
KGF-R); hepatocyte growth/scatter factor receptor (HGFR) (e.g.,
MET, RON, SEA, SEX); insulin receptor (e.g. IGFI-R); Eph (e.g.
CEK5, CEK8, EBK, ECK, EEK, EHK-1, EHK-2, ELK, EPH, ERK, HEK, MDK2,
MDK5, SEK); Axl (e.g. Mer/Nyk, Rse); RET; and platelet-derived
growth factor receptor (PDGFR) (e.g. PDGF.alpha.-R, PDG.beta.-R,
CSF1-R/FMS, SCF-R/C-KIT, VEGF-R/FLT, NEK/FLK1, FLT3/FLK2/STK-1).
Non-receptor tyrosine kinase families include, but are not limited
to, BCR-ABL (e.g. p43.sup.abl, ARG); BTK (e.g. ITK/EMT, TEC); CSK,
FAK, FPS, JAK, SRC, BMX, FER, CDK and SYK.
[0311] In another aspect of the invention, the subject compounds
may be administered in combination with one or more agents that
modulate non-kinase biological targets or processes. Such targets
include histone deacetylases (HDAC), DNA methyltransferase (DNMT),
heat shock proteins (e.g. HSP90), and proteosomes.
[0312] In a preferred embodiment, subject compounds may be combined
with antineoplastic agents (e.g. small molecules, monoclonal
antibodies, antisense RNA, and fusion proteins) that inhibit one or
more biological targets such as Zolinza, Tarceva, Iressa, Tykerb,
Gleevec, Sutent, Sprycel, Nexavar, Sorafinib, CNF2024, RG108,
BMS387032, Affinitak, Avastin, Herceptin, Erbitux, AG24322,
PD325901, ZD6474, PD184322, Obatodax, ABT737 and AEE788. Such
combinations may enhance therapeutic efficacy over efficacy
achieved by any of the agents alone and may prevent or delay the
appearance of resistant mutational variants.
[0313] In certain preferred embodiments, the compounds of the
invention are administered in combination with a chemotherapeutic
agent. Chemotherapeutic agents encompass a wide range of
therapeutic treatments in the field of oncology. These agents are
administered at various stages of the disease for the purposes of
shrinking tumors, destroying remaining cancer cells left over after
surgery, inducing remission, maintaining remission and/or
alleviating symptoms relating to the cancer or its treatment.
Examples of such agents include, but are not limited to, alkylating
agents such as mustard gas derivatives (Mechlorethamine,
cylophosphamide, chlorambucil, melphalan, ifosfamide),
ethylenimines (thiotepa, hexamethylmelanine), Alkylsulfonates
(Busulfan), Hydrazines and Triazines (Altretamine, Procarbazine,
Dacarbazine and Temozolomide), Nitrosoureas (Carmustine, Lomustine
and Streptozocin), Ifosfamide and metal salts (Carboplatin,
Cisplatin, and Oxaliplatin); plant alkaloids such as
Podophyllotoxins (Etoposide and Tenisopide), Taxanes (Paclitaxel
and Docetaxel), Vinca alkaloids (Vincristine, Vinblastine,
Vindesine and Vinorelbine), and Camptothecan analogs (Irinotecan
and Topotecan); anti-tumor antibiotics such as Chromomycins
(Dactinomycin and Plicamycin), Anthracyclines (Doxorubicin,
Daunorubicin, Epirubicin, Mitoxantrone, Valrubicin and Idarubicin),
and miscellaneous antibiotics such as Mitomycin, Actinomycin and
Bleomycin; anti-metabolites such as folic acid antagonists
(Methotrexate, Pemetrexed, Raltitrexed, Aminopterin), pyrimidine
antagonists (5-Fluorouracil, Floxuridine, Cytarabine, Capecitabine,
and Gemcitabine), purine antagonists (6-Mercaptopurine and
6-Thioguanine) and adenosine deaminase inhibitors (Cladribine,
Fludarabine, Mercaptopurine, Clofarabine, Thioguanine, Nelarabine
and Pentostatin); topoisomerase inhibitors such as topoisomerase I
inhibitors (Irinotecan, topotecan) and topoisomerase II inhibitors
(Amsacrine, etoposide, etoposide phosphate, teniposide); monoclonal
antibodies (Alemtuzumab, Gemtuzumab ozogamicin, Rituximab,
Trastuzumab, Ibritumomab Tioxetan, Cetuximab, Panitumumab,
Tositumomab, Bevacizumab); and miscellaneous anti-neoplastics such
as ribonucleotide reductase inhibitors (Hydroxyurea);
adrenocortical steroid inhibitor (Mitotane); enzymes (Asparaginase
and Pegaspargase); anti-microtubule agents (Estramustine); and
retinoids (Bexarotene, Isotretinoin, Tretinoin (ATRA).
[0314] In certain preferred embodiments, the compounds of the
invention are administered in combination with a chemoprotective
agent. Chemoprotective agents act to protect the body or minimize
the side effects of chemotherapy. Examples of such agents include,
but are not limited to, amfostine, mesna, and dexrazoxane.
[0315] In one aspect of the invention, the subject compounds are
administered in combination with radiation therapy. Radiation is
commonly delivered internally (implantation of radioactive material
near cancer site) or externally from a machine that employs photon
(x-ray or gamma-ray) or particle radiation. Where the combination
therapy further comprises radiation treatment, the radiation
treatment may be conducted at any suitable time so long as a
beneficial effect from the co-action of the combination of the
therapeutic agents and radiation treatment is achieved. For
example, in appropriate cases, the beneficial effect is still
achieved when the radiation treatment is temporally removed from
the administration of the therapeutic agents, perhaps by days or
even weeks.
[0316] It will be appreciated that compounds of the invention can
be used in combination with an immunotherapeutic agent. One form of
immunotherapy is the generation of an active systemic
tumor-specific immune response of host origin by administering a
vaccine composition at a site distant from the tumor. Various types
of vaccines have been proposed, including isolated tumor-antigen
vaccines and anti-idiotype vaccines. Another approach is to use
tumor cells from the subject to be treated, or a derivative of such
cells (reviewed by Schirrmacher et al. (1995) J. Cancer Res. Clin.
Oncol. 121:487). In U.S. Pat. No. 5,484,596, Hanna Jr. et al. claim
a method for treating a resectable carcinoma to prevent recurrence
or metastases, comprising surgically removing the tumor, dispersing
the cells with collagenase, irradiating the cells, and vaccinating
the patient with at least three consecutive doses of about 10.sup.7
cells.
[0317] It will be appreciated that the compounds of the invention
may advantageously be used in conjunction with one or more
adjunctive therapeutic agents. Examples of suitable agents for
adjunctive therapy include a 5HT.sub.1 agonist, such as a triptan
(e.g. sumatriptan or naratriptan); an adenosine A1 agonist; an EP
ligand; an NMDA modulator, such as a glycine antagonist; a sodium
channel blocker (e.g. lamotrigine); a substance P antagonist (e.g.
an NK.sub.1 antagonist); a cannabinoid; acetaminophen or
phenacetin; a 5-lipoxygenase inhibitor; a leukotriene receptor
antagonist; a DMARD (e.g. methotrexate); gabapentin and related
compounds; a tricyclic antidepressant (e.g. amitryptilline); a
neurone stabilising antiepileptic drug; a mono-aminergic uptake
inhibitor (e.g. venlafaxine); a matrix metalloproteinase inhibitor;
a nitric oxide synthase (NOS) inhibitor, such as an iNOS or an nNOS
inhibitor; an inhibitor of the release, or action, of tumour
necrosis factor a; an antibody therapy, such as a monoclonal
antibody therapy; an antiviral agent, such as a nucleoside
inhibitor (e.g. lamivudine) or an immune system modulator (e.g.
interferon); an opioid analgesic; a local anaesthetic; a stimulant,
including caffeine; an H.sub.2-antagonist (e.g. ranitidine); a
proton pump inhibitor (e.g. omeprazole); an antacid (e.g. aluminium
or magnesium hydroxide; an antiflatulent (e.g. simethicone); a
decongestant (e.g. phenylephrine, phenylpropanolamine,
pseudoephedrine, oxymetazoline, epinephrine, naphazoline,
xylometazoline, propylhexedrine, or levo-desoxyephedrine); an
antitussive (e.g. codeine, hydrocodone, carmiphen, carbetapentane,
or dextramethorphan); a diuretic; or a sedating or non-sedating
antihistamine.
[0318] In certain embodiments, these compositions optionally
further comprise one or more additional therapeutic agents. For
example, chemotherapeutic agents or other antiproliferative agents
may be combined with the compounds of this invention to treat
proliferative diseases and cancer. Examples of known
chemotherapeutic agents include, but are not limited to,
Gleevec.TM., adriamycin, dexamethasone, vincristine,
cyclophosphamide, fluorouracil, topotecan, taxol, interferons, and
platinum derivatives.
[0319] Other examples of agents the compounds of this invention may
also be combined with include, without limitation: treatments for
Alzheimer's Disease such as Aricept18 and Excelon.RTM.; treatments
for Parkinson's Disease such as L-DOPA/carbidopa, entacapone,
ropinrole, pramipexole, bromocriptine, pergolide, trihexephendyl,
and amantadine; agents for treating Multiple Sclerosis (MS) such as
beta interferon (e.g., Avonex.RTM. and Rebif.RTM.), Copaxone.RTM.,
and mitoxantrone; treatments for asthma such as albuterol and
Singulair.RTM.; agents for treating schizophrenia such as zyprexa,
risperdal, seroquel, and haloperidol; anti-inflammatory agents such
as corticosteroids, TNF blockers, IL-I RA, azathioprine,
cyclophosphamide, and sulfasalazine; immunomodulatory and
immunosuppressive agents such as cyclosporin, tacrolimus,
rapamycin, mycophenolate mofetil, interferons, corticosteroids,
cyclophophamide, azathioprine, and sulfasalazine; neurotrophic
factors such as acetylcholinesterase inhibitors, MAO inhibitors,
interferons, anti-convulsants, ion channel blockers, riluzole, and
antiparkinsonian agents; agents for treating cardiovascular disease
such as beta-blockers, ACE inhibitors, diuretics, nitrates, calcium
channel blockers, and statins; agents for treating liver disease
such as corticosteroids, cholestyramine, interferons, and
anti-viral agents; agents for treating blood disorders such as
corticosteroids, antileukemic agents, and growth factors; and
agents for treating immunodeficiency disorders such as gamma
globulin.
[0320] Pharmaceutical Compositions
[0321] In another aspect, the invention provides a pharmaceutical
composition comprising a compound of formula I, or a
pharmaceutically acceptable ester, salt, or prodrug thereof,
together with a pharmaceutically acceptable carrier.
[0322] Compounds of the invention can be administered as
pharmaceutical compositions by any conventional route, in
particular enterally, e.g., orally, e.g., in the form of tablets or
capsules, or parenterally, e.g., in the form of injectable
solutions or suspensions, topically, e.g., in the form of lotions,
gels, ointments or creams, or in a nasal or suppository form.
Pharmaceutical compositions comprising a compound of the present
invention in free form or in a pharmaceutically acceptable salt
form in association with at least one pharmaceutically acceptable
carrier or diluent can be manufactured in a conventional manner by
mixing, granulating or coating methods. For example, oral
compositions can be tablets or gelatin capsules comprising the
active ingredient together with a) diluents, e.g., lactose,
dextrose, sucrose, mannitol, sorbitol, cellulose and/or glycine; b)
lubricants, e.g., silica, talcum, stearic acid, its magnesium or
calcium salt and/or polyethyleneglycol; for tablets also c)
binders, e.g., magnesium aluminum silicate, starch paste, gelatin,
tragacanth, methylcellulose, sodium carboxymethylcellulose and or
polyvinylpyrrolidone; if desired d) disintegrants, e.g., starches,
agar, alginic acid or its sodium salt, or effervescent mixtures;
and/or e) absorbents, colorants, flavors and sweeteners. Injectable
compositions can be aqueous isotonic solutions or suspensions, and
suppositories can be prepared from fatty emulsions or suspensions.
The compositions may be sterilized and/or contain adjuvants, such
as preserving, stabilizing, wetting or emulsifying agents, solution
promoters, salts for regulating the osmotic pressure and/or
buffers. In addition, they may also contain other therapeutically
valuable substances. Suitable formulations for transdermal
applications include an effective amount of a compound of the
present invention with a carrier. A carrier can include absorbable
pharmacologically acceptable solvents to assist passage through the
skin of the host. For example, transdermal devices are in the form
of a bandage comprising a backing member, a reservoir containing
the compound optionally with carriers, optionally a rate
controlling barrier to deliver the compound to the skin of the host
at a controlled and predetermined rate over a prolonged period of
time, and means to secure the device to the skin. Matrix
transdermal formulations may also be used. Suitable formulations
for topical application, e.g., to the skin and eyes, are preferably
aqueous solutions, ointments, creams or gels well-known in the art.
Such may contain solubilizers, stabilizers, tonicity enhancing
agents, buffers and preservatives.
[0323] The pharmaceutical compositions of the present invention
comprise a therapeutically effective amount of a compound of the
present invention formulated together with one or more
pharmaceutically acceptable carriers. As used herein, the term
"pharmaceutically acceptable carrier" means a non-toxic, inert
solid, semi-solid or liquid filler, diluent, encapsulating material
or formulation auxiliary of any type. The pharmaceutical
compositions of this invention can be administered to humans and
other animals orally, rectally, parenterally, intracisternally,
intravaginally, intraperitoneally, topically (as by powders,
ointments, or drops), buccally, or as an oral or nasal spray.
[0324] Liquid dosage forms for oral administration include
pharmaceutically acceptable emulsions, microemulsions, solutions,
suspensions, syrups and elixirs. In addition to the active
compounds, the liquid dosage forms may contain inert diluents
commonly used in the art such as, for example, water or other
solvents, solubilizing agents and emulsifiers such as ethyl
alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl
alcohol, benzyl benzoate, propylene glycol, 1,3-butylene glycol,
dimethylformamide, oils (in particular, cottonseed, groundnut,
corn, germ, olive, castor, and sesame oils), glycerol,
tetrahydrofurfuryl alcohol, polyethylene glycols and fatty acid
esters of sorbitan, and mixtures thereof. Besides inert diluents,
the oral compositions can also include adjuvants such as wetting
agents, emulsifying and suspending agents, sweetening, flavoring,
and perfuming agents.
[0325] Injectable preparations, for example, sterile injectable
aqueous or oleaginous suspensions may be formulated according to
the known art using suitable dispersing or wetting agents and
suspending agents. The sterile injectable preparation may also be a
sterile injectable solution, suspension or emulsion in a nontoxic
parenterally acceptable diluent or solvent, for example, as a
solution in 1,3-butanediol. Among the acceptable vehicles and
solvents that may be employed are water, Ringer's solution, U.S.P.
and isotonic sodium chloride solution. In addition, sterile, fixed
oils are conventionally employed as a solvent or suspending medium.
For this purpose any bland fixed oil can be employed including
synthetic mono- or diglycerides. In addition, fatty acids such as
oleic acid are used in the preparation of injectables.
[0326] In order to prolong the effect of a drug, it is often
desirable to slow the absorption of the drug from subcutaneous or
intramuscular injection. This may be accomplished by the use of a
liquid suspension of crystalline or amorphous material with poor
water solubility. The rate of absorption of the drug then depends
upon its rate of dissolution which, in turn, may depend upon
crystal size and crystalline form. Alternatively, delayed
absorption of a parenterally administered drug form is accomplished
by dissolving or suspending the drug in an oil vehicle.
[0327] Compositions for rectal or vaginal administration are
preferably suppositories which can be prepared by mixing the
compounds of this invention with suitable non-irritating excipients
or carriers such as cocoa butter, polyethylene glycol or a
suppository wax which are solid at ambient temperature but liquid
at body temperature and therefore melt in the rectum or vaginal
cavity and release the active compound.
[0328] Solid compositions of a similar type may also be employed as
fillers in soft and hard-filled gelatin capsules using such
excipients as lactose or milk sugar as well as high molecular
weight polyethylene glycols and the like.
[0329] The active compounds can also be in micro-encapsulated form
with one or more excipients as noted above. The solid dosage forms
of tablets, dragees, capsules, pills, and granules can be prepared
with coatings and shells such as enteric coatings, release
controlling coatings and other coatings well known in the
pharmaceutical formulating art. In such solid dosage forms the
active compound may be admixed with at least one inert diluent such
as sucrose, lactose or starch. Such dosage forms may also comprise,
as is normal practice, additional substances other than inert
diluents, e.g., tableting lubricants and other tableting aids such
a magnesium stearate and microcrystalline cellulose. In the case of
capsules, tablets and pills, the dosage forms may also comprise
buffering agents.
[0330] Dosage forms for topical or transdermal administration of a
compound of this invention include ointments, pastes, creams,
lotions, gels, powders, solutions, sprays, inhalants or patches.
The active component is admixed under sterile conditions with a
pharmaceutically acceptable carrier and any needed preservatives or
buffers as may be required. Ophthalmic formulation, ear drops, eye
ointments, powders and solutions are also contemplated as being
within the scope of this invention.
[0331] The ointments, pastes, creams and gels may contain, in
addition to an active compound of this invention, excipients such
as animal and vegetable fats, oils, waxes, paraffins, starch,
tragacanth, cellulose derivatives, polyethylene glycols, silicones,
bentonites, silicic acid, talc and zinc oxide, or mixtures
thereof.
[0332] Powders and sprays can contain, in addition to the compounds
of this invention, excipients such as lactose, talc, silicic acid,
aluminum hydroxide, calcium silicates and polyamide powder, or
mixtures of these substances. Sprays can additionally contain
customary propellants such as chlorofluorohydrocarbons.
[0333] Transdermal patches have the added advantage of providing
controlled delivery of a compound to the body. Such dosage forms
can be made by dissolving or dispensing the compound in the proper
medium. Absorption enhancers can also be used to increase the flux
of the compound across the skin. The rate can be controlled by
either providing a rate controlling membrane or by dispersing the
compound in a polymer matrix or gel.
[0334] According to the methods of treatment of the present
invention, disorders are treated or prevented in a subject, such as
a human or other animal, by administering to the subject a
therapeutically effective amount of a compound of the invention, in
such amounts and for such time as is necessary to achieve the
desired result. The term "therapeutically effective amount" of a
compound of the invention, as used herein, means a sufficient
amount of the compound so as to decrease the symptoms of a disorder
in a subject. As is well understood in the medical arts a
therapeutically effective amount of a compound of this invention
will be at a reasonable benefit/risk ratio applicable to any
medical treatment.
[0335] In general, compounds of the invention will be administered
in therapeutically effective amounts via any of the usual and
acceptable modes known in the art, either singly or in combination
with one or more therapeutic agents. A therapeutically effective
amount may vary widely depending on the severity of the disease,
the age and relative health of the subject, the potency of the
compound used and other factors. In general, satisfactory results
are indicated to be obtained systemically at daily dosages of from
about 0.03 to 2.5 mg/kg per body weight. An indicated daily dosage
in the larger mammal, e.g. humans, is in the range from about 0.5
mg to about 100 mg, conveniently administered, e.g. in divided
doses up to four times a day or in retard form. Suitable unit
dosage forms for oral administration comprise from ca. 1 to 50 mg
active ingredient.
[0336] In certain embodiments, a therapeutic amount or dose of the
compounds of the present invention may range from about 0.1 mg/Kg
to about 500 mg/Kg, alternatively from about 1 to about 50 mg/Kg.
In general, treatment regimens according to the present invention
comprise administration to a patient in need of such treatment from
about 10 mg to about 1000 mg of the compound(s) of this invention
per day in single or multiple doses. Therapeutic amounts or doses
will also vary depending on route of administration, as well as the
possibility of co-usage with other agents.
[0337] Upon improvement of a subject's condition, a maintenance
dose of a compound, composition or combination of this invention
may be administered, if necessary. Subsequently, the dosage or
frequency of administration, or both, may be reduced, as a function
of the symptoms, to a level at which the improved condition is
retained when the symptoms have been alleviated to the desired
level, treatment should cease. The subject may, however, require
intermittent treatment on a long-term basis upon any recurrence of
disease symptoms.
[0338] It will be understood, however, that the total daily usage
of the compounds and compositions of the present invention will be
decided by the attending physician within the scope of sound
medical judgment. The specific inhibitory dose for any particular
patient will depend upon a variety of factors including the
disorder being treated and the severity of the disorder; the
activity of the specific compound employed; the specific
composition employed; the age, body weight, general health, sex and
diet of the patient; the time of administration, route of
administration, and rate of excretion of the specific compound
employed; the duration of the treatment; drugs used in combination
or coincidental with the specific compound employed; and like
factors well known in the medical arts.
[0339] The invention also provides for a pharmaceutical
combinations, e.g. a kit, comprising a) a first agent which is a
compound of the invention as disclosed herein, in free form or in
pharmaceutically acceptable salt form, and b) at least one
co-agent. The kit can comprise instructions for its
administration.
[0340] The terms "co-administration" or "combined administration"
or the like as utilized herein are meant to encompass
administration of the selected therapeutic agents to a single
patient, and are intended to include treatment regimens in which
the agents are not necessarily administered by the same route of
administration or at the same time.
[0341] The term "pharmaceutical combination" as used herein means a
product that results from the mixing or combining of more than one
active ingredient and includes both fixed and non-fixed
combinations of the active ingredients. The term "fixed
combination" means that the active ingredients, e.g. a compound of
the invention and a co-agent, are both administered to a patient
simultaneously in the form of a single entity or dosage. The term
"non-fixed combination" means that the active ingredients, e.g. a
compound of the invention and a co-agent, are both administered to
a patient as separate entities either simultaneously, concurrently
or sequentially with no specific time limits, wherein such
administration provides therapeutically effective levels of the two
compounds in the body of the patient. The latter also applies to
cocktail therapy, e.g. the administration of three or more active
ingredients.
[0342] Some examples of materials which can serve as
pharmaceutically acceptable carriers include, but are not limited
to, ion exchangers, alumina, aluminum stearate, lecithin, serum
proteins, such as human serum albumin, buffer substances such as
phosphates, glycine, sorbic acid, or potassium sorbate, partial
glyceride mixtures of saturated vegetable fatty acids, water, salts
or electrolytes, such as protamine sulfate, disodium hydrogen
phosphate, potassium hydrogen phosphate, sodium chloride, zinc
salts, colloidal silica, magnesium trisilicate, polyvinyl
pyrrolidone, polyacrylates, waxes,
polyethylene-polyoxypropylene-block polymers, wool fat, sugars such
as lactose, glucose and sucrose; starches such as corn starch and
potato starch; cellulose and its derivatives such as sodium
carboxymethyl cellulose, ethyl cellulose and cellulose acetate;
powdered tragacanth; malt; gelatin; talc; excipients such as cocoa
butter and suppository waxes, oils such as peanut oil, cottonseed
oil; safflower oil; sesame oil; olive oil; corn oil and soybean
oil; glycols; such a propylene glycol or polyethylene glycol;
esters such as ethyl oleate and ethyl laurate, agar; buffering
agents such as magnesium hydroxide and aluminum hydroxide; alginic
acid; pyrogen-free water, isotonic saline; Ringer's solution; ethyl
alcohol, and phosphate buffer solutions, as well as other non-toxic
compatible lubricants such as sodium lauryl sulfate and magnesium
stearate, as well as coloring agents, releasing agents, coating
agents, sweetening, flavoring and perfuming agents, preservatives
and antioxidants can also be present in the composition, according
to the judgment of the formulator. The compounds of the invention
may be formulated into pharmaceutical compositions for
administration to animals or humans.
EXAMPLES
[0343] The compounds and processes of the present invention will be
better understood in connection with the following examples, which
are intended as an illustration only and not to limit the scope of
the invention. Various changes and modifications to the disclosed
embodiments will be apparent to those skilled in the art and such
changes and modifications including, without limitation, those
relating to the chemical structures, substituents, derivatives,
formulations and/or methods of the invention may be made without
departing from the spirit of the invention and the scope of the
appended claims.
Example 1
N-(3-((5-aminopyrazin-2-yl)methylamino)-4-methylphenyl)-4-((4-ethylpiperaz-
in-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00019##
##STR00020##
[0344] A. tert-butyl 5-methylpyrazin-2-ylcarbamate
##STR00021##
[0346] To a solution of 5-methylpyrazine-2-carboxylic acid (500 mg,
3.62 mmol) in toluene (12 mL) were added DPPA (0.85 mL, 3.98 mmol),
TEA (1.01 mL, 7.24 mmol) and tert-butanol (3.4 mL, 36.2 mmol). The
reaction mixture was refluxed for 6 hours after which, it was
partitioned between ethyl acetate and water. The organic layer was
separated and the aqueous layer was extracted with ethyl acetate.
The combined organic extracts were washed with brine, dried over
MgSO.sub.4, celite filtered and concentrated under reduced
pressure. The crude product was purified by flash chromatography
using (10% Ethyl acetate/Hexane) as a solvent to afford title
compound (530 mg, 70% yield). .sup.1H NMR (600 MHz, CDCl.sub.3)
.delta. 9.15 (s, 1H), 8.08 (s, 1H), 7.61 (s, 1H), 2.50 (s, 3H),
1.55 (s, 9H). MS m/z: 210 [M+1].
B. tert-butyl 5-(bromomethyl)pyrazin-2-ylcarbamate
##STR00022##
[0348] To a solution tert-butyl 5-methylpyrazin-2-ylcarbamate (500
mg, 2.39 mmol) in CCl.sub.4 (8.0 mL) were added NBS (446 mg, 2.51
mmol) and AIBN (117 mg, 0.72 mmol). The reaction mixture was
stirred for 4 hours at 80.degree. C. after which, it was
partitioned between CH.sub.2Cl.sub.2 and water. The organic layer
was separated and the aqueous layer was extracted with
CH.sub.2Cl.sub.2. The combined organic extracts were washed with
brine, dried over MgSO.sub.4, celite filtered and concentrated
under reduced pressure. The crude product was purified by flash
chromatography using (10% Ethyl acetate/Hexane) as a solvent to
afford title compound (520 mg, 75% yield). .sup.1H NMR (600 MHz,
CDCl.sub.3) .delta. 9.29 (s, 1H), 8.95 (s, 1H), 8.37 (s, 1H), 4.38
(s, 2H), 1.57 (s, 9H). MS m/z: 288 [M+1].
C. tert-butyl
5-((5-(4-(4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzamido)-2-m-
ethylphenylamino)methyl)pyrazin-2-ylcarbamate
##STR00023##
[0350] To a solution
N-(3-amino-4-methylphenyl)-4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoro-
methyl)benzamide (70 mg, 0.17 mmol) in DMF (0.5 mL) were added
K.sub.2CO.sub.3 (69 mg, 0.50 mmol) and tert-butyl
5-(bromomethyl)pyrazin-2-ylcarbamate (48 mg, 0.17 mmol). The
reaction mixture was stirred for 8 hours at room temperature after
which, it was partitioned between ethyl acetate and water. The
organic layer was separated and the aqueous layer was extracted
with ethyl acetate. The combined organic extracts were washed with
brine, dried over MgSO.sub.4, filtered and concentrated. The crude
product was purified by flash chromatography using (5%
MeOH/CH.sub.2Cl.sub.2) as a solvent to afford title compound (50
mg, 47% yield). MS m/z: 628 [M+1].
D.
N-(3-((5-aminopyrazin-2-yl)methylamino)-4-methylphenyl)-4-((4-ethylpipe-
razin-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00024##
[0352] To a solution tert-butyl
5-((5-(4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzamido)-2--
methylphenylamino)methyl)pyrazin-2-ylcarbamate (30 mg, 0.05 mmol)
in CH.sub.2Cl.sub.2 (0.3 ml) was added TFA (18 .mu.L, 0.24 mmol).
The reaction mixture was stirred for 4 hours at room temperature
after which, it was concentrated under reduced pressure. The crude
product was purified by Prep HPLC and acetonitrile was removed
under reduced pressure. The remained water was freeze-dried to
afford TFA salt formed title compound (22 mg, 74% yield). .sup.1H
NMR (600 MHz, DMSO-d.sub.6) .delta. 10.22 (s, 1H), 8.17 (d, J=2.4
Hz, 1H), 8.01 (d, J=7.8 Hz, 1H), 7.85 (s, 1H), 7.82 (d, J=1.2 Hz,
1H), 7.65 (s, J=9.0 Hz, 1H), 7.14 (dd, J=1.8, 7.8 Hz, 2H), 7.03 (d,
J=1.8 Hz, 1H), 6.23 (s, 2H), 5.64 (t, J=6.0 Hz, 1H), 4.32 (d, J=5.4
Hz, 2H), 3.6 (brs, 2H), 3.40-3.25 (brs, 10H), 2.18 (s, 3H), 1.15
(t, J=7.2 Hz, 3H). MS m/z: 528 [M+1].
[0353] Additional compounds made by the synthetic route of Example
1 are found in FIGS. 1A to 1E.
Example 2
3-((5-aminopyrazin-2-yl)methylamino)-N,4-dimethylbenzamide
##STR00025##
##STR00026##
[0354] A. Methyl
3-((5-(tert-butoxycarbonylamino)pyrazin-2-yl)methylamino)-4-methylbenzoat-
e
##STR00027##
[0356] Methyl
3-((5-(tert-butoxycarbonylamino)pyrazin-2-yl)methylamino)-4-methylbenzoat-
e (650 mg, 57% yield) was prepared as described for Example 1-C
starting from methyl 3-amino-4-methylbenzoate (500 mg, 3.03 mmol).
.sup.1H NMR (600 MHz, CDCl.sub.3) .delta. 9.26 (s, 1H), 8.25 (s,
1H), 7.52 (s, 1H), 7.38 (d, J=7.2 Hz, 1H), 7.29 (s, 1H), 7.14 (d,
J=7.2 Hz, 1H), 4.52 (s, 2H), 3.88 (s, 3H), 2.26 (s, 3H), 1.55 (s,
9H). MS m/z: 373 [M+1].
B.
3-((5-(tert-butoxycarbonylamino)pyrazin-2-yl)methylamino)-4-methylbenzo-
ic acid
##STR00028##
[0358] Methyl
3-((5-(tert-butoxycarbonylamino)pyrazin-2-yl)methylamino)-4-methylbenzoat-
e (600 mg, 1.61 mmol) in THF (2 mL) and MeOH (2 mL) was added
LiOH.H.sub.2O (338 mg, 8.06 mmol) in water (2 mL). The reaction
mixture was stirred for overnight at room temperature. The organic
solvent was removed under reduced pressure and water (4 mL) was
added to the reaction mixture. To a reaction mixture was added 1N
HCl solution to produce solid. The solid product was filtered and
dried with nitrogen gas flow. The title product (460 mg, 79% yield)
was used next reaction without further purification. MS m/z: 359
[M+1].
C. tert-butyl
5-((2-methyl-5-(methylcarbamoyl)phenylamino)methyl)pyrazin-2-ylcarbamate
##STR00029##
[0360] To a solution of
3-((5-(tert-butoxycarbonylamino)pyrazin-2-yl)methylamino)-4-methylbenzoic
acid (30 mg, 0.08 mmol) in DMF (1 mL) were added HATU (95 mg, 0.25
mmol), DIEA (74 L, 0.42 mmol) and methylamine hydrochloride (9 mg,
0.13 mmol). The reaction mixture was stirred for overnight at room
temperature after which, it was partitioned between ethyl acetate
and water. The organic layer was separated and the aqueous layer
was extracted with ethyl acetate. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, celite filtered and
concentrated under reduced pressure. The crude product (29 mg, 93%
yield) was used without further purification. MS m/z: 372
[M+1].
D. 3-((5-aminopyrazin-2-yl)methylamino)-N,4-dimethylbenzamide
##STR00030##
[0362] 3-((5-aminopyrazin-2-yl)methylamino)-N,4-dimethylbenzamide
(21 mg, 70% yield) was prepared as described for Example 1-D
starting from tert-butyl
5-((2-methyl-5-(methylcarbamoyl)phenylamino)methyl)
pyrazin-2-ylcarbamate (29 mg, 0.08 mmol). .sup.1H NMR (600 MHz,
DMSO-d.sub.6) .delta. 8.10 (s, 1H), 7.81 (s, 2H), 7.01-6.90 (m,
3H), 6.21 (s, 2H), 5.40 (s, 1H), 4.29 (s, 2H), 2.71 (s, 3H), 2.14
(s, 3H). MS m/z: 272 [M+1].
[0363] Additional compounds made by the synthetic route of Example
2 are found in FIGS. 2A to 2B.
Example 3
N-(3-((5-acetamidopyrazin-2-yl)methylamino)-4-methylphenyl)-4-((4-ethylpip-
erazin-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00031##
##STR00032##
[0364] A. 5-methylpyrazin-2-amine
##STR00033##
[0366] To a solution tert-butyl 5-methylpyrazin-2-ylcarbamate (1.5
g, 7.17 mmol) in CH.sub.2Cl.sub.2 (20 ml) was added TFA (2.6 mL,
35.86 mmol). The reaction mixture was stirred for 4 hours at room
temperature after which, it was concentrated under reduced
pressure. The reaction mixture was diluted with CH.sub.2Cl.sub.2
and neutralized with sat.NaHCO.sub.3 solution. The organic layer
was separated and the aqueous layer was extracted with
CH.sub.2Cl.sub.2. The combined organic extracts were washed with
brine, dried over MgSO.sub.4, celite filtered and concentrated
under reduced pressure. The crude product was purified by flash
chromatography using (30% to 50% Ethyl acetate/Hexane) as a solvent
to afford title compound (580 mg, 74% yield). MS m/z: 110
[M+1].
B. N-(5-methylpyrazin-2-yl)acetamide
##STR00034##
[0368] To a solution of 5-methylpyrazin-2-amine (300 mg, 2.75 mmol)
in dried THF (9 mL) were added acetyl chloride (0.21 mL, 2.89 mmol)
and TEA (0.75 mL, 5.50 mmol). The reaction mixture was stirred for
3 hours after which, it was partitioned between ethyl acetate and
water. The organic layer was separated and the aqueous layer was
extracted with ethyl acetate. The combined organic extracts were
washed with brine, dried over MgSO.sub.4, celite filtered and
concentrated under reduced pressure. The crude product was purified
by flash chromatography using (10% to 30% Ethyl acetate/Hexane) as
a solvent to afford title compound (360 mg, 86% yield). MS m/z: 152
[M+1].
C. N-(5-(bromomethyl)pyrazin-2-yl)acetamide
##STR00035##
[0370] N-(5-(bromomethyl)pyrazin-2-yl)acetamide (420 mg, 51% yield)
was prepared as described for Example 1-B starting from
N-(5-methylpyrazin-2-yl)acetamide (330 mg, 2.18 mmol). MS m/z: 231
[M+1].
D.
N-(3-((5-acetamidopyrazin-2-yl)methylamino)-4-methylphenyl)-4-((4-ethyl-
piperazin-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00036##
[0372] To a solution
N-(3-amino-4-methylphenyl)-4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoro-
methyl)benzamide (50 mg, 0.12 mmol) in acetonitrile (0.5 mL) were
added K.sub.2CO.sub.3 (49 mg, 0.36 mmol) and
N-(5-(bromomethyl)pyrazin-2-yl)acetamide (44 mg, 0.12 mmol). The
reaction mixture was filtered with celite and concentrated under
reduced pressure. The crude product was purified by Prep HPLC and
acetonitrile was removed under reduced pressure. The remained water
was freeze-dried to afford TFA salt formed title compound (40 mg,
49% yield). .sup.1H NMR (600 MHz, CD.sub.3OD) .delta. 9.49 (d,
J=1.2 Hz, 1H), 8.53 (d, J=1.2 Hz, 1H), 8.12 (d, J=1.8 Hz, 1H), 7.94
(dd, J=1.8, 8.4 Hz, 1H), 7.74 (d, J=8.4 Hz, 1H), 7.24 (d, J=1.8 Hz,
1H), 7.17 (dd, J=1.8, 7.8 Hz, 1H), 7.12 (d, J=7.8 Hz, 1H), 4.72 (s,
2H), 3.84 (s, 2H), 3.68-3.64 (m, 2H), 3.55-3.46 (m, 4H), 3.02-2.99
(m, 2H), 2.90-2.87 (m, 2H), 2.21 (s, 6H), 1.49 (t, 7.2 Hz, 3H). MS
m/z: 570 [M+1].
[0373] Additional compounds made by the synthetic route of Example
3 are found in FIGS. 3A to 3E.
Example 4
(E)-N-(3-(2-(5-aminopyrazin-2-yl)vinyl)-4-methylphenyl)-4-((4-methylpipera-
zin-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00037##
##STR00038## ##STR00039##
[0374] A. Ethyl
2-methyl-5-(4-((4-methylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzami-
do)benzoate
##STR00040##
[0376] To a solution of ethyl 5-amino-2-methylbenzoate (500 mg,
2.79 mmol) and TEA (0.78 mL, 5.58 mmol) in dried THF (9 mL) was
added 4-(chloromethyl)-3-(trifluoromethyl)benzoyl chloride (714 mg,
2.79 mmol). The reaction mixture was stirred for 5 hours at room
temperature after which, it was concentrated under reduced
pressure. To a solution of the reaction mixture in acetonitrile (10
mL) were added methyl piperazine (558 mg, 5.58 mmol) and
K.sub.2CO.sub.3 (1.1 g, 8.38 mmol). The reaction mixture was
stirred for 8 hours at room temperature. The reaction mixture was
partitioned between ethyl acetate and water. The organic layer was
separated and the aqueous layer was extracted with ethyl acetate.
The combined organic extracts were washed with brine, dried over
MgSO.sub.4, celite filtered and concentrated under reduced
pressure. The crude product was purified by flash chromatography
using (3% to 7% Methanol/CH2Cl2) as a solvent to afford title
compound (820 mg, 63% yield). MS m/z: 464 [M+1].
B.
N-(3-(hydroxymethyl)-4-methylphenyl)-4-((4-methylpiperazin-1-yl)methyl)-
-3-(trifluoromethyl)benzamide
##STR00041##
[0378] To a solution Ethyl
2-methyl-5-(4-((4-methylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzami-
do)benzoate (300 mg, 0.65 mmol) in dried THF (2.2 mL) was added
Lithium aluminium hydride 2.0M THF solution (0.48 mL, 0.98 mmol) at
0.degree. C. The reaction mixture was stirred for 2 hours at room
temperature. When the reaction was completed, the reaction mixture
was diluted with ethyl ether (2.0 mL) and added water very slowly
to decompose the excess of the reagent. To a reaction mixture was
added MgSO.sub.4, celite filtered and concentrated under reduced
pressure. The title compound (230 mg, 84% yield) was used next step
without further purification. MS m/z: 422 [M+1].
C.
N-(3-formyl-4-methylphenyl)-4-((4-methylpiperazin-1-yl)methyl)-3-(trifl-
uoromethyl)benzamide
##STR00042##
[0380] To a stirred solution of
N-(3-(hydroxymethyl)-4-methylphenyl)-4-((4-methylpiperazin-1-yl)methyl)-3-
-(trifluoromethyl)benzamide (200 mg, 0.47 mmol) in CH.sub.2Cl.sub.2
(2 mL) was added freshly dried 4 .ANG. MS and NMO (83 mg, 0.71
mmol). The mixture was stirred for 10 min before TPAP (17 mg, 0.05
mmol) was added, and the resulting reaction mixture was stirred 12
hours at room temperature. The reaction mixture was filtered
through celite, concentrated under reduced pressure, and purified
by flash column chromatography (3% to 7% MeOH/CH.sub.2Cl.sub.2) to
afford title product (175 g, 88% yield). MS m/z: 420 [M+1].
D. tert-butyl
5-((diethoxyphosphoryl)methyl)pyrazin-2-ylcarbamate
##STR00043##
[0382] tert-butyl 5-(bromomethyl)pyrazin-2-ylcarbamate (2.5 g, 8.71
mmol) and triethylphosphite (1.8 ml, 10.45 mmol) were placed in a
25 mL round bottom flask. A distillation apparatus was attached to
collect the poisonous ethyl bromide formed during the reaction. The
reaction mixture was heated to 140.degree. C. for 30 minutes and
then cooled to room temperature. The reaction mixture was purified
by flash column chromatography (10% to 30% Ethyl acetate/Hexane) to
afford title product (1.8 g, 60% yield). .sup.1H NMR (600 MHz,
CDCl.sub.3) .delta. 9.19 (s, 1H), 8.22 (t, J=1.8 Hz, 1H), 7.37 (s,
1H), 4.12-4.07 (m, 4H), 3.38 (s, 1H), 3.34 (s, 1H), 1.54 (s, 9H),
1.29 (t, J=7.2 Hz, 6H). MS m/z: 346 [M+1].
E. (E)-tert-butyl
5-(2-methyl-5-(4-((4-methylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benz-
amido)styryl)pyrazin-2-ylcarbamate
##STR00044##
[0384] tert-butyl
5-((diethoxyphosphoryl)methyl)pyrazin-2-ylcarbamate (35 mg, 0.10
mmol) in dried DMF (0.5 mL) was added NaH (5 mg, 0.12 mmol) at
0.degree. C. After 20 minutes, a solution
N-(3-formyl-4-methylphenyl)-4-((4-methylpiperazin-1-yl)methyl)-3-(trifluo-
romethyl)benzamide (44 mg, 0.10 mmol) in dried DMF (0.5 mL) was
added slowly into the reaction mixture. The reaction mixture was
stirred overnight at room temperature and quenched by adding water.
The reaction mixture was partitioned between ethyl acetate and
water. The organic layer was separated and the aqueous layer was
extracted with ethyl acetate. The combined organic extracts were
washed with brine, dried over MgSO.sub.4, celite filtered and
concentrated under reduced pressure. The crude product was purified
by flash chromatography using (3% to 7% MeOH/CH.sub.2Cl.sub.2) as a
solvent to afford title compound (40 mg, 64% yield). MS m/z: 611
[M+1].
F.
(E)-N-(3-(2-(5-aminopyrazin-2-yl)vinyl)-4-methylphenyl)-4-((4-methylpip-
erazin-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00045##
[0386]
(E)-N-(3-(2-(5-aminopyrazin-2-yl)vinyl)-4-methylphenyl)-4-((4-methy-
lpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzamide (25 mg, 81%
yield) was prepared as described for Example 1-D starting from
(E)-tert-butyl
5-(2-methyl-5-(4-((4-methylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benz-
amido)styryl)pyrazin-2-ylcarbamate (30 mg, 0.05 mmol). MS m/z: 511
[M+1].
[0387] Additional compounds made by the synthetic route of Example
4 are found in FIGS. 4A to 4C.
Example 5
(E)-3-(2-(5-(4-(piperazin-1-ylsulfonyl)phenylamino)pyrazin-2-yl)vinyl)phen-
ol
##STR00046##
##STR00047##
[0388] A. 5-vinylpyrazin-2-amine
##STR00048##
[0390] To a mixture of 5-bromopyrazin-2-amine (1.0 g, 5.78 mmol)
and vinyltri-n-butyltin (2.01 g, 6.36 mmol) in DMF (19 mL) were
added LiCl (269 mg, 6.36 mmol) and DIEA (1.1 mL, 6.36 mmol). After
degassing for 20 minutes, Pd(PPh.sub.3).sub.4 (400 mg, 0.35 mmol)
was added to the reaction mixture. And then the mixture was
refluxed for 4 hours under Ar atmosphere. The reaction mixture was
cooled to room temperature and stirred with a 10% aqueous solution
of potassium fluoride for 1 hour. The resulting solution was
filtered through a pad of celite and washed with ethyl acetated.
The aqueous layer was separated and extracted with ethyl acetate.
The combined organic layer was dried over MgSO.sub.4 and
concentrated under reduced pressure. The crude product was purified
by flash column chromatography (30% to 50% Ethyl acetate/Hexane) to
afford title product (540 mg, 77% yield). MS m/z: 122 [M+1].
B. tert-butyl
4-(4-(5-vinylpyrazin-2-ylamino)phenylsulfonyl)piperazine-1-carboxylate
##STR00049##
[0392] To a solution of 5-vinylpyrazin-2-amine (150 mg, 1.24 mmol)
in 2-buOH (4 mL) were added K.sub.2CO.sub.3 (512 mg, 3.71 mmol),
and tert-butyl 4-(4-aminophenylsulfonyl)piperazine-1-carboxylate
(421 mg, 1.24 mmol). The reaction mixture was degassed for 10
minutes. To a mixture were added Pd.sub.2(dba).sub.3 (76 mg, 0.07
mmol) and X-phos (53 mg, 0.11 mmol). The reaction mixture was
heated to 100.degree. C. for 6 hours after which, it was filtered
with a pad of celite and partitioned between ethyl acetate and
water. The organic layer was separated and the aqueous layer was
extracted with ethyl acetate. The combined organic extracts were
washed with brine, dried over MgSO.sub.4, celite filtered and
concentrated under reduced pressure. The crude product was purified
by flash chromatography using (20% to 30% Ethyl acetate/Hexane) as
a solvent to afford title compound (360 mg, 65% yield). MS m/z: 446
[M+1].
C. (E)-tert-butyl
4-(4-(5-(3-hydroxystyryl)pyrazin-2-ylamino)phenylsulfonyl)piperazine-1-ca-
rboxylate
##STR00050##
[0394] A mixture of tert-butyl
4-(4-(5-vinylpyrazin-2-ylamino)phenylsulfonyl)piperazine-1-carboxylate
(40 mg, 0.09 mmol), 3-iodophenol (19 mg, 0.09 mmol), Pd(OAc).sub.2
(1.2 mg, 0.005 mmol), tri-p-tolylphosphine (2.5 mg, 0.008 mmol),
and DIEA (31 .mu.L, 0.18 mmol) in DMF (3 ml) was heated at
120.degree. C. for 18 h after which, it was filtered with a pad of
celite and partitioned between ethyl acetate and water. The organic
layer was separated and the aqueous layer was extracted with ethyl
acetate. The combined organic extracts were washed with brine,
dried over MgSO.sub.4, celite filtered and concentrated under
reduced pressure. The crude product was purified by flash
chromatography using (20% to 40% Ethyl acetate/Hexane) as a solvent
to afford title compound (38 mg, 78% yield). MS m/z: 538 [M+1].
D.
(E)-3-(2-(5-(4-(piperazin-1-ylsulfonyl)phenylamino)pyrazin-2-yl)vinyl)p-
henol
##STR00051##
[0396]
(E)-3-(2-(5-(4-(piperazin-1-ylsulfonyl)phenylamino)pyrazin-2-yl)vin-
yl)phenol (26 mg, 84% yield) was prepared as described for Example
1-D starting from (E)-tert-butyl
4-(4-(5-(3-hydroxystyryl)pyrazin-2-ylamino)phenylsulfonyl)piperazine-1-ca-
rboxylate (30 mg, 0.06 mmol). MS m/z: 438 [M+1].
[0397] Additional compounds made by the synthetic route of Example
5 are found in FIGS. 5A to 5G.
Example 6
4-chloro-N-(5-(4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzam-
ido)-2-methylphenyl)-1H-pyrrolo[2,3-b]pyridine-5-carboxamide
##STR00052##
##STR00053##
[0398] A.
4-chloro-1-tosyl-1H-pyrrolo[2,3-b]pyridine-5-carbaldehyde
##STR00054##
[0400] To a solution
4-chloro-1H-pyrrolo[2,3-b]pyridine-5-carbaldehyde (500 mg, 2.78
mmol) in MC (9 mL) were added TsCl (556 mg, 2.91 mmol) and DMAP
(509 mg, 4.17 mmol). The reaction mixture stirred for 8 hours at
room temperature. The produced precipitated was filtered, washed
with water and dried with nitrogen gas flow. The title product (810
mg, 87% yield) was used without further purification. MS m/z: 335
[M+1].
B. 4-chloro-1-tosyl-1H-pyrrolo[2,3-b]pyridine-5-carboxylic acid
##STR00055##
[0402] To a stirred solution of NaH.sub.2PO.sub.4.2H.sub.2O (513
mg, 3.3 mmol) in water (3 ml), was added a solution of
4-chloro-1-tosyl-1H-pyrrolo[2,3-b]pyridine-5-carbaldehyde (500 mg,
1.50 mmol) in acetone (6 ml) at 0.degree. C. A solution of
NaClO.sub.2 (541 mg, 5.98 mmol) in water (3 ml) was added to the
reaction mixture at 0.degree. C. and the reaction mixture was
warmed to room temperature spontaneously. After 2 hours, 1N HCl
solution was added to reach pH=5. The produced solid was filtered
and dried with nitrogen gas flow. The title product (440 mg, 84%
yield) was used next reaction without further purification. MS m/z:
351 [M+1].
C.
4-chloro-N-(5-(4((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benz-
amido)-2-methylphenyl)-1-tosyl-1H-pyrrolo[2,3-b]pyridine-5-carboxamide
##STR00056##
[0404] To a solution of
4-chloro-1-tosyl-1H-pyrrolo[2,3-b]pyridine-5-carboxylic acid (50
mg, 0.14 mmol) in DMF (1 mL) were added HATU (162 mg, 0.43 mmol),
DIEA (0.12 mL, 0.71 mmol) and
N-(3-amino-4-methylphenyl)-4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoro-
methyl)benzamide (60 mg, 0.14 mmol). The reaction mixture was
stirred for overnight at room temperature after which, it was
poured to water and the produced solid was filtered. The crude
solid was dried with nitrogen gas flow. The title compound (85 mg,
0.11 mmol) was used next reaction without further purification. MS
m/z: 753 [M+1].
D.
4-chloro-N-(5-(4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)ben-
zamido)-2-methylphenyl)-1H-pyrrolo[2,3-b]pyridine-5-carboxamide
##STR00057##
[0406] To a solution of
4-chloro-N-(5-(4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benza-
mido)-2-methylphenyl)-1-tosyl-1H-pyrrolo[2,3-b]pyridine-5-carboxamide
(40 mg, 0.053 mmol) in dioxane (1 mL) was added NaOt-Bu (25 mg,
0.27 mmol). The reaction mixture was stirred for 6 hours at
50.degree. C. after which, it was filtered with a pad of celite and
partitioned between ethyl acetate and water. The organic layer was
separated and the aqueous layer was extracted with ethyl acetate.
The combined organic extracts were washed with brine, dried over
MgSO.sub.4, celite filtered and concentrated under reduced
pressure. The crude product was purified by Prep HPLC and
acetonitrile was removed under reduced pressure. The remained water
was freeze-dried to afford TFA salt formed title compound (29 mg,
76% yield). .sup.1H NMR (600 MHz, DMSO-d.sub.6) .delta. 11.89 (s,
1H), 10.21 (s, 1H), 9.33 (brs, 1H), 8.13 (s, 1H), 8.10 (s, 1H),
7.96 (d, J=7.8 Hz, 1H), 7.60 (d, J=8.4 Hz, 1H), 7.50 (t, J=3.0 Hz,
1H), 7.12 (d, J=7.2 Hz, 1H), 7.10 (d, J=7.8 Hz, 1H), 6.98 (s, 1H),
6.43 (s, 1H), 4.55 (s, 2H), 3.65-3.55 (m, 2H), 3.10-3.02 (m, 2H),
2.95-2.80 (m, 4H), 2.35-2.30 (m, 2H), 2.17 (s, 3H), 1.14 (t, J=7.2
Hz, 3H). MS m/z: 599 [M+1].
[0407] Additional compounds made by the synthetic route of Example
6 are found in FIGS. 6A to 6B.
Example 7
3-((4-chloro-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-methyl-N-(3-(tri-
fluoromethyl)phenyl)benzamide
##STR00058##
##STR00059##
[0409] To a solution of
4-chloro-1H-pyrrolo[2,3-b]pyridine-5-carbaldehyde (30 mg, 0.17
mmol) in MeOH (1 mL) were added NaBH.sub.3CN (52 mg, 0.83 mmol) and
AcOH (29 .mu.L, 0.50 mmol). The reaction mixture was stirred
overnight at room temperature. The organic solvent was removed
under reduced pressure. The reaction mixture was neutralized with
sat. NaHCO3 and the aqueous layer was extracted with ethyl acetate.
The organic extracts were washed with brine, dried over MgSO.sub.4,
celite filtered and concentrated under reduced pressure. The crude
product was purified by Prep HPLC and acetonitrile was removed
under reduced pressure. The remained water was freeze-dried to
afford TFA salt formed title compound (42 mg, 44% yield). .sup.1H
NMR (600 MHz, DMSO-d.sub.6) .delta. 11.91 (s, 1H), 10.25 (s, 1H),
8.18 (d, J=12.0 Hz, 2H), 7.97 (d, J=7.8 Hz, 1H), 7.52-7.50 (m, 2H),
7.36 (d, J=6.6 Hz, 1H), 7.18 (d, J=7.8 Hz, 1H), 7.13 (d, J=7.8 Hz,
1H), 7.04 (s, 1H), 6.47 (s, 1H), 4.60 (d, J=4.8 Hz, 2H), 3.15 (d,
J=4.2 Hz, 1H), 2.22 (s, 3H). MS m/z: 459 [M+1].
[0410] Additional compounds made by the synthetic route of Example
7 are found in FIGS. 7A to 7D.
Example 8
N-(3-((1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-methylphenyl)-4-((4-me-
thylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzamide
##STR00060##
##STR00061##
[0412] To a solution
N-(3-((4-chloro-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-methylphenyl-
)-4-((4-methylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzamide
(10 mg, 0.017 mmol) in EtOH (1.0 mL) was added 10% Pd/C (2 mg).
After two vacuum/H.sub.2 cycles to replace air inside the reaction
flask with hydrogen balloon, the reaction mixture was stirred at
room temperature for 36 hours. The reaction mixture was filtered
with a pad of celite and concentrated under reduced pressure. The
crude product was purified by Prep HPLC and acetonitrile was
removed under reduced pressure. The remained water was freeze-dried
to afford TFA salt formed title compound (4 mg, 35% yield). MS m/z:
537 [M+1].
[0413] Additional compounds made by the synthetic route of Example
8 are found in FIG. 8.
Example 9
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-methoxy-1H-pyrrolo[2,3-b]pyridi-
n-5-yl)methylamino)-4-methylphenyl)-3-(methylphenyl)-3-(trifluoromethyl)be-
nzamide
##STR00062##
##STR00063##
[0414] A.
4-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]p-
yridine-5-carbaldehyde
##STR00064##
[0416] To a solution of
4-chloro-1H-pyrrolo[2,3-b]pyridine-5-carbaldehyde (500 mg, 2.78
mmol) in THF (9 mL) was added NaH (136 mg, 3.42 mmol) at 0.degree.
C. After 10 minutes, SEMCl (0.59 mL. 3.33 mmol) was added slowly to
the reaction mixture at 0.degree. C. The reaction mixture was
warmed to room temperature and stirred for 2 hours after which, it
was partitioned between ethyl acetate and water. The organic layer
was separated and the aqueous layer was extracted with ethyl
acetate. The combined organic extracts were washed with brine,
dried over MgSO.sub.4, celite filtered and concentrated under
reduced pressure. The crude product was purified by flash
chromatography using (5% to 20% Ethyl acetate/Hexane) as a solvent
to afford title compound (810 mg, 94% yield). .sup.1H NMR (600 MHz,
CDCl.sub.3) .delta. 10.62 (s, 1H), 8.90 (s, 1H), 7.52 (d, J=3.6 Hz,
1H), 6.84 (d, J=4.2 Hz, 1H), 5.76 (s, 2H), 3.60 (t, J=8.4 Hz, 2H),
0.97 (t, J=8.4 Hz, 2H), 0 (s, 9H).
B.
4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-
e-5-carbaldehyde
##STR00065##
[0418] Na (370 mg, 16.12 mmol) was dissolved in MeOH (5 mL) and
4-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridine-5-
-carbaldehyde (500 mg, 1.61 mmol) was added to the sodium methoxide
solution. The reaction mixture was stirred for 8 hours for
60.degree. C. The reaction mixture was quenched with water and the
organic solvent was removed under reduced pressure. The resulting
mixture was partitioned between ethyl acetate and water. The
organic layer was separated and the aqueous layer was extracted
with ethyl acetate. The combined organic extracts were washed with
brine, dried over MgSO.sub.4, celite filtered and concentrated
under reduced pressure. The crude product was purified by flash
chromatography using (5% to 20% Ethyl acetate/Hexane) as a solvent
to afford title compound (380 mg, 77% yield). .sup.1H NMR (600 MHz,
CDCl.sub.3) .delta. 10.51 (s, 1H), 8.74 (s, 1H), 7.36 (d, J=3.6 Hz,
1H), 6.90 (d, J=4.2 Hz, 1H), 5.72 (s, 2H), 4.48 (s, 3H), 3.60 (t,
J=7.8 Hz, 2H), 0.97 (t, J=8.4 Hz, 2H), 0 (s, 9H). MS m/z: 307
[M+1].
C.
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-methoxy-1-((2-(trimethylsily-
l)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-methylphenyl-
)-3-(trifluoromethyl)benzamide
##STR00066##
[0420] To a solution of
4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridine--
5-carbaldehyde (30 mg, 0.10 mmol) in dioxane (1 mL) were added
NaBH(OAc).sub.3 (103 mg, 0.83 mmol) and AcOH (6 .mu.L, 0.10 mmol).
The reaction mixture was stirred overnight at room temperature. The
reaction mixture was neutralized with sat. NaHCO.sub.3 and the
aqueous layer was extracted with ethyl acetate. The organic
extracts were washed with brine, dried over MgSO.sub.4, celite
filtered and concentrated under reduced pressure. The crude product
was purified by flash chromatography using (1% to 7%
MeOH/CH.sub.2Cl.sub.2) as a solvent to afford title compound (43
mg, 61% yield). MS m/z: 711 [M+1].
D.
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-methoxy-1H-pyrrolo[2,3-b]pyr-
idin-5-yl)methylamino)-4-methylphenyl)-3-(trifluoromethyl)benzamide
##STR00067##
[0422] To a solution of
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-methoxy-1-((2-(trimethylsilyl)-
ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-methylphenyl)--
3-(trifluoromethyl)benzamide (40 mg, 0.042 mmol) in
CH.sub.2Cl.sub.2 (1 mL) was added TFA (16 L). The reaction mixture
was stirred for 1 hour and the organic solvent was concentrated
under reduced pressure. To a solution of the resulting mixture in
THF (0.3 mL) and MeOH (0.3 mL) was added LiOH.H.sub.2O (17 mg, 0.42
mmol) in water (0.3 mL). The reaction mixture was stirred for 2
hours at room temperature. The organic solvent was removed under
reduced pressure and the aqueous layer was extracted with ethyl
acetate. The organic extracts were washed with brine, dried over
MgSO.sub.4, celite filtered and concentrated under reduced
pressure. The crude product was purified by Prep HPLC and
acetonitrile was removed under reduced pressure. The remained water
was freeze-dried to afford TFA salt formed title compound (21 mg,
71% yield). MS m/z: 581 [M+1].
[0423] Additional compounds made by the synthetic route of Example
9 are found in FIGS. 9A to 9C.
Example 10
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-(isopropylthio)-1H-pyrrolo[2,3--
b]pyridin-5-yl)methylamino)-4-methylphenyl)-3-(trifluoromethyl)benzamide
##STR00068##
##STR00069##
[0424] A.
4-(isopropylthio)-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrol-
o[2,3-b]pyridine-5-carbaldehyde
##STR00070##
[0426] To a solution of
4-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridine-5-
-carbaldehyde (500 mg, 1.61 mmol) in dioxane (5 mL) were added
K.sub.2CO.sub.3 (668 mg, 4.83 mmol) and 2-propanethiol (0.3 mL,
3.22 mmol). The reaction mixture was stirred for overnight for
70.degree. C. The reaction mixture was partitioned between ethyl
acetate and water. The organic layer was separated and the aqueous
layer was extracted with ethyl acetate. The combined organic
extracts were washed with brine, dried over MgSO.sub.4, celite
filtered and concentrated under reduced pressure. The crude product
was purified by flash chromatography using (5% to 20% Ethyl
acetate/Hexane) as a solvent to afford title compound (320 mg, 56%
yield). MS m/z: [M+1].
B.
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-(isopropylthio)-1-((2-(trime-
thylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-meth-
ylphenyl)-3-(trifluoromethyl)benzamide
##STR00071##
[0428]
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-(isopropylthio)-1-((2-(t-
rimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4--
methylphenyl)-3-(trifluoromethyl)benzamide (46 mg, 71% yield) was
prepared as described for Example 9-C starting from
4-(isopropylthio)-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]p-
yridine-5-carbaldehyde (30 mg, 0.085 mmol). MS m/z: 755 [M+1].
C.
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-(isopropylthio)-1H-pyrrolo[2-
,3-b]pyridin-5-yl)methylamino)-4-methylphenyl)-3-(trifluoromethyl)benzamid-
e
##STR00072##
[0430]
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-(isopropylthio)-1H-pyrro-
lo[2,3-b]pyridin-5-yl)methylamino)-4-methylphenyl)-3-(trifluoromethyl)benz-
amide (18 mg, 52% yield) was prepared as described for Example 9-D
starting from
4-((4-ethylpiperazin-1-yl)methyl)-N-(3-((4-(isopropylthio)-1-((2-(trimeth-
ylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-5-yl)methylamino)-4-methyl-
phenyl)-3-(trifluoromethyl)benzamide (35 mg, 0.046 mmol). MS m/z:
625 [M+1].
[0431] Additional compounds made by the synthetic route of Example
10 are found in FIGS. 10A to 10B.
Example 11
(E)-3-(2-(4-chloro-1H-pyrrolo[2,3-b]pyridin-5-yl)vinyl)-N-(4-((4-ethylpipe-
razin-1-yl)methyl)-3-(trifluoromethyl)phenyl)-4-methylbenzamide
##STR00073##
##STR00074##
[0432] A.
4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-5-vinyl-1H-pyrrol-
o[2,3-b]pyridine
##STR00075##
[0434] To a solution methyltriphenylphosphonium iodide (782 mg,
1.93 mmol) in dried THF (5 mL) was added 2.5 M n-BuLi in Hexane
(0.74 mL, 1.85 mmol) at -78.degree. C. After 10 minutes,
4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridine--
5-carbaldehyde (493 mg, 1.61 mmol) was added to the reaction
mixture. The reaction mixture was warmed to room temperature
spontaneously. After 2 hours, the reaction mixture was quenched
with water and was partitioned between ethyl acetate and water. The
organic layer was separated and the aqueous layer was extracted
with ethyl acetate. The combined organic extracts were washed with
brine, dried over MgSO.sub.4, celite filtered and concentrated
under reduced pressure. The crude product was purified by flash
chromatography using (5% to 15% Ethyl acetate/Hexane) as a solvent
to afford title compound (371 mg, 76% yield). .sup.1H NMR (600 MHz,
CDCl.sub.3) .delta. 8.40 (s, 1H), 7.27 (d, J=3.6 Hz, 1H), 7.07 (dd,
J=11.4, 18 Hz, 1H), 6.78 (d, J=3.6 Hz, 1H), 5.78 (d, J=18 Hz, 1H),
5.70 (s, 2H), 5.30 (d, J=11.4 Hz, 1H), 4.38 (s, 3H), 3.60 (t, J=8.4
Hz, 2H), 0.97 (t, J=8.4 Hz, 2H), 0 (s, 9H). MS m/z: 305 [M+1].
B. (E)-ethyl
3-(2-(4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyr-
idin-5-yl)vinyl)-4-methylbenzoate
##STR00076##
[0436] (E)-ethyl
3-(2-(4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyr-
idin-5-yl)vinyl)-4-methylbenzoate (302 mg, 58% yield) was prepared
as described for Example 5-C starting from
4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-5-vinyl-1H-pyrrolo[2,3-b]p-
yridine (340 mg, 1.12 mmol) and ethyl 3-iodo-4-methylbenzoate (360
mg, 1.24 mmol). .sup.1H NMR (600 MHz, CDCl.sub.3) .delta. 8.52 (s,
1H), 8.35 (d, J=1.2 Hz, 1H), 7.87 (dd, J=1.8, 7.8 Hz, 1H), 7.45 (d,
J=16.2 Hz, 1H), 7.34 (d, J=16.2 Hz, 1H), 7.31-7.27 (m, 2H), 6.81
(d, J=3.6 Hz, 1H), 5.71 (s, 2H), 4.45 (q, J=7.2 Hz, 2H), 4.43 (s,
3H), 3.62 (t, J=8.4 Hz, 2H), 2.51 (s, 3H), 1.46 (t, J=7.2 Hz, 3H),
0.97 (t, J=8.4 Hz, 2H), 0 (s, 9H). MS m/z: 467 [M+1].
C.
(E)-3-(2-(4-methoxy-1H-pyrrolo[2,3-b]pyridin-5-yl)vinyl)-4-methylbenzoi-
c acid
##STR00077##
[0438] To a solution of (E)-ethyl
3-(2-(4-methoxy-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyr-
idin-5-yl)vinyl)-4-methylbenzoate (298 mg, 0.64 mmol) in
CH.sub.2Cl.sub.2 (2 mL) was added TFA (0.24 mL, 3.19 mmol). The
reaction mixture was stirred for 1 hour and the organic solvent was
concentrated under reduced pressure. To a solution of the resulting
mixture in THF (2 mL) and MeOH (2 mL) was added LiOH.H.sub.2O (535
mg, 0.42 mmol) in water (2 mL). The reaction mixture was stirred
for 8 hours at room temperature. To a reaction mixture was added 1N
HCl solution to produce solid. The solid product was filtered and
dried with nitrogen gas flow. The title product (128 mg, 65% yield)
was used without further purification. MS m/z: 309 [M+1].
D.
(E)-N-(4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)phenyl)-3-(-
2-(4-methoxy-1H-pyrrolo[2,3-b]pyridin-5-yl)vinyl)-4-methylbenzamide
##STR00078##
[0440] To a solution of
(E)-3-(2-(4-methoxy-1H-pyrrolo[2,3-b]pyridin-5-yl)vinyl)-4-methylbenzoic
acid (20 mg, 0.064 mmol) in DMF (1 mL) were added HATU (73 mg, 0.19
mmol), DIEA (56 L, 0.32 mmol) and
4-((4-ethylpiperazin-1-yl)methyl)-3-(trifluoromethyl)benzenamine
(18 mg, 0.064 mmol). The reaction mixture was stirred for overnight
at 60.degree. C. after which, it was partitioned between ethyl
acetate and water. The organic layer was separated and the aqueous
layer was extracted with ethyl acetate. The combined organic
extracts were washed with brine, dried over MgSO.sub.4, filtered
and concentrated. The crude product was purified by Prep HPLC and
acetonitrile was removed under reduced pressure. The remained water
was freeze-dried to afford TFA salt formed title compound (23 mg,
51% yield). .sup.1H NMR (600 MHz, CD.sub.3OD) .delta. 8.31 (s, 1H),
8.17 (d, J=1.8 Hz, 1H), 8.10 (d, J=2.4 Hz, 1H), 7.91 (dd, J=1.8,
8.4 Hz, 1H), 7.71-7.67 (m, 2H), 7.41 (d, J=16.8 Hz, 1H), 7.32 (d,
J=16.2 Hz, 1H), 7.25 (d, J=7.8 Hz, 1H), 7.23 (d, J=3.6 Hz, 1H),
6.78 (d, J=3.6 Hz, 1H), 4.35 (s, 3H), 3.61 (s, 2H), 2.60-2.40 (m,
13H), 1.08 (t, J=7.2 Hz, 3H). MS m/z: 578 [M+1].
[0441] Additional compounds made by the synthetic route of Example
11 are found in FIGS. 11A to 11B.
Example 12
5-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-napht-
hamide
##STR00079##
##STR00080##
[0442] A.
5-(6-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3--
b]pyridin-4-yloxy)-1-naphthoic acid
##STR00081##
[0444] To a solution of
6-chloro-4-nitro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]py-
ridine (400 mg, 1.22 mmol) in DMSO (4 mL) were added
K.sub.2CO.sub.3 (507 mg, 3.67 mmol) and 5-hydroxy-1-naphthoic acid
(230 mg, 1.22 mmol). The reaction mixture was stirred for overnight
at 100.degree. C. after which, It was cooled to room temperature.
To the reaction mixture was added 1N HCl solution to reach pH=5.
The produced solid was filtered and dried nitrogen gas flow. The
title compound (380 mg, 66% yield) was used next reaction without
further purification. MS m/z: 469 [M+1].
B.
5-(6-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyrid-
in-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide
##STR00082##
[0446]
5-(6-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]p-
yridin-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide (92 mg,
88% yield) was prepared as described for Example 11-D starting from
5-(6-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-
-4-yloxy)-1-naphthoic acid (80 mg, 0.17 mmol) and
3-(trifluoromethyl)benzenamine (55 mg, 0.34 mmol). MS m/z: 612
[M+1].
C.
5-(6-chloro-1H-pyrrolo[2,3-b]pyridin-4-yloxy)-N-(3-(trifluoromethyl)phe-
nyl)-1-naphthamide
##STR00083##
[0448]
5-(6-chloro-1H-pyrrolo[2,3-b]pyridin-4-yloxy)-N-(3-(trifluoromethyl-
)phenyl)-1-naphthamide (48 mg, 71% yield) was prepared as described
for Example 9-D starting from
5-(6-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-
-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide (85 mg, 0.14
mmol). MS m/z: 482 [M+1].
D.
5-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-na-
phthamide
##STR00084##
[0450]
5-(1H-pyrrolo[2,3-b]pyridin-4-yloxy)-N-(3-(trifluoromethyl)phenyl)--
1-naphthamide (9 mg, 32% yield) was prepared as described for
Example 8 starting from
5-(6-chloro-1H-pyrrolo[2,3-b]pyridin-4-yloxy)-N-(3-(trifluoromethyl)pheny-
l)-1-naphthamide (30 mg, 0.062 mmol). MS m/z: 448 [M+1].
[0451] Additional compounds made by the synthetic route of Example
12 are found in FIGS. 12A to 12D.
Example 13
5-(6-(4-(piperazin-1-ylsulfonyl)phenylamino)-1H-pyrrolo[2,3-b]pyridin-4-yl-
oxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide
##STR00085##
##STR00086##
[0452] A. tert-butyl
4-(4-(4-(5-(3-(trifluoromethyl)phenylcarbamoyl)naphthalen-1-yloxy)-1-((2--
(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-6-ylamino)phenylsu-
lfonyl) piperazine-1-carboxylate
##STR00087##
[0454] tert-butyl
4-(4-(4-(5-(3-(trifluoromethyl)phenylcarbamoyl)naphthalen-1-yloxy)-1-((2--
(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-6-ylamino)phenylsu-
lfonyl)piperazine-1-carboxylate (42 mg, 70% yield) was prepared as
described for Example 5-B starting from
5-(6-chloro-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b]pyridin-
-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide (40 mg, 0.065
mmol) and tert-butyl
4-(4-aminophenylsulfonyl)piperazine-1-carboxylate (22 mg, 0.065
mmol). MS m/z: 917 [M+1].
B.
5-(6-(4-(piperazin-1-ylsulfonyl)phenylamino)-1H-pyrrolo[2,3-b]pyridin-4-
-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide
##STR00088##
[0456]
5-(6-(4-(piperazin-1-ylsulfonyl)phenylamino)-1H-pyrrolo[2,3-b]pyrid-
in-4-yloxy)-N-(3-(trifluoromethyl)phenyl)-1-naphthamide (22 mg, 64%
yield) was prepared as described for Example 9-D starting from
tert-butyl 4-(4-(4-(5-(3-(trifluoromethyl)phenylcarbamoyl)
naphthalen-1-yloxy)-1-((2-(trimethylsilyl)ethoxy)methyl)-1H-pyrrolo[2,3-b-
]pyridin-6-ylamino)phenylsulfonyl) piperazine-1-carboxylate (40 mg,
0.043 mmol). MS m/z: 687 [M+1].
[0457] Additional compounds made by the synthetic route of Example
13 are found in FIG. 13.
Example 14
Additional Compounds
[0458] The following compounds were made in a manner similar to the
synthesis found in Example 6.
TABLE-US-00001 .sup.1H NMR, and Structure Name or MS (m/z)
##STR00089## 4-methoxy-N-(2-methyl-5-((3-
(trifluoromethyl)phenyl)carbamoyl)phenyl)-
1H-pyrrolo[2,3-b]pyridine-5-carboxamide .sup.1H NMR (600 MHz,
DMSO-d.sub.6) .delta. 11.98 (s, 1H), 10.52 (s, 1H), 9.80 (s, 1H),
8.65 (s, 1H), 8.52 (s, 1H), 8.24 (s, 1H), 8.07 (d, J = 7.8 Hz, 1H),
7.72 1 (dd, J = 1.2, 7.8 Hz, 1H), 7.59 (t, J = 7.8 Hz, 1H), 7.47-
7.43 (m, 3H), 6.93 (s, 1H), 4.46 (s, 3H), 2.41 (s, 3H). MS m/z: 469
[M + 1] ##STR00090## 2 4-methoxy-N-(2-methyl-5-((4-((4-
methylpiperazin-1-yl)methyl)-3-
(trifluoromethyl)phenyl)carbamoyl)phenyl)-
1H-pyrrolo[2,3-b]pyridine-5-carboxamide MS m/z: 581 [M + 1]
##STR00091## 3 N-(5-(4-((4-ethylpiperazin-1-yl)methyl)-
3-(trifluoromethyl)benzamido)- 2-methylphenyl)-4-methoxy-1H-
pyrrolo[2,3-b]pyridine-5-carboxamide MS m/z: 595 [M + 1]
##STR00092## 4 3-((1H-pyrrolo[2,3-b]pyridin- 4-yl)oxy)-4-methyl-N-
(3-(trifluoromethyl)phenyl)benzamide MS m/z: 412 [M + 1]
##STR00093## 5 3-((1H-pyrrolo[2,3-b]pyridin- 4-yl)oxy)-4-methyl-N-
(3-(4-methyl-1H-imidazol-1-yl)-5- (trifluoromethyl)phenyl)benzamide
MS m/z: 492 [M + 1] ##STR00094## 6 3-((7H-pyrrolo[2,3-d]pyrimidin-
4-yl)oxy)-N-(4-((4-ethylpiperazin-1-
yl)methyl)-3-(trifluoromethyl)phenyl)- 4-methylbenzamide MS m/z:
539 [M + 1] ##STR00095## 7 3-((1H-pyrrolo[2,3-b]pyridin-
4-yl)oxy)-N-(4-((4-ethylpiperazin- 1-yl)methyl)-3-
(trifluoromethyl)phenyl)benzamide MS m/z: 524 [M + 1] ##STR00096##
8 4-((1H-pyrrolo[2,3-b]pyridin- 4-yl)oxy)-N-(4-((4-ethylpiperazin-
1-yl)methyl)-3- (trifluoromethyl)phenyl)- 3-methylbenzamide MS m/z:
538 [M + 1] ##STR00097## 9 N-(3-((1H-pyrrolo[2,3-b]pyridin-
4-yl)oxy)-4-methylphenyl)- 4-((4-ethylpiperazin-1-yl)methyl)-
3-(trifluoromethyl)benzamide MS m/z: 538 [M + 1] ##STR00098## 10
N-(4-((4-ethylpiperazin-1-yl)methyl)-
3-(trifluoromethyl)phenyl)-4-methyl- 3-((2-(methylamino)pyrimidin-
4-yl)oxy)benzamide MS m/z: 529 [M + 1] ##STR00099## 11
3-((1H-pyrazolo[3,4-d]pyrimidin- 4-yl)oxy)-N-(4-((4-ethylpiperazin-
1-yl)methyl)-3- (trifluoromethyl)phenyl)- 4-methylbenzamide MS m/z:
540 [M + 1] ##STR00100## 12 N-(4-((4-ethylpiperazin-1-yl)methyl)-
3-(trifluoromethyl)phenyl)- 4-methyl-3-((3-methyl-
1H-pyrazolo[3,4-d]pyrimidin-4- yl)oxy)benzamide MS m/z: 554 [M + 1]
##STR00101## 13 N-(4-((4-ethylpiperazin-1-yl)methyl)-
3-(trifluoromethyl)phenyl)- 4-methyl-3-((6-methyl-7H-
pyrrolo[2,3-d]pyrimidin-4- yl)oxy)benzamide MS m/z: 553 [M + 1]
##STR00102## 14 4-(5-((4-((4-ethylpiperazin- 1-yl)methyl)-3-
(trifluoromethyl)phenyl)carbamoyl)- 2-methylphenoxy)-N-
methylpicolinamide MS m/z: 556 [M + 1] ##STR00103## 15
N-(4-((4-ethylpiperazin-1-yl)methyl)- 3-(trifluoromethyl)phenyl)-
3-((3-(methoxymethyl)- 1H-pyrrolo[2,3-b]pyridin-
4-yl)oxy)-4-methylbenzamide MS m/z: 582 [M + 1] ##STR00104## 16
3-((6-chloro-1H-pyrrolo[2,3-b]pyridin-
4-yl)oxy)-N-(4-((4-ethylpiperazin- 1-yl)methyl)-3-
(trifluoromethyl)phenyl)- 4-methylbenzamide MS m/z: 572 [M + 1]
##STR00105## 17 3-((9H-purin-6-yl)oxy)-N-(4-((4-
ethylpiperazin-1-yl)methyl)-3- (trifluoromethyl)phenyl)-
4-methylbenzamide MS m/z: 540 [M + 1] ##STR00106## 18
3-((6,7-dimethoxyquinazolin-4- yl)oxy)-N-(4-((4-ethylpiperazin-1-
yl)methyl)-3-(trifluoromethyl)phenyl)- 4-methylbenzamide MS m/z:
610 [M + 1] ##STR00107## 19 3-((7H-pyrrolo[2,3-d]pyrimidin-
4-yl)thio)-N-(4-((4-ethylpiperazin- 1-yl)methyl)-3-
(trifluoromethyl)phenyl)benzamide MS m/z: 541 [M + 1] ##STR00108##
20 1-(3-((7H-pyrrolo[2,3-d]pyrimidin-
4-yl)oxy)-4-methylphenyl)-3-(4- ((4-ethylpiperazin-1-yl)methyl)-3-
(trifluoromethyl)phenyl)urea MS m/z: 554 [M + 1] ##STR00109## 21
3-((7H-pyrrolo[2,3-d]pyrimidin- 4-yl)oxy)-N-(4-((4-ethylpiperazin-
1-yl)methyl)phenyl)-4- methylbenzamide MS m/z: 471 [M + 1]
##STR00110## 22 3-((7H-pyrrolo[2,3-d]pyrimidin-
4-yl)oxy)-4-methyl-N-(3-methyl- 4-((4-methylpiperazin-1-
yl)methyl)phenyl)benzamide MS m/z: 471 [M + 1]
Example 15
B-Raf Cell Proliferation Assay
[0459] Ba/F3 cells and B-RAF transformed Ba/F3 cells were
maintained in RPMI 1640 medium supplemented with 10% fetal bovine
serum (FBS) in a 5% CO2 incubator at 37.degree. C. The
untransformed Ba/F3 cells are supplemented with 1.0 ng/ml of
recombinant IL3. 4000 Ba/F3 cells per well were plated in
quadruplicate in 384-well plates, in RPMI 1640 media supplemented
with 10% FBS and various concentrations of IL3. After 48 h of
growth, Brightglo reagent (Promega, Wis.) was added to each well.
Luminescent was read as counts/sec. XL-fit was used for IC50
analysis.
XI-1 Inhibits Phosphorylation of JNK and p38 but not Erk1/2
Following Stimulation with Anisomycin.
[0460] AZD628 is a potent pan-b-raf inhibitor, PLX4720 is a
selective b-raf inhibitor, BAY61-3036 is a reported Syk kinase
inhibitor
Phosphorylation Analysis
[0461] The phosphorylation levels of Erk, JNK, and p38 were
assessed by western blotting using phospho-specific antibodies
(results not shown). In brief, cells were treated for 15 min
with/without 2 uM anicomycin to stimulate the MAPK-signaling
pathways. Next various concentrations of the test compound were
added to treat cells for 90 minutes. Cells lysed in lysis buffer
(50 mM Tris-HCl pH 7.4, 150 mM NaCl, 5 mM EDTA, 1 mM EGTA, 1%
Nonidet P-40, 2 mM Na3VO4 and protease inhibitor cocktail (Roche)).
Equal amounts of lysate (50 g) were subjected to SDS-PAGE followed
by immunoblotting with phospho-specific
antibodies--anti-phospho-Erk (Thr202/Tyr204), anti-phospho-JNK
(Thr183/Tyr185) and anti-phospho-p38 (Thr180/Tyr182) antibodies--or
antibodies recognizing Erk (Cell signaling). Proteins were detected
by enhanced chemioluminescence (ECL-plus; Amersham), following the
manufacturer's guidelines.
INCORPORATION BY REFERENCE
[0462] The contents of all references (including literature
references, issued patents, published patent applications, and
co-pending patent applications) cited throughout this application
are hereby expressly incorporated herein in their entireties by
reference. Unless otherwise defined, all technical and scientific
terms used herein are accorded the meaning commonly known to one
with ordinary skill in the art.
EQUIVALENTS
[0463] Those skilled in the art will recognize, or be able to
ascertain using no more than routine experimentation, many
equivalents of the specific embodiments of the invention described
herein. Such equivalents are intended with be encompassed by the
following claims.
* * * * *