U.S. patent application number 14/238439 was filed with the patent office on 2015-02-19 for selective antisense compounds and uses thereof.
This patent application is currently assigned to ISIS PHARMACEUTICALS, INC.. The applicant listed for this patent is Michael Oestergarrd, Punit P. Seth, Eric E. Swayze. Invention is credited to Michael Oestergarrd, Punit P. Seth, Eric E. Swayze.
Application Number | 20150051389 14/238439 |
Document ID | / |
Family ID | 46717938 |
Filed Date | 2015-02-19 |
United States Patent
Application |
20150051389 |
Kind Code |
A1 |
Seth; Punit P. ; et
al. |
February 19, 2015 |
SELECTIVE ANTISENSE COMPOUNDS AND USES THEREOF
Abstract
Disclosed are oligomeric compounds which are useful for
hybridizing to a complementary nucleic acid, including but not
limited, to nucleic acids in a cell. The hybridization results in
modulation of the amount activity or expression of the target
nucleic acid in a cell.
Inventors: |
Seth; Punit P.; (Carlsbad,
CA) ; Oestergarrd; Michael; (Carlsbad, CA) ;
Swayze; Eric E.; (Encinitas, CA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Seth; Punit P.
Oestergarrd; Michael
Swayze; Eric E. |
Carlsbad
Carlsbad
Encinitas |
CA
CA
CA |
US
US
US |
|
|
Assignee: |
ISIS PHARMACEUTICALS, INC.
Carlsbad
CA
|
Family ID: |
46717938 |
Appl. No.: |
14/238439 |
Filed: |
August 8, 2012 |
PCT Filed: |
August 8, 2012 |
PCT NO: |
PCT/US12/50015 |
371 Date: |
July 7, 2014 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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61522659 |
Aug 11, 2011 |
|
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|
61596723 |
Feb 8, 2012 |
|
|
|
61603196 |
Feb 24, 2012 |
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Current U.S.
Class: |
536/24.5 |
Current CPC
Class: |
C12N 2310/321 20130101;
C12N 2310/11 20130101; C12N 2310/3231 20130101; C12N 2310/312
20130101; C12N 2310/315 20130101; C12N 15/111 20130101; C12N
2310/3125 20130101; C12N 2310/351 20130101; C12N 2310/316 20130101;
C12N 2320/34 20130101; C12N 15/113 20130101; C12N 2310/3341
20130101; C12N 2310/341 20130101; C12N 2310/321 20130101; C12N
2310/3525 20130101 |
Class at
Publication: |
536/24.5 |
International
Class: |
C12N 15/113 20060101
C12N015/113 |
Claims
1.-272. (canceled)
273. A oligomeric compound comprising a modified oligonucleotide
consisting of 10 to 30 linked nucleosides, wherein the modified
oligonucleotide has a modification motif comprising: a 5'-region
consisting of 2-8 linked 5'-region nucleosides, each independently
selected from among a modified nucleoside and an unmodified
deoxynucleoside, provided that at least one 5'-region nucleoside is
a modified nucleoside and wherein the 3'-most 5'-region nucleoside
is a modified nucleoside; a 3'-region consisting of 2-8 linked
3'-region nucleosides, each independently selected from among a
modified nucleoside and an unmodified deoxynucleoside, provided
that at least one 3'-region nucleoside is a modified nucleoside and
wherein the 5'-most 3'-region nucleoside is a modified nucleoside;
and a central region between the 5'-region and the 3'-region
consisting of 6-12 linked central region nucleosides, each
independently selected from among: a modified nucleoside and an
unmodified deoxynucleoside, wherein the 5'-most central region
nucleoside is an unmodified deoxynucleoside and the 3'-most central
region nucleoside is an unmodified deoxynucleoside; wherein the
modified oligonucleotide has a nucleobase sequence complementary to
the nucleobase sequence of a target region of a target nucleic
acid.
274. The oligomeric compound of claim 273, wherein the 5'-region
has a motif selected from among: AB, ABB, AAA, BBB, BBBAA, AAB,
BAA, BBAA, AABB, AAAB, ABBW, ABBWW, ABBB, ABBBB, ABAB, ABABAB,
ABABBB, ABABAA, AAABB, AAAABB, AABB, AAAAB, AABBB, ABBBB, BBBBB,
AAABW, AAAAA, and BBBBAA; wherein the 3'-region has a motif
selected from among: BBA, AAB, AAA, BBB, BBAA, AABB, WBBA, WAAB,
BBBA, BBBBA, BBBB, BBBBBA, ABBBBB, BBAAA, AABBB, BBBAA, BBBBA,
BBBBB, BABA, AAAAA, BBAAAA, AABBBB, BAAAA, and ABBBB; wherein the
central region has a nucleoside motif selected from among: DDDDDD,
DDDDDDD, DDDDDDDD, DDDDDDDDD, DDDDDDDDDD, DDDDDDDDD, DXDDDDDDD,
DDXDDDDDD, DDDXDDDDD, DDDDXDDDD, DDDDDXDDD, DDDDDDXDD, DDDDDDDXD,
DXXDDDDDD, DDDDDDXXD, DDXXDDDDD, DDDXXDDDD, DDDDXXDDD, DDDDDXXDD,
DXDDDDDXD, DXDDDDXDD, DXDDDXDDD, DXDDXDDDD, DXDXDDDDD, DDXDDDDXD,
DDXDDDXDD, DDXDDXDDD, DDXDXDDDD, DDDXDDDXD, DDDXDDXDD, DDDXDXDDD,
DDDDXDDXD, DDDDXDXDD, and DDDDDXDXD, DDDDDDDD, DXDDDDDD, DDXDDDDD,
DDDXDDDD, DDDDXDDD, DDDDDXDD, DDDDDDXD, DXDDDDXD, DXDDDXDD,
DXDDXDDD, DXDXDDDD, DXXDDDDD, DDXXDDDD, DDXDXDDD, DDXDDXDD,
DXDDDDXD, DDDXXDDD, DDDXDXDD, DDDXDDXD, DDDDXXDD, DDDDXDXD, and
DDDDDXXD, DXDDDDD, DDXDDDD, DDDXDDD, DDDDXDD, DDDDDXD, DXDDDXD,
DXDDXDD, DXDXDDD, DXXDDDD, DDXXDDD, DDXDXDD, DDXDDXD, DDDXXDD,
DDDXDXD, and DDDDXXD, DXDDDD, DDXDDD, DDDXDD, DDDDXD, DXXDDD,
DXDXDD, DXDDXD, DDXXDD, DDXDXD, and DDDXXD; and wherein each A is a
modified nucleoside of a first type, each B is a modified
nucleoside of a second type, each W is a modified nucleoside of a
first type, a second type, or a third type, each D is an unmodified
deoxynucleoside, and each X is a modified nucleoside or a modified
nucleobase.
275. The oligomeric compound of claim 274, wherein the 5'-region
has a motif selected from among: AB, ABB, AAA, BBB, BBBAA, AAB,
BAA, BBAA, AABB, ABBW, ABBWW, ABBB, ABBBB, ABAB, ABABAB, ABABBB,
ABABAA, AAABB, AAAABB, AABB, AAAAB, AABBB, ABBBB, BBBBB, AAABW, and
BBBBAA; and wherein the 3'-region has a BBA motif.
276. The oligomeric compound of claim 274, wherein each A
nucleoside comprises a bicyclic sugar moiety selected from among:
cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
277. The oligomeric compound of claim 274, wherein each A
nucleoside comprises a cEt.
278. The oligomeric compound of claim 276, wherein each B
nucleoside comprises a 2'-substituted sugar moiety comprising a
2'-substituent selected from among: a halogen, OCH.sub.3,
OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
279. The oligomeric compound of claim 278, wherein each B
nucleoside comprises a 2'-substituted sugar moiety comprising a
2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
280. The oligomeric compound of claim 274, wherein one of A or B
comprises a bicyclic sugar moiety, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a 2-thio-thymidine
nucleobase.
281. The oligomeric compound of claim 274, wherein one of A or B
comprises a bicyclic sugar moiety, another of A or B comprises a
2'-MOE sugar moiety, and W comprises FHNA.
282. The oligomeric compound of claim 274, wherein one of A or B
comprises cEt, another of A or B comprises a 2'-modified sugar
moiety, and W comprises a 2-thio-thymidine nucleobase.
283. The oligomeric compound of claim 274, wherein one of A or B
comprises cEt, another of A or B comprises a 2'-modified sugar
moiety, and W comprises FHNA.
284. The oligomeric compound of claim 274, wherein each A comprises
MOE, each B comprises cEt, and each W is selected from among cEt or
FHNA.
285. The oligomeric compound of claim 284, wherein each W comprises
cEt.
286. The oligomeric compound of claim 284, wherein each W comprises
2-thio-thymidine.
287. The oligomeric compound of claim 284, wherein each W comprises
FHNA.
288. The oligomeric compound of claim 274 comprising at least one
modified internucleoside linkage.
289. The oligomeric compound of claim 288, wherein each
internucleoside linkage is a modified internucleoside linkage.
290. The oligomeric compound of claim 289 comprising at least one
phosphorothioate internucleoside linkage.
291. The oligomeric compound of claim 288 comprising at least one
methylphosphonate internucleoside linkage.
292. The oligomeric compound of claim 275, wherein each A
nucleoside comprises a bicyclic sugar moiety selected from among:
cEt and LNA and each B nucleoside comprises a 2'-MOE.
Description
FIELD OF THE INVENTION
[0001] The present invention pertains generally to
chemically-modified oligonucleotides for use in research,
diagnostics, and/or therapeutics.
SEQUENCE LISTING
[0002] The present application is being filed along with a Sequence
Listing in electronic format. The Sequence Listing is provided as a
file entitled CORE0099WOSEQ.txt, created Aug. 1, 2012 which is 304
Kb in size. The information in the electronic format of the
sequence listing is incorporated herein by reference in its
entirety.
BACKGROUND OF THE INVENTION
[0003] Antisense compounds have been used to modulate target
nucleic acids. Antisense compounds comprising a variety of chemical
modifications and motifs have been reported. In certain instances,
such compounds are useful as research tools, diagnostic reagents,
and as therapeutic agents. In certain instances antisense compounds
have been shown to modulate protein expression by binding to a
target messenger RNA (mRNA) encoding the protein. In certain
instances, such binding of an antisense compound to its target mRNA
results in cleavage of the mRNA. Antisense compounds that modulate
processing of a pre-mRNA have also been reported. Such antisense
compounds alter splicing, interfere with polyadenlyation or prevent
formation of the 5'-cap of a pre-mRNA.
SUMMARY OF THE INVENTION
[0004] In certain embodiments, the present invention provides
oligomeric compounds comprising oligonucleotides. In certain
embodiments, such oligonucleotides comprise a region having a
gapmer motif. In certain embodiments, such oligonucleotides consist
of a region having a gapmer motif.
[0005] The present disclosure provides the following non-limiting
numbered embodiments:
Embodiment 1
[0006] A oligomeric compound comprising a modified oligonucleotide
consisting of 10 to 30 linked nucleosides, wherein the modified
oligonucleotide has a modification motif comprising: a 5'-region
consisting of 2-8 linked 5'-region nucleosides, each independently
selected from among a modified nucleoside and an unmodified
deoxynucleoside, provided that at least one 5'-region nucleoside is
a modified nucleoside and wherein the 3'-most 5'-region nucleoside
is a modified nucleoside; [0007] a 3'-region consisting of 2-8
linked 3'-region nucleosides, each independently selected from
among a modified nucleoside and an unmodified deoxynucleoside,
provided that at least one 3'-region nucleoside is a modified
nucleoside and wherein the 5'-most 3'-region nucleoside is a
modified nucleoside; and [0008] a central region between the
5'-region and the 3'-region consisting of 6-12 linked central
region nucleosides, each independently selected from among: a
modified nucleoside and an unmodified deoxynucleoside, wherein the
5'-most central region nucleoside is an unmodified deoxynucleoside
and the 3'-most central region nucleoside is an unmodified
deoxynucleoside; [0009] wherein the modified oligonucleotide has a
nucleobase sequence complementary to the nucleobase sequence of a
target region of a target nucleic acid.
Embodiment 2
[0009] [0010] The oligomeric compound of embodiment 1, wherein the
nucleobase sequence of the target region of the target nucleic acid
differs from the nucleobase sequence of at least one non-target
nucleic acid by 1-3 differentiating nucleobases.
Embodiment 3
[0010] [0011] The oligomeric compound of embodiment 1, the
nucleobase sequence of the target region of the target nucleic acid
differs from the nucleobase sequence of at least one non-target
nucleic acid by a single differentiating nucleobase.
Embodiment 4
[0011] [0012] The oligomeric compound of embodiment 2 or 3, wherein
the target nucleic acid and the non-target nucleic acid are alleles
of the same gene.
Embodiment 5
[0012] [0013] The oligomeric compound of embodiment 4, wherein the
single differentiating nucleobase is a single-nucleotide
polymorphism.
Embodiment 6
[0013] [0014] The oligomeric compound of embodiment 5, wherein the
single-nucleotide polymorphism is associated with a disease.
Embodiment 7
[0014] [0015] The oligomeric compound of embodiment 6, wherein the
disease is selected from among: Alzheimer's disease,
Creutzfeldt-Jakob disease, fatal familial insomnia, Alexander
disease, Parkinson's disease, amyotrophic lateral sclerosis,
dentato-rubral and pallido-luysian atrophy DRPA, spino-cerebellar
ataxia, Torsion dystonia, cardiomyopathy, chronic obstructive
pulmonary disease (COPD), liver disease, hepatocellular carcinoma,
systemic lupus erythematosus, hypercholesterolemia, breast cancer,
asthma, Type 1 diabetes, Rheumatoid arthritis, Graves disease, SLE,
spinal and bulbar muscular atrophy, Kennedy's disease, progressive
childhood posterior subcapsular cataracts, cholesterol gallstone
disease, arthrosclerosis, cardiovascular disease, primary
hypercalciuria, alpha-thallasemia, obsessive compulsive disorder,
Anxiety, comorbid depression, congenital visual defects,
hypertension, metabolic syndrome, prostate cancer, congential
myasthenic syndrome, peripheral arterial disease, atrial
fibrillation, sporadic pheochromocytoma, congenital malformations,
Machado-Joseph disease, Huntington's disease, and Autosomal
Dominant Retinitis Pigmentosa disease.
Embodiment 8
[0015] [0016] The oligomeric compound of embodiment 6, wherein the
single-nucleotide polymorphism is selected from among: rs6446723,
rs3856973, rs2285086, rs363092, rs916171, rs6844859, rs7691627,
rs4690073, rs2024115, rs11731237, rs362296, rs10015979, rs7659144,
rs363096, rs362273, rs16843804, rs362271, rs362275, rs3121419,
rs362272, rs3775061, rs34315806, rs363099, rs2298967, rs363088,
rs363064, rs363102, rs2798235, rs363080, rs363072, rs363125,
rs362303, rs362310, rs10488840, rs362325, rs35892913, rs363102,
rs363096, rs11731237, rs10015979, rs363080, rs2798235, rs1936032,
rs2276881, rs363070, rs35892913, rs12502045, rs6446723, rs7685686,
rs3733217, rs6844859, and rs362331.
Embodiment 9
[0016] [0017] The oligomeric compound of embodiment 8, wherein the
single-nucleotide polymorphism is selected from among: rs7685686,
rs362303 rs4690072 and rs363088
Embodiment 10
[0017] [0018] The oligomeric compound of embodiment 2 or 3, wherein
the target nucleic acid and the non-target nucleic acid are
transcripts from different genes.
Embodiment 11
[0018] [0019] The oligomeric compound of any of embodiments 1-10,
wherein the 3'-most 5'-region nucleoside comprises a bicyclic sugar
moiety.
Embodiment 12
[0019] [0020] The oligomeric compound of embodiment 11, wherein the
3'-most 5'-region nucleoside comprises a cEt sugar moiety.
Embodiment 13
[0020] [0021] The oligomeric compound of embodiment 11, wherein the
3'-most 5'-region nucleoside comprises an LNA sugar moiety.
Embodiment 14
[0021] [0022] The oligomeric compound of any of embodiments 1-13,
wherein the central region consists of 6-10 linked nucleosides.
Embodiment 15
[0022] [0023] The oligomeric compound of any of embodiments 1-14,
wherein the central region consists of 6-9 linked nucleosides.
Embodiment 16
[0023] [0024] The oligomeric compound of embodiment 15, wherein the
central region consists of 6 linked nucleosides.
Embodiment 17
[0024] [0025] The oligomeric compound of embodiment 15, wherein the
central region consists of 7 linked nucleosides.
Embodiment 18
[0025] [0026] The oligomeric compound of embodiment 15, wherein the
central region consists of 8 linked nucleosides.
Embodiment 19
[0026] [0027] The oligomeric compound of embodiment 15, wherein the
central region consists of 9 linked nucleosides.
Embodiment 20
[0027] [0028] The oligomeric compound of any of embodiments 1-19,
wherein each central region nucleoside is an unmodified
deoxynucleoside.
Embodiment 21
[0028] [0029] The oligomeric compound of any of embodiments 1-19,
wherein at least one central region nucleoside is a modified
nucleoside.
Embodiment 22
[0029] [0030] The oligomeric compound of embodiment 21, wherein one
central region nucleoside is a modified nucleoside and each of the
other central region nucleosides is an unmodified
deoxynucleoside.
Embodiment 23
[0030] [0031] The oligomeric compound of embodiment 21, wherein two
central region nucleosides are modified nucleosides and each of the
other central region nucleosides is an unmodified
deoxynucleoside.
Embodiment 24
[0031] [0032] The oligomeric compound of any of embodiments 21-23
wherein at least one modified central region nucleoside is an
RNA-like nucleoside.
Embodiment 25
[0032] [0033] The oligomeric compound of any of embodiments 21-23
comprising at least one modified central region nucleoside
comprising a modified sugar moiety.
Embodiment 26
[0033] [0034] The oligomeric compound of any of embodiments 21-25
comprising at least one modified central region nucleoside
comprising a 5'-methyl-2'-deoxy sugar moiety.
Embodiment 27
[0034] [0035] The oligomeric compound of any of embodiments 21-26
comprising at least one modified central region nucleoside
comprising a bicyclic sugar moiety.
Embodiment 28
[0035] [0036] The oligomeric compound of any of embodiments 21-27
comprising at least one modified central region nucleoside
comprising a cEt sugar moiety.
Embodiment 29
[0036] [0037] The oligomeric compound of any of embodiments 21-28
comprising at least one modified central region nucleoside
comprising an LNA sugar moiety.
Embodiment 30
[0037] [0038] The oligomeric compound of any of embodiments 21-29
comprising at least one modified central region nucleoside
comprising an .alpha.-LNA sugar moiety.
Embodiment 31
[0038] [0039] The oligomeric compound of any of embodiments 21-29
comprising at least one modified central region nucleoside
comprising a 2'-substituted sugar moiety.
Embodiment 32
[0039] [0040] The oligomeric compound of embodiment 31 wherein at
least one modified central region nucleoside comprises a
2'-substituted sugar moiety comprising a 2' substituent selected
from among: halogen, optionally substituted allyl, optionally
substituted amino, azido, optionally substituted SH, CN, OCN, CF3,
OCF3, O, S, or N(Rm)-alkyl; O, S, or N(Rm)-alkenyl; O, S or
N(Rm)-alkynyl; optionally substituted O-alkylenyl-O-alkyl,
optionally substituted alkynyl, optionally substituted alkaryl,
optionally substituted aralkyl, optionally substituted O-alkaryl,
optionally substituted O-aralkyl, O(CH2)2SCH3,
O--(CH2)2-O--N(Rm)(Rn) or O--CH2-C(.dbd.O)--N(Rm)(Rn), where each
Rm and Rn is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; [0041] wherein
each optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 33
[0041] [0042] The oligomeric compound of embodiment 32 wherein at
least one modified central region nucleoside comprises a
2'-substituted sugar moiety comprising a 2' substituent selected
from among: a halogen, OCH.sub.3, OCH.sub.2F, OCHF.sub.2,
OCF.sub.3, OCH.sub.2CH.sub.3, O(CH.sub.2).sub.2F,
OCH.sub.2CHF.sub.2, OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2,
O(CH.sub.2).sub.2--OCH.sub.3, O(CH.sub.2).sub.2--SCH.sub.3,
O(CH.sub.2).sub.2--OCF.sub.3,
O(CH.sub.2).sub.3--N(R.sub.1)(R.sub.2),
O(CH.sub.2).sub.2--ON(R.sub.1)(R.sub.2),
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(R.sub.1)(R.sub.2),
OCH.sub.2C(.dbd.O)--N(R.sub.1)(R.sub.2),
OCH.sub.2C(.dbd.O)--N(R.sub.3)--(CH.sub.2).sub.2--N(R.sub.1)(R.sub.2),
and
O(CH.sub.2).sub.2--N(R.sub.3)--C(.dbd.NR.sub.4)[N(R.sub.1)(R.sub.2)];
wherein R.sub.1, R.sub.2, R.sub.3 and R.sub.4 are each,
independently, H or C.sub.1-C.sub.6 alkyl.
Embodiment 34
[0042] [0043] The oligomeric compound of embodiment 33 wherein the
2' substituent is selected from among: a halogen, OCH.sub.3,
OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3 (MOE),
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 35
[0043] [0044] The oligomeric compound of any of embodiments 21-34
comprising at least one modified central region nucleoside
comprising a 2'-MOE sugar moiety.
Embodiment 36
[0044] [0045] The oligomeric compound of any of embodiments 21-35
comprising at least one modified central region nucleoside
comprising a 2'-OMe sugar moiety.
Embodiment 37
[0045] [0046] The oligomeric compound of any of embodiments 21-36
comprising at least one modified central region nucleoside
comprising a 2'-F sugar moiety.
Embodiment 38
[0046] [0047] The oligomeric compound of any of embodiments 21-37
comprising at least one modified central region nucleoside
comprising a 2'-(ara)-F sugar moiety.
Embodiment 39
[0047] [0048] The oligomeric compound of any of embodiments 21-38
comprising at least one modified central region nucleoside
comprising a sugar surrogate.
Embodiment 40
[0048] [0049] The oligomeric compound of embodiment 39 comprising
at least one modified central region nucleoside comprising an F-HNA
sugar moiety.
Embodiment 41
[0049] [0050] The oligomeric compound of embodiment 39 or 40
comprising at least one modified central region nucleoside
comprising an HNA sugar moiety.
Embodiment 42
[0050] [0051] The oligomeric compound of any of embodiments 21-41
comprising at least one modified central region nucleoside
comprising a modified nucleobase.
Embodiment 43
[0051] [0052] The oligomeric compound of embodiment 42 comprising
at least one modified central region nucleoside comprising a
modified nucleobase selected from a 2-thio pyrimidine and a
5-propyne pyrimidine.
Embodiment 44
[0052] [0053] The oligomeric compound of any of embodiments 21-43,
wherein the 2.sup.nd nucleoside from the 5'-end of the central
region is a modified nucleoside.
Embodiment 45
[0053] [0054] The oligomeric compound of any of embodiments 21-44,
wherein the 3.sup.rd nucleoside from the 5'-end of the central
region is a modified nucleoside.
Embodiment 46
[0054] [0055] The oligomeric compound of any of embodiments 21-45,
wherein the 4.sup.th nucleoside from the 5'-end of the central
region is a modified nucleoside.
Embodiment 47
[0055] [0056] The oligomeric compound of any of embodiments 21-46,
wherein the 5.sup.th nucleoside from the 5'-end of the central
region is a modified nucleoside.
Embodiment 48
[0056] [0057] The oligomeric compound of any of embodiments 21-47,
wherein the 6.sup.th nucleoside from the 5'-end of the central
region is a modified nucleoside.
Embodiment 49
[0057] [0058] The oligomeric compound of any of embodiments 21-48,
wherein the 8.sup.th nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 50
[0058] [0059] The oligomeric compound of any of embodiments 21-49,
wherein the 7.sup.th nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 51
[0059] [0060] The oligomeric compound of any of embodiments 21-50,
wherein the 6.sup.th nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 52
[0060] [0061] The oligomeric compound of any of embodiments 21-51,
wherein the 5.sup.th nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 53
[0061] [0062] The oligomeric compound of any of embodiments 21-52,
wherein the 4.sup.th nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 54
[0062] [0063] The oligomeric compound of any of embodiments 21-53,
wherein the 3.sup.rd nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 55
[0063] [0064] The oligomeric compound of any of embodiments 21-54,
wherein the 2.sup.nd nucleoside from the 3'-end of the central
region is a modified nucleoside.
Embodiment 56
[0064] [0065] The oligomeric compound of any of embodiments 21-55,
wherein the modified nucleoside is a 5'-methyl-2'-deoxy sugar
moiety.
Embodiment 57
[0065] [0066] The oligomeric compound of any of embodiments 21-55,
wherein the modified nucleoside is a 2-thio pyrimidine.
Embodiment 58
[0066] [0067] The oligomeric compound of any of embodiments 21-55,
wherein the central region comprises no region having more than 4
contiguous unmodified deoxynucleosides.
Embodiment 59
[0067] [0068] The oligomeric compound of any of embodiments 21-55,
wherein the central region comprises no region having more than 5
contiguous unmodified deoxynucleosides.
Embodiment 60
[0068] [0069] The oligomeric compound of any of embodiments 21-55,
wherein the central region comprises no region having more than 6
contiguous unmodified deoxynucleosides.
Embodiment 61
[0069] [0070] The oligomeric compound of any of embodiments 21-55,
wherein the central region comprises no region having more than 7
contiguous unmodified deoxynucleosides.
Embodiment 62
[0070] [0071] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDDDDDDD, DDDDXDDDDD; DDDDDXDDDDD; DDDXDDDDD;
DDDDXDDDDDD; DDDDXDDDD; DDXDDDDDD; DDDXDDDDDD; DXDDDDDD;
DDXDDDDDDD; DDXDDDDD; DDXDDDXDDD; DDDXDDDXDDD; DXDDDXDDD;
DDXDDDXDD; DDXDDDDXDDD; DDXDDDDXDD; DXDDDDXDDD; DDDDXDDD; DDDXDDD;
DXDDDDDDD; DDDDXXDDD; and DXXDXXDXX; wherein [0072] each D is an
unmodified deoxynucleoside; and each X is a modified
nucleoside.
Embodiment 63
[0072] [0073] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDDDDDD; DXDDDDDDD; DDXDDDDDD; DDDXDDDDD; DDDDXDDDD;
DDDDDXDDD; DDDDDDXDD; DDDDDDDXD; DXXDDDDDD; DDDDDDXXD; DDXXDDDDD;
DDDXXDDDD; DDDDXXDDD; DDDDDXXDD; DXDDDDDXD; DXDDDDXDD; DXDDDXDDD;
DXDDXDDDD; DXDXDDDDD; DDXDDDDXD; DDXDDDXDD; DDXDDXDDD; DDXDXDDDD;
DDDXDDDXD; DDDXDDXDD; DDDXDXDDD; DDDDXDDXD; DDDDXDXDD; and
DDDDDXDXD wherein each D is an unmodified deoxynucleoside; and each
X is a modified nucleoside.
Embodiment 64
[0073] [0074] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDXDDDD, DXDDDDDDD, DXXDDDDDD, DDXDDDDDD, DDDXDDDDD,
DDDDXDDDD, DDDDDXDDD, DDDDDDXDD, and DDDDDDDXD.
Embodiment 65
[0074] [0075] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDDDDD, DXDDDDDD, DDXDDDDD, DDDXDDDD, DDDDXDDD,
DDDDDXDD, DDDDDDXD, DXDDDDXD, DXDDDXDD, DXDDXDDD, DXDXDDDD,
DXXDDDDD, DDXXDDDD, DDXDXDDD, DDXDDXDD, DXDDDDXD, DDDXXDDD,
DDDXDXDD, DDDXDDXD, DDDDXXDD, DDDDXDXD, and DDDDDXXD.
Embodiment 66
[0075] [0076] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDDDD, DXDDDDD, DDXDDDD, DDDXDDD, DDDDXDD, DDDDDXD,
DXDDDXD, DXDDXDD, DXDXDDD, DXXDDDD, DDXXDDD, DDXDXDD, DDXDDXD,
DDDXXDD, DDDXDXD, and DDDDXXD.
Embodiment 67
[0076] [0077] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDDD, DXDDDD, DDXDDD, DDDXDD, DDDDXD, DXXDDD, DXDXDD,
DXDDXD, DDXXDD, DDXDXD, and DDDXXD.
Embodiment 68
[0077] [0078] The oligomeric compound of any of embodiments 1-14 or
21-59, wherein the central region has a nucleoside motif selected
from among: DDDDDD, DDDDDDD, DDDDDDDD, DDDDDDDDD, DXDDDD, DDXDDD,
DDDXDD, DDDDXD, DXDDDDD, DDXDDDD, DDDXDDD, DDDDXDD, DDDDDXD,
DXDDDDDD, DDXDDDDD, DDDXDDDD, DDDDXDDD, DDDDDXDD, DDDDDDXD,
DXDDDDDDD; DDXDDDDDD, DDDXDDDDD, DDDDXDDDD, DDDDDXDDD, DDDDDDXDD,
DDDDDDDXD, DXDDDDDDDD, DDXDDDDDDD, DDDXDDDDDD, DDDDXDDDDD,
DDDDDXDDDD, DDDDDDXDDD, DDDDDDDXDD, and DDDDDDDDXD.
Embodiment 69
[0078] [0079] The oligomeric compound of embodiments 62-68, wherein
each X comprises a modified nucleobase.
Embodiment 70
[0079] [0080] The oligomeric compound of embodiments 62-68, wherein
each X comprises a modified sugar moiety.
Embodiment 71
[0080] [0081] The oligomeric compound of embodiments 62-68, wherein
each X comprises 2-thio-thymidine.
Embodiment 72
[0081] [0082] The oligomeric compound of embodiments 62-68, wherein
each X nucleoside comprises an F-HNA sugar moiety.
Embodiment 73
[0082] [0083] The oligomeric compound of embodiments 62-68, wherein
the nucleobase sequence of the target region of the target nucleic
acid differs from the nucleobase sequence of at least one
non-target nucleic acid by a single differentiating nucleobase, and
wherein the location of the single differentiating nucleobase is
represented by X.
Embodiment 74
[0083] [0084] The oligomeric compound of embodiment 73, wherein the
target nucleic acid and the non-target nucleic acid are alleles of
the same gene.
Embodiment 75
[0084] [0085] The oligomeric compound of embodiment 73, wherein the
single differentiating nucleobase is a single-nucleotide
polymorphism.
Embodiment 76
[0085] [0086] The oligomeric compound of any of embodiments 1-75,
wherein the 5' region consists of 2 linked 5'-region
nucleosides.
Embodiment 77
[0086] [0087] The oligomeric compound of any of embodiments 1-75,
wherein the 5' region consists of 3 linked 5'-region
nucleosides.
Embodiment 78
[0087] [0088] The oligomeric compound of any of embodiments 1-75,
wherein the 5' region consists of 4 linked 5'-region
nucleosides.
Embodiment 79
[0088] [0089] The oligomeric compound of any of embodiments 1-75,
wherein the 5' region consists of 5 linked 5'-region
nucleosides.
Embodiment 80
[0089] [0090] The oligomeric compound of any of embodiments 1-75,
wherein the 5' region consists of 6 linked 5'-region
nucleosides.
Embodiment 81
[0090] [0091] The oligomeric compound of any of embodiments 1-80,
wherein at least one 5'-region nucleoside is an unmodified
deoxynucleoside.
Embodiment 82
[0091] [0092] The oligomeric compound of any of embodiments 1-80,
wherein each 5'-region nucleoside is a modified nucleoside.
Embodiment 83
[0092] [0093] The oligomeric compound of any of embodiments 1-80
wherein at least one 5'-region nucleoside is an RNA-like
nucleoside.
Embodiment 84
[0093] [0094] The oligomeric compound of any of embodiments 1-80
wherein each 5'-region nucleoside is an RNA-like nucleoside.
Embodiment 85
[0094] [0095] The oligomeric compound of any of embodiments 1-80
comprising at least one modified 5'-region nucleoside comprising a
modified sugar.
Embodiment 86
[0095] [0096] The oligomeric compound of embodiment 80 comprising
at least one modified 5'-region nucleoside comprising a bicyclic
sugar moiety.
Embodiment 87
[0096] [0097] The oligomeric compound of embodiment 86 comprising
at least one modified 5'-region nucleoside comprising a cEt sugar
moiety.
Embodiment 88
[0097] [0098] The oligomeric compound of embodiment 85 or 86
comprising at least one modified 5'-region nucleoside comprising an
LNA sugar moiety.
Embodiment 89
[0098] [0099] The oligomeric compound of any of embodiments 76-80
comprising of at least one modified 5'-region nucleoside comprising
a 2'-substituted sugar moiety.
Embodiment 90
[0099] [0100] The oligomeric compound of embodiment 89 wherein at
least one modified central region nucleoside comprises a
2'-substituted sugar moiety comprising a 2' substituent selected
from among: halogen, optionally substituted allyl, optionally
substituted amino, azido, optionally substituted SH, CN, OCN,
CF.sub.3, OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or
N(R.sub.m)-alkenyl; O, S or N(R.sub.m)-alkynyl; optionally
substituted O-alkylenyl-O-alkyl, optionally substituted alkynyl,
optionally substituted alkaryl, optionally substituted aralkyl,
optionally substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; [0101] wherein
each optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 91
[0101] [0102] The oligomeric compound of embodiment 90 wherein at
least one modified 5'-region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2'-substituent selected from among: a
halogen, OCH.sub.3, OCH.sub.2F, OCHF.sub.2, OCF.sub.3,
OCH.sub.2CH.sub.3, O(CH.sub.2).sub.2F, OCH.sub.2CHF.sub.2,
OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2,
O(CH.sub.2).sub.2--OCH.sub.3 (MOE), O(CH.sub.2).sub.2--SCH.sub.3,
O(CH.sub.2).sub.2--OCF.sub.3,
O(CH.sub.2).sub.3--N(R.sub.1)(R.sub.2),
O(CH.sub.2).sub.2--ON(R.sub.1)(R.sub.2),
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(R.sub.1)(R.sub.2),
OCH.sub.2C(.dbd.O)--N(R.sub.1)(R.sub.2),
OCH.sub.2C(.dbd.O)--N(R.sub.3)--(CH.sub.2).sub.2--N(R.sub.1)(R.sub.2),
and
O(CH.sub.2).sub.2--N(R.sub.3)--C(.dbd.NR.sub.4)[N(R.sub.1)(R.sub.2)];
wherein R.sub.1, R.sub.2, R.sub.3 and R.sub.4 are each,
independently, H or C.sub.1-C.sub.6 alkyl.
Embodiment 92
[0102] [0103] The oligomeric compound of embodiment 91, wherein the
2'-substituent is selected from among: a halogen, OCH.sub.3,
OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 93
[0103] [0104] The oligomeric compound of any of embodiments 89-92
comprising at least one modified 5'-region nucleoside comprising a
2'-MOE sugar moiety.
Embodiment 94
[0104] [0105] The oligomeric compound of any of embodiments 89-92
comprising at least one modified 5'-region nucleoside comprising a
2'-OMe sugar moiety.
Embodiment 95
[0105] [0106] The oligomeric compound of any of embodiments 89-92
comprising at least one modified 5'-region nucleoside comprising a
2'-F sugar moiety.
Embodiment 96
[0106] [0107] The oligomeric compound of any of embodiments 89-92
comprising at least one modified 5'-region nucleoside comprising a
2'-(ara)-F sugar moiety.
Embodiment 97
[0107] [0108] The oligomeric compound of any of embodiments 82-96
comprising of at least one modified 5'-region nucleoside comprising
a sugar surrogate.
Embodiment 98
[0108] [0109] The oligomeric compound of embodiment 97 comprising
at least one modified 5'-region nucleoside comprising an F-HNA
sugar moiety.
Embodiment 99
[0109] [0110] The oligomeric compound of embodiment 97 or 98
comprising at least one modified 5'-region nucleoside comprising an
HNA sugar moiety.
Embodiment 100
[0110] [0111] The oligomeric compound of any of embodiments 1-99
comprising at least one modified 5'-region nucleoside comprising a
modified nucleobase.
Embodiment 101
[0111] [0112] The oligomeric compound of embodiment 100, wherein
the modified nucleoside comprises 2-thio-thymidine.
Embodiment 102
[0112] [0113] The oligomeric compound of any of embodiments 1-101,
wherein the 5'-region has a motif selected from among: [0114] ADDA;
ABDAA; ABBA; ABB; ABAA; AABAA; AAABAA; AAAABAA; AAAAABAA; AAABAA;
AABAA; ABAB; ABADB; ABADDB; AAABB; AAAAA; ABBDC; ABDDC; ABBDCC;
ABBDDC; ABBDCC; ABBC; AA; AAA; AAAA; AAAAB; AAAAAAA; AAAAAAAA;
ABBB; AB; ABAB; AAAAB; AABBB; AAAAB; and AABBB, wherein each A is a
modified nucleoside of a first type, each B is a modified
nucleoside of a second type, each C is a modified nucleoside of a
third type, and each D is an unmodified deoxynucleoside.
Embodiment 103
[0114] [0115] The oligomeric compound of any of embodiments 1-101,
wherein the 5'-region has a motif selected from among: [0116] AB,
ABB, AAA, BBB, BBBAA, AAB, BAA, BBAA, AABB, AAAB, ABBW, ABBWW,
ABBB, ABBBB, ABAB, ABABAB, ABABBB, ABABAA, AAABB, AAAABB, AABB,
AAAAB, AABBB, ABBBB, BBBBB, AAABW, AAAAA, BBBBAA, and AAABW wherein
each A is a modified nucleoside of a first type, each B is a
modified nucleoside of a second type, and each W is a modified
nucleoside of a third type.
Embodiment 104
[0116] [0117] The oligomeric compound of any of embodiments 1-101,
wherein the 5'-region has a motif selected from among: ABB; ABAA;
AABAA; AAABAA; ABAB; ABADB; AAABB; AAAAA; AA; AAA; AAAA; AAAAB;
ABBB; AB; and ABAB, wherein each A is a modified nucleoside of a
first type, each B is a modified nucleoside of a second type, and
each W is a modified nucleoside of a third type.
Embodiment 105
[0117] [0118] The oligomeric compound of embodiments 102-104,
wherein each A nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 106
[0118] [0119] The oligomeric compound of embodiment 105 wherein at
least one central region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2' substituent selected from among:
halogen, optionally substituted allyl, optionally substituted
amino, azido, optionally substituted SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; optionally substituted
O-alkylenyl-O-alkyl, optionally substituted alkynyl, optionally
substituted alkaryl, optionally substituted aralkyl, optionally
substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; wherein each
optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 107
[0119] [0120] The oligomeric compound of embodiment 102-106,
wherein each A nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 108
[0120] [0121] The oligomeric compound of embodiment 107, wherein
each A nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 109
[0121] [0122] The oligomeric compound of embodiments 102-106,
wherein each A nucleoside comprises a bicyclic sugar moiety.
Embodiment 110
[0122] [0123] The oligomeric compound of embodiment 109, wherein
each A nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 111
[0123] [0124] The oligomeric compound of any of embodiments
102-110, wherein each A comprises a modified nucleobase.
Embodiment 112
[0124] [0125] The oligomeric compound of embodiment 111, wherein
each A comprises a modified nucleobase selected from among a 2-thio
pyrimidine and a 5-propyne pyrimidine.
Embodiment 113
[0125] [0126] The oligomeric compound of embodiment 112, wherein
each A comprises 2-thio-thymidine.
Embodiment 114
[0126] [0127] The oligomeric compound of embodiment 102-106,
wherein each A nucleoside comprises an unmodified 2'-deoxyfuranose
sugar moiety.
Embodiment 115
[0127] [0128] The oligomeric compound of embodiment 102-106,
wherein each A nucleoside comprises an F-HNA sugar moiety.
Embodiment 116
[0128] [0129] The oligomeric compound of any of embodiments
102-115, wherein each B nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 117
[0129] [0130] The oligomeric compound of embodiment 116, wherein at
least one central region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2' substituent selected from among:
halogen, optionally substituted allyl, optionally substituted
amino, azido, optionally substituted SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; optionally substituted
O-alkylenyl-O-alkyl, optionally substituted alkynyl, optionally
substituted alkaryl, optionally substituted aralkyl, optionally
substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; wherein each
optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 118
[0130] [0131] The oligomeric compound of embodiment 117, wherein
each B nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 119
[0131] [0132] The oligomeric compound of embodiment 118, wherein
each B nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 120
[0132] [0133] The oligomeric compound of any of embodiments
102-115, wherein each B nucleoside comprises a bicyclic sugar
moiety.
Embodiment 121
[0133] [0134] The oligomeric compound of embodiment 120, wherein
each B nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 122
[0134] [0135] The oligomeric compound of any of embodiments
102-115, wherein each B comprises a modified nucleobase.
Embodiment 123
[0135] [0136] The oligomeric compound of embodiment 122, wherein
each B comprises a modified nucleobase selected from among a 2-thio
pyrimidine and a 5-propyne pyrimidine.
Embodiment 124
[0136] [0137] The oligomeric compound of embodiment 123, wherein
each B comprises 2-thio-thymidine.
Embodiment 125
[0137] [0138] The oligomeric compound of embodiment 102-106,
wherein each B nucleoside comprises an unmodified 2'-deoxyfuranose
sugar moiety.
Embodiment 126
[0138] [0139] The oligomeric compound of embodiment 102-115,
wherein each B nucleoside comprises an F-HNA sugar moiety.
Embodiment 127
[0139] [0140] The oligomeric compound of any of embodiments
102-126, wherein each C nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 128
[0140] [0141] The oligomeric compound of embodiment 127, wherein at
least one central region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2' substituent selected from among:
halogen, optionally substituted allyl, optionally substituted
amino, azido, optionally substituted SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; optionally substituted
O-alkylenyl-O-alkyl, optionally substituted alkynyl, optionally
substituted alkaryl, optionally substituted aralkyl, optionally
substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; wherein each
optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 129
[0141] [0142] The oligomeric compound of embodiment 128, wherein
each C nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 130
[0142] [0143] The oligomeric compound of embodiment 129, wherein
each C nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 131
[0143] [0144] The oligomeric compound of any of embodiments
102-126, wherein each C nucleoside comprises a bicyclic sugar
moiety.
Embodiment 132
[0144] [0145] The oligomeric compound of embodiment 131, wherein
each C nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 133
[0145] [0146] The oligomeric compound of any of embodiments
102-126, wherein each C comprises a modified nucleobase.
Embodiment 134
[0146] [0147] The oligomeric compound of embodiment 133, wherein
each C comprises a modified nucleobase selected from among a 2-thio
pyrimidine and a 5-propyne pyrimidine.
Embodiment 135
[0147] [0148] The oligomeric compound of embodiment 134, wherein
each C comprises 2-thio-thymidine.
Embodiment 136
[0148] [0149] The oligomeric compound of embodiment 102-126,
wherein each C comprises an F--HNA sugar moiety.
Embodiment 137
[0149] [0150] The oligomeric compound of embodiment 102-126,
wherein each C nucleoside comprises an unmodified 2'-deoxyfuranose
sugar moiety.
Embodiment 138
[0150] [0151] The oligomeric compound of any of embodiments
102-138, wherein each W nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 139
[0151] [0152] The oligomeric compound of embodiment 138, wherein at
least one central region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2' substituent selected from among:
halogen, optionally substituted allyl, optionally substituted
amino, azido, optionally substituted SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; optionally substituted
O-alkylenyl-O-alkyl, optionally substituted alkynyl, optionally
substituted alkaryl, optionally substituted aralkyl, optionally
substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; wherein each
optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 140
[0152] [0153] The oligomeric compound of embodiment 139, wherein
each W nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 141
[0153] [0154] The oligomeric compound of embodiment 139, wherein
each W nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 142
[0154] [0155] The oligomeric compound of any of embodiments
102-137, wherein each W nucleoside comprises a bicyclic sugar
moiety.
Embodiment 143
[0155] [0156] The oligomeric compound of embodiment 142, wherein
each W nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 144
[0156] [0157] The oligomeric compound of any of embodiments
102-137, wherein each W comprises a modified nucleobase.
Embodiment 145
[0157] [0158] The oligomeric compound of embodiment 144, wherein
each W comprises a modified nucleobase selected from among a 2-thio
pyrimidine and a 5-propyne pyrimidine.
Embodiment 146
[0158] [0159] The oligomeric compound of embodiment 145, wherein
each W comprises 2-thio-thymidine.
Embodiment 147
[0159] [0160] The oligomeric compound of embodiment 102-137,
wherein each W comprises an F--HNA sugar moiety.
Embodiment 148
[0160] [0161] The oligomeric compound of embodiment 102-137,
wherein each W nucleoside comprises an unmodified 2'-deoxyfuranose
sugar moiety.
Embodiment 149
[0161] [0162] The oligomeric compound of any of embodiments 1-148,
wherein the 3' region consists of 2 linked 3'-region
nucleosides.
Embodiment 150
[0162] [0163] The oligomeric compound of any of embodiments 1-148,
wherein the 3' region consists of 3 linked 3'-region
nucleosides.
Embodiment 151
[0163] [0164] The oligomeric compound of any of embodiments 1-148,
wherein the 3' region consists of 4 linked 3'-region
nucleosides.
Embodiment 152
[0164] [0165] The oligomeric compound of any of embodiments 1-148,
wherein the 3' region consists of 5 linked 3'-region
nucleosides.
Embodiment 153
[0165] [0166] The oligomeric compound of any of embodiments 1-148,
wherein the 3' region consists of 6 linked 3'-region
nucleosides.
Embodiment 154
[0166] [0167] The oligomeric compound of any of embodiments 1-153,
wherein at least one 3'-region nucleoside is an unmodified
deoxynucleoside.
Embodiment 155
[0167] [0168] The oligomeric compound of any of embodiments 1-154,
wherein each 3'-region nucleoside is a modified nucleoside.
Embodiment 156
[0168] [0169] The oligomeric compound of any of embodiments 1-153,
wherein at least one 3'-region nucleoside is an RNA-like
nucleoside.
Embodiment 157
[0169] [0170] The oligomeric compound of any of embodiments 1-154,
wherein each 3'-region nucleoside is an RNA-like nucleoside.
Embodiment 158
[0170] [0171] The oligomeric compound of any of embodiments 1-153,
comprising at least one modified 3'-region nucleoside comprising a
modified sugar.
Embodiment 159
[0171] [0172] The oligomeric compound of embodiment 158, comprising
at least one modified 3'-region nucleoside comprising a bicyclic
sugar moiety.
Embodiment 160
[0172] [0173] The oligomeric compound of embodiment 159, comprising
at least one modified 3'-region nucleoside comprising a cEt sugar
moiety.
Embodiment 161
[0173] [0174] The oligomeric compound of embodiment 159, comprising
at least one modified 3'-region nucleoside comprising an LNA sugar
moiety.
Embodiment 162
[0174] [0175] The oligomeric compound of any of embodiments 1-162
comprising of at least one modified 3'-region nucleoside comprising
a 2'-substituted sugar moiety.
Embodiment 163
[0175] [0176] The oligomeric compound of embodiment 162, wherein at
least one central region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2' substituent selected from among:
halogen, optionally substituted allyl, optionally substituted
amino, azido, optionally substituted SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; optionally substituted
O-alkylenyl-O-alkyl, optionally substituted alkynyl, optionally
substituted alkaryl, optionally substituted aralkyl, optionally
substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; wherein each
optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 164
[0176] [0177] The oligomeric compound of embodiment 163 wherein at
least one modified 3'-region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2'-substituent selected from among: a
halogen, OCH.sub.3, OCH.sub.2F, OCHF.sub.2, OCF.sub.3,
OCH.sub.2CH.sub.3, O(CH.sub.2).sub.2F, OCH.sub.2CHF.sub.2,
OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2,
O(CH.sub.2).sub.2--OCH.sub.3 (MOE), O(CH.sub.2).sub.2--SCH.sub.3,
O(CH.sub.2).sub.2--OCF.sub.3,
O(CH.sub.2).sub.3--N(R.sub.1)(R.sub.2),
O(CH.sub.2).sub.2--ON(R.sub.1)(R.sub.2),
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(R.sub.1)(R.sub.2),
OCH.sub.2C(.dbd.O)--N(R.sub.1)(R.sub.2),
OCH.sub.2C(.dbd.O)--N(R.sub.3)--(CH.sub.2).sub.2--N(R.sub.1)(R.sub.2),
and
O(CH.sub.2).sub.2--N(R.sub.3)--C(.dbd.NR.sub.4)[N(R.sub.1)(R.sub.2)];
wherein R.sub.1, R.sub.2, R.sub.3 and R.sub.4 are each,
independently, H or C.sub.1-C.sub.6 alkyl.
Embodiment 165
[0177] [0178] The oligomeric compound of embodiment 164, wherein
the 2'-substituent is selected from among: a halogen, OCH.sub.3,
OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 166
[0178] [0179] The oligomeric compound of any of embodiments 162-165
comprising at least one modified 3'-region nucleoside comprising a
2'-MOE sugar moiety.
Embodiment 167
[0179] [0180] The oligomeric compound of any of embodiments 162-166
comprising at least one modified 3'-region nucleoside comprising a
2'-OMe sugar moiety.
Embodiment 168
[0180] [0181] The oligomeric compound of any of embodiments 162-167
comprising at least one modified 3'-region nucleoside comprising a
2'-F sugar moiety.
Embodiment 169
[0181] [0182] The oligomeric compound of any of embodiments 162-168
comprising at least one modified 3'-region nucleoside comprising a
2'-(ara)-F sugar moiety.
Embodiment 170
[0182] [0183] The oligomeric compound of any of embodiments 162-169
comprising of at least one modified 3'-region nucleoside comprising
a sugar surrogate.
Embodiment 171
[0183] [0184] The oligomeric compound of embodiment 170 comprising
at least one modified 3'-region nucleoside comprising an F-HNA
sugar moiety.
Embodiment 172
[0184] [0185] The oligomeric compound of embodiment 170 comprising
at least one modified 3'-region nucleoside comprising an HNA sugar
moiety.
Embodiment 173
[0185] [0186] The oligomeric compound of any of embodiments 1-172
comprising at least one modified 3'-region nucleoside comprising a
modified nucleobase.
Embodiment 174
[0186] [0187] The oligomeric compound of any of embodiments 1-173,
wherein each A comprises a 2'-substituted sugar moiety comprising a
2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3, and each B comprises a bicyclic sugar
moiety selected from among: LNA and cEt.
Embodiment 175
[0187] [0188] The oligomeric compound of embodiment 174, wherein
each A comprises O(CH.sub.2).sub.2--OCH.sub.3 and each B comprises
cEt.
Embodiment 176
[0188] [0189] The oligomeric compound of any of embodiments 1-175,
wherein the 3'-region has a motif selected from among: ABB, ABAA,
AAABAA, AAAAABAA, AABAA, AAAABAA, AAABAA, ABAB, AAAAA, AAABB,
AAAAAAAA, AAAAAAA, AAAAAA, AAAAB, AAAA, AAA, AA, AB, ABBB, ABAB,
AABBB, wherein each A is a modified nucleoside of a first type,
each B is a modified nucleoside of a second type.
Embodiment 177
[0189] [0190] The oligomeric compound of embodiments 1-175, wherein
the 3'-region has a motif selected from among: ABB; AAABAA; AABAA;
AAAABAA; AAAAA; AAABB; AAAAAAAA; AAAAAAA; AAAAAA; AAAAB; AB; ABBB;
and ABAB, wherein each A is a modified nucleoside of a first type,
each B is a modified nucleoside of a second type.
Embodiment 178
[0190] [0191] The oligomeric compound of embodiments 1-175, wherein
the 3'-region has a motif selected from among: BBA, AAB, AAA, BBB,
BBAA, AABB, WBBA, WAAB, BBBA, BBBBA, BBBB, BBBBBA, ABBBBB, BBAAA,
AABBB, BBBAA, BBBBA, BBBBB, BABA, AAAAA, BBAAAA, AABBBB, BAAAA, and
ABBBB, wherein each A is a modified nucleoside of a first type,
each B is a modified nucleoside of a second type, and each W is a
modified nucleoside of a first type, a second type, or a third
type.
Embodiment 179
[0191] [0192] The oligomeric compound of embodiments 176-178,
wherein each A nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 180
[0192] [0193] The oligomeric compound of embodiments 176-178,
wherein at least one central region nucleoside comprises a
2'-substituted sugar moiety comprising a 2' substituent selected
from among: halogen, optionally substituted allyl, optionally
substituted amino, azido, optionally substituted SH, CN, OCN,
CF.sub.3, OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or
N(R.sub.m)-alkenyl; O, S or N(R.sub.m)-alkynyl; optionally
substituted O-alkylenyl-O-alkyl, optionally substituted alkynyl,
optionally substituted alkaryl, optionally substituted aralkyl,
optionally substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; [0194] wherein
each optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 181
[0194] [0195] The oligomeric compound of embodiment 180, wherein
each A nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 182
[0195] [0196] The oligomeric compound of embodiment 181, wherein
each A nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 183
[0196] [0197] The oligomeric compound of embodiments 176-178,
wherein each A nucleoside comprises a bicyclic sugar moiety.
Embodiment 184
[0197] [0198] The oligomeric compound of embodiment 183, wherein
each A nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 185
[0198] [0199] The oligomeric compound of any of embodiments
176-178, wherein each B nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 186
[0199] [0200] The oligomeric compound of embodiment 185, wherein at
least one modified central region nucleoside comprises a
2'-substituted sugar moiety comprising a 2' substituent selected
from among: halogen, optionally substituted allyl, optionally
substituted amino, azido, optionally substituted SH, CN, OCN,
CF.sub.3, OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or
N(R.sub.m)-alkenyl; O, S or N(R.sub.m)-alkynyl; optionally
substituted O-alkylenyl-O-alkyl, optionally substituted alkynyl,
optionally substituted alkaryl, optionally substituted aralkyl,
optionally substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; [0201] wherein
each optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 187
[0201] [0202] The oligomeric compound of embodiment 185, wherein
each B nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 188
[0202] [0203] The oligomeric compound of embodiment 187, wherein
each B nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 189
[0203] [0204] The oligomeric compound of any of embodiments
176-178, wherein each B nucleoside comprises a bicyclic sugar
moiety.
Embodiment 190
[0204] [0205] The oligomeric compound of embodiment 189, wherein
each B nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 191
[0205] [0206] The oligomeric compound of any of embodiments
176-190, wherein each A comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3, and each B comprises a bicyclic sugar
moiety selected from among: LNA and cEt.
Embodiment 192
[0206] [0207] The oligomeric compound of embodiment 191, wherein
each A comprises O(CH.sub.2).sub.2--OCH.sub.3 and each B comprises
cEt.
Embodiment 193
[0207] [0208] The oligomeric compound of any of embodiments
176-192, wherein each W nucleoside comprises a 2'-substituted sugar
moiety.
Embodiment 194
[0208] [0209] The oligomeric compound of embodiment 193, wherein at
least one central region nucleoside comprises a 2'-substituted
sugar moiety comprising a 2' substituent selected from among:
halogen, optionally substituted allyl, optionally substituted
amino, azido, optionally substituted SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; optionally substituted
O-alkylenyl-O-alkyl, optionally substituted alkynyl, optionally
substituted alkaryl, optionally substituted aralkyl, optionally
substituted O-alkaryl, optionally substituted O-aralkyl,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl; wherein each
optionally substituted group is optionally substituted with a
substituent group independently selected from among: hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
Embodiment 195
[0209] [0210] The oligomeric compound of embodiment 193, wherein
each W nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: a halogen,
OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3, OCH.sub.2CF.sub.3,
OCH.sub.2--CH.dbd.CH.sub.2, O(CH.sub.2).sub.2--OCH.sub.3,
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2.
Embodiment 196
[0210] [0211] The oligomeric compound of embodiment 195, wherein
each W nucleoside comprises a 2'-substituted sugar moiety
comprising a 2'-substituent selected from among: F, OCH.sub.3,
O(CH.sub.2).sub.2--OCH.sub.3.
Embodiment 197
[0211] [0212] The oligomeric compound of any of embodiments
176-192, wherein each W nucleoside comprises a bicyclic sugar
moiety.
Embodiment 198
[0212] [0213] The oligomeric compound of embodiment 197, wherein
each W nucleoside comprises a bicyclic sugar moiety selected from
among: cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA.
Embodiment 199
[0213] [0214] The oligomeric compound of any of embodiments
176-192, wherein each W comprises a modified nucleobase.
Embodiment 200
[0214] [0215] The oligomeric compound of embodiment 199, wherein
each W comprises a modified nucleobase selected from among a 2-thio
pyrimidine and a 5-propyne pyrimidine.
Embodiment 201
[0215] [0216] The oligomeric compound of embodiment 200, wherein
each W comprises 2-thio-thymidine.
Embodiment 202
[0216] [0217] The oligomeric compound of embodiment 176-192,
wherein each W comprises an F-HNA sugar moiety.
Embodiment 203
[0217] [0218] The oligomeric compound of embodiment 202, wherein
each W nucleoside comprises an unmodified 2'-deoxyfuranose sugar
moiety.
Embodiment 204
[0218] [0219] The oligomeric compound of embodiments 1-203, wherein
the 5'-region has a motif selected from among: AB, ABB, AAA, BBB,
BBBAA, AAB, BAA, BBAA, AABB, AAAB, ABBW, ABBWW, ABBB, ABBBB, ABAB,
ABABAB, ABABBB, ABABAA, AAABB, AAAABB, AABB, AAAAB, AABBB, ABBBB,
BBBBB, AAABW, AAAAA, and BBBBAA; [0220] wherein the 3'-region has a
motif selected from among: BBA, AAB, AAA, BBB, BBAA, AABB, WBBA,
WAAB, BBBA, BBBBA, BBBB, BBBBBA, ABBBBB, BBAAA, AABBB, BBBAA,
BBBBA, BBBBB, BABA, AAAAA, BBAAAA, AABBBB, BAAAA, and ABBBB; [0221]
wherein the central region has a nucleoside motif selected from
among: DDDDDD, DDDDDDD, DDDDDDDD, DDDDDDDDD, DDDDDDDDDD, DXDDDDDDD,
DDXDDDDDD, DDDXDDDDD, DDDDXDDDD, DDDDDXDDD, DDDDDDXDD, DDDDDDDXD,
DXXDDDDDD, DDDDDDXXD, DDXXDDDDD, DDDXXDDDD, DDDDXXDDD, DDDDDXXDD,
DXDDDDDXD, DXDDDDXDD, DXDDDXDDD, DXDDXDDDD, DXDXDDDDD, DDXDDDDXD,
DDXDDDXDD, DDXDDXDDD, DDXDXDDDD, DDDXDDDXD, DDDXDDXDD, DDDXDXDDD,
DDDDXDDXD, DDDDXDXDD, and DDDDDXDXD, DDDDDDDD, DXDDDDDD, DDXDDDDD,
DDDXDDDD, DDDDXDDD, DDDDDXDD, DDDDDDXD, DXDDDDXD, DXDDDXDD,
DXDDXDDD, DXDXDDDD, DXXDDDDD, DDXXDDDD, DDXDXDDD, DDXDDXDD,
DXDDDDXD, DDDXXDDD, DDDXDXDD, DDDXDDXD, DDDDXXDD, DDDDXDXD, and
DDDDDXXD, DXDDDDD, DDXDDDD, DDDXDDD, DDDDXDD, DDDDDXD, DXDDDXD,
DXDDXDD, DXDXDDD, DXXDDDD, DDXXDDD, DDXDXDD, DDXDDXD, DDDXXDD,
DDDXDXD, and DDDDXXD, DXDDDD, DDXDDD, DDDXDD, DDDDXD, DXXDDD,
DXDXDD, DXDDXD, DDXXDD, DDXDXD, and DDDXXD; and [0222] wherein each
A is a modified nucleoside of a first type, each B is a modified
nucleoside of a second type, each W is a modified nucleoside of a
first type, a second type, or a third type, each D is an unmodified
deoxynucleoside, and each X is a modified nucleoside or a modified
nucleobase.
Embodiment 205
[0222] [0223] The oligomeric compound of embodiment 204, wherein
the 5'-region has a motif selected from among: [0224] AB, ABB, AAA,
BBB, BBBAA, AAB, BAA, BBAA, AABB, ABBW, ABBWW, ABBB, ABBBB, ABAB,
ABABAB, ABABBB, ABABAA, AAABB, AAAABB, AABB, AAAAB, AABBB, ABBBB,
BBBBB, AAABW, and BBBBAA; and wherein the 3'-region has a BBA
motif.
Embodiment 206
[0224] [0225] The oligomeric compound of embodiment 204 or 205,
wherein one of A or B comprises a bicyclic sugar moiety, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a
2-thio-thymidine nucleobase.
Embodiment 207
[0225] [0226] The oligomeric compound of embodiment 204 or 205,
wherein one of A or B comprises a bicyclic sugar moiety, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises FHNA.
Embodiment 208
[0226] [0227] The oligomeric compound of embodiment 204 or 205,
wherein one of A or B comprises cEt, another of A or B comprises a
2'-modified sugar moiety, and W comprises a 2-thio-thymidine
nucleobase.
Embodiment 209
[0227] [0228] The oligomeric compound of embodiment 204 or 205,
wherein one of A or B comprises cEt, another of A or B comprises a
2'-modified sugar moiety, and W comprises FHNA.
Embodiment 210
[0228] [0229] The oligomeric compound of embodiment 204 or 205,
wherein each A comprises MOE, each B comprises cEt, and each W is
selected from among cEt or FHNA.
Embodiment 211
[0229] [0230] The oligomeric compound of embodiment 204 or 205,
wherein each W comprises cEt.
Embodiment 212
[0230] [0231] The oligomeric compound of embodiment 204 or 205,
wherein each W comprises 2-thio-thymidine.
Embodiment 213
[0231] [0232] The oligomeric compound of embodiment 204 or 205,
wherein each W comprises FHNA.
Embodiment 214
[0232] [0233] The oligomeric compound of any of embodiments 1-213
comprising at least one modified internucleoside linkage.
Embodiment 215
[0233] [0234] The oligomeric compound of embodiment 214, wherein
each internucleoside linkage is a modified internucleoside
linkage.
Embodiment 216
[0234] [0235] The oligomeric compound of embodiment 214 or 215
comprising at least one phosphorothioate internucleoside
linkage.
Embodiment 217
[0235] [0236] The oligomeric compound of any of embodiments 214 or
215 comprising at least one methylphosphonate internucleoside
linkage.
Embodiment 218
[0236] [0237] The oligomeric compound of any of embodiments 214 or
215 comprising one methylphosphonate internucleoside linkage.
Embodiment 219
[0237] [0238] The oligomeric compound of any of embodiments 214 or
215 comprising two methylphosphonate internucleoside linkages.
Embodiment 220
[0238] [0239] The oligomeric compound of embodiment 217, wherein at
least one of the 3.sup.rd, 4.sup.th, 5.sup.th, 6.sup.th and/or,
7.sup.th internucleoside from the 5'-end is a methylphosphonate
internucleoside linkage.
Embodiment 221
[0239] [0240] The oligomeric compound of embodiment 217, wherein at
least one of the 3.sup.rd, 4.sup.th, 5.sup.th, 6.sup.th and/or
7.sup.th internucleoside from the 3'-end is a methylphosphonate
internucleoside linkage.
Embodiment 222
[0240] [0241] The oligomeric compound of embodiment 217, wherein at
least one of the 3.sup.rd, 4.sup.th, 5.sup.th, 6.sup.th, 7.sup.th,
8.sup.th, 9.sup.th, 10.sup.th, 11.sup.th, and/or 12.sup.th
internucleoside from the 5'-end is a methylphosphonate
internucleoside linkage, and wherein at least one of the 3.sup.rd,
4.sup.th, 5.sup.th, 6.sup.th, 7.sup.th, 8.sup.th, 9.sup.th,
10.sup.th, 11.sup.th, and/or 12.sup.th internucleoside from the
5'-end is a modified nucleoside.
Embodiment 223
[0241] [0242] The oligomeric compound of embodiment 217, wherein at
least one of the 3.sup.rd, 4.sup.th, 5.sup.th, 6.sup.th, 7.sup.th,
8.sup.th, 9.sup.th, 10.sup.th, 11.sup.th, and/or 12.sup.th
internucleoside from the 3'-end is a methylphosphonate
internucleoside linkage, and wherein at least one of the 3.sup.rd,
4.sup.th, 5.sup.th, 6.sup.th, 7.sup.th, 8.sup.th, 9.sup.th,
10.sup.th, 11.sup.th, and/or 12.sup.th internucleoside from the
3'-end is a modified nucleoside.
Embodiment 224
[0242] [0243] The oligomeric compound of any of embodiments 1-223
comprising at least one conjugate group.
Embodiment 225
[0243] [0244] The oligomeric compound of embodiment 1-223, wherein
the conjugate group consists of a conjugate.
Embodiment 226
[0244] [0245] The oligomeric compound of embodiment 225, wherein
the conjugate group consists of a conjugate and a conjugate
linker.
Embodiment 227
[0245] [0246] The oligomeric compound of any of embodiments 1-226,
wherein the nucleobase sequence of the modified oligonucleotide is
100% complementary to the nucleobase sequence of the target region
of the target nucleic acid.
Embodiment 228
[0246] [0247] The oligomeric compound of any of embodiments 1-226,
wherein the nucleobase sequence of the modified oligonucleotide
contains one mismatch relative to the nucleobase sequence of the
target region of the target nucleic acid.
Embodiment 229
[0247] [0248] The oligomeric compound of any of embodiments 1-226,
wherein the nucleobase sequence of the modified oligonucleotide
contains two mismatches relative to the nucleobase sequence of the
target region of the target nucleic acid.
Embodiment 230
[0248] [0249] The oligomeric compound of any of embodiments 1-226,
wherein the nucleobase sequence of the modified oligonucleotide
comprises a hybridizing region and at least one non-targeting
region, wherein the nucleobase sequence of the hybridizing region
is complementary to the nucleobase sequence of the target region of
the target nucleic acid.
Embodiment 231
[0249] [0250] The oligomeric compound of embodiment 230, wherein
the nucleobase sequence of the hybridizing region is 100%
complementary to the nucleobase sequence of the target region of
the target nucleic acid.
Embodiment 232
[0250] [0251] The oligomeric compound of embodiment 230, wherein
the nucleobase sequence of the hybridizing region contains one
mismatched relative to the nucleobase sequence of the target region
of the target nucleic acid.
Embodiment 233
[0251] [0252] The oligomeric compound of any of embodiments
230-232, wherein the nucleobase sequence of at least one
non-targeting region is complementary to a portion of the
hybridizing region of the modified oligonucleotide.
Embodiment 234
[0252] [0253] The oligomeric compound of embodiment 233, wherein
the nucleobase sequence of at least one non-targeting region is
100% complementary to a portion of the hybridizing region of the
modified oligonucleotide.
Embodiment 235
[0253] [0254] The oligomeric compound of embodiment 1-234 wherein
the nucleobase sequence of the modified oligonucleotide comprises
two non-targeting regions flanking a central hybridizing
region.
Embodiment 236
[0254] [0255] The oligomeric compound of embodiment 235, wherein
the two non-targeting regions are complementary to one another.
Embodiment 237
[0255] [0256] The oligomeric compound of embodiment 236, wherein
the two non-targeting regions are 100% complementary to one
another.
Embodiment 238
[0256] [0257] The oligomeric compound of any of embodiments 2-237,
wherein the nucleobase sequence of the modified oligonucleotide
aligns with the nucleobase of the target region of the target
nucleic acid such that a distinguishing nucleobase of the target
region of the target nucleic acid aligns with a target-selective
nucleoside within the central region of the modified
oligonucleotide.
Embodiment 239
[0257] [0258] The oligomeric compound of any of embodiments 3-237,
wherein the nucleobase sequence of the modified oligonucleotide
aligns with the nucleobase of the target region of the target
nucleic acid such that the single distinguishing nucleobase of the
target region of the target nucleic acid aligns with a
target-selective nucleoside within the central region of the
modified oligonucleotide.
Embodiment 240
[0258] [0259] The oligomeric compound of embodiment 238 or 239,
wherein the target-selective nucleoside is the 5'-most nucleoside
of the central region.
Embodiment 241
[0259] [0260] The oligomeric compound of embodiment 238 or 239,
wherein the target-selective nucleoside is the 2.sup.nd nucleoside
from the 5'-end of the central region.
Embodiment 242
[0260] [0261] The oligomeric compound of embodiment 238 or 239,
wherein the target-selective nucleoside is at the 3.sup.rd
nucleoside from the 5'-end of the central region.
Embodiment 243
[0261] [0262] The oligomeric compound of embodiment 238 or 239,
wherein the target-selective nucleoside is at the 5.sup.th
nucleoside from the 5'-end of the central region.
Embodiment 244
[0262] [0263] The oligomeric compound of embodiment 238 or 239,
wherein the target-selective nucleoside is at the 7.sup.th
nucleoside from the 5'-end of the central region.
Embodiment 245
[0263] [0264] The oligomeric compound of embodiment 238 or 239,
wherein the target-selective nucleoside is at the 9.sup.th
nucleoside from the 5'-end of the central region.
Embodiment 246
[0264] [0265] The oligomeric compound of any of embodiments 238 or
239, or 241-245, wherein the target-selective nucleoside is at the
2.sup.nd nucleoside from the 3'-end of the central region.
Embodiment 247
[0265] [0266] The oligomeric compound of any of embodiments 238 or
239, or 241-245, wherein the target-selective nucleoside is at the
5.sup.th nucleoside from the 3'-end of the central region.
Embodiment 248
[0266] [0267] The oligomeric compound of any of embodiments 1-247,
wherein target-selective nucleoside is an unmodified
deoxynucleoside.
Embodiment 249
[0267] [0268] The oligomeric compound of any of embodiments 1-247,
wherein target-selective nucleoside is a modified nucleoside.
Embodiment 250
[0268] [0269] The oligomeric compound of embodiment 249, wherein
the target-selective nucleoside is a sugar modified nucleoside.
Embodiment 251
[0269] [0270] The oligomeric compound of embodiment 250, wherein
the target-selective nucleoside comprises a sugar modification
selected from among: 2'-MOE, 2'-F, 2'-(ara)-F, HNA, FHNA, cEt, and
.alpha.-L-LNA.
Embodiment 252
[0270] [0271] The oligomeric compound of any of embodiments 1-251,
wherein the target-selective nucleoside comprises a nucleobase
modification.
Embodiment 253
[0271] [0272] The oligomeric compound of embodiment 252, wherein
the modified nucleobase is selected from among: a 2-thio pyrimidine
and a 5-propyne pyrimidine.
Embodiment 254
[0272] [0273] The oligomeric compound of any of embodiments 1-253,
wherein the oligomeric compound is an antisense compound.
Embodiment 255
[0273] [0274] The oligomeric compound of embodiment 254, wherein
the oligomeric compound selectively reduces expression of the
target relative to the non-target.
Embodiment 256
[0274] [0275] The oligomeric compound of embodiment 255, wherein
the oligomeric compound reduces expression of target at least
two-fold more than it reduces expression of the non-target.
Embodiment 257
[0275] [0276] The oligomeric compound of embodiment 256, having an
EC.sub.50 for reduction of expression of target that is at least
least two-fold lower than its EC.sub.50 for reduction of expression
of the non-target, when measured in cells.
Embodiment 258
[0276] [0277] The oligomeric compound of embodiment 256, having an
ED.sub.50 for reduction of expression of target that is at least
least two-fold lower than its ED.sub.50 for reduction of expression
of the non-target, when measured in an animal.
Embodiment 259
[0277] [0278] The oligomeric compound of embodiments 1-10, having
an E-E-E-K-K-(D).sub.7-E-E-K motif, wherein each E is a 2'-MOE
nucleoside and each K is a cEt nucleoside.
Embodiment 260
[0278] [0279] A method comprising contacting a cell with an
oligomeric compound of any of embodiments 1-259.
Embodiment 261
[0279] [0280] The method of embodiment 260, wherein the cell is in
vitro.
Embodiment 262
[0280] [0281] The method of embodiment 260, wherein the cell is in
an animal.
Embodiment 263
[0281] [0282] The method of embodiment 262, wherein the animal is a
human.
Embodiment 264
[0282] [0283] The method of embodiment 263, wherein the animal is a
mouse.
Embodiment 265
[0283] [0284] A pharmaceutical composition comprising an oligomeric
compound of any of embodiments 1-259 and a pharmaceutically
acceptable carrier or diluent.
Embodiment 266
[0284] [0285] A method of administering a pharmaceutical
composition of embodiment 265 to an animal.
Embodiment 267
[0285] [0286] The method of embodiment 266, wherein the animal is a
human.
Embodiment 268
[0286] [0287] The method of embodiment 266, wherein the animal is a
mouse.
Embodiment 269
[0287] [0288] Use of an oligomeric compound of any of embodiments
1-259 for the preparation of a medicament for the treatment or
amelioration of Alzheimer's disease, Creutzfeldt-Jakob disease,
fatal familial insomnia, Alexander disease, Parkinson's disease,
amyotrophic lateral sclerosis, dentato-rubral and pallido-luysian
atrophy DRPA, spino-cerebellar ataxia, Torsion dystonia,
cardiomyopathy, chronic obstructive pulmonary disease (COPD), liver
disease, hepatocellular carcinoma, systemic lupus erythematosus,
hypercholesterolemia, breast cancer, asthma, Type 1 diabetes,
Rheumatoid arthritis, Graves disease, SLE, spinal and bulbar
muscular atrophy, Kennedy's disease, progressive childhood
posterior subcapsular cataracts, cholesterol gallstone disease,
arthrosclerosis, cardiovascular disease, primary hypercalciuria,
alpha-thallasemia, obsessive compulsive disorder, Anxiety, comorbid
depression, congenital visual defects, hypertension, metabolic
syndrome, prostate cancer, congential myasthenic syndrome,
peripheral arterial disease, atrial fibrillation, sporadic
pheochromocytoma, congenital malformations, Machado-Joseph disease,
Huntington's disease, and Autosomal Dominant Retinitis Pigmentosa
disease.
Embodiment 270
[0288] [0289] A method of ameliorating a symptom of Alzheimer's
disease, Creutzfeldt-Jakob disease, fatal familial insomnia,
Alexander disease, Parkinson's disease, amyotrophic lateral
sclerosis, dentato-rubral and pallido-luysian atrophy DRPA,
spino-cerebellar ataxia, Torsion dystonia, cardiomyopathy, chronic
obstructive pulmonary disease (COPD), liver disease, hepatocellular
carcinoma, systemic lupus erythematosus, hypercholesterolemia,
breast cancer, asthma, Type 1 diabetes, Rheumatoid arthritis,
Graves disease, SLE, spinal and bulbar muscular atrophy, Kennedy's
disease, progressive childhood posterior subcapsular cataracts,
cholesterol gallstone disease, arthrosclerosis, cardiovascular
disease, primary hypercalciuria, alpha-thallasemia, obsessive
compulsive disorder, Anxiety, comorbid depression, congenital
visual defects, hypertension, metabolic syndrome, prostate cancer,
congential myasthenic syndrome, peripheral arterial disease, atrial
fibrillation, sporadic pheochromocytoma, congenital malformations,
Machado-Joseph disease, Huntington's disease, and Autosomal
Dominant Retinitis Pigmentosa disease, comprising administering an
oligomeric compound of any of embodiments 1-259 to an animal in
need thereof.
Embodiment 271
[0289] [0290] The method of embodiment 270, wherein the animal is a
human.
Embodiment 272
[0290] [0291] The method of embodiment 270, wherein the animal is a
mouse.
[0292] In certain embodiments, including but not limited to any of
the above numbered embodiments, oligomeric compounds including
oligonucleotides described herein are capable of modulating
expression of a target RNA. In certain embodiments, the target RNA
is associated with a disease or disorder, or encodes a protein that
is associated with a disease or disorder. In certain embodiments,
the oligomeric compounds or oligonucleotides provided herein
modulate the expression of function of such RNA to alleviate one or
more symptom of the disease or disorder.
[0293] In certain embodiments, oligomeric compounds including
oligonucleotides describe herein are useful in vitro. In certain
embodiments such oligomeric compounds are used in diagnostics
and/or for target validation experiments.
DETAILED DESCRIPTION OF THE INVENTION
[0294] It is to be understood that both the foregoing general
description and the following detailed description are exemplary
and explanatory only and are not restrictive of the invention, as
claimed. Herein, the use of the singular includes the plural unless
specifically stated otherwise. As used herein, the use of "or"
means "and/or" unless stated otherwise. Furthermore, the use of the
term "including" as well as other forms, such as "includes" and
"included", is not limiting. Also, terms such as "element" or
"component" encompass both elements and components comprising one
unit and elements and components that comprise more than one
subunit, unless specifically stated otherwise.
[0295] The section headings used herein are for organizational
purposes only and are not to be construed as limiting the subject
matter described. All documents, or portions of documents, cited in
this application, including, but not limited to, patents, patent
applications, articles, books, and treatises, are hereby expressly
incorporated by reference in their entirety for any purpose.
A. DEFINITIONS
[0296] Unless specific definitions are provided, the nomenclature
used in connection with, and the procedures and techniques of,
analytical chemistry, synthetic organic chemistry, and medicinal
and pharmaceutical chemistry described herein are those well known
and commonly used in the art. Standard techniques may be used for
chemical synthesis, and chemical analysis. Certain such techniques
and procedures may be found for example in "Carbohydrate
Modifications in Antisense Research" Edited by Sangvi and Cook,
American Chemical Society, Washington D.C., 1994; "Remington's
Pharmaceutical Sciences," Mack Publishing Co., Easton, Pa.,
21.sup.st edition, 2005; and "Antisense Drug Technology,
Principles, Strategies, and Applications" Edited by Stanley T.
Crooke, CRC Press, Boca Raton, Fla.; and Sambrook et al.,
"Molecular Cloning, A laboratory Manual," 2.sup.nd Edition, Cold
Spring Harbor Laboratory Press, 1989, which are hereby incorporated
by reference for any purpose. Where permitted, all patents,
applications, published applications and other publications and
other data referred to throughout in the disclosure are
incorporated by reference herein in their entirety.
[0297] Unless otherwise indicated, the following terms have the
following meanings:
[0298] As used herein, "nucleoside" means a compound comprising a
nucleobase moiety and a sugar moiety. Nucleosides include, but are
not limited to, naturally occurring nucleosides (as found in DNA
and RNA) and modified nucleosides. Nucleosides may be linked to a
phosphate moiety.
[0299] As used herein, "chemical modification" means a chemical
difference in a compound when compared to a naturally occurring
counterpart. Chemical modifications of oligonucleotides include
nucleoside modifications (including sugar moiety modifications and
nucleobase modifications) and internucleoside linkage
modifications. In reference to an oligonucleotide, chemical
modification does not include differences only in nucleobase
sequence.
[0300] As used herein, "furanosyl" means a structure comprising a
5-membered ring comprising four carbon atoms and one oxygen
atom.
[0301] As used herein, "naturally occurring sugar moiety" means a
ribofuranosyl as found in naturally occurring RNA or a
deoxyribofuranosyl as found in naturally occurring DNA.
[0302] As used herein, "sugar moiety" means a naturally occurring
sugar moiety or a modified sugar moiety of a nucleoside.
[0303] As used herein, "modified sugar moiety" means a substituted
sugar moiety or a sugar surrogate.
[0304] As used herein, "substituted sugar moiety" means a furanosyl
that is not a naturally occurring sugar moiety. Substituted sugar
moieties include, but are not limited to furanosyls comprising
substituents at the 2'-position, the 3'-position, the 5'-position
and/or the 4'-position. Certain substituted sugar moieties are
bicyclic sugar moieties.
[0305] As used herein, "2'-substituted sugar moiety" means a
furanosyl comprising a substituent at the 2'-position other than H
or OH. Unless otherwise indicated, a 2'-substituted sugar moiety is
not a bicyclic sugar moiety (i.e., the 2'-substituent of a
2'-substituted sugar moiety does not form a bridge to another atom
of the furanosyl ring.
[0306] As used herein, "MOE" means
--OCH.sub.2CH.sub.2OCH.sub.3.
[0307] As used herein, "2'-F nucleoside" refers to a nucleoside
comprising a sugar comprising fluorine at the 2' position. Unless
otherwise indicated, the fluorine in a 2'-F nucleoside is in the
ribo position (replacing the OH of a natural ribose).
[0308] As used herein, "2'-(ara)-F" refers to a 2'-F substituted
nucleoside, wherein the fluoro group is in the arabino
position.
##STR00001##
[0309] As used herein the term "sugar surrogate" means a structure
that does not comprise a furanosyl and that is capable of replacing
the naturally occurring sugar moiety of a nucleoside, such that the
resulting nucleoside sub-units are capable of linking together
and/or linking to other nucleosides to form an oligomeric compound
which is capable of hybridizing to a complementary oligomeric
compound. Such structures include rings comprising a different
number of atoms than furanosyl (e.g., 4, 6, or 7-membered rings);
replacement of the oxygen of a furanosyl with a non-oxygen atom
(e.g., carbon, sulfur, or nitrogen); or both a change in the number
of atoms and a replacement of the oxygen. Such structures may also
comprise substitutions corresponding to those described for
substituted sugar moieties (e.g., 6-membered carbocyclic bicyclic
sugar surrogates optionally comprising additional substituents).
Sugar surrogates also include more complex sugar replacements
(e.g., the non-ring systems of peptide nucleic acid). Sugar
surrogates include without limitation morpholinos, cyclohexenyls
and cyclohexitols.
[0310] As used herein, "bicyclic sugar moiety" means a modified
sugar moiety comprising a 4 to 7 membered ring (including but not
limited to a furanosyl) comprising a bridge connecting two atoms of
the 4 to 7 membered ring to form a second ring, resulting in a
bicyclic structure. In certain embodiments, the 4 to 7 membered
ring is a sugar ring. In certain embodiments the 4 to 7 membered
ring is a furanosyl. In certain such embodiments, the bridge
connects the 2'-carbon and the 4'-carbon of the furanosyl.
[0311] As used herein, "nucleotide" means a nucleoside further
comprising a phosphate linking group. As used herein, "linked
nucleosides" may or may not be linked by phosphate linkages and
thus includes, but is not limited to "linked nucleotides." As used
herein, "linked nucleosides" are nucleosides that are connected in
a continuous sequence (i.e. no additional nucleosides are present
between those that are linked).
[0312] As used herein, "nucleobase" means a group of atoms that can
be linked to a sugar moiety to create a nucleoside that is capable
of incorporation into an oligonucleotide, and wherein the group of
atoms is capable of bonding with a complementary naturally
occurring nucleobase of another oligonucleotide or nucleic acid.
Nucleobases may be naturally occurring or may be modified.
[0313] As used herein the terms, "unmodified nucleobase" or
"naturally occurring nucleobase" means the naturally occurring
heterocyclic nucleobases of RNA or DNA: the purine bases adenine
(A) and guanine (G), and the pyrimidine bases thymine (T), cytosine
(C) (including 5-methyl C), and uracil (U).
[0314] As used herein, "modified nucleobase" means any nucleobase
that is not a naturally occurring nucleobase.
[0315] As used herein, "modified nucleoside" means a nucleoside
comprising at least one chemical modification compared to naturally
occurring RNA or DNA nucleosides. Modified nucleosides comprise a
modified sugar moiety and/or a modified nucleobase.
[0316] As used herein, "bicyclic nucleoside" or "BNA" means a
nucleoside comprising a bicyclic sugar moiety.
[0317] As used herein, "constrained ethyl nucleoside" or "cEt"
means a nucleoside comprising a bicyclic sugar moiety comprising a
4'-CH(CH.sub.3)--O-2' bridge.
[0318] As used herein, "locked nucleic acid nucleoside" or "LNA"
means a nucleoside comprising a bicyclic sugar moiety comprising a
4'-CH.sub.2--O-2' bridge.
[0319] As used herein, "2'-substituted nucleoside" means a
nucleoside comprising a substituent at the 2'-position other than H
or OH. Unless otherwise indicated, a 2'-substituted nucleoside is
not a bicyclic nucleoside.
[0320] As used herein, "2'-deoxynucleoside" means a nucleoside
comprising 2'-H furanosyl sugar moiety, as found in naturally
occurring deoxyribonucleosides (DNA). In certain embodiments, a
2'-deoxynucleoside may comprise a modified nucleobase or may
comprise an RNA nucleobase (e.g., uracil).
[0321] As used herein, "RNA-like nucleoside" means a modified
nucleoside that adopts a northern configuration and functions like
RNA when incorporated into an oligonucleotide. RNA-like nucleosides
include, but are not limited to 3'-endo furanosyl nucleosides and
RNA surrogates.
[0322] As used herein, "3'-endo-furanosyl nucleoside" means an
RNA-like nucleoside that comprises a substituted sugar moiety that
has a 3'-endo conformation. 3'-endo-furanosyl nucleosides include,
but are not limited to: 2'-MOE, 2'-F, 2'-OMe, LNA, ENA, and cEt
nucleosides.
[0323] As used herein, "RNA-surrogate nucleoside" means an RNA-like
nucleoside that does not comprise a furanosyl. RNA-surrogate
nucleosides include, but are not limited to hexitols and
cyclopentanes.
[0324] As used herein, "oligonucleotide" means a compound
comprising a plurality of linked nucleosides. In certain
embodiments, an oligonucleotide comprises one or more unmodified
ribonucleosides (RNA) and/or unmodified deoxyribonucleosides (DNA)
and/or one or more modified nucleosides.
[0325] As used herein "oligonucleoside" means an oligonucleotide in
which none of the internucleoside linkages contains a phosphorus
atom. As used herein, oligonucleotides include
oligonucleosides.
[0326] As used herein, "modified oligonucleotide" means an
oligonucleotide comprising at least one modified nucleoside and/or
at least one modified internucleoside linkage.
[0327] As used herein "internucleoside linkage" means a covalent
linkage between adjacent nucleosides in an oligonucleotide.
[0328] As used herein "naturally occurring internucleoside linkage"
means a 3' to 5' phosphodiester linkage.
[0329] As used herein, "modified internucleoside linkage" means any
internucleoside linkage other than a naturally occurring
internucleoside linkage.
[0330] As used herein, "oligomeric compound" means a polymeric
structure comprising two or more sub-structures. In certain
embodiments, an oligomeric compound comprises an oligonucleotide.
In certain embodiments, an oligomeric compound comprises one or
more conjugate groups and/or terminal groups. In certain
embodiments, an oligomeric compound consists of an
oligonucleotide.
[0331] As used herein, "terminal group" means one or more atom
attached to either, or both, the 3' end or the 5' end of an
oligonucleotide. In certain embodiments a terminal group is a
conjugate group. In certain embodiments, a terminal group comprises
one or more terminal group nucleosides.
[0332] As used herein, "conjugate" means an atom or group of atoms
bound to an oligonucleotide or oligomeric compound. In general,
conjugate groups modify one or more properties of the compound to
which they are attached, including, but not limited to
pharmacodynamic, pharmacokinetic, binding, absorption, cellular
distribution, cellular uptake, charge and/or clearance
properties.
[0333] As used herein, "conjugate linking group" means any atom or
group of atoms used to attach a conjugate to an oligonucleotide or
oligomeric compound.
[0334] As used herein, "antisense compound" means a compound
comprising or consisting of an oligonucleotide at least a portion
of which is complementary to a target nucleic acid to which it is
capable of hybridizing, resulting in at least one antisense
activity.
[0335] As used herein, "antisense activity" means any detectable
and/or measurable change attributable to the hybridization of an
antisense compound to its target nucleic acid.
[0336] As used herein, "detecting" or "measuring" means that a test
or assay for detecting or measuring is performed. Such detection
and/or measuring may result in a value of zero. Thus, if a test for
detection or measuring results in a finding of no activity
(activity of zero), the step of detecting or measuring the activity
has nevertheless been performed.
[0337] As used herein, "detectable and/or measurable activity"
means a measurable activity that is not zero.
[0338] As used herein, "essentially unchanged" means little or no
change in a particular parameter, particularly relative to another
parameter which changes much more. In certain embodiments, a
parameter is essentially unchanged when it changes less than 5%. In
certain embodiments, a parameter is essentially unchanged if it
changes less than two-fold while another parameter changes at least
ten-fold. For example, in certain embodiments, an antisense
activity is a change in the amount of a target nucleic acid. In
certain such embodiments, the amount of a non-target nucleic acid
is essentially unchanged if it changes much less than the target
nucleic acid does, but the change need not be zero.
[0339] As used herein, "expression" means the process by which a
gene ultimately results in a protein. Expression includes, but is
not limited to, transcription, post-transcriptional modification
(e.g., splicing, polyadenlyation, addition of 5'-cap), and
translation.
[0340] As used herein, "target nucleic acid" means a nucleic acid
molecule to which an antisense compound is intended to
hybridize.
[0341] As used herein, "non-target nucleic acid" means a nucleic
acid molecule to which hybridization of an antisense compound is
not intended or desired. In certain embodiments, antisense
compounds do hybridize to a non-target, due to homology between the
target (intended) and non-target (un-intended).
[0342] As used herein, "mRNA" means an RNA molecule that encodes a
protein.
[0343] As used herein, "pre-mRNA" means an RNA transcript that has
not been fully processed into mRNA. Pre-RNA includes one or more
intron.
[0344] As used herein, "object RNA" means an RNA molecule other
than a target RNA, the amount, activity, splicing, and/or function
of which is modulated, either directly or indirectly, by a target
nucleic acid. In certain embodiments, a target nucleic acid
modulates splicing of an object RNA. In certain such embodiments,
an antisense compound modulates the amount or activity of the
target nucleic acid, resulting in a change in the splicing of an
object RNA and ultimately resulting in a change in the activity or
function of the object RNA.
[0345] As used herein, "microRNA" means a naturally occurring,
small, non-coding RNA that represses gene expression of at least
one mRNA. In certain embodiments, a microRNA represses gene
expression by binding to a target site within a 3' untranslated
region of an mRNA. In certain embodiments, a microRNA has a
nucleobase sequence as set forth in miRBase, a database of
published microRNA sequences found at
http://microrna.sanger.ac.uk/sequences/. In certain embodiments, a
microRNA has a nucleobase sequence as set forth in miRBase version
12.0 released September 2008, which is herein incorporated by
reference in its entirety.
[0346] As used herein, "microRNA mimic" means an oligomeric
compound having a sequence that is at least partially identical to
that of a microRNA. In certain embodiments, a microRNA mimic
comprises the microRNA seed region of a microRNA. In certain
embodiments, a microRNA mimic modulates translation of more than
one target nucleic acids. In certain embodiments, a microRNA mimic
is double-stranded.
[0347] As used herein, "differentiating nucleobase" means a
nucleobase that differs between two nucleic acids. In certain
instances, a target region of a target nucleic acid differs by 1-4
nucleobases from a non-target nucleic acid. Each of those
differences is referred to as a differentiating nucleobase. In
certain instances, a differentiating nucleobase is a
single-nucleotide polymorphism.
[0348] As used herein, "target-selective nucleoside" means a
nucleoside of an antisense compound that corresponds to a
differentiating nucleobase of a target nucleic acid.
[0349] As used herein, "allele" means one of a pair of copies of a
gene existing at a particular locus or marker on a specific
chromosome, or one member of a pair of nucleobases existing at a
particular locus or marker on a specific chromosome, or one member
of a pair of nucleobase sequences existing at a particular locus or
marker on a specific chromosome. For a diploid organism or cell or
for autosomal chromosomes, each allelic pair will normally occupy
corresponding positions (loci) on a pair of homologous chromosomes,
one inherited from the mother and one inherited from the father. If
these alleles are identical, the organism or cell is said to be
"homozygous" for that allele; if they differ, the organism or cell
is said to be "heterozygous" for that allele. "Wild-type allele"
refers to the genotype typically not associated with disease or
dysfunction of the gene product. "Mutant allele" refers to the
genotype associated with disease or dysfunction of the gene
product.
[0350] As used herein, "allelic variant" means a particular
identity of an allele, where more than one identity occurs. For
example, an allelic variant may refer to either the mutant allele
or the wild-type allele.
[0351] As used herein, "single nucleotide polymorphism" or "SNP"
means a single nucleotide variation between the genomes of
individuals of the same species. In some cases, a SNP may be a
single nucleotide deletion or insertion. In general, SNPs occur
relatively frequently in genomes and thus contribute to genetic
diversity. The location of a SNP is generally flanked by highly
conserved sequences. An individual may be homozygous or
heterozygous for an allele at each SNP site.
[0352] As used herein, "single nucleotide polymorphism site" or
"SNP site" refers to the nucleotides surrounding a SNP contained in
a target nucleic acid to which an antisense compound is
targeted.
[0353] As used herein, "targeting" or "targeted to" means the
association of an antisense compound to a particular target nucleic
acid molecule or a particular region of a target nucleic acid
molecule. An antisense compound targets a target nucleic acid if it
is sufficiently complementary to the target nucleic acid to allow
hybridization under physiological conditions.
[0354] As used herein, "nucleobase complementarity" or
"complementarity" when in reference to nucleobases means a
nucleobase that is capable of base pairing with another nucleobase.
For example, in DNA, adenine (A) is complementary to thymine (T).
For example, in RNA, adenine (A) is complementary to uracil (U). In
certain embodiments, complementary nucleobase means a nucleobase of
an antisense compound that is capable of base pairing with a
nucleobase of its target nucleic acid. For example, if a nucleobase
at a certain position of an antisense compound is capable of
hydrogen bonding with a nucleobase at a certain position of a
target nucleic acid, then the position of hydrogen bonding between
the oligonucleotide and the target nucleic acid is considered to be
complementary at that nucleobase pair. Nucleobases comprising
certain modifications may maintain the ability to pair with a
counterpart nucleobase and thus, are still capable of nucleobase
complementarity.
[0355] As used herein, "non-complementary" in reference to
nucleobases means a pair of nucleobases that do not form hydrogen
bonds with one another.
[0356] As used herein, "complementary" in reference to oligomeric
compounds (e.g., linked nucleosides, oligonucleotides, or nucleic
acids) means the capacity of such oligomeric compounds or regions
thereof to hybridize to another oligomeric compound or region
thereof through nucleobase complementarity under stringent
conditions. Complementary oligomeric compounds need not have
nucleobase complementarity at each nucleoside. Rather, some
mismatches are tolerated. In certain embodiments, complementary
oligomeric compounds or regions are complementary at 70% of the
nucleobases (70% complementary). In certain embodiments,
complementary oligomeric compounds or regions are 80%
complementary. In certain embodiments, complementary oligomeric
compounds or regions are 90% complementary. In certain embodiments,
complementary oligomeric compounds or regions are 95%
complementary. In certain embodiments, complementary oligomeric
compounds or regions are 100% complementary.
[0357] As used herein, "mismatch" means a nucleobase of a first
oligomeric compound that is not capable of pairing with a
nucleobase at a corresponding position of a second oligomeric
compound, when the first and second oligomeric compound are
aligned. Either or both of the first and second oligomeric
compounds may be oligonucleotides.
[0358] As used herein, "hybridization" means the pairing of
complementary oligomeric compounds (e.g., an antisense compound and
its target nucleic acid). While not limited to a particular
mechanism, the most common mechanism of pairing involves hydrogen
bonding, which may be Watson-Crick, Hoogsteen or reversed Hoogsteen
hydrogen bonding, between complementary nucleobases.
[0359] As used herein, "specifically hybridizes" means the ability
of an oligomeric compound to hybridize to one nucleic acid site
with greater affinity than it hybridizes to another nucleic acid
site. In certain embodiments, an antisense oligonucleotide
specifically hybridizes to more than one target site.
[0360] As used herein, "fully complementary" in reference to an
oligonucleotide or portion thereof means that each nucleobase of
the oligonucleotide or portion thereof is capable of pairing with a
nucleobase of a complementary nucleic acid or contiguous portion
thereof. Thus, a fully complementary region comprises no mismatches
or unhybridized nucleobases in either strand.
[0361] As used herein, "percent complementarity" means the
percentage of nucleobases of an oligomeric compound that are
complementary to an equal-length portion of a target nucleic acid.
Percent complementarity is calculated by dividing the number of
nucleobases of the oligomeric compound that are complementary to
nucleobases at corresponding positions in the target nucleic acid
by the total length of the oligomeric compound.
[0362] As used herein, "percent identity" means the number of
nucleobases in a first nucleic acid that are the same type
(independent of chemical modification) as nucleobases at
corresponding positions in a second nucleic acid, divided by the
total number of nucleobases in the first nucleic acid.
[0363] As used herein, "modulation" means a change of amount or
quality of a molecule, function, or activity when compared to the
amount or quality of a molecule, function, or activity prior to
modulation. For example, modulation includes the change, either an
increase (stimulation or induction) or a decrease (inhibition or
reduction) in gene expression. As a further example, modulation of
expression can include a change in splice site selection of
pre-mRNA processing, resulting in a change in the absolute or
relative amount of a particular splice-variant compared to the
amount in the absence of modulation.
[0364] As used herein, "modification motif" means a pattern of
chemical modifications in an oligomeric compound or a region
thereof. Motifs may be defined by modifications at certain
nucleosides and/or at certain linking groups of an oligomeric
compound.
[0365] As used herein, "nucleoside motif" means a pattern of
nucleoside modifications in an oligomeric compound or a region
thereof. The linkages of such an oligomeric compound may be
modified or unmodified. Unless otherwise indicated, motifs herein
describing only nucleosides are intended to be nucleoside motifs.
Thus, in such instances, the linkages are not limited.
[0366] As used herein, "sugar motif" means a pattern of sugar
modifications in an oligomeric compound or a region thereof.
[0367] As used herein, "linkage motif" means a pattern of linkage
modifications in an oligomeric compound or region thereof. The
nucleosides of such an oligomeric compound may be modified or
unmodified. Unless otherwise indicated, motifs herein describing
only linkages are intended to be linkage motifs. Thus, in such
instances, the nucleosides are not limited.
[0368] As used herein, "nucleobase modification motif" means a
pattern of modifications to nucleobases along an oligonucleotide.
Unless otherwise indicated, a nucleobase modification motif is
independent of the nucleobase sequence.
[0369] As used herein, "sequence motif" means a pattern of
nucleobases arranged along an oligonucleotide or portion thereof.
Unless otherwise indicated, a sequence motif is independent of
chemical modifications and thus may have any combination of
chemical modifications, including no chemical modifications.
[0370] As used herein, "type of modification" in reference to a
nucleoside or a nucleoside of a "type" means the chemical
modification of a nucleoside and includes modified and unmodified
nucleosides. Accordingly, unless otherwise indicated, a "nucleoside
having a modification of a first type" may be an unmodified
nucleoside.
[0371] As used herein, "differently modified" mean chemical
modifications or chemical substituents that are different from one
another, including absence of modifications. Thus, for example, a
MOE nucleoside and an unmodified DNA nucleoside are "differently
modified," even though the DNA nucleoside is unmodified. Likewise,
DNA and RNA are "differently modified," even though both are
naturally-occurring unmodified nucleosides. Nucleosides that are
the same but for comprising different nucleobases are not
differently modified. For example, a nucleoside comprising a 2'-OMe
modified sugar and an unmodified adenine nucleobase and a
nucleoside comprising a 2'-OMe modified sugar and an unmodified
thymine nucleobase are not differently modified.
[0372] As used herein, "the same type of modifications" refers to
modifications that are the same as one another, including absence
of modifications. Thus, for example, two unmodified DNA nucleoside
have "the same type of modification," even though the DNA
nucleoside is unmodified. Such nucleosides having the same type
modification may comprise different nucleobases.
[0373] As used herein, "pharmaceutically acceptable carrier or
diluent" means any substance suitable for use in administering to
an animal. In certain embodiments, a pharmaceutically acceptable
carrier or diluent is sterile saline. In certain embodiments, such
sterile saline is pharmaceutical grade saline.
[0374] As used herein, "substituent" and "substituent group," means
an atom or group that replaces the atom or group of a named parent
compound. For example a substituent of a modified nucleoside is any
atom or group that differs from the atom or group found in a
naturally occurring nucleoside (e.g., a modified 2'-substituent is
any atom or group at the 2'-position of a nucleoside other than H
or OH). Substituent groups can be protected or unprotected. In
certain embodiments, compounds of the present invention have
substituents at one or at more than one position of the parent
compound. Substituents may also be further substituted with other
substituent groups and may be attached directly or via a linking
group such as an alkyl or hydrocarbyl group to a parent
compound.
[0375] Likewise, as used herein, "substituent" in reference to a
chemical functional group means an atom or group of atoms differs
from the atom or a group of atoms normally present in the named
functional group. In certain embodiments, a substituent replaces a
hydrogen atom of the functional group (e.g., in certain
embodiments, the substituent of a substituted methyl group is an
atom or group other than hydrogen which replaces one of the
hydrogen atoms of an unsubstituted methyl group). Unless otherwise
indicated, groups amenable for use as substituents include without
limitation, halogen, hydroxyl, alkyl, alkenyl, alkynyl, acyl
(--C(O)R.sub.aa), carboxyl (--C(O)O--R.sub.aa), aliphatic groups,
alicyclic groups, alkoxy, substituted oxy (--O--R.sub.aa), aryl,
aralkyl, heterocyclic radical, heteroaryl, heteroarylalkyl, amino
(--N(R.sub.bb)(R.sub.cc)), imino(.dbd.NR.sub.bb), amido
(--C(O)N(R.sub.bb)(R.sub.cc) or --N(R.sub.bb)C(O)R.sub.aa), azido
(--N.sub.3), nitro (--NO.sub.2), cyano (--CN), carbamido
(--OC(O)N(R.sub.bb)(R.sub.cc) or --N(R.sub.bb)C(O)OR.sub.aa),
ureido (--N(R.sub.bb)C(O)N(R.sub.bb)(R.sub.cc)), thioureido
(--N(R.sub.bb)C(S)N(R.sub.bb)--R.sub.cc)), guanidinyl
(--N(R.sub.bb)C(.dbd.NR.sub.bb)N(R.sub.bb)(R.sub.cc)), amidinyl
(--C(.dbd.NR.sub.bb)N(R.sub.bb)(R.sub.cc) or
--N(R.sub.bb)C(.dbd.NR.sub.bb)(R.sub.aa)), thiol (--SR.sub.bb),
sulfinyl (--S(O)R.sub.bb), sulfonyl (--S(O).sub.2R.sub.bb) and
sulfonamidyl (--S(O).sub.2N(R.sub.bb)(R.sub.cc) or
--N(R.sub.bb)S--(O).sub.2R.sub.bb). Wherein each R.sub.aa, R.sub.bb
and R.sub.cc is, independently, H, an optionally linked chemical
functional group or a further substituent group with a preferred
list including without limitation, alkyl, alkenyl, alkynyl,
aliphatic, alkoxy, acyl, aryl, aralkyl, heteroaryl, alicyclic,
heterocyclic and heteroarylalkyl. Selected substituents within the
compounds described herein are present to a recursive degree.
[0376] As used herein, "alkyl," as used herein, means a saturated
straight or branched hydrocarbon radical containing up to twenty
four carbon atoms. Examples of alkyl groups include without
limitation, methyl, ethyl, propyl, butyl, isopropyl, n-hexyl,
octyl, decyl, dodecyl and the like. Alkyl groups typically include
from 1 to about 24 carbon atoms, more typically from 1 to about 12
carbon atoms (C.sub.1-C.sub.12 alkyl) with from 1 to about 6 carbon
atoms being more preferred.
[0377] As used herein, "alkenyl," means a straight or branched
hydrocarbon chain radical containing up to twenty four carbon atoms
and having at least one carbon-carbon double bond. Examples of
alkenyl groups include without limitation, ethenyl, propenyl,
butenyl, 1-methyl-2-buten-1-yl, dienes such as 1,3-butadiene and
the like. Alkenyl groups typically include from 2 to about 24
carbon atoms, more typically from 2 to about 12 carbon atoms with
from 2 to about 6 carbon atoms being more preferred. Alkenyl groups
as used herein may optionally include one or more further
substituent groups.
[0378] As used herein, "alkynyl," means a straight or branched
hydrocarbon radical containing up to twenty four carbon atoms and
having at least one carbon-carbon triple bond. Examples of alkynyl
groups include, without limitation, ethynyl, 1-propynyl, 1-butynyl,
and the like. Alkynyl groups typically include from 2 to about 24
carbon atoms, more typically from 2 to about 12 carbon atoms with
from 2 to about 6 carbon atoms being more preferred. Alkynyl groups
as used herein may optionally include one or more further
substituent groups.
[0379] As used herein, "acyl," means a radical formed by removal of
a hydroxyl group from an organic acid and has the general Formula
--C(O)--X where X is typically aliphatic, alicyclic or aromatic.
Examples include aliphatic carbonyls, aromatic carbonyls, aliphatic
sulfonyls, aromatic sulfinyls, aliphatic sulfinyls, aromatic
phosphates, aliphatic phosphates and the like. Acyl groups as used
herein may optionally include further substituent groups.
[0380] As used herein, "alicyclic" means a cyclic ring system
wherein the ring is aliphatic. The ring system can comprise one or
more rings wherein at least one ring is aliphatic. Preferred
alicyclics include rings having from about 5 to about 9 carbon
atoms in the ring. Alicyclic as used herein may optionally include
further substituent groups.
[0381] As used herein, "aliphatic" means a straight or branched
hydrocarbon radical containing up to twenty four carbon atoms
wherein the saturation between any two carbon atoms is a single,
double or triple bond. An aliphatic group preferably contains from
1 to about 24 carbon atoms, more typically from 1 to about 12
carbon atoms with from 1 to about 6 carbon atoms being more
preferred. The straight or branched chain of an aliphatic group may
be interrupted with one or more heteroatoms that include nitrogen,
oxygen, sulfur and phosphorus. Such aliphatic groups interrupted by
heteroatoms include without limitation, polyalkoxys, such as
polyalkylene glycols, polyamines, and polyimines. Aliphatic groups
as used herein may optionally include further substituent
groups.
[0382] As used herein, "alkoxy" means a radical formed between an
alkyl group and an oxygen atom wherein the oxygen atom is used to
attach the alkoxy group to a parent molecule. Examples of alkoxy
groups include without limitation, methoxy, ethoxy, propoxy,
isopropoxy, n-butoxy, sec-butoxy, tert-butoxy, n-pentoxy,
neopentoxy, n-hexoxy and the like. Alkoxy groups as used herein may
optionally include further substituent groups.
[0383] As used herein, "aminoalkyl" means an amino substituted
C.sub.1-C.sub.12 alkyl radical. The alkyl portion of the radical
forms a covalent bond with a parent molecule. The amino group can
be located at any position and the aminoalkyl group can be
substituted with a further substituent group at the alkyl and/or
amino portions.
[0384] As used herein, "aralkyl" and "arylalkyl" mean an aromatic
group that is covalently linked to a C.sub.1-C.sub.12 alkyl
radical. The alkyl radical portion of the resulting aralkyl (or
arylalkyl) group forms a covalent bond with a parent molecule.
Examples include without limitation, benzyl, phenethyl and the
like. Aralkyl groups as used herein may optionally include further
substituent groups attached to the alkyl, the aryl or both groups
that form the radical group.
[0385] As used herein, "aryl" and "aromatic" mean a mono- or
polycyclic carbocyclic ring system radicals having one or more
aromatic rings. Examples of aryl groups include without limitation,
phenyl, naphthyl, tetrahydronaphthyl, indanyl, idenyl and the like.
Preferred aryl ring systems have from about 5 to about 20 carbon
atoms in one or more rings. Aryl groups as used herein may
optionally include further substituent groups.
[0386] As used herein, "halo" and "halogen," mean an atom selected
from fluorine, chlorine, bromine and iodine.
[0387] As used herein, "heteroaryl," and "heteroaromatic," mean a
radical comprising a mono- or poly-cyclic aromatic ring, ring
system or fused ring system wherein at least one of the rings is
aromatic and includes one or more heteroatoms. Heteroaryl is also
meant to include fused ring systems including systems where one or
more of the fused rings contain no heteroatoms. Heteroaryl groups
typically include one ring atom selected from sulfur, nitrogen or
oxygen. Examples of heteroaryl groups include without limitation,
pyridinyl, pyrazinyl, pyrimidinyl, pyrrolyl, pyrazolyl, imidazolyl,
thiazolyl, oxazolyl, isooxazolyl, thiadiazolyl, oxadiazolyl,
thiophenyl, furanyl, quinolinyl, isoquinolinyl, benzimidazolyl,
benzooxazolyl, quinoxalinyl and the like. Heteroaryl radicals can
be attached to a parent molecule directly or through a linking
moiety such as an aliphatic group or hetero atom. Heteroaryl groups
as used herein may optionally include further substituent
groups.
B. OLIGOMERIC COMPOUNDS
[0388] In certain embodiments, the present invention provides
oligomeric compounds. In certain embodiments, such oligomeric
compounds comprise oligonucleotides optionally comprising one or
more conjugate and/or terminal groups. In certain embodiments, an
oligomeric compound consists of an oligonucleotide. In certain
embodiments, oligonucleotides comprise one or more chemical
modifications. Such chemical modifications include modifications of
one or more nucleoside (including modifications to the sugar moiety
and/or the nucleobase) and/or modifications to one or more
internucleoside linkage.
[0389] a. Certain Modified Nucleosides
[0390] In certain embodiments, provided herein are oligomeric
compounds comprising or consisting of oligonucleotides comprising
at least one modified nucleoside. Such modified nucleosides
comprise a modified sugar moeity, a modified nucleobase, or both a
modified sugar moiety and a modified nucleobase.
[0391] i. Certain Modified Sugar Moieties
[0392] In certain embodiments, compounds of the invention comprise
one or more modified nucleosides comprising a modified sugar
moiety. Such compounds comprising one or more sugar-modified
nucleosides may have desirable properties, such as enhanced
nuclease stability or increased binding affinity with a target
nucleic acid relative to an oligonucleotide comprising only
nucleosides comprising naturally occurring sugar moieties. In
certain embodiments, modified sugar moieties are substituted sugar
moieties. In certain embodiments, modified sugar moieties are sugar
surrogates. Such sugar surrogates may comprise one or more
substitutions corresponding to those of substituted sugar
moieties.
[0393] In certain embodiments, modified sugar moieties are
substituted sugar moieties comprising one or more non-bridging
sugar substituent, including but not limited to substituents at the
2' and/or 5' positions. Examples of sugar substituents suitable for
the 2'-position, include, but are not limited to: 2'-F,
2'-OCH.sub.3 ("OMe" or "O-methyl"), and
2'-O(CH.sub.2).sub.2OCH.sub.3 ("MOE"). In certain embodiments,
sugar substituents at the 2' position is selected from allyl,
amino, azido, thio, O-allyl, O--C.sub.1-C.sub.10 alkyl,
O--C.sub.1-C.sub.10 substituted alkyl; OCF.sub.3,
O(CH.sub.2).sub.2SCH.sub.3, O(CH.sub.2).sub.2--O--N(Rm)(Rn), and
O--CH.sub.2--C(.dbd.O)--N(Rm)(Rn), where each Rm and Rn is,
independently, H or substituted or unsubstituted C.sub.1-C.sub.10
alkyl. Examples of sugar substituents at the 5'-position, include,
but are not limited to: 5'-methyl (R or S); 5'-vinyl, and
5'-methoxy. In certain embodiments, substituted sugars comprise
more than one non-bridging sugar substituent, for example,
2'-F-5'-methyl sugar moieties (see, e.g., PCT International
Application WO 2008/101157, for additional 5',2'-bis substituted
sugar moieties and nucleosides).
[0394] Nucleosides comprising 2'-substituted sugar moieties are
referred to as 2'-substituted nucleosides. In certain embodiments,
a 2'-substituted nucleoside comprises a 2'-substituent group
selected from halo, allyl, amino, azido, SH, CN, OCN, CF.sub.3,
OCF.sub.3, O, S, or N(R.sub.m)-alkyl; O, S, or N(R.sub.m)-alkenyl;
O, S or N(R.sub.m)-alkynyl; O-alkylenyl-O-alkyl, alkynyl, alkaryl,
aralkyl, O-alkaryl, O-aralkyl, O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n) or
O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n), where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl. These
2'-substituent groups can be further substituted with one or more
substituent groups independently selected from hydroxyl, amino,
alkoxy, carboxy, benzyl, phenyl, nitro (NO.sub.2), thiol,
thioalkoxy (S-alkyl), halogen, alkyl, aryl, alkenyl and
alkynyl.
[0395] In certain embodiments, a 2'-substituted nucleoside
comprises a 2'-substituent group selected from F, NH.sub.2,
N.sub.3, OCF.sub.3, O--CH.sub.3, O(CH.sub.2).sub.3NH.sub.2,
CH.sub.2--CH.dbd.CH.sub.2, O--CH.sub.2--CH.dbd.CH.sub.2,
OCH.sub.2CH.sub.2OCH.sub.3, O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(R.sub.m)(R.sub.n),
O(CH.sub.2).sub.2--O--(CH.sub.2).sub.2N(CH.sub.3).sub.2, and
N-substituted acetamide
(O--CH.sub.2--C(.dbd.O)--N(R.sub.m)(R.sub.n) where each R.sub.m and
R.sub.n is, independently, H, an amino protecting group or
substituted or unsubstituted C.sub.1-C.sub.10 alkyl.
[0396] In certain embodiments, a 2'-substituted nucleoside
comprises a sugar moiety comprising a 2'-substituent group selected
from F, OCF.sub.3, O--CH.sub.3, OCH.sub.2CH.sub.2OCH.sub.3,
O(CH.sub.2).sub.2SCH.sub.3,
O--(CH.sub.2).sub.2--O--N(CH.sub.3).sub.2,
--O(CH.sub.2).sub.2O(CH.sub.2).sub.2N(CH.sub.3).sub.2, and
O--CH.sub.2--C(.dbd.O)--N(H)CH.sub.3.
[0397] In certain embodiments, a 2'-substituted nucleoside
comprises a sugar moiety comprising a 2'-substituent group selected
from F, O--CH.sub.3, and OCH.sub.2CH.sub.2OCH.sub.3.
[0398] Certain modified sugar moieties comprise a bridging sugar
substituent that forms a second ring resulting in a bicyclic sugar
moiety. In certain such embodiments, the bicyclic sugar moiety
comprises a bridge between the 4' and the 2' furanose ring atoms.
Examples of such 4' to 2' sugar substituents, include, but are not
limited to: --[C(R.sub.a)(R.sub.b)].sub.n--,
--[C(R.sub.a)(R.sub.b)].sub.n--O--, --C(R.sub.aR.sub.b)--N(R)--O--
or, --C(R.sub.aR.sub.b)--O--N(R)--; 4'-CH.sub.2-2',
4'-(CH.sub.2).sub.2-2', 4'-(CH.sub.2)--O-2' (LNA);
4'-(CH.sub.2)--S-2; 4'-(CH.sub.2).sub.2--O-2' (ENA);
4'-CH(CH.sub.3)--O-2' (cEt) and 4'-CH(CH.sub.2OCH.sub.3)--O-2', and
analogs thereof (see, e.g., U.S. Pat. No. 7,399,845, issued on Jul.
15, 2008); 4'-C(CH.sub.3)(CH.sub.3)--O-2' and analogs thereof,
(see, e.g., WO2009/006478, published Jan. 8, 2009);
4'-CH.sub.2--N(OCH.sub.3)-2' and analogs thereof (see, e.g.,
WO2008/150729, published Dec. 11, 2008);
4'-CH.sub.2--O--N(CH.sub.3)-2' (see, e.g., US2004/0171570,
published Sep. 2, 2004); 4'-CH.sub.2--O--N(R)-2', and
4'-CH.sub.2--N(R)--O-2'-, wherein each R is, independently, H, a
protecting group, or C.sub.1-C.sub.12 alkyl;
4'-CH.sub.2--N(R)--O-2', wherein R is H, C.sub.1-C.sub.12 alkyl, or
a protecting group (see, U.S. Pat. No. 7,427,672, issued on Sep.
23, 2008); 4'-CH.sub.2--C(H)(CH.sub.3)-2' (see, e.g.,
Chattopadhyaya, et al., J. Org. Chem., 2009, 74, 118-134); and
4'-CH.sub.2--C(.dbd.CH.sub.2)-2' and analogs thereof (see,
published PCT International Application WO 2008/154401, published
on Dec. 8, 2008).
[0399] In certain embodiments, such 4' to 2' bridges independently
comprise from 1 to 4 linked groups independently selected from
--[C(R.sub.a)(R.sub.b)].sub.n--, --C(R.sub.a).dbd.C(R.sub.b)--,
--C(R.sub.a).dbd.N--, --C(.dbd.NR.sub.a)--, --C(.dbd.O)--,
--C(.dbd.S)--, --O--, --Si(R.sub.a).sub.2--, --S(.dbd.O).sub.x--,
and --N(R.sub.a)--;
[0400] wherein:
[0401] x is 0, 1, or 2;
[0402] n is 1, 2, 3, or 4;
[0403] each R.sub.a and R.sub.b is, independently, H, a protecting
group, hydroxyl, C.sub.1-C.sub.12 alkyl, substituted
C.sub.1-C.sub.12 alkyl, C.sub.2-C.sub.12 alkenyl, substituted
C.sub.2-C.sub.12 alkenyl, C.sub.2-C.sub.12 alkynyl, substituted
C.sub.2-C.sub.12 alkynyl, C.sub.5-C.sub.20 aryl, substituted
C.sub.5-C.sub.20 aryl, heterocycle radical, substituted heterocycle
radical, heteroaryl, substituted heteroaryl, C.sub.5-C.sub.7
alicyclic radical, substituted C.sub.5-C.sub.7 alicyclic radical,
halogen, OJ.sub.1, NJ.sub.1J.sub.2, SJ.sub.1, N.sub.3, COOJ.sub.1,
acyl (C(.dbd.O)--H), substituted acyl, CN, sulfonyl
(S(.dbd.O).sub.2-J.sub.1), or sulfoxyl (S(.dbd.O)-J.sub.1); and
[0404] each J.sub.1 and J.sub.2 is, independently, H,
C.sub.1-C.sub.12 alkyl, substituted C.sub.1-C.sub.12 alkyl,
C.sub.2-C.sub.12 alkenyl, substituted C.sub.2-C.sub.12 alkenyl,
C.sub.2-C.sub.12 alkynyl, substituted C.sub.2-C.sub.12 alkynyl,
C.sub.5-C.sub.20 aryl, substituted C.sub.5-C.sub.20 aryl, acyl
(C(.dbd.O)--H), substituted acyl, a heterocycle radical, a
substituted heterocycle radical, C.sub.1-C.sub.12 aminoalkyl,
substituted C.sub.1-C.sub.12 aminoalkyl, or a protecting group.
[0405] Nucleosides comprising bicyclic sugar moieties are referred
to as bicyclic nucleosides or BNAs. Bicyclic nucleosides include,
but are not limited to, (A) .alpha.-L-Methyleneoxy
(4'-CH.sub.2--O-2') BNA, (B) .beta.-D-Methyleneoxy
(4'-CH.sub.2--O-2') BNA (also referred to as locked nucleic acid or
LNA), (C) Ethyleneoxy (4'-(CH.sub.2).sub.2--O-2') BNA, (D) Aminooxy
(4'-CH.sub.2--O--N(R)-2') BNA, (E) Oxyamino
(4'-CH.sub.2--N(R)--O-2') BNA, (F) Methyl(methyleneoxy)
(4'-CH(CH.sub.3)--O-2') BNA (also referred to as constrained ethyl
or cEt), (G) methylene-thio (4'-CH.sub.2--S-2') BNA, (H)
methylene-amino (4'-CH.sub.2--N(R)-2') BNA, (I) methyl carbocyclic
(4'-CH.sub.2--CH(CH.sub.3)-2') BNA, (J) propylene carbocyclic
(4'-(CH.sub.2).sub.3-2') BNA, and (K) Ethylene(methoxy)
(4'-(CH(CH.sub.2OMe)-O-2') BNA (also referred to as constrained MOE
or cMOE) as depicted below.
##STR00002## ##STR00003##
wherein Bx is a nucleobase moiety and R is, independently, H, a
protecting group, or C.sub.1-C.sub.12 alkyl.
[0406] Additional bicyclic sugar moieties are known in the art, for
example: Singh et al., Chem. Commun., 1998, 4, 455-456; Koshkin et
al., Tetrahedron, 1998, 54, 3607-3630; Wahlestedt et al., Proc.
Natl. Acad. Sci. U.S.A., 2000, 97, 5633-5638; Kumar et al., Bioorg.
Med. Chem. Lett., 1998, 8, 2219-2222; Singh et al., J. Org. Chem.,
1998, 63, 10035-10039; Srivastava et al., J. Am. Chem. Soc.,
129(26) 8362-8379 (Jul. 4, 2007); Elayadi et al., Curr. Opinion
Invens. Drugs, 2001, 2, 558-561; Braasch et al., Chem. Biol., 2001,
8, 1-7; Orum et al., Curr. Opinion Mol. Ther., 2001, 3, 239-243;
U.S. Pat. Nos. 7,053,207, 6,268,490, 6,770,748, 6,794,499,
7,034,133, 6,525,191, 6,670,461, and 7,399,845; WO 2004/106356, WO
1994/14226, WO 2005/021570, and WO 2007/134181; U.S. Patent
Publication Nos. US2004/0171570, US2007/0287831, and
US2008/0039618; U.S. patent Ser. Nos. 12/129,154, 60/989,574,
61/026,995, 61/026,998, 61/056,564, 61/086,231, 61/097,787, and
61/099,844; and PCT International Applications Nos.
PCT/US2008/064591, PCT/US2008/066154, and PCT/US2008/068922.
[0407] In certain embodiments, bicyclic sugar moieties and
nucleosides incorporating such bicyclic sugar moieties are further
defined by isomeric configuration. For example, a nucleoside
comprising a 4'-2' methylene-oxy bridge, may be in the .alpha.-L
configuration or in the .beta.-D configuration. Previously,
.alpha.-L-methyleneoxy (4'-CH.sub.2--O-2') bicyclic nucleosides
have been incorporated into antisense oligonucleotides that showed
antisense activity (Frieden et al., Nucleic Acids Research, 2003,
21, 6365-6372).
[0408] In certain embodiments, substituted sugar moieties comprise
one or more non-bridging sugar substituent and one or more bridging
sugar substituent (e.g., 5'-substituted and 4'-2' bridged sugars).
(see, PCT International Application WO 2007/134181, published on
Nov. 22, 2007, wherein LNA is substituted with, for example, a
5'-methyl or a 5'-vinyl group).
[0409] In certain embodiments, modified sugar moieties are sugar
surrogates. In certain such embodiments, the oxygen atom of the
naturally occurring sugar is substituted, e.g., with a sulfer,
carbon or nitrogen atom. In certain such embodiments, such modified
sugar moiety also comprises bridging and/or non-bridging
substituents as described above. For example, certain sugar
surrogates comprise a 4'-sulfer atom and a substitution at the
2'-position (see, e.g., published U.S. Patent Application
US2005/0130923, published on Jun. 16, 2005) and/or the 5' position.
By way of additional example, carbocyclic bicyclic nucleosides
having a 4'-2' bridge have been described (see, e.g., Freier et
al., Nucleic Acids Research, 1997, 25(22), 4429-4443 and Albaek et
al., J. Org. Chem., 2006, 71, 7731-7740).
[0410] In certain embodiments, sugar surrogates comprise rings
having other than 5-atoms. For example, in certain embodiments, a
sugar surrogate comprises a six-membered tetrahydropyran. Such
tetrahydropyrans may be further modified or substituted.
Nucleosides comprising such modified tetrahydropyrans include, but
are not limited to, hexitol nucleic acid (HNA), anitol nucleic acid
(ANA), manitol nucleic acid (MNA) (see Leumann, C J. Bioorg. &
Med. Chem. (2002) 10:841-854), fluoro HNA (F-HNA), and those
compounds having Formula VII:
##STR00004##
wherein independently for each of said at least one tetrahydropyran
nucleoside analog of Formula VII:
[0411] Bx is a nucleobase moiety;
[0412] T.sub.3 and T.sub.4 are each, independently, an
internucleoside linking group linking the tetrahydropyran
nucleoside analog to the antisense compound or one of T.sub.3 and
T.sub.4 is an internucleoside linking group linking the
tetrahydropyran nucleoside analog to the antisense compound and the
other of T.sub.3 and T.sub.4 is H, a hydroxyl protecting group, a
linked conjugate group, or a 5' or 3'-terminal group;
q.sub.1, q.sub.2, q.sub.3, q.sub.4, q.sub.5, q.sub.6 and q.sub.7
are each, independently, H, C.sub.1-C.sub.6 alkyl, substituted
C.sub.1-C.sub.6 alkyl, C.sub.2-C.sub.6 alkenyl, substituted
C.sub.2-C.sub.6 alkenyl, C.sub.2-C.sub.6 alkynyl, or substituted
C.sub.2-C.sub.6 alkynyl; and
[0413] each of R.sub.1 and R.sub.2 is independently selected from
among: hydrogen, halogen, substituted or unsubstituted alkoxy,
NJ.sub.1J.sub.2, SJ.sub.1, N.sub.3, OC(.dbd.X)J.sub.1,
OC(.dbd.X)NJ.sub.1J.sub.2, NJ.sub.3C(.dbd.X)NJ.sub.1J.sub.2, and
CN, wherein X is O, S or NJ.sub.1, and each J.sub.1, J.sub.2, and
J.sub.3 is, independently, H or C.sub.1-C.sub.6 alkyl.
[0414] In certain embodiments, the modified THP nucleosides of
Formula VII are provided wherein q.sub.1, q.sub.2, q.sub.3,
q.sub.4, q.sub.5, q.sub.6 and q.sub.7 are each H. In certain
embodiments, at least one of q.sub.1, q.sub.2, q.sub.3, q.sub.4,
q.sub.5, q.sub.6 and q.sub.7 is other than H. In certain
embodiments, at least one of q.sub.1, q.sub.2, q.sub.3, q.sub.4,
q.sub.5, q.sub.6 and q.sub.7 is methyl. In certain embodiments, THP
nucleosides of Formula VII are provided wherein one of R.sub.1 and
R.sub.2 is F. In certain embodiments, R.sub.1 is fluoro and R.sub.2
is H, R.sub.1 is methoxy and R.sub.2 is H, and R.sub.1 is
methoxyethoxy and R.sub.2 is H.
[0415] Many other bicyclo and tricyclo sugar surrogate ring systems
are also known in the art that can be used to modify nucleosides
for incorporation into antisense compounds (see, e.g., review
article: Leumann, J. C, Bioorganic & Medicinal Chemistry, 2002,
10, 841-854).
[0416] Combinations of modifications are also provided without
limitation, such as 2'-F-5'-methyl substituted nucleosides (see PCT
International Application WO 2008/101157 Published on Aug. 21, 2008
for other disclosed 5',2'-bis substituted nucleosides) and
replacement of the ribosyl ring oxygen atom with S and further
substitution at the 2'-position (see published U.S. Patent
Application US2005-0130923, published on Jun. 16, 2005) or
alternatively 5'-substitution of a bicyclic nucleic acid (see PCT
International Application WO 2007/134181, published on Nov. 22,
2007 wherein a 4'-CH.sub.2--O-2' bicyclic nucleoside is further
substituted at the 5' position with a 5'-methyl or a 5'-vinyl
group). The synthesis and preparation of carbocyclic bicyclic
nucleosides along with their oligomerization and biochemical
studies have also been described (see, e.g., Srivastava et al., J.
Am. Chem. Soc. 2007, 129(26), 8362-8379).
[0417] In certain embodiments, the present invention provides
oligonucleotides comprising modified nucleosides. Those modified
nucleotides may include modified sugars, modified nucleobases,
and/or modified linkages. The specific modifications are selected
such that the resulting oligonucleotides possess desirable
characteristics. In certain embodiments, oligonucleotides comprise
one or more RNA-like nucleosides. In certain embodiments,
oligonucleotides comprise one or more DNA-like nucleotides.
[0418] ii. Certain Modified Nucleobases
[0419] In certain embodiments, nucleosides of the present invention
comprise one or more unmodified nucleobases. In certain
embodiments, nucleosides of the present invention comprise one or
more modified nucleobases.
[0420] In certain embodiments, modified nucleobases are selected
from: universal bases, hydrophobic bases, promiscuous bases,
size-expanded bases, and fluorinated bases as defined herein.
5-substituted pyrimidines, 6-azapyrimidines and N-2, N-6 and O-6
substituted purines, including 2-aminopropyladenine,
5-propynyluracil; 5-propynylcytosine; 5-hydroxymethyl cytosine,
xanthine, hypoxanthine, 2-aminoadenine, 6-methyl and other alkyl
derivatives of adenine and guanine, 2-propyl and other alkyl
derivatives of adenine and guanine, 2-thiouracil, 2-thiothymine and
2-thiocytosine, 5-halouracil and cytosine, 5-propynyl
(--C.ident.C--CH.sub.3) uracil and cytosine and other alkynyl
derivatives of pyrimidine bases, 6-azo uracil, cytosine and
thymine, 5-uracil (pseudouracil), 4-thiouracil, 8-halo, 8-amino,
8-thiol, 8-thioalkyl, 8-hydroxyl and other 8-substituted adenines
and guanines, 5-halo particularly 5-bromo, 5-trifluoromethyl and
other 5-substituted uracils and cytosines, 7-methylguanine and
7-methyladenine, 2-F-adenine, 2-amino-adenine, 8-azaguanine and
8-azaadenine, 7-deazaguanine and 7-deazaadenine, 3-deazaguanine and
3-deazaadenine, universal bases, hydrophobic bases, promiscuous
bases, size-expanded bases, and fluorinated bases as defined
herein. Further modified nucleobases include tricyclic pyrimidines
such as phenoxazine cytidine([5,4-b][1,4]benzoxazin-2(3H)-one),
phenothiazine cytidine
(1H-pyrimido[5,4-b][1,4]benzothiazin-2(3H)-one), G-clamps such as a
substituted phenoxazine cytidine (e.g.
9-(2-aminoethoxy)-H-pyrimido[5,4-b][1,4]benzoxazin-2(3H)-one),
carbazole cytidine (2H-pyrimido[4,5-b]indol-2-one), pyridoindole
cytidine (H-pyrido[3',2':4,5]pyrrolo[2,3-d]pyrimidin-2-one).
Modified nucleobases may also include those in which the purine or
pyrimidine base is replaced with other heterocycles, for example
7-deaza-adenine, 7-deazaguanosine, 2-aminopyridine and 2-pyridone.
Further nucleobases include those disclosed in U.S. Pat. No.
3,687,808, those disclosed in The Concise Encyclopedia Of Polymer
Science And Engineering, Kroschwitz, J. I., Ed., John Wiley &
Sons, 1990, 858-859; those disclosed by Englisch et al., Angewandte
Chemie, International Edition, 1991, 30, 613; and those disclosed
by Sanghvi, Y. S., Chapter 15, Antisense Research and Applications,
Crooke, S. T. and Lebleu, B., Eds., CRC Press, 1993, 273-288.
[0421] Representative United States patents that teach the
preparation of certain of the above noted modified nucleobases as
well as other modified nucleobases include without limitation, U.S.
Pat. Nos. 3,687,808; 4,845,205; 5,130,302; 5,134,066; 5,175,273;
5,367,066; 5,432,272; 5,457,187; 5,459,255; 5,484,908; 5,502,177;
5,525,711; 5,552,540; 5,587,469; 5,594,121; 5,596,091; 5,614,617;
5,645,985; 5,681,941; 5,750,692; 5,763,588; 5,830,653 and
6,005,096, certain of which are commonly owned with the instant
application, and each of which is herein incorporated by reference
in its entirety.
[0422] b. Certain Internucleoside Linkages
[0423] In certain embodiments, nucleosides may be linked together
using any internucleoside linkage to form oligonucleotides. The two
main classes of internucleoside linking groups are defined by the
presence or absence of a phosphorus atom. Representative phosphorus
containing internucleoside linkages include, but are not limited
to, phosphodiesters (P.dbd.O), phosphotriesters,
methylphosphonates, phosphoramidate, and phosphorothioates
(P.dbd.S). Representative non-phosphorus containing internucleoside
linking groups include, but are not limited to,
methylenemethylimino (--CH.sub.2--N(CH.sub.3)--O--CH.sub.2--)
thiodiester (--O--C(O)--S--), thionocarbamate (--O--C(O)(NH)--S--);
siloxane (--O--Si(H).sub.2--O--); and N,N'-dimethylhydrazine
(--CH.sub.2--N(CH.sub.3)--N(CH.sub.3)--). Modified linkages,
compared to natural phosphodiester linkages, can be used to alter,
typically increase, nuclease resistance of the oligonucleotide. In
certain embodiments, internucleoside linkages having a chiral atom
can be prepared as a racemic mixture, or as separate enantiomers.
Representative chiral linkages include, but are not limited to,
alkylphosphonates and phosphorothioates. Methods of preparation of
phosphorous-containing and non-phosphorous-containing
internucleoside linkages are well known to those skilled in the
art.
[0424] The oligonucleotides described herein contain one or more
asymmetric centers and thus give rise to enantiomers,
diastereomers, and other stereoisomeric configurations that may be
defined, in terms of absolute stereochemistry, as (R) or (S),
.alpha. or .beta. such as for sugar anomers, or as (D) or (L) such
as for amino acids etc. Included in the antisense compounds
provided herein are all such possible isomers, as well as their
racemic and optically pure forms.
[0425] Neutral internucleoside linkages include without limitation,
phosphotriesters, methylphosphonates, MMI
(3'-CH.sub.2--N(CH.sub.3)--O-5'), amide-3
(3'-CH.sub.2--C(.dbd.P)--N(H)-5'), amide-4
(3'-CH.sub.2--N(H)--C(.dbd.O)-5'), formacetal
(3'-O--CH.sub.2--O-5'), and thioformacetal (3'-S--CH.sub.2--O-5').
Further neutral internucleoside linkages include nonionic linkages
comprising siloxane (dialkylsiloxane), carboxylate ester,
carboxamide, sulfide, sulfonate ester and amides (See for example:
Carbohydrate Modifications in Antisense Research; Y. S. Sanghvi and
P. D. Cook, Eds., ACS Symposium Series 580; Chapters 3 and 4,
40-65). Further neutral internucleoside linkages include nonionic
linkages comprising mixed N, O, S and CH.sub.2 component parts.
[0426] i. 3'-Endo Modifications
[0427] In one aspect of the present disclosure, oligomeric
compounds include nucleosides synthetically modified to induce a
3'-endo sugar conformation. A nucleoside can incorporate synthetic
modifications of the heterocyclic base moiety, the sugar moiety or
both to induce a desired 3'-endo sugar conformation. These modified
nucleosides are used to mimic RNA like nucleosides so that
particular properties of an oligomeric compound can be enhanced
while maintaining the desirable 3'-endo conformational geometry.
There is an apparent preference for an RNA type duplex (A form
helix, predominantly 3'-endo) as a requirement of RNA interference
which is supported in part by the fact that duplexes composed of
2'-deoxy-2'-F-nucleosides appear efficient in triggering RNAi
response in the C. elegans system. Properties that are enhanced by
using more stable 3'-endo nucleosides include but aren't limited to
modulation of pharmacokinetic properties through modification of
protein binding, protein off-rate, absorption and clearance;
modulation of nuclease stability as well as chemical stability;
modulation of the binding affinity and specificity of the oligomer
(affinity and specificity for enzymes as well as for complementary
sequences); and increasing efficacy of RNA cleavage. The present
invention provides oligomeric compounds having one or more
nucleosides modified in such a way as to favor a C3'-endo type
conformation.
##STR00005##
[0428] Nucleoside conformation is influenced by various factors
including substitution at the 2', 3' or 4'-positions of the
pentofuranosyl sugar. Electronegative substituents generally prefer
the axial positions, while sterically demanding substituents
generally prefer the equatorial positions (Principles of Nucleic
Acid Structure, Wolfgang Sanger, 1984, Springer-Verlag.)
Modification of the 2' position to favor the 3'-endo conformation
can be achieved while maintaining the 2'-OH as a recognition
element, as exemplified in Example 35, below (Gallo et al.,
Tetrahedron (2001), 57, 5707-5713. Harry-O'kuru et al., J. Org.
Chem., (1997), 62(6), 1754-1759 and Tang et al., J. Org. Chem.
(1999), 64, 747-754.) Alternatively, preference for the 3'-endo
conformation can be achieved by deletion of the 2'-OH as
exemplified by 2' deoxy-2'F-nucleosides (Kawasaki et al., J. Med.
Chem. (1993), 36, 831-841), which adopts the 3'-endo conformation
positioning the electronegative fluorine atom in the axial
position. Other modifications of the ribose ring, for example
substitution at the 4'-position to give 4'-F modified nucleosides
(Guillerm et al., Bioorganic and Medicinal Chemistry Letters
(1995), 5, 1455-1460 and Owen et al., J. Org. Chem. (1976), 41,
3010-3017), or for example modification to yield methanocarba
nucleoside analogs (Jacobson et al., J. Med. Chem. Lett. (2000),
43, 2196-2203 and Lee et al., Bioorganic and Medicinal Chemistry
Letters (2001), 11, 1333-1337) also induce preference for the
3'-endo conformation. Some modifications actually lock the
conformational geometry by formation of a bicyclic sugar moiety
e.g. locked nucleic acid (LNA, Singh et al, Chem. Commun. (1998),
4, 455-456), and ethylene bridged nucleic acids (ENA, Morita et al,
Bioorganic & Medicinal Chemistry Letters (2002), 12,
73-76.)
[0429] c. Certain Motifs
[0430] In certain embodiments, oligomeric compounds comprise or
consist of oligonucleotides. In certain embodiments, such
oligonucleotides comprise one or more chemical modification. In
certain embodiments, chemically modified oligonucleotides comprise
one or more modified sugars. In certain embodiments, chemically
modified oligonucleotides comprise one or more modified
nucleobases. In certain embodiments, chemically modified
oligonucleotides comprise one or more modified internucleoside
linkages. In certain embodiments, the chemical modifications (sugar
modifications, nucleobase modifications, and/or linkage
modifications) define a pattern or motif. In certain embodiments,
the patterns of chemical modifications of sugar moieties,
internucleoside linkages, and nucleobases are each independent of
one another. Thus, an oligonucleotide may be described by its sugar
modification motif, internucleoside linkage motif and/or nucleobase
modification motif (as used herein, nucleobase modification motif
describes the chemical modifications to the nucleobases independent
of the sequence of nucleobases).
[0431] i. Certain Sugar Motifs
[0432] In certain embodiments, oligonucleotides comprise one or
more type of modified sugar moieties and/or naturally occurring
sugar moieties arranged along an oligonucleotide or region thereof
in a defined pattern or sugar motif. Such sugar motifs include but
are not limited to any of the sugar modifications discussed
herein.
[0433] In certain embodiments, the oligonucleotides comprise or
consist of a region having a gapmer sugar motif, which comprises
two external regions or "wings" and a central or internal region or
"gap." The three regions of a gapmer sugar motif (the 5'-wing, the
gap, and the 3'-wing) form a contiguous sequence of nucleosides
wherein at least some of the sugar moieties of the nucleosides of
each of the wings differ from at least some of the sugar moieties
of the nucleosides of the gap. Specifically, at least the sugar
moieties of the nucleosides of each wing that are closest to the
gap (the 3'-most nucleoside of the 5'-wing and the 5'-most
nucleoside of the 3'-wing) differ from the sugar moiety of the
neighboring gap nucleosides, thus defining the boundary between the
wings and the gap. In certain embodiments, the sugar moieties
within the gap are the same as one another. In certain embodiments,
the gap includes one or more nucleoside having a sugar moiety that
differs from the sugar moiety of one or more other nucleosides of
the gap. In certain embodiments, the sugar motifs of the two wings
are the same as one another (symmetric sugar gapmer). In certain
embodiments, the sugar motifs of the 5'-wing differs from the sugar
motif of the 3'-wing (asymmetric sugar gapmer).
[0434] ii. Certain Nucleobase Modification Motifs
[0435] In certain embodiments, oligonucleotides comprise chemical
modifications to nucleobases arranged along the oligonucleotide or
region thereof in a defined pattern or nucleobases modification
motif. In certain embodiments, each nucleobase is modified. In
certain embodiments, none of the nucleobases is chemically
modified.
[0436] In certain embodiments, oligonucleotides comprise a block of
modified nucleobases. In certain such embodiments, the block is at
the 3'-end of the oligonucleotide. In certain embodiments the block
is within 3 nucleotides of the 3'-end of the oligonucleotide. In
certain such embodiments, the block is at the 5'-end of the
oligonucleotide. In certain embodiments the block is within 3
nucleotides of the 5'-end of the oligonucleotide.
[0437] In certain embodiments, nucleobase modifications are a
function of the natural base at a particular position of an
oligonucleotide. For example, in certain embodiments each purine or
each pyrimidine in an oligonucleotide is modified. In certain
embodiments, each adenine is modified. In certain embodiments, each
guanine is modified. In certain embodiments, each thymine is
modified. In certain embodiments, each cytosine is modified. In
certain embodiments, each uracil is modified.
[0438] In certain embodiments, oligonucleotides comprise one or
more nucleosides comprising a modified nucleobase. In certain
embodiments, oligonucleotides having a gapmer sugar motif comprise
a nucleoside comprising a modified nucleobase. In certain such
embodiments, one nucleoside comprising a modified nucleobases is in
the central gap of an oligonucleotide having a gapmer sugar motif.
In certain embodiments, the sugar is an unmodified 2'
deoxynucleoside. In certain embodiments, the modified nucleobase is
selected from: a 2-thio pyrimidine and a 5-propyne pyrimidine
[0439] In certain embodiments, some, all, or none of the cytosine
moieties in an oligonucleotide are 5-methyl cytosine moieties.
Herein, 5-methyl cytosine is not a "modified nucleobase."
Accordingly, unless otherwise indicated, unmodified nucleobases
include both cytosine residues having a 5-methyl and those lacking
a 5 methyl. In certain embodiments, the methylation state of all or
some cytosine nucleobases is specified.
[0440] iii. Certain Nucleoside Motifs
[0441] In certain embodiments, oligonucleotides comprise
nucleosides comprising modified sugar moieties and/or nucleosides
comprising modified nucleobases. Such motifs can be described by
their sugar motif and their nucleobase motif separately or by their
nucleoside motif, which provides positions or patterns of modified
nucleosides (whether modified sugar, nucleobase, or both sugar and
nucleobase) in an oligonucleotide.
[0442] In certain embodiments, the oligonucleotides comprise or
consist of a region having a gapmer nucleoside motif, which
comprises two external regions or "wings" and a central or internal
region or "gap." The three regions of a gapmer nucleoside motif
(the 5'-wing, the gap, and the 3'-wing) form a contiguous sequence
of nucleosides wherein at least some of the sugar moieties and/or
nucleobases of the nucleosides of each of the wings differ from at
least some of the sugar moieties and/or nucleobase of the
nucleosides of the gap. Specifically, at least the nucleosides of
each wing that are closest to the gap (the 3'-most nucleoside of
the 5'-wing and the 5'-most nucleoside of the 3'-wing) differ from
the neighboring gap nucleosides, thus defining the boundary between
the wings and the gap. In certain embodiments, the nucleosides
within the gap are the same as one another. In certain embodiments,
the gap includes one or more nucleoside that differs from one or
more other nucleosides of the gap. In certain embodiments, the
nucleoside motifs of the two wings are the same as one another
(symmetric gapmer). In certain embodiments, the nucleoside motifs
of the 5'-wing differs from the nucleoside motif of the 3'-wing
(asymmetric gapmer).
[0443] iv. Certain 5'-Wings
[0444] In certain embodiments, the 5'-wing of a gapmer consists of
1 to 6 linked nucleosides. In certain embodiments, the 5'-wing of a
gapmer consists of 1 to 5 linked nucleosides. In certain
embodiments, the 5'-wing of a gapmer consists of 2 to 5 linked
nucleosides. In certain embodiments, the 5'-wing of a gapmer
consists of 3 to 5 linked nucleosides. In certain embodiments, the
5'-wing of a gapmer consists of 4 or 5 linked nucleosides. In
certain embodiments, the 5'-wing of a gapmer consists of 1 to 4
linked nucleosides. In certain embodiments, the 5'-wing of a gapmer
consists of 1 to 3 linked nucleosides. In certain embodiments, the
5'-wing of a gapmer consists of 1 or 2 linked nucleosides. In
certain embodiments, the 5'-wing of a gapmer consists of 2 to 4
linked nucleosides. In certain embodiments, the 5'-wing of a gapmer
consists of 2 or 3 linked nucleosides. In certain embodiments, the
5'-wing of a gapmer consists of 3 or 4 linked nucleosides. In
certain embodiments, the 5'-wing of a gapmer consists of 1
nucleoside. In certain embodiments, the 5'-wing of a gapmer
consists of 2 linked nucleosides. In certain embodiments, the
5'-wing of a gapmer consists of 3 linked nucleosides. In certain
embodiments, the 5'-wing of a gapmer consists of 4 linked
nucleosides. In certain embodiments, the 5'-wing of a gapmer
consists of 5 linked nucleosides. In certain embodiments, the
5'-wing of a gapmer consists of 6 linked nucleosides.
[0445] In certain embodiments, the 5'-wing of a gapmer comprises at
least one bicyclic nucleoside. In certain embodiments, the 5'-wing
of a gapmer comprises at least two bicyclic nucleosides. In certain
embodiments, the 5'-wing of a gapmer comprises at least three
bicyclic nucleosides. In certain embodiments, the 5'-wing of a
gapmer comprises at least four bicyclic nucleosides. In certain
embodiments, the 5'-wing of a gapmer comprises at least one
constrained ethyl nucleoside. In certain embodiments, the 5'-wing
of a gapmer comprises at least one LNA nucleoside. In certain
embodiments, each nucleoside of the 5'-wing of a gapmer is a
bicyclic nucleoside. In certain embodiments, each nucleoside of the
5'-wing of a gapmer is a constrained ethyl nucleoside. In certain
embodiments, each nucleoside of the 5'-wing of a gapmer is a LNA
nucleoside.
[0446] In certain embodiments, the 5'-wing of a gapmer comprises at
least one non-bicyclic modified nucleoside. In certain embodiments,
the 5'-wing of a gapmer comprises at least one 2'-substituted
nucleoside. In certain embodiments, the 5'-wing of a gapmer
comprises at least one 2'-MOE nucleoside. In certain embodiments,
the 5'-wing of a gapmer comprises at least one 2'-OMe nucleoside.
In certain embodiments, each nucleoside of the 5'-wing of a gapmer
is a non-bicyclic modified nucleoside. In certain embodiments, each
nucleoside of the 5'-wing of a gapmer is a 2'-substituted
nucleoside. In certain embodiments, each nucleoside of the 5'-wing
of a gapmer is a 2'-MOE nucleoside. In certain embodiments, each
nucleoside of the 5'-wing of a gapmer is a 2'-OMe nucleoside.
[0447] In certain embodiments, the 5'-wing of a gapmer comprises at
least one 2'-deoxynucleoside. In certain embodiments, each
nucleoside of the 5'-wing of a gapmer is a 2'-deoxynucleoside. In a
certain embodiments, the 5'-wing of a gapmer comprises at least one
ribonucleoside. In certain embodiments, each nucleoside of the
5'-wing of a gapmer is a ribonucleoside. In certain embodiments,
one, more than one, or each of the nucleosides of the 5'-wing is an
RNA-like nucleoside.
[0448] In certain embodiments, the 5'-wing of a gapmer comprises at
least one bicyclic nucleoside and at least one non-bicyclic
modified nucleoside. In certain embodiments, the 5'-wing of a
gapmer comprises at least one bicyclic nucleoside and at least one
2'-substituted nucleoside. In certain embodiments, the 5'-wing of a
gapmer comprises at least one bicyclic nucleoside and at least one
2'-MOE nucleoside. In certain embodiments, the 5'-wing of a gapmer
comprises at least one bicyclic nucleoside and at least one 2'-OMe
nucleoside. In certain embodiments, the 5'-wing of a gapmer
comprises at least one bicyclic nucleoside and at least one
2'-deoxynucleoside.
[0449] In certain embodiments, the 5'-wing of a gapmer comprises at
least one constrained ethyl nucleoside and at least one
non-bicyclic modified nucleoside. In certain embodiments, the
5'-wing of a gapmer comprises at least one constrained ethyl
nucleoside and at least one 2'-substituted nucleoside. In certain
embodiments, the 5'-wing of a gapmer comprises at least one
constrained ethyl nucleoside and at least one 2'-MOE nucleoside. In
certain embodiments, the 5'-wing of a gapmer comprises at least one
constrained ethyl nucleoside and at least one 2'-OMe nucleoside. In
certain embodiments, the 5'-wing of a gapmer comprises at least one
constrained ethyl nucleoside and at least one
2'-deoxynucleoside.
[0450] In certain embodiments, the 5'-wing of a gapmer has a
nucleoside motif selected from among the following: ADDA; ABDAA;
ABBA; ABB; ABAA; AABAA; AAABAA; AAAABAA; AAAAABAA; AAABAA; AABAA;
ABAB; ABADB; ABADDB; AAABB; AAAAA; ABBDC; ABDDC; ABBDCC; ABBDDC;
ABBDCC; ABBC; AA; AAA; AAAA; AAAAB; AAAAAAA; AAAAAAAA; ABBB; AB;
ABAB; AAAAB; AABBB; AAAAB; and AABBB, wherein each A is a modified
nucleoside of a first type, each B is a modified nucleoside of a
second type, each C is a modified nucleoside of a third type, and
each D is an unmodified deoxynucleoside.
[0451] In certain embodiments, the 5'-wing of a gapmer has a
nucleoside motif selected from among the following: AB, ABB, AAA,
BBB, BBBAA, AAB, BAA, BBAA, AABB, AAAB, ABBW, ABBWW, ABBB, ABBBB,
ABAB, ABABAB, ABABBB, ABABAA, AAABB, AAAABB, AABB, AAAAB, AABBB,
ABBBB, BBBBB, AAABW, AAAAA, BBBBAA, and AAABW; wherein each A is a
modified nucleoside of a first type, each B is a modified
nucleoside of a second type, and each W is a modified nucleoside of
either the first type, the second type or a third type.
[0452] In certain embodiments, the 5'-wing of a gapmer has a
nucleoside motif selected from among the following: ABB; ABAA;
AABAA; AAABAA; ABAB; ABADB; AAABB; AAAAA; AA; AAA; AAAA; AAAAB;
ABBB; AB; and ABAB; wherein each A is a modified nucleoside of a
first type, each B is a modified nucleoside of a second type, and
each W is a modified nucleoside of either the first type, the
second type or a third type.
[0453] In certain embodiments, an oligonucleotide comprises any
5'-wing motif provided herein. In certain such embodiments, the
oligonucleotide is a 5'-hemimer (does not comprise a 3'-wing). In
certain embodiments, such an oligonucleotide is a gapmer. In
certain such embodiments, the 3'-wing of the gapmer may comprise
any nucleoside motif.
[0454] In certain embodiments, the 5'-wing of a gapmer has a sugar
motif selected from among those listed in the following
non-limiting tables:
TABLE-US-00001 TABLE 1 Certain 5'-Wing Sugar Motifs Certain 5'-Wing
Sugar Motifs AAAAA ABCBB BABCC BCBBA CBACC AAAAB ABCBC BACAA BCBBB
CBBAA AAAAC ABCCA BACAB BCBBC CBBAB AAABA ABCCB BACAC BCBCA CBBAC
AAABB ABCCC BACBA BCBCB CBBBA AAABC ACAAA BACBB BCBCC CBBBB AAACA
ACAAB BACBC BCCAA CBBBC AAACB ACAAC BACCA BCCAB CBBCA AAACC ACABA
BACCB BCCAC CBBCB AABAA ACABB BACCC BCCBA CBBCC AABAB ACABC BBAAA
BCCBB CBCAA AABAC ACACA BBAAB BCCBC CBCAB AABBA ACACB BBAAC BCCCA
CBCAC AABBB ACACC BBABA BCCCB CBCBA AABBC ACBAA BBABB BCCCC CBCBB
AABCA ACBAB BBABC CAAAA CBCBC AABCB ACBAC BBACA CAAAB CBCCA AABCC
ACBBA BBACB CAAAC CBCCB AACAA ACBBB BBACC CAABA CBCCC AACAB ACBBC
BBBAA CAABB CCAAA AACAC ACBCA BBBAB CAABC CCAAB AACBA ACBCB BBBAC
CAACA CCAAC AACBB ACBCC BBBBA CAACB CCABA AACBC ACCAA BBBBB CAACC
CCABB AACCA ACCAB BBBBC CABAA CCABC AACCB ACCAC BBBCA CABAB CCACA
AACCC ACCBA BBBCB CABAC CCACB ABAAA ACCBB BBBCC CABBA CCACC ABAAB
ACCBC BBCAA CABBB CCBAA ABAAC ACCCA BBCAB CABBC CCBAB ABABA ACCCB
BBCAC CABCA CCBAC ABABB ACCCC BBCBA CABCB CCBBA ABABC BAAAA BBCBB
CABCC CCBBB ABACA BAAAB BBCBC CACAA CCBBC ABACB BAAAC BBCCA CACAB
CCBCA ABACC BAABA BBCCB CACAC CCBCB ABBAA BAABB BBCCC CACBA CCBCC
ABBAB BAABC BCAAA CACBB CCCAA ABBAC BAACA BCAAB CACBC CCCAB ABBBA
BAACB BCAAC CACCA CCCAC ABBBB BAACC BCABA CACCB CCCBA ABBBC BABAA
BCABB CACCC CCCBB ABBCA BABAB BCABC CBAAA CCCBC ABBCB BABAC BCACA
CBAAB CCCCA ABBCC BABBA BCACB CBAAC CCCCB ABCAA BABBB BCACC CBABA
CCCCC ABCAB BABBC BCBAA CBABB ABCAC BABCA BCBAB CBABC ABCBA BABCB
BCBAC CBACA
TABLE-US-00002 TABLE 2 Certain 5'-Wing Sugar Motifs Certain 5'-Wing
Sugar Motifs AAAAA BABC CBAB ABBB BAA AAAAB BACA CBAC BAAA BAB
AAABA BACB CBBA BAAB BBA AAABB BACC CBBB BABA BBB AABAA BBAA CBBC
BABB AA AABAB BBAB CBCA BBAA AB AABBA BBAC CBCB BBAB AC AABBB BBBA
CBCC BBBA BA ABAAA BBBB CCAA BBBB BB ABAAB BBBC CCAB AAA BC ABABA
BBCA CCAC AAB CA ABABB BBCB CCBA AAC CB ABBAA BBCC CCBB ABA CC
ABBAB BCAA CCBC ABB AA ABBBA BCAB CCCA ABC AB ABBBB BCAC CCCB ACA
BA BAAAA ABCB BCBA ACB BAAAB ABCC BCBB ACC BAABA ACAA BCBC BAA
BAABB ACAB BCCA BAB BABAA ACAC BCCB BAC BABAB ACBA BCCC BBA BABBA
ACBB CAAA BBB BABBB ACBC CAAB BBC BBAAA ACCA CAAC BCA BBAAB ACCB
CABA BCB BBABA ACCC CABB BCC BBABB BAAA CABC CAA BBBAA BAAB CACA
CAB BBBAB BAAC CACB CAC BBBBA BABA CACC CBA BBBBB BABB CBAA CBB
AAAA AACC CCCC CBC AAAB ABAA AAAA CCA AAAC ABAB AAAB CCB AABA ABAC
AABA CCC AABB ABBA AABB AAA AABC ABBB ABAA AAB AACA ABBC ABAB ABA
AACB ABCA ABBA ABB
[0455] In certain embodiments, each A, each B, and each C located
at the 3'-most 5'-wing nucleoside is a modified nucleoside. For
example, in certain embodiments the 5'-wing motif is selected from
among ABB, BBB, and CBB, wherein the underlined nucleoside
represents the 3'-most 5'-wing nucleoside and wherein the
underlined nucleoside is a modified nucleoside. In certain
embodiments, the 3'-most 5'-wing nucleoside comprises a bicyclic
sugar moiety selected from among cEt, cMOE, LNA, .alpha.-L-LNA, ENA
and 2'-thio LNA. In certain embodiments, the 3'-most 5'-wing
nucleoside comprises a bicyclic sugar moiety selected from among
cEt and LNA. In certain embodiments, the 3'-most 5'-wing nucleoside
comprises cEt. In certain embodiments, the 3'-most 5'-wing
nucleoside comprises LNA.
[0456] In certain embodiments, each A comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each A
comprises a modified sugar moiety. In certain embodiments, each A
comprises a 2'-substituted sugar moiety. In certain embodiments,
each A comprises a 2'-substituted sugar moiety selected from among
F, ara-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each A comprises a bicyclic sugar moiety. In certain
embodiments, each A comprises a bicyclic sugar moiety selected from
among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In
certain embodiments, each A comprises a modified nucleobase. In
certain embodiments, each A comprises a modified nucleobase
selected from among 2-thio-thymidine nucleoside and 5-propyne
uridine nucleoside. In certain embodiments, each A comprises an
HNA. In certain embodiments, each A comprises a F-HNA. In certain
embodiments, each A comprises a 5'-substituted sugar moiety
selected from among 5'-Me DNA, and 5'-(R)-Me DNA.
[0457] In certain embodiments, each B comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each B
comprises a modified sugar moiety. In certain embodiments, each B
comprises a 2'-substituted sugar moiety. In certain embodiments,
each B comprises a 2'-substituted sugar moiety selected from among
F, (ara)-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each B comprises a bicyclic sugar moiety. In certain
embodiments, each B comprises a bicyclic sugar moiety selected from
among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In
certain embodiments, each B comprises a modified nucleobase. In
certain embodiments, each B comprises a modified nucleobase
selected from among 2-thio-thymidine nucleoside and 5-propyne
urindine nucleoside. In certain embodiments, each B comprises an
HNA. In certain embodiments, each B comprises a F-HNA. In certain
embodiments, each B comprises a 5'-substituted sugar moiety
selected from among 5'-Me DNA, and 5'-(R)-Me DNA.
[0458] In certain embodiments, each A comprises a 2'-substituted
sugar moiety selected from among F, ara-F, OCH.sub.3 and
O(CH.sub.2).sub.2--OCH.sub.3 and each B comprises a bicyclic sugar
moiety selected from among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and
2'-thio LNA. In certain embodiments, each A comprises
O(CH.sub.2).sub.2--OCH.sub.3 and each B comprises cEt.
[0459] In certain embodiments, each C comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each C
comprises a modified sugar moiety. In certain embodiments, each C
comprises a 2'-substituted sugar moiety. In certain embodiments,
each C comprises a 2'-substituted sugar moiety selected from among
F, (ara)-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each C comprises a 5'-substituted sugar moiety. In
certain embodiments, each C comprises a 5'-substituted sugar moiety
selected from among 5'-Me DNA, and 5'-(R)-Me DNA. In certain
embodiments, each C comprises a bicyclic sugar moiety. In certain
embodiments, each C comprises a bicyclic sugar moiety selected from
among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In
certain embodiments, each C comprises a modified nucleobase. In
certain embodiments, each C comprises a modified nucleobase
selected from among 2-thio-thymidine and 5-propyne uridine. In
certain embodiments, each C comprises a 2-thio-thymidine
nucleoside. In certain embodiments, each C comprises an HNA. In
certain embodiments, each C comprises an F-HNA.
[0460] v. Certain 3'-Wings
[0461] In certain embodiments, the 3'-wing of a gapmer consists of
1 to 6 linked nucleosides. In certain embodiments, the 3'-wing of a
gapmer consists of 1 to 5 linked nucleosides. In certain
embodiments, the 3'-wing of a gapmer consists of 2 to 5 linked
nucleosides. In certain embodiments, the 3'-wing of a gapmer
consists of 3 to 5 linked nucleosides. In certain embodiments, the
3'-wing of a gapmer consists of 4 or 5 linked nucleosides. In
certain embodiments, the 3'-wing of a gapmer consists of 1 to 4
linked nucleosides. In certain embodiments, the 3'-wing of a gapmer
consists of 1 to 3 linked nucleosides. In certain embodiments, the
3'-wing of a gapmer consists of 1 or 2 linked nucleosides. In
certain embodiments, the 3'-wing of a gapmer consists of 2 to 4
linked nucleosides. In certain embodiments, the 3'-wing of a gapmer
consists of 2 or 3 linked nucleosides. In certain embodiments, the
3'-wing of a gapmer consists of 3 or 4 linked nucleosides. In
certain embodiments, the 3'-wing of a gapmer consists of 1
nucleoside. In certain embodiments, the 3'-wing of a gapmer
consists of 2 linked nucleosides. In certain embodiments, the
3'-wing of a gapmer consists of 31 inked nucleosides. In certain
embodiments, the 3'-wing of a gapmer consists of 4 linked
nucleosides. In certain embodiments, the 3'-wing of a gapmer
consists of 5 linked nucleosides. In certain embodiments, the
3'-wing of a gapmer consists of 6 linked nucleosides.
[0462] In certain embodiments, the 3'-wing of a gapmer comprises at
least one bicyclic nucleoside. In certain embodiments, the 3'-wing
of a gapmer comprises at least one constrained ethyl nucleoside. In
certain embodiments, the 3'-wing of a gapmer comprises at least one
LNA nucleoside. In certain embodiments, each nucleoside of the
3'-wing of a gapmer is a bicyclic nucleoside. In certain
embodiments, each nucleoside of the 3'-wing of a gapmer is a
constrained ethyl nucleoside. In certain embodiments, each
nucleoside of the 3'-wing of a gapmer is a LNA nucleoside.
[0463] In certain embodiments, the 3'-wing of a gapmer comprises at
least one non-bicyclic modified nucleoside. In certain embodiments,
the 3'-wing of a gapmer comprises at least two non-bicyclic
modified nucleosides. In certain embodiments, the 3'-wing of a
gapmer comprises at least three non-bicyclic modified nucleosides.
In certain embodiments, the 3'-wing of a gapmer comprises at least
four non-bicyclic modified nucleosides. In certain embodiments, the
3'-wing of a gapmer comprises at least one 2'-substituted
nucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one 2'-MOE nucleoside. In certain embodiments,
the 3'-wing of a gapmer comprises at least one 2'-OMe nucleoside.
In certain embodiments, each nucleoside of the 3'-wing of a gapmer
is a non-bicyclic modified nucleoside. In certain embodiments, each
nucleoside of the 3'-wing of a gapmer is a 2'-substituted
nucleoside. In certain embodiments, each nucleoside of the 3'-wing
of a gapmer is a 2'-MOE nucleoside. In certain embodiments, each
nucleoside of the 3'-wing of a gapmer is a 2'-OMe nucleoside.
[0464] In certain embodiments, the 3'-wing of a gapmer comprises at
least one 2'-deoxynucleoside. In certain embodiments, each
nucleoside of the 3'-wing of a gapmer is a 2'-deoxynucleoside. In a
certain embodiments, the 3'-wing of a gapmer comprises at least one
ribonucleoside. In certain embodiments, each nucleoside of the
3'-wing of a gapmer is a ribonucleoside. In certain embodiments,
one, more than one, or each of the nucleosides of the 5'-wing is an
RNA-like nucleoside.
[0465] In certain embodiments, the 3'-wing of a gapmer comprises at
least one bicyclic nucleoside and at least one non-bicyclic
modified nucleoside. In certain embodiments, the 3'-wing of a
gapmer comprises at least one bicyclic nucleoside and at least one
2'-substituted nucleoside. In certain embodiments, the 3'-wing of a
gapmer comprises at least one bicyclic nucleoside and at least one
2'-MOE nucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one bicyclic nucleoside and at least one 2'-OMe
nucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one bicyclic nucleoside and at least one
2'-deoxynucleoside.
[0466] In certain embodiments, the 3'-wing of a gapmer comprises at
least one constrained ethyl nucleoside and at least one
non-bicyclic modified nucleoside. In certain embodiments, the
3'-wing of a gapmer comprises at least one constrained ethyl
nucleoside and at least one 2'-substituted nucleoside. In certain
embodiments, the 3'-wing of a gapmer comprises at least one
constrained ethyl nucleoside and at least one 2'-MOE nucleoside. In
certain embodiments, the 3'-wing of a gapmer comprises at least one
constrained ethyl nucleoside and at least one 2'-OMe nucleoside. In
certain embodiments, the 3'-wing of a gapmer comprises at least one
constrained ethyl nucleoside and at least one
2'-deoxynucleoside.
[0467] In certain embodiments, the 3'-wing of a gapmer comprises at
least one LNA nucleoside and at least one non-bicyclic modified
nucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one LNA nucleoside and at least one
2'-substituted nucleoside. In certain embodiments, the 3'-wing of a
gapmer comprises at least one LNA nucleoside and at least one
2'-MOE nucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one LNA nucleoside and at least one 2'-OMe
nucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one LNA nucleoside and at least one
2'-deoxynucleoside.
[0468] In certain embodiments, the 3'-wing of a gapmer comprises at
least one bicyclic nucleoside, at least one non-bicyclic modified
nucleoside, and at least one 2'-deoxynucleoside. In certain
embodiments, the 3'-wing of a gapmer comprises at least one
constrained ethyl nucleoside, at least one non-bicyclic modified
nucleoside, and at least one 2'-deoxynucleoside. In certain
embodiments, the 3'-wing of a gapmer comprises at least one LNA
nucleoside, at least one non-bicyclic modified nucleoside, and at
least one 2'-deoxynucleoside.
[0469] In certain embodiments, the 3'-wing of a gapmer comprises at
least one bicyclic nucleoside, at least one 2'-substituted
nucleoside, and at least one 2'-deoxynucleoside. In certain
embodiments, the 3'-wing of a gapmer comprises at least one
constrained ethyl nucleoside, at least one 2'-substituted
nucleoside, and at least one 2'-deoxynucleoside. In certain
embodiments, the 3'-wing of a gapmer comprises at least one LNA
nucleoside, at least one 2'-substituted nucleoside, and at least
one 2'-deoxynucleoside.
[0470] In certain embodiments, the 3'-wing of a gapmer comprises at
least one bicyclic nucleoside, at least one 2'-MOE nucleoside, and
at least one 2'-deoxynucleoside. In certain embodiments, the
3'-wing of a gapmer comprises at least one constrained ethyl
nucleoside, at least one 2'-MOE nucleoside, and at least one
2'-deoxynucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one LNA nucleoside, at least one 2'-MOE
nucleoside, and at least one 2'-deoxynucleoside.
[0471] In certain embodiments, the 3'-wing of a gapmer comprises at
least one bicyclic nucleoside, at least one 2'-OMe nucleoside, and
at least one 2'-deoxynucleoside. In certain embodiments, the
3'-wing of a gapmer comprises at least one constrained ethyl
nucleoside, at least one 2'-OMe nucleoside, and at least one
2'-deoxynucleoside. In certain embodiments, the 3'-wing of a gapmer
comprises at least one LNA nucleoside, at least one 2'-OMe
nucleoside, and at least one 2'-deoxynucleoside.
[0472] In certain embodiments, the 3'-wing of a gapmer has a
nucleoside motif selected from among the following: ABB, ABAA,
AAABAA, AAAAABAA, AABAA, AAAABAA, AAABAA, ABAB, AAAAA, AAABB,
AAAAAAAA, AAAAAAA, AAAAAA, AAAAB, AAAA, AAA, AA, AB, ABBB, ABAB,
AABBB; wherein each A is a modified nucleoside of a first type,
each B is a modified nucleoside of a second type. In certain
embodiments, an oligonucleotide comprises any 3'-wing motif
provided herein. In certain such embodiments, the oligonucleotide
is a 3'-hemimer (does not comprise a 5'-wing). In certain
embodiments, such an oligonucleotide is a gapmer. In certain such
embodiments, the 5'-wing of the gapmer may comprise any nucleoside
motif.
[0473] In certain embodiments, the 3'-wing of a gapmer has a
nucleoside motif selected from among the following: BBA, AAB, AAA,
BBB, BBAA, AABB, WBBA, WAAB, BBBA, BBBBA, BBBB, BBBBBA, ABBBBB,
BBAAA, AABBB, BBBAA, BBBBA, BBBBB, BABA, AAAAA, BBAAAA, AABBBB,
BAAAA, and ABBBB, wherein each A is a modified nucleoside of a
first type, each B is a modified nucleoside of a second type, and
each W is a modified nucleoside of either the first type, the
second type or a third type.
[0474] In certain embodiments, the 3'-wing of a gapmer has a
nucleoside motif selected from among the following: ABB; AAABAA;
AABAA; AAAABAA; AAAAA; AAABB; AAAAAAAA; AAAAAAA; AAAAAA; AAAAB; AB;
ABBB; and ABAB, wherein each A is a modified nucleoside of a first
type, each B is a modified nucleoside of a second type, and each W
is a modified nucleoside of either the first type, the second type
or a third type.
[0475] In certain embodiments, the 3'-wing of a gapmer has a sugar
motif selected from among those listed in the following
non-limiting tables:
TABLE-US-00003 TABLE 3 Certain 3'-Wing Sugar Motifs Certain 3'-Wing
Sugar Motifs AAAAA ABCBB BABCC BCBBA CBACC AAAAB ABCBC BACAA BCBBB
CBBAA AAAAC ABCCA BACAB BCBBC CBBAB AAABA ABCCB BACAC BCBCA CBBAC
AAABB ABCCC BACBA BCBCB CBBBA AAABC ACAAA BACBB BCBCC CBBBB AAACA
ACAAB BACBC BCCAA CBBBC AAACB ACAAC BACCA BCCAB CBBCA AAACC ACABA
BACCB BCCAC CBBCB AABAA ACABB BACCC BCCBA CBBCC AABAB ACABC BBAAA
BCCBB CBCAA AABAC ACACA BBAAB BCCBC CBCAB AABBA ACACB BBAAC BCCCA
CBCAC AABBB ACACC BBABA BCCCB CBCBA AABBC ACBAA BBABB BCCCC CBCBB
AABCA ACBAB BBABC CAAAA CBCBC AABCB ACBAC BBACA CAAAB CBCCA AABCC
ACBBA BBACB CAAAC CBCCB AACAA ACBBB BBACC CAABA CBCCC AACAB ACBBC
BBBAA CAABB CCAAA AACAC ACBCA BBBAB CAABC CCAAB AACBA ACBCB BBBAC
CAACA CCAAC AACBB ACBCC BBBBA CAACB CCABA AACBC ACCAA BBBBB CAACC
CCABB AACCA ACCAB BBBBC CABAA CCABC AACCB ACCAC BBBCA CABAB CCACA
AACCC ACCBA BBBCB CABAC CCACB ABAAA ACCBB BBBCC CABBA CCACC ABAAB
ACCBC BBCAA CABBB CCBAA ABAAC ACCCA BBCAB CABBC CCBAB ABABA ACCCB
BBCAC CABCA CCBAC ABABB ACCCC BBCBA CABCB CCBBA ABABC BAAAA BBCBB
CABCC CCBBB ABACA BAAAB BBCBC CACAA CCBBC ABACB BAAAC BBCCA CACAB
CCBCA ABACC BAABA BBCCB CACAC CCBCB ABBAA BAABB BBCCC CACBA CCBCC
ABBAB BAABC BCAAA CACBB CCCAA ABBAC BAACA BCAAB CACBC CCCAB ABBBA
BAACB BCAAC CACCA CCCAC ABBBB BAACC BCABA CACCB CCCBA ABBBC BABAA
BCABB CACCC CCCBB ABBCA BABAB BCABC CBAAA CCCBC ABBCB BABAC BCACA
CBAAB CCCCA ABBCC BABBA BCACB CBAAC CCCCB ABCAA BABBB BCACC CBABA
CCCCC ABCAB BABBC BCBAA CBABB ABCAC BABCA BCBAB CBABC ABCBA BABCB
BCBAC CBACA
TABLE-US-00004 TABLE 4 Certain 3'-Wing Sugar Motifs Certain 3'-Wing
Sugar Motifs AAAAA BABC CBAB ABBB BAA AAAAB BACA CBAC BAAA BAB
AAABA BACB CBBA BAAB BBA AAABB BACC CBBB BABA BBB AABAA BBAA CBBC
BABB AA AABAB BBAB CBCA BBAA AB AABBA BBAC CBCB BBAB AC AABBB BBBA
CBCC BBBA BA ABAAA BBBB CCAA BBBB BB ABAAB BBBC CCAB AAA BC ABABA
BBCA CCAC AAB CA ABABB BBCB CCBA AAC CB ABBAA BBCC CCBB ABA CC
ABBAB BCAA CCBC ABB AA ABBBA BCAB CCCA ABC AB ABBBB BCAC CCCB ACA
BA BAAAA ABCB BCBA ACB BAAAB ABCC BCBB ACC BAABA ACAA BCBC BAA
BAABB ACAB BCCA BAB BABAA ACAC BCCB BAC BABAB ACBA BCCC BBA BABBA
ACBB CAAA BBB BABBB ACBC CAAB BBC BBAAA ACCA CAAC BCA BBAAB ACCB
CABA BCB BBABA ACCC CABB BCC BBABB BAAA CABC CAA BBBAA BAAB CACA
CAB BBBAB BAAC CACB CAC BBBBA BABA CACC CBA BBBBB BABB CBAA CBB
AAAA AACC CCCC CBC AAAB ABAA AAAA CCA AAAC ABAB AAAB CCB AABA ABAC
AABA CCC AABB ABBA AABB AAA AABC ABBB ABAA AAB AACA ABBC ABAB ABA
AACB ABCA ABBA ABB
[0476] In certain embodiments, each A, each B, and each C located
at the 5'-most 3'-wing region nucleoside is a modified nucleoside.
For example, in certain embodiments the 3'-wing motif is selected
from among ABB, BBB, and CBB, wherein the underlined nucleoside
represents the 5'-most 3'-wing region nucleoside and wherein the
underlined nucleoside is a modified nucleoside.
[0477] In certain embodiments, each A comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each A
comprises a modified sugar moiety. In certain embodiments, each A
comprises a 2'-substituted sugar moiety. In certain embodiments,
each A comprises a 2'-substituted sugar moiety selected from among
F, ara-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each A comprises a bicyclic sugar moiety. In certain
embodiments, each A comprises a bicyclic sugar moiety selected from
among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In
certain embodiments, each A comprises a modified nucleobase. In
certain embodiments, each A comprises a modified nucleobase
selected from among 2-thio-thymidine nucleoside and 5-propyne
uridine nucleoside. In certain embodiments, each A comprises a
5'-substituted sugar moiety selected from among 5'-Me DNA, and
5'-(R)-Me DNA.
[0478] In certain embodiments, each B comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each B
comprises a modified sugar moiety. In certain embodiments, each B
comprises a 2'-substituted sugar moiety. In certain embodiments,
each B comprises a 2'-substituted sugar moiety selected from among
F, (ara)-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each B comprises a bicyclic sugar moiety. In certain
embodiments, each B comprises a bicyclic sugar moiety selected from
among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In
certain embodiments, each B comprises a modified nucleobase. In
certain embodiments, each B comprises a modified nucleobase
selected from among 2-thio-thymidine nucleoside and 5-propyne
urindine nucleoside. In certain embodiments, each B comprises an
HNA. In certain embodiments, each B comprises an F-HNA. In certain
embodiments, each B comprises a 5'-substituted sugar moiety
selected from among 5'-Me DNA, and 5'-(R)-Me DNA.
[0479] In certain embodiments, each A comprises a 2'-substituted
sugar moiety selected from among F, ara-F, OCH.sub.3 and
O(CH.sub.2).sub.2--OCH.sub.3 and each B comprises a bicyclic sugar
moiety selected from among cEt, cMOE, LNA, .alpha.-L-LNA, ENA and
2'-thio LNA. In certain embodiments, each A comprises
O(CH.sub.2).sub.2--OCH.sub.3 and each B comprises cEt.
[0480] In certain embodiments, each C comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each C
comprises a modified sugar moiety. In certain embodiments, each C
comprises a 2'-substituted sugar moiety. In certain embodiments,
each C comprises a 2'-substituted sugar moiety selected from among
F, (ara)-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each C comprises a 5'-substituted sugar moiety. In
certain embodiments, each C comprises a 5'-substituted sugar moiety
selected from among 5'-Me, and 5'-(R)-Me. In certain embodiments,
each C comprises a bicyclic sugar moiety. In certain embodiments,
each C comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each C comprises a modified nucleobase. In certain
embodiments, each C comprises a modified nucleobase selected from
among 2-thio-thymidine and 5-propyne uridine. In certain
embodiments, each C comprises a 2-thio-thymidine nucleoside. In
certain embodiments, each C comprises an HNA. In certain
embodiments, each C comprises an F-HNA.
[0481] vi. Certain Central Regions (Gaps)
[0482] In certain embodiments, the gap of a gapmer consists of 6 to
20 linked nucleosides. In certain embodiments, the gap of a gapmer
consists of 6 to 15 linked nucleosides. In certain embodiments, the
gap of a gapmer consists of 6 to 12 linked nucleosides. In certain
embodiments, the gap of a gapmer consists of 6 to 10 linked
nucleosides. In certain embodiments, the gap of a gapmer consists
of 6 to 9 linked nucleosides. In certain embodiments, the gap of a
gapmer consists of 6 to 8 linked nucleosides. In certain
embodiments, the gap of a gapmer consists of 6 or 7 linked
nucleosides. In certain embodiments, the gap of a gapmer consists
of 7 to 10 linked nucleosides. In certain embodiments, the gap of a
gapmer consists of 7 to 9 linked nucleosides. In certain
embodiments, the gap of a gapmer consists of 7 or 8 linked
nucleosides. In certain embodiments, the gap of a gapmer consists
of 8 to 10 linked nucleosides. In certain embodiments, the gap of a
gapmer consists of 8 or 9 linked nucleosides. In certain
embodiments, the gap of a gapmer consists of 6 linked nucleosides.
In certain embodiments, the gap of a gapmer consists of 7 linked
nucleosides. In certain embodiments, the gap of a gapmer consists
of 8 linked nucleosides. In certain embodiments, the gap of a
gapmer consists of 9 linked nucleosides. In certain embodiments,
the gap of a gapmer consists of 10 linked nucleosides. In certain
embodiments, the gap of a gapmer consists of 11 linked nucleosides.
In certain embodiments, the gap of a gapmer consists of 12 linked
nucleosides.
[0483] In certain embodiments, each nucleoside of the gap of a
gapmer is a 2'-deoxynucleoside. In certain embodiments, the gap
comprises one or more modified nucleosides. In certain embodiments,
each nucleoside of the gap of a gapmer is a 2'-deoxynucleoside or
is a modified nucleoside that is "DNA-like." In such embodiments,
"DNA-like" means that the nucleoside has similar characteristics to
DNA, such that a duplex comprising the gapmer and an RNA molecule
is capable of activating RNase H. For example, under certain
conditions, 2'-(ara)-F have been shown to support RNase H
activation, and thus is DNA-like. In certain embodiments, one or
more nucleosides of the gap of a gapmer is not a 2'-deoxynucleoside
and is not DNA-like. In certain such embodiments, the gapmer
nonetheless supports RNase H activation (e.g., by virtue of the
number or placement of the non-DNA nucleosides).
[0484] In certain embodiments, gaps comprise a stretch of
unmodified 2'-deoxynucleoside interrupted by one or more modified
nucleosides, thus resulting in three sub-regions (two stretches of
one or more 2'-deoxynucleosides and a stretch of one or more
interrupting modified nucleosides). In certain embodiments, no
stretch of unmodified 2'-deoxynucleosides is longer than 5, 6, or 7
nucleosides. In certain embodiments, such short stretches is
achieved by using short gap regions. In certain embodiments, short
stretches are achieved by interrupting a longer gap region.
[0485] In certain embodiments, the gap comprises one or more
modified nucleosides. In certain embodiments, the gap comprises one
or more modified nucleosides selected from among cEt, FHNA, LNA,
and 2-thio-thymidine. In certain embodiments, the gap comprises one
modified nucleoside. In certain embodiments, the gap comprises a
5'-substituted sugar moiety selected from among 5'-Me, and
5'-(R)-Me. In certain embodiments, the gap comprises two modified
nucleosides. In certain embodiments, the gap comprises three
modified nucleosides. In certain embodiments, the gap comprises
four modified nucleosides. In certain embodiments, the gap
comprises two or more modified nucleosides and each modified
nucleoside is the same. In certain embodiments, the gap comprises
two or more modified nucleosides and each modified nucleoside is
different.
[0486] In certain embodiments, the gap comprises one or more
modified linkages. In certain embodiments, the gap comprises one or
more methyl phosphonate linkages. In certain embodiments the gap
comprises two or more modified linkages. In certain embodiments,
the gap comprises one or more modified linkages and one or more
modified nucleosides. In certain embodiments, the gap comprises one
modified linkage and one modified nucleoside. In certain
embodiments, the gap comprises two modified linkages and two or
more modified nucleosides.
[0487] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DDDDXDDDDD; DDDDDXDDDDD;
DDDXDDDDD; DDDDXDDDDDD; DDDDXDDDD; DDXDDDDDD; DDDXDDDDDD; DXDDDDDD;
DDXDDDDDDD; DDXDDDDD; DDXDDDXDDD; DDDXDDDXDDD; DXDDDXDDD;
DDXDDDXDD; DDXDDDDXDDD; DDXDDDDXDD; DXDDDDXDDD; DDDDXDDD; DDDXDDD;
DXDDDDDDD; DDDDXXDDD; and DXXDXXDXX; wherein each D is an
unmodified deoxynucleoside; and each X is a modified nucleoside or
a substituted sugar moiety.
[0488] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DDDDDDDDD; DXDDDDDDD; DDXDDDDDD;
DDDXDDDDD; DDDDXDDDD; DDDDDXDDD; DDDDDDXDD; DDDDDDDXD; DXXDDDDDD;
DDDDDDXXD; DDXXDDDDD; DDDXXDDDD; DDDDXXDDD; DDDDDXXDD; DXDDDDDXD;
DXDDDDXDD; DXDDDXDDD; DXDDXDDDD; DXDXDDDDD; DDXDDDDXD; DDXDDDXDD;
DDXDDXDDD; DDXDXDDDD; DDDXDDDXD; DDDXDDXDD; DDDXDXDDD; DDDDXDDXD;
DDDDXDXDD; and DDDDDXDXD, wherein each D is an unmodified
deoxynucleoside; and each X is a modified nucleoside or a
substituted sugar moiety.
[0489] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DDDDXDDDD, DXDDDDDDD, DXXDDDDDD,
DDXDDDDDD, DDDXDDDDD, DDDDXDDDD, DDDDDXDDD, DDDDDDXDD, and
DDDDDDDXD, wherein each D is an unmodified deoxynucleoside; and
each X is a modified nucleoside or a substituted sugar moiety.
[0490] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DDDDDDDD, DXDDDDDD, DDXDDDDD,
DDDXDDDD, DDDDXDDD, DDDDDXDD, DDDDDDXD, DXDDDDXD, DXDDDXDD,
DXDDXDDD, DXDXDDDD, DXXDDDDD, DDXXDDDD, DDXDXDDD, DDXDDXDD,
DXDDDDXD, DDDXXDDD, DDDXDXDD, DDDXDDXD, DDDDXXDD, DDDDXDXD, and
DDDDDXXD, wherein each D is an unmodified deoxynucleoside; and each
X is a modified nucleoside or a substituted sugar moiety.
[0491] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DXDDDDD, DDXDDDD, DDDXDDD,
DDDDXDD, DDDDDXD, DXDDDXD, DXDDXDD, DXDXDDD, DXXDDDD, DDXXDDD,
DDXDXDD, DDXDDXD, DDDXXDD, DDDXDXD, and DDDDXXD, wherein each D is
an unmodified deoxynucleoside; and each X is a modified nucleoside
or a substituted sugar moiety.
[0492] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DXDDDD, DDXDDD, DDDXDD, DDDDXD,
DXXDDD, DXDXDD, DXDDXD, DDXXDD, DDXDXD, and DDDXXD, wherein each D
is an unmodified deoxynucleoside; and each X is a modified
nucleoside or a substituted sugar moiety.
[0493] In certain embodiments, the gap comprises a nucleoside motif
selected from among the following: DXDDDD, DDXDDD, DDDXDD, DDDDXD,
DXDDDDD, DDXDDDD, DDDXDDD, DDDDXDD, DDDDDXD, DXDDDDDD, DDXDDDDD,
DDDXDDDD, DDDDXDDD, DDDDDXDD, DDDDDDXD, DXDDDDDDD; DDXDDDDDD,
DDDXDDDDD, DDDDXDDDD, DDDDDXDDD, DDDDDDXDD, DDDDDDDXD, DXDDDDDDDD,
DDXDDDDDDD, DDDXDDDDDD, DDDDXDDDDD, DDDDDXDDDD, DDDDDDXDDD,
DDDDDDDXDD, and DDDDDDDDXD, wherein each D is an unmodified
deoxynucleoside; and each X is a modified nucleoside or a
substituted sugar moiety.
[0494] In certain embodiments, each X comprises an unmodified
2'-deoxyfuranose sugar moiety. In certain embodiments, each X
comprises a modified sugar moiety. In certain embodiments, each X
comprises a 2'-substituted sugar moiety. In certain embodiments,
each X comprises a 2'-substituted sugar moiety selected from among
F, (ara)-F, OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain
embodiments, each X comprises a 5'-substituted sugar moiety. In
certain embodiments, each X comprises a 5'-substituted sugar moiety
selected from among 5'-Me, and 5'-(R)-Me. In certain embodiments,
each X comprises a bicyclic sugar moiety. In certain embodiments,
each X comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each X comprises a modified nucleobase. In certain
embodiments, each X comprises a modified nucleobase selected from
among 2-thio-thymidine and 5-propyne uridine. In certain
embodiments, each X comprises a 2-thio-thymidine nucleoside. In
certain embodiments, each X comprises an HNA. In certain
embodiments, each C comprises an F-HNA. In certain embodiments, X
represents the location of a single differentiating nucleobase.
[0495] vii. Certain Gapmer Motifs
[0496] In certain embodiments, a gapmer comprises a 5'-wing, a gap,
and a 3' wing, wherein the 5'-wing, gap, and 3' wing are
independently selected from among those discussed above. For
example, in certain embodiments, a gapmer has a 5'-wing, a gap, and
a 3'-wing having features selected from among any of those listed
in the tables above and any 5'-wing may be paired with any gap and
any 3'-wing. For example, in certain embodiments, a 5'-wing may
comprise AAABB, a 3'-wing may comprise BBA, and the gap may
comprise DDDDDDD. For example, in certain embodiments, a gapmer has
a 5'-wing, a gap, and a 3'-wing having features selected from among
those listed in the following non-limiting table, wherein each
motif is represented as (5'-wing)-(gap)-(3'-wing), wherein each
number represents the number of linked nucleosides in each portion
of the motif, for example, a 5-10-5 motif would have a 5'-wing
comprising 5 nucleosides, a gap comprising 10 nucleosides, and a
3'-wing comprising 5 nucleosides:
TABLE-US-00005 TABLE 5 Certain Gapmer Sugar Motifs Certain Gapmer
Sugar Motifs 2-10-2 3-10-2 4-10-2 5-10-2 2-10-3 3-10-3 4-10-3
5-10-3 2-10-4 3-10-4 4-10-4 5-10-4 2-10-5 3-10-5 4-10-5 5-10-5
2-9-2 3-9-2 4-9-2 5-9-2 2-9-3 3-9-3 4-9-3 5-9-3 2-9-4 3-9-4 4-9-4
5-9-4 2-9-5 3-9-5 4-9-5 5-9-5 2-11-2 3-11-2 4-11-2 5-11-2 2-11-3
3-11-3 4-11-3 5-11-3 2-11-4 3-11-4 4-11-4 5-11-4 2-11-5 3-11-5
4-11-5 5-11-5 2-8-2 3-8-2 4-8-2 5-8-2 2-8-3 3-8-3 4-8-3 5-8-3 2-8-4
3-8-4 4-8-4 5-8-4 2-8-5 3-8-5 4-8-5 5-8-5
[0497] In certain embodiments, a gapmer comprises a 5'-wing, a gap,
and a 3' wing, wherein the 5'-wing, gap, and 3' wing are
independently selected from among those discussed above. For
example, in certain embodiments, a gapmer has a 5'-wing, a gap, and
a 3'-wing having features selected from among those listed in the
following non-limiting tables:
TABLE-US-00006 TABLE 6 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region ADDA DDDDDD ABB ABBA
DDDADDDD ABAA AAAAAAA DDDDDDDDDDD AAA AAAAABB DDDDDDDD BBAAAAA ABB
DDDDADDDD ABB ABB DDDDBDDDD BBA ABB DDDDDDDDD BBA AABAA DDDDDDDDD
AABAA ABB DDDDDD AABAA AAABAA DDDDDDDDD AAABAA AAABAA DDDDDDDDD AAB
ABAB DDDDDDDDD ABAB AAABB DDDDDDD BBA ABADB DDDDDDD BBA ABA
DBDDDDDDD BBA ABA DADDDDDDD BBA ABAB DDDDDDDD BBA AA DDDDDDDD
BBBBBBBB ABB DDDDDD ABADB AAAAB DDDDDDD BAAAA ABBB DDDDDDDDD AB AB
DDDDDDDDD BBBA ABBB DDDDDDDDD BBBA AB DDDDDDDD ABA ABB DDDDWDDDD
BBA AAABB DDDWDDD BBAAA ABB DDDDWWDDD BBA ABADB DDDDDDD BBA ABBDC
DDDDDDD BBA ABBDDC DDDDDD BBA ABBDCC DDDDDD BBA ABB DWWDWWDWW BBA
ABB DWDDDDDDD BBA ABB DDWDDDDDD BBA ABB DWWDDDDDD BBA AAABB
DDWDDDDDD AA BB DDWDWDDDD BBABBBB ABB DDDD(.sup.ND)DDDD BBA AAABB
DDD(.sup.ND)DDD BBAAA ABB DDDD(.sup.ND)(.sup.ND)DDD BBA ABB
D(.sup.ND)(.sup.ND)D(.sup.ND)(.sup.ND)D(.sup.ND)(.sup.ND) BBA ABB
D(.sup.ND)DDDDDDD BBA ABB DD(.sup.ND)DDDDDD BBA ABB
D(.sup.ND)(.sup.ND)DDDDDD BBA AAABB DD(.sup.ND)DDDDDD AA BB
DD(.sup.ND)D(.sup.ND)DDDD BBABBBB ABAB DDDDDDDDD BABA
TABLE-US-00007 TABLE 7 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region ABBW DDDDDDDD BBA ABB
DWDDDDDDD BBA ABB DDWDDDDDD BBA ABB DDDWDDDDD BBA ABB DDDDWDDDD BBA
ABB DDDDDWDDD BBA ABB DDDDDDWDD BBA ABB DDDDDDDWD BBA ABB DDDDDDDD
WBBA ABBWW DDDDDDD BBA ABB DWWDDDDDD BBA ABB DDWWDDDDD BBA ABB
DDDWWDDDD BBA ABB DDDDWWDDD BBA ABB DDDDDWWDD BBA ABB DDDDDDWWD BBA
ABB DDDDDDD WWBBA ABBW DDDDDDD WBBA ABBW DDDDDDWD BBA ABBW DDDDDWDD
BBA ABBW DDDDWDDD BBA ABBW DDDWDDDD BBA ABBW DDWDDDDD BBA ABBW
DWDDDDDD BBA ABB DWDDDDDD WBBA ABB DWDDDDDWD BBA ABB DWDDDDWDD BBA
ABB DWDDDWDDD BBA ABB DWDDWDDDD BBA ABB DWDWDDDDD BBA ABB DDWDDDDD
WBBA ABB DDWDDDDWD BBA ABB DDWDDDWDD BBA ABB DDWDDWDDD BBA ABB
DDWDWDDDD BBA ABB DDWWDDDDD BBA ABB DDDWDDDD WBBA ABB DDDWDDDWD BBA
ABB DDDWDDWDD BBA ABB DDDWDWDDD BBA ABB DDDWWDDDD BBA ABB DDDDWDDD
WBBA ABB DDDDWDDWD BBA ABB DDDDWDWDD BBA ABB DDDDWWDDD BBA ABB
DDDDDWDD WBBA ABB DDDDDWDWD BBA ABB DDDDDWWDD BBA ABB DDDDDDWD
WBBA
TABLE-US-00008 TABLE 8 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region ABBB DDDDDDDD BBA ABB
DBDDDDDDD BBA ABB DDBDDDDDD BBA ABB DDDBDDDDD BBA ABB DDDDBDDDD BBA
ABB DDDDDBDDD BBA ABB DDDDDDBDD BBA ABB DDDDDDDBD BBA ABB DDDDDDDD
BBBA ABBBB DDDDDDD BBA ABB DBBDDDDDD BBA ABB DDBBDDDDD BBA ABB
DDDBBDDDD BBA ABB DDDDBBDDD BBA ABB DDDDDBBDD BBA ABB DDDDDDBBD BBA
ABB DDDDDDD BBBBA ABBB DDDDDDD BBBA ABB DDDDDDBD BBA ABBB DDDDDBDD
BBA ABBB DDDDBDDD BBA ABBB DDDBDDDD BBA ABBB DDBDDDDD BBA ABBB
DBDDDDDD BBA ABB DBDDDDDD BBBA ABB DBDDDDDBD BBA ABB DBDDDDBDD BBA
ABB DBDDDBDDD BBA ABB DBDDBDDDD BBA ABB DBDBDDDDD BBA ABB DDBDDDDD
BBBA ABB DDBDDDDBD BBA ABB DDBDDDBDD BBA ABB DDBDDBDDD BBA ABB
DDBDBDDDD BBA ABB DDBBDDDDD BBA ABB DDDBDDDD BBBA ABB DDDBDDDBD BBA
ABB DDDBDDBDD BBA ABB DDDBDBDDD BBA ABB DDDBBDDDD BBA ABB DDDDBDDD
BBBA ABB DDDDBDDBD BBA ABB DDDDBDBDD BBA ABB DDDDBBDDD BBA ABB
DDDDDBDD BBBA ABB DDDDDBDBD BBA ABB DDDDDBBDD BBA ABB DDDDDDBD
BBBA
TABLE-US-00009 TABLE 9 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region ABB DDDDDDDDD BBA AB
DBDDDDDDDD BBA AB DDBDDDDDDD BBA AB DDDBDDDDDD BBA AB DDDDBDDDDD
BBA AB DDDDDBDDDD BBA AB DDDDDDBDDD BBA AB DDDDDDDBDD BBA AB
DDDDDDDDBD BBA AB DDDDDDDDD BBBA ABBB DDDDDDDD BBA AB DBBDDDDDDD
BBA AB DDBBDDDDDD BBA AB DDDBBDDDDD BBA AB DDDDBBDDDD BBA AB
DDDDDBBDDD BBA AB DDDDDDBBDD BBA AB DDDDDDDBBD BBA AB DDDDDDDD
BBBBA ABBBB DDDDDDD BBA AB DBBBDDDDDD BBA AB DDBBBDDDDD BBA AB
DDDBBBDDDD BBA AB DDDDBBBDDD BBA AB DDDDDBBBDD BBA AB DDDDDDBBBD
BBA AB DDDDDDD BBBBBA AB DDDDDDDDD BBBA AB DDDDDDDBD BBBA AB
DDDDDBDD BBBA AB DDDDBDDD BBBA AB DDDBDDDD BBBA AB DDBDDDDD BBBA AB
DBDDDDDD BBBA AB DDDDDBD BBBBA AB DDDDBDD BBBBA AB DDDBDDD BBBBA AB
DDBDDDD BBBBA AB DBDDDDD BBBBA AB DDDDBD BBBBBA AB DDDBDD BBBBBA AB
DDBDDD BBBBBA AB DBDDDD BBBBBA
TABLE-US-00010 TABLE 10 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region AAAAAA DDDDDDD BABA AAAAAB
DDDDDDD BABA AAAABA DDDDDDD BABA AAABAA DDDDDDD BABA AABAAA DDDDDDD
BABA ABAAAA DDDDDDD BABA BAAAAA DDDDDDD BABA ABAAAB DDDDDDD BABA
ABAABA DDDDDDD BABA ABABAA DDDDDDD BABA ABBAAA DDDDDDD BABA AABAAB
DDDDDDD BABA AABABA DDDDDDD BABA AABBAA DDDDDDD BABA AAABAB DDDDDDD
BABA AAABBA DDDDDDD BABA AAAABB DDDDDDD BABA BAAAAB DDDDDDD BABA
BAAABA DDDDDDD BABA BAABAA DDDDDDD BABA BABAAA DDDDDDD BABA BBAAAA
DDDDDDD BABA BBBAAA DDDDDDD BABA BBABAA DDDDDDD BABA BBAABA DDDDDDD
BABA BBAAAB DDDDDDD BABA ABABAB DDDDDDD BABA BBBBAA DDDDDDD BABA
BBBABA DDDDDDD BABA BBBAAB DDDDDDD BABA BBBBBA DDDDDDD BABA BBBBAB
DDDDDDD BABA AAABBB DDDDDDD BABA AABABB DDDDDDD BABA ABAABB DDDDDDD
BABA BAAABB DDDDDDD BABA AABBBB DDDDDDD BABA ABABBB DDDDDDD BABA
BAABBB DDDDDDD BABA ABBBBB DDDDDDD BABA BABBBB DDDDDDD BABA BBBBBB
DDDDDDD BABA
TABLE-US-00011 TABLE 11 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region AAAAA DDDDDDD AAAAA AAAAB
DDDDDDD AAAAA AAABA DDDDDDD AAAAA AAABB DDDDDDD AAAAA AABAA DDDDDDD
AAAAA AABAB DDDDDDD AAAAA AABBA DDDDDDD AAAAA AABBB DDDDDDD AAAAA
ABAAA DDDDDDD AAAAA ABAAB DDDDDDD AAAAA ABABA DDDDDDD AAAAA ABABB
DDDDDDD AAAAA ABBAA DDDDDDD AAAAA ABBAB DDDDDDD AAAAA ABBBA DDDDDDD
AAAAA ABBBB DDDDDDD AAAAA BAAAA DDDDDDD AAAAA BAAAB DDDDDDD AAAAA
BAABA DDDDDDD AAAAA BAABB DDDDDDD AAAAA BABAA DDDDDDD AAAAA BABAB
DDDDDDD AAAAA BABBA DDDDDDD AAAAA BABBB DDDDDDD AAAAA BBAAA DDDDDDD
AAAAA BBAAB DDDDDDD AAAAA BBABA DDDDDDD AAAAA BBABB DDDDDDD AAAAA
BBBAA DDDDDDD AAAAA BBBAB DDDDDDD AAAAA BBBBA DDDDDDD AAAAA BBBBB
DDDDDDD AAAAA AAAAA DDDDDDD BAAAA AAAAB DDDDDDD BAAAA AAABA DDDDDDD
BAAAA AAABB DDDDDDD BAAAA AABAA DDDDDDD BAAAA AABAB DDDDDDD BAAAA
AABBA DDDDDDD BAAAA AABBB DDDDDDD BAAAA ABAAA DDDDDDD BAAAA ABAAB
DDDDDDD BAAAA ABABA DDDDDDD BAAAA ABABB DDDDDDD BAAAA ABBAA DDDDDDD
BAAAA ABBAB DDDDDDD BAAAA ABBBA DDDDDDD BAAAA ABBBB DDDDDDD BAAAA
BAAAA DDDDDDD BAAAA BAAAB DDDDDDD BAAAA BAABA DDDDDDD BAAAA BAABB
DDDDDDD BAAAA BABAA DDDDDDD BAAAA BABAB DDDDDDD BAAAA BABBA DDDDDDD
BAAAA BABBB DDDDDDD BAAAA BBAAA DDDDDDD BAAAA BBAAB DDDDDDD BAAAA
BBABA DDDDDDD BAAAA BBABB DDDDDDD BAAAA BBBAA DDDDDDD BAAAA BBBAB
DDDDDDD BAAAA BBBBA DDDDDDD BAAAA BBBBB DDDDDDD BAAAA AAAAA DDDDDDD
BBAAA AAAAB DDDDDDD BBAAA AAABA DDDDDDD BBAAA AAABB DDDDDDD BBAAA
AABAA DDDDDDD BBAAA AABAB DDDDDDD BBAAA AABBA DDDDDDD BBAAA AABBB
DDDDDDD BBAAA ABAAA DDDDDDD BBAAA ABAAB DDDDDDD BBAAA ABABA DDDDDDD
BBAAA ABABB DDDDDDD BBAAA ABBAA DDDDDDD BBAAA ABBAB DDDDDDD BBAAA
ABBBA DDDDDDD BBAAA ABBBB DDDDDDD BBAAA BAAAA DDDDDDD BBAAA BAAAB
DDDDDDD BBAAA BAABA DDDDDDD BBAAA BAABB DDDDDDD BBAAA BABAA DDDDDDD
BBAAA BABAB DDDDDDD BBAAA BABBA DDDDDDD BBAAA BABBB DDDDDDD BBAAA
BBAAA DDDDDDD BBAAA BBAAB DDDDDDD BBAAA BBABA DDDDDDD BBAAA BBABB
DDDDDDD BBAAA BBBAA DDDDDDD BBAAA BBBAB DDDDDDD BBAAA BBBBA DDDDDDD
BBAAA BBBBB DDDDDDD BBAAA AAAAA DDDDDDD BBBAA AAAAB DDDDDDD BBBAA
AAABA DDDDDDD BBBAA AAABB DDDDDDD BBBAA AABAA DDDDDDD BBBAA AABAB
DDDDDDD BBBAA AABBA DDDDDDD BBBAA AABBB DDDDDDD BBBAA ABAAA DDDDDDD
BBBAA ABAAB DDDDDDD BBBAA ABABA DDDDDDD BBBAA ABABB DDDDDDD BBBAA
ABBAA DDDDDDD BBBAA ABBAB DDDDDDD BBBAA ABBBA DDDDDDD BBBAA ABBBB
DDDDDDD BBBAA BAAAA DDDDDDD BBBAA BAAAB DDDDDDD BBBAA BAABA DDDDDDD
BBBAA BAABB DDDDDDD BBBAA BABAA DDDDDDD BBBAA BABAB DDDDDDD BBBAA
BABBA DDDDDDD BBBAA BABBB DDDDDDD BBBAA BBAAA DDDDDDD BBBAA BBAAB
DDDDDDD BBBAA
BBABA DDDDDDD BBBAA BBABB DDDDDDD BBBAA BBBAA DDDDDDD BBBAA BBBAB
DDDDDDD BBBAA BBBBA DDDDDDD BBBAA BBBBB DDDDDDD BBBAA AAAAA DDDDDDD
BBBBA AAAAB DDDDDDD BBBBA AAABA DDDDDDD BBBBA AAABB DDDDDDD BBBBA
AABAA DDDDDDD BBBBA AABAB DDDDDDD BBBBA AABBA DDDDDDD BBBBA AABBB
DDDDDDD BBBBA ABAAA DDDDDDD BBBBA ABAAB DDDDDDD BBBBA ABABA DDDDDDD
BBBBA ABABB DDDDDDD BBBBA ABBAA DDDDDDD BBBBA ABBAB DDDDDDD BBBBA
ABBBA DDDDDDD BBBBA ABBBB DDDDDDD BBBBA BAAAA DDDDDDD BBBBA BAAAB
DDDDDDD BBBBA BAABA DDDDDDD BBBBA BAABB DDDDDDD BBBBA BABAA DDDDDDD
BBBBA BABAB DDDDDDD BBBBA BABBA DDDDDDD BBBBA BABBB DDDDDDD BBBBA
BBAAA DDDDDDD BBBBA BBAAB DDDDDDD BBBBA BBABA DDDDDDD BBBBA BBABB
DDDDDDD BBBBA BBBAA DDDDDDD BBBBA BBBAB DDDDDDD BBBBA BBBBA DDDDDDD
BBBBA BBBBB DDDDDDD BBBBA AAAAA DDDDDDD BBBBB AAAAB DDDDDDD BBBBB
AAABA DDDDDDD BBBBB AAABB DDDDDDD BBBBB AABAA DDDDDDD BBBBB AABAB
DDDDDDD BBBBB AABBA DDDDDDD BBBBB AABBB DDDDDDD BBBBB ABAAA DDDDDDD
BBBBB ABAAB DDDDDDD BBBBB ABABA DDDDDDD BBBBB ABABB DDDDDDD BBBBB
ABBAA DDDDDDD BBBBB ABBAB DDDDDDD BBBBB ABBBA DDDDDDD BBBBB ABBBB
DDDDDDD BBBBB BAAAA DDDDDDD BBBBB BAAAB DDDDDDD BBBBB BAABA DDDDDDD
BBBBB BAABB DDDDDDD BBBBB BABAA DDDDDDD BBBBB BABAB DDDDDDD BBBBB
BABBA DDDDDDD BBBBB BABBB DDDDDDD BBBBB BBAAA DDDDDDD BBBBB BBAAB
DDDDDDD BBBBB BBABA DDDDDDD BBBBB BBABB DDDDDDD BBBBB BBBAA DDDDDDD
BBBBB BBBAB DDDDDDD BBBBB BBBBA DDDDDDD BBBBB BBBBB DDDDDDD
BBBBB
TABLE-US-00012 TABLE 12 Certain Gapmer Nucleoside Motifs 5'-wing
Central gap 3'-wing region region region AAAW DDDDDDDD BBA AABW
DDDDDDDD BBA ABAW DDDDDDDD BBA ABBW DDDDDDDD BBA BAAW DDDDDDDD BBA
BABW DDDDDDDD BBA BBAW DDDDDDDD BBA BBBW DDDDDDDD BBA ABB DDDDDDDD
WAAA ABB DDDDDDDD WAAB ABB DDDDDDDD WABA ABB DDDDDDDD WABB ABB
DDDDDDDD WBAA ABB DDDDDDDD WBAB ABB DDDDDDDD WBBA ABB DDDDDDDD WBBB
AAAWW DDDDDDD BBA AABWW DDDDDDD BBA ABAWW DDDDDDD BBA ABBWW DDDDDDD
BBA BAAWW DDDDDDD BBA BABWW DDDDDDD BBA BBAWW DDDDDDD BBA BBBWW
DDDDDDD BBA ABB DDDDDDD WWAAA ABB DDDDDDD WWAAB ABB DDDDDDD WWABA
ABB DDDDDDD WWABB ABB DDDDDDD WWBAA ABB DDDDDDD WWBAB ABB DDDDDDD
WWBBA ABB DDDDDDD WWBBB AAAAW DDDDDDD BBA AAABW DDDDDDD BBA AABAW
DDDDDDD BBA AABBW DDDDDDD BBA ABAAW DDDDDDD BBA ABABW DDDDDDD BBA
ABBAW DDDDDDD BBA ABBBW DDDDDDD BBA BAAAW DDDDDDD BBA BAABW DDDDDDD
BBA BABAW DDDDDDD BBA BABBW DDDDDDD BBA BBAAW DDDDDDD BBA BBABW
DDDDDDD BBA BBBAW DDDDDDD BBA BBBBW DDDDDDD WAAAA ABB DDDDDDD WAAAB
ABB DDDDDDD WAABA ABB DDDDDDD WAABB ABB DDDDDDD WABAA ABB DDDDDDD
WABAB ABB DDDDDDD WABBA ABB DDDDDDD WABBB ABB DDDDDDD WBAAA ABB
DDDDDDD WBAAB ABB DDDDDDD WBABA ABB DDDDDDD WBABB ABB DDDDDDD WBBAA
ABB DDDDDDD WBBAB ABB DDDDDDD WBBBA ABB DDDDDDD WBBBB
[0498] wherein each A is a modified nucleoside of a first type,
each B is a modified nucleoside of a second type and each W is a
modified nucleoside or nucleobase of either the first type, the
second type or a third type, each D is a nucleoside comprising an
unmodified 2' deoxy sugar moiety and unmodified nucleobase, and
.sup.ND is modified nucleoside comprising a modified nucleobase and
an unmodified 2' deoxy sugar moiety.
[0499] In certain embodiments, each A comprises a modified sugar
moiety. In certain embodiments, each A comprises a 2'-substituted
sugar moiety. In certain embodiments, each A comprises a
2'-substituted sugar moiety selected from among F, ara-F, OCH.sub.3
and O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments, each A
comprises a bicyclic sugar moiety. In certain embodiments, each A
comprises a bicyclic sugar moiety selected from among cEt, cMOE,
LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain embodiments,
each A comprises a modified nucleobase. In certain embodiments,
each A comprises a modified nucleobase selected from among
2-thio-thymidine nucleoside and 5-propyne uridine nucleoside. In
certain embodiments, each A comprises an HNA. In certain
embodiments, each A comprises an F-HNA. In certain embodiments,
each A comprises a 5'-substituted sugar moiety selected from among
5'-Me, and 5'-(R)-Me.
[0500] In certain embodiments, each B comprises a modified sugar
moiety. In certain embodiments, each B comprises a 2'-substituted
sugar moiety. In certain embodiments, each B comprises a
2'-substituted sugar moiety selected from among F, (ara)-F,
OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments,
each B comprises a bicyclic sugar moiety. In certain embodiments,
each B comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each B comprises a modified nucleobase. In certain
embodiments, each B comprises a modified nucleobase selected from
among 2-thio-thymidine nucleoside and 5-propyne urindine
nucleoside. In certain embodiments, each B comprises an HNA. In
certain embodiments, each B comprises an F-HNA. In certain
embodiments, each B comprises a 5'-substituted sugar moiety
selected from among 5'-Me, and 5'-(R)-Me.
[0501] In certain embodiments, each C comprises a modified sugar
moiety. In certain embodiments, each C comprises a 2'-substituted
sugar moiety. In certain embodiments, each C comprises a
2'-substituted sugar moiety selected from among F, (ara)-F,
OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments,
each C comprises a 5'-substituted sugar moiety. In certain
embodiments, each C comprises a 5'-substituted sugar moiety
selected from among 5'-Me, and 5'-(R)-Me. In certain embodiments,
each C comprises a bicyclic sugar moiety. In certain embodiments,
each C comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each C comprises a modified nucleobase. In certain
embodiments, each C comprises a modified nucleobase selected from
among 2-thio-thymidine and 5-propyne uridine. In certain
embodiments, each C comprises a 2-thio-thymidine nucleoside. In
certain embodiments, each C comprises an HNA. In certain
embodiments, each C comprises an F-HNA.
[0502] In certain embodiments, each W comprises a modified sugar
moiety. In certain embodiments, each W comprises a 2'-substituted
sugar moiety. In certain embodiments, each W comprises a
2'-substituted sugar moiety selected from among F, (ara)-F,
OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments,
each W comprises a 5'-substituted sugar moiety. In certain
embodiments, each W comprises a 5'-substituted sugar moiety
selected from among 5'-Me, and 5'-(R)-Me. In certain embodiments,
each W comprises a bicyclic sugar moiety. In certain embodiments,
each W comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each W comprises a sugar surrogate. In certain
embodiments, each W comprises a sugar surrogate selected from among
HNA and F--HNA. In certain embodiments, each W comprises a
2-thio-thymidine nucleoside.
[0503] In certain embodiments, at least one of A or B comprises a
bicyclic sugar moiety, and the other comprises a 2'-substituted
sugar moiety. In certain embodiments, one of A or B is an LNA
nucleoside and the other of A or B comprises a 2'-substituted sugar
moiety. In certain embodiments, one of A or B is a cEt nucleoside
and the other of A or B comprises a 2'-substituted sugar moiety. In
certain embodiments, one of A or B is an .alpha.-L-LNA nucleoside
and the other of A or B comprises a 2'-substituted sugar moiety. In
certain embodiments, one of A or B is an LNA nucleoside and the
other of A or B comprises a 2'-MOE sugar moiety. In certain
embodiments, one of A or B is a cEt nucleoside and the other of A
or B comprises a 2'-MOE sugar moiety. In certain embodiments, one
of A or B is an .alpha.-L-LNA nucleoside and the other of A or B
comprises a 2'-MOE sugar moiety. In certain embodiments, one of A
or B is an LNA nucleoside and the other of A or B comprises a 2'-F
sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside and the other of A or B comprises a 2'-F sugar moiety.
In certain embodiments, one of A or B is an .alpha.-L-LNA
nucleoside and the other of A or B comprises a 2'-F sugar moiety.
In certain embodiments, one of A or B is an LNA nucleoside and the
other of A or B comprises a 2'-(ara)-F sugar moiety. In certain
embodiments, one of A or B is a cEt nucleoside and the other of A
or B comprises a 2'-(ara)-F sugar moiety. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside and the other of A or
B comprises a 2'-(ara)-F sugar moiety.
[0504] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-substituted sugar moiety. In certain
embodiments, A is an LNA nucleoside and B comprises a
2'-substituted sugar moiety. In certain embodiments, A is a cEt
nucleoside and B comprises a 2'-substituted sugar moiety. In
certain embodiments, A is an .alpha.-L-LNA nucleoside and B
comprises a 2'-substituted sugar moiety.
[0505] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-MOE sugar moiety. In certain embodiments, A is
an LNA nucleoside and B comprises a 2'-MOE sugar moiety. In certain
embodiments, A is a cEt nucleoside and B comprises a 2'-MOE sugar
moiety. In certain embodiments, A is an .alpha.-L-LNA nucleoside
and B comprises a 2'-MOE sugar moiety.
[0506] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-F sugar moiety. In certain embodiments, A is
an LNA nucleoside and B comprises a 2'-F sugar moiety. In certain
embodiments, A is a cEt nucleoside and B comprises a 2'-F sugar
moiety. In certain embodiments, A is an .alpha.-L-LNA nucleoside
and B comprises a 2'-F sugar moiety.
[0507] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-(ara)-F sugar moiety. In certain embodiments,
A is an LNA nucleoside and B comprises a 2'-(ara)-F sugar moiety.
In certain embodiments, A is a cEt nucleoside and B comprises a
2'-(ara)-F sugar moiety. In certain embodiments, A is an
.alpha.-L-LNA nucleoside and B comprises a 2'-(ara)-F sugar
moiety.
[0508] In certain embodiments, B comprises a bicyclic sugar moiety,
and A comprises a 2'-MOE sugar moiety. In certain embodiments, B is
an LNA nucleoside and A comprises a 2'-MOE sugar moiety. In certain
embodiments, B is a cEt nucleoside and A comprises a 2'-MOE sugar
moiety. In certain embodiments, B is an .alpha.-L-LNA nucleoside
and A comprises a 2'-MOE sugar moiety.
[0509] In certain embodiments, B comprises a bicyclic sugar moiety,
and A comprises a 2'-F sugar moiety. In certain embodiments, B is
an LNA nucleoside and A comprises a 2'-F sugar moiety. In certain
embodiments, B is a cEt nucleoside and A comprises a 2'-F sugar
moiety. In certain embodiments, B is an .alpha.-L-LNA nucleoside
and A comprises a 2'-F sugar moiety.
[0510] In certain embodiments, B comprises a bicyclic sugar moiety,
and A comprises a 2'-(ara)-F sugar moiety. In certain embodiments,
B is an LNA nucleoside and A comprises a 2'-(ara)-F sugar moiety.
In certain embodiments, B is a cEt nucleoside and A comprises a
2'-(ara)-F sugar moiety. In certain embodiments, B is an
.alpha.-L-LNA nucleoside and A comprises a 2'-(ara)-F sugar
moiety.
[0511] In certain embodiments, at least one of A or B comprises a
bicyclic sugar moiety, another of A or B comprises a 2'-substituted
sugar moiety and W comprises a modified nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-substituted sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-substituted sugar
moiety, and C comprises a modified nucleobase. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-substituted sugar moiety, and W comprises
a modified nucleobase.
[0512] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a modified nucleobase. In certain embodiments, one
of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a modified nucleobase. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a modified nucleobase.
[0513] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a modified nucleobase. In certain embodiments, one of A
or B is an LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a modified nucleobase. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a modified nucleobase.
[0514] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a modified nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a modified nucleobase. In certain embodiments, one
of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a modified
nucleobase.
[0515] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-substituted sugar
moiety, and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-substituted sugar moiety, and W comprises a
2-thio-thymidine nucleobase. In certain embodiments, one of A or B
is a cEt nucleoside, another of A or B comprises a 2'-substituted
sugar moiety, and W comprises a 2-thio-thymidine nucleobase. In
certain embodiments, one of A or B is an .alpha.-L-LNA nucleoside,
another of A or B comprises a 2'-substituted sugar moiety, and W
comprises a 2-thio-thymidine nucleobase.
[0516] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 2-thio-thymidine
nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a 2-thio-thymidine nucleobase. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 2-thio-thymidine
nucleobase.
[0517] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 2-thio-thymidine nucleobase. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-F sugar moiety, and W comprises a 2-thio-thymidine nucleobase.
In certain embodiments, one of A or B is a cEt nucleoside, another
of A or B comprises a 2'-F sugar moiety, and W comprises a
2-thio-thymidine nucleobase. In certain embodiments, one of A or B
is an .alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a 2-thio-thymidine nucleobase.
[0518] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a
2-thio-thymidine nucleobase. In certain embodiments, one of A or B
is a cEt nucleoside, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-(ara)-F sugar moiety, and W comprises
2-thio-thymidine nucleobase.
[0519] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 5-propyne uridine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and C comprises a 5-propyne
uridine nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a 5-propyne uridine nucleobase. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and C comprises a 5-propyne
uridine nucleobase.
[0520] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 5-propyne uridine nucleobase. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-F sugar moiety, and C comprises a 5-propyne uridine nucleobase.
In certain embodiments, one of A or B is a cEt nucleoside, another
of A or B comprises a 2'-F sugar moiety, and W comprises a
5-propyne uridine nucleobase. In certain embodiments, one of A or B
is an .alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a 5-propyne uridine nucleobase.
[0521] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 5-propyne uridine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5-propyne
uridine nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a 5-propyne uridine nucleobase. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-(ara)-F sugar moiety, and W comprises a
5-propyne uridine nucleobase.
[0522] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a sugar surrogate. In certain embodiments, one of A
or B is an LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a sugar surrogate. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a sugar surrogate.
In certain embodiments, one of A or B is an .alpha.-L-LNA
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a sugar surrogate.
[0523] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a sugar surrogate. In certain embodiments, one of A or
B is an LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a sugar surrogate. In certain embodiments,
one of A or B is a cEt nucleoside, another of A or B comprises a
2'-F sugar moiety, and W comprises a sugar surrogate. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-F sugar moiety, and W comprises a sugar
surrogate.
[0524] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a sugar surrogate. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-(ara)-F sugar moiety, and W comprises a sugar surrogate. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-(ara)-F sugar moiety, and W comprises a sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-(ara)-F
sugar moiety, and W comprises sugar surrogate.
[0525] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a HNA sugar surrogate. In certain embodiments, one
of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a HNA sugar surrogate. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a HNA sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a HNA sugar surrogate.
[0526] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a HNA sugar surrogate. In certain embodiments, one of A
or B is an LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a HNA sugar surrogate. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a HNA sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a sugar HNA surrogate.
[0527] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a HNA sugar surrogate. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a HNA sugar
surrogate. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a HNA sugar surrogate. In certain embodiments, one
of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a HNA sugar
surrogate.
[0528] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a F-HNA sugar surrogate. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a F-HNA sugar surrogate. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a F-HNA
sugar surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a F-HNA sugar surrogate.
[0529] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a F-HNA sugar surrogate. In certain embodiments, one of
A or B is an LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a F-HNA sugar surrogate. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a F-HNA sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a F-HNA sugar surrogate.
[0530] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a F-HNA sugar surrogate. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a F-HNA sugar
surrogate. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a F-HNA sugar surrogate. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a F-HNA sugar
surrogate.
[0531] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 5'-Me DNA sugar moiety. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a 5'-Me DNA sugar moiety. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a 5'-Me DNA
sugar moiety. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a 5'-Me DNA sugar moiety.
[0532] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 5'-Me DNA sugar moiety. In certain embodiments, one
of A or B is an LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a 5'-Me DNA sugar moiety. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a 5'-Me DNA sugar
moiety. In certain embodiments, one of A or B is an .alpha.-L-LNA
nucleoside, another of A or B comprises a 2'-F sugar moiety, and W
comprises a 5'-Me DNA sugar moiety.
[0533] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 5'-Me DNA sugar moiety. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5'-Me DNA
sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a 5'-Me DNA sugar moiety. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5'-Me DNA
sugar moiety.
[0534] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 5'-(R)-Me DNA sugar moiety. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 5'-(R)-Me DNA
sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a 5'-(R)-Me DNA sugar moiety. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 5'-(R)-Me DNA
sugar moiety.
[0535] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 5'-(R)-Me DNA sugar moiety. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-F sugar moiety, and W comprises a 5'-(R)-Me DNA sugar moiety. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-F sugar moiety, and W comprises a 5'-(R)-Me
DNA sugar moiety. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a 5'-(R)-Me DNA sugar moiety.
[0536] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 5'-(R)-Me DNA sugar moiety. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5'-(R)-Me
DNA sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a 5'-(R)-Me DNA sugar moiety. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-(ara)-F sugar moiety, and W comprises a
5'-(R)-Me DNA sugar moiety.
[0537] In certain embodiments, at least two of A, B or W comprises
a 2'-substituted sugar moiety, and the other comprises a bicyclic
sugar moiety. In certain embodiments, at least two of A, B or W
comprises a bicyclic sugar moiety, and the other comprises a
2'-substituted sugar moiety. In certain embodiments, a gapmer has a
sugar motif other than: E-K-K-(D).sub.9-K-K-E;
E-E-E-E-K-(D).sub.9-E-E-E-E-E; E-K-K-K-(D).sub.9-K-K-K-E;
K-E-E-K-(D).sub.9-K-E-E-K; K-D-D-K-(D).sub.9-K-D-D-K;
K-E-K-E-K-(D).sub.9-K-E-K-E-K; K-D-K-D-K-(D).sub.9-K-D-K-D-K;
E-K-E-K-(D).sub.9-K-E-K-E; E-E-E-E-E-K-(D).sub.8-E-E-E-E-E; or
E-K-E-K-E-(D).sub.9-E-K-E-K-E, E-E-E-K-K-(D).sub.7-E-E-K,
E-K-E-K-K-K-(D).sub.7-K-E-K-E, E-K-E-K-E-K-(D).sub.7-K-E-K-E,
wherein K is a nucleoside comprising a cEt sugar moiety and E is a
nucleoside comprising a 2'-MOE sugar moiety.
[0538] In certain embodiments a gapmer comprises a
A-(D).sub.4-A-(D).sub.4-A-(D).sub.4-AA motif. In certain
embodiments a gapmer comprises a
B-(D).sub.4-A-(D).sub.4-A-(D).sub.4-AA motif. In certain
embodiments a gapmer comprises a
A-(D).sub.4-B-(D).sub.4-A-(D).sub.4-AA motif. In certain
embodiments a gapmer comprises a
A-(D).sub.4-A-(D).sub.4-B-(D).sub.4-AA motif. In certain
embodiments a gapmer comprises a
A-(D).sub.4-A-(D).sub.4-A-(D).sub.4-BA motif. In certain
embodiments a gapmer comprises a
A-(D).sub.4-A-(D).sub.4-A-(D).sub.4-BB motif. In certain
embodiments a gapmer comprises a
K-(D).sub.4-K-(D).sub.4-K-(D).sub.4-K-E motif.
[0539] viii. Certain Internucleoside Linkage Motifs
[0540] In certain embodiments, oligonucleotides comprise modified
internucleoside linkages arranged along the oligonucleotide or
region thereof in a defined pattern or modified internucleoside
linkage motif. In certain embodiments, internucleoside linkages are
arranged in a gapped motif, as described above for nucleoside
motif. In such embodiments, the internucleoside linkages in each of
two wing regions are different from the internucleoside linkages in
the gap region. In certain embodiments the internucleoside linkages
in the wings are phosphodiester and the internucleoside linkages in
the gap are phosphorothioate. The nucleoside motif is independently
selected, so such oligonucleotides having a gapped internucleoside
linkage motif may or may not have a gapped nucleoside motif and if
it does have a gapped nucleoside motif, the wing and gap lengths
may or may not be the same.
[0541] In certain embodiments, oligonucleotides comprise a region
having an alternating internucleoside linkage motif. In certain
embodiments, oligonucleotides of the present invention comprise a
region of uniformly modified internucleoside linkages. In certain
such embodiments, the oligonucleotide comprises a region that is
uniformly linked by phosphorothioate internucleoside linkages. In
certain embodiments, the oligonucleotide is uniformly linked by
phosphorothioate. In certain embodiments, each internucleoside
linkage of the oligonucleotide is selected from phosphodiester and
phosphorothioate. In certain embodiments, each internucleoside
linkage of the oligonucleotide is selected from phosphodiester and
phosphorothioate and at least one internucleoside linkage is
phosphorothioate.
[0542] In certain embodiments, the oligonucleotide comprises at
least 6 phosphorothioate internucleoside linkages. In certain
embodiments, the oligonucleotide comprises at least 8
phosphorothioate internucleoside linkages. In certain embodiments,
the oligonucleotide comprises at least 10 phosphorothioate
internucleoside linkages. In certain embodiments, the
oligonucleotide comprises at least one block of at least 6
consecutive phosphorothioate internucleoside linkages. In certain
embodiments, the oligonucleotide comprises at least one block of at
least 8 consecutive phosphorothioate internucleoside linkages. In
certain embodiments, the oligonucleotide comprises at least one
block of at least 10 consecutive phosphorothioate internucleoside
linkages. In certain embodiments, the oligonucleotide comprises at
least block of at least one 12 consecutive phosphorothioate
internucleoside linkages. In certain such embodiments, at least one
such block is located at the 3' end of the oligonucleotide. In
certain such embodiments, at least one such block is located within
3 nucleosides of the 3' end of the oligonucleotide.
[0543] In certain embodiments, oligonucleotides comprise one or
more methylphosphonate linkages. In certain embodiments,
oligonucleotides having a gapmer nucleoside motif comprise a
linkage motif comprising all phosphorothioate linkages except for
one or two methylphosphonate linkages. In certain embodiments, one
methylphosphonate linkage is in the central gap of an
oligonucleotide having a gapmer nucleoside motif.
[0544] ix. Certain Modification Motifs
[0545] Modification motifs define oligonucleotides by nucleoside
motif (sugar motif and nucleobase motif) and linkage motif. For
example, certain oligonucleotides have the following modification
motif:
[0546]
A.sub.sA.sub.sA.sub.sD.sub.sD.sub.sD.sub.sD.sub.s(.sup.ND).sub.sD.s-
ub.sD.sub.sD.sub.sD.sub.sB.sub.sB.sub.sB;
wherein each A is a modified nucleoside comprising a 2'-substituted
sugar moiety; each D is an unmodified 2'-deoxynucleoside; each B is
a modified nucleoside comprising a bicyclic sugar moiety; .sup.ND
is a modified nucleoside comprising a modified nucleobase; and s is
a phosphorothioate internucleoside linkage. Thus, the sugar motif
is a gapmer motif. The nucleobase modification motif is a single
modified nucleobase at 8.sup.th nucleoside from the 5'-end.
Combining the sugar motif and the nucleobase modification motif,
the nucleoside motif is an interrupted gapmer where the gap of the
sugar modified gapmer is interrupted by a nucleoside comprising a
modified nucleobase. The linkage motif is uniform phosphorothioate.
The following non-limiting Table further illustrates certain
modification motifs:
TABLE-US-00013 TABLE 13 Certain Modification Motifs 5'-wing Central
gap 3'-wing region region region B.sub.sB.sub.s
.sub.sD.sub.sD.sub.sD.sub.sD.sub.sD.sub.sD.sub.sD.sub.sD.sub.sD.sub.s
A.sub.sA.sub.sA.sub.sA.sub.sA.sub.sA.sub.sA.sub.sA AsBsBs
DsDsDsDsDsDsDsDsDs BsBsA AsBsBs DsDsDsDs(.sup.ND)sDsDsDsDs BsBsA
AsBsBs DsDsDsDsAsDsDsDsDs BsBsA AsBsBs DsDsDsDsBsDsDsDsDs BsBsA
AsBsBs DsDsDsDsWsDsDsDsDs BsBsA AsBsBsBs DsDsDsDsDsDsDsDsDs
BsBsAsBsB AsBsBs DsDsDsDsDsDsDsDsDs BsBsAsBsB BsBsAsBsBs
DsDsDsDsDsDsDsDsDs BsBsA AsBsBs DsDsDsDsDsDsDsDsDs BsBsAsBsBsBsB
AsAsBsAsAs DsDsDsDsDsDsDsDsDs BsBsA AsAsAsBsAsAs DsDsDsDsDsDsDsDsDs
BsBsA AsAsBsAsAs DsDsDsDsDsDsDsDsDs AsAsBsAsA AsAsAsBsAsAs
DsDsDsDsDsDsDsDsDs AsAsBsAsAsA AsAsAsAsBsAsAs DsDsDsDsDsDsDsDsDs
BsBsA AsBsAsBs DsDsDsDsDsDsDsDsDs BsAsBsA AsBsAsBs
DsDsDsDsDsDsDsDsDs AsAsBsAsAs AsBsBs DsDsDsDsDsDsDsDsDs BsAsBsA
BsBsAsBsBsBsB DsDsDsDsDsDsDsDsDs BsAsBsA AsAsAsAsAs
DsDsDsDsDsDsDsDsDs AsAsAsAsA AsAsAsAsAs DsDsDsDsDsDsDs AsAsAsAsA
AsAsAsAsAs DsDsDsDsDsDsDsDsDs BsBsAsBsBsBsB AsAsAsBsBs
DsDsDsDsDsDsDs BsBsA AsBsAsBs DsDsDsDsDsDsDsDs BsBsA AsBsAsBs
DsDsDsDsDsDsDs AsAsAsBsBs AsAsAsAsBs DsDsDsDsDsDsDs BsAsAsAsA BsBs
DsDsDsDsDsDsDsDs AsA AsAs DsDsDsDsDsDsDs AsAsAsAsAsAsAsA AsAsAs
DsDsDsDsDsDsDs AsAsAsAsAsAsA AsAsAs DsDsDsDsDsDsDs AsAsAsAsAsA AsBs
DsDsDsDsDsDsDs BsBsBsA AsBsBsBs DsDsDsDsDsDsDsDsDs BsA AsBs
DsDsDsDsDsDsDsDsDs BsBsBsA AsAsAsBsBs DsDsDs(.sup.ND)sDsDsDs
BsBsAsAsA AsAsAsBsBs DsDsDsAsDsDsDs BsBsAsAsA AsAsAsBsBs
DsDsDsBsDsDsDs BsBsAsAsA AsAsAsAsBs DsDsDsDsDsDsDs BsAsAsAsA
AsAsBsBsBs DsDsDsDsDsDsDs BsBsBsAsA AsAsAsAsBs DsDsDsDsDsDsDs
AsAsAsAsAs AsAsAsBsBs DsDsDsDsDsDsDs AsAsAsAsAs AsAsBsBsBs
DsDsDsDsDsDsDs AsAsAsAsAs AsAsAsAsAs DsDsDsDsDsDsDs BsAsAsAsAs
AsAsAsAsAs DsDsDsDsDsDsDs BsBsAsAsAs AsAsAsAsAs DsDsDsDsDsDsDs
BsBsBsAsAs AsBsBs DsDsDsDs(.sup.ND)s(.sup.ND)sDsDsDs BsBsA AsBsBs
Ds(.sup.ND)s(.sup.ND)sDs(.sup.ND)s(.sup.ND)sDs(.sup.ND)s(.sup.ND)s
BsBsA AsBsBs Ds(.sup.ND)sDsDsDsDsDsDsDs BsBsA AsBsBs
DsDs(.sup.ND)sDsDsDsDsDsDs BsBsA AsBsBs
Ds(.sup.ND)s(.sup.ND)sDsDsDsDsDsDs BsBsA AsBsBs
DsDs(D)zDsDsDsDsDsDs BsBsA AsBsBs Ds(D)zDsDsDsDsDsDsDs BsBsA AsBsBs
(D)zDsDsDsDsDsDsDsDs BsBsA AsBsBs DsDsAsDsDsDsDsDsDs BsBsA AsBsBs
DsDsBsDsDsDsDsDsDs BsBsA AsBsBs AsDsDsDsDsDsDsDsDs BsBsA AsBsBs
BsDsDsDsDsDsDsDsDs BsBsA AsBsAsBs DsDs(D)zDsDsDsDsDsDs BsBsBsAsAs
AsAsAsBsBs DsDs(.sup.ND)sDsDsDsDsDsDs AsA AsBsBsBs
Ds(D)zDsDsDsDsDsDsDs AsAsAsBsBs AsBsBs DsDsDsDsDsDsDsDs(D)z BsBsA
AsAsBsBsBs DsDsDsAsDsDsDs BsBsBsAsA AsAsBsBsBs DsDsDsBsDsDsDs
BsBsBsAsA AsBsAsBs DsDsDsAsDsDsDs BsBsAsBsBsBsB AsBsBsBs
DsDsDsDs(D)zDsDsDsDs BsA AsAsBsBsBs DsDsAsAsDsDsDs BsBsA AsBsBs
DsDsDsDs(D)zDsDsDsDs BsBsBsA BsBs
DsDs(.sup.ND)sDs(.sup.ND)sDsDsDsDs BsBsAsBsBsBsB
[0547] wherein each A and B are nucleosides comprising differently
modified sugar moieties, each D is a nucleoside comprising an
unmodified 2' deoxy sugar moiety, each W is a modified nucleoside
of either the first type, the second type or a third type, each
.sup.ND is a modified nucleoside comprising a modified nucleobase,
s is a phosphorothioate internucleoside linkage, and z is a
non-phosphorothioate internucleoside linkage.
[0548] In certain embodiments, each A comprises a modified sugar
moiety. In certain embodiments, each A comprises a 2'-substituted
sugar moiety. In certain embodiments, each A comprises a
2'-substituted sugar moiety selected from among F, (ara)-F,
OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments,
each A comprises a bicyclic sugar moiety. In certain embodiments,
each A comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each A comprises a modified nucleobase. In certain
embodiments, each A comprises a modified nucleobase selected from
among 2-thio-thymidine nucleoside and 5-propyne uridine nucleoside.
In certain embodiments, each B comprises a modified sugar moiety.
In certain embodiments, each B comprises a 2'-substituted sugar
moiety. In certain embodiments, each B comprises a 2'-substituted
sugar moiety selected from among F, (ara)-F, OCH.sub.3 and
O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments, each B
comprises a bicyclic sugar moiety. In certain embodiments, each B
comprises a bicyclic sugar moiety selected from among cEt, cMOE,
LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain embodiments,
each B comprises a modified nucleobase. In certain embodiments,
each B comprises a modified nucleobase selected from among
2-thio-thymidine nucleoside and 5-propyne urindine nucleoside. In
certain embodiments, each A comprises an HNA. In certain
embodiments, each A comprises an F-HNA.
[0549] In certain embodiments, each W comprises a modified sugar
moiety. In certain embodiments, each W comprises a 2'-substituted
sugar moiety. In certain embodiments, each W comprises a
2'-substituted sugar moiety selected from among F, (ara)-F,
OCH.sub.3 and O(CH.sub.2).sub.2--OCH.sub.3. In certain embodiments,
each W comprises a 5'-substituted sugar moiety. In certain
embodiments, each W comprises a 5'-substituted sugar moiety
selected from among 5'-Me, and 5'-(R)-Me. In certain embodiments,
each W comprises a bicyclic sugar moiety. In certain embodiments,
each W comprises a bicyclic sugar moiety selected from among cEt,
cMOE, LNA, .alpha.-L-LNA, ENA and 2'-thio LNA. In certain
embodiments, each W comprises a sugar surrogate. In certain
embodiments, each W comprises a sugar surrogate selected from among
HNA and F--HNA.
[0550] In certain embodiments, at least one of A or B comprises a
bicyclic sugar moiety, and the other comprises a 2'-substituted
sugar moiety. In certain embodiments, one of A or B is an LNA
nucleoside and the other of A or B comprises a 2'-substituted sugar
moiety. In certain embodiments, one of A or B is a cEt nucleoside
and the other of A or B comprises a 2'-substituted sugar moiety. In
certain embodiments, one of A or B is an .alpha.-L-LNA nucleoside
and the other of A or B comprises a 2'-substituted sugar moiety. In
certain embodiments, one of A or B is an LNA nucleoside and the
other of A or B comprises a 2'-MOE sugar moiety. In certain
embodiments, one of A or B is a cEt nucleoside and the other of A
or B comprises a 2'-MOE sugar moiety. In certain embodiments, one
of A or B is an .alpha.-L-LNA nucleoside and the other of A or B
comprises a 2'-MOE sugar moiety. In certain embodiments, one of A
or B is an LNA nucleoside and the other of A or B comprises a 2'-F
sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside and the other of A or B comprises a 2'-F sugar moiety.
In certain embodiments, one of A or B is an .alpha.-L-LNA
nucleoside and the other of A or B comprises a 2'-F sugar moiety.
In certain embodiments, one of A or B is an LNA nucleoside and the
other of A or B comprises a 2'-(ara)-F sugar moiety. In certain
embodiments, one of A or B is a cEt nucleoside and the other of A
or B comprises a 2'-(ara)-F sugar moiety. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside and the other of A or
B comprises a 2'-(ara)-F sugar moiety.
[0551] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-substituted sugar moiety. In certain
embodiments, A is an LNA nucleoside and B comprises a
2'-substituted sugar moiety. In certain embodiments, A is a cEt
nucleoside and B comprises a 2'-substituted sugar moiety. In
certain embodiments, A is an .alpha.-L-LNA nucleoside and B
comprises a 2'-substituted sugar moiety.
[0552] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-MOE sugar moiety. In certain embodiments, A is
an LNA nucleoside and B comprises a 2'-MOE sugar moiety. In certain
embodiments, A is a cEt nucleoside and B comprises a 2'-MOE sugar
moiety. In certain embodiments, A is an .alpha.-L-LNA nucleoside
and B comprises a 2'-MOE sugar moiety.
[0553] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-F sugar moiety. In certain embodiments, A is
an LNA nucleoside and B comprises a 2'-F sugar moiety. In certain
embodiments, A is a cEt nucleoside and B comprises a 2'-F sugar
moiety. In certain embodiments, A is an .alpha.-L-LNA nucleoside
and B comprises a 2'-F sugar moiety.
[0554] In certain embodiments, A comprises a bicyclic sugar moiety,
and B comprises a 2'-(ara)-F sugar moiety. In certain embodiments,
A is an LNA nucleoside and B comprises a 2'-(ara)-F sugar moiety.
In certain embodiments, A is a cEt nucleoside and B comprises a
2'-(ara)-F sugar moiety. In certain embodiments, A is an
.alpha.-L-LNA nucleoside and B comprises a 2'-(ara)-F sugar
moiety.
[0555] In certain embodiments, B comprises a bicyclic sugar moiety,
and A comprises a 2'-MOE sugar moiety. In certain embodiments, B is
an LNA nucleoside and A comprises a 2'-MOE sugar moiety. In certain
embodiments, B is a cEt nucleoside and A comprises a 2'-MOE sugar
moiety. In certain embodiments, B is an .alpha.-L-LNA nucleoside
and A comprises a 2'-MOE sugar moiety.
[0556] In certain embodiments, B comprises a bicyclic sugar moiety,
and A comprises a 2'-F sugar moiety. In certain embodiments, B is
an LNA nucleoside and A comprises a 2'-F sugar moiety. In certain
embodiments, B is a cEt nucleoside and A comprises a 2'-F sugar
moiety. In certain embodiments, B is an .alpha.-L-LNA nucleoside
and A comprises a 2'-F sugar moiety.
[0557] In certain embodiments, B comprises a bicyclic sugar moiety,
and A comprises a 2'-(ara)-F sugar moiety. In certain embodiments,
B is an LNA nucleoside and A comprises a 2'-(ara)-F sugar moiety.
In certain embodiments, B is a cEt nucleoside and A comprises a
2'-(ara)-F sugar moiety. In certain embodiments, B is an
.alpha.-L-LNA nucleoside and A comprises a 2'-(ara)-F sugar
moiety.
[0558] In certain embodiments, at least one of A or B comprises a
bicyclic sugar moiety, another of A or B comprises a 2'-substituted
sugar moiety and W comprises a modified nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-substituted sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-substituted sugar
moiety, and C comprises a modified nucleobase. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-substituted sugar moiety, and W comprises
a modified nucleobase.
[0559] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a modified nucleobase. In certain embodiments, one
of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a modified nucleobase. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a modified nucleobase.
[0560] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a modified nucleobase. In certain embodiments, one of A
or B is an LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a modified nucleobase. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a modified nucleobase.
[0561] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a modified nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a modified
nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a modified nucleobase. In certain embodiments, one
of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a modified
nucleobase.
[0562] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-substituted sugar
moiety, and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-substituted sugar moiety, and W comprises a
2-thio-thymidine nucleobase. In certain embodiments, one of A or B
is a cEt nucleoside, another of A or B comprises a 2'-substituted
sugar moiety, and W comprises a 2-thio-thymidine nucleobase. In
certain embodiments, one of A or B is an .alpha.-L-LNA nucleoside,
another of A or B comprises a 2'-substituted sugar moiety, and W
comprises a 2-thio-thymidine nucleobase.
[0563] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 2-thio-thymidine
nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a 2-thio-thymidine nucleobase. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 2-thio-thymidine
nucleobase.
[0564] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 2-thio-thymidine nucleobase. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-F sugar moiety, and W comprises a 2-thio-thymidine nucleobase.
In certain embodiments, one of A or B is a cEt nucleoside, another
of A or B comprises a 2'-F sugar moiety, and W comprises a
2-thio-thymidine nucleobase. In certain embodiments, one of A or B
is an .alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a 2-thio-thymidine nucleobase.
[0565] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a
2-thio-thymidine nucleobase. In certain embodiments, one of A or B
is a cEt nucleoside, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 2-thio-thymidine nucleobase. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-(ara)-F sugar moiety, and W comprises
2-thio-thymidine nucleobase.
[0566] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 5-propyne uridine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and C comprises a 5-propyne
uridine nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a 5-propyne uridine nucleobase. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and C comprises a 5-propyne
uridine nucleobase.
[0567] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 5-propyne uridine nucleobase. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-F sugar moiety, and C comprises a 5-propyne uridine nucleobase.
In certain embodiments, one of A or B is a cEt nucleoside, another
of A or B comprises a 2'-F sugar moiety, and W comprises a
5-propyne uridine nucleobase. In certain embodiments, one of A or B
is an .alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a 5-propyne uridine nucleobase.
[0568] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 5-propyne uridine nucleobase. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5-propyne
uridine nucleobase. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a 5-propyne uridine nucleobase. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-(ara)-F sugar moiety, and W comprises a
5-propyne uridine nucleobase.
[0569] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a sugar surrogate. In certain embodiments, one of A
or B is an LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a sugar surrogate. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a sugar surrogate.
In certain embodiments, one of A or B is an .alpha.-L-LNA
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a sugar surrogate.
[0570] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a sugar surrogate. In certain embodiments, one of A or
B is an LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a sugar surrogate. In certain embodiments,
one of A or B is a cEt nucleoside, another of A or B comprises a
2'-F sugar moiety, and W comprises a sugar surrogate. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-F sugar moiety, and W comprises a sugar
surrogate.
[0571] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a sugar surrogate. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-(ara)-F sugar moiety, and W comprises a sugar surrogate. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-(ara)-F sugar moiety, and W comprises a sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-(ara)-F
sugar moiety, and W comprises sugar surrogate.
[0572] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a HNA sugar surrogate. In certain embodiments, one
of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a HNA sugar surrogate. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a HNA sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a HNA sugar surrogate.
[0573] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a HNA sugar surrogate. In certain embodiments, one of A
or B is an LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a HNA sugar surrogate. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a HNA sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a sugar HNA surrogate.
[0574] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a HNA sugar surrogate. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a HNA sugar
surrogate. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a HNA sugar surrogate. In certain embodiments, one
of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a HNA sugar
surrogate.
[0575] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a F-HNA sugar surrogate. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a F--HNA sugar surrogate. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a F-HNA
sugar surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a F-HNA sugar surrogate.
[0576] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a F-HNA sugar surrogate. In certain embodiments, one of
A or B is an LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a F-HNA sugar surrogate. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a F-HNA sugar
surrogate. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a F-HNA sugar surrogate.
[0577] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a F-HNA sugar surrogate. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a F-HNA sugar
surrogate. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a F-HNA sugar surrogate. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a F-HNA sugar
surrogate.
[0578] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 5'-Me DNA sugar moiety. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-MOE sugar moiety, and W comprises a 5'-Me DNA sugar moiety. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-MOE sugar moiety, and W comprises a 5'-Me DNA
sugar moiety. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-MOE
sugar moiety, and W comprises a 5'-Me DNA sugar moiety.
[0579] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 5'-Me DNA sugar moiety. In certain embodiments, one
of A or B is an LNA nucleoside, another of A or B comprises a 2'-F
sugar moiety, and W comprises a 5'-Me DNA sugar moiety. In certain
embodiments, one of A or B is a cEt nucleoside, another of A or B
comprises a 2'-F sugar moiety, and W comprises a 5'-Me DNA sugar
moiety. In certain embodiments, one of A or B is an .alpha.-L-LNA
nucleoside, another of A or B comprises a 2'-F sugar moiety, and W
comprises a 5'-Me DNA sugar moiety.
[0580] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 5'-Me DNA sugar moiety. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5'-Me DNA
sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a 5'-Me DNA sugar moiety. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5'-Me DNA
sugar moiety.
[0581] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-MOE sugar moiety,
and W comprises a 5'-(R)-Me DNA sugar moiety. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 5'-(R)-Me DNA
sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-MOE sugar moiety, and
W comprises a 5'-(R)-Me DNA sugar moiety. In certain embodiments,
one of A or B is an .alpha.-L-LNA nucleoside, another of A or B
comprises a 2'-MOE sugar moiety, and W comprises a 5'-(R)-Me DNA
sugar moiety.
[0582] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-F sugar moiety, and
W comprises a 5'-(R)-Me DNA sugar moiety. In certain embodiments,
one of A or B is an LNA nucleoside, another of A or B comprises a
2'-F sugar moiety, and W comprises a 5'-(R)-Me DNA sugar moiety. In
certain embodiments, one of A or B is a cEt nucleoside, another of
A or B comprises a 2'-F sugar moiety, and W comprises a 5'-(R)-Me
DNA sugar moiety. In certain embodiments, one of A or B is an
.alpha.-L-LNA nucleoside, another of A or B comprises a 2'-F sugar
moiety, and W comprises a 5'-(R)-Me DNA sugar moiety.
[0583] In certain embodiments, one of A or B comprises a bicyclic
sugar moiety, another of A or B comprises a 2'-(ara)-F sugar
moiety, and W comprises a 5'-(R)-Me DNA sugar moiety. In certain
embodiments, one of A or B is an LNA nucleoside, another of A or B
comprises a 2'-(ara)-F sugar moiety, and W comprises a 5'-(R)-Me
DNA sugar moiety. In certain embodiments, one of A or B is a cEt
nucleoside, another of A or B comprises a 2'-(ara)-F sugar moiety,
and W comprises a 5'-(R)-Me DNA sugar moiety. In certain
embodiments, one of A or B is an .alpha.-L-LNA nucleoside, another
of A or B comprises a 2'-(ara)-F sugar moiety, and W comprises a
5'-(R)-Me DNA sugar moiety.
[0584] In certain embodiments, at least two of A, B or W comprises
a 2'-substituted sugar moiety, and the other comprises a bicyclic
sugar moiety. In certain embodiments, at least two of A, B or W
comprises a bicyclic sugar moiety, and the other comprises a
2'-substituted sugar moiety.
[0585] d. Certain Overall Lengths
[0586] In certain embodiments, the present invention provides
oligomeric compounds including oligonucleotides of any of a variety
of ranges of lengths. In certain embodiments, the invention
provides oligomeric compounds or oligonucleotides consisting of X
to Y linked nucleosides, where X represents the fewest number of
nucleosides in the range and Y represents the largest number of
nucleosides in the range. In certain such embodiments, X and Y are
each independently selected from 8, 9, 10, 11, 12, 13, 14, 15, 16,
17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33,
34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, and
50; provided that X.ltoreq.Y. For example, in certain embodiments,
the invention provides oligomeric compounds which comprise
oligonucleotides consisting of 8 to 9, 8 to 10, 8 to 11, 8 to 12, 8
to 13, 8 to 14, 8 to 15, 8 to 16, 8 to 17, 8 to 18, 8 to 19, 8 to
20, 8 to 21, 8 to 22, 8 to 23, 8 to 24, 8 to 25, 8 to 26, 8 to 27,
8 to 28, 8 to 29, 8 to 30, 9 to 10, 9 to 11, 9 to 12, 9 to 13, 9 to
14, 9 to 15, 9 to 16, 9 to 17, 9 to 18, 9 to 19, 9 to 20, 9 to 21,
9 to 22, 9 to 23, 9 to 24, 9 to 25, 9 to 26, 9 to 27, 9 to 28, 9 to
29, 9 to 30, 10 to 11, 10 to 12, 10 to 13, 10 to 14, 10 to 15, 10
to 16, 10 to 17, 10 to 18, 10 to 19, 10 to 20, 10 to 21, 10 to 22,
10 to 23, 10 to 24, 10 to 25, 10 to 26, 10 to 27, 10 to 28, 10 to
29, 10 to 30, 11 to 12, 11 to 13, 11 to 14, 11 to 15, 11 to 16, 11
to 17, 11 to 18, 11 to 19, 11 to 20, 11 to 21, 11 to 22, 11 to 23,
11 to 24, 11 to 25, 11 to 26, 11 to 27, 11 to 28, 11 to 29, 11 to
30, 12 to 13, 12 to 14, 12 to 15, 12 to 16, 12 to 17, 12 to 18, 12
to 19, 12 to 20, 12 to 21, 12 to 22, 12 to 23, 12 to 24, 12 to 25,
12 to 26, 12 to 27, 12 to 28, 12 to 29, 12 to 30, 13 to 14, 13 to
15, 13 to 16, 13 to 17, 13 to 18, 13 to 19, 13 to 20, 13 to 21, 13
to 22, 13 to 23, 13 to 24, 13 to 25, 13 to 26, 13 to 27, 13 to 28,
13 to 29, 13 to 30, 14 to 15, 14 to 16, 14 to 17, 14 to 18, 14 to
19, 14 to 20, 14 to 21, 14 to 22, 14 to 23, 14 to 24, 14 to 25, 14
to 26, 14 to 27, 14 to 28, 14 to 29, 14 to 30, 15 to 16, 15 to 17,
15 to 18, 15 to 19, 15 to 20, 15 to 21, 15 to 22, 15 to 23, 15 to
24, 15 to 25, 15 to 26, 15 to 27, 15 to 28, 15 to 29, 15 to 30, 16
to 17, 16 to 18, 16 to 19, 16 to 20, 16 to 21, 16 to 22, 16 to 23,
16 to 24, 16 to 25, 16 to 26, 16 to 27, 16 to 28, 16 to 29, 16 to
30, 17 to 18, 17 to 19, 17 to 20, 17 to 21, 17 to 22, 17 to 23, 17
to 24, 17 to 25, 17 to 26, 17 to 27, 17 to 28, 17 to 29, 17 to 30,
18 to 19, 18 to 20, 18 to 21, 18 to 22, 18 to 23, 18 to 24, 18 to
25, 18 to 26, 18 to 27, 18 to 28, 18 to 29, 18 to 30, 19 to 20, 19
to 21, 19 to 22, 19 to 23, 19 to 24, 19 to 25, 19 to 26, 19 to 29,
19 to 28, 19 to 29, 19 to 30, 20 to 21, 20 to 22, 20 to 23, 20 to
24, 20 to 25, 20 to 26, 20 to 27, 20 to 28, 20 to 29, 20 to 30, 21
to 22, 21 to 23, 21 to 24, 21 to 25, 21 to 26, 21 to 27, 21 to 28,
21 to 29, 21 to 30, 22 to 23, 22 to 24, 22 to 25, 22 to 26, 22 to
27, 22 to 28, 22 to 29, 22 to 30, 23 to 24, 23 to 25, 23 to 26, 23
to 27, 23 to 28, 23 to 29, 23 to 30, 24 to 25, 24 to 26, 24 to 27,
24 to 28, 24 to 29, 24 to 30, 25 to 26, 25 to 27, 25 to 28, 25 to
29, 25 to 30, 26 to 27, 26 to 28, 26 to 29, 26 to 30, 27 to 28, 27
to 29, 27 to 30, 28 to 29, 28 to 30, or 29 to 30 linked
nucleosides. In embodiments where the number of nucleosides of an
oligomeric compound or oligonucleotide is limited, whether to a
range or to a specific number, the oligomeric compound or
oligonucleotide may, nonetheless further comprise additional other
substituents. For example, an oligonucleotide comprising 8-30
nucleosides excludes oligonucleotides having 31 nucleosides, but,
unless otherwise indicated, such an oligonucleotide may further
comprise, for example one or more conjugates, terminal groups, or
other substituents. In certain embodiments, a gapmer
oligonucleotide has any of the above lengths.
[0587] Further, where an oligonucleotide is described by an overall
length range and by regions having specified lengths, and where the
sum of specified lengths of the regions is less than the upper
limit of the overall length range, the oligonucleotide may have
additional nucleosides, beyond those of the specified regions,
provided that the total number of nucleosides does not exceed the
upper limit of the overall length range.
[0588] e. Certain Oligonucleotides
[0589] In certain embodiments, oligonucleotides of the present
invention are characterized by their modification motif and overall
length. In certain embodiments, such parameters are each
independent of one another. Thus, unless otherwise indicated, each
internucleoside linkage of an oligonucleotide having a gapmer sugar
motif may be modified or unmodified and may or may not follow the
gapmer modification pattern of the sugar modifications. For
example, the internucleoside linkages within the wing regions of a
sugar-gapmer may be the same or different from one another and may
be the same or different from the internucleoside linkages of the
gap region. Likewise, such sugar-gapmer oligonucleotides may
comprise one or more modified nucleobase independent of the gapmer
pattern of the sugar modifications. One of skill in the art will
appreciate that such motifs may be combined to create a variety of
oligonucleotides. Herein if a description of an oligonucleotide or
oligomeric compound is silent with respect to one or more
parameter, such parameter is not limited. Thus, an oligomeric
compound described only as having a gapmer sugar motif without
further description may have any length, internucleoside linkage
motif, and nucleobase modification motif. Unless otherwise
indicated, all chemical modifications are independent of nucleobase
sequence.
[0590] f. Certain Conjugate Groups
[0591] In certain embodiments, oligomeric compounds are modified by
attachment of one or more conjugate groups. In general, conjugate
groups modify one or more properties of the attached oligomeric
compound including but not limited to pharmacodynamics,
pharmacokinetics, stability, binding, absorption, cellular
distribution, cellular uptake, charge and clearance. Conjugate
groups are routinely used in the chemical arts and are linked
directly or via an optional conjugate linking moiety or conjugate
linking group to a parent compound such as an oligomeric compound,
such as an oligonucleotide. Conjugate groups includes without
limitation, intercalators, reporter molecules, polyamines,
polyamides, polyethylene glycols, thioethers, polyethers,
cholesterols, thiocholesterols, cholic acid moieties, folate,
lipids, phospholipids, biotin, phenazine, phenanthridine,
anthraquinone, adamantane, acridine, fluoresceins, rhodamines,
coumarins and dyes. Certain conjugate groups have been described
previously, for example: cholesterol moiety (Letsinger et al.,
Proc. Natl. Acad. Sci. USA, 1989, 86, 6553-6556), cholic acid
(Manoharan et al., Bioorg. Med. Chem. Let., 1994, 4, 1053-1060), a
thioether, e.g., hexyl-5-tritylthiol (Manoharan et al., Ann N.Y.
Acad. Sci., 1992, 660, 306-309; Manoharan et al., Bioorg. Med.
Chem. Let., 1993, 3, 2765-2770), a thiocholesterol (Oberhauser et
al., Nucl. Acids Res., 1992, 20, 533-538), an aliphatic chain,
e.g., do-decan-diol or undecyl residues (Saison-Behmoaras et al.,
EMBO J., 1991, 10, 1111-1118; Kabanov et al., FEBS Lett., 1990,
259, 327-330; Svinarchuk et al., Biochimie, 1993, 75, 49-54), a
phospholipid, e.g., di-hexadecyl-rac-glycerol or triethyl-ammonium
1,2-di-O-hexadecyl-rac-glycero-3-H-phosphonate (Manoharan et al.,
Tetrahedron Lett., 1995, 36, 3651-3654; Shea et al., Nucl. Acids
Res., 1990, 18, 3777-3783), a polyamine or a polyethylene glycol
chain (Manoharan et al., Nucleosides & Nucleotides, 1995, 14,
969-973), or adamantane acetic acid (Manoharan et al., Tetrahedron
Lett., 1995, 36, 3651-3654), a palmityl moiety (Mishra et al.,
Biochim. Biophys. Acta, 1995, 1264, 229-237), or an octadecylamine
or hexylamino-carbonyl-oxycholesterol moiety (Crooke et al., J.
Pharmacol. Exp. Ther., 1996, 277, 923-937).
[0592] In certain embodiments, a conjugate group comprises an
active drug substance, for example, aspirin, warfarin,
phenylbutazone, ibuprofen, suprofen, fen-bufen, ketoprofen,
(S)-(+)-pranoprofen, carprofen, dansylsarcosine,
2,3,5-triiodobenzoic acid, flufenamic acid, folinic acid, a
benzothiadiazide, chlorothiazide, a diazepine, indo-methicin, a
barbiturate, a cephalosporin, a sulfa drug, an antidiabetic, an
antibacterial or an antibiotic.
[0593] In certain embodiments, conjugate groups are directly
attached to oligonucleotides in oligomeric compounds. In certain
embodiments, conjugate groups are attached to oligonucleotides by a
conjugate linking group. In certain such embodiments, conjugate
linking groups, including, but not limited to, bifunctional linking
moieties such as those known in the art are amenable to the
compounds provided herein. Conjugate linking groups are useful for
attachment of conjugate groups, such as chemical stabilizing
groups, functional groups, reporter groups and other groups to
selective sites in a parent compound such as for example an
oligomeric compound. In general a bifunctional linking moiety
comprises a hydrocarbyl moiety having two functional groups. One of
the functional groups is selected to bind to a parent molecule or
compound of interest and the other is selected to bind essentially
any selected group such as chemical functional group or a conjugate
group. In some embodiments, the conjugate linker comprises a chain
structure or an oligomer of repeating units such as ethylene glycol
or amino acid units. Examples of functional groups that are
routinely used in a bifunctional linking moiety include, but are
not limited to, electrophiles for reacting with nucleophilic groups
and nucleophiles for reacting with electrophilic groups. In some
embodiments, bifunctional linking moieties include amino, hydroxyl,
carboxylic acid, thiol, unsaturations (e.g., double or triple
bonds), and the like.
[0594] Some nonlimiting examples of conjugate linking moieties
include pyrrolidine, 8-amino-3,6-dioxaoctanoic acid (ADO),
succinimidyl 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (SMCC)
and 6-aminohexanoic acid (AHEX or AHA). Other linking groups
include, but are not limited to, substituted C.sub.1-C.sub.10
alkyl, substituted or unsubstituted C.sub.2-C.sub.10 alkenyl or
substituted or unsubstituted C.sub.2-C.sub.10 alkynyl, wherein a
nonlimiting list of preferred substituent groups includes hydroxyl,
amino, alkoxy, carboxy, benzyl, phenyl, nitro, thiol, thioalkoxy,
halogen, alkyl, aryl, alkenyl and alkynyl.
[0595] Conjugate groups may be attached to either or both ends of
an oligonucleotide (terminal conjugate groups) and/or at any
internal position.
[0596] In certain embodiments, conjugate groups are at the 3'-end
of an oligonucleotide of an oligomeric compound. In certain
embodiments, conjugate groups are near the 3'-end. In certain
embodiments, conjugates are attached at the 3' end of an oligomeric
compound, but before one or more terminal group nucleosides. In
certain embodiments, conjugate groups are placed within a terminal
group. In certain embodiments, the present invention provides
oligomeric compounds. In certain embodiments, oligomeric compounds
comprise an oligonucleotide. In certain embodiments, an oligomeric
compound comprises an oligonucleotide and one or more conjugate
and/or terminal groups. Such conjugate and/or terminal groups may
be added to oligonucleotides having any of the motifs discussed
above. Thus, for example, an oligomeric compound comprising an
oligonucleotide having region of alternating nucleosides may
comprise a terminal group.
C. ANTISENSE COMPOUNDS
[0597] In certain embodiments, oligomeric compounds provided herein
are antisense compounds. Such antisense compounds are capable of
hybridizing to a target nucleic acid, resulting in at least one
antisense activity. In certain embodiments, antisense compounds
specifically hybridize to one or more target nucleic acid. In
certain embodiments, a specifically hybridizing antisense compound
has a nucleobase sequence comprising a region having sufficient
complementarity to a target nucleic acid to allow hybridization and
result in antisense activity and insufficient complementarity to
any non-target so as to avoid non-specific hybridization to any
non-target nucleic acid sequences under conditions in which
specific hybridization is desired (e.g., under physiological
conditions for in vivo or therapeutic uses, and under conditions in
which assays are performed in the case of in vitro assays).
[0598] In certain embodiments, the present invention provides
antisense compounds comprising oligonucleotides that are fully
complementary to the target nucleic acid over the entire length of
the oligonucleotide. In certain embodiments, oligonucleotides are
99% complementary to the target nucleic acid. In certain
embodiments, oligonucleotides are 95% complementary to the target
nucleic acid. In certain embodiments, such oligonucleotides are 90%
complementary to the target nucleic acid.
[0599] In certain embodiments, such oligonucleotides are 85%
complementary to the target nucleic acid. In certain embodiments,
such oligonucleotides are 80% complementary to the target nucleic
acid. In certain embodiments, an antisense compound comprises a
region that is fully complementary to a target nucleic acid and is
at least 80% complementary to the target nucleic acid over the
entire length of the oligonucleotide. In certain such embodiments,
the region of full complementarity is from 6 to 14 nucleobases in
length.
[0600] a. Certain Antisense Activities and Mechanisms
[0601] In certain antisense activities, hybridization of an
antisense compound results in recruitment of a protein that cleaves
of the target nucleic acid. For example, certain antisense
compounds result in RNase H mediated cleavage of target nucleic
acid. RNase H is a cellular endonuclease that cleaves the RNA
strand of an RNA:DNA duplex. The "DNA" in such an RNA:DNA duplex,
need not be unmodified DNA. In certain embodiments, the invention
provides antisense compounds that are sufficiently "DNA-like" to
elicit RNase H activity. Such DNA-like antisense compounds include,
but are not limited to gapmers having unmodified deoxyfuronose
sugar moieties in the nucleosides of the gap and modified sugar
moieties in the nucleosides of the wings.
[0602] Antisense activities may be observed directly or indirectly.
In certain embodiments, observation or detection of an antisense
activity involves observation or detection of a change in an amount
of a target nucleic acid or protein encoded by such target nucleic
acid; a change in the ratio of splice variants of a nucleic acid or
protein; and/or a phenotypic change in a cell or animal.
[0603] In certain embodiments, compounds comprising
oligonucleotides having a gapmer nucleoside motif described herein
have desirable properties compared to non-gapmer oligonucleotides
or to gapmers having other motifs. In certain circumstances, it is
desirable to identify motifs resulting in a favorable combination
of potent antisense activity and relatively low toxicity. In
certain embodiments, compounds of the present invention have a
favorable therapeutic index (measure of activity divided by measure
of toxicity).
[0604] b. Certain Selective Antisense Compounds
[0605] In certain embodiments, antisense compounds provided are
selective for a target relative to a non-target nucleic acid. In
certain embodiments, the nucleobase sequences of the target and
non-target nucleic acids differ by no more than 4 differentiating
nucleobases in the targeted region. In certain embodiments, the
nucleobase sequences of the target and non-target nucleic acids
differ by no more than 3 differentiating nucleobases in the
targeted region. In certain embodiments, the nucleobase sequences
of the target and non-target nucleic acids differ by no more than 2
differentiating nucleobases in the targeted region. In certain
embodiments, the nucleobase sequences of the target and non-target
nucleic acids differ by a single differentiating nucleobase in the
targeted region. In certain embodiments, the target and non-target
nucleic acids are transcripts from different genes. In certain
embodiments, the target and non-target nucleic acids are different
alleles for the same gene. In certain embodiments, the introduction
of a mismatch between an antisense compound and a non-target
nucleic acid may alter the RNase H cleavage site of a target
nucleic acid compared to a non-target nucleic acid. In certain
embodiments, the target and non-target nucleic acids are not
functionally related to one another (e.g., are transcripts from
different genes). In certain embodiments, the target and not-target
nucleic acids are allelic variants of one another. In certain
embodiments, the allelic variant contains a single nucleotide
polymorphism (SNP). In certain embodiments, a SNP is associated
with a mutant allele. In certain embodiments, a mutant SNP is
associated with a disease. In certain embodiments a mutant SNP is
associated with a disease, but is not causative of the disease. In
certain embodiments, mRNA and protein expression of a mutant allele
is associated with disease.
[0606] Selectivity of antisense compounds is achieved, principally,
by nucleobase complementarity. For example, if an antisense
compound has no mismatches for a target nucleic acid and one or
more mismatches for a non-target nucleic acid, some amount of
selectivity for the target nucleic acid will result. In certain
embodiments, provided herein are antisense compounds with enhanced
selectivity (i.e. the ratio of activity for the target to the
activity for non-target is greater). For example, in certain
embodiments, a selective nucleoside comprises a particular feature
or combination of features (e.g., chemical modification, motif,
placement of selective nucleoside, and/or self-complementary
region) that increases selectivity of an antisense compound
compared to an antisense compound not having that feature or
combination of features. In certain embodiments, such feature or
combination of features increases antisense activity for the
target. In certain embodiments, such feature or combination of
features decreases activity for the target, but decreases activity
for the non-target by a greater amount, thus resulting in an
increase in selectivity.
[0607] Without being limited by mechanism, enhanced selectivity may
result from a larger difference in the affinity of an antisense
compound for its target compared to its affinity for the non-target
and/or a larger difference in RNase H activity for the resulting
duplexes. For example, in certain embodiments, a selective
antisense compound comprises a modified nucleoside at that same
position as a differentiating nucleobase (i.e., the selective
nucleoside is modified). That modification may increase the
difference in binding affinity of the antisense compound for the
target relative to the non-target. In addition or in the
alternative, the chemical modification may increase the difference
in RNAse H activity for the duplex formed by the antisense compound
and its target compared to the RNase activity for the duplex formed
by the antisense compound and the non-target. For example, the
modification may exaggerate a structure that is less compatible for
RNase H to bind, cleave and/or release the non-target.
[0608] In certain embodiments, an antisense compound binds its
intended target to form a target duplex. In certain embodiments,
RNase H cleaves the target nucleic acid of the target duplex. In
certain such embodiments, there is a primary cleavage site between
two particular nucleosides of the target nucleic acid (the primary
target cleavage site), which accounts for the largest amount of
cleavage of the target nucleic acid. In certain embodiments, there
are one or more secondary target cleavage sites. In certain
embodiments, the same antisense compound hybridizes to a non-target
to form a non-target duplex. In certain such embodiments, the
non-target differs from the target by a single nucleobase within
the target region, and so the antisense compound hybridizes with a
single mismatch. Because of the mismatch, in certain embodiments,
RNase H cleavage of the non-target may be reduced compared to
cleavage of the target, but still occurs. In certain embodiments,
though, the primary site of that cleavage of the non-target nucleic
acid (primary non-target cleavage site) is different from that of
the target. That is; the primary site is shifted due to the
mismatch. In such a circumstance, one may use a modification placed
in the antisense compound to disrupt RNase H cleavage at the
primary non-target cleavage site. Such modification will result in
reduced cleavage of the non-target, but will result little or no
decrease in cleavage of the target. In certain embodiments, the
modification is a modified sugar, nucleobase and/or linkage.
[0609] In certain embodiments, the primary non-target cleavage site
is towards the 5'-end of the antisense compound, and the 5'-end of
an antisense compound may be modified to prevent RNaseH cleavage.
In this manner, it is thought that one having skill in the art may
modify the 5'-end of an antisense compound, or modify the
nucleosides in the gap region of the 5'-end of the antisense
compound, or modify the 3'-most 5'-region nucleosides of the
antisense compound to selectively inhibit RNaseH cleavage of the
non-target nucleic acid duplex while retaining RNase H cleavage of
the target nucleic acid duplex. In certain embodiments, 1-3 of the
3'-most 5'-region nucleosides of the antisense compound comprises a
bicyclic sugar moiety.
[0610] For example, in certain embodiments the target nucleic acid
may have an allelic variant, e.g. a non-target nucleic acid,
containing a single nucleotide polymorphism. An antisense compound
may be designed having a single nucleobase mismatch from the
non-target nucleic acid, but which has full complementarity to the
target nucleic acid. The mismatch between the antisense compound
and the non-target nucleic acid may destabilize the antisense
compound non-target nucleic acid duplex, and consequently the
cleavage site of RNaseH may shift upstream towards the 5'-end of
the antisense compound. Modification of the 5'-end of the antisense
compound or the gap region near the 5'-end of the antisense
compound, or one or more of the 3'-most nucleosides of the 5'-wing
region, will then prevent RNaseH cleavage of the non-target nucleic
acid. Since the target nucleic acid is fully complementary to the
antisense compound, the antisense compound and the target nucleic
acid will form a more stabilized antisense compound-target nucleic
acid duplex and the cleavage site of RnaseH will be more
downstream, towards the 3' end of the antisense compound.
Accordingly, modifications at the 5'-end of the antisense compound
will prevent RNaseH cleavage of the non-target nucleic acid, but
will not substantially effect RNaseH cleavage of the target nucleic
acid, and selectivity between a target nucleic acid and its allelic
variant may be achieved. In certain embodiments, one or more of the
3'-most nucleosides of the 5'-wing region comprises a bicyclic
sugar moiety. In certain embodiments, one or more of the 3'-most
nucleosides of the 5'-wing region comprises a bicyclic sugar moiety
selected from cEt and LNA. In certain embodiments, one or more of
the 3'-most nucleosides of the 5'-wing region comprises cEt. In
certain embodiments, one or more of the 3'-most nucleosides of the
5'-wing region comprises LNA.
[0611] In certain embodiments, the introduction of a mismatch
between an antisense compound and a target nucleic acid may alter
the RNase H cleavage site of a target nucleic acid compared to a
non-target nucleic acid by shifting the RNaseH cleavage site
downstream from the mismatch site and towards the 3'-end of the
antisense compound. In certain embodiments where the cleavage site
of a target nucleic acid compared to a non-target nucleic acid has
shifted downstream towards the 3'-end of the antisense compound,
the 3'-end of an antisense compound may be modified to prevent
RNaseH cleavage. In this manner, it is thought that one having
skill in the art may modify the 3'-end of an antisense compound, or
modify the nucleosides in the gap region near the 3'-end of
antisense compound, to selectively inhibit RNaseH cleavage of the
non-target nucleic acid while retaining RNase H cleavage of the
target nucleic acid.
[0612] For example, in certain embodiments the target nucleic acid
may have an allelic variant, e.g. a non-target nucleic acid,
containing a single nucleotide polymorphism. An antisense compound
may be designed having a single nucleobase mismatch from the
non-target nucleic acid, but which has full complementarity to
target nucleic acid. The mismatch between the antisense compound
and the non-target nucleic acid may destabilize the antisense
compound-non-target nucleic acid duplex, and consequently the
cleavage site of RNaseH may shift downstream towards the 3'-end of
the antisense compound. Modification of the 3'-end of the antisense
compound, or one or more of the 5'-most nucleosides of the 3'-wing
region, or the gap region of the antisense compound near the 3'-end
will then prevent RNaseH cleavage of the non-target nucleic acid.
Since the target nucleic acid is fully complementary to the
antisense compound, the antisense compound and the target nucleic
acid will form a more stabilized antisense compound-target nucleic
acid duplex and the cleavage site of RnaseH will be more upstream,
towards the 5' end of the antisense compound. Accordingly,
modifications at the 3'-end of the antisense compound will prevent
RNaseH cleavage of the non-target nucleic acid, but will not
substantially effect RNaseH cleavage of the target nucleic acid,
and selectivity between a target nucleic acid and its allelic
variant may be achieved. In certain embodiments, one or more of the
5'-most nucleosides of the 3'-wing region comprises a bicyclic
sugar moiety. In certain embodiments, one or more of the 5'-most
nucleosides of the 3'-wing region comprises a bicyclic sugar moiety
selected from cEt and LNA. In certain embodiments, one or more of
the 5'-most nucleosides of the 3'-wing region comprises cEt. In
certain embodiments, one or more of the 5'-most nucleosides of the
3'-wing region comprises LNA.
[0613] In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
longer, may be improved by the addition of one or more bicyclic
nucleosides at the 3'-most 5'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or longer, may be improved by the
addition of two or more bicyclic nucleosides at the 3'-most 5'-wing
nucleoside. In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
longer, may be improved by the addition of one bicyclic nucleoside
at the 3'-most 5'-wing nucleoside. In certain embodiments, the
selectivity of antisense compounds having certain gaps, e.g. gaps
of 7 nucleosides or longer, may be improved by the addition of two
bicyclic nucleosides at the 3'-most 5'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or longer, may be improved by the
addition of three bicyclic nucleosides at the 3'-most 5'-wing
nucleoside. In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
longer, may be improved by the addition of four bicyclic
nucleosides at the 3'-most 5'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or longer, may be improved by the
addition of five bicyclic nucleosides at the 3'-most 5'-wing
nucleoside. In certain embodiments discussed above, the bicyclic
nucleosides at the 3'-most 5'-wing nucleoside are selected from
among cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA. In certain
embodiments discussed above, the bicyclic nucleosides at the
3'-most 5'-wing nucleoside comprise cEt. In certain embodiments
discussed above, the bicyclic nucleosides at the 3'-most 5'-wing
nucleoside comprise LNA.
[0614] In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
longer, may be improved by the addition of one or more bicyclic
nucleosides at the 3'-most 5'-wing nucleoside and the addition of
one or more bicyclic nucleosides at the 5'-most 3'-wing nucleoside.
In certain embodiments, the selectivity of antisense compounds
having certain gaps, e.g. gaps of 7 nucleosides or longer, may be
improved by the addition of two or more bicyclic nucleosides at the
3'-most 5'-wing nucleoside and the addition of one or more bicyclic
nucleosides at the 5'-most 3'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or longer, may be improved by the
addition of one bicyclic nucleoside at the 3'-most 5'-wing
nucleoside and the addition of one or more bicyclic nucleosides at
the 5'-most 3'-wing nucleoside. In certain embodiments, the
selectivity of antisense compounds having certain gaps, e.g. gaps
of 7 nucleosides or longer, may be improved by the addition of two
bicyclic nucleosides at the 3'-most 5'-wing nucleoside and the
addition of one or more bicyclic nucleosides at the 5'-most 3'-wing
nucleoside. In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
longer, may be improved by the addition of three bicyclic
nucleosides at the 3'-most 5'-wing nucleoside and the addition of
one or more bicyclic nucleosides at the 5'-most 3'-wing nucleoside.
In certain embodiments, the selectivity of antisense compounds
having certain gaps, e.g. gaps of 7 nucleosides or longer, may be
improved by the addition of four bicyclic nucleosides at the
3'-most 5'-wing nucleoside and the addition of one or more bicyclic
nucleosides at the 5'-most 3'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or longer, may be improved by the
addition of four bicyclic nucleosides at the 3'-most 5'-wing
nucleoside and the addition of one or more bicyclic nucleosides at
the 5'-most 3'-wing nucleoside.
[0615] In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
shorter, may be improved by the addition of one or more bicyclic
nucleosides at the 3'-most 5'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or shorter, may be improved by the
addition of two or more bicyclic nucleosides at the 3'-most 5'-wing
nucleoside. In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
shorter, may be improved by the addition of one bicyclic nucleoside
at the 3'-most 5'-wing nucleoside. In certain embodiments, the
selectivity of antisense compounds having certain gaps, e.g. gaps
of 7 nucleosides or shorter, may be improved by the addition of two
bicyclic nucleosides at the 3'-most 5'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or shorter, may be improved by the
addition of three bicyclic nucleosides at the 3'-most 5'-wing
nucleoside. In certain embodiments, the selectivity of antisense
compounds having certain gaps, e.g. gaps of 7 nucleosides or
shorter, may be improved by the addition of four bicyclic
nucleosides at the 3'-most 5'-wing nucleoside. In certain
embodiments, the selectivity of antisense compounds having certain
gaps, e.g. gaps of 7 nucleosides or shorter, may be improved by the
addition of five bicyclic nucleosides at the 3'-most 5'-wing
nucleoside. In certain embodiments discussed above, the bicyclic
nucleosides at the 3'-most 5'-wing nucleoside are selected from
among cEt, cMOE, LNA, .alpha.-LNA, ENA and 2'-thio LNA. In certain
embodiments discussed above, the bicyclic nucleosides at the
3'-most 5'-wing nucleoside comprise cEt. In certain embodiments
discussed above, the bicyclic nucleosides at the 3'-most 5'-wing
nucleoside comprise LNA.
[0616] Antisense compounds having certain specified motifs have
enhanced selectivity, including, but not limited to motifs
described above. In certain embodiments, enhanced selectivity is
achieved by oligonucleotides comprising any one or more of:
[0617] a modification motif comprising a long 5'-wing (longer than
5, 6, or 7 nucleosides);
[0618] a modification motif comprising a long 3'-wing (longer than
5, 6, or 7 nucleosides);
[0619] a modification motif comprising a short gap region (shorter
than 8, 7, or 6 nucleosides); and
[0620] a modification motif comprising an interrupted gap region
(having no uninterrupted stretch of unmodified 2'-deoxynucleosides
longer than 7, 6 or 5).
[0621] i. Certain Selective Nucleobase Sequence Elements
[0622] In certain embodiments, selective antisense compounds
comprise nucleobase sequence elements. Such nucleobase sequence
elements are independent of modification motifs. Accordingly,
oligonucleotides having any of the motifs (modification motifs,
nucleoside motifs, sugar motifs, nucleobase modification motifs,
and/or linkage motifs) may also comprise one or more of the
following nucleobase sequence elements.
[0623] ii. Alignment of Differentiating Nucleobase/Target-Selective
Nucleoside
[0624] In certain embodiments, a target region and a region of a
non-target nucleic acid differ by 1-4 differentiating nucleobase.
In such embodiments, selective antisense compounds have a
nucleobase sequence that aligns with the non-target nucleic acid
with 1-4 mismatches. A nucleoside of the antisense compound that
corresponds to a differentiating nucleobase of the target nucleic
acid is referred to herein as a target-selective nucleoside. In
certain embodiments, selective antisense compounds having a gapmer
motif align with a non-target nucleic acid, such that a
target-selective nucleoside is positioned in the gap. In certain
embodiments, a target-selective nucleoside is the 1.sup.st
nucleoside of the gap from the 5' end. In certain embodiments, a
target-selective nucleoside is the 2.sup.nd nucleoside of the gap
from the 5' end. In certain embodiments, a target-selective
nucleoside is the 3.sup.rd nucleoside of the gap from the 5'-end.
In certain embodiments, a target-selective nucleoside is the
4.sup.th nucleoside of the gap from the 5'-end. In certain
embodiments, a target-selective nucleoside is the 5.sup.th
nucleoside of the gap from the 5'-end. In certain embodiments, a
target-selective nucleoside is the 6.sup.rd nucleoside of the gap
from the 5'-end. In certain embodiments, a target-selective
nucleoside is the 8.sup.th nucleoside of the gap from the 3'-end.
In certain embodiments, a target-selective nucleoside is the
7.sup.th nucleoside of the gap from the 3'-end. In certain
embodiments, a target-selective nucleoside is the 6.sup.th
nucleoside of the gap from the 3'-end. In certain embodiments, a
target-selective nucleoside is the 5.sup.th nucleoside of the gap
from the 3'-end. In certain embodiments, a target-selective
nucleoside is the 4.sup.th nucleoside of the gap from the 3'-end.
In certain embodiments, a target-selective nucleoside is the
3.sup.rd nucleoside of the gap from the 3'-end. In certain
embodiments, a target-selective nucleoside is the 2.sup.nd
nucleoside of the gap from the 3'-end.
[0625] In certain embodiments, a target-selective nucleoside
comprises a modified nucleoside. In certain embodiments, a
target-selective nucleoside comprises a modified sugar. In certain
embodiments, a target-selective nucleoside comprises a sugar
surrogate. In certain embodiments, a target-selective nucleoside
comprises a sugar surrogate selected from among HNA and F-HNA. In
certain embodiments, a target-selective nucleoside comprises a
2'-substituted sugar moiety. In certain embodiments, a
target-selective nucleoside comprises a 2'-substituted sugar moiety
selected from among MOE, F and (ara)-F. In certain embodiments, a
target-selective nucleoside comprises a 5'-substituted sugar
moiety. In certain embodiments, a target-selective nucleoside
comprises a 5'-substituted sugar moiety selected from 5'-(R)-Me
DNA. In certain embodiments, a target-selective nucleoside
comprises a bicyclic sugar moiety. In certain embodiments, a
target-selective nucleoside comprises a bicyclic sugar moiety
selected from among cEt, and .alpha.-L-LNA. In certain embodiments,
a target-selective nucleoside comprises a modified nucleobase. In
certain embodiments, a target-selective nucleoside comprises a
modified nucleobase selected from among 2-thio-thymidine and
5-propyne uridine.
[0626] iii. Mismatches to the Target Nucleic Acid
[0627] In certain embodiments, selective antisense compounds
comprise one or more mismatched nucleobases relative to the target
nucleic acid. In certain such embodiments, antisense activity
against the target is reduced by such mismatch, but activity
against the non-target is reduced by a greater amount. Thus, in
certain embodiments selectivity is improved. Any nucleobase other
than the differentiating nucleobase is suitable for a mismatch. In
certain embodiments, however, the mismatch is specifically
positioned within the gap of an oligonucleotide having a gapmer
motif. In certain embodiments, a mismatch relative to the target
nucleic acid is at positions 1, 2, 3, 4, 5, 6, 7, or 8 from the
5'-end of the gap region. In certain embodiments, a mismatch
relative to the target nucleic acid is at positions 9, 8, 7, 6, 5,
4, 3, 2, 1 of the antisense compounds from the 3'-end of the gap
region. In certain embodiments, a mismatch relative to the target
nucleic acid is at positions 1, 2, 3, or 4 of the antisense
compounds from the 5'-end of the wing region. In certain
embodiments, a mismatch relative to the target nucleic acid is at
positions 4, 3, 2, or 1 of the antisense compounds from the 3'-end
of the wing region.
[0628] iv. Self Complementary Regions
[0629] In certain embodiments, selective antisense compounds
comprise a region that is not complementary to the target. In
certain embodiments, such region is complementary to another region
of the antisense compound. Such regions are referred to herein as
self-complementary regions. For example, in certain embodiments, an
antisense compound has a first region at one end that is
complementary to a second region at the other end. In certain
embodiments, one of the first and second regions is complementary
to the target nucleic acid. Unless the target nucleic acid also
includes a self-complementary region, the other of the first and
second region of the antisense compound will not be complementary
to the target nucleic acid. For illustrative purposes, certain
antisense compounds have the following nucleobase motif:
TABLE-US-00014 ABCXXXXXXXXXC'B'A'; ABCXXXXXXX(X/C')(X/B')(X/A');
(X/A)(X/B)(X/C)XXXXXXXXXC'B'A'
where each of A, B, and C are any nucleobase; A', B', and C' are
the complementary bases to A, B, and C, respectively; each X is a
nucleobase complementary to the target nucleic acid; and two
letters in parentheses (e.g., (X/C')) indicates that the nucleobase
is complementary to the target nucleic acid and to the designated
nucleoside within the antisense oligonucleotide.
[0630] Without being bound to any mechanism, in certain
embodiments, such antisense compounds are expected to form
self-structure, which is disrupted upon contact with a target
nucleic acid. Contact with a non-target nucleic acid is expected to
disrupt the self-structure to a lesser degree, thus increasing
selectivity compared to the same antisense compound lacking the
self-complementary regions.
[0631] v. Combinations of Features
[0632] Though it is clear to one of skill in the art, the above
motifs and other elements for increasing selectivity may be used
alone or in combination. For example, a single antisense compound
may include any one, two, three, or more of: self-complementary
regions, a mismatch relative to the target nucleic acid, a short
nucleoside gap, an interrupted gap, and specific placement of the
selective nucleoside.
D. CERTAIN SHORT GAP ANTISENSE COMPOUNDS
[0633] In certain embodiments, an antisense compound of interest
may modulate the expression of a target nucleic acid but possess
undesirable properties. In certain embodiments, for example, an
antisense compound of interest may have an undesirably high
affinity for one or more non-target nucleic acids. In certain
embodiments, whether as a result of such affinity for one or more
non-target nucleic acid or by some other mechanism, an antisense
compound of interest may produce undesirable increases in ALT
and/or AST levels when administered to an animal. In certain
embodiments, such an antisense compound of interest may produce
undesirable increases in organ weight.
[0634] In certain such embodiments wherein an antisense compound of
interest effectively modulates the expression of a target nucleic
acid, but possess one or more undesirable properties, a person
having skill in the art may selectively incorporate one or more
modifications into the antisense compound of interest that retain
some or all of the desired property of effective modulation of
expression of a target nucleic acid while reducing one or more of
the antisense compound's undesirable properties. In certain
embodiments, the present invention provides methods of altering
such an antisense compound of interest to form an improved
antisense compound. In certain embodiments, altering the number of
nucleosides in the 5'-region, the 3'-region, and/or the central
region of such an antisense compound of interest results in
improved properties. For example, in certain embodiments, one may
alter the modification state of one or more nucleosides at or near
the 5'-end of the central region. Having been altered, those
nucleosides may then be characterized as being part of the
5'-region. Thus, in such embodiments, the overall number of
nucleosides of the 5'-region is increased and the number of
nucleosides in the central region is decreased. For example, an
antisense compound having a modification motif of 3-10-3 could be
altered to result in an improved antisense compound having a
modification motif of 4-9-3 or 5-8-3. In certain embodiments, the
modification state of one or more of nucleosides at or near the
3'-end of the central region may likewise be altered. In certain
embodiments, the modification of one or more of the nucleosides at
or near the 5'-end and the 3'-end of the central region may be
altered. In such embodiments in which one or more nucleosides at or
near the 5'-end and the 3'-end of the central region is altered the
central region becomes shorter relative to the central region of
the original antisense compound of interest. In such embodiments,
the modifications to the one or more nucleosides that had been part
of the central region are the same as one or more modification that
had been present in the 5'-region and/or the 3'-region of the
original antisense compound of interest. In certain embodiments,
the improved antisense compound having a shortened central region
may retain its ability to effectively modulate the expression of a
target nucleic acid, but not possess some or all of the undesirable
properties possessed by antisense compound of interest having a
longer central region. In certain embodiments, reducing the length
of the central region reduces affinity for off-target nucleic
acids. In certain embodiments, reducing the length of the central
region results in reduced cleavage of non-target nucleic acids by
RNase H. In certain embodiments, reducing the length of the central
region does not produce undesirable increases in ALT levels. In
certain embodiments, reducing the length of the central region does
not produce undesirable increases in AST levels. In certain
embodiments, reducing the length of the central region does not
produce undesirable increases organ weights.
[0635] In certain embodiments it is possible to retain the same
nucleobase sequence and overall length of an antisense compound
while decreasing the length of the central region. In certain
embodiments retaining the same nucleobase sequence and overall
length of an antisense compound while decreasing the length of the
central region ameliorates one or more undesirable properties of an
antisense compound. In certain embodiments retaining the same
nucleobase sequence and overall length of an antisense compound
while decreasing the length of the central region ameliorates one
or more undesirable properties of an antisense compound but does
not substantially affect the ability of the antisense compound to
modulate expression of a target nucleic acid. In certain such
embodiments, two or more antisense compounds would have the same
overall length and nucleobase sequence, but would have a different
central region length, and different properties. In certain
embodiments, the length of the central region is 9 nucleobases. In
certain embodiments, the length of the central region is 8
nucleobases. In certain embodiments, the length of the central
region is 7 nucleobases. In certain embodiments, the central region
consists of unmodified deoxynucleosides. In certain embodiments,
the length of the central region can be decreased by increasing the
length of the 5'-region, the 3'-region, or both the 5'-region and
the 3'-region.
[0636] In certain embodiments, the length of the central region can
be decreased by increasing the length of the 5'-region with
modified nucleosides. In certain embodiments, the length of the
central region can be decreased by increasing the length of the
5'-region with modified nucleosides. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 5'-region with modified nucleosides comprising a
bicyclic sugar moiety selected from among: cEt, cMOE, LNA,
.alpha.-LNA, ENA and 2'-thio LNA. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 5'-region with a cEt substituted sugar moiety.
[0637] In certain embodiments, the length of the central region can
be decreased by increasing the length of the 5'-region with
modified nucleosides. In certain embodiments, the length of the
central region can be decreased by increasing the length of the
5'-region with modified nucleosides. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 5'-region with modified nucleosides comprising a
bicyclic sugar moiety comprising a 2' substituent selected from
among: a halogen, OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3,
OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2,
O(CH.sub.2).sub.2--OCH.sub.3 (MOE),
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 5'-region with 2'-O(CH.sub.2).sub.2--OCH.sub.3 (MOE)
substituted sugar moiety.
[0638] In certain embodiments, the length of the central region can
be decreased by increasing the length of the 3'-region with
modified nucleosides. In certain embodiments, the length of the
central region can be decreased by increasing the length of the
3'-region with modified nucleosides. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 3'-region with modified nucleosides comprising a
bicyclic sugar moiety selected from among: cEt, cMOE, LNA,
.alpha.-LNA, ENA and 2'-thio LNA. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 3'-region with a cEt substituted sugar moiety.
[0639] In certain embodiments, the length of the central region can
be decreased by increasing the length of the 3'-region with
modified nucleosides. In certain embodiments, the length of the
central region can be decreased by increasing the length of the
3'-region with modified nucleosides. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 3'-region with modified nucleosides comprising a
bicyclic sugar moiety comprising a 2' substituent selected from
among: a halogen, OCH.sub.3, OCF.sub.3, OCH.sub.2CH.sub.3,
OCH.sub.2CF.sub.3, OCH.sub.2--CH.dbd.CH.sub.2,
O(CH.sub.2).sub.2--OCH.sub.3 (MOE),
O(CH.sub.2).sub.2--O(CH.sub.2).sub.2--N(CH.sub.3).sub.2,
OCH.sub.2C(.dbd.O)--N(H)CH.sub.3,
OCH.sub.2C(.dbd.O)--N(H)--(CH.sub.2).sub.2--N(CH.sub.3).sub.2, and
OCH.sub.2--N(H)--C(.dbd.NH)NH.sub.2. In certain embodiments, the
length of the central region can be decreased by increasing the
length of the 3'-region with 2'-O(CH.sub.2).sub.2--OCH.sub.3 (MOE)
substituted sugar moiety.
[0640] In certain embodiments, the length of the central region can
be decreased by increasing the length of the 5'-region with
modified nucleosides and increasing the length of the 3'-region
with modified nucleosides.
E. CERTAIN TARGET NUCLEIC ACIDS
[0641] In certain embodiments, antisense compounds comprise or
consist of an oligonucleotide comprising a region that is
complementary to a target nucleic acid. In certain embodiments, the
target nucleic acid is an endogenous RNA molecule. In certain
embodiments, the target nucleic acid is a non-coding RNA. In
certain such embodiments, the target non-coding RNA is selected
from: a long-non-coding RNA, a short non-coding RNA, an intronic
RNA molecule, a snoRNA, a scaRNA, a microRNA (including
pre-microRNA and mature microRNA), a ribosomal RNA, and promoter
directed RNA. In certain embodiments, the target nucleic acid
encodes a protein. In certain such embodiments, the target nucleic
acid is selected from: an mRNA and a pre-mRNA, including intronic,
exonic and untranslated regions. In certain embodiments, oligomeric
compounds are at least partially complementary to more than one
target nucleic acid. For example, antisense compounds of the
present invention may mimic microRNAs, which typically bind to
multiple targets.
[0642] In certain embodiments, the target nucleic acid is a nucleic
acid other than a mature mRNA. In certain embodiments, the target
nucleic acid is a nucleic acid other than a mature mRNA or a
microRNA. In certain embodiments, the target nucleic acid is a
non-coding RNA other than a microRNA. In certain embodiments, the
target nucleic acid is a non-coding RNA other than a microRNA or an
intronic region of a pre-mRNA. In certain embodiments, the target
nucleic acid is a long non-coding RNA. In certain embodiments, the
target RNA is an mRNA. In certain embodiments, the target nucleic
acid is a pre-mRNA. In certain such embodiments, the target region
is entirely within an intron. In certain embodiments, the target
region spans an intron/exon junction. In certain embodiments, the
target region is at least 50% within an intron. In certain
embodiments, the target nucleic acid is selected from among
non-coding RNA, including exonic regions of pre-mRNA. In certain
embodiments, the target nucleic acid is a ribosomal RNA (rRNA). In
certain embodiments, the target nucleic acid is a non-coding RNA
associated with splicing of other pre-mRNAs. In certain
embodiments, the target nucleic acid is a nuclear-retained
non-coding RNA.
[0643] In certain embodiments, antisense compounds described herein
are complementary to a target nucleic acid comprising a
single-nucleotide polymorphism. In certain such embodiments, the
antisense compound is capable of modulating expression of one
allele of the single-nucleotide polymorphism-containing-target
nucleic acid to a greater or lesser extent than it modulates
another allele. In certain embodiments an antisense compound
hybridizes to a single-nucleotide polymorphism-containing-target
nucleic acid at the single-nucleotide polymorphism site. In certain
embodiments, the target nucleic acid is a Huntingtin gene
transcript. In certain embodiments, the target nucleic acid is a
single-nucleotide polymorphism-containing-target nucleic acid of a
Huntingtin gene transcript. In certain embodiments, the target
nucleic acid is not a Huntingtin gene transcript. In certain
embodiments, the target nucleic acid is a single-nucleotide
polymorphism-containing-target nucleic acid of a gene transcript
other than Huntingtin. In certain embodiments, the target nucleic
acid is any nucleic acid other than a Huntingtin gene
transcript.
[0644] a. Single-Nucleotide Polymorphism
[0645] In certain embodiments, the invention provides selective
antisense compounds that have greater activity for a target nucleic
acid than for a homologous or partially homologous non-target
nucleic acid. In certain such embodiments, the target and
non-target nucleic acids are not functionally related to one
another (e.g., are transcripts from different genes). In certain
embodiments, the target and not-target nucleic acids are allelic
variants of one another. Certain embodiments of the present
invention provide methods, compounds, and compositions for
selectively inhibiting mRNA and protein expression of an allelic
variant of a particular gene or DNA sequence. In certain
embodiments, the allelic variant contains a single nucleotide
polymorphism (SNP). In certain embodiments, a SNP is associated
with a mutant allele. In certain embodiments, a mutant SNP is
associated with a disease. In certain embodiments a mutant SNP is
associated with a disease, but is not causative of the disease. In
certain embodiments, mRNA and protein expression of a mutant allele
is associated with disease.
[0646] In certain embodiments, the expressed gene product of a
mutant allele results in aggregation of the mutant proteins causing
disease. In certain embodiments, the expressed gene product of a
mutant allele results in gain of function causing disease. In
certain embodiments, genes with an autosomal dominant mutation
resulting in a toxic gain of function of the protein are the APP
gene encoding amyloid precursor protein involved in Alzheimer's
disease (Gene, 371: 68, 2006); the PrP gene encoding prion protein
involved in Creutzfeldt-Jakob disease and in fatal familial
insomnia (Nat. Med. 1997, 3: 1009); GFAP gene encoding glial
fibrillary acidic protein involved in Alexander disease (J.
Neurosci. 2006, 26:111623); alpha-synuclein gene encoding
alpha-synuclein protein involved in Parkinson's disease (J. Clin.
Invest. 2003, 111: 145); SOD-1 gene encoding the SOD-1 protein
involved in amyotrophic lateral sclerosis (Science 1998, 281:
1851); atrophin-1 gene encoding atrophin-1 protein involved in
dentato-rubral and pallido-luysian atrophy (DRPA) (Trends Mol. Med.
2001, 7: 479); SCA1 gene encoding ataxin-1 protein involved in
spino-cerebellar ataxia-1 (SCA1) (Protein Sci. 2003, 12: 953); PLP
gene encoding proteolipid protein involved in Pelizaeus-Merzbacher
disease (NeuroMol. Med. 2007, 4: 73); DYT1 gene encoding torsinA
protein involved in Torsion dystonia (Brain Res. 2000, 877: 379);
and alpha-B crystalline gene encoding alpha-B crystalline protein
involved in protein aggregation diseases, including cardiomyopathy
(Cell 2007, 130: 427); alpha1-antitrypsin gene encoding
alpha1-antitrypsin protein involved in chronic obstructive
pulmonary disease (COPD), liver disease and hepatocellular
carcinoma (New Engl J. Med. 2002, 346: 45); Ltk gene encoding
leukocyte tyrosine kinase protein involved in systemic lupus
erythematosus (Hum. Mol. Gen. 2004, 13: 171); PCSK9 gene encoding
PCSK9 protein involved in hypercholesterolemia (Hum Mutat. 2009,
30: 520); prolactin receptor gene encoding prolactin receptor
protein involved in breast tumors (Proc. Natl. Assoc. Sci. 2008,
105: 4533); CCL5 gene encoding the chemokine CCL5 involved in COPD
and asthma (Eur. Respir. J. 2008, 32: 327); PTPN22 gene encoding
PTPN22 protein involved in Type 1 diabetes, Rheumatoid arthritis,
Graves disease, and SLE (Proc. Natl. Assoc. Sci. 2007, 104: 19767);
androgen receptor gene encoding the androgen receptor protein
involved in spinal and bulbar muscular atrophy or Kennedy's disease
(J Steroid Biochem. Mol. Biol. 2008, 108: 245); CHMP4B gene
encoding chromatin modifying protein-4B involved in progressive
childhood posterior subcapsular cataracts (Am. J. Hum. Genet. 2007,
81: 596); FXR/NR1H4 gene encoding Farnesoid X receptor protein
involved in cholesterol gallstone disease, arthrosclerosis and
diabetes (Mol. Endocrinol. 2007, 21: 1769); ABCA1 gene encoding
ABCA1 protein involved in cardiovascular disease (Transl. Res.
2007, 149: 205); CaSR gene encoding the calcium sensing receptor
protein involved in primary hypercalciuria (Kidney Int. 2007, 71:
1155); alpha-globin gene encoding alpha-globin protein involved in
alpha-thallasemia (Science 2006, 312: 1215); httlpr gene encoding
HTTLPR protein involved in obsessive compulsive disorder (Am. J.
Hum. Genet. 2006, 78: 815); AVP gene encoding arginine vasopressin
protein in stress-related disorders such as anxiety disorders and
comorbid depression (CNS Neurol. Disord. Drug Targets 2006, 5:
167); GNAS gene encoding G proteins involved in congenital visual
defects, hypertension, metabolic syndrome (Trends Pharmacol. Sci.
2006, 27: 260); APAF1 gene encoding APAF1 protein involved in a
predisposition to major depression (Mol. Psychiatry. 2006, 11: 76);
TGF-beta1 gene encoding TGF-beta1 protein involved in breast cancer
and prostate cancer (Cancer Epidemiol. Biomarkers Prev. 2004, 13:
759); AChR gene encoding acetylcholine receptor involved in
congential myasthenic syndrome (Neurology 2004, 62: 1090); P2Y12
gene encoding adenosine diphosphate (ADP) receptor protein involved
in risk of peripheral arterial disease (Circulation 2003, 108:
2971); LQT1 gene encoding LQT1 protein involved in atrial
fibrillation (Cardiology 2003, 100: 109); RET protooncogene
encoding RET protein involved in sporadic pheochromocytoma (J.
Clin. Endocrinol. Metab. 2003, 88: 4911); filamin A gene encoding
filamin A protein involved in various congenital malformations
(Nat. Genet. 2003, 33: 487); TARDBP gene encoding TDP-43 protein
involved in amyotrophic lateral sclerosis (Hum. Mol. Gene.t 2010,
19: 671); SCA3 gene encoding ataxin-3 protein involved in
Machado-Joseph disease (PLoS One 2008, 3: e3341); SCAT gene
encoding ataxin-7 protein involved in spino-cerebellar ataxia-7
(PLoS One 2009, 4: e7232); and HTT gene encoding huntingtin protein
involved in Huntington's disease (Neurobiol Dis. 1996, 3:183); and
the CA4 gene encoding carbonic anhydrase 4 protein, CRX gene
encoding cone-rod homeobox transcription factor protein, FSCN2 gene
encoding retinal fascin homolog 2 protein, IMPDH1 gene encoding
inosine monophosphate dehydrogenase 1 protein, NR2E3 gene encoding
nuclear receptor subfamily 2 group E3 protein, NRL gene encoding
neural retina leucine zipper protein, PRPF3 (RP18) gene encoding
pre-mRNA splicing factor 3 protein, PRPF8 (RP13) gene encoding
pre-mRNA splicing factor 8 protein, PRPF31 (RP11) gene encoding
pre-mRNA splicing factor 31 protein, RDS gene encoding peripherin 2
protein, ROM1 gene encoding rod outer membrane protein 1 protein,
RHO gene encoding rhodopsin protein, RP1 gene encoding RP1 protein,
RPGR gene encoding retinitis pigmentosa GTPase regulator protein,
all of which are involved in Autosomal Dominant Retinitis
Pigmentosa disease (Adv Exp Med. Biol. 2008, 613:203)
[0647] In certain embodiments, the mutant allele is associated with
any disease from the group consisting of Alzheimer's disease,
Creutzfeldt-Jakob disease, fatal familial insomnia, Alexander
disease, Parkinson's disease, amyotrophic lateral sclerosis,
dentato-rubral and pallido-luysian atrophy DRPA, spino-cerebellar
ataxia, Torsion dystonia, cardiomyopathy, chronic obstructive
pulmonary disease (COPD), liver disease, hepatocellular carcinoma,
systemic lupus erythematosus, hypercholesterolemia, breast cancer,
asthma, Type 1 diabetes, Rheumatoid arthritis, Graves disease, SLE,
spinal and bulbar muscular atrophy, Kennedy's disease, progressive
childhood posterior subcapsular cataracts, cholesterol gallstone
disease, arthrosclerosis, cardiovascular disease, primary
hypercalciuria, alpha-thallasemia, obsessive compulsive disorder,
Anxiety, comorbid depression, congenital visual defects,
hypertension, metabolic syndrome, prostate cancer, congential
myasthenic syndrome, peripheral arterial disease, atrial
fibrillation, sporadic pheochromocytoma, congenital malformations,
Machado-Joseph disease, Huntington's disease, and Autosomal
Dominant Retinitis Pigmentosa disease.
[0648] i. Certain Huntingtin Targets
[0649] In certain embodiments, an allelic variant of huntingtin is
selectively reduced. Nucleotide sequences that encode huntingtin
include, without limitation, the following: GENBANK Accession No.
NT.sub.--006081.18, truncated from nucleotides 1566000 to 1768000
(replaced by GENBANK Accession No. NT.sub.--006051), incorporated
herein as SEQ ID NO: 1, and NM.sub.--002111.6, incorporated herein
as SEQ ID NO: 2.
[0650] Table 14 provides SNPs found in the GM04022, GM04281,
GM02171, and GM02173B cell lines. Also provided are the allelic
variants found at each SNP position, the genotype for each of the
cell lines, and the percentage of HD patients having a particular
allelic variant. For example, the two allelic variants for SNP
rs6446723 are T and C. The GM04022 cell line is heterozygous TC,
the GM02171 cell line is homozygous CC, the GM02173 cell line is
heterozygous TC, and the GM04281 cell line is homozygous TT. Fifty
percent of HD patients have a T at SNP position rs6446723.
TABLE-US-00015 TABLE 14 Allelic Variations for SNPs Associated with
HD SNP Variation GM04022 GM02171 GM02173 GM04281 TargetPOP allele
rs6446723 T/C TC CC TC TT 0.50 T rs3856973 A/G AG AA AG GG 0.50 G
rs2285086 A/G AG GG AG AA 0.50 A rs363092 A/C AC AA AC CC 0.49 C
rs916171 C/G GC GG GC CC 0.49 C rs6844859 T/C TC CC TC TT 0.49 T
rs7691627 A/G AG AA AG GG 0.49 G rs4690073 A/G AG AA AG GG 0.49 G
rs2024115 A/G AG GG AG AA 0.48 A rs11731237 T/C CC CC TC TT 0.43 T
rs362296 A/C CC AC AC AC 0.42 C rs10015979 A/G AA AA AG GG 0.42 G
rs7659144 C/G CG CG CG CC 0.41 C rs363096 T/C CC CC TC TT 0.40 T
rs362273 A/G AA AG AG AA 0.39 A rs16843804 T/C CC TC TC CC 0.38 C
rs362271 A/G GG AG AG GG 0.38 G rs362275 T/C CC TC TC CC 0.38 C
rs3121419 T/C CC TC TC CC 0.38 C rs362272 A/G GG -- AG GG 0.38 G
rs3775061 A/G AA AG AG AA 0.38 A rs34315806 T/C CC TC TC CC 0.38 C
rs363099 T/C CC TC TC CC 0.38 C rs2298967 T/C TT TC TC TT 0.38 T
rs363088 A/T AA TA TA AA 0.38 A rs363064 T/C CC TC TC CC 0.35 C
rs363102 A/G AG AA AA AA 0.23 G rs2798235 A/G AG GG GG GG 0.21 A
rs363080 T/C TC CC CC CC 0.21 T rs363072 A/T TA TA AA AA 0.13 A
rs363125 A/C AC AC CC CC 0.12 C rs362303 T/C TC TC CC CC 0.12 C
rs362310 T/C TC TC CC CC 0.12 C rs10488840 A/G AG AG GG GG 0.12 G
rs362325 T/C TC TC TT TT 0.11 T rs35892913 A/G GG GG GG GG 0.10 A
rs363102 A/G AG AA AA AA 0.09 A rs363096 T/C CC CC TC TT 0.09 C
rs11731237 T/C CC CC TC TT 0.09 C rs10015979 A/G AA AA AG GG 0.08 A
rs363080 T/C TC CC CC CC 0.07 C rs2798235 A/G AG GG GG GG 0.07 G
rs1936032 C/G GC CC CC CC 0.06 C rs2276881 A/G GG GG GG GG 0.06 G
rs363070 A/G AA AA AA AA 0.06 A rs35892913 A/G GG GG GG GG 0.04 G
rs12502045 T/C CC CC CC CC 0.04 C rs6446723 T/C TC CC TC TT 0.04 C
rs7685686 A/G AG GG AG AA 0.04 G rs3733217 T/C CC CC CC CC 0.03 C
rs6844859 T/C TC CC TC TT 0.03 C rs362331 T/C TC CC TC TT 0.03
C
F. CERTAIN INDICATIONS
[0651] In certain embodiments, provided herein are methods of
treating an animal or individual comprising administering one or
more pharmaceutical compositions as described herein. In certain
embodiments, the individual or animal has Huntington's disease.
[0652] In certain embodiments, compounds targeted to huntingtin as
described herein may be administered to reduce the severity of
physiological symptoms of Huntington's disease. In certain
embodiments, compounds targeted to huntingtin as described herein
may be administered to reduce the rate of degeneration in an
individual or an animal having Huntington's disease. In certain
embodiments, compounds targeted to huntingtin as described herein
may be administered regeneration function in an individual or an
animal having Huntington's disease. In certain embodiments,
symptoms of Huntingtin's disease may be reversed by treatment with
a compound as described herein.
[0653] In certain embodiments, compounds targeted to huntingtin as
described herein may be administered to ameliorate one or more
symptoms of Huntington's disease. In certain embodiments
administration of compounds targeted to huntingtin as described
herein may improve the symptoms of Huntington's disease as measured
by any metric known to those having skill in the art. In certain
embodiments, administration of compounds targeted to huntingtin as
described herein may improve a rodent's rotaraod assay performance.
In certain embodiments, administration of compounds targeted to
huntingtin as described herein may improve a rodent's plus maze
assay. In certain embodiments, administration of compounds targeted
to huntingtin as described herein may improve a rodent's open field
assay performance.
[0654] Accordingly, provided herein are methods for ameliorating a
symptom associated with Huntington's disease in a subject in need
thereof. In certain embodiments, provided is a method for reducing
the rate of onset of a symptom associated with Huntington's
disease. In certain embodiments, provided is a method for reducing
the severity of a symptom associated with Huntington's disease. In
certain embodiments, provided is a method for regenerating
neurological function as shown by an improvement of a symptom
associated with Huntington's disease. In such embodiments, the
methods comprise administering to an individual or animal in need
thereof a therapeutically effective amount of a compound targeted
to a huntingtin nucleic acid.
[0655] Huntington's disease is characterized by numerous physical,
neurological, psychiatric, and/or peripheral symptoms. Any symptom
known to one of skill in the art to be associated with Huntington's
disease can be ameliorated or otherwise modulated as set forth
above in the methods described above. In certain embodiments, the
symptom is a physical symptom selected from the group consisting of
restlessness, lack of coordination, unintentionally initiated
motions, unintentionally uncompleted motions, unsteady gait,
chorea, rigidity, writhing motions, abnormal posturing,
instability, abnormal facial expressions, difficulty chewing,
difficulty swallowing, difficulty speaking, seizure, and sleep
disturbances. In certain embodiments, the symptom is a cognitive
symptom selected from the group consisting of impaired planning,
impaired flexibility, impaired abstract thinking, impaired rule
acquisition, impaired initiation of appropriate actions, impaired
inhibition of inappropriate actions, impaired short-term memory,
impaired long-term memory, paranoia, disorientation, confusion,
hallucination and dementia. In certain embodiments, the symptom is
a psychiatric symptom selected from the group consisting of
anxiety, depression, blunted affect, egocentrisms, aggression,
compulsive behavior, irritability and suicidal ideation. In certain
embodiments, the symptom is a peripheral symptom selected from the
group consisting of reduced brain mass, muscle atrophy, cardiac
failure, impaired glucose tolerance, weight loss, osteoporosis, and
testicular atrophy.
[0656] In certain embodiments, the symptom is restlessness. In
certain embodiments, the symptom is lack of coordination. In
certain embodiments, the symptom is unintentionally initiated
motions. In certain embodiments, the symptom is unintentionally
uncompleted motions. In certain embodiments, the symptom is
unsteady gait. In certain embodiments, the symptom is chorea. In
certain embodiments, the symptom is rigidity. In certain
embodiments, the symptom is writhing motions. In certain
embodiments, the symptom is abnormal posturing. In certain
embodiments, the symptom is instability. In certain embodiments,
the symptom is abnormal facial expressions. In certain embodiments,
the symptom is difficulty chewing. In certain embodiments, the
symptom is difficulty swallowing. In certain embodiments, the
symptom is difficulty speaking. In certain embodiments, the symptom
is seizures. In certain embodiments, the symptom is sleep
disturbances.
[0657] In certain embodiments, the symptom is impaired planning. In
certain embodiments, the symptom is impaired flexibility. In
certain embodiments, the symptom is impaired abstract thinking. In
certain embodiments, the symptom is impaired rule acquisition. In
certain embodiments, the symptom is impaired initiation of
appropriate actions. In certain embodiments, the symptom is
impaired inhibition of inappropriate actions. In certain
embodiments, the symptom is impaired short-term memory. In certain
embodiments, the symptom is impaired long-term memory. In certain
embodiments, the symptom is paranoia. In certain embodiments, the
symptom is disorientation. In certain embodiments, the symptom is
confusion. In certain embodiments, the symptom is hallucination. In
certain embodiments, the symptom is dementia.
[0658] In certain embodiments, the symptom is anxiety. In certain
embodiments, the symptom is depression. In certain embodiments, the
symptom is blunted affect. In certain embodiments, the symptom is
egocentrism. In certain embodiments, the symptom is aggression. In
certain embodiments, the symptom is compulsive behavior. In certain
embodiments, the symptom is irritability. In certain embodiments,
the symptom is suicidal ideation.
[0659] In certain embodiments, the symptom is reduced brain mass.
In certain embodiments, the symptom is muscle atrophy. In certain
embodiments, the symptom is cardiac failure. In certain
embodiments, the symptom is impaired glucose tolerance. In certain
embodiments, the symptom is weight loss. In certain embodiments,
the symptom is osteoporosis. In certain embodiments, the symptom is
testicular atrophy.
[0660] In certain embodiments, symptoms of Huntington's disease may
be quantifiable. For example, osteoporosis may be measured and
quantified by, for example, bone density scans. For such symptoms,
in certain embodiments, the symptom may be reduced by about 15, 20,
25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 99%,
or a range defined by any two of these values.
[0661] In certain embodiments, provided are methods of treating an
individual comprising administering one or more pharmaceutical
compositions as described herein. In certain embodiments, the
individual has Huntington's disease.
[0662] In certain embodiments, administration of an antisense
compound targeted to a huntingtin nucleic acid results in reduction
of huntingtin expression by at least about 15, 20, 25, 30, 35, 40,
45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 99%, or a range
defined by any two of these values.
[0663] In certain embodiments, pharmaceutical compositions
comprising an antisense compound targeted to huntingtin are used
for the preparation of a medicament for treating a patient
suffering or susceptible to Huntington's disease.
G. CERTAIN PHARMACEUTICAL COMPOSITIONS
[0664] In certain embodiments, the present invention provides
pharmaceutical compositions comprising one or more antisense
compound. In certain embodiments, such pharmaceutical composition
comprises a suitable pharmaceutically acceptable diluent or
carrier. In certain embodiments, a pharmaceutical composition
comprises a sterile saline solution and one or more antisense
compound. In certain embodiments, such pharmaceutical composition
consists of a sterile saline solution and one or more antisense
compound. In certain embodiments, the sterile saline is
pharmaceutical grade saline. In certain embodiments, a
pharmaceutical composition comprises one or more antisense compound
and sterile water. In certain embodiments, a pharmaceutical
composition consists of one or more antisense compound and sterile
water. In certain embodiments, the sterile saline is pharmaceutical
grade water. In certain embodiments, a pharmaceutical composition
comprises one or more antisense compound and phosphate-buffered
saline (PBS). In certain embodiments, a pharmaceutical composition
consists of one or more antisense compound and sterile
phosphate-buffered saline (PBS). In certain embodiments, the
sterile saline is pharmaceutical grade PBS.
[0665] In certain embodiments, antisense compounds may be admixed
with pharmaceutically acceptable active and/or inert substances for
the preparation of pharmaceutical compositions or formulations.
Compositions and methods for the formulation of pharmaceutical
compositions depend on a number of criteria, including, but not
limited to, route of administration, extent of disease, or dose to
be administered.
[0666] Pharmaceutical compositions comprising antisense compounds
encompass any pharmaceutically acceptable salts, esters, or salts
of such esters. In certain embodiments, pharmaceutical compositions
comprising antisense compounds comprise one or more oligonucleotide
which, upon administration to an animal, including a human, is
capable of providing (directly or indirectly) the biologically
active metabolite or residue thereof. Accordingly, for example, the
disclosure is also drawn to pharmaceutically acceptable salts of
antisense compounds, prodrugs, pharmaceutically acceptable salts of
such prodrugs, and other bioequivalents. Suitable pharmaceutically
acceptable salts include, but are not limited to, sodium and
potassium salts.
[0667] A prodrug can include the incorporation of additional
nucleosides at one or both ends of an oligomeric compound which are
cleaved by endogenous nucleases within the body, to form the active
antisense oligomeric compound.
[0668] Lipid moieties have been used in nucleic acid therapies in a
variety of methods. In certain such methods, the nucleic acid is
introduced into preformed liposomes or lipoplexes made of mixtures
of cationic lipids and neutral lipids. In certain methods, DNA
complexes with mono- or poly-cationic lipids are formed without the
presence of a neutral lipid. In certain embodiments, a lipid moiety
is selected to increase distribution of a pharmaceutical agent to a
particular cell or tissue. In certain embodiments, a lipid moiety
is selected to increase distribution of a pharmaceutical agent to
fat tissue. In certain embodiments, a lipid moiety is selected to
increase distribution of a pharmaceutical agent to muscle
tissue.
[0669] In certain embodiments, pharmaceutical compositions provided
herein comprise one or more modified oligonucleotides and one or
more excipients. In certain such embodiments, excipients are
selected from water, salt solutions, alcohol, polyethylene glycols,
gelatin, lactose, amylase, magnesium stearate, talc, silicic acid,
viscous paraffin, hydroxymethylcellulose and
polyvinylpyrrolidone.
[0670] In certain embodiments, a pharmaceutical composition
provided herein comprises a delivery system. Examples of delivery
systems include, but are not limited to, liposomes and emulsions.
Certain delivery systems are useful for preparing certain
pharmaceutical compositions including those comprising hydrophobic
compounds. In certain embodiments, certain organic solvents such as
dimethylsulfoxide are used.
[0671] In certain embodiments, a pharmaceutical composition
provided herein comprises one or more tissue-specific delivery
molecules designed to deliver the one or more pharmaceutical agents
of the present invention to specific tissues or cell types. For
example, in certain embodiments, pharmaceutical compositions
include liposomes coated with a tissue-specific antibody.
[0672] In certain embodiments, a pharmaceutical composition
provided herein comprises a co-solvent system. Certain of such
co-solvent systems comprise, for example, benzyl alcohol, a
nonpolar surfactant, a water-miscible organic polymer, and an
aqueous phase. In certain embodiments, such co-solvent systems are
used for hydrophobic compounds. A non-limiting example of such a
co-solvent system is the VPD co-solvent system, which is a solution
of absolute ethanol comprising 3% w/v benzyl alcohol, 8% w/v of the
nonpolar surfactant Polysorbate 80.TM. and 65% w/v polyethylene
glycol 300. The proportions of such co-solvent systems may be
varied considerably without significantly altering their solubility
and toxicity characteristics. Furthermore, the identity of
co-solvent components may be varied: for example, other surfactants
may be used instead of Polysorbate 80.TM.; the fraction size of
polyethylene glycol may be varied; other biocompatible polymers may
replace polyethylene glycol, e.g., polyvinyl pyrrolidone; and other
sugars or polysaccharides may substitute for dextrose.
[0673] In certain embodiments, a pharmaceutical composition
provided herein is prepared for oral administration. In certain
embodiments, pharmaceutical compositions are prepared for buccal
administration.
[0674] In certain embodiments, a pharmaceutical composition is
prepared for administration by injection (e.g., intravenous,
subcutaneous, intramuscular, etc.). In certain of such embodiments,
a pharmaceutical composition comprises a carrier and is formulated
in aqueous solution, such as water or physiologically compatible
buffers such as Hanks's solution, Ringer's solution, or
physiological saline buffer. In certain embodiments, other
ingredients are included (e.g., ingredients that aid in solubility
or serve as preservatives). In certain embodiments, injectable
suspensions are prepared using appropriate liquid carriers,
suspending agents and the like. Certain pharmaceutical compositions
for injection are presented in unit dosage form, e.g., in ampoules
or in multi-dose containers. Certain pharmaceutical compositions
for injection are suspensions, solutions or emulsions in oily or
aqueous vehicles, and may contain formulatory agents such as
suspending, stabilizing and/or dispersing agents. Certain solvents
suitable for use in pharmaceutical compositions for injection
include, but are not limited to, lipophilic solvents and fatty
oils, such as sesame oil, synthetic fatty acid esters, such as
ethyl oleate or triglycerides, and liposomes. Aqueous injection
suspensions may contain.
H. ADMINISTRATION
[0675] In certain embodiments, the compounds and compositions as
described herein are administered parenterally.
[0676] In certain embodiments, parenteral administration is by
infusion. Infusion can be chronic or continuous or short or
intermittent. In certain embodiments, infused pharmaceutical agents
are delivered with a pump. In certain embodiments, parenteral
administration is by injection.
[0677] In certain embodiments, compounds and compositions are
delivered to the CNS. In certain embodiments, compounds and
compositions are delivered to the cerebrospinal fluid. In certain
embodiments, compounds and compositions are administered to the
brain parenchyma. In certain embodiments, compounds and
compositions are delivered to an animal by intrathecal
administration, or intracerebroventricular administration. Broad
distribution of compounds and compositions, described herein,
within the central nervous system may be achieved with
intraparenchymal administration, intrathecal administration, or
intracerebroventricular administration.
[0678] In certain embodiments, parenteral administration is by
injection. The injection may be delivered with a syringe or a pump.
In certain embodiments, the injection is a bolus injection. In
certain embodiments, the injection is administered directly to a
tissue, such as striatum, caudate, cortex, hippocampus and
cerebellum.
[0679] Therefore, in certain embodiments, delivery of a compound or
composition described herein can affect the pharmacokinetic profile
of the compound or composition. In certain embodiments, injection
of a compound or composition described herein, to a targeted tissue
improves the pharmacokinetic profile of the compound or composition
as compared to infusion of the compound or composition. In a
certain embodiment, the injection of a compound or composition
improves potency compared to broad diffusion, requiring less of the
compound or composition to achieve similar pharmacology. In certain
embodiments, similar pharmacology refers to the amount of time that
a target mRNA and/or target protein is down-regulated (e.g.
duration of action). In certain embodiments, methods of
specifically localizing a pharmaceutical agent, such as by bolus
injection, decreases median effective concentration (EC50) by a
factor of about 50 (e.g. 50 fold less concentration in tissue is
required to achieve the same or similar pharmacodynamic effect). In
certain embodiments, methods of specifically localizing a
pharmaceutical agent, such as by bolus injection, decreases median
effective concentration (EC50) by a factor of 20, 25, 30, 35, 40,
45 or 50. In certain embodiments the pharmaceutical agent in an
antisense compound as further described herein. In certain
embodiments, the targeted tissue is brain tissue. In certain
embodiments the targeted tissue is striatal tissue. In certain
embodiments, decreasing EC50 is desirable because it reduces the
dose required to achieve a pharmacological result in a patient in
need thereof.
[0680] In certain embodiments, an antisense oligonucleotide is
delivered by injection or infusion once every month, every two
months, every 90 days, every 3 months, every 6 months, twice a year
or once a year.
I. CERTAIN COMBINATION THERAPIES
[0681] In certain embodiments, one or more pharmaceutical
compositions are co-administered with one or more other
pharmaceutical agents. In certain embodiments, such one or more
other pharmaceutical agents are designed to treat the same disease,
disorder, or condition as the one or more pharmaceutical
compositions described herein. In certain embodiments, such one or
more other pharmaceutical agents are designed to treat a different
disease, disorder, or condition as the one or more pharmaceutical
compositions described herein. In certain embodiments, such one or
more other pharmaceutical agents are designed to treat an undesired
side effect of one or more pharmaceutical compositions as described
herein. In certain embodiments, one or more pharmaceutical
compositions are co-administered with another pharmaceutical agent
to treat an undesired effect of that other pharmaceutical agent. In
certain embodiments, one or more pharmaceutical compositions are
co-administered with another pharmaceutical agent to produce a
combinational effect. In certain embodiments, one or more
pharmaceutical compositions are co-administered with another
pharmaceutical agent to produce a synergistic effect.
[0682] In certain embodiments, one or more pharmaceutical
compositions and one or more other pharmaceutical agents are
administered at the same time. In certain embodiments, one or more
pharmaceutical compositions and one or more other pharmaceutical
agents are administered at different times. In certain embodiments,
one or more pharmaceutical compositions and one or more other
pharmaceutical agents are prepared together in a single
formulation. In certain embodiments, one or more pharmaceutical
compositions and one or more other pharmaceutical agents are
prepared separately.
[0683] In certain embodiments, pharmaceutical agents that may be
co-administered with a pharmaceutical composition of include
antipsychotic agents, such as, e.g., haloperidol, chlorpromazine,
clozapine, quetiapine, and olanzapine; antidepressant agents, such
as, e.g., fluoxetine, sertraline hydrochloride, venlafaxine and
nortriptyline; tranquilizing agents such as, e.g., benzodiazepines,
clonazepam, paroxetine, venlafaxin, and beta-blockers;
mood-stabilizing agents such as, e.g., lithium, valproate,
lamotrigine, and carbamazepine; paralytic agents such as, e.g.,
Botulinum toxin; and/or other experimental agents including, but
not limited to, tetrabenazine (Xenazine), creatine, coenzyme Q10,
trehalose, docosahexanoic acids, ACR16, ethyl-EPA, atomoxetine,
citalopram, dimebon, memantine, sodium phenylbutyrate, ramelteon,
ursodiol, zyprexa, xenasine, tiapride, riluzole, amantadine,
[123I]MNI-420, atomoxetine, tetrabenazine, digoxin,
detromethorphan, warfarin, alprozam, ketoconazole, omeprazole, and
minocycline.
Nonlimiting Disclosure and Incorporation by Reference
[0684] While certain compounds, compositions and methods described
herein have been described with specificity in accordance with
certain embodiments, the following examples serve only to
illustrate the compounds described herein and are not intended to
limit the same. Each of the references, GenBank accession numbers,
and the like recited in the present application is incorporated
herein by reference in its entirety.
[0685] Although the sequence listing accompanying this filing
identifies each sequence as either "RNA" or "DNA" as required, in
reality, those sequences may be modified with any combination of
chemical modifications. One of skill in the art will readily
appreciate that such designation as "RNA" or "DNA" to describe
modified oligonucleotides is, in certain instances, arbitrary. For
example, an oligonucleotide comprising a nucleoside comprising a
2'-OH sugar moiety and a thymine base could be described as a DNA
having a modified sugar (2'-OH for the natural 2'-H of DNA) or as
an RNA having a modified base (thymine (methylated uracil) for
natural uracil of RNA).
[0686] Accordingly, nucleic acid sequences provided herein,
including, but not limited to those in the sequence listing, are
intended to encompass nucleic acids containing any combination of
natural or modified RNA and/or DNA, including, but not limited to
such nucleic acids having modified nucleobases. By way of further
example and without limitation, an oligomeric compound having the
nucleobase sequence "ATCGATCG" encompasses any oligomeric compounds
having such nucleobase sequence, whether modified or unmodified,
including, but not limited to, such compounds comprising RNA bases,
such as those having sequence "AUCGAUCG" and those having some DNA
bases and some RNA bases such as "AUCGATCG" and oligomeric
compounds having other modified or naturally occurring bases, such
as "AT.sup.meCGAUCG," wherein .sup.meC indicates a cytosine base
comprising a methyl group at the 5-position.
EXAMPLES
[0687] The following examples illustrate certain embodiments of the
present invention and are not limiting. Moreover, where specific
embodiments are provided, the inventors have contemplated generic
application of those specific embodiments. For example, disclosure
of an oligonucleotide having a particular motif provides reasonable
support for additional oligonucleotides having the same or similar
motif. And, for example, where a particular high-affinity
modification appears at a particular position, other high-affinity
modifications at the same position are considered suitable, unless
otherwise indicated.
[0688] To allow assessment of the relative effects of nucleobase
sequence and chemical modification, throughout the examples,
oligomeric compounds are assigned a "Sequence Code." Oligomeric
compounds having the same Sequence Code have the same nucleobase
sequence. Oligomeric compounds having different Sequence Codes have
different nucleobase sequences.
Example 1
Modified Antisense Oligonucleotides Targeting Human Target-X
[0689] Antisense oligonucleotides were designed targeting a
Target-X nucleic acid and were tested for their effects on Target-X
mRNA in vitro. ISIS 407939, which was described in an earlier
publication (WO 2009/061851) was also tested.
[0690] The newly designed chimeric antisense oligonucleotides and
their motifs are described in Table 15. The internucleoside
linkages throughout each gapmer are phosphorothioate linkages
(P.dbd.S). Nucleosides followed by "d" indicate
2'-deoxyribonucleosides. Nucleosides followed by "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g cEt) nucleosides.
Nucleosides followed by "e" indicate 2'-O-methoxyethyl (2'-MOE)
nucleosides. "N" indicates modified or naturally occurring
nucleobases (A, T, C, G, U, or 5-methyl C).
[0691] Each gapmer listed in Table 15 is targeted to the human
Target-X genomic sequence.
[0692] Activity of the newly designed gapmers was compared to a
5-10-5 2'-MOE gapmer, ISIS 407939 targeting human Target-X and is
further described in USPN XXX, incorporated herein by reference.
Cultured Hep3B cells at a density of 20,000 cells per well were
transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 was used to measure mRNA levels. Target-X mRNA levels were
adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells, and indicate that
several of the newly designed antisense oligonucleotides are more
potent than ISIS 407939. A total of 771 oligonucleotides were
tested. Only those oligonucleotides which were selected for further
studies are shown in Table 15. Each of the newly designed antisense
oligonucleotides provided in Table 1 achieved greater than 80%
inhibition and, therefore, are more active than ISIS 407939.
TABLE-US-00016 TABLE 15 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X Wing SEQ
ISIS % Gap Chemistry SEQ ID Sequence (5' to 3') NO inhibition Motif
Chemistry 5' 3' CODE NO NkNkNkNdNdNdNdNkNd 473359 92 3-10-3 Deoxy/
kkk eee 21 6 NdNdNdNdNeNeNe cEt NkNkNkNdNdNdNdNkNd 473360 96 3-10-3
Deoxy/ kkk eee 22 6 NdNdNdNdNeNeNe cEt NkNkNkNdNdNdNdNdNd 473168 94
3-10-3 Full kkk kkk 23 6 NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNdNd
473317 95 3-10-3 Full kkk eee 23 6 NdNdNdNdNeNeNe deoxy
NkNkNkNdNdNdNdNkNd 473471 90 3-10-3 Deoxy/ kkk eee 23 6
NdNdNdNdNeNeNe cEt NkNdNkNdNkNdNdNdNd 473620 94 5-9-2 Full kdkdk ee
23 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd 473019 88 2-10-2 Full
kk kk 24 7 NdNdNdNkNk deoxy NkNkNdNdNdNdNdNdNd 473020 93 2-10-2
Full kk kk 25 7 NdNdNdNkNk deoxy NkNkNkNdNdNdNdNdNd 473321 93
3-10-3 Full kkk eee 26 6 NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNdNd
473322 94 3-10-3 Full kkk eee 27 6 NdNdNdNdNeNeNe deoxy
NkNkNkNdNdNdNdNdNd 473323 96 3-10-3 Full kkk eee 28 6
NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNdNd 473326 94 3-10-3 Full kkk
eee 29 6 NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNkNd 473480 92 3-10-3
Deoxy/ kkk eee 29 6 NdNdNdNdNeNeNe cEt NkNkNkNdNdNdNdNdNd 473178 96
3-10-3 Full kkk kkk 30 6 NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNdNd
473327 96 3-10-3 Full kkk eee 30 6 NdNdNdNdNeNeNe deoxy
NkNkNkNdNdNdNdNkNd 473481 93 3-10-3 Deoxy/ kkk eee 30 6
NdNdNdNdNeNeNe cEt NkNdNkNdNkNdNdNdNd 473630 89 5-9-2 Full kdkdk ee
30 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd 473029 96 2-10-2 Full
kk kk 31 7 NdNdNdNkNk deoxy NkNkNdNdNdNdNdNdNd 472925 93 2-10-2
Full kk kk 32 7 NdNdNdNkNk deoxy NkNkNdNdNdNdNdNdNd 472926 85
2-10-2 Full kk kk 33 7 NdNdNdNkNk deoxy NkNkNkNdNdNdNdNdNd 473195
97 3-10-3 Full kkk kkk 34 6 NdNdNdNdNkNkNk deoxy NkNkNdNdNdNdNdNdNd
473046 90 2-10-2 Full kk kk 35 7 NdNdNdNkNk deoxy
NkNkNdNdNdNdNdNdNd 472935 92 2-10-2 Full kk kk 36 7 NdNdNdNkNk
deoxy NkNkNkNdNdNdNdNdNd 473089 95 3-10-3 Full kkk kkk 37 6
NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNdNd 473350 93 3-10-3 Full kkk
eee 38 6 NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNdNd 473353 93 3-10-3
Full kkk eee 39 6 NdNdNdNdNeNeNe deoxy NkNkNdNdNdNdNdNdNd 473055 91
2-10-2 Full kk kk 40 7 NdNdNdNkNk deoxy NkNkNkNdNdNdNdNkNd 473392
95 3-10-3 Deoxy/ kkk eee 41 6 NdNdNdNdNeNeNe cEt NkNkNkNdNdNdNdNdNd
473095 100 3-10-3 Full kkk kkk 42 6 NdNdNdNdNkNkNk deoxy
NkNkNkNdNdNdNdNdNd 473244 99 3-10-3 Full kkk eee 42 6
NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNkNd 473393 99 3-10-3 Deoxy/ kkk
eee 42 6 NdNdNdNdNeNeNe cEt NkNdNkNdNkNdNdNdNd 473547 98 5-9-2 Full
kdkdk ee 42 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd 472942 87
2-10-2 Full kk kk 43 7 NdNdNdNkNk deoxy NkNkNkNdNdNdNdNdNd 473098
97 3-10-3 Full kkk kkk 44 6 NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNkNd
473408 92 3-10-3 Deoxy/ kkk eee 45 6 NdNdNdNdNeNeNe cEt
NkNkNdNdNdNdNdNdNd 472958 89 2-10-2 Full kk kk 46 7 NdNdNdNkNk
deoxy NkNkNdNdNdNdNdNdNd 472959 90 2-10-2 Full kk kk 47 7
NdNdNdNkNk deoxy NkNdNkNdNkNdNdNdNd 473566 94 5-9-2 Full kdkdk ee
48 6 NdNdNdNdNdNeNe deoxy NkNdNkNdNkNdNdNdNd 473567 95 5-9-2 Full
kdkdk ee 49 6 NdNdNdNdNdNeNe deoxy NkNdNkNdNkNdNdNdNd 473569 92
5-9-2 Full kdkdk ee 50 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd
457851 90 2-10-2 Full kk kk 51 7 NdNdNdNkNk deoxy
NkNkNdNdNdNdNdNdNd 472970 91 2-10-2 Full kk kk 32 7 NdNdNdNkNk
deoxy NkNkNkNdNdNdNdNdNd 473125 90 3-10-3 Full kkk kkk 53 6
NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNdNd 473274 98 3-10-3 Full kkk
eee 53 6 NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNkNd 473428 90 3-10-3
Deoxy/ kkk eee 53 6 NdNdNdNdNeNeNe cEt NkNdNkNdNkNdNdNdNd 473577 93
5-9-2 Full kdkdk ee 53 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd
472976 97 2-10-2 Full kk kk 54 7 NdNdNdNkNk deoxy NkNkNdNdNdNdNdNd
472983 94 2-10-2 Full kk kk 55 7 NdNdNdNdNkNk deoxy
NkNkNdNdNdNdNdNd 472984 90 2-10-2 Full kk kk 56 7 NdNdNdNdNkNk
deoxy NkNkNkNdNdNdNdNd 473135 97 3-10-3 Full kkk kkk 57 6
NdNdNdNdNdNkNkNk deoxy NkNkNdNdNdNdNdNd 472986 95 2-10-2 Full kk kk
58 7 NdNdNdNdNkNk deoxy NkNkNkNdNdNdNdNd 473137 95 3-10-3 Full kkk
kkk 59 6 NdNdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNd 473286 95 3-10-3
Full kkk eee 59 6 NdNdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNkNd 473440
88 3-10-3 Deoxy/ kkk eee 59 6 NdNdNdNdNeNeNe cEt NkNdNkNdNkNdNdNd
473589 97 5-9-2 Full kdkdk ee 59 6 NdNdNdNdNdNdNeNe deoxy
NkNkNdNdNdNdNdNd 472988 85 2-10-2 Full kk kk 60 7 NdNdNdNdNkNk
deoxy NkNkNkNdNdNdNdNd 473140 96 3-10-3 Full kkk kkk 61 6
NdNdNdNdNdNkNkNk deoxy NkNkNdNdNdNdNdNd 472991 90 2-10-2 Full kk kk
62 7 NdNdNdNdNkNk deoxy NkNkNkNdNdNdNdNkNd 473444 94 3-10-3 Deoxy/
kkk eee 63 6 NdNdNdNdNeNeNe cEt NkNkNkNdNdNdNdNd 473142 96 3-10-3
Full kkk kkk 64 6 NdNdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNd 473291 95
3-10-3 Full kkk eee 64 6 NdNdNdNdNdNeNeNe deoxy NkNdNkNdNkNdNdNd
473594 95 5-9-2 Full kdkdk ee 64 6 NdNdNdNdNdNdNeNe deoxy
NkNkNkNdNdNdNdNdNd 473143 97 3-10-3 Full kkk kkk 65 6
NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNd 473292 96 3-10-3 Full kkk eee
65 6 NdNdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNkNd 473446 96 3-10-3
Deoxy/ kkk eee 65 6 NdNdNdNdNeNeNe cEt NkNdNkNdNkNdNdNdNd 473595 84
5-9-2 Full kdkdk ee 65 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd
472994 96 2-10-2 Full kk kk 66 7 NdNdNdNkNk deoxy
NkNkNkNdNdNdNdNdNd 473144 98 3-10-3 Full kkk kkk 67 6
NdNdNdNdNkNkNk deoxy NkNkNkNdNdNdNdNdNd 473293 96 3-10-3 Full kkk
eee 67 6 NdNdNdNdNeNeNe deoxy NkNkNdNdNdNdNdNdNd 472995 96 2-10-2
Full kk kk 68 7 NdNdNdNkNk deoxy NkNkNkNdNdNdNdNd 473294 91 3-10-3
Full kkk eee 69 6 NdNdNdNdNdNeNeNe deoxy NkNdNkNdNkNdNdNdNd 473597
94 5-9-2 Full kdkdk ee 69 6 NdNdNdNdNdNeNe deoxy NkNkNdNdNdNdNdNdNd
472996 94 2-10-2 Full kk kk 70 7 NdNdNdNkNk deoxy NkNkNkNdNdNdNdNd
473295 92 3-10-3 Full kkk eee 71 6 NdNdNdNdNdNeNeNe deoxy
NeNeNeNeNeNdNdNdNdNd 407939 80 5-10-5 Full eeeee eeee 72 8
NdNdNdNdNdNeNeNeNeNe deoxy e NkNkNkNdNdNdNdNdNd 473296 98 3-10-3
Full kkk eee 73 6 NdNdNdNdNeNeNe deoxy NkNkNkNdNdNdNdNkNd 473450 95
3-10-3 Deoxy/ kkk eee 73 6 NdNdNdNdNeNeNe cEt NkNkNdNdNdNdNdNdNd
472998 97 2-10-2 Full kk kk 74 7 NdNdNdNkNk deoxy e = 2'MOE, k =
cEt, d = 2'-deoxyribonucleoside
Example 2
Modified Antisense Oligonucleotides Comprising 6'-(S)--CH.sub.3
Bicyclic Nucleoside (cEt) and F-HNA Modifications Targeting Human
Target-X
[0693] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. ISIS 407939 was also tested.
[0694] The chimeric antisense oligonucleotides and their motifs are
described in Table 16. The internucleoside linkages throughout each
gapmer are phosphorothioate linkages (P.dbd.S). Nucleosides
followed by "d" indicate 2'-deoxyribonucleosides. Nucleosides
followed by "k" indicate 6'-(S)--CH.sub.3 bicyclic nucleosides (e.g
cEt). Nucleosides followed by "e" indicate 2'-O-methoxyethyl
(2'-MOE) modified nucleosides. Nucleosides followed by `g` indicate
F-HNA modified nucleosides. "N" indicates modified or naturally
occurring nucleobases (A, T, C, G, U, or 5-methyl C).
[0695] Each gapmer listed in Table 16 is targeted to the human
Target-X genomic sequence.
[0696] Activity of the newly designed gapmers was compared to a
5-10-5 2'-MOE gapmer, ISIS 407939 targeting human Target-X.
Cultured Hep3B cells at a density of 20,000 cells per well were
transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 was used to measure mRNA levels. Target-X mRNA levels were
adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells, and demonstrate that
several of the newly designed gapmers are more potent than ISIS
407939. A total of 765 oligonucleotides were tested. Only those
oligonucleotides which were selected for further studies are shown
in Table 16. All but one of the newly designed antisense
oligonucleotides provided in Table 16 achieved greater than 30%
inhibition and, therefore, are more active than ISIS 407939.
TABLE-US-00017 TABLE 16 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X Wing SEQ
ISIS % Gap Chemistry SEQ ID Sequence (5' to 3') No inhibition Motif
Chemistry 5' 3' CODE NO NgNgNdNdNdNdNdNdNd 482838 81 2-10-2 Full gg
gg 25 7 NdNdNdNgNg deoxy NgNgNgNdNdNdNdNdNd 482992 93 3-10-3 Full
ggg ggg 28 6 NdNdNdNdNgNgNg deoxy NgNgNgNdNdNdNdNdNd 482996 97
3-10-3 Full ggg ggg 30 6 NdNdNdNdNgNgNg deoxy NgNdNgNdNgNdNdNdNd
483284 82 5-9-2 Full gdgdg ee 23 6 NdNdNdNdNdNeNe deoxy
NgNdNgNdNgNdNdNdNd 483289 70 5-9-2 Full gdgdg ee 27 6
NdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNdNd 483290 80 5-9-2 Full gdgdg
ee 28 6 NdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNdNd 483294 69 5-9-2
Full gdgdg ee 30 6 NdNdNdNdNdNeNe deoxy NgNgNdNdNdNdNdNdNd 483438
81 2-10-4 Full gg eeee 23 6 NdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNdNd
483444 84 2-10-4 Full gg eeee 28 6 NdNdNdNeNeNeNe deoxy
NgNgNdNdNdNdNdNdNd 483448 77 2-10-4 Full gg eeee 30 6
NdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNdNd 482847 79 2-10-2 Full gg gg
31 7 NdNdNdNgNg deoxy NgNgNdNdNdNdNdNdNd 482747 85 2-10-2 Full gg
gg 32 7 NdNdNdNgNg deoxy NgNgNdNdNdNdNdNdNd 482873 81 2-10-2 Full
gg gg 40 7 NdNdNdNgNg deoxy NgNgNdNdNdNdNdNdNdNd 482874 82 2-10-2
Full gg gg 75 7 NdNdNgNg deoxy NgNgNdNdNdNdNdNd 482875 82 2-10-2
Full gg gg 76 7 NdNdNdNdNgNg deoxy NgNgNgNdNdNdNdNd 482896 95
3-10-3 Full ggg ggg 77 6 NdNdNdNdNdNgNgNg deoxy NgNgNgNdNdNdNdNdNd
483019 89 3-10-3 Full ggg ggg 38 6 NdNdNdNdNgNgNg deoxy
NgNdNgNdNdNdNdNdNd 483045 92 3-10-3 Full gdg gdg 77 6
NdNdNdNdNgNdNg deoxy NgNdNgNdNgNdNdNdNd 483194 64 3-10-3 Full gdg
gdg 77 6 NdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNdNd 483317 79 5-9-2
Full gdgdg ee 38 6 NdNdNdNdNdNeNe deoxy NgNgNdNdNdNdNdNdNd 483343
75 2-10-4 Full gg eeee 57 6 NdNdNdNeNeNeNe deoxy
NgNgNdNdNdNdNdNdNdNdN 483471 76 2-10-4 Full gg eeee 38 6
dNdNeNeNeNe deoxy NgNgNdNdNdNdNdNdNd 483478 20 2-10-4 Full gg eeee
78 6 NdNdNdNeNeNeNe deoxy NeNeNeNeNeNdNdNdNdNd 407939 30 5-10-5
Full eeeee eeeee 72 8 NdNdNdNdNdNeNeNeNeNe deoxy NgNgNdNdNdNdNdNd
482784 83 2-10-2 Full gg gg 79 7 NdNdNdNdNgNg deoxy
NgNgNdNdNdNdNdNd 482794 91 2-10-2 Full gg gg 54 7 NdNdNdNdNgNg
deoxy NgNgNdNdNdNdNdNd 482804 80 2-10-2 Full gg gg 58 7
NdNdNdNdNgNg deoxy NgNgNdNdNdNdNdNd 482812 81 2-10-2 Full gg gg 66
7 NdNdNdNdNgNg deoxy NgNgNdNdNdNdNdNd 482813 92 2-10-2 Full gg gg
68 7 NdNdNdNdNgNg deoxy NgNgNdNdNdNdNdNd 482814 94 2-10-2 Full gg
gg 70 7 NdNdNdNdNgNg deoxy NgNgNdNdNdNdNdNd 482815 81 2-10-2 Full
gg gg 80 7 NdNdNdNdNgNg deoxy NgNgNdNdNdNdNdNd 482816 71 2-10-2
Full gg gg 74 7 NdNdNdNdNgNg deoxy NgNgNgNdNdNdNdNd 482916 90
3-10-3 Full ggg ggg 44 6 NdNdNdNdNdNgNgNg deoxy NgNgNgNdNdNdNdNd
482932 89 3-10-3 Full ggg ggg 48 6 NdNdNdNdNdNgNgNg deoxy
NgNgNgNdNdNdNdNd 482953 93 3-10-3 Full ggg ggg 57 6
NdNdNdNdNdNgNgNg deoxy NgNgNgNdNdNdNdNd 482962 97 3-10-3 Full ggg
ggg 67 6 NdNdNdNdNdNgNgNg deoxy NgNgNgNdNdNdNdNd 482963 96 3-10-3
Full ggg ggg 69 6 NdNdNdNdNdNgNgNg deoxy NgNgNgNdNdNdNdNd 482965 89
3-10-3 Full ggg ggg 73 6 NdNdNdNdNdNgNgNg deoxy NgNdNgNdNdNdNdNd
483065 69 3-10-3 Full ggg ggg 44 6 NdNdNdNdNdNgNdNg deoxy
NgNdNgNdNdNdNdNd 483092 89 3-10-3 Full gdg gdg 53 6
NdNdNdNdNdNgNdNg deoxy NgNdNgNdNgNdNdNd 483241 79 5-9-2 Full gdgdg
ee 53 6 NdNdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNd 483253 76 5-9-2
Full gdgdg ee 59 6 NdNdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNd 483258
70 5-9-2 Full gdgdg ee 64 6 NdNdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNd
483260 62 5-9-2 Full gdgdg ee 67 6 NdNdNdNdNdNdNeNe deoxy
NgNdNgNdNgNdNdNd 483261 76 5-9-2 Full gdgdg ee 69 6
NdNdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNd 483262 75 5-9-2 Full gdgdg
ee 71 6 NdNdNdNdNdNdNeNe deoxy NgNdNgNdNgNdNdNd 483263 73 5-9-2
Full gdgdg ee 73 6 NdNdNdNdNdNdNeNe deoxy NgNgNdNdNdNdNdNd 483364
78 2-10-4 Full gg eeee 81 6 NdNdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNd
483395 86 2-10-4 Full gg eeee 53 6 NdNdNdNdNeNeNeNe deoxy
NgNgNdNdNdNdNdNd 483413 83 2-10-4 Full gg eeee 65 6
NdNdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNd 483414 76 2-10-4 Full gg
eeee 67 6 NdNdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNd 483415 85 2-10-4
Full gg eeee 69 6 NdNdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNd 483416 77
2-10-4 Full gg eeee 71 6 NdNdNdNdNeNeNeNe deoxy NgNgNdNdNdNdNdNd
483417 83 2-10-4 Full gg eeee 73 6 NdNdNdNdNeNeNeNe deoxy e =
2'-MOE, d = 2'-deoxyribonucleoside, g = F-HNA
Example 3
Modified Antisense Oligonucleotides Comprising 2'-MOE and
6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt) Modifications
Targeting Human Target-X
[0697] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. ISIS 403052, ISIS 407594, ISIS 407606,
ISIS 407939, and ISIS 416438, which were described in an earlier
publication (WO 2009/061851) were also tested.
[0698] The newly designed chimeric antisense oligonucleotides are
16 nucleotides in length and their motifs are described in Table
17. The chemistry column of Table 17 presents the sugar motif of
each oligonucleotide, wherein "e" indicates a 2'-O-methoxyethyl
(2'-MOE) nucleoside, "k" indicates a 6'-(S)--CH.sub.3 bicyclic
nucleoside (e.g cEt) and "d" indicates a 2'-deoxyribonucleoside.
The internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine residues
throughout each oligonucleotide are 5-methylcytosines.
[0699] Each gapmer listed in Table 17 is targeted to the human
Target-X genomic sequence.
[0700] Activity of the newly designed gapmers was compared to ISIS
403052, ISIS 407594, ISIS 407606, ISIS 407939, and ISIS 416438.
Cultured Hep3B cells at a density of 20,000 cells per well were
transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 (described hereinabove in Example 1) was used to measure
mRNA levels. Target-X mRNA levels were adjusted according to total
RNA content, as measured by RIBOGREEN. Results are presented as
percent inhibition of Target-X, relative to untreated control
cells. A total of 380 oligonucleotides were tested. Only those
oligonucleotides which were selected for further studies are shown
in Table 17. Each of the newly designed antisense oligonucleotides
provided in Table 17 achieved greater than 64% inhibition and,
therefore, are more potent than each of ISIS 403052, ISIS 407594,
ISIS 407606, ISIS 407939, and ISIS 416438.
TABLE-US-00018 TABLE 17 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No
Chemistry Motif % inhibition SEQ CODE 403052 eeeee-(d10)-eeeee
5-10-5 64 82 407594 eeeee-(d10)-eeeee 5-10-5 40 83 407606
eeeee-(d10)-eeeee 5-10-5 39 84 407939 eeeee-(d10)-eeeee 5-10-5 57
72 416438 eeeee-(d10)-eeeee 5-10-5 62 85 484487 kdk-(d10)-dkdk
3-10-3 91 77 484539 kdk-d(10)-kdk 3-10-3 92 53 484546 kdk-d(10)-kdk
3-10-3 92 86 484547 kdk-d(10)-kdk 3-10-3 89 87 484549 kdk-d(10)-kdk
3-10-3 91 57 484557 kdk-d(10)-kdk 3-10-3 92 65 484558 kdk-d(10)-kdk
3-10-3 94 67 484559 kdk-d(10)-kdk 3-10-3 90 69 484582 kdk-d(10)-kdk
3-10-3 88 23 484632 kk-d(10)-eeee 2-10-4 90 88 484641 kk-d(10)-eeee
2-10-4 91 77 484679 kk-d(10)-eeee 2-10-4 90 49 484693 kk-d(10)-eeee
2-10-4 93 53 484711 kk-d(10)-eeee 2-10-4 92 65 484712 kk-d(10)-eeee
2-10-4 92 67 484713 kk-d(10)-eeee 2-10-4 85 69 484714 kk-d(10)-eeee
2-10-4 83 71 484715 kk-d(10)-eeee 2-10-4 93 73 484736 kk-d(10)-eeee
2-10-4 89 23 484742 kk-d(10)-eeee 2-10-4 93 28 484746 kk-d(10)-eeee
2-10-4 88 30 484771 kk-d(10)-eeee 2-10-4 89 89 e = 2'-MOE, k = cEt,
d = 2'-deoxyribonucleoside
Example 4
Antisense Inhibition of Human Target-X with 5-10-5 2'-MOE
Gapmers
[0701] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. Also tested were ISIS 403094, ISIS
407641, ISIS 407643, ISIS 407662, ISIS 407900, ISIS 407910, ISIS
407935, ISIS 407936, ISIS 407939, ISIS 416446, ISIS 416449, ISIS
416455, ISIS 416472, ISIS 416477, ISIS 416507, ISIS 416508, ISIS
422086, ISIS 422087, ISIS 422140, and ISIS 422142, 5-10-5 2'-MOE
gapmers targeting human Target-X, which were described in an
earlier publication (WO 2009/061851), incorporated herein by
reference.
[0702] The newly designed modified antisense oligonucleotides are
20 nucleotides in length and their motifs are described in Tables
18 and 19. The chemistry column of Tables 18 and 19 present the
sugar motif of each oligonucleotide, wherein "e" indicates a
2'-O-methoxyethyl (2'-MOE) nucleoside and "d" indicates a
2'-deoxyribonucleoside. The internucleoside linkages throughout
each gapmer are phosphorothioate (P.dbd.S) linkages. All cytosine
residues throughout each oligonucleotide are 5-methylcytosines.
[0703] Each gapmer listed in Table 18 is targeted to the human
Target-X genomic sequence.
[0704] Activity of the newly designed gapmers was compared to ISIS
403094, ISIS 407641, ISIS 407643, ISIS 407662, ISIS 407900, ISIS
407910, ISIS 407935, ISIS 407936, ISIS 407939, ISIS 416446, ISIS
416449, ISIS 416455, ISIS 416472, ISIS 416477, ISIS 416507, ISIS
416508, ISIS 422086, ISIS 422087, ISIS 422140, and ISIS 422142.
Cultured Hep3B cells at a density of 20,000 cells per well were
transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 (described hereinabove in Example 1) was used to measure
mRNA levels. Target-X mRNA levels were adjusted according to total
RNA content, as measured by RIBOGREEN. Results are presented as
percent inhibition of Target-X, relative to untreated control
cells. A total of 916 oligonucleotides were tested. Only those
oligonucleotides which were selected for further studies are shown
in Tables 18 and 19.
TABLE-US-00019 TABLE 18 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No
Chemistry % inhibition SEQ CODE 490275 e5-d(10)-e5 35 90 490277
e5-d(10)-e5 73 91 490278 e5-d(10)-e5 78 92 490279 e5-d(10)-e5 66 93
490323 e5-d(10)-e5 65 94 490368 e5-d(10)-e5 78 95 490396
e5-d(10)-e5 76 96 416507 e5-d(10)-e5 73 97 422140 e5-d(10)-e5 59 98
422142 e5-d(10)-e5 73 99 416508 e5-d(10)-e5 75 100 490424
e5-d(10)-e5 57 101 490803 e5-d(10)-e5 70 102 416446 e5-d(10)-e5 73
103 416449 e5-d(10)-e5 33 104 407900 e5-d(10)-e5 66 105 490103
e5-d(10)-e5 87 106 416455 e5-d(10)-e5 42 107 407910 e5-d(10)-e5 25
108 490149 e5-d(10)-e5 82 109 403094 e5-d(10)-e5 60 110 416472
e5-d(10)-e5 78 111 407641 e5-d(10)-e5 64 112 416477 e5-d(10)-e5 25
113 407643 e5-d(10)-e5 78 114 490196 e5-d(10)-e5 81 115 490197
e5-d(10)-e5 85 116 490208 e5-d(10)-e5 89 117 490209 e5-d(10)-e5 81
118 422086 e5-d(10)-e5 90 119 407935 e5-d(10)-e5 91 120 422087
e5-d(10)-e5 89 121 407936 e5-d(10)-e5 80 122 407939 e5-d(10)-e5 67
72 e = 2'-MOE, d = 2'-deoxynucleoside
TABLE-US-00020 TABLE 19 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides ISIS No Motif % inhibition SEQ
CODE 407662 e5-d(10)-e5 76 123 416446 e5-d(10)-e5 73 103 e =
2'-MOE, d = 2'-deoxynucleoside
Example 5
Modified Chimeric Antisense Oligonucleotides Comprising
6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt) Modifications at 5'
and 3' Wing Regions Targeting Human Target-X
[0705] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. ISIS 407939, which was described in an
earlier publication (WO 2009/061851) were also tested. ISIS 457851,
ISIS 472925, ISIS 472926, ISIS 472935, ISIS 472942, ISIS 472958,
ISIS 472959, ISIS 472970, ISIS 472976, ISIS 472983, ISIS 472984,
ISIS 472988, ISIS 472991, ISIS 472994, ISIS 472995, ISIS 472996,
ISIS 472998, and ISIS 473020, described in the Examples above were
also included in the screen.
[0706] The newly designed chimeric antisense oligonucleotides in
Table 20 were designed as 2-10-2 cEt gapmers. The newly designed
gapmers are 14 nucleosides in length, wherein the central gap
segment comprises of ten 2'-deoxyribonucleosides and is flanked by
wing segments on the 5' direction and the 3' direction comprising
five nucleosides each. Each nucleoside in the 5' wing segment and
each nucleoside in the 3' wing segment comprises 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g cEt) modification. The internucleoside
linkages throughout each gapmer are phosphorothioate (P.dbd.S)
linkages. All cytosine residues throughout each gapmer are
5-methylcytosines.
[0707] Each gapmer listed in Table 20 is targeted to the human
Target-X genomic sequence.
[0708] Activity of the newly designed oligonucleotides was compared
to ISIS 407939. Cultured Hep3B cells at a density of 20,000 cells
per well were transfected using electroporation with 2,000 nM
antisense oligonucleotide. After a treatment period of
approximately 24 hours, RNA was isolated from the cells and
Target-X mRNA levels were measured by quantitative real-time PCR.
Human primer probe set RTS2927 (described hereinabove in Example 1)
was used to measure mRNA levels. Target-X mRNA levels were adjusted
according to total RNA content, as measured by RIBOGREEN. Results
are presented as percent inhibition of Target-X, relative to
untreated control cells. A total of 614 oligonucleotides were
tested. Only those oligonucleotides which were selected for further
studies are shown in Table 20. Many of the newly designed antisense
oligonucleotides provided in Table 20 achieved greater than 72%
inhibition and, therefore, are more potent than ISIS 407939.
TABLE-US-00021 TABLE 20 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No %
inhibition Motif Wing Chemistry SEQ CODE 407939 72 5-10-5 cEt 72
473020 90 2-10-2 cEt 25 492465 83 2-10-2 cEt 124 492467 74 2-10-2
cEt 125 492492 84 2-10-2 cEt 126 492494 91 2-10-2 cEt 127 492503 89
2-10-2 cEt 128 492530 91 2-10-2 cEt 129 492534 91 2-10-2 cEt 130
492536 90 2-10-2 cEt 131 492541 84 2-10-2 cEt 132 492545 89 2-10-2
cEt 133 492566 90 2-10-2 cEt 134 492571 82 2-10-2 cEt 135 492572 89
2-10-2 cEt 136 492573 90 2-10-2 cEt 137 492574 92 2-10-2 cEt 138
492575 88 2-10-2 cEt 139 492593 83 2-10-2 cEt 140 492617 91 2-10-2
cEt 141 492618 92 2-10-2 cEt 142 492619 90 2-10-2 cEt 143 492621 75
2-10-2 cEt 144 492104 89 2-10-2 cEt 145 492105 86 2-10-2 cEt 146
492189 88 2-10-2 cEt 147 492194 92 2-10-2 cEt 148 492195 90 2-10-2
cEt 149 472925 87 2-10-2 cEt 32 492196 91 2-10-2 cEt 150 472926 88
2-10-2 cEt 33 492205 92 2-10-2 cEt 151 492215 77 2-10-2 cEt 152
492221 79 2-10-2 cEt 153 472935 82 2-10-2 cEt 36 492234 86 2-10-2
cEt 154 472942 85 2-10-2 cEt 43 492276 75 2-10-2 cEt 155 492277 75
2-10-2 cEt 156 492306 85 2-10-2 cEt 157 492317 93 2-10-2 cEt 158
472958 92 2-10-2 cEt 46 472959 88 2-10-2 cEt 47 492329 88 2-10-2
cEt 159 492331 95 2-10-2 cEt 160 492333 85 2-10-2 cEt 161 492334 88
2-10-2 cEt 162 457851 89 2-10-2 cEt 51 472970 92 2-10-2 cEt 52
492365 69 2-10-2 cEt 163 472976 94 2-10-2 cEt 54 472983 76 2-10-2
cEt 55 472984 72 2-10-2 cEt 56 492377 70 2-10-2 cEt 164 492380 80
2-10-2 cEt 165 492384 61 2-10-2 cEt 166 472988 59 2-10-2 cEt 60
492388 70 2-10-2 cEt 167 492389 70 2-10-2 cEt 168 492390 89 2-10-2
cEt 169 492391 80 2-10-2 cEt 170 472991 84 2-10-2 cEt 62 492398 88
2-10-2 cEt 171 492399 94 2-10-2 cEt 172 492401 91 2-10-2 cEt 173
492403 78 2-10-2 cEt 174 472994 95 2-10-2 cEt 66 472995 91 2-10-2
cEt 68 492404 84 2-10-2 cEt 175 492405 87 2-10-2 cEt 176 472996 85
2-10-2 cEt 70 492406 43 2-10-2 cEt 177 472998 92 2-10-2 cEt 74
492440 89 2-10-2 cEt 178
Example 6
Modified Chimeric Antisense Oligonucleotides Comprising
6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt) Modifications at 5'
and 3' Wing Regions Targeting Human Target-X
[0709] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. Also tested was ISIS 407939, a 5-10-5
MOE gapmer targeting human Target-X, which was described in an
earlier publication (WO 2009/061851). ISIS 472998 and ISIS 473046,
described in the Examples above were also included in the
screen.
[0710] The newly designed chimeric antisense oligonucleotides in
Table 21 were designed as 2-10-2 cEt gapmers. The newly designed
gapmers are 14 nucleosides in length, wherein the central gap
segment comprises of ten 2'-deoxyribonucleosides and is flanked by
wing segments on the 5' direction and the 3' direction comprising
five nucleosides each. Each nucleoside in the 5' wing segment and
each nucleoside in the 3' wing segment comprise 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g cEt) modification. The internucleoside
linkages throughout each gapmer are phosphorothioate (P.dbd.S)
linkages. All cytosine residues throughout each gapmer are
5-methylcytosines.
[0711] Each gapmer listed in Table 21 is targeted to the human
Target-X genomic sequence.
[0712] Activity of the newly designed gapmers was compared to ISIS
407939. Cultured Hep3B cells at a density of 20,000 cells per well
were transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 (described hereinabove in Example 1) was used to measure
mRNA levels. Target-X mRNA levels were adjusted according to total
RNA content, as measured by RIBOGREEN. Results are presented as
percent inhibition of Target-X, relative to untreated control
cells. A total of 757 oligonucleotides were tested. Only those
oligonucleotides which were selected for further studies are shown
in Table 21. Each of the newly designed antisense oligonucleotides
provided in Table 21 achieved greater than 67% inhibition and,
therefore, are more potent than 407939.
TABLE-US-00022 TABLE 21 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No %
inhibition Motif Wing chemistry SEQ CODE 407939 67 5-10-5 cEt 72
492651 77 2-10-2 cEt 179 492652 84 2-10-2 cEt 180 492658 87 2-10-2
cEt 181 492725 74 2-10-2 cEt 182 492730 78 2-10-2 cEt 183 492731 72
2-10-2 cEt 184 492784 72 2-10-2 cEt 185 492816 70 2-10-2 cEt 186
492818 73 2-10-2 cEt 187 492877 83 2-10-2 cEt 188 492878 79 2-10-2
cEt 189 492913 73 2-10-2 cEt 190 492914 82 2-10-2 cEt 191 492928 76
5-10-5 cEt 192 492938 80 2-10-2 cEt 193 492991 91 2-10-2 cEt 194
492992 73 2-10-2 cEt 195 493087 81 2-10-2 cEt 196 493114 80 2-10-2
cEt 197 493178 86 2-10-2 cEt 198 493179 69 2-10-2 cEt 199 493182 79
2-10-2 cEt 200 493195 71 2-10-2 cEt 201 473046 79 2-10-2 cEt 35
493201 86 2-10-2 cEt 202 493202 76 2-10-2 cEt 203 493255 80 2-10-2
cEt 204 493291 84 2-10-2 cEt 205 493292 90 2-10-2 cEt 206 493296 82
2-10-2 cEt 207 493298 77 2-10-2 cEt 208 493299 76 5-10-5 cEt 209
493304 77 2-10-2 cEt 210 493312 75 2-10-2 cEt 211 493333 76 2-10-2
cEt 212 472998 85 2-10-2 cEt 74
Example 7
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0713] Antisense oligonucleotides from the studies above,
exhibiting in vitro inhibition of Target-X mRNA, were selected and
tested at various doses in Hep3B cells. Cells were plated at a
density of 20,000 cells per well and transfected using
electroporation with 0.67 .mu.M, 2.00 .mu.M, 1.11 .mu.M, and 6.00
.mu.M concentrations of antisense oligonucleotide, as specified in
Table 22. After a treatment period of approximately 16 hours, RNA
was isolated from the cells and Target-X mRNA levels were measured
by quantitative real-time PCR. Human Target-X primer probe set
RTS2927 was used to measure mRNA levels. Target-X mRNA levels were
adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells.
[0714] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is also presented in Table 22. As illustrated
in Table 22, Target-X mRNA levels were reduced in a dose-dependent
manner in antisense oligonucleotide treated cells. The data also
confirms that several of the newly designed gapmers are more potent
than ISIS 407939 of the previous publication.
TABLE-US-00023 TABLE 22 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 666.6667 2000.0
6000.0 IC.sub.50 ISIS No nM nM nM (.mu.M) 407939 47 68 85 0.7
457851 60 80 93 <0.6 472916 53 80 87 <0.6 472925 62 86 95
<0.6 472926 66 77 85 <0.6 472935 54 84 94 <0.6 472958 66
82 88 <0.6 472959 64 81 93 <0.6 472970 72 87 86 <0.6
472976 78 92 97 <0.6 472994 79 92 96 <0.6 472995 61 82 93
<0.6 472996 73 91 95 <0.6 472998 63 90 95 <0.6 473019 55
80 86 <0.6 473020 61 76 85 <0.6 473046 61 80 94 <0.6
473055 55 84 94 <0.6 492104 53 76 88 <0.6 492105 62 80 90
<0.6 492189 57 80 92 <0.6 492194 57 83 91 <0.6 492195 58
81 95 <0.6 492196 62 86 95 <0.6 492205 62 87 95 <0.6
492215 60 78 89 <0.6 492221 63 76 92 <0.6 492234 51 74 91 0.5
492276 50 56 95 0.8 492277 58 73 81 <0.6 492306 61 75 84 <0.6
492317 59 80 93 <0.6 492329 59 70 89 <0.6 492331 69 87 95
<0.6 492333 47 70 85 0.7 492334 57 77 90 <0.6 492390 72 88 95
<0.6 492399 68 91 96 <0.6 492401 68 89 95 <0.6 492404 65
87 94 <0.6 492405 44 81 90 0.7 492406 65 82 92 <0.6 492440 50
70 89 0.6 492465 16 80 79 1.4 492467 58 77 92 <0.6 492492 45 80
94 0.7 492494 63 82 93 <0.6 492503 55 81 93 <0.6 492530 70 86
90 <0.6 492534 67 85 91 <0.6 492536 54 81 89 <0.6 492541
54 71 85 <0.6 492545 59 78 89 <0.6 492566 59 84 85 <0.6
492571 52 81 89 <0.6 492572 67 83 90 <0.6 492573 69 83 92
<0.6 492574 65 82 91 <0.6 492575 72 83 91 <0.6 492593 61
78 90 <0.6 492617 62 80 93 <0.6 492618 47 79 94 0.6 492619 54
82 95 <0.6 492621 44 85 92 0.6 492651 53 66 91 0.6 492652 61 78
88 <0.6 492658 59 79 88 <0.6 492725 43 84 89 0.6 492730 51 87
93 0.4 492731 46 82 90 0.6 492784 56 88 96 <0.6 492816 68 89 97
<0.6 492818 64 84 96 <0.6 492877 67 91 93 <0.6 492878 80
89 93 <0.6 492913 53 87 92 <0.6 492914 75 89 96 <0.6
492928 60 83 94 <0.6 492938 70 90 92 <0.6 492991 67 93 99
<0.6 492992 0 82 95 2.1 493087 54 81 90 <0.6 493114 50 73 90
0.6 493178 71 88 96 <0.6 493179 47 82 95 0.6 493182 79 87 91
<0.6 493195 55 78 90 <0.6 493201 87 93 96 <0.6 493202 68
89 94 <0.6 493255 57 79 93 <0.6 493291 57 87 93 <0.6
493292 70 89 93 <0.6 493296 35 84 91 0.9 493298 57 84 92 <0.6
493299 65 84 93 <0.6 493304 68 86 94 <0.6 493312 53 82 91
<0.6 493333 66 84 87 <0.6
Example 8
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0715] Additional antisense oligonucleotides from the studies
described above, exhibiting in vitro inhibition of Target-X mRNA,
were selected and tested at various doses in Hep3B cells. Cells
were plated at a density of 20,000 cells per well and transfected
using electroporation with 0.67 .mu.M, 2.00 .mu.M, 1.11 .mu.M, and
6.00 .mu.M concentrations of antisense oligonucleotide, as
specified in Table 23. After a treatment period of approximately 16
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human Target-X primer
probe set RTS2927 was used to measure mRNA levels. Target-X mRNA
levels were adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells. As illustrated in
Table 23, Target-X mRNA levels were reduced in a dose-dependent
manner in antisense oligonucleotide treated cells. The data also
confirms that several of the newly designed gapmers are more potent
than ISIS 407939.
TABLE-US-00024 TABLE 23 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 0.67 2.00 6.00
IC.sub.50 ISIS No .mu.M .mu.M .mu.M (.mu.M) 407939 52 71 86 0.6
472983 49 83 97 0.5 472984 51 82 95 0.5 472991 49 82 95 0.5 472998
59 88 96 <0.6 492365 74 91 96 <0.6 492377 56 76 91 <0.6
492380 63 79 95 <0.6 492384 67 84 94 <0.6 492388 69 87 97
<0.6 492389 62 90 96 <0.6 492391 56 84 94 <0.6 492398 63
80 95 <0.6 492403 58 81 91 <0.6
Example 9
Modified Chimeric Antisense Oligonucleotides Comprising
2'-Methoxyethyl (2'-MOE) Modifications at 5' and 3' Wing Regions
Targeting Human Target-X
[0716] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. Also tested were ISIS 403052, ISIS
407939, ISIS 416446, ISIS 416472, ISIS 416507, ISIS 416508, ISIS
422087, ISIS 422096, ISIS 422130, and ISIS 422142 which were
described in an earlier publication (WO 2009/061851), incorporated
herein by reference. ISIS 490149, ISIS 490197, ISIS 490209, ISIS
490275, ISIS 490277, and ISIS 490424, described in the Examples
above, were also included in the screen.
[0717] The newly designed chimeric antisense oligonucleotides in
Table 24 were designed as 3-10-4 2'-MOE gapmers. These gapmers are
17 nucleosides in length, wherein the central gap segment comprises
of ten 2'-deoxyribonucleosides and is flanked by wing segments on
the 5' direction with three nucleosides and the 3' direction with
four nucleosides. Each nucleoside in the 5' wing segment and each
nucleoside in the 3' wing segment has 2'-MOE modifications. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine residues
throughout each gapmer are 5-methylcytosines.
[0718] Each gapmer listed in Table 24 is targeted to the human
Target-X genomic sequence.
[0719] Activity of the newly designed oligonucleotides was compared
to ISIS 403052, ISIS 407939, ISIS 416446, ISIS 416472, ISIS 416507,
ISIS 416508, ISIS 422087, ISIS 422096, ISIS 422130, and ISIS
422142. Cultured Hep3B cells at a density of 20,000 cells per well
were transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 (described hereinabove in Example 1) was used to measure
mRNA levels. Target-X mRNA levels were adjusted according to total
RNA content, as measured by RIBOGREEN.RTM.. Results are presented
as percent inhibition of Target-X, relative to untreated control
cells. A total of 272 oligonucleotides were tested. Only those
oligonucleotides which were selected for further studies are shown
in Table 24. Several of the newly designed antisense
oligonucleotides provided in Table 24 are more potent than
antisense oligonucleotides from the previous publication.
TABLE-US-00025 TABLE 24 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No %
inhibition Motif Wing Chemistry SEQ CODE 403052 51 5-10-5 2'-MOE 82
407939 78 5-10-5 2'-MOE 72 416446 70 5-10-5 2'-MOE 103 416472 79
5-10-5 2'-MOE 111 416507 84 5-10-5 2'-MOE 97 416508 80 5-10-5
2'-MOE 100 422087 89 5-10-5 2'-MOE 121 422096 78 5-10-5 2'-MOE 219
422130 81 5-10-5 2'-MOE 225 422142 84 5-10-5 2'-MOE 99 490275 77
5-10-5 2'-MOE 90 513462 79 3-10-4 2'-MOE 213 513463 81 3-10-4
2'-MOE 214 490277 74 5-10-5 2'-MOE 91 513487 83 3-10-4 2'-MOE 215
513504 81 3-10-4 2'-MOE 216 513507 86 3-10-4 2'-MOE 217 513508 85
3-10-4 2'-MOE 218 490424 69 5-10-5 2'-MOE 101 491122 87 5-10-5
2'-MOE 220 513642 79 3-10-4 2'-MOE 221 490149 71 5-10-5 2'-MOE 109
513419 90 3-10-4 2'-MOE 222 513420 89 3-10-4 2'-MOE 223 513421 88
3-10-4 2'-MOE 224 490197 77 5-10-5 2'-MOE 116 513446 89 3-10-4
2'-MOE 226 513447 83 3-10-4 2'-MOE 227 490209 79 5-10-5 2'-MOE 118
513454 84 3-10-4 2'-MOE 228 513455 92 3-10-4 2'-MOE 229 513456 89
3-10-4 2'-MOE 230 513457 83 3-10-4 2'-MOE 231
Example 10
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0720] Antisense oligonucleotides from the studies above,
exhibiting in vitro inhibition of Target-X mRNA, were selected and
tested at various doses in Hep3B cells. ISIS 403052, ISIS 407643,
ISIS 407935, ISIS 407936, ISIS 407939, ISIS 416446, ISIS 416459,
ISIS 416472, ISIS 416507, ISIS 416508, ISIS 416549, ISIS 422086,
ISIS 422087, ISIS 422130, ISIS and 422142, 5-10-5 MOE gapmers
targeting human Target-X, which were described in an earlier
publication (WO 2009/061851).
[0721] Cells were plated at a density of 20,000 cells per well and
transfected using electroporation with 0.625 .mu.M, 1.25 .mu.M,
2.50 .mu.M, 5.00 .mu.M and 10.00 .mu.M concentrations of antisense
oligonucleotide, as specified in Table 25. After a treatment period
of approximately 16 hours, RNA was isolated from the cells and
Target-X mRNA levels were measured by quantitative real-time PCR.
Human Target-X primer probe set RTS2927 was used to measure mRNA
levels. Target-X mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN.RTM.. Results are presented as
percent inhibition of Target-X, relative to untreated control
cells.
[0722] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is also presented in Table 25. As illustrated
in Table 25, Target-X mRNA levels were reduced in a dose-dependent
manner in antisense oligonucleotide treated cells. The data also
confirms that the newly designed gapmers are potent than gapmers
from the previous publication.
TABLE-US-00026 TABLE 25 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 0.625 1.25 2.50
5.00 10.00 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M (.mu.M)
403052 21 35 63 82 89 1.9 407643 29 46 67 83 90 1.4 407935 52 68 80
89 91 <0.6 407936 31 51 62 78 84 1.4 407939 30 61 74 83 88 1.0
416446 37 53 64 76 83 1.2 416459 51 76 83 90 92 <0.6 416472 37
52 66 78 85 1.2 416507 45 68 82 87 90 0.7 416508 33 56 74 84 89 1.1
416549 57 71 78 82 85 <0.6 422086 46 67 77 89 92 0.7 422087 50
69 74 86 91 0.6 422130 32 65 78 92 93 0.9 422142 59 73 84 86 88
<0.6 490103 52 57 66 83 88 0.9 490149 34 58 71 85 91 1.0 490196
26 59 66 79 84 1.3 490197 39 63 74 81 90 0.8 490208 44 70 76 83 88
0.6 490275 36 58 76 85 89 1.0 490277 37 63 73 87 87 0.8 490279 40
54 72 83 89 1.0 490323 49 68 79 86 90 <0.6 490368 39 62 76 86 91
0.8 490396 36 53 69 80 87 1.1 490424 45 65 69 76 82 0.6 490803 57
74 85 89 92 <0.6 513419 60 71 85 95 96 <0.6 513420 37 69 79
94 96 0.7 513421 46 64 84 95 97 0.6 513446 47 81 88 95 96 <0.6
513447 56 74 81 92 96 <0.6 513454 50 77 82 93 95 <0.6 513455
74 82 91 96 96 <0.6 513456 66 80 88 94 95 <0.6 513457 54 67
80 87 89 <0.6 513462 49 72 84 87 89 <0.6 513463 36 62 76 85
89 0.9 513487 42 56 73 87 93 0.9 513504 47 65 81 90 91 0.6 513505
39 50 78 85 92 1.0 513507 52 73 83 89 93 <0.6 513508 56 78 85 91
94 <0.6
Example 11
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0723] Additional antisense oligonucleotides from the studies
above, exhibiting in vitro inhibition of Target-X mRNA, were tested
at various doses in Hep3B cells. ISIS 407935, ISIS 407939, ISIS
416446, ISIS 416472, ISIS 416507, ISIS 416549, ISIS 422086, ISIS
422087, ISIS 422096, and ISIS 422142 5-10-5 MOE gapmers targeting
human Target-X, which were described in an earlier publication (WO
2009/061851).
[0724] Cells were plated at a density of 20,000 cells per well and
transfected using electroporation with 0.3125 .mu.M, 0.625 .mu.M,
1.25 .mu.M, 2.50 .mu.M, 5.00 .mu.M and 10.00 .mu.M concentrations
of antisense oligonucleotide, as specified in Table 26. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and Target-X mRNA levels were measured by quantitative
real-time PCR. Human Target-X primer probe set RTS2927 was used to
measure mRNA levels. Target-X mRNA levels were adjusted according
to total RNA content, as measured by RIBOGREEN.RTM.. Results are
presented as percent inhibition of Target-X, relative to untreated
control cells. As illustrated in Table 26, Target-X mRNA levels
were reduced in a dose-dependent manner in antisense
oligonucleotide treated cells. The data also confirms that the
newly designed gapmers are more potent than gapmers from the
previous publication.
TABLE-US-00027 TABLE 26 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 0.3125 0.625
1.250 2.500 5.000 10.000 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M
.mu.M .mu.M (.mu.M) 407935 30 49 75 86 91 94 0.6 407939 30 48 61 78
85 90 0.8 416446 27 52 63 75 85 90 0.7 416472 38 51 72 83 88 94 0.5
416507 58 81 76 84 89 92 <0.3 416549 52 67 75 81 88 89 0.3
422086 48 49 68 78 86 91 0.5 422087 30 56 66 83 72 92 0.6 422096 47
63 70 77 83 85 <0.3 422142 69 85 87 85 89 91 <0.3 490103 52
57 68 78 87 93 0.4 490149 33 64 62 77 86 93 0.5 490197 38 46 60 75
87 93 0.7 490208 46 62 73 83 88 91 0.4 490209 40 54 72 79 85 94 0.5
490275 52 61 67 78 85 91 0.3 490277 33 59 77 79 91 94 0.5 490323 43
61 72 69 84 87 0.4 490368 50 64 78 83 90 92 <0.3 490396 46 64 68
84 84 90 0.3 490424 24 47 58 72 76 82 1.0 490803 45 60 70 84 88 89
0.3 513419 32 53 76 88 93 95 0.5 513420 35 59 72 82 94 97 0.5
513421 46 67 78 86 94 96 <0.3 513446 26 61 77 89 91 97 0.5
513447 22 48 60 82 91 95 0.8 513454 25 59 76 86 94 96 0.5 513455 60
73 85 89 95 96 <0.3 513456 49 60 81 88 94 95 <0.3 513457 43
50 72 77 87 92 0.5 513462 25 48 58 76 83 88 0.8 513463 22 45 66 73
85 88 0.9 513487 41 56 65 79 86 90 0.4 513504 19 48 63 76 87 92 0.9
513505 11 21 54 73 85 90 1.4 513507 47 55 72 82 90 91 0.3 513508 31
59 74 85 92 93 0.5 513642 43 55 67 80 88 92 0.4
Example 12
Tolerability of 2'-MOE Gapmers Targeting Human Target-X in BALB/c
Mice
[0725] BALB/c mice are a multipurpose mice model, frequently
utilized for safety and efficacy testing. The mice were treated
with ISIS antisense oligonucleotides selected from studies
described above and evaluated for changes in the levels of various
plasma chemistry markers.
Treatment
[0726] Groups of male BALB/c mice were injected subcutaneously
twice a week for 3 weeks with 50 mg/kg of ISIS 407935, ISIS 416472,
ISIS 416549, ISIS 422086, ISIS 422087, ISIS 422096, ISIS 422142,
ISIS 490103, ISIS 490149, ISIS 490196, ISIS 490208, ISIS 490209,
ISIS 513419, ISIS 513420, ISIS 513421, ISIS 513454, ISIS 513455,
ISIS 513456, ISIS 513457, ISIS 513462, ISIS 513463, ISIS 513487,
ISIS 513504, ISIS 513508, and ISIS 513642. One group of male BALB/c
mice was injected subcutaneously twice a week for 3 weeks with PBS.
Mice were euthanized 48 hours after the last dose, and organs and
plasma were harvested for further analysis.
Plasma Chemistry Markers
[0727] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin,
albumin, and BUN were measured using an automated clinical
chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.).
[0728] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 407935, ISIS
416472, ISIS 416549, ISIS 422087, ISIS 422096, ISIS 490103, ISIS
490196, ISIS 490208, ISIS 513454, ISIS 513455, ISIS 513456, ISIS
513457, ISIS 513487, ISIS 513504, and ISIS 513508 were considered
very tolerable in terms of liver function. Based on these criteria,
ISIS 422086, ISIS 490209, ISIS 513419, ISIS 513420, and ISIS 513463
were considered tolerable in terms of liver function.
Example 13
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
cells
[0729] Additional antisense oligonucleotides from the studies
above, exhibiting in vitro inhibition of Target-X mRNA were
selected and tested at various doses in Hep3B cells. Also tested
was ISIS 407939, a 5-10-5 MOE gapmer, which was described in an
earlier publication (WO 2009/061851).
[0730] Cells were plated at a density of 20,000 cells per well and
transfected using electroporation with 0.074 .mu.M, 0.222 .mu.M,
0.667 .mu.M, 2.000 .mu.M, and 6.000 .mu.M concentrations of
antisense oligonucleotide, as specified in Table 27. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and Target-X mRNA levels were measured by quantitative
real-time PCR. Human Target-X primer probe set RTS2927 (described
hereinabove in Example 1) was used to measure mRNA levels. Target-X
mRNA levels were adjusted according to total RNA content, as
measured by RIBOGREEN.RTM.. Results are presented as percent
inhibition of Target-X, relative to untreated control cells.
[0731] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is also presented in Table 27. As illustrated
in Table 27, Target-X mRNA levels were reduced in a dose-dependent
manner in antisense oligonucleotide treated cells. Many of the
newly designed antisense oligonucleotides provided in Table 27
achieved an IC.sub.50 of less than 0.9 .mu.M and, therefore, are
more potent than ISIS 407939.
TABLE-US-00028 TABLE 27 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 0.074 0.222
0.667 2.000 6.000 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M
(.mu.M) 407939 2 17 53 70 87 0.9 472970 17 47 75 92 95 0.3 472988 0
8 21 54 92 1.4 472996 18 59 74 93 95 0.2 473244 91 95 97 99 99
<0.07 473286 6 53 85 92 98 0.3 473359 2 3 20 47 67 2.6 473392 71
85 88 92 96 <0.07 473393 91 96 97 98 99 <0.07 473547 85 88 93
97 98 <0.07 473567 0 25 66 88 95 0.7 473589 8 47 79 94 99 0.3
482814 23 68 86 93 96 0.1 482815 6 48 65 90 96 0.4 482963 3 68 85
94 96 0.2 483241 14 33 44 76 93 0.6 483261 14 21 41 72 88 0.7
483290 0 1 41 69 92 1.0 483414 8 1 36 76 91 0.9 483415 0 40 52 84
94 0.6 484559 26 51 78 87 97 0.2 484713 6 5 53 64 88 0.9
Example 14
Modified Antisense Oligonucleotides Comprising 2'-O-Methoxyethyl
(2'-MOE) and 6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt)
Modifications Targeting Human Target-X
[0732] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. Also tested was ISIS 407939, a 5-10-5
MOE gapmer targeting human Target-X, which was described in an
earlier publication (WO 2009/061851). ISIS 472998, ISIS 492878, and
ISIS 493201 and 493182, 2-10-2 cEt gapmers, described in the
Examples above were also included in the screen.
[0733] The newly designed modified antisense oligonucleotides are
16 nucleotides in length and their motifs are described in Table
28. The chemistry column of Table 28 presents the sugar motif of
each oligonucleotide, wherein "e" indicates a 2'-O-methoxyethyl
(2'-MOE) nucleoside, "k" indicates a 6'-(S)--CH.sub.3 bicyclic
nucleoside (e.g cEt) and "d" indicates a 2'-deoxyribonucleoside.
The internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine residues
throughout each oligonucleotide are 5-methylcytosines.
[0734] Each gapmer listed in Table 28 is targeted to the human
Target-X genomic sequence.
[0735] Activity of newly designed gapmers was compared to ISIS
407939. Cultured Hep3B cells at a density of 20,000 cells per well
were transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 was used to measure mRNA levels. Target-X mRNA levels were
adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells and demonstrate that
several of the newly designed gapmers are more potent than ISIS
407939. A total of 685 oligonucleotides were tested. Only those
oligonucleotides which were selected for further studies are shown
in Table 28.
TABLE-US-00029 TABLE 28 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No %
inhibition Chemistry SEQ CODE 407939 68 eeeee-d(10)-eeeee 72 492878
73 kk-d(10)-kk 493182 80 kk-d(10)-kk 493201 84 kk-d(10)-kk 472998
91 kk-d(10)-kk 515640 75 eee-d(10)-kkk 23 515637 77 eee-d(10)-kkk
232 515554 72 eee-d(10)-kkk 233 515406 80 kkk-d(10)-eee 234 515558
81 eee-d(10)-kkk 234 515407 88 kkk-d(10)-eee 235 515408 85
kkk-d(10)-eee 236 515422 86 kkk-d(10)-eee 237 515423 90
kkk-d(10)-eee 238 515575 84 eee-d(10)-kkk 238 515424 87
kkk-d(10)-eee 239 515432 78 kkk-d(10)-eee 240 515433 71
kkk-d(10)-eee 241 515434 76 kkk-d(10)-eee 242 515334 85
kkk-d(10)-eee 243 515649 61 eee-d(10)-kkk 88 515338 86
kkk-d(10)-eee 244 515438 76 kkk-d(10)-eee 245 515439 75
kkk-d(10)-eee 246 516003 87 eee-d(10)-kkk 247 515647 60
eee-d(10)-kkk 77 515639 78 eee-d(10)-kkk 34 493201 84 eee-d(10)-kkk
202 515648 36 kkk-d(10)-eee 248 515641 69 kk-d(10)-eeee 39 515650
76 kkk-d(10)-eee 44 515354 87 eee-d(10)-kkk 249 515926 87
eee-d(10)-kkk 250 515366 87 kk-d(10)-eeee 251 515642 58
kkk-d(10)-eee 252 515643 81 eee-d(10)-kkk 53 515944 84
kk-d(10)-eeee 253 515380 90 kkk-d(10)-eee 254 515532 83
kkk-d(10)-eee 254 515945 85 kk-d(10)-eeee 254 515381 82
kk-d(10)-eeee 255 515382 95 kkk-d(10)-eee 256 515948 94
eee-d(10)-kkk 256 515949 87 eee-d(10)-kkk 257 515384 89
kkk-d(10)-eee 258 515635 82 kk-d(10)-eeee 65 515638 90
kkk-d(10)-eee 67 515386 92 kk-d(10)-eeee 259 515951 84
eee-d(10)-kkk 259 515387 78 kkk-d(10)-eee 260 515952 89
kkk-d(10)-eee 260 515636 90 kkk-d(10)-eee 69 515388 84
eee-d(10)-kkk 261 e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
Example 15
Tolerability of Modified Oligonucleotides Comprising
2'-O-Methoxyethyl (2'-MOE) and 6'-(S)--CH.sub.3 Bicyclic Nucleoside
(e.g cEt) Modifications Targeting Human Target-X in BALB/c Mice
[0736] BALB/c mice were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for changes in the levels of various plasma chemistry
markers.
[0737] Additionally, the newly designed modified antisense
oligonucleotides were also added to this screen. The newly designed
chimeric antisense oligonucleotides are 16 nucleotides in length
and their motifs are described in Table 29. The chemistry column of
Table 29 presents the sugar motif of each oligonucleotide, wherein
"e" indicates a 2'-O-methoxyethyl (2'-MOE) nucleoside, "k"
indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside (e.g cEt) and "d"
indicates a 2'-deoxyribonucleoside. The internucleoside linkages
throughout each gapmer are phosphorothioate (P.dbd.S) linkages. All
cytosine residues throughout each oligonucleotide are
5-methylcytosines.
[0738] Each gapmer listed in Table 29 is targeted to the human
Target-X genomic sequence.
TABLE-US-00030 TABLE 29 Modified chimeric antisense
oligonucleotides targeted to Target-X ISIS No Chemistry SEQ CODE
516044 eee-d(10)-kkk 21 516045 eee-d(10)-kkk 22 516058
eee-d(10)-kkk 26 516059 eee-d(10)-kkk 27 516060 eee-d(10)-kkk 28
516061 eee-d(10)-kkk 29 516062 eee-d(10)-kkk 30 516046
eee-d(10)-kkk 37 516063 eee-d(10)-kkk 38 516064 eee-d(10)-kkk 89
516065 eee-d(10)-kkk 262 516066 eee-d(10)-kkk 263 516047
eee-d(10)-kkk 41 516048 eee-d(10)-kkk 42 516049 eee-d(10)-kkk 81
516050 eee-d(10)-kkk 45 516051 eee-d(10)-kkk 48 516052
eee-d(10)-kkk 49 515652 eee-d(10)-kkk 50 508039 eee-d(10)-kkk 264
516053 eee-d(10)-kkk 265 515654 eee-d(10)-kkk 76 515656
eee-d(10)-kkk 77 516054 eee-d(10)-kkk 57 516055 eee-d(10)-kkk 59
515655 eee-d(10)-kkk 61 516056 eee-d(10)-kkk 63 516057
eee-d(10)-kkk 64 515653 eee-d(10)-kkk 71 515657 eee-d(10)-kkk 73 e
= 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
Treatment
[0739] Groups of 4-6-week old male BALB/c mice were injected
subcutaneously twice a week for 3 weeks with 50 mg/kg/week of ISIS
457851, ISIS 515635, ISIS 515636, ISIS 515637, ISIS 515638, ISIS
515639, ISIS 515640, ISIS 515641, ISIS 515642, ISIS 515643, ISIS
515647, ISIS 515648, ISIS 515649, ISSI 515650, ISIS 515652, ISIS
515653, ISIS 515654, ISIS 515655, ISIS 515656, ISIS 515657, ISIS
516044, ISIS 516045, ISIS 516046, ISIS 516047, ISIS 516048, ISIS
516049, ISIS 516050, ISIS 516051, ISIS 516052, ISIS 516053, ISIS
516054, ISIS 516055, ISIS 516056, ISIS 516057, ISIS 516058, ISIS
516059, ISIS 516060, ISIS 516061, ISIS 516062, ISIS 516063, ISIS
516064, ISIS 516065, and ISIS 516066. One group of 4-6-week old
male BALB/c mice was injected subcutaneously twice a week for 3
weeks with PBS. Mice were euthanized 48 hours after the last dose,
and organs and plasma were harvested for further analysis.
Plasma Chemistry Markers
[0740] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin,
albumin, and BUN were measured using an automated clinical
chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.).
[0741] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 515636, ISIS
515639, ISIS 515641, ISIS 515642, ISIS 515648, ISIS 515650, ISIS
515652, ISIS 515653, ISIS 515655, ISIS 515657, ISIS 516044, ISIS
516045, ISIS 516047, ISIS 516048, ISIS 516051, ISIS 516052, ISIS
516053, ISIS 516055, ISIS 516056, ISIS 516058, ISIS 516059, ISIS
516060, ISIS 516061, ISIS 516062, ISIS 516063, ISIS 516064, ISIS
516065, and ISIS 516066 were considered very tolerable in terms of
liver function. Based on these criteria, ISIS 457851, ISIS 515635,
ISIS 515637, ISIS 515638, ISIS 515643, ISIS 515647, ISIS 515649,
ISIS 515650, ISIS 515652, ISIS 515654, ISIS 515656, ISIS 516056,
and ISIS 516057 were considered tolerable in terms of liver
function.
Example 16
Efficacy of Modified Oligonucleotides Comprising 2'-O-Methoxyethyl
(2'-MOE) and 6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt)
Modifications Targeting Human Target-X in Transgenic Mice
[0742] Transgenic mice were developed at Taconic farms harboring a
Target-X genomic DNA fragment. The mice were treated with ISIS
antisense oligonucleotides selected from studies described above
and evaluated for efficacy.
Treatment
[0743] Groups of 3-4 male and female transgenic mice were injected
subcutaneously twice a week for 3 weeks with 20 mg/kg/week of ISIS
457851, ISIS 515636, ISIS 515639, ISIS 515653, ISIS 516053, ISIS
516065, and ISIS 516066. One group of mice was injected
subcutaneously twice a week for 3 weeks with control
oligonucleotide, ISIS 141923 (CCTTCCCTGAAGGTTCCTCC, 5-10-5 MOE
gapmer with no known murine target, SEQ ID NO: 9). One group of
mice was injected subcutaneously twice a week for 3 weeks with PBS.
Mice were euthanized 48 hours after the last dose, and organs and
plasma were harvested for further analysis.
RNA Analysis
[0744] RNA was extracted from plasma for real-time PCR analysis of
Target-X, using primer probe set RTS2927. The mRNA levels were
normalized using RIBOGREEN.RTM.. Results are presented as percent
inhibition of Target-X, relative to control. As shown in Table 30,
each of the antisense oligonucleotides achieved reduction of human
Target-X mRNA expression over the PBS control. Treatment with the
control oligonucleotide did not achieve reduction in Target-X
levels, as expected.
TABLE-US-00031 TABLE 30 Percent inhibition of Target-X mRNA in
transgenic mice ISIS No % inhibition 141923 0 457851 76 515636 66
515639 49 515653 78 516053 72 516065 59 516066 39
Protein Analysis
[0745] Plasma protein levels of Target-X were estimated using a
Target-X ELISA kit (purchased from Hyphen Bio-Med). Results are
presented as percent inhibition of Target-X, relative to control.
As shown in Table 31, several antisense oligonucleotides achieved
reduction of human Target-X protein expression over the PBS
control.
TABLE-US-00032 TABLE 31 Percent inhibition of Target-X protein
levels in transgenic mice ISIS No % inhibition 141923 0 457851 64
515636 68 515639 46 515653 0 516053 19 516065 0 516066 7
Example 17
Efficacy of Modified Oligonucleotides Comprising 2'-O-Methoxyethyl
(2'-MOE) and 6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt)
Modifications Targeting Human Target-X in Transgenic Mice
[0746] Transgenic mice were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for efficacy.
Treatment
[0747] Groups of 2-4 male and female transgenic mice were injected
subcutaneously twice a week for 3 weeks with 10 mg/kg/week of ISIS
407935, ISIS 416472, ISIS 416549, ISIS 422087, ISIS 422096, ISIS
473137, ISIS 473244, ISIS 473326, ISIS 473327, ISIS 473359, ISIS
473392, ISIS 473393, ISIS 473547, ISIS 473567, ISIS 473589, ISIS
473630, ISIS 484559, ISIS 484713, ISIS 490103, ISIS 490196, ISIS
490208, ISIS 513419, ISIS 513454, ISIS 513455, ISIS 513456, ISIS
513457, ISIS 513487, ISIS 513508, ISIS 515640, ISIS 515641, ISIS
515642, ISIS 515648, ISIS 515655, ISIS 515657, ISIS 516045, ISIS
516046, ISIS 516047, ISIS 516048, ISIS 516051, ISIS 516052, ISIS
516055, ISIS 516056, ISIS 516059, ISIS 516061, ISIS 516062, and
ISIS 516063. One group of mice was injected subcutaneously twice a
week for 3 weeks with PBS. Mice were euthanized 48 hours after the
last dose, and organs and plasma were harvested for further
analysis.
Protein Analysis
[0748] Plasma protein levels of Target-X were estimated using a
Target-X ELISA kit (purchased from Hyphen Bio-Med). Results are
presented as percent inhibition of Target-X, relative to control.
As shown in Table 32, several antisense oligonucleotides achieved
reduction of human Target-X over the PBS control.
TABLE-US-00033 TABLE 32 Percent inhibition of Target-X plasma
protein levels in transgenic mice ISIS No % inhibition 407935 80
416472 49 416549 29 422087 12 422096 21 473137 57 473244 67 473326
42 473327 100 473359 0 473392 22 473393 32 473547 73 473567 77
473589 96 473630 75 484559 75 484713 56 490103 0 490196 74 490208
90 513419 90 513454 83 513455 91 513456 81 513457 12 513487 74
513508 77 515640 83 515641 87 515642 23 515648 32 515655 79 515657
81 516045 52 516046 79 516047 65 516048 79 516051 84 516052 72
516055 70 516056 0 516059 39 516061 64 516062 96 516063 24
Example 18
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0749] Antisense oligonucleotides exhibiting in vitro inhibition of
Target-X mRNA were selected and tested at various doses in Hep3B
cells. Also tested was ISIS 407939, a 5-10-5 MOE gapmer targeting
human Target-X, which was described in an earlier publication (WO
2009/061851).
[0750] Cells were plated at a density of 20,000 cells per well and
transfected using electroporation with 0.074 .mu.M, 0.222 .mu.M,
0.667 .mu.M, 2.000 .mu.M, and 6.000 .mu.M concentrations of
antisense oligonucleotide, as specified in Table 33. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and Target-X mRNA levels were measured by quantitative
real-time PCR. Human Target-X primer probe set RTS2927 (described
hereinabove in Example 1) was used to measure mRNA levels. Target-X
mRNA levels were adjusted according to total RNA content, as
measured by RIBOGREEN.RTM.. Results are presented as percent
inhibition of Target-X, relative to untreated control cells.
[0751] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is also presented in Table 33. As illustrated
in Table 33, Target-X mRNA levels were reduced in a dose-dependent
manner in antisense oligonucleotide treated cells. Many of the
newly designed antisense oligonucleotides provided in Table 33
achieved an IC.sub.50 of less than 2.0 .mu.M and, therefore, are
more potent than ISIS 407939.
TABLE-US-00034 TABLE 33 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 0.074 0.222
0.667 2.000 6.000 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M
(.mu.M) 407939 0 9 21 58 76 2.0 515636 14 32 50 62 81 0.7 515639 10
24 41 61 67 1.3 515640 4 16 35 52 63 2.0 515641 0 21 27 55 66 1.9
515642 3 13 36 44 66 2.2 515648 8 10 10 5 16 >6.0 515653 9 35 26
55 71 1.5 515655 0 0 6 13 42 >6.0 515657 0 13 17 38 51 6.0
516045 0 6 15 19 40 >6.0 516046 0 7 32 48 69 2.1 516047 12 27 41
50 63 1.8 516051 9 8 34 52 66 2.0 516052 17 42 27 53 75 1.2 516053
9 7 28 63 77 1.3 516055 0 3 27 54 75 2.0 516056 0 4 14 52 66 2.6
516057 0 34 33 51 70 1.6 516058 13 12 25 47 74 2.0 516059 4 15 36
47 68 1.9 516060 0 1 39 29 63 3.2 516061 0 0 24 0 3 <6.0 516062
0 20 43 65 78 1.0 516063 0 8 10 37 61 3.8 516064 0 3 13 45 69 2.7
516065 0 14 38 63 76 1.3 516066 0 3 30 55 75 1.7
Example 19
Modified Oligonucleotides Comprising 2'-O-Methoxyethyl (2'-MOE) and
6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt) Modifications
Targeting Human Target-X
[0752] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. ISIS 472998, ISIS 515652, ISIS 515653,
ISIS 515654, ISIS 515655, ISIS 515656, and ISIS 515657, described
in the Examples above were also included in the screen.
[0753] The newly designed chimeric antisense oligonucleotides are
16 or 17 nucleotides in length and their motifs are described in
Table 34. The chemistry column of Table 34 presents the sugar motif
of each oligonucleotide, wherein "e" indicates a 2'-O-methoxyethyl
(2'-MOE) nucleoside, "k" indicates a 6'-(S)--CH.sub.3 bicyclic
nucleoside (e.g cEt) and "d" indicates a 2'-deoxyribonucleoside.
The internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine residues
throughout each oligonucleotide are 5-methylcytosines.
[0754] Each gapmer listed in Table 34 is targeted to the human
Target-X genomic sequence.
[0755] Activity of newly designed gapmers was compared to ISIS
407939. Cultured Hep3B cells at a density of 20,000 cells per well
were transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 (described hereinabove in Example 1) was used to measure
mRNA levels. Target-X mRNA levels were adjusted according to total
RNA content, as measured by RIBOGREEN.RTM.. Results are presented
as percent inhibition of Target-X, relative to untreated control
cells.
TABLE-US-00035 TABLE 34 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No %
inhibition Chemistry SEQ CODE 472998 85 kk-d(10)-kk 74 515652 63
eee-d(10)-kkk 50 515653 67 eee-d(10)-kkk 71 515654 78 eee-d(10)-kkk
86 515655 41 eee-d(10)-kkk 61 515656 74 eee-d(10)-kkk 87 515657 49
eee-d(10)-kkk 73 529265 52 eek-d(10)-keke 267 529332 82
eek-d(10)-keke 268 529334 78 eek-d(10)-keke 269 529186 85
eek-d(10)-keke 213 529223 81 eek-d(10)-kkke 213 529129 75
eee-d(10)-kkk 270 529149 82 kkk-d(10)-eee 270 529177 77
eek-d(10)-keke 214 529214 78 eek-d(10)-kkke 214 529178 79
eek-d(10)-keke 271 529215 82 eek-d(10)-kkke 271 529179 71
eek-d(10)-keke 272 529216 77 eek-d(10)-kkke 272 529193 69
eek-d(10)-keke 273 529230 70 eek-d(10)-kkke 273 529136 48
eee-d(10)-kkk 274 529156 68 kkk-d(10)-eee 274 529194 44
eek-d(10)-keke 275 529231 56 eek-d(10)-kkke 275 529137 34
eee-d(10)-kkk 276 529157 79 kkk-d(10)-eee 276 529336 57
eek-d(10)-keke 277 529338 73 eek-d(10)-keke 278 529195 55
eek-d(10)-keke 279 529232 68 eek-d(10)-kkke 279 529340 65
eek-d(10)-keke 280 529342 69 eek-d(10)-keke 281 529812 69
k-d(10)-kekee 282 529831 62 k-d(10)-kdkee 282 529733 64
ke-d(10)-keke 283 529753 52 ek-d(10)-keke 283 529773 57
ke-d(10)-kdke 283 529793 36 ek-d(10)-kdke 283 529862 48
kde-d(10)-kdke 284 529882 35 edk-d(10)-kdke 284 529902 44
k-(d4)-k-(d4)-k-(d4)-ke 284 529559 71 eek-d(10)-kke 26 529584 57
kee-d(10)-kke 26 529609 58 edk-d(10)-kke 26 529634 49 kde-d(10)-kke
26 529659 52 kddk-d(9)-kke 26 529684 48 kdde-d(9)-kke 26 529709 61
eddk-d(9)-kke 26 529922 52 eeee-d(9)-kke 26 529344 50
eek-d(10)-keke 285 529138 32 eee-d(10)-kkk 286 529158 75
kkk-d(10)-eee 286 529184 75 eek-d(10)-keke 215 529221 78
eek-d(10)-kkke 215 529127 67 eee-d(10)-kkk 287 529147 79
kkk-d(10)-eee 287 529346 58 eek-d(10)-keke 288 529348 65
eek-d(10)-keke 289 529350 77 eek-d(10)-keke 290 529813 20
k-d(10)-kekee 291 529832 47 k-d(10)-kdkee 291 529734 63
ke-d(10)-keke 292 529754 58 ek-d(10)-keke 292 529774 49
ke-d(10)-kdke 292 529794 51 ek-d(10)-kdke 292 529863 64
kde-d(10)-kdke 293 529883 78 edk-d(10)-kdke 293 529903 36
k-d(4)-k-d(4)-k-d(4)-ke 293 529560 71 eek-d(10)-kke 27 529585 70
kee-d(10)-kke 27 529610 66 edk-d(10)-kke 27 529635 45 kde-d(10)-kke
27 529660 53 kddk-d(9)-kke 27 529685 42 kdde-d(9)-kke 27 529710 60
eddk-d(9)-kke 27 529923 63 eeee-d(9)-kke 27 529196 74
eek-d(10)-keke 294 529233 80 eek-d(10)-kkke 294 529139 75
eee-d(10)-kkk 295 529159 62 kkk-d(10)-eee 295 529352 74
eek-d(10)-keke 296 529354 67 eek-d(10)-keke 297 529197 43
eek-d(10)-keke 298 529234 58 eek-d(10)-kkke 298 529140 29
eee-d(10)-kkk 299 529160 59 kkk-d(10)-eee 299 529180 80
eek-d(10)-keke 216 529217 79 eek-d(10)-kkke 216 529814 51
k-d(10)-kekee 300 529833 52 k-d(10)-kdkee 300 529735 43
ke-d(10)-keke 301 529755 60 ek-d(10)-keke 301 529775 38
ke-d(10)-kdke 301 529795 58 ek-d(10)-kdke 301 529864 41
kde-d(10)-kdke 302 529884 48 edk-d(10)-kdke 302 529904 44
k-d(4)-k-(d4)-k-d(4)-ke 302 529934 61 eek-d(10)-keke 302 529356 71
eek-d(10)-keke 303 529561 75 eek-d(10)-kke 28 529586 65
kee-d(10)-kke 28 529611 54 edk-d(10)-kke 28 529636 39 kde-d(10)-kke
28 529661 67 kddk-d(9)-kke 28 529686 66 kdde-d(9)-kke 28 529711 60
eddk-d(9)-kke 28 529924 62 eeee-d(9)-kke 28 529358 82
eek-d(10)-keke 304 529181 79 eek-d(10)-keke 217 529218 73
eek-d(10)-kkke 217 529182 85 eek-d(10)-keke 218 529219 84
eek-d(10)-kkke 218 529360 84 eek-d(10)-keke 305 529362 87
eek-d(10)-keke 306 529364 81 eek-d(10)-keke 307 529366 77
eek-d(10)-keke 308 529198 28 eek-d(10)-keke 309 529235 8
eek-d(10)-kkke 309 529141 34 eee-d(10)-kkk 310 529161 66
kkk-d(10)-eee 310 529368 27 eek-d(10)-keke 311 529370 44
eek-d(10)-keke 312 529372 61 eek-d(10)-keke 313 529374 71
eek-d(10)-keke 314 529376 63 eek-d(10)-keke 315 529378 68
eek-d(10)-keke 316 529380 79 eek-d(10)-keke 317 529382 77
eek-d(10)-keke 318 529384 75 eek-d(10)-keke 319 529386 40
eek-d(10)-keke 320 529240 73 eek-d(10)-keke 321 529241 67
eek-d(10)-keke 322 529242 42 eek-d(10)-keke 323 529243 60
eek-d(10)-keke 324 529388 65 eek-d(10)-keke 325 529815 37
k-d(10)-kekee 326 529834 44 k-d(10)-kdkee 326 529736 47
ke-d(10)-keke 327 529756 78 ek-d(10)-keke 327 529776 37
ke-d(10)-kdke 327 529796 71 ek-d(10)-kdke 327 529865 70
kde-d(10)-kdke 328 529885 59 edk-d(10)-kdke 328 529905 54
k-(d4)-k-(d4)-k-(d4)-ke 328 529935 70 eek-d(10)-keke 328 529562 87
eek-d(10)-kke 29 529587 68 kee-d(10)-kke 29 529612 67 edk-d(10)-kke
29 529637 64 kde-d(10)-kke 29 529662 62 kddk-d(9)-kke 29 529687 63
kdde-d(9)-kke 29 529712 61 eddk-d(9)-kke 29 529925 61 eeee-d(9)-kke
29 529816 77 k-d(10)-kekee 329 529835 80 k-d(10)-kdkee 329 529737
82 ke-d(10)-keke 330 529757 83 ek-d(10)-keke 330 529777 68
ke-d(10)-kdke 330 529797 77 ek-d(10)-kdke 330 529866 15
kde-d(10)-kdke 331 529886 71 edk-d(10)-kdke 331 529906 63
k-(d4)-k-(d4)-k-(d4)-ke 331 529936 78 eek-d(10)-keke 331 529563 89
eek-d(10)-kke 30 529588 84 kee-d(10)-kke 30 529613 80 edk-d(10)-kke
30 529638 48 kde-d(10)-kke 30 529663 85 kddk-d(9)-kke 30 529688 42
kdde-d(9)-kke 30 529713 81 eddk-d(9)-kke 30 529926 67 eeee-d(9)-kke
30 529390 53 eek-d(10)-keke 332 529392 63 eek-d(10)-keke 333 529394
58 eek-d(10)-keke 334 529396 56 eek-d(10)-keke 335 529398 62
eek-d(10)-keke 336 529400 44 eek-d(10)-keke 337 529402 39
eek-d(10)-keke 338 529404 46 eek-d(10)-keke 339 529406 63
eek-d(10)-keke 340 529244 58 eek-d(10)-keke 341 529245 68
eek-d(10)-keke 342 529246 60 eek-d(10)-keke 343 529247 36
eek-d(10)-keke 344 529248 43 eek-d(10)-keke 345 529249 23
eek-d(10)-keke 346 529250 69 eek-d(10)-keke 347 529251 15
eek-d(10)-keke 348 529252 44 eek-d(10)-keke 349 529253 42
eek-d(10)-keke 350 529408 67 eek-d(10)-keke 351 529410 19
eek-d(10)-keke 352 529412 57 eek-d(10)-keke 353 529414 80
eek-d(10)-keke 354 529416 85 eek-d(10)-keke 355 529418 70
eek-d(10)-keke 356 529420 78 eek-d(10)-keke 357 529422 19
eek-d(10)-keke 358 529424 48 eek-d(10)-keke 359 529426 66
eek-d(10)-keke 360 529428 59 eek-d(10)-keke 361 529430 83
eek-d(10)-keke 362 529432 84 eek-d(10)-keke 363 529199 71
eek-d(10)-keke 364 529236 76 eek-d(10)-kkke 364 529142 64
eee-d(10)-kkk 365 529162 60 kkk-d(10)-eee 365 529254 46
eek-d(10)-keke 366 529255 52 eek-d(10)-keke 367 529256 57
eek-d(10)-keke 368 529257 55 eek-d(10)-keke 369 529258 3
eek-d(10)-keke 370 529259 71 eek-d(10)-keke 371 529260 72
eek-d(10)-keke 372 529261 56 eek-d(10)-keke 373 529262 56
eek-d(10)-keke 374 529263 59 eek-d(10)-keke 375 529264 49
eek-d(10)-keke 376 529434 83 eek-d(10)-keke 377 529436 80
eek-d(10)-keke 378 529438 79 eek-d(10)-keke 379 529440 87
eek-d(10)-keke 380 529442 68 eek-d(10)-keke 381 529443 72
eek-d(10)-keke 382 529444 68 eek-d(10)-keke 383 529445 85
eek-d(10)-keke 384 529446 72 eek-d(10)-keke 385 529447 60
eek-d(10)-keke 386 529448 77 eek-d(10)-keke 387 529807 78
k-d(10)-kekee 388 529826 61 k-d(10)-kdkee 388 529449 81
eek-d(10)-keke 389 529728 75 ke-d(10)-keke 390 529748 80
ek-d(10)-keke 390 529768 68 ke-d(10)-kdke 390 529788 74
ek-d(10)-kdke 390 529857 67 kde-d(10)-kdke 389 529877 77
edk-d(10)-kdke 389 529897 26 k-(d4)-k-(d4)-k-(d4)-ke 389 529200 78
eek-d(10)-keke 391 529237 84 eek-d(10)-kkke 391 529564 90
eek-d(10)-kke 34
529589 86 kee-d(10)-kke 34 529614 82 edk-d(10)-kke 34 529639 80
kde-d(10)-kke 34 529664 69 kddk-d(9)-kke 34 529689 71 kdde-d(9)-kke
34 529714 73 eddk-d(9)-kke 34 529917 73 eeee-d(9)-kke 34 529143 68
eee-d(10)-kkk 392 529163 50 kkk-d(10)-eee 392 529201 76
eek-d(10)-keke 393 529238 72 eek-d(10)-kkke 393 529144 57
eee-d(10)-kkk 394 529164 71 kkk-d(10)-eee 394 529450 91
eek-d(10)-keke 395 529451 85 eek-d(10)-keke 396 529266 63
eek-d(10)-keke 397 529806 52 k-d(10)-kekee 398 529825 44
k-d(10)-kdkee 398 529267 56 eek-d(10)-keke 399 529727 67
ke-d(10)-keke 400 529747 63 ek-d(10)-keke 400 529767 67
ke-d(10)-kdke 400 529787 68 ek-d(10)-kdke 400 529856 42
kde-d(10)-kdke 399 529876 36 edk-d(10)-kdke 399 529896 56
k-(d4)-k-(d4)-k-(d4)-ke 399 529546 65 eek-d(10)-kke 248 529571 80
kee-d(10)-kke 248 529596 43 edk-d(10)-kke 248 529621 38
kde-d(10)-kke 248 529646 68 kddk-d(9)-kke 248 529671 50
kdde-d(9)-kke 248 529696 53 eddk-d(9)-kke 248 529916 22
eeee-d(9)-kke 248 529547 86 eek-d(10)-kke 37 529572 75
kee-d(10)-kke 37 529597 58 edk-d(10)-kke 37 529622 58 kde-d(10)-kke
37 529647 18 kddk-d(9)-kke 37 529672 23 kdde-d(9)-kke 37 529697 28
eddk-d(9)-kke 37 529928 36 eeee-d(9)-kke 37 529452 63
eek-d(10)-keke 401 529453 73 eek-d(10)-keke 402 529454 82
eek-d(10)-keke 403 529455 84 eek-d(10)-keke 404 529202 61
eek-d(10)-keke 405 529239 59 eek-d(10)-kkke 405 529145 54
eee-d(10)-kkk 406 529165 77 kkk-d(10)-eee 406 529456 69
eek-d(10)-keke 407 529457 81 eek-d(10)-keke 408 529458 72
eek-d(10)-keke 409 529459 86 eek-d(10)-keke 410 529460 88
eek-d(10)-keke 411 529817 46 k-d(10)-kekee 412 529836 49
k-d(10)-kdkee 412 529738 51 ke-d(10)-keke 413 529758 53
ek-d(10)-keke 413 529778 39 ke-d(10)-kdke 413 529798 52
ek-d(10)-kdke 413 529867 56 kde-d(10)-kdke 414 529887 68
edk-d(10)-kdke 414 529907 28 k-(d4)-k-(d4)-k-(d4)-ke 414 529938 64
eek-d(10)-keke 414 529565 81 eek-d(10)-kke 38 529590 49
kee-d(10)-kke 38 529615 65 edk-d(10)-kke 38 529640 54 kde-d(10)-kke
38 529665 77 kddk-d(9)-kke 38 529690 77 kdde-d(9)-kke 38 529715 63
eddk-d(9)-kke 38 529927 62 eeee-d(9)-kke 38 529185 66
eek-d(10)-keke 221 529222 62 eek-d(10)-kkke 221 529808 75
k-d(10)-kekee 89 529827 67 k-d(10)-kdkee 89 529128 64 eee-d(10)-kkk
415 529148 78 kkk-d(10)-eee 415 529461 87 eek-d(10)-keke 416 529729
71 ke-d(10)-keke 415 529749 83 ek-d(10)-keke 415 529769 63
ke-d(10)-kdke 415 529789 10 ek-d(10)-kdke 415 529800 69
k-d(10)-kekee 415 529819 78 k-d(10)-kdkee 415 529858 60
kde-d(10)-kdke 416 529878 75 edk-d(10)-kdke 416 529898 34
k-(d4)-k-(d4)-k-(d4)-ke 416 529566 61 eek-d(10)-kke 39 529591 71
kee-d(10)-kke 39 529616 71 edk-d(10)-kke 39 529641 65 kde-d(10)-kke
39 529666 70 kddk-d(9)-kke 39 529691 67 kdde-d(9)-kke 39 529716 75
eddk-d(9)-kke 39 529721 71 ke-d(10)-keke 39 529741 81 ek-d(10)-keke
39 529761 66 ke-d(10)-kdke 39 529781 65 ek-d(10)-kdke 39 529801 71
k-d(10)-kekee 39 529820 74 k-d(10)-kdkee 39 529850 63
kde-d(10)-kdke 417 529870 72 edk-d(10)-kdke 417 529890 23
k-(d4)-k-(d4)-k-(d4)-ke 417 529918 54 eeee-d(9)-kke 39 529567 75
eek-d(10)-kke 262 529592 80 kee-d(10)-kke 262 529617 65
edk-d(10)-kke 262 529642 62 kde-d(10)-kke 262 529667 75
kddk-d(9)-kke 262 529692 53 kdde-d(9)-kke 262 529717 69
eddk-d(9)-kke 262 529722 74 ke-d(10)-keke 262 529742 81
ek-d(10)-keke 262 529762 66 ke-d(10)-kdke 262 529782 68
ek-d(10)-kdke 262 529851 68 kde-d(10)-kdke 418 529871 77
edk-d(10)-kdke 418 529891 36 k-(d4)-k-(d4)-k-(d4)-ke 418 529910 60
eeee-d(9)-kke 262 529568 79 eek-d(10)-kke 263 529593 70
kee-d(10)-kke 263 529618 77 edk-d(10)-kke 263 529643 72
kde-d(10)-kke 263 529668 73 kddk-d(9)-kke 263 529693 62
kdde-d(9)-kke 263 529718 69 eddk-d(9)-kke 263 529911 66
eeee-d(9)-kke 263 529462 76 eek-d(10)-keke 419 529268 18
eek-d(10)-keke 420 529187 46 eek-d(10)-keke 421 529224 48
eek-d(10)-kkke 421 529130 34 eee-d(10)-kkk 422 529150 51
kkk-d(10)-eee 422 529549 85 eek-d(10)-kke 42 529574 81
kee-d(10)-kke 42 529599 64 edk-d(10)-kke 42 529624 68 kde-d(10)-kke
42 529649 77 kddk-d(9)-kke 42 529674 65 kdde-d(9)-kke 42 529699 63
eddk-d(9)-kke 42 529931 59 eeee-d(9)-kke 42 529810 80 k-d(10)-kekee
423 529829 67 k-d(10)-kdkee 423 529269 65 eek-d(10)-keke 424 529731
66 ke-d(10)-keke 425 529751 76 ek-d(10)-keke 425 529771 73
ke-d(10)-kdke 425 529791 65 ek-d(10)-kdke 425 529860 73
kde-d(10)-kdke 424 529880 74 edk-d(10)-kdke 424 529900 62
k-(d4)-k-(d4)-k-(d4)-ke 424 529270 69 eek-d(10)-keke 480 529550 81
eek-d(10)-kke 44 529575 88 kee-d(10)-kke 44 529600 78 edk-d(10)-kke
44 529625 74 kde-d(10)-kke 44 529650 81 kddk-d(9)-kke 44 529675 76
kdde-d(9)-kke 44 529700 73 eddk-d(9)-kke 44 529920 67 eeee-d(9)-kke
44 529271 43 eek-d(10)-keke 427 529272 0 eek-d(10)-keke 428 529273
62 eek-d(10)-keke 429 529274 78 eek-d(10)-keke 430 529275 70
eek-d(10)-keke 431 529276 73 eek-d(10)-keke 432 529277 71
eek-d(10)-keke 433 529278 72 eek-d(10)-keke 434 529279 10
eek-d(10)-keke 435 529280 11 eek-d(10)-keke 436 529281 82
eek-d(10)-keke 437 529282 87 eek-d(10)-keke 438 529803 71
k-d(10)-kekee 250 529822 72 k-d(10)-kdkee 250 529724 76
ke-d(10)-keke 439 529744 81 ek-d(10)-keke 439 529764 65
ke-d(10)-kdke 439 529784 68 ek-d(10)-kdke 439 529853 64
kde-d(10)-kdke 440 529873 69 edk-d(10)-kdke 440 529893 45
k-(d4)-k-(d4)-k-(d4)-ke 440 529937 81 eek-d(10)-keke 440 529551 88
eek-d(10)-kke 48 529576 71 kee-d(10)-kke 48 529601 74 edk-d(10)-kke
48 529626 72 kde-d(10)-kke 48 529651 85 kddk-d(9)-kke 48 529676 67
kdde-d(9)-kke 48 529701 82 eddk-d(9)-kke 48 529913 76 eeee-d(9)-kke
48 529811 56 k-d(10)-kekee 441 529830 46 k-d(10)-kdkee 441 529732
63 ke-d(10)-keke 442 529752 72 ek-d(10)-keke 442 529772 61
ke-d(10)-kdke 442 529792 68 ek-d(10)-kdke 442 529861 54
kde-d(10)-kdke 443 529881 78 edk-d(10)-kdke 443 529901 29
k-(d4)-k-(d4)-k-(d4)-ke 443 529939 67 eek-d(10)-keke 443 529283 70
eek-d(10)-keke 444 529552 72 eek-d(10)-kke 49 529577 80
kee-d(10)-kke 49 529602 64 edk-d(10)-kke 49 529627 56 kde-d(10)-kke
49 529652 57 kddk-d(9)-kke 49 529677 43 kdde-d(9)-kke 49 529702 54
eddk-d(9)-kke 49 529921 42 eeee-d(9)-kke 49 529284 76
eek-d(10)-keke 445 529285 77 eek-d(10)-keke 446 529286 68
eek-d(10)-keke 447 529287 65 eek-d(10)-keke 448 529719 73
ke-d(10)-keke 264 529739 83 ek-d(10)-keke 264 529759 63
ke-d(10)-kdke 264 529779 70 ek-d(10)-kdke 244 529848 60
kde-d(10)-kdke 449 529868 63 edk-d(10)-kdke 449 529888 53
k-(d4)-k-(d4)-k-(d4)-ke 449 529553 81 eek-d(10)-kke 265 529578 65
kee-d(10)-kke 265 529603 60 edk-d(10)-kke 265 529628 59
kde-d(10)-kke 265 529653 76 kddk-d(9)-kke 265 529678 56
kdde-d(9)-kke 265 529703 68 eddk-d(9)-kke 265 529908 69
eeee-d(9)-kke 265 529168 64 eek-d(10)-keke 450 529205 62
eek-d(10)-kkke 450 529290 53 eek-d(10)-keke 451 529802 57
k-d(10)-kekee 452 529821 61 k-d(10)-kdkee 452 529292 74
eek-d(10)-keke 453 529723 68 ke-d(10)-keke 454 529743 84
ek-d(10)-keke 454 529763 64 ke-d(10)-kdke 454 529783 72
ek-d(10)-kdke 454 529852 66 kde-d(10)-kdke 453 529872 62
edk-d(10)-kdke 453 529892 43 k-(d4)-k-(d4)-k-(d4)-ke 453 529554 80
eek-d(10)-kke 252 529579 83 kee-d(10)-kke 252 529604 73
edk-d(10)-kke 252 529629 64 kde-d(10)-kke 252 529654 69
kddk-d(9)-kke 252 529679 52 kdde-d(9)-kke 252 529704 63
eddk-d(9)-kke 252 529912 64 eeee-d(9)-kke 252
529294 74 eek-d(10)-keke 455 529296 52 eek-d(10)-keke 456 529298 60
eek-d(10)-keke 457 529300 71 eek-d(10)-keke 458 529188 79
eek-d(10)-keke 459 529225 78 eek-d(10)-kkke 459 529131 58
eee-d(10)-kkk 460 529151 71 kkk-d(10)-eee 460 529302 74
eek-d(10)-keke 461 529189 64 eek-d(10)-keke 222 529226 50
eek-d(10)-kkke 222 529132 78 eee-d(10)-kkk 462 529152 62
kkk-d(10)-eee 462 529190 76 eek-d(10)-keke 223 529227 88
eek-d(10)-kkke 250 529133 81 eee-d(10)-kkk 463 529153 68
kkk-d(10)-eee 463 529191 78 eek-d(10)-keke 224 529228 85
eek-d(10)-kkke 224 529134 75 eee-d(10)-kkk 464 529154 61
kkk-d(10)-eee 464 529304 89 eek-d(10)-keke 465 529306 84
eek-d(10)-keke 466 529308 68 eek-d(10)-keke 467 529310 59
eek-d(10)-keke 468 529169 79 eek-d(10)-keke 469 529206 82
eek-d(10)-kkke 469 529312 68 eek-d(10)-keke 470 529314 61
eek-d(10)-keke 471 529316 62 eek-d(10)-keke 472 529555 78
eek-d(10)-kke 59 529580 73 kee-d(10)-kke 59 529605 71 edk-d(10)-kke
59 529630 64 kde-d(10)-kke 59 529655 63 kddk-d(9)-kke 59 529680 43
kdde-d(9)-kke 59 529705 63 eddk-d(9)-kke 59 529932 60 eeee-d(9)-kke
59 529318 82 eek-d(10)-keke 473 529170 85 eek-d(10)-keke 474 529207
88 eek-d(10)-kkke 474 529171 81 eek-d(10)-keke 475 529208 84
eek-d(10)-kkke 475 529805 40 k-d(10)-kekee 476 529824 32
k-d(10)-kdkee 476 529320 74 eek-d(10)-keke 477 529726 80
ke-d(10)-keke 478 529746 82 ek-d(10)-keke 478 529766 63
ke-d(10)-kdke 478 529786 69 ek-d(10)-kdke 478 529855 39
kde-d(10)-kdke 477 529875 40 edk-d(10)-kdke 477 529895 27
k-(d4)-k-(d4)-k-(d4)-ke 477 529556 72 eek-d(10)-kke 61 529581 68
kee-d(10)-kke 61 529606 54 edk-d(10)-kke 61 529631 29 kde-d(10)-kke
61 529656 74 kddk-d(9)-kke 61 529681 32 kdde-d(9)-kke 61 529706 41
eddk-d(9)-kke 61 529915 51 eeee-d(9)-kke 61 529172 88
eek-d(10)-keke 226 529209 87 eek-d(10)-kkke 226 529173 92
eek-d(10)-keke 227 529210 89 eek-d(10)-kkke 227 529183 85
eek-d(10)-keke 479 529220 92 eek-d(10)-kkke 479 529126 83
eee-d(10)-kkk 257 529146 84 kkk-d(10)-eee 257 529174 85
eek-d(10)-keke 480 529211 86 eek-d(10)-kkke 480 529322 71
eek-d(10)-keke 481 529324 79 eek-d(10)-keke 482 529326 85
eek-d(10)-keke 483 529175 92 eek-d(10)-keke 228 529212 92
eek-d(10)-kkke 228 529176 89 eek-d(10)-keke 229 529213 90
eek-d(10)-kkke 229 529804 89 k-d(10)-kekee 259 529823 89
k-d(10)-kdkee 259 529166 83 eek-d(10)-keke 230 529203 86
eek-d(10)-kkke 230 529725 92 ke-d(10)-keke 260 529745 91
ek-d(10)-keke 260 529765 88 ke-d(10)-kdke 260 529785 91
ek-d(10)-kdke 260 529799 89 k-d(10)-kekee 260 529818 88
k-d(10)-kdkee 260 529854 90 kde-d(10)-kdke 230 529874 81
edk-d(10)-kdke 230 529894 60 k-(d4)-k-(d4)-k-(d4)-ke 230 529167 71
eek-d(10)-keke 231 529204 70 eek-d(10)-kkke 231 529557 86
eek-d(10)-kke 69 529582 86 kee-d(10)-kke 69 529607 84 edk-d(10)-kke
69 529632 81 kde-d(10)-kke 69 529657 85 kddk-d(9)-kke 69 529682 78
kdde-d(9)-kke 69 529707 79 eddk-d(9)-kke 69 529720 75 ke-d(10)-keke
69 529740 70 ek-d(10)-keke 69 529760 78 ke-d(10)-kdke 69 529780 83
ek-d(10)-kdke 69 529849 80 kde-d(10)-kdke 231 529869 72
edk-d(10)-kdke 231 529889 49 k-(d4)-k-(d4)-k-(d4)-ke 231 529914 69
eeee-d(9)-kke 69 529328 68 eek-d(10)-keke 484 529558 71
eek-d(10)-kke 71 529583 81 kee-d(10)-kke 71 529608 68 edk-d(10)-kke
71 529633 73 kde-d(10)-kke 71 529658 63 kddk-d(9)-kke 71 529683 74
kdde-d(9)-kke 71 529708 70 eddk-d(9)-kke 71 529909 59 eeee-d(9)-kke
71 529192 51 eek-d(10)-keke 485 529229 69 eek-d(10)-kkke 485 529135
54 eee-d(10)-kkk 486 529155 56 kkk-d(10)-eee 486 529330 37
eek-d(10)-keke 487 e = 2' -MOE, k = cEt, d =
2'-deoxyribonucleoside
Example 20
Design of Modified Oligonucleotides Comprising 2'-O-Methoxyethyl
(2'-MOE) or 6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt)
Modifications
[0756] Based on the activity of the antisense oligonucleotides
listed above, additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid targeting start positions 1147,
1154 or 12842 of Target-X.
[0757] The newly designed chimeric antisense oligonucleotides are
16 or 17 nucleotides in length and their motifs are described in
Table 35. The chemistry column of Table 35 presents the sugar motif
of each oligonucleotide, wherein "e" indicates a 2'-O-methoxyethyl
(2'-MOE) nucleoside, "k" indicates a 6'-(S)--CH.sub.3 bicyclic
nucleoside (e.g cEt) and "d" indicates a 2'-deoxyribonucleoside.
The internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine residues
throughout each oligonucleotide are 5-methylcytosine.
[0758] Each gapmer listed in Table 35 is targeted to the human
Target-X genomic sequence.
TABLE-US-00036 TABLE 35 Chimeric antisense oligonucleotides
targeted to Target-X ISIS No Chemistry SEQ CODE 529544
eek-d(10)-kke 21 529569 kee-d(10)-kke 21 529594 edk-d(10)-kke 21
529619 kde-d(10)-kke 21 529644 kddk-d(9)-kke 21 529669
kdde-d(9)-kke 21 529694 eddk-d(9)-kke 21 529929 eeee-d(9)-kke 21
529809 k-d(10)-kekee 488 529828 k-d(10)-kdkee 488 529730
ke-d(10)-keke 489 529750 ek-d(10)-keke 489 529770 ke-d(10)-kdke 489
529790 ek-d(10)-kdke 489 529859 kde-d(10)-kdke 490 529879
edk-d(10)-kdke 490 529899 k-d(4)-k-d(4)-k-d(4)-ke 490 529545
eek-d(10)-kke 22 529570 kee-d(10)-kke 22 529595 edk-d(10)-kke 22
529620 kde-d(10)-kke 22 529645 kddk-d(9)-kke 22 529670
kdde-d(9)-kke 22 529695 eddk-d(9)-kke 22 529919 eeee-d(9)-kke 22
529548 eek-d(10)-kke 41 529573 kee-d(10)-kke 41 529598
edk-d(10)-kke 41 529623 kde-d(10)-kke 41 529648 kddk-d(9)-kke 41
529673 kdde-d(9)-kke 41 529698 eddk-d(9)-kke 41 529930
eeee-d(9)-kke 41 e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
Example 21
Modified Oligonucleotides Comprising 2'-O-Methoxyethyl (2'-MOE) and
6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt) Modifications
Targeting Human Target-X
[0759] Additional antisense oligonucleotides were designed
targeting a Target-X nucleic acid and were tested for their effects
on Target-X mRNA in vitro. ISIS 472998 and ISIS 515554, described
in the Examples above were also included in the screen.
[0760] The newly designed chimeric antisense oligonucleotides are
16 nucleotides in length and their motifs are described in Table
36. The chemistry column of Table 36 presents the sugar motif of
each oligonucleotide, wherein "e" indicates a 2'-O-methoxyethyl
(2'-MOE) nucleoside, "k" indicates a 6'-(S)--CH.sub.3 bicyclic
nucleoside (e.g cEt) and "d" indicates a 2'-deoxyribonucleoside.
The internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine residues
throughout each oligonucleotide are 5-methylcytosine.
[0761] Each gapmer listed in Table 36 is targeted to the human
Target-X genomic sequence.
[0762] Cultured Hep3B cells at a density of 20,000 cells per well
were transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
RTS2927 was used to measure mRNA levels. Target-X mRNA levels were
adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells.
TABLE-US-00037 TABLE 36 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X ISIS No %
inhibition Chemistry SEQ CODE 472998 88 kk-d(10)-kk 74 515554 75
eee-d(10)-kkk 493 534530 92 keke-d(9)-kek 491 534563 92
kek-d(9)-ekek 491 534596 88 ekee-d(9)-kke 491 534629 89
eke-d(9)-ekke 491 534662 87 eekk-d(9)-eke 491 534695 92
eek-d(9)-keke 491 534732 90 ekek-d(8)-keke 491 534767 92
keek-d(8)-keek 491 534802 93 ekk-d(10)-kke 491 534832 83
edk-d(10)-kke 491 534862 72 kde-d(10)-kke 491 534892 82
eek-d(10)-kke 491 534922 80 kddk-d(9)-kke 491 534952 72
kdde-d(9)-kke 491 534982 77 eddk-d(9)-kke 491 535012 70
eeee-d(9)-kke 491 535045 84 eeee-d(9)-kkk 491 535078 87
eeek-d(9)-kke 491 535111 63 eeeee-d(8)-kke 491 535144 69
ededk-d(8)-kke 491 535177 68 edkde-d(8)-kke 491 534531 61
keke-d(9)-kek 492 534564 30 kek-d(9)-ekek 492 534597 67
ekee-d(9)-kke 492 534630 54 eke-d(9)-ekke 492 534663 94
eekk-d(9)-eke 492 534696 68 eek-d(9)-keke 492 534733 44
ekek-d(8)-keke 492 534768 55 keek-d(8)-keek 492 534803 73
ekk-d(10)-kke 492 534833 65 edk-d(10)-kke 492 534863 53
kde-d(10)-kke 492 534893 61 eek-d(10)-kke 492 534923 70
kddk-d(9)-kke 492 534953 54 kdde-d(9)-kke 492 534983 58
eddk-d(9)-kke 492 535013 52 eeee-d(9)-kke 492 535046 67
eeee-d(9)-kkk 492 535079 57 eeek-d(9)-kke 492 535112 42
eeeee-d(8)-kke 492 535145 41 ededk-d(8)-kke 492 535178 35
edkde-d(8)-kke 492 534565 87 kek-d(9)-ekek 493 534598 72
ekee-d(9)-kke 493 534631 70 eke-d(9)-ekke 493 534664 94
eekk-d(9)-eke 493 534697 90 eek-d(9)-keke 493 534734 74
ekek-d(8)-keke 493 534769 80 keek-d(8)-keek 493 534804 87
ekk-d(10)-kke 493 534834 76 edk-d(10)-kke 493 534864 56
kde-d(10)-kke 493 534894 67 eek-d(10)-kke 493 534924 71
kddk-d(9)-kke 493 534954 54 kdde-d(9)-kke 493 534984 48
eddk-d(9)-kke 493 535014 43 eeee-d(9)-kke 493 535047 60
eeee-d(9)-kkk 493 535080 64 eeek-d(9)-kke 493 535113 32
eeeee-d(8)-kke 493 535146 31 ededk-d(8)-kke 493 535179 28
edkde-d(8)-kke 493 534533 82 keke-d(9)-kek 494 534566 88
kek-d(9)-ekek 494 534599 65 ekee-d(9)-kke 494 534632 69
eke-d(9)-ekke 494 534665 87 eekk-d(9)-eke 494 534698 64
eek-d(9)-keke 494 534735 63 ekek-d(8)-keke 494 534770 66
keek-d(8)-keek 494 534805 87 ekk-d(10)-kke 494 534835 68
edk-d(10)-kke 494 534865 66 kde-d(10)-kke 494 534895 57
eek-d(10)-kke 494 534925 82 kddk-d(9)-kke 494 534955 76
kdde-d(9)-kke 494 534985 71 eddk-d(9)-kke 494 535015 59
eeee-d(9)-kke 494 535048 69 eeee-d(9)-kkk 494 535081 67
eeek-d(9)-kke 494 535114 37 eeeee-d(8)-kke 494 535147 32
ededk-d(8)-kke 494 535180 31 edkde-d(8)-kke 494 534534 94
keke-d(9)-kek 234 534567 92 kek-d(9)-ekek 234 534600 92
ekee-d(9)-kke 234 534633 91 eke-d(9)-ekke 234 534666 89
eekk-d(9)-eke 234 534699 91 eek-d(9)-keke 234 534736 83
ekek-d(8)-keke 234 534771 80 keek-d(8)-keek 234 534806 96
ekk-d(10)-kke 234 534836 86 edk-d(10)-kke 234 534866 82
kde-d(10)-kke 234 534896 82 eek-d(10)-kke 234 534926 89
kddk-d(9)-kke 234 534956 91 kdde-d(9)-kke 234 534986 87
eddk-d(9)-kke 234 535016 83 eeee-d(9)-kke 234 535049 87
eeee-d(9)-kkk 234 535082 87 eeek-d(9)-kke 234 535115 77
eeeee-d(8)-kke 234 535148 73 ededk-d(8)-kke 234 535181 68
edkde-d(8)-kke 234 534535 66 keke-d(9)-kek 236 534568 85
kek-d(9)-ekek 236 534601 51 ekee-d(9)-kke 236 534634 80
eke-d(9)-ekke 236 534667 90 eekk-d(9)-eke 236 534700 88
eek-d(9)-keke 236 534737 65 ekek-d(8)-keke 236 534772 77
keek-d(8)-keek 236 534807 84 ekk-d(10)-kke 236 534837 78
edk-d(10)-kke 236 534867 44 kde-d(10)-kke 236 534897 82
eek-d(10)-kke 236 534927 61 kddk-d(9)-kke 236 534957 58
kdde-d(9)-kke 236 534987 49 eddk-d(9)-kke 236 535017 38
eeee-d(9)-kke 236 535050 32 eeee-d(9)-kkk 236 535083 43
eeek-d(9)-kke 236 535116 9 eeeee-d(8)-kke 236 535149 23
ededk-d(8)-kke 236 535182 18 edkde-d(8)-kke 236 534536 89
keke-d(9)-kek 238 534569 90 kek-d(9)-ekek 238 534602 85
ekee-d(9)-kke 238 534635 87 eke-d(9)-ekke 238 534668 90
eekk-d(9)-eke 238 534701 92 eek-d(9)-keke 238 534738 81
ekek-d(8)-keke 238 534773 79 keek-d(8)-keek 238 534808 90
ekk-d(10)-kke 238 534838 88 edk-d(10)-kke 238 534868 67
kde-d(10)-kke 238 534898 89 eek-d(10)-kke 238 534928 81
kddk-d(9)-kke 238 534958 78 kdde-d(9)-kke 238 534988 66
eddk-d(9)-kke 238 535018 78 eeee-d(9)-kke 238 535051 76
eeee-d(9)-kkk 238 535084 80 eeek-d(9)-kke 238 535117 58
eeeee-d(8)-kke 238 535150 51 ededk-d(8)-kke 238 535183 53
edkde-d(8)-kke 238 534537 91 keke-d(9)-kek 239 534570 85
kek-d(9)-ekek 239 534603 79 ekee-d(9)-kke 239 534636 72
eke-d(9)-ekke 239 534669 85 eekk-d(9)-eke 239 534702 85
eek-d(9)-keke 239 534739 73 ekek-d(8)-keke 239 534774 77
keek-d(8)-keek 239 534809 91 ekk-d(10)-kke 239 534839 86
edk-d(10)-kke 239 534869 71 kde-d(10)-kke 239 534899 82
eek-d(10)-kke 239 534929 83 kddk-d(9)-kke 239 534959 80
kdde-d(9)-kke 239 534989 79 eddk-d(9)-kke 239 535019 76
eeee-d(9)-kke 239 535052 79 eeee-d(9)-kkk 239 535085 81
eeek-d(9)-kke 239 535118 58 eeeee-d(8)-kke 239 535151 65
ededk-d(8)-kke 239 535184 60 edkde-d(8)-kke 239 534516 77
keke-d(9)-kek 495 534549 80 kek-d(9)-ekek 495 534582 73
ekee-d(9)-kke 495 534615 79 eke-d(9)-ekke 495 534648 67
eekk-d(9)-eke 495 534681 87 eek-d(9)-keke 495 534718 46
ekek-d(8)-keke 495 534753 68 keek-d(8)-keek 495 534788 84
ekk-d(10)-kke 495 534818 82 edk-d(10)-kke 495 534848 75
kde-d(10)-kke 495 534878 72 eek-d(10)-kke 495 534908 81
kddk-d(9)-kke 495 534938 69 kdde-d(9)-kke 495 534968 77
eddk-d(9)-kke 495 534998 76 eeee-d(9)-kke 495 535031 76
eeee-d(9)-kkk 495 535064 70 eeek-d(9)-kke 495 535097 57
eeeee-d(8)-kke 495 535130 69 ededk-d(8)-kke 495 535163 58
edkde-d(8)-kke 495 534538 71 keke-d(9)-kek 241 534571 64
kek-d(9)-ekek 241 534604 66 ekee-d(9)-kke 241 534637 74
eke-d(9)-ekke 241 534670 87 eekk-d(9)-eke 241 534703 72
eek-d(9)-keke 241 534740 56 ekek-d(8)-keke 241 534775 53
keek-d(8)-keek 241 534810 78 ekk-d(10)-kke 241 534840 73
edk-d(10)-kke 241 534870 65 kde-d(10)-kke 241 534900 69
eek-d(10)-kke 241 534930 67 kddk-d(9)-kke 241 534960 62
kdde-d(9)-kke 241 534990 66 eddk-d(9)-kke 241 535020 61
eeee-d(9)-kke 241 535053 47 eeee-d(9)-kkk 241 535086 61
eeek-d(9)-kke 241 535119 49 eeeee-d(8)-kke 241 535152 48
ededk-d(8)-kke 241 535185 57 edkde-d(8)-kke 241 534539 70
keke-d(9)-kek 496 534572 82 kek-d(9)-ekek 496 534605 59
ekee-d(9)-kke 496 534638 69 eke-d(9)-ekke 496 534671 89
eekk-d(9)-eke 496 534704 83 eek-d(9)-keke 496 534741 47
ekek-d(8)-keke 496 534776 46 keek-d(8)-keek 496 534811 71
ekk-d(10)-kke 496 534841 61 edk-d(10)-kke 496 534871 53
kde-d(10)-kke 496 534901 55 eek-d(10)-kke 496 534931 73
kddk-d(9)-kke 496 534961 53 kdde-d(9)-kke 496 534991 56
eddk-d(9)-kke 496 535021 58 eeee-d(9)-kke 496 535054 59
eeee-d(9)-kkk 496 535087 0 eeek-d(9)-kke 496 535120 41
eeeee-d(8)-kke 496 535153 44 ededk-d(8)-kke 496 535186 35
edkde-d(8)-kke 496 534573 76 kek-d(9)-ekek 497 534606 55
ekee-d(9)-kke 497 534639 72 eke-d(9)-ekke 497 534672 89
eekk-d(9)-eke 497 534705 87 eek-d(9)-keke 497 534742 84
ekek-d(8)-keke 497 534777 79 keek-d(8)-keek 497 534812 76
ekk-d(10)-kke 497 534842 74 edk-d(10)-kke 497 534872 53
kde-d(10)-kke 497 534902 70 eek-d(10)-kke 497 534932 73
kddk-d(9)-kke 497
534962 60 kdde-d(9)-kke 497 534992 61 eddk-d(9)-kke 497 535022 38
eeee-d(9)-kke 497 535055 42 eeee-d(9)-kkk 497 535088 56
eeek-d(9)-kke 497 535121 5 eeeee-d(8)-kke 497 535154 22
ededk-d(8)-kke 497 535187 16 edkde-d(8)-kke 497 534541 86
keke-d(9)-kek 498 534574 89 kek-d(9)-ekek 498 534607 59
ekee-d(9)-kke 498 534640 76 eke-d(9)-ekke 498 534673 89
eekk-d(9)-eke 498 534706 86 eek-d(9)-keke 498 534743 79
ekek-d(8)-keke 498 534778 80 keek-d(8)-keek 498 534813 83
ekk-d(10)-kke 498 534843 82 edk-d(10)-kke 498 534873 83
kde-d(10)-kke 498 534903 78 eek-d(10)-kke 498 534933 83
kddk-d(9)-kke 498 534963 70 kdde-d(9)-kke 498 534993 78
eddk-d(9)-kke 498 535023 56 eeee-d(9)-kke 498 535056 59
eeee-d(9)-kkk 498 535089 73 eeek-d(9)-kke 498 535122 39
eeeee-d(8)-kke 498 535155 60 ededk-d(8)-kke 498 535188 41
edkde-d(8)-kke 498 534542 75 keke-d(9)-kek 499 534575 82
kek-d(9)-ekek 499 534608 72 ekee-d(9)-kke 499 534641 69
eke-d(9)-ekke 499 534674 84 eekk-d(9)-eke 499 534707 78
eek-d(9)-keke 499 534744 72 ekek-d(8)-keke 499 534779 75
keek-d(8)-keek 499 534814 81 ekk-d(10)-kke 499 534844 75
edk-d(10)-kke 499 534874 70 kde-d(10)-kke 499 534904 71
eek-d(10)-kke 499 534934 73 kddk-d(9)-kke 499 534964 72
kdde-d(9)-kke 499 534994 69 eddk-d(9)-kke 499 535024 56
eeee-d(9)-kke 499 535057 63 eeee-d(9)-kkk 499 535090 64
eeek-d(9)-kke 499 535123 40 eeeee-d(8)-kke 499 535156 47
ededk-d(8)-kke 499 535189 48 edkde-d(8)-kke 499 534515 52
keke-d(9)-kek 34 534548 85 kek-d(9)-ekek 34 534581 75 ekee-d(9)-kke
34 534614 83 eke-d(9)-ekke 34 534647 65 eekk-d(9)-eke 34 534680 88
eek-d(9)-keke 34 534717 76 ekek-d(8)-keke 34 534752 79
keek-d(8)-keek 34 534787 90 ekk-d(10)-kke 34 535030 77
eeee-d(9)-kkk 34 535063 75 eeek-d(9)-kke 34 535096 54
eeeee-d(8)-kke 34 535129 66 ededk-d(8)-kke 34 535162 49
edkde-d(8)-kke 34 534543 66 keke-d(9)-kek 500 534576 69
kek-d(9)-ekek 500 534609 77 ekee-d(9)-kke 500 534642 62
eke-d(9)-ekke 500 534675 80 eekk-d(9)-eke 500 534708 81
eek-d(9)-keke 500 534745 68 ekek-d(8)-keke 500 534780 69
keek-d(8)-keek 500 534815 85 ekk-d(10)-kke 500 534845 72
edk-d(10)-kke 500 534875 56 kde-d(10)-kke 500 534905 65
eek-d(10)-kke 500 534935 78 kddk-d(9)-kke 500 534965 48
kdde-d(9)-kke 500 534995 62 eddk-d(9)-kke 500 535025 58
eeee-d(9)-kke 500 535058 60 eeee-d(9)-kkk 500 535091 61
eeek-d(9)-kke 500 535124 51 eeeee-d(8)-kke 500 535157 55
ededk-d(8)-kke 500 535190 47 edkde-d(8)-kke 500 534517 71
keke-d(9)-kek 501 534550 80 kek-d(9)-ekek 501 534583 70
ekee-d(9)-kke 501 534616 84 eke-d(9)-ekke 501 534649 68
eekk-d(9)-eke 501 534682 87 eek-d(9)-keke 501 534719 90
ekek-d(8)-keke 501 534754 83 keek-d(8)-keek 501 534789 86
ekk-d(10)-kke 501 534819 69 edk-d(10)-kke 501 534849 62
kde-d(10)-kke 501 534879 69 eek-d(10)-kke 501 534909 73
kddk-d(9)-kke 501 534939 49 kdde-d(9)-kke 501 534969 47
eddk-d(9)-kke 501 534999 51 eeee-d(9)-kke 501 535032 51
eeee-d(9)-kkk 501 535065 64 eeek-d(9)-kke 501 535098 31
eeeee-d(8)-kke 501 535131 31 ededk-d(8)-kke 501 535164 40
edkde-d(8)-kke 501 534518 81 keke-d(9)-kek 502 534551 88
kek-d(9)-ekek 502 534584 78 ekee-d(9)-kke 502 534617 80
eke-d(9)-ekke 502 534650 83 eekk-d(9)-eke 502 534683 93
eek-d(9)-keke 502 534720 87 ekek-d(8)-keke 502 534755 82
keek-d(8)-keek 502 534790 89 ekk-d(10)-kke 502 534820 64
edk-d(10)-kke 502 534850 38 kde-d(10)-kke 502 534880 68
eek-d(10)-kke 502 534910 60 kddk-d(9)-kke 502 534940 37
kdde-d(9)-kke 502 534970 59 eddk-d(9)-kke 502 535000 30
eeee-d(9)-kke 502 535033 44 eeee-d(9)-kkk 502 535066 64
eeek-d(9)-kke 502 535099 22 eeeee-d(8)-kke 502 535132 54
ededk-d(8)-kke 502 535165 45 edkde-d(8)-kke 502 534544 80
keke-d(9)-kek 503 534577 83 kek-d(9)-ekek 503 534610 62
ekee-d(9)-kke 503 534643 66 eke-d(9)-ekke 503 534676 95
eekk-d(9)-eke 503 534709 86 eek-d(9)-keke 503 534746 73
ekek-d(8)-keke 503 534781 71 keek-d(8)-keek 503 534816 83
ekk-d(10)-kke 503 534846 73 edk-d(10)-kke 503 534876 39
kde-d(10)-kke 503 534906 67 eek-d(10)-kke 503 534936 66
kddk-d(9)-kke 503 534966 48 kdde-d(9)-kke 503 534996 56
eddk-d(9)-kke 503 535026 39 eeee-d(9)-kke 503 535059 45
eeee-d(9)-kkk 503 535092 48 eeek-d(9)-kke 503 535125 26
eeeee-d(8)-kke 503 535158 44 ededk-d(8)-kke 503 535191 34
edkde-d(8)-kke 503 534545 83 keke-d(9)-kek 504 534578 81
kek-d(9)-ekek 504 534611 78 ekee-d(9)-kke 504 534644 72
eke-d(9)-ekke 504 534677 92 eekk-d(9)-eke 504 534710 78
eek-d(9)-keke 504 534747 85 ekek-d(8)-keke 504 534782 85
keek-d(8)-keek 504 534817 88 ekk-d(10)-kke 504 534847 73
edk-d(10)-kke 504 534877 66 kde-d(10)-kke 504 534907 73
eek-d(10)-kke 504 534937 85 kddk-d(9)-kke 504 534967 80
kdde-d(9)-kke 504 534997 74 eddk-d(9)-kke 504 535027 64
eeee-d(9)-kke 504 535060 68 eeee-d(9)-kkk 504 535093 73
eeek-d(9)-kke 504 535126 42 eeeee-d(8)-kke 504 535159 49
ededk-d(8)-kke 504 535192 51 edkde-d(8)-kke 504 534519 87
keke-d(9)-kek 505 534552 85 kek-d(9)-ekek 505 534585 76
ekee-d(9)-kke 505 534618 78 eke-d(9)-ekke 505 534651 79
eekk-d(9)-eke 505 534684 87 eek-d(9)-keke 505 534721 89
ekek-d(8)-keke 505 534756 90 keek-d(8)-keek 505 534791 84
ekk-d(10)-kke 505 534821 79 edk-d(10)-kke 505 534851 64
kde-d(10)-kke 505 534881 65 eek-d(10)-kke 505 534911 85
kddk-d(9)-kke 505 534941 66 kdde-d(9)-kke 505 534971 75
eddk-d(9)-kke 505 535001 62 eeee-d(9)-kke 505 535034 65
eeee-d(9)-kkk 505 535067 76 eeek-d(9)-kke 505 535100 5
eeeee-d(8)-kke 505 535133 30 ededk-d(8)-kke 505 535166 23
edkde-d(8)-kke 505 534520 87 keke-d(9)-kek 251 534553 79
kek-d(9)-ekek 251 534586 60 ekee-d(9)-kke 251 534619 62
eke-d(9)-ekke 251 534652 84 eekk-d(9)-eke 251 534685 84
eek-d(9)-keke 251 534722 75 ekek-d(8)-keke 251 534757 81
keek-d(8)-keek 251 534792 87 ekk-d(10)-kke 251 534822 80
edk-d(10)-kke 251 534852 38 kde-d(10)-kke 251 534882 75
eek-d(10)-kke 251 534912 74 kddk-d(9)-kke 251 534942 58
kdde-d(9)-kke 251 534972 59 eddk-d(9)-kke 251 535002 50
eeee-d(9)-kke 251 535035 57 eeee-d(9)-kkk 251 535068 67
eeek-d(9)-kke 251 535101 24 eeeee-d(8)-kke 251 535134 23
ededk-d(8)-kke 251 535167 26 edkde-d(8)-kke 251 534513 90
keke-d(9)-kek 252 534546 92 kek-d(9)-ekek 252 534579 78
ekee-d(9)-kke 252 534612 82 eke-d(9)-ekke 252 534645 73
eekk-d(9)-eke 252 534678 91 eek-d(9)-keke 252 534715 87
ekek-d(8)-keke 252 534750 88 keek-d(8)-keek 252 534785 89
ekk-d(10)-kke 252 535028 52 eeee-d(9)-kkk 252 535061 73
eeek-d(9)-kke 252 535094 61 eeeee-d(8)-kke 252 535127 59
ededk-d(8)-kke 252 535160 62 edkde-d(8)-kke 252 534521 86
keke-d(9)-kek 506 534554 87 kek-d(9)-ekek 506 534587 62
ekee-d(9)-kke 506 534620 68 eke-d(9)-ekke 506 534653 77
eekk-d(9)-eke 506 534686 90 eek-d(9)-keke 506 534723 88
ekek-d(8)-keke 506 534758 79 keek-d(8)-keek 506 534793 85
ekk-d(10)-kke 506 534823 81 edk-d(10)-kke 506 534853 59
kde-d(10)-kke 506 534883 69 eek-d(10)-kke 506 534913 76
kddk-d(9)-kke 506 534943 53 kdde-d(9)-kke 506 534973 61
eddk-d(9)-kke 506 535003 53 eeee-d(9)-kke 506 535036 35
eeee-d(9)-kkk 506 535069 62 eeek-d(9)-kke 506 535102 31
eeeee-d(8)-kke 506 535135 44 ededk-d(8)-kke 506 535168 34
edkde-d(8)-kke 506 534522 83 keke-d(9)-kek 507 534555 81
kek-d(9)-ekek 507 534588 72 ekee-d(9)-kke 507 534621 74
eke-d(9)-ekke 507 534654 78 eekk-d(9)-eke 507
534687 91 eek-d(9)-keke 507 534724 84 ekek-d(8)-keke 507 534759 86
keek-d(8)-keek 507 534794 78 ekk-d(10)-kke 507 534824 75
edk-d(10)-kke 507 534854 63 kde-d(10)-kke 507 534884 60
eek-d(10)-kke 507 534914 75 kddk-d(9)-kke 507 534944 69
kdde-d(9)-kke 507 534974 66 eddk-d(9)-kke 507 535004 56
eeee-d(9)-kke 507 535037 50 eeee-d(9)-kkk 507 535070 68
eeek-d(9)-kke 507 535103 55 eeeee-d(8)-kke 507 535136 51
ededk-d(8)-kke 507 535169 54 edkde-d(8)-kke 507 534523 89
keke-d(9)-kek 253 534556 91 kek-d(9)-ekek 253 534589 88
ekee-d(9)-kke 253 534622 93 eke-d(9)-ekke 253 534655 72
eekk-d(9)-eke 253 534688 92 eek-d(9)-keke 253 534725 87
ekek-d(8)-keke 253 534760 92 keek-d(8)-keek 253 534795 93
ekk-d(10)-kke 253 534825 82 edk-d(10)-kke 253 534855 73
kde-d(10)-kke 253 534885 82 eek-d(10)-kke 253 534915 88
kddk-d(9)-kke 253 534945 82 kdde-d(9)-kke 253 534975 68
eddk-d(9)-kke 253 535005 69 eeee-d(9)-kke 253 535038 72
eeee-d(9)-kkk 253 535071 74 eeek-d(9)-kke 253 535104 61
eeeee-d(8)-kke 253 535137 67 ededk-d(8)-kke 253 535170 51
edkde-d(8)-kke 253 534524 95 keke-d(9)-kek 254 534557 98
kek-d(9)-ekek 254 534590 91 ekee-d(9)-kke 254 534623 91
eke-d(9)-ekke 254 534656 90 eekk-d(9)-eke 254 534689 92
eek-d(9)-keke 254 534726 57 ekek-d(8)-keke 254 534761 89
keek-d(8)-keek 254 534796 93 ekk-d(10)-kke 254 534826 89
edk-d(10)-kke 254 534856 87 kde-d(10)-kke 254 534886 85
eek-d(10)-kke 254 534916 87 kddk-d(9)-kke 254 534946 86
kdde-d(9)-kke 254 534976 77 eddk-d(9)-kke 254 535006 83
eeee-d(9)-kke 254 535039 86 eeee-d(9)-kkk 254 535072 87
eeek-d(9)-kke 254 535105 68 eeeee-d(8)-kke 254 535138 70
ededk-d(8)-kke 254 535171 65 edkde-d(8)-kke 254 534558 92
kek-d(9)-ekek 255 534591 91 ekee-d(9)-kke 255 534624 86
eke-d(9)-ekke 255 534657 90 eekk-d(9)-eke 255 534690 76
eek-d(9)-keke 255 534727 92 ekek-d(8)-keke 255 534762 91
keek-d(8)-keek 255 534797 94 ekk-d(10)-kke 255 534827 90
edk-d(10)-kke 255 534857 80 kde-d(10)-kke 255 534887 76
eek-d(10)-kke 255 534917 91 kddk-d(9)-kke 255 534947 91
kdde-d(9)-kke 255 534977 86 eddk-d(9)-kke 255 535007 80
eeee-d(9)-kke 255 535040 86 eeee-d(9)-kkk 255 535073 87
eeek-d(9)-kke 255 535106 70 eeeee-d(8)-kke 255 535139 73
ededk-d(8)-kke 255 535172 69 edkde-d(8)-kke 255 534514 90
keke-d(9)-kek 61 534547 92 kek-d(9)-ekek 61 534580 78 ekee-d(9)-kke
61 534613 80 eke-d(9)-ekke 61 534646 79 eekk-d(9)-eke 61 534679 93
eek-d(9)-keke 61 534716 94 ekek-d(8)-keke 61 534751 86
keek-d(8)-keek 61 534786 83 ekk-d(10)-kke 61 535029 45
eeee-d(9)-kkk 61 535062 81 eeek-d(9)-kke 61 535095 57
eeeee-d(8)-kke 61 535128 58 ededk-d(8)-kke 61 535161 49
edkde-d(8)-kke 61 534526 94 keke-d(9)-kek 256 534559 95
kek-d(9)-ekek 256 534592 93 ekee-d(9)-kke 256 534625 93
eke-d(9)-ekke 256 534658 93 eekk-d(9)-eke 256 534691 96
eek-d(9)-keke 256 534728 93 ekek-d(8)-keke 256 534763 93
keek-d(8)-keek 256 534798 97 ekk-d(10)-kke 256 534828 94
edk-d(10)-kke 256 534858 92 kde-d(10)-kke 256 534888 93
eek-d(10)-kke 256 534918 95 kddk-d(9)-kke 256 534948 93
kdde-d(9)-kke 256 534978 91 eddk-d(9)-kke 256 535008 88
eeee-d(9)-kke 256 535041 87 eeee-d(9)-kkk 256 535074 90
eeek-d(9)-kke 256 535107 78 eeeee-d(8)-kke 256 535140 81
ededk-d(8)-kke 256 535173 81 edkde-d(8)-kke 256 534527 95
keke-d(9)-kek 258 534560 96 kek-d(9)-ekek 258 534593 87
ekee-d(9)-kke 258 534626 85 eke-d(9)-ekke 258 534659 90
eekk-d(9)-eke 258 534692 91 eek-d(9)-keke 258 534729 91
ekek-d(8)-keke 258 534764 91 keek-d(8)-keek 258 534799 96
ekk-d(10)-kke 258 534829 91 edk-d(10)-kke 258 534859 87
kde-d(10)-kke 258 534889 81 eek-d(10)-kke 258 534919 92
kddk-d(9)-kke 258 534949 91 kdde-d(9)-kke 258 534979 84
eddk-d(9)-kke 258 535009 78 eeee-d(9)-kke 258 535042 76
eeee-d(9)-kkk 258 535075 83 eeek-d(9)-kke 258 535108 64
eeeee-d(8)-kke 258 535141 69 ededk-d(8)-kke 258 535174 65
edkde-d(8)-kke 258 534528 94 keke-d(9)-kek 260 534561 0
kek-d(9)-ekek 260 534594 92 ekee-d(9)-kke 260 534627 90
eke-d(9)-ekke 260 534660 92 eekk-d(9)-eke 260 534693 95
eek-d(9)-keke 260 534730 93 ekek-d(8)-keke 260 534765 92
keek-d(8)-keek 260 534800 93 ekk-d(10)-kke 260 534830 93
edk-d(10)-kke 260 534860 85 kde-d(10)-kke 260 534890 91
eek-d(10)-kke 260 534920 93 kddk-d(9)-kke 260 534950 90
kdde-d(9)-kke 260 534980 88 eddk-d(9)-kke 260 535010 88
eeee-d(9)-kke 260 535043 89 eeee-d(9)-kkk 260 535076 88
eeek-d(9)-kke 260 535109 76 eeeee-d(8)-kke 260 535142 86
ededk-d(8)-kke 260 535175 71 edkde-d(8)-kke 260 534529 70
keke-d(9)-kek 261 534562 86 kek-d(9)-ekek 261 534595 56
ekee-d(9)-kke 261 534628 73 eke-d(9)-ekke 261 534661 64
eekk-d(9)-eke 261 534694 75 eek-d(9)-keke 261 534731 47
ekek-d(8)-keke 261 534766 30 keek-d(8)-keek 261 534801 83
ekk-d(10)-kke 261 534831 84 edk-d(10)-kke 261 534861 71
kde-d(10)-kke 261 534891 73 eek-d(10)-kke 261 534921 55
kddk-d(9)-kke 261 534951 61 kdde-d(9)-kke 261 534981 48
eddk-d(9)-kke 261 535011 54 eeee-d(9)-kke 261 535044 46
eeee-d(9)-kkk 261 535077 29 eeek-d(9)-kke 261 535110 19
eeeee-d(8)-kke 261 535143 15 ededk-d(8)-kke 261 535176 37
edkde-d(8)-kke 261 e = 2'-MOE, k = cEt, d = 2'-deoxynucleoside
Example 22
Modified Antisense Oligonucleotides Comprising 2'-O-Methoxyethyl
(2'-MOE) and 6'-(S)--CH.sub.3Bicyclic Nucleoside (e.g cEt)
Modifications Targeting Human Target-X Targeting Intronic
Repeats
[0763] Additional antisense oligonucleotides were designed
targeting the intronic repeat regions of Target-X.
[0764] The newly designed chimeric antisense oligonucleotides and
their motifs are described in Table 37. The internucleoside
linkages throughout each gapmer are phosphorothioate linkages
(P.dbd.S) and are designated as "s". Nucleosides followed by "d"
indicate 2'-deoxyribonucleosides. Nucleosides followed by "k"
indicate 6'-(S)--CH.sub.3 bicyclic nucleosides (e.g cEt).
Nucleosides followed by "e" indicate 2'-O-methoxyethyl (2'-MOE)
nucleosides. "N" indicates modified or naturally occurring
nucleobases (A, T, C, G, U, or 5-methyl C).
[0765] Each gapmer listed in Table 37 is targeted to the intronic
region of human Target-X genomic sequence, designated herein as
Target-X.
[0766] Cultured Hep3B cells at a density of 20,000 cells per well
were transfected using electroporation with 2,000 nM antisense
oligonucleotide. After a treatment period of approximately 24
hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human primer probe set
was used to measure mRNA levels. Target-X mRNA levels were adjusted
according to total RNA content, as measured by RIBOGREEN.RTM..
Results are presented as percent inhibition of Target-X, relative
to untreated control cells.
TABLE-US-00038 TABLE 37 Inhibition of human Target-X mRNA levels by
chimeric antisense oligonucleotides targeted to Target-X SEQ ISIS %
SEQ ID Sequence (5' to 3') No inhibition CODE NO Nks Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds 472998 90 508 7 Nds Nks Nk Nks Nks Nks
Nds Nds Nds Nds Nds Nds Nds Nds 473327 88 30 6 Nds Nds Nes Nes Ne
Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537024 74 509 6 Nds Nds
Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537025 79
510 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537026 76 511 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537028 37 512 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537029 45 513 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537030 67 514 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537031 59 515 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
537032 9 516 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 537033 65 517 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 537034 71 518 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 537035 68 519 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537036 74 520 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537038
69 521 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537039 67 522 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537040 68 523 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537041 76 524 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537042 77 525 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537043 70 526 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
537044 82 527 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 537045 69 528 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 537047 35 529 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 537049 62 530 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537051 62 531 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537055
16 532 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537056 25 533 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537057 49 534 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537058 49 535 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537059 53 536 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537060 73 537 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
537061 70 538 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 537062 69 539 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 537063 68 540 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 537064 71 541 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537065 67 542 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537066
68 543 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537067 71 544 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537068 86 545 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537069 82 546 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537070 87 547 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537792 36 548 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
537793 35 549 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 537794 35 550 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 537795 33 551 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 537796 49 552 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537797 54 553 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537798
68 554 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537799 72 555 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537800 69 556 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537801 82 557 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537802 72 558 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537803 72 559 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
537804 67 560 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 537805 74 561 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 537806 70 562 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 537809 60 563 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537810 71 564 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537811
69 565 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537812 80 566 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537813 74 567 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537814 54 568 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537837 70 569 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537838 76 570 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
537839 76 571 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 537840 80 572 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 537841 81 573 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 537842 75 574 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537843 70 575 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537844
73 576 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 537845 59 577 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 537846 51 578 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 537847 52 579 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537848 41 580 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 537849 44 581 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
538160 69 582 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 538172 24 583 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 538173 23 584 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 538185 68 585 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538187 69 585 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538189
81 587 6 Nds Nds Nks Nks Nk
Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538191 66 588 6 Nds Nds
Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538192 59
589 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 538193 16 590 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 538194 10 591 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 538195 15 592 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538196 3 593 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538197 36 594 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
538198 49 595 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 538199 47 596 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 538200 57 597 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 538201 71 598 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538202 60 599 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538203
55 600 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 538204 62 601 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 538205 68 602 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 538228 63 603 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538229 26 604 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538230 75 605 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
538231 75 606 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 538233 52 607 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 538235 26 608 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 538237 28 609 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538239 54 610 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538241
73 611 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 538242 68 612 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 538243 61 613 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 538245 75 614 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538253 37 615 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 538254 45 616 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
538361 56 617 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 538378 70 618 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 538380 68 619 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 538381 57 620 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540361 71 621 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540362
73 622 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 540363 78 623 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 540364 89 624 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 540365 83 625 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540366 84 626 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540367 65 627 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
540368 55 628 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 540369 82 629 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 540370 86 630 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 540371 74 631 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540372 82 632 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540373
81 633 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 540374 87 634 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 540375 78 635 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 540376 69 636 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540377 88 637 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540378 85 638 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
540379 77 639 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 540380 84 640 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 540381 85 641 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 540382 69 642 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540383 85 643 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540384
88 644 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 540385 87 645 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 540386 86 646 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 540387 77 647 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540388 86 648 6 Nds Nds Nks
Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540389 86 649 6
Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds
540390 85 650 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds
Nds Nds Nds 540391 83 651 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds
Nds Nds Nds Nds Nds Nds 540392 43 652 6 Nds Nds Nks Nks Nk Nes Nes
Nes Nds Nds Nds Nds Nds Nds Nds Nds 540393 88 653 6 Nds Nds Nks Nks
Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540394 68 654 6 Nds
Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540395
87 655 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds Nds Nds Nds
Nds 540396 87 656 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds Nds Nds Nds
Nds Nds Nds Nds 540397 59 657 6 Nds Nds Nks Nks Nk Nes Nes Nes Nds
Nds Nds Nds Nds Nds Nds Nds 540398 36 658 6 Nds Nds Nks Nks Nk Nes
Nes Nes Nds Nds Nds Nds Nds Nds Nds Nds 540399 81 659 6 Nds Nds Nks
Nks Nk
Example 23
High Dose Tolerability of Modified Oligonucleotides Comprising
2'-O-Methoxyethyl (2'-MOE) and 6'-(S)--CH3 Bicyclic Nucleoside (e.g
cEt) Modifications Targeting Human Target-X in BALB/c Mice
[0767] BALB/c mice were treated at a high dose with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for changes in the levels of various plasma chemistry
markers.
[0768] Additionally, the newly designed antisense oligonucleotides
were created with the same sequences as the antisense
oligonucleotides from the study described above and were also added
to this screen targeting intronic repeat regions of Target-X.
[0769] The newly designed modified antisense oligonucleotides and
their motifs are described in Table 38. The internucleoside
linkages throughout each gapmer are phosphorothioate linkages
(P.dbd.S). Nucleosides followed by "d" indicate
2'-deoxyribonucleosides. Nucleosides followed by "k" indicate
6'-(S)--CH3 bicyclic nucleoside (e.g cEt) nucleosides. Nucleosides
followed by "e" indicate 2'-O-methoxyethyl (2'-MOE) nucleosides.
"N" indicates modified or naturally occurring nucleobases (A, T, C,
G, U, or 5-methyl C).
[0770] Each gapmer listed in Table 38 is targeted to the intronic
region of human Target-X genomic sequence, designated herein as
Target-X. "Start site" indicates the 5'-most nucleoside to which
the gapmer is targeted in the human gene sequence. "Stop site"
indicates the 3'-most nucleoside to which the gapmer is targeted
human gene sequence.
TABLE-US-00039 TABLE 38 Modified antisense oligonucleotides
targeted to Target-X SEQ ISIS SEQ ID Sequence (5' to 3') No CODE NO
Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne
537721 509 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nes Nes Ne 537738 524 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nes Nes Ne 537759 539 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nes Nes Ne 537761 541 6 Nks Nks Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nes Nes Ne 537763 543 6 Nks Nks Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne 537850 548 6 Nks Nks Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne 537858 556 6 Nks
Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne 537864
562 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes
Ne 537869 565 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nes Nes Ne 537872 568 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nes Nes Ne 537897 571 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nes Nes Ne 540118 582 6 Nks Nks Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nes Nes Ne 540138 602 6 Nks Nks Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne 540139 603 6 Nks Nks Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne 540148 612 6 Nks
Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes Ne 540153
617 6 Nks Nks Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nes Nes
Ne 540155 619 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nks Nks Ne 540162 624 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nks Nks Ne 540164 626 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nks Nks Ne 540168 630 6 Nes Nes Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nks Nks Ne 540172 634 6 Nes Nes Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 540175 637 6 Nes Nes Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 540176 638 6 Nes
Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 540178
640 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks
Ne 540179 641 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nks Nks Ne 540181 643 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nks Nks Ne 540182 644 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nks Nks Ne 540183 645 6 Nes Nes Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nks Nks Ne 540184 646 6 Nes Nes Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 540186 648 6 Nes Nes Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 540187 649 6 Nes
Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 540188
650 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks
Ne 540191 653 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nks Nks Ne 540193 655 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nks Nks Ne 540194 656 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nks Nks Ne 544811 547 6 Nes Nes Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nks Nks Ne 544812 545 6 Nes Nes Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 544813 527 6 Nes Nes Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 544814 557 6 Nes
Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 544815
546 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks
Ne 544816 573 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nks Nks Ne 544817 572 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nks Nks Ne 544818 566 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nks Nks Ne 544819 510 6 Nes Nes Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nks Nks Ne 544820 525 6 Nes Nes Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 544821 567 6 Nes Nes Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 544826 537 6 Nes
Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 544827
538 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks
Ne 544828 539 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nks Nks Ne 544829 540 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nks Nks Ne 544830 541 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nks Nks Ne 545471 542 6 Nes Nes Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nks Nks Ne 545472 543 6 Nes Nes Nks Nds Nds
Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 545473 544 6 Nes Nes Nks
Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 545474 558 6 Nes
Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks Ne 545475
559 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds Nks Nks
Ne 545476 560 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds Nds Nds
Nks Nks Ne 545477 561 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds Nds Nds
Nds Nds Nks Nks Ne 545478 562 6 Nes Nes Nks Nds Nds Nds Nds Nds Nds
Nds Nds Nds Nds Nks Nks Ne 545479 556 6 Nks Nks Nks Nds Nds Nds Nds
Nds Nds Nds Nds Nds Nds Nes Nes Ne 537727 514 6
Treatment
[0771] Male BALB/c mice were injected subcutaneously with a single
dose of 200 mg/kg of ISIS 422142, ISIS 457851, ISIS 473294, ISIS
473295, ISIS 473327, ISIS 484714, ISIS 515334, ISIS 515338, ISIS
515354, ISIS 515366, ISIS 515380, ISIS 515381, ISIS 515382, ISIS
515384, ISIS 515386, ISIS 515387, ISIS 515388, ISIS 515406, ISIS
515407, ISIS 515408, ISIS 515422, ISIS 515423, ISIS 515424, ISIS
515532, ISIS 515533, ISIS 515534, ISIS 515538, ISIS 515539, ISIS
515558, ISIS 515656, ISIS 515575, ISIS 515926, ISIS 515944, ISIS
515945, ISIS 515948, ISIS 515949, ISIS 515951, ISIS 515952, ISSI
516003, ISIS 516055, ISIS 516057, ISIS 516060, ISIS 516062, ISIS
529126, ISIS 529146, ISIS 529166, ISIS 529170, ISIS 529172, ISIS
529173, ISIS 529174, ISIS 529175, ISSI 529176, ISIS 529182, ISIS
529183, ISIS 529186, ISIS 529282, ISIS 529304, ISIS 529306, ISIS
529360, ISIS 529450, ISIS 529459, ISIS 529460, ISIS 529461, ISIS
529547, ISIS 529550, ISIS 529551, ISIS 529553, ISIS 529557, ISIS
529562, ISIS 529563, ISIS 529564, ISIS 529565, ISIS 529575, ISIS
529582, ISIS 529589, ISIS 529607, ISIS 529614, ISIS 529632, ISIS
529650, ISIS 529651, ISIS 529657, ISIS 529663, ISIS 529725, ISIS
529745, ISIS 529765, ISIS 529785, ISIS 529804, ISIS 529818, ISIS
529823, ISIS 529854, ISIS 534528, ISIS 534534, ISIS 534594, ISIS
534660, ISIS 534663, ISIS 534664, ISIS 534676, ISIS 534677, ISIS
537679, ISIS 537683, ISIS 534693, ISIS 534701, ISIS 534716, ISIS
534730, ISIS 534765, ISIS 534795, ISIS 534796, ISIS 534797, ISIS
534798, ISIS 534799, ISIS 534800, ISIS 534802, ISIS 534806, ISSI
534830, ISIS 534838, ISIS 534888, ISIS 534890, ISIS 534898, ISIS
534911, ISIS 534920, ISIS 534926, ISIS 534937, ISIS 534950, ISSI
534956, ISIS 534980, ISIS 534986, ISIS 535010, ISIS 535043, ISIS
535049, ISIS 535076, ISIS 535082, ISSI 535142, ISIS 537024, ISIS
537030, ISIS 537041, ISIS 537062, ISIS 537064, ISIS 537066, ISIS
537721, ISIS 537727, ISIS 537738, ISIS 537759, ISIS 537761, ISIS
537763, ISIS 537792, ISIS 537800, ISIS 537806, ISIS 537811, ISIS
537814, ISIS 537839, ISIS 537850, ISSI 537858, ISIS 537864, ISIS
537869, ISIS 537872, ISIS 537897, ISIS 538160, ISIS 538196, ISIS
538205, ISIS 538228, ISIS 538242, ISIS 538361, ISIS 538380, ISIS
540118, ISIS 540138, ISIS 540139, ISIS 540148, ISIS 540153, ISIS
540155, ISIS 540162, ISIS 540164, ISIS 540168, ISIS 540172, ISIS
540175, ISIS 540176, ISIS 540178, ISIS 540179, ISIS 540181, ISIS
540182, ISIS 540183, ISIS 540184, ISIS 540186, ISIS 540187, ISIS
540188, ISIS 540191, ISIS 540193, ISIS 540194, ISIS 544811, ISIS
544812, ISIS 544813, ISIS 544814, ISIS 544815, ISIS 544816, ISIS
544817, ISIS 544818, ISIS 544819, ISIS 544820, ISIS 544821, ISIS
544826, ISIS 544827, ISIS 544828, ISIS 544829, ISIS 544830, ISIS
545471, ISIS 545472, ISIS 545473, ISIS 545474, ISIS 545475, ISIS
545476, ISIS 545477, ISIS 545478, and ISIS 545479. One set of male
BALB/c mice was injected with a single dose of PBS. Mice were
euthanized 96 hours later, and organs and plasma were harvested for
further analysis.
Plasma Chemistry Markers
[0772] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin,
albumin, and BUN were measured using an automated clinical
chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.).
[0773] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 529166, ISIS
529170, ISIS 529175, ISIS 529176, ISIS 529186, ISIS 529282, ISIS
529360, ISIS 529450, ISIS 529459, ISIS 529460, ISIS 529547, ISIS
529549, ISIS 529551, ISIS 529553, ISIS 529557, ISIS 529562, ISIS
529575, ISIS 529582, ISIS 529607, ISIS 529589, ISIS 529632, ISIS
529657, ISIS 529725, ISIS 529745, ISIS 529785, ISIS 529799, ISIS
529804, ISIS 529818, ISIS 529823, ISIS 534950, ISIS 534980, ISIS
535010, ISIS 537030, ISIS 537041, ISIS 537062, ISIS 537064, ISIS
537066, ISIS 537759, ISIS 537792, ISIS 537800, ISIS 537839, ISIS
538228, ISIS 473294, ISIS 473295, ISIS 484714, ISIS 515338, ISIS
515366, ISIS 515380, ISIS 515381, ISIS 515387, ISIS 515408, ISIS
515423, ISIS 515424, ISIS 515532, ISIS 515534, ISIS 515538, ISIS
515539, ISIS 515558, ISIS 515575, ISIS 515926, ISIS 515944, ISIS
515945, ISIS 515951, ISIS 515952, ISIS 529126, ISIS 529765, ISIS
534528, ISIS 534534, ISIS 534594, ISIS 534663, ISIS 534676, ISIS
534677, ISIS 534679, ISIS 534683, ISIS 534693, ISIS 534701, ISIS
534716, ISIS 534730, ISIS 534806, ISIS 534830, ISIS 534838, ISIS
534890, ISIS 534898, ISIS 534911, ISIS 534937, ISIS 534956, ISIS
534986, ISIS 535043, ISIS 535049, ISIS 535076, ISIS 535082, ISIS
535142, ISIS 538160, ISIS 538242, ISIS 538361, ISIS 538380, ISIS
534795, ISIS 534796, ISIS 534797, ISIS 540162, ISIS 540164, ISIS
540168, ISIS 540172, ISIS 540175, ISIS 540176, ISIS 540178, ISIS
540179, ISIS 540181, ISIS 540182, ISIS 540183, ISIS 540184, ISIS
540186, ISIS 540187, ISIS 540188, ISIS 540191, ISIS 540193, ISIS
540194, ISIS 544813, ISIS 544814, ISIS 544816, ISIS 544826, ISIS
544827, ISIS 544828, ISIS 544829, ISIS 545473, and ISIS 545474 were
considered very tolerable in terms of liver function. Based on
these criteria, ISIS 529173, ISIS 529854, ISIS 529614, ISIS 515386,
ISIS 515388, ISIS 515949, ISIS 544817, and ISIS 545479 were
considered tolerable in terms of liver function.
Example 24
Tolerability of Antisense Oligonucleotides Targeting Human Target-X
in Sprague-Dawley Rats
[0774] Sprague-Dawley rats are a multipurpose model used for safety
and efficacy evaluations. The rats were treated with ISIS antisense
oligonucleotides from the studies described in the Examples above
and evaluated for changes in the levels of various plasma chemistry
markers.
Treatment
[0775] Six-eight week old male Sprague-Dawley rats were maintained
on a 12-hour light/dark cycle and fed ad libitum with Teklad normal
rat chow. Groups of four Sprague-Dawley rats each were injected
subcutaneously twice a week for 6 weeks with 25 mg/kg of ISIS
473286, ISIS 473547, ISIS 473567, ISIS 473589, ISIS 473630, ISIS
484559, ISIS 515636, ISIS 515640, ISIS 515641, ISIS 515655, ISIS
515657, ISIS 516046, ISIS 516048, ISIS 516051, ISIS 516052, and
ISIS 516062. A group of four Sprague-Dawley rats was injected
subcutaneously twice a week for 6 weeks with PBS. Forty eight hours
after the last dose, rats were euthanized and organs and plasma
were harvested for further analysis.
Liver Function
[0776] To evaluate the effect of ISIS oligonucleotides on hepatic
function, plasma levels of transaminases were measured using an
automated clinical chemistry analyzer (Hitachi Olympus AU400e,
Melville, N.Y.). Plasma levels of ALT (alanine transaminase) and
AST (aspartate transaminase) were measured. Plasma levels of
Bilirubin and BUN were also measured using the same clinical
chemistry analyzer.
[0777] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 473286, ISIS
473547, ISSI 473589, ISIS 473630, ISIS 484559, ISIS 515636, ISIS
515640, ISIS 515655, ISIS 516046, and ISIS 516051 were considered
very tolerable in terms of liver function. Based on these criteria,
ISIS 473567, ISIS 515641, ISIS 515657, ISIS 516048, and ISIS 516051
were considered tolerable in terms of liver function.
Example 25
Tolerability of Chimeric Antisense Oligonucleotides Comprising
2'-O-Methoxyethyl (2'-MOE) Modifications Targeting Human Target-X
in Sprague-Dawley Rats
[0778] Sprague-Dawley rats were treated with ISIS antisense
oligonucleotides from the studies described in the Examples above
and evaluated for changes in the levels of various plasma chemistry
markers.
Treatment
[0779] Six-eight week old male Sprague-Dawley rats were maintained
on a 12-hour light/dark cycle and fed ad libitum with Purina normal
rat chow. Groups of four Sprague-Dawley rats each were injected
subcutaneously twice a week for 6 weeks with 50 mg/kg of ISIS
407936, ISIS 416507, ISIS 416508, ISIS 490208, ISIS 490279, ISIS
490323, ISIS 490368, ISIS 490396, ISIS 490803, ISIS 491122, ISIS
513419, ISIS 513446, ISIS 513454, ISIS 513455, ISIS 513456, ISIS
513504, ISIS 513507, and ISIS 513508. A group of four
Sprague-Dawley rats was injected subcutaneously twice a week for 6
weeks with PBS. Forty eight hours after the last dose, rats were
euthanized and organs and plasma were harvested for further
analysis.
Liver Function
[0780] To evaluate the effect of ISIS oligonucleotides on hepatic
function, plasma levels of transaminases were measured using an
automated clinical chemistry analyzer (Hitachi Olympus AU400e,
Melville, N.Y.). Plasma levels of Bilirubin and BUN were also
measured using the same clinical chemistry analyzer.
[0781] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 416507, ISIS
490208, ISIS 490368, ISIS 490396, ISIS 490803, ISIS 491122, ISIS
513446, ISIS 513454, ISIS 513455, ISIS 513456, ISIS 513504, and
ISIS 513508 were considered very tolerable in terms of liver
function. Based on these criteria, ISIS 407936, ISIS 416508, ISIS
490279, and ISIS 513507 were considered tolerable in terms of liver
function.
Example 26
Tolerability of Chimeric Antisense Oligonucleotides Comprising
2'-O-Methoxyethyl (2'-MOE) Modifications Targeting Human Target-X
in CD-1 Mice
[0782] CD-1 mice are a multipurpose mice model, frequently utilized
for safety and efficacy testing. The mice were treated with ISIS
antisense oligonucleotides selected from studies described above
and evaluated for changes in the levels of various plasma chemistry
markers.
Treatment
[0783] Groups of 3 male CD-1 mice each were injected subcutaneously
twice a week for 6 weeks with 50 mg/kg of ISIS 473244, ISIS 473295,
ISIS 484714, ISIS 515386, ISIS 515424, ISIS 515534, ISIS 515558,
ISIS 515926, ISIS 515949, ISIS 515951, ISIS 515952, ISIS 529126,
ISIS 529166, ISIS 529173, ISIS 529186, ISIS 529360, ISIS 529461,
ISIS 529553, ISIS 529564, ISIS 529582, ISIS 529614, ISIS 529725,
ISIS 529745, ISIS 529765, ISIS 529785, ISIS 529799, ISIS 529818,
ISIS 529823, ISIS 534528, ISIS 534594, and ISIS 534664. One group
of male CD-1 mice was injected subcutaneously twice a week for 6
weeks with PBS. Mice were euthanized 48 hours after the last dose,
and organs and plasma were harvested for further analysis.
Plasma Chemistry Markers
[0784] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin,
albumin, and BUN were measured using an automated clinical
chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.).
[0785] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 473295, ISIS
473714, ISIS 515558, ISIS 515926, 515951, ISIS 515952, ISIS 529126,
ISIS 529166, 529564, ISIS 529582, ISIS 529614, ISIS 529725, ISIS
529765, ISIS 529799, ISIS 529823, and ISIS 534594 were considered
very tolerable in terms of liver function. Based on these criteria,
ISIS 515424, ISIS 515534, ISIS 515926, ISIS 529785, and ISIS 534664
were considered tolerable in terms of liver function.
Example 27
Tolerability of Chimeric Antisense Oligonucleotides Comprising
2'-O-Methoxyethyl (2'-MOE) Modifications Targeting Human Target-X
in CD-1 Mice
[0786] CD-1 mice were treated with ISIS antisense oligonucleotides
selected from studies described above and evaluated for changes in
the levels of various plasma chemistry markers.
Treatment
[0787] Groups of 3 male CD-1 mice each were injected subcutaneously
twice a week for 6 weeks with 100 mg/kg of ISIS 490208, ISIS
490279, ISIS 490323, ISIS 490368, ISIS 490396, ISIS 490803, ISIS
491122, ISIS 513419, ISIS 513446, ISIS 513454, ISIS 513455, ISIS
513456, ISIS 513504, ISIS 513507, and ISIS 513508. Groups of 3 male
CD-1 mice each were injected subcutaneously twice a week for 6
weeks with 100 mg/kg of ISIS 407936, ISIS 416507, and ISIS 416508,
which are gapmers described in a previous publication. One group of
male CD-1 mice was injected subcutaneously twice a week for 6 weeks
with PBS. Mice were euthanized 48 hours after the last dose, and
organs and plasma were harvested for further analysis.
Plasma Chemistry Markers
[0788] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin, and BUN
were measured using an automated clinical chemistry analyzer
(Hitachi Olympus AU400e, Melville, N.Y.).
[0789] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 407936, ISIS
416507, ISIS 490279, ISIS 490368, ISIS 490396, ISIS 490803, ISIS
491122, ISIS 513446, ISIS 513454, ISIS 513456, and ISIS 513504 were
considered very tolerable in terms of liver function. Based on
these criteria, ISIS 490208, ISIS 513455, ISIS 513507, and ISIS
513508 were considered tolerable in terms of liver function.
Example 28
Efficacy of Modified Oligonucleotides Comprising 2'-O-Methoxyethyl
(2'-MOE) and 6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt)
Modifications Targeting Human Target-X in Transgenic Mice
[0790] Transgenic mice were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for efficacy.
Treatment
[0791] Groups of 2-3 male and female transgenic mice were injected
subcutaneously twice a week for 3 weeks with 5 mg/kg/week of ISIS
473244, ISIS 473295, ISIS 484714, ISIS 515926, ISIS 515951, ISIS
515952, ISIS 516062, ISIS 529126, ISIS 529553, ISIS 529745, ISIS
529799, ISIS 534664, ISIS 534826, ISIS 540168, ISIS 540175, ISIS
544826, ISIS 544827, ISIS 544828, and ISIS 544829. One group of
mice was injected subcutaneously twice a week for 3 weeks with PBS.
Mice were euthanized 48 hours after the last dose, and organs and
plasma were harvested for further analysis.
Protein Analysis
[0792] Plasma protein levels of Target-X were estimated using a
Target-X ELISA kit (purchased from Hyphen Bio-Med). Results are
presented as percent inhibition of Target-X, relative to control.
As shown in Table 39, several antisense oligonucleotides achieved
reduction of human Target-X over the PBS control. `n.d.` indicates
that the value for that particular oligonucleotide was not
measured.
TABLE-US-00040 TABLE 39 Percent inhibition of Target-X plasma
protein levels in transgenic mice ISIS No % inhibition 473244 2
473295 13 484714 19 515926 11 515951 13 515952 0 516062 62 529126 0
529553 0 529745 22 529799 26 534664 32 534826 n.d. 540168 94 540175
98 544813 0 544826 23 544827 60 544828 33 544829 53
Example 29
Efficacy of Modified Oligonucleotides Comprising 2'-Methoxyethyl
(2'-MOE) and 6'-(S)--CH.sub.3 Bicyclic Nucleoside (e.g cEt)
Modifications Targeting Human Target-X in Transgenic Mice
[0793] Transgenic mice were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for efficacy.
Treatment
[0794] Groups of 2-3 male and female transgenic mice were injected
subcutaneously twice a week for 3 weeks with 1 mg/kg/week of ISIS
407936, ISIS 490197, ISIS 490275, ISIS 490278, ISIS 490279, ISIS
490323, ISIS 490368, ISIS 490396, ISIS 490803, ISIS 491122, ISIS
513446, ISIS 513447, ISIS 513504, ISIS 516062, ISIS 529166, ISIS
529173, ISIS 529360, ISIS 529725, ISIS 534557, ISIS 534594, ISIS
534664, ISIS 534688, ISIS 534689, ISIS 534915, ISIS 534916, ISIS
534917, and ISIS 534980. One group of mice was injected
subcutaneously twice a week for 3 weeks with PBS. Mice were
euthanized 48 hours after the last dose, and organs and plasma were
harvested for further analysis.
Protein Analysis
[0795] Plasma protein levels of Target-X were estimated using a
Target-X ELISA kit (purchased from Hyphen Bio-Med). Results are
presented as percent inhibition of Target-X, relative to control.
As shown in Table 40, several antisense oligonucleotides achieved
reduction of human Target-X over the PBS control.
TABLE-US-00041 TABLE 40 Percent inhibition of Target-X plasm
protein levels in transgenic mice ISIS No % inhibition 407936 28
490197 50 490275 21 490278 20 490279 59 490323 54 490368 22 490396
31 490803 30 491122 51 513446 29 513447 44 513504 45 516062 75
529166 37 529173 64 529360 43 529725 53 534557 76 534594 40 534664
14 534687 12 534688 48 534689 25 534915 40 534916 45 534917 66
534980 62
Example 30
Tolerability of Antisense Oligonucleotides Targeting Human Target-X
in Sprague-Dawley Rats
[0796] Sprague-Dawley rats were treated with ISIS antisense
oligonucleotides from the studies described in the Examples above
and evaluated for changes in the levels of various plasma chemistry
markers.
Treatment
[0797] Six-eight week old male Sprague-Dawley rats were maintained
on a 12-hour light/dark cycle and fed ad libitum with Teklad normal
rat chow. Groups of four Sprague-Dawley rats each were injected
subcutaneously twice a week for 4 weeks with ISIS 515380, ISIS
515381, ISIS 515387, ISIS 529175, ISIS 529176, ISIS 529575, ISIS
529804, and ISIS 537064. Doses 1, 5, 6, 7, and 8 were 25 mg/kg;
dose 2 was 75 mg/kg; doses 3 and 4 were 50 mg/kg. One group of four
Sprague-Dawley rats was injected subcutaneously twice a week for 4
weeks with PBS. Forty eight hours after the last dose, rats were
euthanized and organs and plasma were harvested for further
analysis.
Liver Function
[0798] To evaluate the effect of ISIS oligonucleotides on hepatic
function, plasma levels of transaminases were measured using an
automated clinical chemistry analyzer (Hitachi Olympus AU400e,
Melville, N.Y.). Plasma levels of ALT (alanine transaminase) and
AST (aspartate transaminase) were measured. Plasma levels of
Bilirubin and BUN were also measured using the same clinical
chemistry analyzer.
[0799] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused increase in the levels
within three times the upper limit of normal levels of
transaminases were deemed very tolerable. ISIS oligonucleotides
that caused increase in the levels of transaminases between three
times and seven times the upper limit of normal levels were deemed
tolerable. Based on these criteria, ISIS 515380, ISIS 515387, ISIS
529175, ISIS 529176, ISIS 529804, and ISIS 537064 were considered
very tolerable in terms of liver function. Based on these criteria,
ISIS 515381 was considered tolerable in terms of liver
function.
Example 31
Efficacy of Antisense Oligonucleotides Targeting Human Target-X in
Transgenic Mice
[0800] Transgenic mice were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for efficacy.
Treatment
[0801] Two groups of 3 male and female transgenic mice were
injected subcutaneously twice a week for 2 weeks with 0.5
mg/kg/week or 1.5 mg/kg/week of ISIS 407935 and ISIS 513455.
Another group of mice was subcutaneously twice a week for 2 weeks
with 0.6 mg/kg/week or 2.0 mg/kg/week of ISIS 473286. Another 16
groups of mice were subcutaneously twice a week for 2 weeks with
0.1 mg/kg/week or 0.3 mg/kg/week of ISIS 473589, ISIS 515380, ISIS
515423, ISIS 529804, ISIS 534676, ISIS 534796, ISIS 540162, ISIS
540164, ISIS 540175, ISIS 540179, ISIS 540181, ISIS 540182, ISIS
540186, ISIS 540191, ISIS 540193, ISIS 544827, or ISIS 545474.
Another 3 groups of mice were injected subcutaneously twice a week
for 2 weeks with 0.3 mg/kg/week of ISIS 516062, ISIS 534528 or ISIS
534693. One group of mice was injected subcutaneously twice a week
for 2 weeks with PBS. Mice were euthanized 48 hours after the last
dose, and organs and plasma were harvested for further
analysis.
Protein Analysis
[0802] Plasma protein levels of Target-X were estimated using a
Target-X ELISA kit (purchased from Hyphen Bio-Med). Results are
presented as percent inhibition of Target-X, relative to control.
As shown in Table 41, several antisense oligonucleotides achieved
reduction of human Target-X over the PBS control.
TABLE-US-00042 TABLE 41 Percent inhibition of Target-X plasma
protein levels in transgenic mice Dose % ISIS No (mg/kg/wk)
inhibition 407935 1.5 65 0.5 31 513455 1.5 64 0.5 52 473286 2 67
0.6 11 473589 0.3 42 0.1 12 515380 0.3 64 0.1 32 515423 0.3 72 0.1
37 529804 0.3 36 0.1 24 534676 0.3 31 0.1 18 534796 0.3 54 0.1 43
540162 0.3 84 0.1 42 540164 0.3 25 0.1 17 540175 0.3 90 0.1 55
540179 0.3 29 0.1 24 540181 0.3 53 0.1 0 540182 0.3 78 0.1 21
540186 0.3 72 0.1 46 540191 0.3 62 0.1 35 540193 0.3 74 0.1 46
544827 0.3 28 0.1 19 545474 0.3 59 0.1 0 516062 0.3 33 534528 0.3
41 534693 0.3 34
Example 32
Tolerability of Antisense Oligonucleotides Targeting Human Target-X
in Sprague-Dawley Rats
[0803] Sprague-Dawley rats were treated with ISIS antisense
oligonucleotides from the studies described in the Examples above
and evaluated for changes in the levels of various plasma chemistry
markers.
Treatment
[0804] Five-six week old male Sprague-Dawley rats were maintained
on a 12-hour light/dark cycle and fed ad libitum with Teklad normal
rat chow. Groups of four Sprague-Dawley rats each were injected
subcutaneously twice a week for 4 weeks with 50 mg/kg of ISIS
515423, ISIS 515424, ISIS 515640, ISIS 534676, ISIS 534796, ISIS
534797, ISIS 540162, ISIS 540164, ISIS 540172, ISIS 540175, ISIS
540179, ISIS 540181, ISIS 540182, ISIS 540183, ISIS 540186, ISIS
540191, and ISIS 545474. A group of four Sprague-Dawley rats was
injected subcutaneously twice a week for 4 weeks with PBS. Forty
eight hours after the last dose, rats were euthanized and organs
and plasma were harvested for further analysis.
Liver Function
[0805] To evaluate the effect of ISIS oligonucleotides on hepatic
function, plasma levels of transaminases were measured using an
automated clinical chemistry analyzer (Hitachi Olympus AU400e,
Melville, N.Y.). Plasma levels of ALT (alanine transaminase) and
AST (aspartate transaminase) were measured. Plasma levels of
Bilirubin and BUN were also measured using the same clinical
chemistry analyzer.
[0806] ISIS oligonucleotides that did not cause any increase in the
levels of transaminases, or which caused an increase within three
times the upper limit of normal (ULN) were deemed very tolerable.
ISIS oligonucleotides that caused an increase in the levels of
transaminases between three times and seven times the ULN were
deemed tolerable. Based on these criteria, ISIS 540164, ISIS
540172, and ISIS 540175 were considered very tolerable in terms of
liver function. Based on these criteria, ISIS 534676, ISIS 534796,
ISIS 534797, ISIS 540162, and ISIS 540179 were considered tolerable
in terms of liver function.
Example 33
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0807] Antisense oligonucleotides selected from the studies
described above were tested at various doses in Hep3B cells. Cells
were plated at a density of 20,000 cells per well and transfected
using electroporation with 0.05 .mu.M, 0.15 .mu.M, 0.44 .mu.M, 1.33
.mu.M, and 4.00 .mu.M concentrations of antisense oligonucleotide,
as specified in Table 42. After a treatment period of approximately
16 hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Human Target-X primer
probe set RTS2927 was used to measure mRNA levels. Target-X mRNA
levels were adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells.
[0808] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is also presented in Table 42. As illustrated
in Table 42, Target-X mRNA levels were reduced in a dose-dependent
manner in several of the antisense oligonucleotide treated
cells.
TABLE-US-00043 TABLE 42 Dose-dependent antisense inhibition of
human Target-X in Hep3B cells using electroporation 0.05 0.15 0.44
1.33 4.00 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M .mu.M (.mu.M)
473286 0 1 13 12 15 >4.0 457851 23 32 57 80 93 0.3 473286 3 20
43 71 88 0.5 473286 15 26 24 28 36 >4.0 473286 6 3 10 26 29
>4.0 473327 14 28 35 67 90 0.5 473589 29 53 76 89 95 0.1 515380
44 72 85 93 95 <0.05 515423 43 64 87 95 98 <0.05 515424 38 55
85 92 97 0.1 515636 21 33 74 82 93 0.2 516046 29 23 29 48 78 0.9
516048 35 24 41 67 87 0.4 516052 18 6 48 63 80 0.6 516062 24 14 21
47 68 1.6 529166 16 47 75 87 94 0.2 529173 14 49 77 91 96 0.2
529175 30 69 88 93 96 0.1 529176 34 63 85 93 96 0.1 529360 35 53 74
91 93 0.1 529725 53 69 85 92 95 <0.05 529804 37 41 71 90 94 0.1
534528 50 68 78 93 97 <0.05 534557 48 78 90 94 95 <0.05
534594 39 47 76 87 94 0.1 534676 29 20 40 64 87 0.5 534687 41 37 56
80 93 0.2 534688 16 56 88 94 96 0.1 534689 21 59 82 94 95 0.1
534693 18 58 81 93 95 0.1 534795 19 43 68 90 94 0.2 534796 25 59 80
93 96 0.1 534890 31 55 77 90 96 0.1 534898 22 61 80 94 97 0.1
534915 19 26 51 77 94 0.3 534916 20 36 66 86 93 0.2 534917 34 53 82
89 94 0.1 540162 40 64 84 90 92 <0.05 540164 34 60 83 91 92 0.1
540168 51 79 90 92 94 <0.05 540172 40 66 80 88 92 <0.05
540175 30 61 80 88 91 0.1 540176 7 17 50 75 85 0.5 540179 11 22 25
16 19 >4.0 540181 19 46 72 86 91 0.2 540182 16 66 83 86 92 0.1
540183 39 74 87 92 93 <0.05 540186 31 69 85 91 94 0.1 540191 38
54 80 88 91 0.1 540193 57 67 84 94 97 <0.05 540194 30 45 62 77
91 0.2 544827 37 42 67 82 96 0.1 544829 26 41 42 71 93 0.3 545473
28 27 49 80 97 0.3 545474 23 27 55 84 96 0.3
Example 34
Tolerability of Antisense Oligonucleotides Targeting Human Target-X
in CD-1 Mice
[0809] CD-1 mice were treated with ISIS antisense oligonucleotides
selected from studies described above and evaluated for changes in
the levels of various plasma chemistry markers.
Treatment
[0810] Two groups of 4 male 6-8 week old CD-1 mice each were
injected subcutaneously twice a week for 6 weeks with 50 mg/kg of
ISIS 407935 and ISIS 490279. Another seven groups of 4 male 6-8
week old CD-1 mice each were injected subcutaneously twice a week
for 6 weeks with 25 mg/kg of ISIS 473589, ISIS 529804, ISIS 534796,
ISIS 540162, ISIS 540175, ISIS 540182, and ISIS 540191. One group
of male CD-1 mice was injected subcutaneously twice a week for 6
weeks with PBS. Mice were euthanized 48 hours after the last dose,
and organs and plasma were harvested for further analysis.
Plasma Chemistry Markers
[0811] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin,
albumin, and BUN were measured using an automated clinical
chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.). The
results are presented in Table 43. Treatment with the newly
designed antisense oligonucleotides were more tolerable compared to
treatment with ISIS 407935 (disclosed in an earlier publication),
which caused elevation of ALT levels greater than seven times the
upper limit of normal (ULN).
TABLE-US-00044 TABLE 43 Effect of antisense oligonucleotide
treatment on liver function in CD-1 mice Dose AST BUN Bilirubin
Motif (mg/kg/wk) ALT(IU/L) (IU/L) (mg/dL) (mg/dL) PBS -- -- 37 47
28 0.2 407935 e5-d(10)-e5 100 373 217 24 0.2 490279 kdkdk-d(9)-ee
100 96 82 24 0.2 473589 e5-d(10)-e5 50 93 116 22 0.2 529804
k-d(10)-kekee 50 54 74 27 0.2 534796 ekk-d(10)-kke 50 60 63 27 0.2
540162 eek-d(10)-kke 50 43 55 29 0.2 540175 eek-d(10)-kke 50 113 78
24 0.3 540182 eek-d(10)-kke 50 147 95 26 0.1 540191 eek-d(10)-kke
50 79 88 28 0.2 e = 2'-MOE, k = cEt, d = 2'-deoxynucleoside
Body and Organ Weights
[0812] Body weights, as well as liver, heart, lungs, spleen and
kidney weights were measured at the end of the study, and are
presented in Table 44. Several of the ISIS oligonucleotides did not
cause any changes in organ weights outside the expected range and
were therefore deemed tolerable in terms of organ weights.
TABLE-US-00045 TABLE 44 Body and organ weights (grams) of CD-1 mice
Dose (mg/ Body Liv- Kid- Motif kg/wk) weight er Spleen ney PBS --
-- 42 2.2 0.12 0.64 407935 e5-d(10)-e5 100 40 2.6 0.20 0.62 490279
kdkdk-d(9)-ee 100 42 2.8 0.17 0.61 473589 e5-d(10)-e5 50 41 2.5
0.16 0.67 529804 k-d(10)-kekee 50 40 2.3 0.14 0.62 534796
ekk-d(10)-kke 50 37 2.6 0.15 0.51 540162 eek-d(10)-kke 50 42 2.4
0.15 0.60 540175 eek-d(10)-kke 50 39 2.2 0.11 0.62 540182
eek-d(10)-kke 50 41 2.6 0.16 0.61 540191 eek-d(10)-kke 50 40 2.4
0.13 0.60 e = 2'-MOE, k = cEt, d = 2'-deoxynucleoside
Example 35
Tolerability of Antisense Oligonucleotides Targeting Human Target-X
in Sprague-Dawley Rats
[0813] Sprague-Dawley rats were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for changes in the levels of various plasma chemistry
markers.
Treatment
[0814] Two groups of 4 male 7-8 week old Sprague-Dawley rats each
were injected subcutaneously twice a week for 6 weeks with 50 mg/kg
of ISIS 407935 and ISIS 490279. Another seven groups of 4 male 6-8
week old Sprague-Dawley rats each were injected subcutaneously
twice a week for 6 weeks with 25 mg/kg of ISIS 473589, ISIS 529804,
ISIS 534796, ISIS 540162, ISIS 540175, ISIS 540182, and ISIS
540191. One group of male Sprague-Dawley rats was injected
subcutaneously twice a week for 6 weeks with PBS. The rats were
euthanized 48 hours after the last dose, and organs and plasma were
harvested for further analysis.
Plasma Chemistry Markers
[0815] To evaluate the effect of ISIS oligonucleotides on liver and
kidney function, plasma levels of transaminases, bilirubin,
albumin, and BUN were measured using an automated clinical
chemistry analyzer (Hitachi Olympus AU400e, Melville, N.Y.). The
results are presented in Table 45. Treatment with the all antisense
oligonucleotides was tolerable in terms of plasma chemistry markers
in this model.
TABLE-US-00046 TABLE 45 Effect of antisense oligonucleotide
treatment on liver function in Sprague-Dawley rats Dose AST BUN
Bilirubin Motif (mg/kg/wk) ALT(IU/L) (IU/L) (mg/dL) (mg/dL) PBS --
-- 71 83 19 0.2 407935 e5-d(10)-e5 100 74 96 22 0.2 490279
kdkdk-d(9)-ee 100 96 181 22 0.4 473589 e5-d(10)-e5 50 57 73 21 0.2
529804 k-d(10)-kekee 50 54 78 21 0.2 534796 ekk-d(10)-kke 50 68 98
22 0.2 540162 eek-d(10)-kke 50 96 82 21 0.1 540175 eek-d(10)-kke 50
55 73 18 0.2 540182 eek-d(10)-kke 50 45 87 21 0.2 540191
eek-d(10)-kke 50 77 104 21 0.2 e = 2'-MOE, k = cEt, d =
2'-deoxynucleoside
Body and Organ Weights
[0816] Body weights, as well as liver, heart, lungs, spleen and
kidney weights were measured at the end of the study, and are
presented in Table 46. Treatment with all the antisense
oligonucleotides was tolerable in terms of body and organ weights
in this model.
TABLE-US-00047 TABLE 46 Body and organ weights (grams) of
Sprague-Dawley rats Dose (mg/ Body Liv- Kid- Motif kg/wk) weight er
Spleen ney PBS -- -- 443 16 0.8 3.5 ISIS 407935 e5-d(10)-e5 100 337
14 1.8 3.2 ISIS 490279 kdkdk-d(9)-ee 100 365 18 2.2 2.9 ISIS 473589
e5-d(10)-e5 50 432 18 1.3 3.3 ISIS 529804 k-d(10)-kekee 50 429 18
2.2 3.4 ISIS 534796 ekk-d(10)-kke 50 434 15 1.4 3.3 ISIS 540162
eek-d(10)-kke 50 446 18 1.1 3.3 ISIS 540175 eek-d(10)-kke 50 467 16
1.0 3.5 ISIS 540182 eek-d(10)-kke 50 447 22 2.5 4.5 ISIS 540191
eek-d(10)-kke 50 471 21 1.4 3.9 e = 2'-MOE, k = cEt, d =
2'-deoxynucleoside
Example 36
Dose-Dependent Antisense Inhibition of Human Target-X in Cynomolgos
Monkey Primary Hepatocytes
[0817] Antisense oligonucleotides selected from the studies
described above were tested at various doses in cynomolgus monkey
primary hepatocytes. Cells were plated at a density of 35,000 cells
per well and transfected using electroporation with 0.009 .mu.M,
0.03 .mu.M, 0.08 .mu.M, 0.25 .mu.M, 0.74 .mu.M, 2.22 .mu.M, 6.67
.mu.M, and 20.00 .mu.M concentrations of antisense oligonucleotide,
as specified in Table 47. After a treatment period of approximately
16 hours, RNA was isolated from the cells and Target-X mRNA levels
were measured by quantitative real-time PCR. Target-X primer probe
set RTS2927 was used to measure mRNA levels. Target-X mRNA levels
were adjusted according to total RNA content, as measured by
RIBOGREEN.RTM.. Results are presented as percent inhibition of
Target-X, relative to untreated control cells. As illustrated in
Table 47, Target-X mRNA levels were reduced in a dose-dependent
manner with some of the antisense oligonucleotides that are
cross-reactive with the rhesus monkey genomic sequence.
TABLE-US-00048 TABLE 47 Dose-dependent antisense inhibition of
Target-X in cynomolgous monkey primary hepatocytes using
electroporation 0.009 0.03 0.08 0.25 0.74 2.22 6.67 20.00 ISIS No
.mu.M .mu.M .mu.M .mu.M .mu.M .mu.M .mu.M .mu.M 407935 10 18 15 29
56 73 82 88 490279 19 12 13 0 6 18 27 22 473589 5 10 19 42 64 76 88
92 529804 10 3 23 25 57 80 86 91 534796 0 28 23 49 71 81 87 90
540162 9 14 9 6 13 13 11 31 540175 0 4 12 9 10 16 12 22 540182 0 7
0 6 36 12 10 0 540191 6 7 0 0 0 0 21 42
Example 37
Dose-Dependent Antisense Inhibition of Human Target-X in Hep3B
Cells
[0818] Antisense oligonucleotides from the study described above
were also tested at various doses in Hep3B cells. Cells were plated
at a density of 20,000 cells per well and transfected using
electroporation with 0.009 .mu.M, 0.03 .mu.M, 0.08 .mu.M, 0.25
.mu.M, 0.74 .mu.M, 2.22 .mu.M, 6.67 .mu.M, and 20.00 .mu.M
concentrations of antisense oligonucleotide, as specified in Table
48. After a treatment period of approximately 16 hours, RNA was
isolated from the cells and Target-X mRNA levels were measured by
quantitative real-time PCR. Target-X primer probe set RTS2927 was
used to measure mRNA levels. Target-X mRNA levels were adjusted
according to total RNA content, as measured by RIBOGREEN.RTM..
Results are presented as percent inhibition of Target-X, relative
to untreated control cells. As illustrated in Table 48, Target-X
mRNA levels were reduced in a dose-dependent manner with several of
the antisense oligonucleotides.
TABLE-US-00049 TABLE 48 Dose-dependent antisense inhibition of
Target-X in Hep3B cells using electroporation 0.009 0.03 0.08 0.25
0.74 2.22 6.67 20.00 IC.sub.50 ISIS No .mu.M .mu.M .mu.M .mu.M
.mu.M .mu.M .mu.M .mu.M (.mu.M) 407935 3 9 11 35 64 83 87 93 4.5
473244 20 33 50 69 77 89 7 14 0.9 473589 0 14 23 44 74 88 90 94 2.7
490279 0 5 7 15 25 61 76 78 11.6 515533 0 12 21 36 63 78 88 94 3.6
515952 0 12 27 57 76 89 93 94 2.2 516066 6 0 12 26 52 70 81 86 6.0
529459 0 4 24 40 61 78 88 94 3.5 529553 9 7 17 40 58 74 87 93 4.6
529804 0 3 34 64 83 89 93 95 2.0 534796 8 18 43 67 82 89 95 96 1.4
537806 6 11 5 20 37 69 79 86 7.1 540162 18 33 63 75 87 91 91 92 0.7
540175 10 25 55 76 86 89 89 93 1.0 540182 13 36 61 75 84 88 90 93
0.7 540191 3 12 28 61 79 80 88 94 2.2
Example 38
Efficacy of Antisense Oligonucleotides Targeting Human Target-X in
Transgenic Mice
[0819] Transgenic mice were treated with ISIS antisense
oligonucleotides selected from studies described above and
evaluated for efficacy.
Treatment
[0820] Eight groups of 3 transgenic mice each were injected
subcutaneously twice a week for 3 weeks with 20 mg/kg/week, 10
mg/kg/week, 5 mg/kg/week, or 2.5 mg/kg/week of ISIS 407935 or ISIS
490279. Another 24 groups of 3 transgenic mice each were
subcutaneously twice a week for 3 weeks with 5 mg/kg/week, 2.5
mg/kg/week, 1.25 mg/kg/week, or 0.625 mg/kg/week of ISIS 473589,
ISIS 529804, ISIS 534796, ISIS 540162, ISIS 540175, or ISIS 540191.
One group of mice was injected subcutaneously twice a week for 3
weeks with PBS. Mice were euthanized 48 hours after the last dose,
and organs and plasma were harvested for further analysis.
RNA Analysis
[0821] RNA was extracted from plasma for real-time PCR analysis of
Target-X, using primer probe set RTS2927. The mRNA levels were
normalized using RIBOGREEN.RTM.. As shown in Table 49, several
antisense oligonucleotides achieved reduction of human Target-X
over the PBS control. Results are presented as percent inhibition
of Target-X, relative to control. Treatment with newly designed
2'-MOE gapmer, ISIS 490279, caused greater reduction in human
Target-X mRNA levels than treatment with ISIS 407935, the 2'-MOE
gapmer from the earlier publication. Treatment with several of the
newly designed oligonucleotides also caused greater reduction in
human Target-X mRNA levels than treatment with ISIS 407935.
TABLE-US-00050 TABLE 49 Percent inhibition of Target-X mRNA in
transgenic mice Dose % ISIS No Motif (mg/kg/wk) inhibition 407935
e5-d(10)-e5 20.0 85 10.0 57 5.0 45 2.5 28 490279 kdkdk-d(9)-ee 20.0
88 10.0 70 5.0 51 2.5 33 473589 e5-d(10)-e5 5.00 80 2.50 62 1.25 44
0.625 25 529804 k-d(10)-kekee 5.00 55 2.50 41 1.25 0 0.625 1 534796
ekk-d(10)-kke 5.00 56 2.50 41 1.25 5 0.625 0 540162 eek-d(10)-kke
5.00 97 2.50 92 1.25 69 0.625 78 540175 eek-d(10)-kke 5.00 95 2.50
85 1.25 65 0.625 55 540182 eek-d(10)-kke 5.00 97 2.50 83 1.25 54
0.625 10 540191 eek-d(10)-kke 5.00 91 2.50 74 1.25 58 0.625 34 e =
2'-MOE, k = cEt, d = 2'-deoxynucleoside
Protein Analysis
[0822] Plasma protein levels of Target-X were estimated using a
Target-X ELISA kit (purchased from Hyphen Bio-Med). As shown in
Table 50, several antisense oligonucleotides achieved reduction of
human Target-X over the PBS control. Results are presented as
percent inhibition of Target-X, relative to control.
TABLE-US-00051 TABLE 50 Percent inhibition of Target-X plasm
protein levels in transgenic mice Dose % ISIS No Motif (mg/kg/wk)
inhibition 407935 e5-d(10)-e5 20 65 10 47 5 0 2.5 3 490279
kdkdk-d(9)-ee 20 91 10 75 5 31 2.5 23 473589 e5-d(10)-e5 5 78 2.5
40 1.25 6 0.625 0 529804 k-d(10)-kekee 5 50 2.5 36 1.25 0 0.625 8
534796 ekk-d(10)-kke 5 45 2.5 26 1.25 0 0.625 8 540162
eek-d(10)-kke 5 98 2.5 96 1.25 78 0.625 74 540175 eek-d(10)-kke 5
93 2.5 83 1.25 49 0.625 24 540182 eek-d(10)-kke 5 97 2.5 71 1.25 50
0.625 0 540191 eek-d(10)-kke 5 97 2.5 74 1.25 46 0.625 25 e =
2'-MOE, k = cEt, d = 2'-deoxynucleoside
Example 39
Effect of ISIS Antisense Oligonucleotides Targeting Human Target-X
in Cynomolgus Monkeys
[0823] Cynomolgus monkeys were treated with ISIS antisense
oligonucleotides selected from studies described above, including
ISIS 407935, ISIS 490279, ISIS 473589, ISIS 529804, ISIS 534796,
ISIS 540162, ISIS 540175, ISIS 540182, and ISIS 540191. Antisense
oligonucleotide efficacy was evaluated. ISIS 407935, from the
earlier publication, was included in the study for comparison.
Treatment
[0824] Prior to the study, the monkeys were kept in quarantine for
at least a 30-day period, during which the animals were observed
daily for general health. Standard panels of serum chemistry and
hematology, examination of fecal samples for ova and parasites, and
a tuberculosis test were conducted immediately after the animals'
arrival to the quarantine area. The monkeys were 2-4 years old at
the start of treatment and weighed between 2 and 4 kg. Ten groups
of four randomly assigned male cynomolgus monkeys each were
injected subcutaneously with ISIS oligonucleotide or PBS using a
stainless steel dosing needle and syringe of appropriate size into
one of 4 sites on the back of the monkeys; each site used in
clock-wise rotation per dose administered. Nine groups of monkeys
were dosed four times a week for the first week (days 1, 3, 5, and
7) as loading doses, and subsequently once a week for weeks 2-12,
with 35 mg/kg of ISIS 407935, ISIS 490279, ISIS 473589, ISIS
529804, ISIS 534796, ISIS 540162, ISIS 540175, ISIS 540182, or ISIS
540191. A control group of cynomolgus monkeys was injected with PBS
subcutaneously thrice four times a week for the first week (days 1,
3, 5, and 7), and subsequently once a week for weeks 2-12. The
protocols described in the Example were approved by the
Institutional Animal Care and Use Committee (IACUC).
Hepatic Target Reduction
RNA Analysis
[0825] On day 86, RNA was extracted from liver tissue for real-time
PCR analysis of Target-X using primer probe set RTS2927. Results
are presented as percent inhibition of Target-X mRNA, relative to
PBS control, normalized to RIBOGREEN.RTM. or to the house keeping
gene, GAPDH. As shown in Table 52, treatment with ISIS antisense
oligonucleotides resulted in reduction of Target-X mRNA in
comparison to the PBS control.
TABLE-US-00052 TABLE 52 Percent Inhibition of cynomolgous monkey
Target-X mRNA in the cynomolgus monkey liver relative to the PBS
control ISIS No Motif RTS2927/Ribogreen RTS2927/GAPDH 407935
e5-d(10)-e5 90 90 490279 kdkdk-d(9)-ee 72 66 473589 e5-d(10)-e5 96
96 529804 k-d(10)-kekee 90 87 534796 ekk-d(10)-kke 80 78 540162
eek-d(10)-kke 66 58 540175 eek-d(10)-kke 68 66 540182 eek-d(10)-kke
0 0 540191 eek-d(10)-kke 34 14 e = 2'-MOE, k = cEt, d =
2'-deoxynucleoside
Protein Levels and Activity Analysis
[0826] Plasma Target-X levels were measured prior to dosing, and on
day 3, day 5, day 7, day 16, day 30, day 44, day 65, and day 86 of
treatment. Target-X activity was measured using Target-X deficient
plasma. Approximately 1.5 mL of blood was collected from all
available study animals into tubes containing 3.2% sodium citrate.
The samples were placed on ice immediately after collection.
Collected blood samples were processed to platelet poor plasma and
the tubes were centrifuged at 3,000 rpm for 10 min at 4.degree. C.
to obtain plasma.
[0827] Protein levels of Target-X were measured by a Target-X elisa
kit (purchased from Hyphen BioMed). The results are presented in
Table 53.
TABLE-US-00053 TABLE 53 Plasma Target-X protein levels (% reduction
compared to the baseline) in the cynomolgus monkey plasma Day Day
Day Day Day Day Day Day ISIS No 3 5 7 16 30 44 65 86 407935 21 62
69 82 84 85 84 90 490279 0 29 35 30 38 45 51 58 473589 12 67 85 97
98 98 98 98 529804 19 65 76 87 88 89 90 90 534796 1 46 54 64 64 67
66 70 540162 0 24 26 37 45 49 49 50 540175 0 28 36 38 47 52 55 55
540182 0 17 8 0 0 0 5 0 540191 0 12 4 0 0 4 9 10
Example 40
Single Nucleotide Polymorphisms (SNPs) in the Huntingtin (HTT) Gene
Sequence
[0828] SNP positions (identified by Hayden et al, WO/2009/135322)
associated with the HTT gene were mapped to the HTT genomic
sequence, designated herein as SEQ ID NO: 1 (NT.sub.--006081.18
truncated from nucleotides 1566000 to 1768000). Table 56 provides
SNP positions associated with the HTT gene. Table 56 provides a
reference SNP ID number from the Entrez SNP database at the
National Center for Biotechnology Information (NCBI,
http://www.ncbi.nlm.nih.gov/sites/entrez?db=snp), incorporated
herein by reference. Table 56 furnishes further details on each
SNP. The `Reference SNP ID number` or `RS number` is the number
designated to each SNP from the Entrez SNP database at NCBI,
incorporated herein by reference. `SNP position` refers to the
nucleotide position of the SNP on SEQ ID NO: 1. `Polymorphism`
indicates the nucleotide variants at that SNP position. `Major
allele` indicates the nucleotide associated with the major allele,
or the nucleotide present in a statistically significant proportion
of individuals in the human population. `Minor allele` indicates
the nucleotide associated with the minor allele, or the nucleotide
present in a relatively small proportion of individuals in the
human population.
TABLE-US-00054 TABLE 56 Single Nuclear Polymorphisms (SNPs) and
their positions on SEQ ID NO: 1 SNP Major Minor RS No. position
Polymorphism allele allele rs2857936 1963 C/T C T rs12506200 3707
A/G G A rs762855 14449 A/G G A rs3856973 19826 G/A G A rs2285086
28912 G/A A G rs7659144 37974 C/G C G rs16843804 44043 C/T C T
rs2024115 44221 G/A A G rs10015979 49095 A/G A G rs7691627 51063
A/G G A rs2798235 54485 G/A G A rs4690072 62160 G/T T G rs6446723
66466 C/T T C rs363081 73280 G/A G A rs363080 73564 T/C C T
rs363075 77327 G/A G A rs363064 81063 T/C C T rs3025849 83420 A/G A
G rs6855981 87929 A/G G A rs363102 88669 G/A A G rs11731237 91466
C/T C T rs4690073 99803 A/G G A rs363144 100948 T/G T G rs3025838
101099 C/T C T rs34315806 101687 A/G G A rs363099 101709 T/C C T
rs363096 119674 T/C T C rs2298967 125400 C/T T C rs2298969 125897
A/G G A rs6844859 130139 C/T T C rs363092 135682 C/A C A rs7685686
146795 A/G A G rs363088 149983 A/T A T rs362331 155488 C/T T C
rs916171 156468 G/C c G rs362322 161018 A/G A G rs362275 164255 T/C
C T rs362273 167080 A/G A G rs2276881 171314 G/A G A rs3121419
171910 T/C C T rs362272 174633 G/A G A rs362271 175171 G/A G A
rs3775061 178407 C/T C T rs362310 179429 A/G G A rs362307 181498
T/C C T rs362306 181753 G/A G A rs362303 181960 T/C C T rs362296
186660 C/A C A rs1006798 198026 A/G A G
Example 41
Modified Oligonucleotides Targeting Huntingtin (HTT) Single
Nucleotide Polymorphism (SNP)
[0829] A series of modified oligonucleotides were designed based on
the parent gapmer, ISIS 460209 wherein the central gap region
contains nine 2'-deoxyribonucleosides. These modified
oligonucleotides were designed by introducing various chemical
modifications in the central gap region and were tested for their
ability to selectively inhibit mutant (mut) HTT mRNA expression
levels targeting rs7685686 while leaving the expression of the
wild-type (wt) intact. The activity and selectivity of the modified
oligonucleotides were evaluated and compared to the parent gapmer,
ISIS 460209.
[0830] The modified oligonucleotides were created with a 3-9-3
motif and are described in Table 57. The internucleoside linkages
throughout each gapmer are phosphorothioate (P.dbd.S) linkages. All
cytosine nucleobases throughout each gapmer are 5-methyl cytosines.
Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e", "k", "y", or "z" are sugar modified nucleosides. A
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside, a subscript "k" indicates a 6'-(S)--CH.sub.3 bicyclic
nucleoside (e.g. cEt), a subscript "y" indicates an .alpha.-L-LNA
bicyclic nucleoside and a subscript "z" indicates a F-HNA modified
nucleoside. .sup.pU indicates a 5-propyne uridine nucleoside and
.sup.xT indicates a 2-thio-thymidine nucleoside.
[0831] The number in parentheses indicates the position on the
modified oligonucleotide opposite to the SNP position, as counted
from the 5'-terminus.
Cell Culture and Transfection
[0832] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used (from Coriell
Institute). Cultured GM04022 cells at a density of 25,000 cells per
well were transfected using electroporation with 0.12, 0.37, 1.1,
3.3 and 10 .mu.M concentrations of modified oligonucleotides. After
a treatment period of approximately 24 hours, cells were washed
with DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN and the results are presented
below.
Analysis of IC.sub.50's
[0833] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is presented in Table 58 and was calculated by
plotting the concentrations of oligonucleotides used versus the
percent inhibition of HTT mRNA expression achieved at each
concentration, and noting the concentration of oligonucleotide at
which 50% inhibition of HTT mRNA expression was achieved compared
to the control. The IC.sub.50 at which each oligonucleotide
inhibits the mutant HTT mRNA expression is denoted as `mut
IC.sub.50`. The IC.sub.50 at which each oligonucleotide inhibits
the wild-type HTT mRNA expression is denoted as `wt IC.sub.50`.
Selectivity was calculated by dividing the IC.sub.50 for inhibition
of the wild-type HTT versus the IC.sub.50 for inhibiting expression
of the mutant HTT mRNA.
[0834] The parent gapmer, ISIS 460209 is marked with an asterisk
(*) in the table and was included in the study as a benchmark
oligonucleotide against which the activity and selectivity of the
modified oligonucleotides targeting nucleotides overlapping the SNP
position could be compared.
[0835] As illustrated in Table 58, modified oligonucleotides having
chemical modifications in the central gap region at the SNP
position exhibited similar activity with an increase in selectivity
comparing to the parent gapmer, wherein the central gap region
contains full deoxyribonucleosides.
TABLE-US-00055 TABLE 57 Modified oligonucleotides targeting HTT
rs7685686 Wing SEQ ISIS Gap chemistry ID NO Sequence (5' to 3')
chemistry 5' 3' NO 460209* (8)
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e Full Deoxy ekk
kke 10 539560 (8)
T.sub.eA.sub.kA.sub.kATTG.sup.pUCATCA.sub.kC.sub.kC.sub.e
Deoxy/5-Propyne ekk kke 11 539563 (8)
T.sub.eA.sub.kA.sub.kATTG.sup.xTCATCA.sub.kC.sub.kC.sub.e
Deoxy/2-Thio ekk kke 10 539554 (8)
T.sub.eA.sub.kA.sub.kATTGU.sub.yCATCA.sub.kC.sub.kC.sub.e
Deoxy/.alpha.-L-LNA ekk kke 11 542686 (8)
T.sub.eA.sub.kA.sub.kATTGT.sub.zCATCA.sub.kC.sub.kC.sub.e
Deoxy/F-HNA ekk kke 10 e = 2'-MOE, k = cEt
TABLE-US-00056 TABLE 58 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeted to rs7685686 in GM04022 cells ISIS Mut IC.sub.50 Wt
IC.sub.50 Selectivity Wing chemistry NO (.mu.M) (.mu.M) (mut vs wt)
Gap chemistry 5' 3' 460209* (8) 0.41 2.0 4.9 Full Deoxy ekk kke
539560 (8) 0.29 1.1 3.8 Deoxy/5-Propyne ekk kke 539563 (8) 0.45 3.1
6.9 Deoxy/2-Thio ekk kke 539554 (8) 3.5 >10 >3
Deoxy/.alpha.-L-LNA ekk kke 542686 (8) 0.5 3.1 6.0 Deoxy/F-HNA ekk
kke
Example 42
Modified Oligonucleotides Comprising Chemical Modifications in the
Gap Region Targeting Huntingtin (HTT) Single Nucleotide
Polymorphism (SNP)
[0836] Additional modified oligonucleotides were designed in a
similar manner as the antisense oligonucleotides described in Table
57. Various chemical modifications were introduced in the central
gap region at the SNP position in an effort to improve selectivity
while maintaining activity in reducing mutant HTT mRNA levels.
[0837] The modified oligonucleotides were created with a 3-9-3
motif and are described in Table 59. The internucleoside linkages
throughout each gapmer are phosphorothioate (P.dbd.S) linkages. All
cytosine nucleobases throughout each gapmer are 5-methyl cytosines.
Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "a", "e", "f", "h", "k", "1", "R", "w" are sugar modified
nucleosides. A subscript "a" indicates a 2'-(ara)-F modified
nucleoside, a subscript "e" indicates a 2'-O-methoxyethyl (MOE)
modified nucleoside, a subscript "f" indicates a 2'-F modified
nucleoside, a subscript "h" indicates a HNA modified nucleoside, a
subscript "k" indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside
(e.g. cEt), a subscript "1" indicates a LNA modified nucleoside, a
subscript "R" indicates a 5'-(R)-Me DNA, a subscript "w" indicates
an unlocked nucleic acid (UNA) modified nucleoside. .sup.nT
indicates an N3-ethylcyano thymidine nucleoside and .sup.bN
indicates an abasic nucleoside (e.g. 2'-deoxyribonucleoside
comprising a H in place of a nucleobase). Underlined nucleoside or
the number in parentheses indicates the position on the modified
oligonucleotide opposite to the SNP position, as counted from the
5'-terminus.
Thermal Stability Assay
[0838] The modified oligonucleotides were evaluated in thermal
stability (T.sub.m) assay. The T.sub.m's were measured using the
method described herein. A Cary 100 Bio spectrophotometer with the
Cary Win UV Thermal program was used to measure absorbance vs.
temperature. For the T.sub.m experiments, oligonucleotides were
prepared at a concentration of 8 .mu.M in a buffer of 100 mM Na+,
10 mM phosphate, 0.1 mM EDTA, pH 7. Concentration of
oligonucleotides were determined at 85.degree. C. The
oligonucleotide concentration was 4 .mu.M with mixing of equal
volumes of test oligonucleotide and mutant or wild-type RNA strand.
Oligonucleotides were hybridized with the mutant or wild-type RNA
strand by heating duplex to 90.degree. C. for 5 min and allowed to
cool at room temperature. Using the spectrophotometer, T.sub.m
measurements were taken by heating duplex solution at a rate of 0.5
C/min in cuvette starting @ 15.degree. C. and heating to 85.degree.
C. T.sub.m values were determined using Vant Hoff calculations
(A.sub.260 vs temperature curve) using non self-complementary
sequences where the minimum absorbance which relates to the duplex
and the maximum absorbance which relates to the non-duplex single
strand are manually integrated into the program.
[0839] Presented in Table 60 is the T.sub.m for the modified
oligonucleotides when duplexed to mutant or wild-type RNA
complement. The T.sub.m of the modified oligonucleotides duplexed
with mutant RNA complement is denoted as "T.sub.m (.degree. C.)
mut". The T.sub.m of the modified oligonucleotides duplexed with
wild-type RNA complement is denoted as "T.sub.m (.degree. C.)
wt".
Cell Culture, Transfection and Selectivity Analysis
[0840] The modified oligonucleotides were also tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with a single dose at 2 .mu.M
concentration of the modified oligonucleotide. After a treatment
period of approximately 24 hours, cells were washed with DPBS
buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN. The results in Table 60 are
presented as percent of HTT mRNA expression, relative to untreated
control levels and is denoted as "% UTC". Selectivity as was also
evaluated and measured by dividing the percent of wild-type HTT
mRNA levels vs. the percent of mutant HTT mRNA levels.
[0841] The parent gapmer, ISIS 460209 is marked with an asterisk
(*) in the table and was included in the study as a benchmark
oligonucleotide against which the selectivity of the modified
oligonucleotides targeting nucleotides overlapping the SNP position
could be compared.
[0842] As illustrated in Table 60, improvement in selectivity was
observed for antisense oligonucleotides comprising chemical
modifications in the central gap region at the SNP site such as
5'-(R)-Me (ISIS 539558), HNA (ISIS 539559), and 2'-(ara)-F (ISIS
539565) in comparison to the parent full deoxy gapmer, ISIS 460209.
Modified oligonucleotides comprising LNA (ISIS 539553) or 2'-F
(ISIS 539570) showed comparable selectivity while UNA modification
(ISIS 539556 or 543909) showed no selectivity. Modified
oligonucleotides comprising modified nucleobase, N3-ethylcyano
(ISIS 539564) or abasic nucleobase (ISIS 543525) showed little to
no improvement in selectivity.
TABLE-US-00057 TABLE 59 Modified oligonucleotides comprising
chemical modifications in the central gap region Wing SEQ ISIS
chemistry ID NO Sequence (5' to 3') Gap chemistry 5' 3' NO. 460209*
(8) T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e Full Deoxy
ekk kke 10 539553 (8)
T.sub.eA.sub.kA.sub.kATTGT.sub.lCATCA.sub.kC.sub.kC.sub.e Deoxy/LNA
ekk kke 10 539556 (8)
T.sub.eA.sub.kA.sub.kATTGU.sub.wCATCA.sub.kC.sub.kC.sub.e Deoxy/UNA
ekk kke 11 539558 (8)
T.sub.eA.sub.kA.sub.kATTGT.sub.RCATCA.sub.kC.sub.kC.sub.e
Deoxy/5'-(R)-Me DNA ekk kke 10 539559 (8)
T.sub.eA.sub.kA.sub.kATTGT.sub.hCATCA.sub.kC.sub.kC.sub.e Deoxy/HNA
ekk kke 10 539564 (8)
T.sub.eA.sub.kA.sub.kATTG.sup.nTCATCA.sub.kC.sub.kC.sub.e
Deoxy/deoxy with N3- ekk kke 10 Ethylcyano nucleobase 539565 (8)
T.sub.eA.sub.kA.sub.kATTGT.sub.aCATCA.sub.kC.sub.kC.sub.e
Deoxy/2'-(ara)-F ekk kke 10 539570 (8)
T.sub.eA.sub.kA.sub.kATTGT.sub.fCATCA.sub.kC.sub.kC.sub.e
Deoxy/2'-F ekk kke 10 543525 (8)
T.sub.eA.sub.kA.sub.kATTG.sup.bNCATCA.sub.kC.sub.kC.sub.e
Deoxy/Deoxy-Abasic ekk kke 12 543909 (5)
T.sub.eA.sub.kA.sub.kAU.sub.wTGTCATCA.sub.kC.sub.kC.sub.e Deoxy/UNA
ekk kke 13 e = 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00058 TABLE 60 Comparison of selectivity in inhibition of
HTT mRNA levels and Tm of modified oligonucleotides with ISIS
460209 targeted to rs7685686 in GM04022 cells Wing ISIS Tm
(.degree. C.) % UTC Selectivity chemistry NO mutant wt mutant wt
(wt vs mut) Gap chemistry 5' 3' 460209* (8) 53.7 52.2 23 57 2.4
Full Deoxy ekk kke 539553 (8) 57.7 55.3 54 102 1.9 Deoxy/LNA ekk
kke 539556 (8) 43.7 44.1 90 105 1.2 Deoxy/UNA ekk kke 539558 (8)
51.2 49.7 25 83 3.3 Deoxy/5'-(R)-Me DNA ekk kke 539559 (8) 55.4
50.5 18 62 3.5 Deoxy/HNA ekk kke 539564 (8) 42.8 43.1 86 135 1.6
Deoxy/Deoxy N3- ekk kke ethylcyano nucleobase 539565 (8) 53.8 52.5
14 46 3.4 Deoxy/2'-(ara)-F ekk kke 539570 (8) 54.4 51.8 25 50 2.0
Deoxy/2'-F ekk kke 543525 (8) 43.1 43.8 87 97 1.1 Deoxy/Deoxy
Abasic ekk kke 543909 (5) 44.7 42.1 68 79 1.2 Deoxy/UNA ekk kke e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
Example 43
Chimeric Oligonucleotides Comprising Self-Complementary Regions
Targeting Huntingtin (HTT) Single Nucleotide Polymorphism (SNP)
[0843] Chimeric oligonucleotides were designed based on the parent
gapmer, ISIS 460209. These gapmers comprise self-complementary
regions flanking the central gap region, wherein the central gap
region contains nine deoxyribonucleosides and the
self-complementary regions are complementary to one another. The
underlined nucleosides indicate the portion of the 5'-end that is
self-complement to the portion of the 3'-end.
[0844] The gapmers and their motifs are described in Table 61. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
[0845] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with a single dose at 2 .mu.M
concentration of the modified oligonucleotide. After a treatment
period of approximately 24 hours, cells were washed with DPBS
buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN. The results in Table 62 are
presented as percent of HTT mRNA expression, relative to untreated
control levels and is denoted as "% UTC". Selectivity was also
evaluated and measured by dividing the percent of wild-type HTT
mRNA levels vs. the percent of the mutant HTT mRNA levels.
[0846] The parent gapmer, ISIS 460209 is marked with an asterisk
(*) in the table and was included in the study as a benchmark
oligonucleotide against which the selectivity of the modified
oligonucleotides targeting nucleotides overlapping the SNP position
could be compared.
[0847] As illustrated in Table 62, improvement in selectivity was
observed for chimeric oligonucleotides comprising 5-9-5 (ISIS
550913), 6-9-6 (ISIS 550912), 6-9-3 (ISIS 550907) or 3-9-7 (ISIS
550904) in comparison to the parent gapmer motif, 3-9-3 (ISIS
460209). The remaining gapmers showed moderate to little
improvement in selectivity.
TABLE-US-00059 TABLE 61 Chimeric oligonucleotides comprising
various wing motifs targeted to HTT rs7685686 Wing SEQ ISIS
chemistry ID NO Sequence (5' to 3') Motif 5' 3' NO. 460209*
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 ekk kke
10 544838
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eA.sub.k 3-9-4
ekk kkek 14 544840
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT.sub.kT.sub.kA.-
sub.k 3-9-6 ekk kkekkk 15 544842
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eA.sub.kT.sub.kT.-
sub.kT.sub.kA.sub.k 3-9-8 ekk kkekkkkk 16 550903
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT.sub.kA.sub.k
3-9-5 ekk kkekk 17 550904
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT.sub.kT.sub.kT.-
sub.kA.sub.k 3-9-7 ekk kkekkkk 18 550905
G.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 4-9-3
kekk kke 19 550906
G.sub.kG.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e
5-9-3 kkekk kke 20 550907
G.sub.kG.sub.kT.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kG.sub.kC.-
sub.e 6-9-3 kkkekk kke 21 550908
G.sub.kG.sub.kT.sub.kG.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.-
sub.kC.sub.e 7-9-3 kkkkekk kke 22 550909
G.sub.kG.sub.kT.sub.kG.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.-
sub.kC.sub.kC.sub.e 8-9-3 kkkkkekk kke 23 550910
G.sub.kG.sub.kC.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.-
sub.eG.sub.kC.sub.kC.sub.k 6-9-6 kkkekk kkekkk 24 550911
G.sub.kC.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eG.-
sub.kC.sub.k 5-9-5 kkekk kkekk 25 550912
T.sub.kA.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.-
sub.eT.sub.kT.sub.kA.sub.k 6-9-6 kkkekk kkekkk 26 550913
A.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT.-
sub.kT.sub.k 5-9-5 kkekk kkekk 27 550914
T.sub.kC.sub.kT.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.-
sub.eA.sub.kG.sub.kA.sub.k 6-9-6 kkkekk kkekkk 28 550915
C.sub.kT.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eA.-
sub.kG.sub.k 5-9-5 kkekk kkekk 29 e = 2'-MOE, k = cEt
TABLE-US-00060 TABLE 62 Comparison of selectivity in inhibition of
HTT mRNA levels of chimeric oligonucleotides with ISIS 460209
targeted to rs7685686 in GM04022 cells ISIS % UTC Selectivity wing
chemistry NO mut wt (wt vs. mut) Motif 5' 3' 460209* 23 57 2.4
3-9-3 ekk kke 544838 13 25 2.0 3-9-4 ekk kkek 544840 17 31 1.8
3-9-6 ekk kkekkk 544842 55 102 1.9 3-9-8 ekk kkekkkkk 550903 13 36
2.7 3-9-5 ekk kkekk 550904 23 67 3.0 3-9-7 ekk kkekkkk 550905 21 51
2.4 4-9-3 kekk kke 550906 23 67 2.9 5-9-3 kkekk kke 550907 30 93
3.1 6-9-3 kkkekk kke 550908 60 80 2.4 7-9-3 kkkkekk kke 550909 42
101 2.4 8-9-3 kkkkkekk kke 550910 57 102 1.8 6-9-6 kkkekk kkekkk
550911 18 40 2.2 5-9-5 kkekk kkekk 550912 14 51 3.6 6-9-6 kkkekk
kkekkk 550913 8 36 4.5 5-9-5 kkekk kkekk 550914 29 45 1.5 6-9-6
kkkekk kkekkk 550915 13 28 2.1 5-9-5 kkekk kkekk e = 2'-MOE, k =
cEt
Example 44
Chimeric Antisense Oligonucleotides Comprising
Non-Self-Complementary Regions Targeting Huntingtin (HTT) Single
Nucleotide Polymorphism (SNP)
[0848] Additional gapmers are designed based on the most selective
gapmers from studies described in Tables 61 and 62 (ISIS 550912 and
550913). These gapmers are created such that they cannot form
self-structure in the effort to evaluate if the increased activity
simply is due to higher binding affinity. Gapmers are designed by
deleting two or three nucleotides at the 3'-terminus and are
created with 6-9-3 or 5-9-3 motif.
[0849] The chimeric oligonucleotides and their motifs are described
in Table 63. The internucleoside linkages throughout each gapmer
are phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
[0850] The gapmers, ISIS 550912 and ISIS 550913, from which the
newly designed gapmers are derived from, are marked with an
asterisk (*) in the table.
TABLE-US-00061 TABLE 63 Non-self-complementary chimeric
oligonucleotides targeting HTT SNP Wing SEQ ISIS chemistry ID NO
Sequence (5' to 3') Motif 5' 3' NO. 550912*
T.sub.kA.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC-
.sub.eT.sub.kT.sub.kA.sub.k 6-9-6 kkkekk kkekkk 26 550913*
A.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT-
.sub.kT.sub.k 5-9-5 kkekk kkekk 27 556879
T.sub.kA.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.-
sub.e 6-9-3 kkkekk kke 30 556880
A.sub.kA.sub.kT.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e
5-9-3 kkekk kke 31 e = 2'-MOE, k = cEt
Example 45
Chimeric Oligonucleotides Containing Mismatches Targeting
Huntingtin (HTT) Single Nucleotide Polymorphism (SNP)
[0851] A series of chimeric antisense oligonucleotides were
designed based on the parent gapmer, ISIS 460209, wherein the
central gap region contains nine 2'-deoxyribonucleosides. These
gapmers were designed by introducing modified nucleosides at both
5' and 3' termini. Gapmers were also created with a single mismatch
shifted slightly upstream and downstream (i.e. "microwalk") within
the central gap region and with the SNP position opposite position
5 of the parent gapmer, as counted from the 5'-gap terminus.
[0852] The gapmers and their motifs are described in Table 64. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt). Underlined nucleosides indicate the
mismatch position, as counted from the 5'-gap terminus.
[0853] These gapmers were evaluated for thermal stability (T.sub.m)
using methods described in Example 42. Presented in Table 65 are
the T.sub.m measurements for chimeric antisense oligonucleotides
when duplexed to mutant or wild-type RNA complement. The T.sub.m of
chimeric antisense oligonucleotides duplexed with mutant RNA
complement is denoted as "T.sub.m (.degree. C.) mut". The T.sub.m
of chimeric antisense oligonucleotides duplexed with wild-type RNA
complement is denoted as "T.sub.m (.degree. C.) wt".
[0854] These gapmers were also tested in vitro. Heterozygous
fibroblast GM04022 cell line was used. Cultured GM04022 cells at a
density of 25,000 cells per well were transfected using
electroporation with a single dose at 2 .mu.M concentration of the
modified oligonucleotide. After a treatment period of approximately
24 hours, cells were washed with DPBS buffer and lysed. RNA was
extracted using Qiagen RNeasy purification and mRNA levels were
measured by quantitative real-time PCR using ABI assay
C.sub.--2229297.sub.--10 which measures at dbSNP rs362303. RT-PCR
method in short; A mixture was made using 2020 uL 2.times.PCR
buffer, 101 uL primers (300 uM from ABI), 1000 uL water and 40.4 uL
RT MIX. To each well was added 15 uL of this mixture and 5 uL of
purified RNA. The mutant and wild-type HTT mRNA levels were
measured simultaneously by using two different fluorophores, FAM
for mutant allele and VIC for wild-type allele. HTT mRNA levels
were adjusted according to total RNA content, as measured by
RIBOGREEN. The results in Table 65 are presented as percent of HTT
mRNA expression, relative to untreated control levels and is
denoted as "% UTC". Selectivity was also evaluated and measured by
dividing the percent of wild-type HTT mRNA levels vs. the percent
of mutant HTT mRNA levels.
[0855] The parent gapmer, ISIS 460209 is marked with an asterisk
(*) in the table and was included in the study as a benchmark
oligonucleotide against which the selectivity of the modified
oligonucleotides targeting nucleotides overlapping the SNP position
could be compared.
[0856] As illustrated in Table 65, improvement in selectivity was
observed for gapmers comprising a 4-9-4 motif with a central deoxy
gap region (ISIS 476333) or a single mismatch at position 8 within
the gap region (ISIS 543531) in comparison to the parent gapmer.
The remaining gapmers showed moderate to little improvement in
selectivity.
TABLE-US-00062 TABLE 64 Chimeric oligonucleotides containing a
single mismatch targeting mutant HTT SNP Wing SEQ ISIS Mismatch
chemistry ID NO Sequence (5' to 3') position Motif 5' 3' NO.
460209* T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e --
3-9-3 ekk kke 10 476333
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e
-- 4-9-4 ekek keke 32 543526
A.sub.eT.sub.kA.sub.eA.sub.kATTCTCATCA.sub.kC.sub.eC.sub.kA.sub.e 4
4-9-4 ekek keke 33 543527
A.sub.eT.sub.kA.sub.eA.sub.kATAGTCATCA.sub.kC.sub.eC.sub.kA.sub.e 3
4-9-4 ekek keke 34 543529
A.sub.eT.sub.kA.sub.eA.sub.kATTGTGATCA.sub.kC.sub.eC.sub.kA.sub.e 6
4-9-4 ekek keke 35 543530
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCTTCA.sub.kC.sub.eC.sub.kA.sub.e 7
4-9-4 ekek keke 36 543531
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCAACA.sub.kC.sub.eC.sub.kA.sub.e 8
4-9-4 ekk keke 37 543532
T.sub.eA.sub.kA.sub.kATTCTCATCA.sub.kC.sub.kC.sub.e 4 3-9-3 ekk kke
38 543534 T.sub.eA.sub.kA.sub.kAATGTCATCA.sub.kC.sub.kC.sub.e 2
3-9-3 ekk kke 39 543535
T.sub.eA.sub.kA.sub.kATTGTGATCA.sub.kC.sub.kC.sub.e 6 3-9-3 ekk kke
40 543536 T.sub.eA.sub.kA.sub.kATTGTCTTCA.sub.kC.sub.kC.sub.e 7
3-9-3 ekk kke 41 543537
T.sub.eA.sub.kA.sub.kATTGTCAACA.sub.kC.sub.kC.sub.e 8 3-9-3 ekk kke
42 e = 2'-MOE, k = cEt
TABLE-US-00063 TABLE 65 Comparison of selectivity and T.sub.m of
chimeric oligonucleotides with ISIS 460209 targeted to rs7685686 in
GM04022 cells ISIS Tm (.degree. C.) % UTC Selectivity Mismatch Wing
chemistry NO mut wt mut wt (wt vs mut) position Motif 5' 3' 460209*
53.7 52.2 23 57 2.4 -- 3-9-3 ekk kke 476333 60.2 58.4 10 37 3.6 --
4-9-4 ekek keke 543526 47.9 46.6 70 86 1.2 4 4-9-4 ekek keke 543527
52.6 49.9 40 103 2.6 3 4-9-4 ekek keke 543529 50.3 49.0 66 102 1.5
6 4-9-4 ekek keke 543530 52.9 50.9 67 110 1.6 7 4-9-4 ekek keke
543531 53.3 50.3 46 136 3.0 8 4-9-4 ekk keke 543532 43.6 42.8 127
151 1.2 4 3-9-3 ekk kke 543534 45.9 43.8 67 95 1.4 2 3-9-3 ekk kke
543535 44.0 43.3 96 113 1.2 6 3-9-3 ekk kke 543536 46.8 44.6 106
104 1.0 7 3-9-3 ekk kke 543537 45.9 44.3 77 81 1.1 8 3-9-3 ekk kke
e = 2'-MOE, k = cEt
Example 46
Chimeric Oligonucleotides Comprising Mismatches Targeting
Huntingtin (HTT) Single Nucleotide Polymorphism (SNP)
[0857] Additional chimeric antisense oligonucleotides are designed
based on two gapmers selected from studies described in Tables 64
and 65 (ISIS 476333 and ISIS 460209) wherein the central gap region
contains nine 2'-deoxyribonucleosides. These gapmers are designed
by introducing a single mismatch, wherein the mismatch will be
shifted throughout the antisense oligonucleotide (i.e.
"microwalk"). Gapmers are also created with 4-9-4 or 3-9-3 motifs
and with the SNP position opposite position 8 of the original
gapmers, as counted from the 5'-terminus.
[0858] The gapmers and their motifs are described in Table 66. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt). Underlined nucleosides indicate the
mismatch position, as counted from the 5'-terminus.
[0859] The gapmers, ISIS 476333 and ISIS 460209, in which the newly
designed antisense oligonucleotides are derived from, are marked
with an asterisk (*) in the table.
TABLE-US-00064 TABLE 66 Chimeric oligonucleotides comprising
mismatches targeting HTT SNP Wing SEQ ISIS Mismatch chemistry ID NO
Sequence (5' to 3') position Motif 5' 3' NO 476333*
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e
-- 4-9-4 ekek keke 32 554209
T.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e 1
4-9-4 ekek keke 43 554210
A.sub.eA.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e 2
4-9-4 ekek keke 44 554211
A.sub.eT.sub.kT.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e 3
4-9-4 ekek keke 45 554212
A.sub.eT.sub.kA.sub.eT.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e 4
4-9-4 ekek keke 46 554213
A.sub.eT.sub.kA.sub.eA.sub.kTTTGTCATCA.sub.kC.sub.eC.sub.kA.sub.e 5
4-9-4 ekek keke 47 554214
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATGA.sub.kC.sub.eC.sub.kA.sub.e
13 4-9-4 ekek keke 48 554215
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCT.sub.kC.sub.eC.sub.kA.sub.e
14 4-9-4 ekek keke 49 554216
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kG.sub.eC.sub.kA.sub.e
15 4-9-4 ekek keke 50 554217
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eG.sub.kA.sub.e
16 4-9-4 ekek keke 51 554218
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eC.sub.kT.sub.e
17 4-9-4 ekek keke 52 460209*
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e -- 3-9-3 ekk
kke 10 562481 T.sub.eA.sub.kA.sub.kGTTGTCATCA.sub.kC.sub.kC.sub.e 4
3-9-3 ekk kke 53 554482
T.sub.eA.sub.kA.sub.kAGTGTCATCA.sub.kC.sub.kC.sub.e 5 3-9-3 ekk kke
54 554283 T.sub.eA.sub.kA.sub.kATGGTCATCA.sub.kC.sub.kC.sub.e 6
3-9-3 ekk kke 55 e = 2'-MOE, k = cEt
Example 47
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0860] Chimeric antisense oligonucleotides were designed based on
the parent gapmer, ISIS 460209, wherein the central gap region
contains nine 2'-deoxyribonucleosides. These gapmers were designed
by shortening the central gap region to seven
2'-deoxyribonucleosides. Gapmers were also created with 5-7-5 motif
and with the SNP position opposite position 8 or 9 of the parent
gapmer, as counted from the 5'-terminus.
[0861] The gapmers and their motifs are described in Table 67. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt). Underlined nucleoside or the number
in parentheses indicates the position on the modified
oligonucleotide opposite to the SNP position, as counted from the
5'-terminus.
[0862] The chimeric antisense oligonucleotides were tested in
vitro. ISIS 141923 was included in the study as a negative control
and is denoted as "neg control". A non-allele specific antisense
oligonucleotide, ISIS 387916 was used as a positive control and is
denoted as "pos control". ISIS 460209 was included in the study for
comparison. Heterozygous fibroblast GM04022 cell line was used.
Cultured GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3, and 10
.mu.M concentration of the modified oligonucleotide. After a
treatment period of approximately 24 hours, cells were washed with
DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN and the results are presented in
Table 68.
[0863] The IC.sub.50 and selectivity were calculated using methods
described previously in Example 41. As illustrated in Table 68, no
improvement in potency and selectivity was observed for the
chimeric antisense oligonucleotides as compared to ISIS 460209.
TABLE-US-00065 TABLE 67 Chimeric antisense oligonucleotides
targeting HTT rs7685686 Wing SEQ ISIS Chemistry ID NO Sequence (5'
to 3') Motif 5' 3' NO. 460209* (8)
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 ekk kke
10 460085 (9)
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.sub.e-
C.sub.eA.sub.e 5-7-5 eeeee eeeee 32 540108 (9)
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGTCATC.sub.kA.sub.kC.sub.e-
C.sub.eA.sub.e 5-7-5 eeekk kkeee 32 387916
T.sub.eC.sub.eT.sub.eC.sub.eT.sub.eATTGCACATTC.sub.eC.sub.eA.sub.eA-
.sub.eG.sub.e 5-10-5 eeeee eeeee 56 (pos control) 141923
C.sub.eC.sub.eT.sub.eT.sub.eC.sub.eCCTGAAGGTTC.sub.eC.sub.eT.sub.eC-
.sub.eC.sub.e 5-10-5 eeeee eeeee 57 (neg control) e = 2'-MOE, k =
cEt
TABLE-US-00066 TABLE 68 Comparison of inhibition of HTT mRNA levels
and selectivity of chimeric antisense oligonucleotides with ISIS
460209 targeted to rs7685686 in GM04022 cells Wing Mut IC.sub.50 Wt
IC.sub.50 Selectivity chemistry ISIS NO (.mu.M) (.mu.M) (mut vs wt)
Motif 5' 3' 460209* (8) 0.41 2.0 4.9 3-9-3 ekk kke 460085 (9) 3.5
>10 >3 5-7-5 eeeee eeeee 540108 (9) 0.41 -- -- 5-7-5 eeekk
kkeee 387916 0.39 0.34 1.0 5-10-5 eeeee eeeee (pos control) 141923
>10 >10 -- 5-10-5 eeeee eeeee (neg control) e = 2'-MOE, k =
cEt
Example 48
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0864] Additional chimeric antisense oligonucleotides were designed
based on the parent gapmer, ISIS 460209, wherein the central gap
region contains nine 2'-deoxyribonucleosides. These gapmers were
designed with the central gap region shortened or interrupted by
introducing various modifications either within the gap or by
adding one or more modified nucleosides to the 3'-most 5'-region or
to the 5'-most 3'-region. Gapmers were created with the SNP
position opposite position 8 of the parent gapmer, as counted from
the 5'-terminus.
[0865] The gapmers and their motifs are described in Table 69. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
[0866] The chimeric antisense oligonucleotides were tested in
vitro. Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 2 .mu.M concentration of the
modified oligonucleotide. After a treatment period of approximately
24 hours, cells were washed with DPBS buffer and lysed. RNA was
extracted using Qiagen RNeasy purification and mRNA levels were
measured by quantitative real-time PCR using ABI assay
C.sub.--2229297.sub.--10 which measures at dbSNP rs362303. RT-PCR
method in short; A mixture was made using 2020 uL 2.times.PCR
buffer, 101 uL primers (300 uM from ABI), 1000 uL water and 40.4 uL
RT MIX. To each well was added 15 uL of this mixture and 5 uL of
purified RNA. The mutant and wild-type HTT mRNA levels were
measured simultaneously by using two different fluorophores, FAM
for mutant allele and VIC for wild-type allele. HTT mRNA levels
were adjusted according to total RNA content, as measured by
RIBOGREEN. The results in Table 70 are presented as percent of HTT
mRNA expression, relative to untreated control levels and is
denoted as "% UTC". Selectivity was also evaluated and measured by
dividing the percent of wild-type HTT mRNA levels vs. the percent
of mutant HTT mRNA levels. ISIS 460209 marked with an asterisk (*)
in the table was included in the study for comparison.
[0867] As illustrated in Table 70, modifications to the 3'-most
5'-region nucleosides that shorten the gap from 9 to 7 or 8
nucleotides (ISIS 551429 and ISIS 551426) improved selectivity and
potency comparing to the parent gapmer (ISIS 460209). The remaining
chimeric antisense oligonucleotides showed moderate to little
improvement in selectivity.
TABLE-US-00067 TABLE 69 Short-gap antisense oligonucleotides
targeting HTT rs7685686 Wing SEQ ISIS Chemistry ID NO Sequence (5'
to 3') Motif 5' 3' NO. 460209*
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 ekk kke
10 551426 T.sub.eA.sub.kA.sub.eA.sub.kTTGTCATCA.sub.kC.sub.kC.sub.e
4-8-3 ekek kke 10 551427
T.sub.eA.sub.kA.sub.eAT.sub.kTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 or
eke or kke 10 5-7-3 ekedk 551428
T.sub.eA.sub.kA.sub.eATT.sub.kGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 or
eke or kke 10 6-6-3 ekeddk 551429
T.sub.eA.sub.eA.sub.eA.sub.kT.sub.kTGTCATCA.sub.kC.sub.kC.sub.e
5-7-3 eeekk kke 10 e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
TABLE-US-00068 TABLE 70 Comparison of selectivity in inhition of
HTT mRNA levels of antisense oligonucleotides with ISIS 460209
targeted to rs7685686 in GM4022 cells % UTC Selectivity Wing
chemistry ISIS NO mut wt (wt vs. mut) Motif 5' 3' 460209* 23 57 2.4
3-9-3 ekk kke 551426 14 66 4.8 4-8-3 ekek kke 551427 35 97 2.8
3-9-3 or eke or kke 5-7-3 ekedk 551428 61 110 1.8 3-9-3 or eke or
kke 6-6-3 ekeddk 551429 19 94 5.0 5-7-3 eeekk kke e = 2'-MOE, k =
cEt, d = 2'-deoxyribonucleoside
Example 49
Modified Oligonucleotides Targeting HTT SNP
[0868] A series of modified antisense oligonucleotides are designed
based on the parent gapmer, ISIS 460209, wherein the central gap
region contains nine 2'-deoxynucleosides and is marked with an
asterisk (*) in the table. These modified oligonucleotides are
designed by shortening or interrupting the gap with a single
mismatch or various chemical modifications within the central gap
region. The modified oligonucleotides are created with the SNP
position opposite position 8 of the parent gapmer, as counted from
the 5'-terminus.
[0869] The gapmers and their motifs are described in Table 71. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages, except for the internucleoside
linkage with a subscript "p", "pz" or "pw". Subscript "p" indicates
methyl phosphonate internucleoside linkage. Subscript "pz"
indicates (R)-methyl phosphonate internucleoside linkage. Subscript
"pw" indicates (S)-methyl phosphonate internucleoside linkage. All
cytosine nucleobases throughout each gapmer are 5-methyl cytosines.
.sup.xT indicates a 2-thio thymidine nucleoside. Nucleosides
without a subscript are .beta.-D-2'-deoxyribonucleosides.
Nucleosides followed by a subscript "e", "k" or "b" are sugar
modified nucleosides. A subscript "e" indicates a 2'-O-methoxyethyl
(MOE) modified nucleoside, a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt) and a subscript "b"
indicates a 5'-Me DNA modified nucleoside. Underlined nucleosides
indicate the position of modification. Bold and underlined
nucleosides indicate the mismatch position.
TABLE-US-00069 TABLE 71 Short-gap chimeric oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap Chemistry ID NO (5' to
3') Motif Chemistry 5' 3' NO. 460209* T.sub.eA.sub.kA.sub.kATTGTC
3-9-3 -- ekk kke 10 ATCA.sub.kC.sub.kC.sub.e XXXX16
T.sub.eA.sub.kA.sub.kA.sup.xTTGT 3-9-3 Deoxy/2-thio ekk kke 10
CATCA.sub.kC.sub.kC.sub.e XXXX17 T.sub.eA.sub.kA.sub.kAT.sup.xTGT
3-9-3 Deoxy/2-thio ekk kke 10 CATCA.sub.kC.sub.kC.sub.e XXXX18
T.sub.eA.sub.kA.sub.kA.sup.xT.sup.xTGT 3-9-3 Deoxy/2-thio ekk kke
10 CATCA.sub.kC.sub.kC.sub.e XXXX19
T.sub.eA.sub.kA.sub.kATT.sub.pGT 3-9-3 Deoxy/Methyl ekk kke 10
(558257) CATCA.sub.kC.sub.kC.sub.e phosphonate XXXX20
T.sub.eA.sub.kA.sub.kAT.sub.pTGT 3-9-3 Deoxy/Methyl ekk kke 10
(558256) CATCA.sub.kC.sub.kC.sub.e phosphonate XXXX20a
T.sub.eA.sub.kA.sub.kAT.sub.pzTGT 3-9-3 Deoxy/(R)- ekk kke 10
CATCA.sub.kC.sub.kC.sub.e Methyl phosphonate XXXX20b
T.sub.eA.sub.kA.sub.kAT.sub.pwTG 3-9-3 Deoxy/(S)- ekk kke 10
TCATCA.sub.kC.sub.kC.sub.e Methyl phosphonate XXXX21
T.sub.eA.sub.kA.sub.kA.sub.pTTGT 3-9-3 Methyl ekk kke 10 (558255)
CATCA.sub.kC.sub.kC.sub.e phosphonate XXXX22
T.sub.eA.sub.kA.sub.kATT.sub.bGT 3-9-3 5'-Me-DNA ekk kke 10
CATCA.sub.kC.sub.kC.sub.e XXXX23 T.sub.eA.sub.kA.sub.kAT.sub.bTGT
3-9-3 5'-Me-DNA ekk kke 10 CATCA.sub.kC.sub.kC.sub.e XXXX24
T.sub.eA.sub.kA.sub.kA.sub.bTTGT 3-9-3 5'-Me-DNA ekk kke 10
CATCA.sub.kC.sub.kC.sub.e XXXX25 T.sub.eA.sub.kA.sub.kGTTGTC 4-8-3
Mismatch at ekk kke 53 ATCA.sub.kC.sub.kC.sub.e position 4 XXXX26
T.sub.eA.sub.kA.sub.kAGTGT 5-7-3 Mismatch at ekk kke 54
CATCA.sub.kC.sub.kC.sub.e position 5 XXXX27
T.sub.eA.sub.kA.sub.kATGGT 6-6-3 Mismatch at ekk kke 55
CATCA.sub.kC.sub.kC.sub.e position 6 e = 2'-MOE, k = cEt
Example 50
Short-Gap Chimeric Oligonucleotides Comprising Modifications at the
Wing Regions Targeting Huntingtin (HTT) Single Nucleotide
Polymorphism (SNP)
[0870] Additional chimeric antisense oligonucleotides were designed
based on the parent gapmer, ISIS 460209, wherein the central gap
region contains nine 2'-deoxynucleosides. These gapmers were
designed by shortening the central gap region to seven
2'-deoxynucleosides and introducing various modifications at the
wing regions.
[0871] The gapmers and their motifs are described in Table 72. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
[0872] The number in parentheses indicates the position on the
chimeric oligonucleotide opposite to the SNP position, as counted
from the 5'-terminus.
[0873] These gapmers were evaluated for thermal stability (T.sub.m)
using methods described in Example 42. Presented in Table 73 is the
T.sub.m measurements for chimeric antisense oligonucleotides when
duplexed to mutant or wild-type RNA complement. The T.sub.m of
chimeric antisense oligonucleotides duplexed with mutant RNA
complement is denoted as "T.sub.m (.degree. C.) mut". The T.sub.m
of chimeric antisense oligonucleotides duplexed with wild-type RNA
complement is denoted as "T.sub.m (.degree. C.) wt".
[0874] These gapmers were also tested in vitro. Heterozygous
fibroblast GM04022 cell line was used. Cultured GM04022 cells at a
density of 25,000 cells per well were transfected using
electroporation with a single dose at 2 .mu.M concentration of the
modified oligonucleotide. After a treatment period of approximately
24 hours, cells were washed with DPBS buffer and lysed. RNA was
extracted using Qiagen RNeasy purification and mRNA levels were
measured by quantitative real-time PCR using ABI assay
C.sub.--2229297.sub.--10 which measures at dbSNP rs362303. RT-PCR
method in short; A mixture was made using 2020 uL 2.times.PCR
buffer, 101 uL primers (300 uM from ABI), 1000 uL water and 40.4 uL
RT MIX. To each well was added 15 uL of this mixture and 5 uL of
purified RNA. The mutant and wild-type HTT mRNA levels were
measured simultaneously by using two different fluorophores, FAM
for mutant allele and VIC for wild-type allele. HTT mRNA levels
were adjusted according to total RNA content, as measured by
RIBOGREEN. The results in Table 73 are presented as percent of HTT
mRNA expression, relative to untreated control levels and is
denoted as "% UTC". Selectivity was also evaluated and measured by
dividing the percent of wild-type HTT mRNA levels vs. the percent
of mutant HTT mRNA levels. ISIS 460209 marked with an asterisk (*)
in the table was included in the study for comparison.
[0875] As illustrated in Table 73, improvement in selectivity was
observed for gapmers comprising 2-7-8 or 5-7-5 motifs having cEt
subunits at the wing regions in comparison to the parent gapmer,
ISIS 460209. The remaining gapmers showed moderate to little
improvement in selectivity.
TABLE-US-00070 TABLE 72 Short-gap chimeric oligonucleotides
comprising wing modifications wing SEQ ISIS chemistry ID NO
Sequence (5' to 3') Motif 5' 3' NO. 460209* (8)
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 ekk kke
10 540103 (6)
A.sub.kA.sub.kTTGTCATC.sub.eA.sub.eC.sub.eC.sub.eA.sub.eG.sub.e-
A.sub.eA.sub.e 2-7-8 kk e8 58 540104(6)
A.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.sub.eC.sub.eA.sub.eG.sub.e-
A.sub.eA.sub.e 2-7-8 ee e8 59 540105 (7)
A.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.sub.eC.sub.eA.sub.e-
G.sub.eA.sub.e 3-7-7 eee e7 60 540106 (8)
T.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.sub.eC.sub.e-
A.sub.eG.sub.e 4-7-6 eeee e6 61 540107 (9)
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.kTTGTCATC.sub.kA.sub.eC.sub.e-
C.sub.eA.sub.e 5-7-5 eeeek keeee 32 540109 (10)
A.sub.eA.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.sub.eC.s-
ub.e 6-7-4 e6 e4 62 540110 (11)
T.sub.eA.sub.eA.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.s-
ub.e 7-7-3 e7 eee 63 540111 (12)
T.sub.eT.sub.eA.sub.eA.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.s-
ub.e 8-7-2 e8 ee 64 540112 (12)
T.sub.eT.sub.eA.sub.eA.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.kA.s-
ub.k 8-7-2 e8 kk 64 e = 2'-MOE (e.g. e6 = eeeeee), and k = cEt
TABLE-US-00071 TABLE 73 Comparison of selectivity in inhibition of
HTT mRNA levels of antisense oligonucleotides with ISIS 460209
targeted to RS7685686 in GM04022 cells Selec- Tm tivity wing
(.degree. C.) % UTC (wt vs chemistry ISIS NO mut wt mut wt mut)
Motif 5' 3' 460209* (8) 53.7 52.2 23 57 2.4 3-9-3 ekk kke 540103
(6) 57.6 56.4 23 74 3.3 2-7-8 kk e8 540104 (6) 54.8 52.8 36 91 2.5
2-7-8 ee e8 540105 (7) 54.2 52.2 53 135 2.6 3-7-7 eee e7 540106 (8)
52.4 50.8 30 77 2.6 4-7-6 eeee e6 540107 (9) 56.6 54.7 19 62 3.3
5-7-5 eeeek keeee 540109 (10) 49.1 47.3 78 127 1.6 6-7-4 e6 e4
540110 (11) 42.8 41.2 89 112 1.3 7-7-3 e7 eee 540111 (12) 39.0 36.9
111 128 1.1 8-7-2 e8 ee 540112 (12) 44.2 42.4 86 102 1.2 8-7-2 e8
kk
Example 51
Chimeric Oligonucleotides with SNP Site Shifting within the Central
Gap Region
[0876] Chimeric antisense oligonucleotides were designed based on
the parent gapmer, ISIS 460209 wherein the SNP site aligns with
position 5 of the parent gapmer, as counted from the 5'-gap
terminus. These gapmers were designed by shifting the SNP site
upstream or downstream (i.e. microwalk) within the central gap
region of the parent gapmer.
[0877] The gapmers and their motifs are described in Table 74. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt). Underline nucleosides indicate the
position on the chimeric oligonucleotide aligns with the SNP
site.
[0878] The SNP site indicates the position on the chimeric
antisense oligonucleotide opposite to the SNP position, as counted
from the 5'-gap terminus and is denoted as "SNP site".
[0879] The chimeric oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN. ISIS 460209 marked
with an asterisk (*) in the table was included in the study for
comparison.
[0880] The IC.sub.50 and selectivity were calculated using the
methods previously described in Example 41. As illustrated in Table
75, chimeric oligonucleotides comprising 4-9-2 (ISIS 540082) or
2-9-4 (ISIS 540095) motif with the SNP site at position 1 or 3
showed comparable activity and 2.5 fold selectivity as compared to
their counterparts.
TABLE-US-00072 TABLE 74 Chimeric oligonucleotides designed by
microwalk wing SEQ ISIS SNP chemistry ID NO Sequence (5' to 3')
Motif site 5' 3' NO. 460209*
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 5 ekk kke
10 540082 A.sub.eT.sub.kT.sub.kG.sub.kTCATCACCAG.sub.kA.sub.e 4-9-2
1 ekkk ke 65 540089
T.sub.eT.sub.kA.sub.kA.sub.kTAAATTGTCA.sub.kT.sub.e 4-9-2 8 ekkk ke
66 540095 A.sub.eT.sub.kTGTCATCACC.sub.kA.sub.kG.sub.kA.sub.e 2-9-4
3 ek kkke 65 e = 2'-MOE, and k = cEt
TABLE-US-00073 TABLE 75 Comparison of inhibition of HTT mRNA levels
and selectivity of chimeric oligonucleotides with ISIS 460209
targeted to HTT SNP Mut Wing IC.sub.50 Wt IC.sub.50 Selectivity SNP
chemistry ISIS NO (.mu.M) (.mu.M) (wt vs mut) Motif site 5' 3'
460209 0.41 2.0 4.9 3-9-3 5 ekk kke 540082 0.45 5.6 12 4-9-2 1 ekkk
ke 540089 >10 >10 -- 4-9-2 8 ekkk ke 540095 0.69 8.4 12 2-9-4
3 ek kkke e = 2'-MOE, and k = cEt
Example 52
Chimeric Oligonucleotides with SNP Site Shifting at Various
Positions
[0881] Chimeric antisense oligonucleotides were designed based on
the parent gapmer, ISIS 460209 wherein the SNP site aligns with
position 8 of the parent gapmer, as counted from the 5'-terminus.
These gapmers were designed by shifting the SNP site upstream or
downstream (i.e. microwalk) of the original oligonucleotide.
[0882] The gapmers and their motifs are described in Table 76. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt). Underline nucleosides indicate the
SNP site.
[0883] The SNP site indicates the position on the chimeric
antisense oligonucleotide opposite to the SNP position, as counted
from the 5'-terminus and is denoted as "SNP site".
[0884] The chimeric oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, cells were washed with
DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN. The results in Table 77 are
presented as percent of HTT mRNA expression, relative to untreated
control levels and is denoted as "% UTC". Selectivity was also
evaluated and measured by dividing the percent of wild-type HTT
mRNA levels vs. the percent of mutant HTT mRNA levels.
[0885] The parent gapmer, ISIS 460209 is marked with an asterisk
(*) in the table and was included in the study as a benchmark
oligonucleotide against which the selectivity of the modified
oligonucleotides targeting nucleotides overlapping the SNP position
could be compared.
[0886] As illustrated in Table 77, improvement in potency and
selectivity was observed for chimeric oligonucleotides comprising
4-9-2 or 2-9-4 motif having the target SNP site at positions 3, 4,
6, 7 and 8 (ISIS540083, ISIS540084, ISIS 540085, ISIS 540094, ISIS
540096, ISIS 540097 and ISIS 540098) in comparison to position 8 of
the parent gapmer (ISIS 460209). The remaining gapmers showed
little to no improvement in potency or selectivity.
TABLE-US-00074 TABLE 76 Chimeric oligonucleotides designed by
microwalk SEQ ISIS SNP ID NO Sequence (5' to 3') site Motif NO.
460209* T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 8 3-9-3
10 (ekk- d9- kke) 543887
T.sub.eT.sub.kG.sub.kT.sub.kCATCACCAGA.sub.kA.sub.e 4 4-9-2 67
(ekkk- d9-ke) 540083
A.sub.eA.sub.kT.sub.kT.sub.kGTCATCACCA.sub.kG.sub.e 6 4-9-2 68
(ekkk- d9-ke) 540084
A.sub.eA.sub.kA.sub.kT.sub.kTGTCATCACC.sub.kA.sub.e 7 4-9-2 69
(ekkk- d9-ke) 540085
T.sub.eA.sub.kA.sub.kA.sub.kTTGTCATCAC.sub.kC.sub.e 8 4-9-2 10
(ekkk- d9-ke) 540087
A.sub.eA.sub.kT.sub.kA.sub.kAATTGTCATC.sub.kA.sub.e 10 4-9-2 70
(ekkk- d9-ke) 540090
A.sub.eT.sub.kT.sub.kA.sub.kATAAATTGTC.sub.kA.sub.e 13 4-9-2 71
(ekkk- d9-ke) 540091
T.sub.eA.sub.kT.sub.kT.sub.kAATAAATTGT.sub.kC.sub.e 14 4-9-2 72
(ekkk- d9-ke) 540092
G.sub.eT.sub.kCATCACCAGA.sub.kA.sub.kA.sub.kA.sub.e 2 2-9-4 73 (ek-
d9- kkke) 540093
T.sub.eG.sub.kTCATCACCAG.sub.kA.sub.kA.sub.kA.sub.e 3 2-9-4 74 (ek-
d9- kkke) 540094
T.sub.eT.sub.kGTCATCACCA.sub.kG.sub.kA.sub.kA.sub.e 4 2-9-4 67 (ek-
d9- kkke) 540096
A.sub.eA.sub.kTTGTCATCAC.sub.kC.sub.kA.sub.kG.sub.e 6 2-9-4 68 (ek-
d9- kkke) 540097
A.sub.eA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.kA.sub.e 8 2-9-4 69 (ek-
d9- kkke) 540098
T.sub.eA.sub.kAATTGTCATC.sub.kA.sub.kC.sub.kC.sub.e 8 2-9-4 10 (ek-
d9- kkke) 540099
A.sub.eT.sub.kAAATTGTCAT.sub.kC.sub.kA.sub.kC.sub.e 9 2-9-4 75 (ek-
d9- kkke) 540100
A.sub.eA.sub.kTAAATTGTCA.sub.kT.sub.kC.sub.kA.sub.e 10 2-9-4 70
(ek- d9- kkke) 540101
T.sub.eA.sub.kATAAATTGTC.sub.kA.sub.kT.sub.kC.sub.e 11 2-9-4 76
(ek- d9- kkke) 540102
T.sub.eT.sub.kAATAAATTGT.sub.kC.sub.kA.sub.kT.sub.e 12 2-9-4 66
(ek- d9- kkke) e = 2'-MOE; k = cEt; d = 2'-deoxyribonucleoside
TABLE-US-00075 TABLE 77 Comparison of selectivity in HTT SNP
inhibition of chimeric oligonucleotides with ISIS 460209 % UTC
Selectivity SNP ISIS NO mut wt (wt vs. mut) site Motif 460209* 23
57 2.4 8 3-9-3 (ekk-d9-kke) 543887 18 43 2.3 4 4-9-2 (ekkk-d9-ke)
540083 18 67 3.7 6 4-9-2 (ekkk-d9-ke) 540084 10 49 4.9 7 4-9-2
(ekkk-d9-ke) 540085 21 86 4.1 8 4-9-2 (ekkk-d9-ke) 540087 60 98 1.6
10 4-9-2 (ekkk-d9-ke) 540090 129 137 1.1 13 4-9-2 (ekkk-d9-ke)
540091 93 105 1.1 14 4-9-2 (ekkk-d9-ke) 540092 28 55 2.0 2 2-9-4
(ek-d9-kkke) 540093 18 62 3.4 3 2-9-4 (ek-d9-kkke) 540094 13 45 3.4
4 2-9-4 (ek-d9-kkke) 540096 17 68 4.0 6 2-9-4 (ek-d9-kkke) 540097 8
35 4.2 8 2-9-4 (ek-d9-kkke) 540098 12 45 3.9 8 2-9-4 (ek-d9-kkke)
540099 62 91 1.5 9 2-9-4 (ek-d9-kkke) 540100 80 106 1.3 10 2-9-4
(ek-d9-kkke) 540101 154 152 1.0 11 2-9-4 (ek-d9-kkke) 540102 102
106 1.0 12 2-9-4 (ek-d9-kkke) e = 2'-MOE; k = cEt; d =
2'-deoxyribonucleoside
Example 53
Selectivity in Inhibition of HTT mRNA Levels Targeting SNP by
Chimeric Oligonucleotides Designed by Microwalk
[0887] A series of modified oligonucleotides were designed based on
the parent gapmer, ISIS 460209, wherein the central gap region
comprises nine 2'-deoxyribonucleosides. These gapmers were created
with various motifs and modifications at the wings and/or the
central gap region.
[0888] The modified oligonucleotides and their motifs are described
in Table 78. The internucleoside linkages throughout each gapmer
are phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e", "k", "y", or "z" are sugar modified
nucleosides. A subscript "e" indicates a 2'-O-methoxyethyl (MOE)
modified nucleoside, a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt), a subscript "y" indicates an
.alpha.-L-LNA modified nucleoside, and a subscript "z" indicates a
F-HNA modified nucleoside. .sup.pU indicates a 5-propyne uridine
nucleoside and .sup.xT indicates a 2-thio-thymidine nucleoside.
Underlined nucleosides indicate the mismatch position.
[0889] These gapmers were evaluated for thermal stability (T.sub.m)
using methods described in Example 42. Presented in Table 79 are
the T.sub.m measurements for chimeric antisense oligonucleotides
when duplexed to mutant or wild-type RNA complement. The T.sub.m of
chimeric antisense oligonucleotides duplexed with mutant RNA
complement is denoted as "T.sub.m (.degree. C.) mut". The T.sub.m
of chimeric antisense oligonucleotides duplexed with wild-type RNA
complement is denoted as "T.sub.m (.degree. C.) wt".
[0890] These gapmers were also tested in vitro. ISIS 141923 was
included in the study as a negative control and is denoted as "neg
control". The non-allele specific antisense oligonucleotides, ISIS
387916 was used as a positive control and is denoted as "pos
control". Heterozygous fibroblast GM04022 cell line was used.
Cultured GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with a single dose at 2 .mu.M
concentration of the modified oligonucleotide. After a treatment
period of approximately 24 hours, cells were washed with DPBS
buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN. ISIS 460209 marked with an
asterisk (*) in the table was included in the study for comparison.
The results in Table 79 are presented as percent of HTT mRNA
expression, relative to untreated control levels and is denoted as
"% UTC". Selectivity was also evaluated and measured by dividing
the percent of wild-type HTT mRNA levels vs. the percent of mutant
HTT mRNA levels.
[0891] As illustrated, several of the newly designed antisense
oligonucleotides showed improvement in potency and/or selectivity
in inhibiting mut HTT mRNA levels comparing to ISIS 460209.
TABLE-US-00076 TABLE 78 Modified oligonucleotides comprising
various modifications targeting HTT SNP Wing SEQ ISIS Chemistry ID
NO Sequence (5' to 3') Modification 5' 3' NO. 460209*
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 ekk kke
10 (ekk-d9-kke) 539560
T.sub.eA.sub.kA.sub.kATTG.sup.pUCATCA.sub.kC.sub.kC.sub.e 5-propyne
in ekk kke 11 gap 539563
T.sub.eA.sub.kA.sub.kATTG.sup.xTCATCA.sub.kC.sub.kC.sub.e 2-thio in
gap ekk kke 10 539554
T.sub.eA.sub.kA.sub.kATTGU.sub.yCATCA.sub.kC.sub.kC.sub.e
.alpha.-L-LNA in gap ekk kke 11 542686
T.sub.eA.sub.kA.sub.kATTGT.sub.zCATCA.sub.kC.sub.kC.sub.e F-HNA in
gap ekk kke 10 540108
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGTCATC.sub.kA.sub.kC.sub.eC.su-
b.eA.sub.e 5-7-5 eeekk kkeee 23 (eeekk-d7-kkeee) 544840
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT.sub.kT.sub.kA.-
sub.k 3-9-6 ekk kkekkk 15 (ekk-d9-kkekkk) 550904
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.eT.sub.kT.sub.kT.-
sub.kA.sub.k 3-9-7 ekk kkekkkk 18 (ekk-d9-kkekkkk) 540082
A.sub.eT.sub.kT.sub.kG.sub.kTCATCACCAG.sub.kA.sub.e 4-9-2 ekkk ke
65 (ekkk-d9-ke) 540089
T.sub.eT.sub.kA.sub.kA.sub.kTAAATTGTCA.sub.kT.sub.e 4-9-2 ekkk ke
66 (ekkk-d9-ke) 540095
A.sub.eT.sub.kTGTCATCACC.sub.kA.sub.kG.sub.kA.sub.e 2-9-4 ek kkke
67 (ek-d9-kkke) 543528
A.sub.eT.sub.kA.sub.eA.sub.kAATGTCATCA.sub.kC.sub.eC.sub.kA.sub.e
Mismatch at ekek keke 77 position 2 counting from 5' gap 543533
T.sub.eA.sub.kA.sub.kATAGTCATCA.sub.kC.sub.kC.sub.e Mismatch at ekk
kke 78 position 3 counting from 5' gap 387916
T.sub.eC.sub.eT.sub.eC.sub.eT.sub.eATTGCACATTC.sub.eC.sub.eA.sub.eA-
.sub.eG.sub.e 5-10-5 eeeee eeeee 56 (pos control) 141923
C.sub.eC.sub.eT.sub.eT.sub.eC.sub.eCCTGAAGGTTC.sub.eC.sub.eT.sub.eC-
.sub.eC.sub.e 5-10-5 eeeee eeeee 57 (neg control) e = 2'-MOE; k =
cEt; d = 2'-deoxyribonucleoside
TABLE-US-00077 TABLE 79 Comparison of selectivity in inhibition of
HTT mRNA levels, and Tm of modified oligonucleotides with ISIS
460209 targeted tors7685686 in GM04022 cells Tm (.degree. C.) % UTC
Selectivity Wing Chemistry ISIS NO mutant wt mut wt (wt vs mut)
Modification 5' 3' 460209* 53.7 52.2 23 57 2.7 3-9-3 ekk kke
(ekk-d9-kke) 539560 54.1 50.8 13 32 2.4 5-propyne in gap ekk kke
539563 53.8 49.1 13 40 3.2 2-thio in gap ekk kke 539554 56.5 54.5
54 89 1.7 .alpha.-L-LNA in gap ekk kke 542686 56.1 50.4 26 62 2.4
F-HNA in gap ekk kke 540108 60.0 57.9 27 63 2.3 5-7-5 eeekk kkeee
(eeekk-d7-kkeee) 544840 -- -- 19 40 2.1 3-9-6 ekk kkekkk
(ekk-d9-kkekkk) 550904 -- -- 39 65 1.7 3-9-7 ekk kkekkkk (ekk-d9-
kkekkkk) 540082 -- -- 21 62 3.0 4-9-2 ekkk ke (ekkk-d9-ke) 540089
-- -- 78 86 1.1 4-9-2 ekkk ke (ekkk-d9-ke) 540095 -- -- 22 66 3.1
2-9-4 ek kkke (ek-d9-kkke) 543528 50.5 49.1 44 90 2.1 Mismatch at
ekek keke position 2 counting from 5' gap 543533 47.0 44.8 83 97
1.2 Mismatch at ekk kke position 3 counting from 5' gap 387916 --
-- 21 19 0.9 5-10-5 eeeee eeeee (pos control) 141923 -- -- 95 99
1.0 5-10-5 eeeee eeeee (neg control) e = 2'-MOE; k = cEt; d =
2'-deoxyribonucleoside
Example 54
Chimeric Oligonucleotides Comprising Modifications at the SNP Site
of HTT Gene
[0892] Additional gapmers are designed based on the gapmer selected
from studies described in Tables 73 and 74 (ISIS 540108) and is
marked with an asterisk (*). These gapmers are designed by
introducing modifications at the SNP site at position 9 of the
oligonucleotides, as counted from the 5'-terminus and are created
with a 5-7-5 motif.
[0893] The gapmers are described in Table 80. The internucleoside
linkages throughout each gapmer are phosphorothioate (P.dbd.S)
linkages. All cytosine nucleobases throughout each gapmer are
5-methyl cytosines. Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "a", "b", "e", or "k" are sugar modified nucleosides. A
subscript "a" indicates 2'-(ara)-F modified nucleoside, a subscript
"b" indicates a 5'-Me DNA modified nucleoside, a subscript "e"
indicates a 2'-O-methoxyethyl (MOE) modified nucleoside, and a
subscript "k" indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside
(e.g. cEt). .sup.xT indicates a 2-thio-thymidine nucleoside.
Underline nucleoside or the number in parentheses indicates the
position on the oligonucleotides opposite to the SNP position, as
counted from the 5'-terminus.
TABLE-US-00078 TABLE 80 Modified oligonucleotides targeting HTT SNP
Wing SEQ ISIS Gap chemistry ID NO Sequence (5' to 3') Chemistry 5'
3' NO. 540108* (9)
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGTCATC.sub.kA.sub.kC.sub.eC.sub.eA.s-
ub.e Deoxy eeekk kkeee 32 XXXX28 (9)
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTG.sup.xTCATC.sub.kA.sub.kC-
.sub.eC.sub.eA.sub.e Deoxy/2- eeekk kkeee 32 thio XXXX29 (9)
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGT.sub.aCATC.sub.kA.sub.kC-
.sub.eC.sub.eA.sub.e Deoxy/2'- eeekk kkeee 32 (ara)-F XXXX30 (9)
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGT.sub.bCATC.sub.kA.sub.kC-
.sub.eC.sub.eA.sub.e Deoxy/5'- eeekk kkeee 32 Me-DNA e = 2'-MOE, k
= cEt
Example 55
Chimeric Oligonucleotides Comprising Modifications at the Wing
Regions Targeting HTT SNP
[0894] Additional gapmers are designed based on the gapmer selected
from studies described in Tables 89 and 21 (ISIS 540107) and is
marked with an asterisk (*). These gapmers are designed by
introducing bicyclic modified nucleosides at the 3' or 5' terminus
and are tested to evaluate if the addition of bicyclic modified
nucleosides at the wing regions improves the activity and
selectivity in inhibition of mutant HTT SNP.
[0895] The gapmers comprise a 5-7-5 motif and are described in
Table 81. The internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e", or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside, and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
TABLE-US-00079 TABLE 81 Modified oligonucleotides targeting HTT SNP
wing SEQ ISIS chemistry ID NO Sequence (5' to 3') Motif 5' 3' NO.
540107*
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.kTTGTCATC.sub.kA.sub.eC.sub.eC.s-
ub.eA.sub.e 5-7-5 eeeek keeee 32 (eeeek-d7-keeee) XXXX31
A.sub.eT.sub.eA.sub.kA.sub.kA.sub.kTTGTCATC.sub.kA.sub.kC.sub.kC.su-
b.eA.sub.e 5-7-5 eekkk kkkee 32 (eekkk-d7-kkkee) XXXX32
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.kTTGTCATC.sub.eA.sub.eC.sub.eC.su-
b.eA.sub.e 5-7-5 eeeek eeeee 32 (eeeek-d7-eeeee) XXXX33
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGTCATC.sub.eA.sub.eC.sub.eC.su-
b.eA.sub.e 5-7-5 eeekk eeeee 32 (eeekk-d7-eeeee) XXXX34
A.sub.eT.sub.eA.sub.kA.sub.kA.sub.kTTGTCATC.sub.eA.sub.eC.sub.eC.su-
b.eA.sub.e 5-7-5 eekkk eeeee 32 (eekkk-d7-eeeee) XXXX35
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.kA.sub.eC.sub.eC.su-
b.eA.sub.e 5-7-5 eeeee keeee 32 (eeeee-d7-keeee) XXXX36
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.kA.sub.kC.sub.eC.su-
b.eA.sub.e 5-7-5 eeeee kkeee 32 (eeeee-d7-kkeee) XXXX37
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.kA.sub.kC.sub.kC.su-
b.eA.sub.e 5-7-5 eeeee kkkee 32 (eeeee-d7-kkkee) e = 2'-MOE; k =
cEt; d = 2'-deoxyribonucleoside
Example 56
Chimeric Oligonucleotides Comprising Wing and Central Gap
Modifications Targeting HTT SNP
[0896] Additional gapmers are designed based on the parent gapmer,
ISIS 460209, wherein the central gap region comprises nine
2'-deoxyribonucleosides and is marked with an asterisk (*) in the
table. These gapmers were designed by introducing modifications at
the wings or the central gap region and are created with a 3-9-3
motif.
[0897] The gapmers are described in Table 82. The internucleoside
linkages throughout each gapmer are phosphorothioate (P.dbd.S)
linkages. All cytosine nucleobases throughout each gapmer are
5-methyl cytosines. Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e", or "k" are sugar modified nucleosides. A subscript
"e" indicates a 2'-O-methoxyethyl (MOE) modified nucleoside, and a
subscript "k" indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside
(e.g. cEt). .sup.PT indicates a 5-propyne thymidine nucleoside.
.sup.PC indicates a 5-propyne cytosine nucleoside. Underline
nucleoside or the number in parentheses indicates the position on
the oligonucleotides opposite to the SNP position, as counted from
the 5'-terminus.
TABLE-US-00080 TABLE 82 Modified oligonucleotides targeting HTT SNP
wing SEQ ISIS chemistry ID NO Sequence (5' to 3') Modification 5'
3' NO 460209* (8)
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e Deoxy gap ekk
kke 10 (3-9-3) 552103 (8)
T.sub.eA.sub.eA.sub.eATTGTCATCA.sub.kC.sub.kC.sub.k Deoxy gap eee
kkk 10 (3-9-3) 552104 (8)
T.sub.kA.sub.kA.sub.kATTGTCATCA.sub.eC.sub.eC.sub.e Deoxy gap kkk
eee 10 (3-9-3) 552105 (8)
T.sub.eA.sub.kA.sub.kATTG.sup.PT.sup.PCATCA.sub.kC.sub.kC.sub.e
Deoxy/5- ekk kke 10 Propyne 552106 (8)
T.sub.eA.sub.kA.sub.kA.sup.PT.sup.PTG.sup.PT.sup.PCA.sup.PT.sup-
.PCA.sub.kC.sub.kC.sub.e Deoxy/5- ekk kke 10 Propyne e = 2'-MOE; k
= cEt
Example 57
Modified Oligonucleotides Comprising F-HNA Modification at the
Central Gap or Wing Region Targeting HTT SNP
[0898] A series of modified oligonucleotides were designed based on
ISIS 460209, wherein the central gap region contains nine
2'-deoxyribonucleosides. These modified oligonucleotides were
designed by incorporating one or more F-HNA(s) modification within
the central gap region or on the wing regions. The F-HNA containing
oligonucleotides were tested for their ability to selectively
inhibit mutant (mut) HTT mRNA expression levels targeting rs7685686
while leaving the expression of the wild-type (wt) intact. The
activity and selectivity of the modified oligonucleotides were
evaluated and compared to ISIS 460209.
[0899] The modified oligonucleotides and their motifs are described
in Table 83. The internucleoside linkages throughout each modified
oligonucleotide are phosphorothioate linkages (P.dbd.S).
Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicate 2'-O-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). Nucleosides
followed by a subscript "z" indicate F-HNA modified nucleosides.
.sup.mC indicates a 5-methyl cytosine nucleoside. Underlined
nucleoside indicates the position on the oligonucleotides opposite
to the SNP position, which is position 8 as counted from the
5'-terminus.
[0900] The gap-interrupted antisense oligonucleotides were tested
in vitro. Heterozygous fibroblast GM04022 cell line was used.
Cultured GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 84.
[0901] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0902] The parent gapmer, 460209 is marked with an asterisk (*) in
the table and was included in the study as a benchmark
oligonucleotide against which the activity and selectivity of
antisense oligonucleotides targeting nucleotides overlapping the
SNP position could be compared.
[0903] As illustrated in Table 84, oligonucleotides comprising
F-HNA modification(s) showed improvement in selectivity while
maintaining activity as compared to the parent gapmer, ISIS
460209.
TABLE-US-00081 TABLE 83 Gap-interrupted antisense oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') Motif chemistry 5' 3' NO. 460209* T.sub.eA.sub.kA.sup.kATTGT
3-9-3 Full deoxy ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 566266
T.sub.eA.sub.kA.sub.kA.sub.zTTGT 3-9-3 or Deoxy/F- ekk or kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 4-8-3 HNA ekkz
566267 T.sub.eA.sub.kA.sub.kAT.sub.zTGT 3-9-3 or Deoxy/F- ekk or
kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 5-7-3 HNA
ekkdz 566268 T.sub.eA.sub.kA.sub.kATT.sub.zGT 3-9-3 or Deoxy/F- ekk
or kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 6-6-3
HNA ekkddz 566269 T.sub.eA.sub.kA.sub.kATTG.sub.zT 3-9-3 or
Deoxy/F- ekk or kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 7-5-3 HNA ekkdddz
567369 T.sub.eA.sub.kA.sub.kA.sub.zT.sub.zTGT 3-9-3 or Deoxy/F- ekk
or kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 5-7-3
HNA ekkzz e = 2'-MOE, k = cEt, d = 2'-.beta.-deoxyribonucleoside, z
= F-HNA
TABLE-US-00082 TABLE 84 Comparison of inhibition of HTT mRNA levels
and selectivity of gap-interrupted antisense oligonucleotides with
ISIS 460209 targeting HTT SNP IC.sub.50 (.mu.M) Selectivity Gap
Wing Chemistry ISIS NO Mut Wt (wt vs mut) Motif chemistry 5' 3'
460209* 0.28 3.1 11 3-9-3 Full deoxy ekk kke 566266 0.20 >10
>50 3-9-3 or Deoxy/F- ekk or ekkz kke 4-8-3 HNA 566267 0.90
>9.9 >11 3-9-3 or Deoxy/F- ekk or ekkdz kke 5-7-3 HNA 566268
1.0 >10 >10 3-9-3 or Deoxy/F- ekk or ekkddz kke 6-6-3 HNA
566269 1.7 >10.2 >6 3-9-3 or Deoxy/F- ekk or kke 7-5-3 HNA
ekkdddz 567369 0.82 >9.8 >12 3-9-3 or Deoxy/F- ekk or ekkzz
kke 5-7-3 HNA e = 2'-MOE, k = cEt, d =
2'-.beta.-deoxyribonucleoside, z = F-HNA
Example 58
Modified Oligonucleotides Comprising cEt Modification(s) at the
Central Gap Region Targeting HTT SNP
[0904] A series of modified oligonucleotides were designed in the
same manner as described in Example 57.
[0905] These modified oligonucleotides were designed by replacing
F-HNA(s) with cEt modification(s) in the central gap region while
maintaining the wing configuration. The modified oligonucleotides
were tested for their ability to selectively inhibit mutant (mut)
HTT mRNA expression levels targeting rs7685686 while leaving the
expression of the wild-type (wt) intact. The activity and
selectivity of the modified oligonucleotides were evaluated and
compared to ISIS 460209.
[0906] The modified oligonucleotides and their motifs are described
in Table 85. The internucleoside linkages throughout each modified
oligonucleotide are phosphorothioate linkages (P.dbd.S).
Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicate 2'-.beta.-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 as counted from the 5'-terminus.
[0907] The gap-interrupted antisense oligonucleotides were tested
in vitro. Heterozygous fibroblast GM04022 cell line was used.
Cultured GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented below.
[0908] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0909] As illustrated in Table 86, some of the newly designed
antisense oligonucleotides (ISIS 575006, 575007, and 575008) showed
improvement in potency and/or selectivity in inhibiting mut HTT
mRNA levels comparing to ISIS 460209.
TABLE-US-00083 TABLE 85 Gap-interrupted antisense oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') Motif chemistry 5' 3' NO. 460209* T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full deoxy ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 575006
T.sub.eA.sub.kA.sub.kA.sub.kTTGT 4-8-3 Full deoxy ekkk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 575007
T.sub.eA.sub.kA.sub.kAT.sub.kTGT 3-9-3 or Full deoxy or ekk or kke
10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 5-7-3
Deoxy/cEt ekkdk 575133 T.sub.eA.sub.kA.sub.kATT.sub.kGT 3-9-3 or
Full deoxy or ekk or kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 6-6-3 Deoxy/cEt
ekkddk 575134 T.sub.eA.sub.kA.sub.kATTG.sub.kT 3-9-3 or Full deoxy
or ekk or kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e
7-5-3 Deoxy/cEt ekkdddk 575008
T.sub.eA.sub.kA.sub.kA.sub.kT.sub.kTGT 5-7-3 Deoxy ekkkk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e e = 2'-MOE, k =
cEt, d = 2'-.beta.-deoxyribonucleoside
TABLE-US-00084 TABLE 86 Comparison of inhibition of HTT mRNA levels
and selectivity of gap-interrupted antisense oligonucleotides with
ISIS 460209 targeting HTT SNP IC.sub.50 (.mu.M) Selectivity Gap
Wing Chemistry ISIS NO Mut Wt (wt vs mut) Motif chemistry 5' 3'
460209* 0.28 3.1 11 3-9-3 Full deoxy ekk kke 575006 0.27 3.8 14
4-8-3 Full deoxy ekkk kke 575007 0.67 >10.1 >15 3-9-3 or Full
deoxy or ekk or kke 5-7-3 Deoxy/cEt ekkdk 575133 3.0 >9 >3
3-9-3 or Full deoxy or ekk or kke 6-6-3 Deoxy/cEt ekkddk 575134 2.6
>10.4 >4 3-9-3 or Full deoxy or ekk or kke 7-5-3 Deoxy/cEt
ekkdddk 575008 0.18 >9.9 >55 5-7-3 Full deoxy ekkkk kke e =
2'-MOE, k = cEt, d = 2'-.beta.-deoxyribonucleoside
Example 59
Modified Oligonucleotides Comprising F-HNA Modification at the
3'-End of Central Gap Region Targeting HTT SNP
[0910] A series of modified oligonucleotides were designed based on
ISIS 460209, wherein the central gap region contains nine
2'-deoxyribonucleosides. These modified oligonucleotides were
designed by incorporating one F-HNA modification at the 3'-end of
the central gap region. The F-HNA containing oligonucleotides were
tested for their ability to selectively inhibit mutant (mut) HTT
mRNA expression levels targeting HTT SNP while leaving the
expression of the wild-type (wt) intact. The activity and
selectivity of the modified oligonucleotides were evaluated and
compared to ISIS 460209.
[0911] The modified oligonucleotides and their motifs are described
in Table 87. The internucleoside linkages throughout each modified
oligonucleotide are phosphorothioate linkages (P.dbd.S).
Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicate 2'-.beta.-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). Nucleosides
followed by a subscript "z" indicate F-HNA modified nucleosides.
.sup.mC indicates a 5-methyl cytosine nucleoside. Underlined
nucleoside indicates the position on the oligonucleotides opposite
to the SNP position, which is position 8 as counted from the
5'-terminus.
[0912] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 88.
[0913] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0914] As illustrated in Table 88, a couple of the newly designed
antisense oligonucleotides (ISIS 575833 and 575834) showed
improvement in selectivity while maintaining potency as compared to
ISIS 460209. ISIS 575836 showed an increase in potency without
improvement in selectivity while ISIS 575835 showed comparable
selectivity without improvement in potency.
TABLE-US-00085 TABLE 87 Modified oligonucleotides targeting HTT SNP
Gap Wing SEQ ISIS Sequence chem- chemistry ID NO. (5' to 3') Motif
istry 5' 3' NO. 460209* T.sub.eA.sub.kA.sub.kATTGT 3-9-3 Full ekk
kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy
575833 T.sub.eA.sub.kA.sub.kATTGT 3-9-3 Deoxy/ ekk kke or 10
.sup.mC.sub.zAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e or F-HNA
zdddkke 3-5-7 575834 T.sub.eA.sub.kA.sub.kATTGT 3-9-3 Deoxy/ ekk
kke or 10 .sup.mCA.sub.zT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e
or F-HNA zddkke 3-6-6 575835 T.sub.eA.sub.kA.sub.kATTGT 3-9-3
Deoxy/ ekk kke or 10
.sup.mCAT.sub.z.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e or F-HNA
zdkke 3-7-5 575836 T.sub.eA.sub.kA.sub.kATTGT 3-9-3 Deoxy/ ekk kke
or 10 .sup.mCAT.sup.mC.sub.zA.sub.k.sup.mC.sub.k.sup.mC.sub.e or
F-HNA zkke 3-8-4 e = 2'-MOE, k = cEt, d =
2'-.beta.-deoxyribonucleoside, z = F-HNA
TABLE-US-00086 TABLE 88 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeting HTT SNP IC.sub.50 (.mu.M) Selectivity Wing Chemistry ISIS
NO Mut Wt (wt vs mut) Motif Gap chemistry 5' 3' 460209* 0.28 3.1 11
3-9-3 Full deoxy ekk kke 575833 0.22 4.2 19 3-9-3 or Deoxy/F-HNA
ekk kke or 3-5-7 zdddkke 575834 0.30 6.3 21 3-9-3 or Deoxy/F-HNA
ekk kke or 3-6-6 zddkke 575835 0.89 9.8 11 3-9-3 or Deoxy/F-HNA ekk
kke or 3-7-5 zdkke 575836 0.09 0.4 4.6 3-9-3 or Deoxy/F-HNA ekk kke
or zkke 3-8-4 e = 2'-MOE, k = cEt, d =
2'-.beta.-deoxyribonucleoside, z = F-HNA
Example 60
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0915] Additional chimeric antisense oligonucleotides were designed
based on ISIS 460209 and ISIS 540094 wherein the central gap region
contains nine 2'-deoxynucleosides. These gapmers were designed with
the central gap region shortened by introducing cEt modifications
to the wing regions, or interrupted by introducing cEt
modifications at the 3'-end of the central gap region. The modified
oligonucleotides were tested for their ability to selectively
inhibit mutant (mut) HTT mRNA expression levels targeting HTT SNP
while leaving the expression of the wild-type (wt) intact. The
activity and selectivity of the modified oligonucleotides were
evaluated and compared to ISIS 460209 and 540094.
[0916] The gapmers and their motifs are described in Table 89. The
internucleoside linkages throughout each modified oligonucleotide
are phosphorothioate linkages (P.dbd.S). Nucleosides without a
subscript are (3-D-2'-deoxyribonucleosides. Nucleosides followed by
a subscript "e" indicate 2'-O-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 4 or 8 as counted from the 5'-terminus.
[0917] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 90.
[0918] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0919] As illustrated in Table 90, the newly designed antisense
oligonucleotides (ISIS 575003) showed improvement in selectivity
while maintaining potency as compared to ISIS 460209.
TABLE-US-00087 TABLE 89 Short-gap antisense oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') Motif chemistry 5' 3' NO. 460209* T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy 540094*
T.sub.eT.sub.kGT.sup.mCAT.sup.mCA 2-9-4 Full ek kkke 67
.sup.mC.sup.mCA.sub.kG.sub.kA.sub.kA.sub.e deoxy 575003
T.sub.eT.sub.kGT.sup.mCAT.sup.mCA 2-8-5 Full ek kkkke 67
.sup.mC.sup.mC.sub.kA.sub.kG.sub.kA.sub.kA.sub.e deoxy 575004
T.sub.eT.sub.kGT.sup.mCAT.sup.mCA 2-9-4 Full ek kkke 67
.sup.mC.sub.k.sup.mCA.sub.kG.sub.kA.sub.kA.sub.e or deoxy or 2-7-6
or kdkkke Deoxy/cEt 575005 T.sub.eT.sub.kGT.sup.mCAT.sup.mCA 2-7-6
Full ek kkkkke 67
.sup.mC.sub.k.sup.mC.sub.kA.sub.kG.sub.kA.sub.kA.sub.e deoxy e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00088 TABLE 90 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeting HTT SNP IC.sub.50 (.mu.M) Selectivity Wing Chemistry ISIS
NO Mut Wt (wt vs mut) Motif Gap chemistry 5' 3' 460209* 0.34 3.3
9.7 3-9-3 Full deoxy ekk kke 540094* 0.17 2.4 14 2-9-4 Full deoxy
ek kkke 575003 0.40 10 25 2-8-5 Full deoxy ek kkkke 575004 1.2
>9.6 >8 2-9-4 or Full deoxy or ek kkke or 2-7-6 Deoxy/cEt
kdkkke 575005 >10 >100 >10 2-7-6 Full deoxy ek kkkkke e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
Example 61
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0920] Additional chimeric antisense oligonucleotides were designed
based on 15-mer, ISIS 460209 and 17-mer, ISIS 476333 wherein the
central gap region contains nine 2'-deoxynucleosides. These gapmers
were designed with the central gap region shortened at the 5'-end
of the central gap region. The gapmers were tested for their
ability to selectively inhibit mutant (mut) HTT mRNA expression
levels targeting HTT SNP while leaving the expression of the
wild-type (wt) intact. The activity and selectivity of the gapmers
were evaluated and compared to ISIS 460209 and ISIS 476333.
[0921] The gapmers and their motifs are described in Table 91. The
internucleoside linkages throughout each modified oligonucleotide
are phosphorothioate linkages (P.dbd.S). Nucleosides without a
subscript are (3-D-2'-deoxyribonucleosides. Nucleosides followed by
a subscript "e" indicate 2'-O-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 or 9 as counted from the 5'-terminus.
[0922] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 92.
[0923] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0924] As illustrated in Table 92, a couple of the newly designed
antisense oligonucleotides (ISIS 571036 and 571037) showed
improvement in potency and selectivity in inhibiting mut HTT mRNA
levels as compared to ISIS 460209 and 476333.
TABLE-US-00089 TABLE 91 Short-gap antisense oligonucleotides
targeting HTT SNP Gap Wing SEQ ISIS Sequence chem- chemistry ID NO.
(5' to 3') Motif istry 5' 3' NO. 460209* T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy 476333*
A.sub.eT.sub.kA.sub.eA.sub.kATTGT 4-9-4 Full ekek keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e deoxy
571036 A.sub.eT.sub.kA.sub.eA.sub.kA.sub.eT.sub.kTGT 6-7-4 Full
ekekek keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e deoxy
571037 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.kT.sub.kTGT 6-7-4 Full
eeeekk keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e deoxy
571038 A.sub.eT.sub.kA.sub.eA.sub.kA.sub.eT.sub.eTGT 6-7-4 Full
ekekee keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e deoxy e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00090 TABLE 92 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeting HTT SNP Selectivity Wing IC.sub.50 (.mu.M) (wt vs Gap
Chemistry ISIS NO Mut Wt mut) Motif chemistry 5' 3' 460209* 0.34
3.3 9.7 3-9-3 Full deoxy ekk kke 476333* 0.32 1.5 4.7 4-9-4 Full
deoxy ekek keke 571036 0.17 >10.0 >59 6-7-4 Full deoxy ekekek
keke 571037 0.11 >9.9 >90 6-7-4 Full deoxy eeeekk keke 571038
1.5 >10.5 >7 6-7-4 Full deoxy ekekee keke e = 2'-MOE, k =
cEt, d = 2'-deoxyribonucleoside
Example 62
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0925] Additional chimeric antisense oligonucleotides were designed
based on 15-mer, ISIS 460209 wherein the central gap region
contains nine 2'-deoxynucleosides. These gapmers were designed by
having the central gap region shortened to seven
2'-deoxynucleosides. The gapmers were tested for their ability to
selectively inhibit mutant (mut) HTT mRNA expression levels
targeting HTT SNP while leaving the expression of the wild-type
(wt) intact. The activity and selectivity of the gapmers were
evaluated and compared to ISIS 460209.
[0926] The gapmers and their motifs are described in Table 93. The
internucleoside linkages throughout each modified oligonucleotide
are phosphorothioate linkages (P.dbd.S). Nucleosides without a
subscript are 13-D-2'-deoxyribonucleosides. Nucleosides followed by
a subscript "e" indicate 2'-O-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 or 9 as counted from the 5'-terminus.
[0927] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 94.
[0928] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0929] As illustrated in Table 94, each of the newly designed
antisense oligonucleotides (ISIS 540108 and 571069) showed
improvement in potency and/or selectivity in inhibiting mut HTT
mRNA levels as compared to ISIS 460209.
TABLE-US-00091 TABLE 93 Short-gap antisense oligonucleotides
targeting HTT SNP Gap Wing SEQ ISIS Sequence Mo- chem- chemistry ID
NO. (5' to 3') tif istry 5' 3' NO. 460209
T.sub.eA.sub.kA.sub.kATTGT 3-9- Full ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 3 deoxy 540108
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGT 5-7- Full eeekk kkeee 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.e.sup.mC.sub.eA.sub.e 5
deoxy 571069 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.kT.sub.kTGT 6-7-
Full eeeekk kkee 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.eA.sub.e 4 deoxy
571173 A.sub.eT.sub.eA.sub.kA.sub.kATTGT 4-7- Full eekk kkeeee 32
.sup.mCAT.sub.k.sup.mC.sub.kA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
6 deoxy 572773 T.sub.eA.sub.eA.sub.kA.sub.kTTGT 4-7- Full eekk kkee
10 .sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.e.sup.mC.sub.e 4 deoxy
e = 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00092 TABLE 94 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeting HTT SNP Selectivity ISIS IC.sub.50 (.mu.M) (wt vs Gap
Wing Chemistry NO Mut Wt mut) Motif chemistry 5' 3' 460209 0.34 3.3
9.7 3-9-3 Full deoxy ekk kke 540108 0.20 >10 >50 5-7-5 Full
deoxy eeekk kkeee 571069 0.29 >9.9 >34 6-7-4 Full deoxy
eeeekk kkee 571173 1.0 >10 >10 4-7-6 Full deoxy eekk kkeeee
572773 0.71 >7.8 11 4-7-4 Full deoxy eekk kkee e = 2'-MOE, k =
cEt, d = 2'-deoxyribonucleoside
Example 63
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0930] Additional chimeric antisense oligonucleotides were designed
based on 15-mer, ISIS 460209 and 17-mer, ISIS 540108 wherein the
central gap region contains nine and seven 2'-deoxynucleosides,
respectively. These gapmers were designed by introducing one or
more cEt modification(s) at the 5'-end of the central gap region.
The gapmers were tested for their ability to selectively inhibit
mutant (mut) HTT mRNA expression levels targeting HTT SNP while
leaving the expression of the wild-type (wt) intact. The activity
and selectivity of the gapmers were evaluated and compared to ISIS
460209 and ISIS 540108.
[0931] The gapmers and their motifs are described in Table 95. The
internucleoside linkages throughout each modified oligonucleotide
are phosphorothioate linkages (P.dbd.S). Nucleosides without a
subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" indicate 2'-O-methoxyethyl (MOE)
modified nucleosides. Nucleosides followed by a subscript "k"
indicate 6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). .sup.mC
indicates a 5-methyl cytosine nucleoside. Underlined nucleoside
indicates the position on the oligonucleotides opposite to the SNP
position, which is position 8 or 9 as counted from the
5'-terminus.
[0932] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 96.
[0933] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0934] As illustrated in Table 96, most of the newly designed
oligonucleotides showed improvement in selectivity while
maintaining potency as compared to 460209.
TABLE-US-00093 TABLE 95 Short-gap antisense oligonucleotides
targeting HTT SNP Gap Wing SEQ ISIS Sequence chem- chemistry ID NO.
(5' to 3') Motif istry 5' 3' NO. 460209 T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy 540108
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGT 5-7-5 Full eeekk kkeee 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 556872 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.kTTGT 5-7-5 Full
eeeek eeeee 32
.sup.mCAT.sup.mC.sub.eA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 556873 A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGT 5-7-5 Full
eeekk eeeee 32
.sup.mCAT.sup.mC.sub.eA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 556874 A.sub.eT.sub.eA.sub.kA.sub.kA.sub.kTTGT 5-7-5 Full
eekkk eeeee 32
.sup.mCAT.sup.mC.sub.eA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 568877 A.sub.eT.sub.kA.sub.kA.sub.kA.sub.kTTGT 5-7-5 Full
ekkkk eeeee 32
.sup.mCAT.sup.mC.sub.eA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 568878 A.sub.kT.sub.kA.sub.kA.sub.kA.sub.kTTGT 5-7-5 Full
kkkkk eeeee 32
.sup.mCAT.sup.mC.sub.eA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy e = 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00094 TABLE 96 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeting HTT SNP Wing IC.sub.50 (.mu.M) Selectivity Gap Chemistry
ISIS NO Mut Wt (wt vs mut) Motif chemistry 5' 3' 460209 0.45 2.3
5.1 3-9-3 Full deoxy ekk kke 540108 0.25 9.5 38 5-7-5 Full deoxy
eeekk kkeee 556872 1.0 9.9 9.9 5-7-5 Full deoxy eeeek eeeee 556873
0.67 3.4 5.1 5-7-5 Full deoxy eeekk eeeee 556874 0.38 1.9 5.0 5-7-5
Full deoxy eekkk eeeee 568877 0.44 6.2 14 5-7-5 Full deoxy ekkkk
eeeee 568878 0.41 8.6 21 5-7-5 Full deoxy kkkkk eeeee e = 2'-MOE, k
= cEt, d = 2'-deoxyribonucleoside
Example 64
Short-Gap Chimeric Oligonucleotides Targeting Huntingtin (HTT)
Single Nucleotide Polymorphism (SNP)
[0935] Additional chimeric antisense oligonucleotides were designed
based on 15-mer, ISIS 460209 and 17-mer, ISIS 540108 wherein the
central gap region contains nine and seven 2'-deoxynucleosides,
respectively. These gapmers were designed by introducing one or
more cEt modification(s) at the 3'-end of the central gap region.
The gapmers were tested for their ability to selectively inhibit
mutant (mut) HTT mRNA expression levels targeting HTT SNP while
leaving the expression of the wild-type (wt) intact. The activity
and selectivity of the gapmers were evaluated and compared to ISIS
460209 and ISIS 540108.
[0936] The gapmers and their motifs are described in Table 97. The
internucleoside linkages throughout each modified oligonucleotide
are phosphorothioate linkages (P.dbd.S). Nucleosides without a
subscript are (3-D-2'-deoxyribonucleosides. Nucleosides followed by
a subscript "e" indicate 2'-O-methoxyethyl (MOE) modified
nucleosides. Nucleosides followed by a subscript "k" indicate
6'-(S)--CH.sub.3 bicyclic nucleosides (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 or 9 as counted from the 5'-terminus.
[0937] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.12, 0.37, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and mRNA levels were measured by quantitative real-time
PCR using ABI assay C.sub.--2229297.sub.--10 which measures at
dbSNP rs362303. The HTT mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN and the results are
presented in Table 98.
[0938] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0939] As illustrated in Table 98, each of the newly designed
oligonucleotides showed improvement in selective inhibition of
mutant HTT mRNA levels compared to ISIS 460209. Comparable potency
was observed for ISIS 568879 and 568880 while a slight loss in
potency was observed for ISIS 556875, 556876 and 556877.
TABLE-US-00095 TABLE 97 Short-gap antisense oligonucleotides
targeting HTT SNP Gap Wing SEQ ISIS Sequence chem- chemistry ID NO.
(5' to 3') Motif istry 5' 3' NO. 460209 T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy 540108
A.sub.eT.sub.eA.sub.eA.sub.kA.sub.kTTGT 5-7-5 Full eeekk kkeee 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 556875 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGT 5-7-5 Full
eeeee keeee 32
.sup.mCAT.sup.mC.sub.kA.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 556876 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGT 5-7-5 Full
eeeee kkeee 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.e.sup.mC.sub.eA.sub.e
deoxy 556877 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGT 5-7-5 Full
eeeee kkkee 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.k.sup.mC.sub.eA.sub.e
deoxy 568879 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGT 5-7-5 Full
eeeee kkkke 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.k.sup.mC.sub.kA.sub.e
deoxy 568880 A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGT 5-7-5 Full
eeeee kkkkk 32
.sup.mCAT.sup.mC.sub.kA.sub.k.sup.mC.sub.k.sup.mC.sub.kA.sub.k
deoxy e = 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00096 TABLE 98 Comparison of inhibition of HTT mRNA levels
and selectivity of modified oligonucleotides with ISIS 460209
targeting HTT SNP Selectivity Wing IC.sub.50 (.mu.M) (wt vs Gap
Chemistry ISIS NO Mut Wt mut) Motif chemistry 5' 3' 460209 0.45 2.3
5.1 3-9-3 Full deoxy ekk kke 540108 0.25 9.5 38 5-7-5 Full deoxy
eeekk kkeee 556875 1.9 >9.5 >5 5-7-5 Full deoxy eeeee keeee
556876 0.99 >9.9 >10 5-7-5 Full deoxy eeeee kkeee 556877 1.0
>10 >10 5-7-5 Full deoxy eeeee kkkee 568879 0.44 >10.1
>23 5-7-5 Full deoxy eeeee kkkke 568880 0.59 >10 >17 5-7-5
Full deoxy eeeee kkkkk e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
Example 65
Modified Oligonucleotides Targeting Huntingtin (HTT) Single
Nucleotide Polymorphism (SNP)
[0940] A series of modified oligonucleotides were designed based on
the parent gapmer, ISIS 460209 wherein the central gap region
contains nine 2'-deoxyribonucleosides. These modified
oligonucleotides were designed by introducing various chemical
modifications in the central gap region and were tested for their
ability to selectively inhibit mutant (mut) HTT mRNA expression
levels targeting SNP while leaving the expression of the wild-type
(wt) intact. The activity and selectivity of the modified
oligonucleotides were evaluated and compared to the parent gapmer,
ISIS 460209.
[0941] The modified oligonucleotides were created with a 3-9-3
motif and are described in Table 99. The internucleoside linkages
throughout each gapmer are phosphorothioate (P.dbd.S) linkages,
except for the internucleoside linkage having a subscript "p" which
indicates a methyl phosphonate internucleoside linkage
(--O--P(CH.sub.3)(.dbd.O)--O--). Nucleosides without a subscript
are .beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. .sup.xT indicates a
2-thio-thymidine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 as counted from the 5'-terminus.
[0942] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used (from Coriell
Institute). Cultured GM04022 cells at a density of 25,000 cells per
well were transfected using electroporation with 0.12, 0.37, 1.1,
3.3 and 10 .mu.M concentrations of modified oligonucleotides. After
a treatment period of approximately 24 hours, cells were washed
with DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN and the results are presented in
Table 100.
[0943] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0944] As illustrated in Table 100, improvement in selectivity with
a slight decrease in potency was observed for the newly designed
oligonucleotides as compared to ISIS 460209.
TABLE-US-00097 TABLE 99 Short-gap antisense oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') chemistry 5' 3' NO. 460209 T.sub.eA.sub.kA.sub.kATTGT Full
deoxy ekk kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e
556845 T.sub.eA.sub.kA.sub.kA.sup.xTTGT Deoxy/2-Thio ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 556847
T.sub.eA.sub.kA.sub.kA.sup.xT.sup.xTGT Deoxy/2-Thio ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 558257
T.sub.eA.sub.kA.sub.kATT.sub.pGT Deoxy/Methyl ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC Phosphonate 571125
T.sub.eA.sub.kA.sub.kA.sup.xTT.sub.pGT Deoxy/2-Thio/ ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e Methyl
Phosphonate e = 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00098 TABLE 100 Comparison of inhibition of HTT mRNA
levels and selectivity of modified oligonucleotides with ISIS
460209 targeting HTT SNP Wing IC.sub.50 (.mu.M) Selectivity
Chemistry ISIS NO Mut Wt (wt vs mut) Gap chemistry 5' 3' 460209
0.56 3.8 6.8 Full deoxy ekk kke 556845 0.98 >9.8 >10
Deoxy/2-Thio ekk kke 556847 1.3 >10.4 >8 Deoxy/2-Thio ekk kke
558257 1.7 >10.2 >6 Deoxy/Methyl ekk kke Phosphonate 571125
1.8 >10.8 >6 Deoxy/2- ekk kke Thio/Methyl Phosphonate e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
Example 66
Modified Oligonucleotides Comprising Chemical Modifications in the
Central Gap Region Targeting Huntingtin (HTT) Single Nucleotide
Polymorphism (SNP)
[0945] Additional chimeric antisense oligonucleotides were designed
in the same manner as the antisense oligonucleotides described in
Example 65. These gapmers were designed by introducing various
modifications in the central gap region and were tested for their
ability to selectively inhibit mutant (mut) HTT mRNA expression
levels targeting SNP while leaving the expression of the wild-type
(wt) intact. The activity and selectivity of the modified
oligonucleotides were evaluated and compared to the parent gapmer,
ISIS 460209.
[0946] The modified oligonucleotides and their motifs are described
in Table 101. The internucleoside linkages throughout each gapmer
are phosphorothioate (P.dbd.S) linkages, except for the
internucleoside linkage having a subscript "p" which indicates a
methyl phosphonate internucleoside linkage
(--O--P(CH.sub.3)(.dbd.O)--O--). Nucleosides without a subscript
are .beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. .sup.xT indicates a
2-thio-thymidine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 as counted from the 5'-terminus.
[0947] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used (from Coriell
Institute). Cultured GM04022 cells at a density of 25,000 cells per
well were transfected using electroporation with 0.12, 0.37, 1.1,
3.3 and 10 .mu.M concentrations of modified oligonucleotides. After
a treatment period of approximately 24 hours, cells were washed
with DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN and the results are presented in
Table 102.
[0948] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0949] As illustrated in Table 102, some of the newly designed
oligonucleotides showed improvement in selectivity while
maintaining potency as compared to 460209.
TABLE-US-00099 TABLE 101 Short-gap antisense oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') Motif chemistry 5' 3' NO. 460209 T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full deoxy ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 551429
T.sub.eA.sub.eA.sub.eA.sub.kT.sub.kTGT 5-7-3 Full deoxy eeekk kke
10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 571122
T.sub.eA.sub.eA.sub.eA.sub.k.sup.xTTGT 4-8-3 Deoxy/2-Thio eeek kke
10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 571123
T.sub.eA.sub.eA.sub.eA.sub.kT.sub.kT.sub.pGT 5-7-3 Deoxy/Methyl
eeekk kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e
Phosphonate 571124 T.sub.eA.sub.eA.sub.eA.sub.k.sup.xTT.sub.pGT
4-8-3 Deoxy/2- eeek kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e Thio/Methyl
Phosphonate 579854 T.sub.eA.sub.eA.sub.eA.sub.kTT.sub.pGT 4-8-3
Deoxy/Methyl eeek kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e Phosphonate
566282
T.sub.eA.sub.kA.sub.kA.sub.dxT.sub.dxT.sub.dG.sub.dT.sub.d.sup.mC.s-
ub.d 3-9-3 Deoxy/Methyl ekk kke 10
A.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
Phosphonate e = 2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00100 TABLE 102 Comparison of inhibition of HTT mRNA
levels and selectivity of modified oligonucleotides with ISIS
460209 targeting HTT SNP Selectivity Wing ISIS IC.sub.50 (.mu.M)
(wt vs Chemistry NO Mut Wt mut) Motif Gap chemistry 5' 3' 460209
0.56 3.8 6.8 3-9-3 Full deoxy ekk kke 551429 0.50 >10 >20
5-7-3 Full deoxy eeekk kke 571122 1.8 >10.8 >6 4-8-3
Deoxy/2-Thio eeek kke 571123 0.96 >9.6 >10 5-7-3 Deoxy/Methyl
eeekk kke Phosphonate 571124 2.3 >9.2 >4 4-8-3 Deoxy/2- eeek
kke Thio/Methyl Phosphonate 579854 0.63 >10.1 >16 4-8-3
Deoxy/Methyl eeek kke Phosphonate 566282 0.51 6.3 12.4 3-9-3
Deoxy/Methyl ekk kke Phosphonate e = 2'-MOE, k = cEt
Example 67
Modified Oligonucleotides Comprising Chemical Modifications in the
Central Gap Region Targeting Huntingtin (HTT) Single Nucleotide
Polymorphism (SNP)
[0950] Additional chimeric antisense oligonucleotides were designed
in the same manner as the antisense oligonucleotides described in
Example 65. These gapmers were designed by introducing various
modifications in the central gap region and were tested for their
ability to selectively inhibit mutant (mut) HTT mRNA expression
levels targeting SNP while leaving the expression of the wild-type
(wt) intact. The activity and selectivity of the modified
oligonucleotides were evaluated and compared to the parent gapmer,
ISIS 460209.
[0951] The modified oligonucleotides and their motifs are described
in Table 103. The internucleoside linkages throughout each gapmer
are phosphorothioate (P.dbd.S) linkages, except for the
internucleoside linkage having a subscript "p" which indicates a
methyl phosphonate internucleoside linkage
(--O--P(CH.sub.3)(.dbd.O)--O--). Nucleosides without a subscript
are .beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. .sup.xT indicates a
2-thio-thymidine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 or 9 as counted from the 5'-terminus.
[0952] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used (from Coriell
Institute). Cultured GM04022 cells at a density of 25,000 cells per
well were transfected using electroporation with 0.12, 0.37, 1.1,
3.3 and 10 .mu.M concentrations of modified oligonucleotides. After
a treatment period of approximately 24 hours, cells were washed
with DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN and the results are presented in
Table 104.
[0953] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0954] As illustrated in Table 104, all but one of the newly
designed oligonucleotides showed improvement in selectivity while
maintaining potency as compared to ISIS 460209.
TABLE-US-00101 TABLE 103 Short-gap antisense oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') Motif chemistry 5' 3' NO. 460209 T.sub.eA.sub.kA.sub.kATTGT
3-9-3 Full ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy 476333
A.sub.eT.sub.kA.sub.eA.sub.kATTGT 4-9-4 Full ekek keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e deoxy
571039 A.sub.eT.sub.kA.sub.eA.sub.kA.sup.xTTGT 4-9-4 Deoxy/ ekek
keke 32 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e
2-Thio 571171 A.sub.eT.sub.kA.sub.eA.sub.kATT.sub.pGT 4-9-4 Deoxy/
ekek keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e Methyl
Phospho- nate 571041 A.sub.eT.sub.kA.sub.eA.sub.kA.sup.xTT.sub.pGT
4-9-4 Deoxy/2- ekek keke 32
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.e.sup.mC.sub.kA.sub.e Thio/
Methyl Phospho- nate e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
TABLE-US-00102 TABLE 104 Comparison of inhibition of HTT mRNA
levels and selectivity of modified oligonucleotides with ISIS
460209 targeting HTT SNP ISIS IC.sub.50 (.mu.M) Selectivity Gap
Wing Chemistry NO Mut Wt (wt vs mut) chemistry 5' 3' 460209 0.56
3.8 6.8 Full deoxy ekk kke 476333 0.56 3.4 6.1 Full deoxy ekek keke
571039 0.34 >9.9 >29 Deoxy/2-Thio ekek keke 571171 0.54
>10.3 >19 Deoxy/Methyl ekek keke Phosphonate 571041 0.75
>9.8 >13 Deoxy/2- ekek keke Thio/Methyl Phosphonate e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
Example 68
Selectivity in Inhibition of HTT mRNA Levels Targeting SNP by
Gap-Interrupted Modified Oligonucleotides
[0955] Additional modified oligonucleotides were designed based on
the parent gapmer, ISIS 460209 wherein the central gap region
contains nine 2'-deoxyribonucleosides. These modified
oligonucleotides were designed by introducing one or more modified
nucleobase(s) in the central gap region and were tested for their
ability to selectively inhibit mutant (mut) HTT mRNA expression
levels targeting SNP while leaving the expression of the wild-type
(wt) intact. The activity and selectivity of the modified
oligonucleotides were evaluated and compared to ISIS 460209.
[0956] The modified oligonucleotides were created with a 3-9-3
motif and are described in Table 105. The internucleoside linkages
throughout each gapmer are phosphorothioate (P.dbd.S) linkages.
Nucleosides without a subscript are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt). .sup.mC indicates
a 5-methyl cytosine nucleoside. .sup.xT indicates a
2-thio-thymidine nucleoside. Underlined nucleoside indicates the
position on the oligonucleotides opposite to the SNP position,
which is position 8 as counted from the 5'-terminus.
[0957] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used (from Coriell
Institute). Cultured GM04022 cells at a density of 25,000 cells per
well were transfected using electroporation with 0.12, 0.37, 1.1,
3.3 and 10 .mu.M concentrations of modified oligonucleotides. After
a treatment period of approximately 24 hours, cells were washed
with DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN.
[0958] The IC.sub.50 and selectivity were calculated using methods
previously described in Example 41. The IC.sub.50 at which each
oligonucleotide inhibits the mutant HTT mRNA expression is denoted
as `mut IC.sub.50`. The IC.sub.50 at which each oligonucleotide
inhibits the wild-type HTT mRNA expression is denoted as `wt
IC.sub.50`. Selectivity was calculated by dividing the IC.sub.50
for inhibition of the wild-type HTT versus the IC.sub.50 for
inhibiting expression of the mutant HTT mRNA.
[0959] As illustrated in Table 106, ISIS 556845 showed improvement
in selectivity and potency as compared to ISIS 460209. ISIS 556847
showed improvement in selectivity with comparable potency while
ISIS 556846 showed improvement in potency with comparable
selectivity.
TABLE-US-00103 TABLE 105 Gap-interrupted modified oligonucleotides
targeting HTT SNP Wing SEQ ISIS Sequence Gap chemistry ID NO. (5'
to 3') chemistry 5' 3' NO. 460209 T.sub.eA.sub.kA.sub.kATTGT Full
ekk kke 10 .sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e deoxy
556845 T.sub.eA.sub.kA.sub.kA.sup.xTTGT Deoxy/ ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 2-Thio 556846
T.sub.eA.sub.kA.sub.kAT.sup.xTGT Deoxy/ ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 2-Thio 556847
T.sub.eA.sub.kA.sub.kA.sup.xT.sup.xTGT Deoxy/ ekk kke 10
.sup.mCAT.sup.mCA.sub.k.sup.mC.sub.k.sup.mC.sub.e 2-Thio e =
2'-MOE, k = cEt, d = 2'-deoxyribonucleoside
TABLE-US-00104 TABLE 106 Comparison of inhibition of HTT mRNA
levels and selectivity of gap-interrupted modified oligonucleotides
with ISIS 460209 targeting HTT SNP ISIS IC.sub.50 (.mu.M)
Selectivity Gap Wing Chemistry NO Mut Wt (wt vs mut) chemistry 5'
3' 460209 0.30 0.99 3.3 Full deoxy ekk kke 556845 0.13 10.01 >77
Deoxy/2-Thio ekk kke 556846 0.19 0.48 2.5 Deoxy/2-Thio ekk kke
556847 0.45 9.9 >22 Deoxy/2-Thio ekk kke e = 2'-MOE, k = cEt, d
= 2'-deoxyribonucleoside
Example 69
Evaluation of Modified Oligonucleotides Targeting HTT SNP--In Vivo
Study
[0960] Additional modified oligonucleotides were selected and
tested for their effects on mutant and wild type HTT protein levels
in vivo targeting various SNP sites as illustrated below.
[0961] The gapmers and their motifs are described in Table 107. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
[0962] The gapmer, ISIS 460209 was included in the study as a
benchmark oligonucleotide against which the potency and selectivity
of the modified oligonucleotides could be compared. A non-allele
specific oligonucleotide, ISIS 387898, was used as a positive
control.
[0963] Hu97/18 mice, the first murine model of HD that fully
genetically recapitulates human HD were used in the study. They
were generated in Hayden's lab by cross bred BACHD, YAC 18 and Hdh
(-/-) mice.
[0964] Hu97/18 mice were treated with 300 .mu.g of modified
oligonucleotides by a single unilateral intracerebroventricular
(ICV) bolus injection. This treatment group consisted of 4
animals/oligonucleotide. The control group received a 10 .mu.l
bolus injection of sterile PBS and consisted of 4 animals.
[0965] Animals were sacrificed at 4 weeks post-injection. The
second most anterior 2 mm coronal slab for each brain hemisphere
was collected using a 2 mm rodent brain matrix. The remaining
portion of the brain was post-fixed in 4% paraformaldehyde,
cryoprotected in 30% sucrose and sectioned into 25 .mu.m coronal
sections for immunohistochemical analysis.
[0966] The HTT protein levels were analyzed by high molecular
weight western blot (modified from Invitrogen's NuPAGE Bis-Tris
System Protocol). The tissue was homogenized in ice cold SDP lysis
buffer. 40 .mu.g of total protein lysate was resolved on 10%
low-BIS acrylamide gels (200:1 acrylamide:BIS) with tris-glycine
running buffer (25 mM Tris, 190 mM Glycince, 0.1% SDS) containing
10.7 mM .beta.-mercaptoethanol added fresh. Gels were run at 90V
for 40 min through the stack, then 190V for 2.5 h, or until the 75
kDa molecular weight marker band was at the bottom of the gel.
Proteins were transferred to nitrocellulose at 24V for 2 h with
NuPage transfer buffer (Invitrogen: 25 mM Bicine, 25 mM Bis-Tris,
1.025 mM EDTA, 5% MeOH, pH 7.2). Membranes were blocked with 5%
milk in PBS, and then blotted for HTT with MAB2166 (1:1000,
millipore). Anti-calnexin (Sigma C4731) immunoblotting was used as
loading control. Proteins were detected with IR dye 800CW goat
anti-mouse (Rockland 610-131-007) and AlexaFluor 680 goat
anti-rabbit (Molecular Probes A21076)-labeled secondary antibodies,
and the LiCor Odyssey Infrared Imaging system.
[0967] The results in Table 108 are presented as the average
percent of HTT protein levels for each treatment group, normalized
to PBS-treated control and is denoted as "% UTC". The percent of
mutant HTT protein levels is denoted as "mut". The percent of
wild-type HTT protein levels is denoted as "wt". Selectivity was
also evaluated and measured by dividing the percent of wild-type
HTT protein levels vs. the percent of the mutant HTT protein
levels.
[0968] As illustrated in Table 108, treatment with the newly
designed oligonucleotides, ISIS 476333 and 460085 showed
improvement in potency and selectivity in inhibiting mutant HTT
protein levels as compared to the parent gapmer, 460209. Comparable
or a slight loss in potency and/or selectivity was observed for the
remaining oligonucleotides.
TABLE-US-00105 TABLE 107 Modified oligonucleotides targeting HTT
rs7685686, rs4690072 and rs363088 in Hu97/18 mice Wing SEQ ISIS
Chemistry ID NO Sequence (5' to 3') Motif 5' 3' NO. 387898
C.sub.eT.sub.eC.sub.eG.sub.eA.sub.eCTAAAGCAGGA.sub.eT.sub.eT.sub.eT-
.sub.eC.sub.e 5-10-5 e5 e5 79 460209
T.sub.eA.sub.kA.sub.kATTGTCATCA.sub.kC.sub.kC.sub.e 3-9-3 ekk kke
10 435879
AeA.sub.eT.sub.eA.sub.eA.sub.eATTGTCATCA.sub.eC.sub.eC.sub.eA.sub.e-
G.sub.e 5-9-5 e5 e5 80 476333
A.sub.eT.sub.kA.sub.eA.sub.kATTGTCATCA.sub.kC.sub.eCkA.sub.e 4-9-4
ekek keke 32 435874
C.sub.eA.sub.eC.sub.eA.sub.eG.sub.eTGCTACCCAA.sub.eC.sub.eC.sub.eT.-
sub.eT.sub.e 5-9-5 e5 e5 81 435871
T.sub.eC.sub.eA.sub.eC.sub.eA.sub.eGCTATCTTCT.sub.eC.sub.eA.sub.eT.-
sub.eC.sub.e 5-9-5 e5 e5 82 460085
A.sub.eT.sub.eA.sub.eA.sub.eA.sub.eTTGTCATC.sub.eA.sub.eC.sub.eC.su-
b.eA.sub.e 5-7-5 e5 e5 32 e = 2'-MOE (e.g. e5 = eeeee), k = cEt
TABLE-US-00106 TABLE 108 Effects of modified oligonucleotides on
mutant and wild type HTT protein levels in Hu97/18 mice Dosage %
UTC Selectivity ISIS NO SNP site (.mu.g) mut wt (wt vs mut) PBS --
300 100 100 1 387898 -- 300 23.76 25.66 1 460209 rs7685686 300
18.16 48.99 2.7 435879 rs7685686 300 41.48 73.11 1.8 476333
rs7685686 300 6.35 22.05 3.5 460085 rs7685686 300 2.9 40.1 13.8
435874 rs4690072 300 44.18 76.63 1.7 435871 rs363088 300 33.07
89.30 2.7
Example 70
Evaluation of ISIS 435871 in Central Nervous System (CNS) Targeting
HTT Rs363088--In Vivo Study
[0969] A modified oligonucleotide from Example 68, ISIS 435871 was
selected and tested for its effects on mutant and wild type HTT
protein levels in the CNS in vivo targeting rs363088.
[0970] Hu97/18 mouse was treated with 300 .mu.g of ISIS 435871 by a
single unilateral intracerebroventricular (ICV) bolus injection.
The animal was sacrificed at 4 weeks post-injection. Regional CNS
structures were then micro-dissected including bilateral samples
from the most anterior portion of cortex (Cortex 1), an
intermediate section of cortex (Cortex 2), the most posterior
section of cortex (Cortex 3), the striatum, the hippocampus, the
cerebellum, and a 1 cm section of spinal cord directly below the
brain stem. Tissue was homogenized and assessed for mutant and
wild-type HTT levels by Western blotting using the procedures as
described in Example 69. The results are presented below. As no
untreated or vehicle treated control is shown, HTT intensity of
each allele is expressed as a ratio of calnexin loading control
intensity. The ratio of the mutant HTT to the wt HTT in the treated
animal was determined and is denoted as "wt/mut". Having a ratio
higher than 1 is indicative of allele-specific silencing.
[0971] As illustrated in Table 109, a single unilateral ICV bolus
injection of the modified antisense oligonucleotide showed
selective HTT silencing throughout the CNS except in the
cerebellum, where the antisense oligonucleotide did not distribute
evenly.
TABLE-US-00107 TABLE 109 Effects of ISIS 435871 on mutant and wild
type HTT protein levels in CNS targeting rs363088 in Hu97/18 mice
HTT intensity/calnexin intensity Tissue wt mut wt/mut Cortex 1
0.032 0.014 2.29 Cortex 2 0.027 0.009 3 Cortex 3 0.023 0.007 3.29
Striatum 0.030 0.012 2.5 Hippocampus 0.016 0.006 2.67 Cerebellum
0.023 0.019 1.21 Spinal Cord 0.014 0.007 2
Example 71
Evaluation of Modified Oligonucleotides Targeting HTT Rs7685686--In
Vivo Study
[0972] Several modified oligonucleotides from Examples 43, 51, 52,
53 and 66 were selected and tested for their effects on mutant and
wild type HTT protein levels in vivo targeting HTT rs7685686.
[0973] The gapmer, ISIS 460209 was included in the study as a
benchmark oligonucleotide against which the potency and selectivity
of the modified oligonucleotides could be compared.
[0974] Hu97/18 mice were treated with 300 .mu.g of modified
oligonucleotides by a single unilateral intracerebroventricular
(ICV) bolus injection. This treatment group consisted of 4
animals/oligonucleotide. The control group received a 10 .mu.l
bolus injection of sterile PBS and consisted of 4 animals.
[0975] Animals were sacrificed at 4 weeks post-injection. The
second most anterior 2 mm coronal slab for each brain hemisphere
was collected using a 2 mm rodent brain matrix. The HTT protein
levels were analyzed in the same manner as described in Example 69
and the results are presented below.
[0976] The results in Table 110 are presented as the average
percent of HTT protein levels for each allele and treatment group,
normalized to PBS-treated control and is denoted as "% UTC". The
percent of mutant HTT protein levels is denoted as "mut". The
percent of wild-type HTT protein levels is denoted as "wt".
[0977] As shown in Table 110, each of the newly designed
oligonucleotides showed improvement in selective inhibition of
mutant HTT protein levels as compared to ISIS 460209. ISIS 550913
and 540095 showed improvement in potency while the remaining
modified oligonucleotides showed comparable or a slight decrease in
potency as compared to the parent gapmer.
TABLE-US-00108 TABLE 110 Effects of modified oligonucleotides on
mutant and wild type HTT protein levels targeting rs7685686 in
Hu97/18 mice Wing SEQ ISIS % UTC chemistry Gap ID NO mut wt Motif
5' 3' chemistry NO PBS 100 100 -- -- -- -- -- 460209 18.16 48.99
3-9-3 ekk kke Full deoxy 10 550913 9.31 34.26 5-9-5 kkekk kkekk
Full deoxy 27 540095 12.75 106.05 2-9-4 ek kkke Full deoxy 65
551429 19.07 108.31 5-7-3 eeekk kke Full deoxy 10 540094 24.68
87.56 2-9-4 ek kkke Full deoxy 67 540096 24.89 98.26 2-9-4 ek kkke
Full deoxy 68 540108 28.34 85.62 5-7-5 eeekk kkeee Full deoxy 23 e
= 2'-MOE, k = cEt
Example 72
Evaluation of Modified Oligonucleotides Targeting HTT Rs7685686--In
Vivo Study
[0978] Several modified oligonucleotides selected from Examples 57,
58, 61 and 62 were tested and evaluated for their effects on mutant
and wild type HTT protein levels in vivo targeting HTT
rs7685686.
[0979] Hu97/18 mice were treated with 300 .mu.g of modified
oligonucleotides by a single unilateral intracerebroventricular
(ICV) bolus injection and the control group received a 10 .mu.l
bolus injection of sterile PBS. Each treatment group consisted of 4
animals.
[0980] Animals were sacrificed at 4 weeks post-injection. The
second most anterior 2 mm coronal slab for each brain hemisphere
was collected using a 2 mm rodent brain matrix. The HTT protein
levels were analyzed in the same manner as described in Example 69.
The in vivo study for ISIS 575008 and 571069 marked with an
asterisk (*) was performed independently and the results are
presented below.
[0981] The results in Table 111 are presented as the average
percent of HTT protein levels for each allele and treatment group,
normalized to PBS-treated control and is denoted as "% UTC". The
percent of mutant HTT protein levels is denoted as "mut". The
percent of wild-type HTT protein levels is denoted as "wt".
[0982] As illustrated in Table 111, selective inhibition of mut HTT
protein levels was achieved with the newly designed oligonucleotide
treatment as compared to PBS treated control.
TABLE-US-00109 TABLE 111 Effects of modified oligonucleotides on
mutant and wild type HTT protein levels targeting rs7685686 in
Hu97/18 mice Wing SEQ ISIS % UTC chemistry Gap ID NO mut wt Motif
5' 3' chemistry NO PBS 100 100 -- -- -- -- -- 575007 26.9 104.5
3-9-3 ekk kke Deoxy/cEt 10 575008* 21.7 105.9 5-7-3 ekkkk kke
Deoxy/cEt 10 566267 32.8 109.3 3-9-3 ekk kke Deoxy/F- 10 HNA 571036
30.3 103.3 6-7-4 ekekek keke Full deoxy 32 571037 32.8 111.9 6-7-4
eeeekk keke Full deoxy 32 571069* 29.4 109.8 6-7-4 eeeekk kkee Full
deoxy 32 e = 2'-MOE, k = cEt
Example 73
Evaluation of Modified Oligonucleotides Targeting HTT Rs7685686--In
Vivo Dose Response Study
[0983] ISIS 476333, 435871, 540108, 575007 and 551429 from previous
examples were selected and evaluated at various doses for their
effect on mutant and wild type HTT protein levels in vivo targeting
HTT rs7685686.
[0984] Hu97/18 mice were treated with various doses of modified
oligonucleotides as presented in Table 112 by a single unilateral
intracerebroventricular (ICV) bolus injection. This treatment group
consisted of 4 animals/oligonucleotide. The control group received
a 10 .mu.l bolus injection of sterile PBS and consisted of 4
animals.
[0985] Animals were sacrificed at 4 weeks post-injection. The
second most anterior 2 mm coronal slab for each brain hemisphere
was collected using a 2 mm rodent brain matrix. The HTT protein
levels were analyzed in the same manner as described in Example 69.
The dose response study was performed independently for each
modified oligonucleotide and the results are presented below.
[0986] The results in Table 112 are presented as the average
percent of HTT protein levels for each allele and treatment group,
normalized to PBS-treated control and is denoted as "% UTC". The
percent of mutant HTT protein levels is denoted as "mut". The
percent of wild-type HTT protein levels is denoted as "wt".
[0987] As illustrated in Table 112, selective inhibition of mut HTT
protein levels was achieved in a dose-dependent manner for the
newly designed oligonucleotides.
TABLE-US-00110 TABLE 112 Dose-dependent effect of modified
oligonucleotides on mutant and wild type HTT protein levels
targeting rs7685686 in Hu97/18 mice Dosage % UTC SEQ ISIS NO
(.mu.g) mut wt Motif ID NO. PBS 0 100 100 -- 476333 50 48.7 115
4-9-4 32 150 23.1 53.3 (ekek-d9-keke) 300 8.8 36.7 435871 75 114
118 5-9-5 82 150 47.3 80.3 (e5-d9-e5) 300 33 89.3 500 36 97.5
540108 75 30.5 71.7 5-7-5 32 150 22 81 (eeekk-d7-kkeee) 300 8.6
59.6 575007 150 41.5 110.7 3-9-3 10 300 29 119.4 (ekk-d-k-d7-kke)
(deoxy gap interrupted with cEt) 551429 75 58 101.3 5-7-3 10 150
36.2 110.4 (eeekk-d7-kke) 300 19.7 107.8 e = 2'-MOE (e.g. e5 =
eeeee), k = cEt, d = 2'-deoxyribonucleoside
Example 74
Modified Oligonucleotides Targeting Huntingtin (HTT) Single
Nucleotide Polymorphism (SNP)
[0988] A series of modified oligonucleotides was designed based on
a parent gapmer, ISIS 460209, wherein the central gap region
contains nine .beta.-D-2'-deoxyribonucleosides. The modified
oligonucleotides were designed by introducing a 5'-(R)-Me DNA
modification within the central gap region. The 5'-(R)-Me DNA
containing oligonucleotides were tested for their ability to
selectively inhibit mutant (mut) HTT mRNA expression levels
targeting rs7685686 while leaving the expression of the wild-type
(wt) intact. The potency and selectivity of the modified
oligonucleotides were evaluated and compared to ISIS 460209.
[0989] The position on the oligonucleotides opposite to the SNP
position, as counted from the 5'-terminus is position 8.
[0990] The modified oligonucleotides were created with a 3-9-3
motif and are described in Table 113. The internucleoside linkages
throughout each gapmer are phosphorothioate (P.dbd.S) linkages.
Nucleosides followed by a subscript "d" are
.beta.-D-2'-deoxyribonucleosides. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt). Nucleosides
followed by a subscript "z" indicates a 5'-(R)-Me DNA. ".sup.mC"
indicates a 5-methyl cytosine nucleoside.
[0991] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with a single dose at 2 .mu.M
concentration of the modified oligonucleotide. After a treatment
period of approximately 24 hours, cells were washed with DPBS
buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN.
[0992] The IC.sub.50s and selectivities as expressed in "fold" were
measured and calculated using methods described previously in
Example 41. As illustrated in Table 114, treatment with the newly
designed oligonucleotides showed comparable or a slight increase in
potency and/or selectivity as compared to ISIS 460209.
TABLE-US-00111 TABLE 113 Gap-interrupted oligonucleotides
comprising 5'-(R)-Me DNA targeting HTT SNP Wing SEQ ISIS chemistry
ID NO. Sequence (5' to 3') Gap chemistry 5' 3' NO. 460209
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e Full
deoxy ekk kke 10 556848
T.sub.eA.sub.kA.sub.kA.sub.zT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
Deoxy/5'-(R)-Me DNA ekk kke 10 556849
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.zT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
Deoxy/5'-(R)-Me DNA ekk kke 10 556850
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.zG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
Deoxy/5'-(R)-Me DNA ekk kke 10 e = 2'-MOE, k = cEt
TABLE-US-00112 TABLE 114 Comparison of inhibition of HTT mRNA
levels and selectivity of gap- interrupted oligonucleotides with
ISIS 460209 targeting HTT SNP IC.sub.50 Wing ISIS (.mu.M)
Selectivity Gap chemistry NO. Mut Wt (wt vs mut) chemistry 5' 3'
460209 0.30 0.99 3.3 Full deoxy ekk kke 556848 0.15 0.6 4.0
Deoxy/5'-(R)- ekk kke Me DNA 556849 0.16 0.46 2.9 Deoxy/5'-(R)- ekk
kke Me DNA 556850 0.33 0.96 2.9 Deoxy/5'-(R)- ekk kke Me DNA e =
2'-MOE, k = cEt
Example 75
Modified Oligonucleotides Comprising 5'-(R)- or 5'-(S)-Me DNA
Modification Targeting HTT SNP
[0993] A series of modified oligonucleotides was designed based on
a parent gapmer, ISIS 460209, wherein the central gap region
contains nine .beta.-D-2'-deoxyribonucleosides. The modified
oligonucleotides were designed by introducing 5'-(S)- or 5'-(R)-Me
DNA modification slightly upstream or downstream (i.e. "microwalk")
within the central gap region. The gapmers were created with a
3-9-3 motif and were tested for their ability to selectively
inhibit mutant (mut) HTT mRNA expression. The potency and
selectivity of the modified oligonucleotides were evaluated and
compared to ISIS 460209.
[0994] The position on the oligonucleotides opposite to the SNP
position, as counted from the 5'-terminus is position 8.
[0995] The modified oligonucleotides and their motifs are described
in Table 115. The internucleoside linkages throughout each gapmer
are phosphorothioate (P.dbd.S) linkages. Nucleosides followed by a
subscript "d" are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" indicates a 2'-O-methoxyethyl (MOE)
modified nucleoside. Nucleosides followed by a subscript "k"
indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt).
Nucleosides followed by a subscript "v" indicates a 5'-(S)-Me DNA.
Nucleosides followed by a subscript "z" indicates a 5'-(R)-Me DNA.
".sup.mC" indicates a 5-methyl cytosine nucleoside.
[0996] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used. Cultured
GM04022 cells at a density of 25,000 cells per well were
transfected using electroporation with 0.1, 0.4, 1.1, 3.3 and 10
.mu.M concentrations of modified oligonucleotides. After a
treatment period of approximately 24 hours, cells were washed with
DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 uL 2.times.PCR buffer, 101 uL primers (300 uM from
ABI), 1000 uL water and 40.4 uL RT MIX. To each well was added 15
uL of this mixture and 5 uL of purified RNA. The mutant and
wild-type HTT mRNA levels were measured simultaneously by using two
different fluorophores, FAM for mutant allele and VIC for wild-type
allele. The HTT mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN and the results are presented
below.
[0997] The IC.sub.50s and selectivities as expressed in "fold" were
measured and calculated using methods described previously in
Example 41. The results in Table 116 demonstrated that each of the
newly designed oligonucleotides comprising 5'-(S)- or 5'-(R)-Me DNA
within the central gap region achieved improvement in potency and
selectivity as compared to the parent gapmer, ISIS 460209.
TABLE-US-00113 TABLE 115 Gap-interrupted oligonucleotides
comprising 5'-(S)- or 5'-(R)-Me DNA targeting HTT SNP Wing SEQ ISIS
Gap Chemistry ID NO Sequence (5' to 3') Motif Chemistry 5' 3' NO
460209
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Full deoxy ekk kke 10 589429
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.vT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 Me DNA 589430
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.vG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 Me DNA 589431
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.v.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 Me DNA 589432
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.v.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 Me DNA 594588
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.vT.sub.vG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 Me DNA 556848
T.sub.eA.sub.kA.sub.kA.sub.zT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 556849
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.zT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 556850
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.zG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 539558
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.z.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 594160
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.zA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 594161
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.zT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 589433
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.z.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 594162
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.zA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA 594589
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.zT.sub.zG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 Me DNA e = 2'-MOE; k = cEt
TABLE-US-00114 TABLE 116 Comparison of inhibition of HTT mRNA
levels and selectivity of gap- interrupted oligonucleotides with
ISIS 460209 targeting HTT SNP ISIS IC.sub.50 (.mu.M) Selectivity
Wing Chemistry NO. Mut Wt (wt vs. mut) Motif Gap Chemistry 5' 3'
460209 1.2 1.4 1.2 3-9-3 Full deoxy ekk kke 589429 0.22 3.3 15
3-9-3 Deoxy/5'-(S)-Me DNA ekk kke 589430 0.22 >10 >45.5 3-9-3
Deoxy/5'-(S)-Me DNA ekk kke 589431 0.16 1.9 11.9 3-9-3
Deoxy/5'-(S)-Me DNA ekk kke 589432 0.23 >10 >43.5 3-9-3
Deoxy/5'-(S)-Me DNA ekk kke 594588 0.81 >10 >12.3 3-9-3
Deoxy/5'-(S)-Me DNA ekk kke 556848 0.16 1.8 11.3 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 556849 0.14 1.1 7.9 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 556850 0.22 1.7 7.7 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 539558 0.38 3.8 10 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 594160 0.28 3.3 11.8 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 594161 0.28 >10 >35.7 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 589433 0.27 4.4 16.3 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 594162 0.27 3.5 13.0 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke 594589 0.48 4.4 9.2 3-9-3
Deoxy/5'-(R)-Me DNA ekk kke e = 2'-MOE; k = cEt
Example 76
Inhibition of HTT mRNA Levels Targeting SNP by Modified
Oligonucleotides
[0998] Additional modified oligonucleotides were designed in a
similar manner as the antisense oligonucleotides described in
Example 75. Various chemical modifications were introduced slightly
upstream or downstream (i.e. "microwalk") within the central gap
region. The gapmers were created with a 3-9-3 motif and were tested
for their ability to selectively inhibit mutant (mut) HTT mRNA
expression. The position on the oligonucleotides opposite to the
SNP position, as counted from the 5'-terminus is position 8. The
potency and selectivity of the modified oligonucleotides were
evaluated and compared to ISIS 460209.
[0999] The modified oligonucleotides and their motifs are described
in Table 117. The internucleoside linkages throughout each gapmer
are phosphorothioate (P.dbd.S) linkages. Nucleosides followed by a
subscript "d" are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" indicates a 2'-.beta.-methoxyethyl
(MOE) modified nucleoside. Nucleosides followed by a subscript "k"
indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt).
Nucleosides followed by a subscript "b" indicates a 5'-(R)-allyl
DNA. Nucleosides followed by a subscript "c" indicates a
5'-(S)-allyl DNA. Nucleosides followed by a subscript "g" indicates
a 5'-(R)-hydroxyethyl DNA. Nucleosides followed by a subscript "i"
indicates a 5'-(S)-hydroxyethyl DNA. ".sup.mC" indicates a 5-methyl
cytosine nucleoside.
[1000] The modified oligonucleotides were tested in vitro using
heterozygous fibroblast GM04022 cell line. The transfection method
and analysis of HTT mRNA levels adjusted according to total RNA
content, as measured by RIBOGREEN were performed in the same manner
as described in Example 76. The IC.sub.50s and selectivities as
expressed in "fold" were measured and calculated using methods
described previously and the results are shown below. As presented
in Table 118, several modified oligonucleotides achieved greater
than 4.5 fold selectivity in inhibiting mutant HTT mRNA levels and,
therefore, are more selective than ISIS 460209.
TABLE-US-00115 TABLE 117 Gap-interrupted oligonucleotides
comprising 5'-substituted DNA targeting HTT SNP Wing SEQ ISIS Gap
Chemistry Chemisty ID NO Sequence (5' to 3') Motif (mod position)
5' 3' NO 460209
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Full deoxy ekk kke 10 589414
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.bT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 allyl DNA (pos 5) 589415
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.bG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 allyl DNA (pos 6) 589416
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.b.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 allyl DNA (pos 8) 589417
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.b.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 allyl DNA (pos 11) 589418
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.cT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 allyl DNA (pos 5) 589419
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.cG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 allyl DNA (pos 6) 589420
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.c.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 allyl DNA (pos 8) 589421
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.c.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 allyl DNA (pos 11) 589422
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.gT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 hydroxyethyl DNA (pos 5) 589423
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.gG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 hydroxyethyl DNA (pos 6) 589424
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.g.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 hydroxyethyl DNA (pos 8) 589437
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.g.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(R)- ekk kke 10 hydroxyethyl DNA (pos 11) 589426
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.iT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 hydroxyethyl DNA (pos 5) 589427
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.iG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 hydroxyethyl DNA (pos 6) 589428
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.i.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sup.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 hydroxyethyl DNA (pos 8) 589425
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.i.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/5'-(S)- ekk kke 10 hydroxyethyl DNA (pos 11) e =
2'-MOE; k = cEt
TABLE-US-00116 TABLE 118 Comparison of inhibition of HTT mRNA
levels and selectivity of gap- interrupted oligonucleotides with
ISIS 460209 targeting HTT SNP ISIS IC.sub.50 (.mu.M) Selectivity
Gap Chemistry Wing Chemistry NO Mut Wt (wt vs. mut) (mod position)
Motif 5' 3' 460209 0.47 2.1 4.5 Full deoxy 3-9-3 ekk kke 589414 1.0
7.6 7.6 Deoxy/5'-(R)-Allyl DNA 3-9-3 ekk kke (pos 5) 589415 1.4
>10 >7.1 Deoxy/5'-(R)-Allyl DNA 3-9-3 ekk kke (pos 6) 589416
2.7 >10 >3.7 Deoxy/5'-(R)-Allyl DNA 3-9-3 ekk kke (pos 8)
589417 5.4 >10 >1.9 Deoxy/5'-(R)-Allyl DNA 3-9-3 ekk kke (pos
11) 589418 1.2 >10 >8.3 Deoxy/5'-(S)-Allyl DNA 3-9-3 ekk kke
(pos 5) 589419 1.1 >10 >9.1 Deoxy/5'-(S)-Allyl DNA 3-9-3 ekk
kke (pos 6) 589420 3.2 >10 >3.1 Deoxy/5'-(S)-Allyl DNA 3-9-3
ekk kke (pos 8) 589421 2.0 >10 >5.0 Deoxy/5'-(S)-Allyl DNA
3-9-3 ekk kke (pos 11) 589422 0.73 3.2 4.4 Deoxy/5'-(R)- 3-9-3 ekk
kke Hydroxyethyl DNA (pos 5) 589423 0.92 9.2 10 Deoxy/5'-(R)- 3-9-3
ekk kke Hydroxyethyl DNA (pos 6) 589424 0.21 4.4 21 Deoxy/5'-(R)-
3-9-3 ekk kke Hydroxyethyl DNA (pos 8) 589437 0.73 >10.2 >14
Deoxy/5'-(R)- 3-9-3 ekk kke Hydroxyethyl DNA (pos 11) 589426 0.91
5.1 5.6 Deoxy/5'-(5> 3-9-3 ekk kke Hydroxyethyl DNA (pos 5)
589427 0.91 >10 >11 Deoxy/5'-(S)- 3-9-3 ekk kke Hydroxyethyl
DNA (pos 6) 589428 1.1 >11 >10 Deoxy/5'-(S)- 3-9-3 ekk kke
Hydroxyethyl DNA (pos 8) 589425 1.5 >10.5 >7 Deoxy/5'-(S)-
3-9-3 ekk kke Hydroxyethyl DNA (pos 11) e = 2'-MOE; k = cEt
Example 77
Modified Oligonucleotides Comprising 5'-(R)-Me DNA(s) Targeting
Human C-Reactive Protein (hCRP)
[1001] A series of modified oligonucleotides were designed based on
ISIS 353512, wherein the central gap region contains fourteen
.beta.-D-2'-deoxyribonucleoside. These modified oligonucleotides
were designed by replacement of two or three
.beta.-D-2'-deoxyribonucleoside in the 14 nucleoside gap region
with 5'-(R)-Me DNA(s). The thermal stability (T.sub.m) and potency
of these modified oligonucleotides targeting hCRP was evaluated.
The 3-14-3 MOE gapmer, ISIS 353512 and 5-10-5 MOE gapmer, ISIS
330012 were included in the study for comparison.
[1002] The modified oligonucleotides and their motifs are described
in Table 119. Each internucleoside linkage is a phosphorothioate
(P.dbd.S) except for nucleosides followed by a subscript "o"which
are phosphodiester internucleoside linkages (P.dbd.O). Nucleosides
followed by a subscript "d" indicates a
.beta.-D-2'-deoxyribonucleoside. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "z" indicates a
5'-(R)-Me DNA. ".sup.mC" indicates a 5-methyl cytosine modified
nucleoside. Underlined nucleosides indicate a region comprising
5'-(R)-Me DNA modification.
Thermal Stability Assay
[1003] The modified oligonucleotides were evaluated in thermal
stability (T.sub.m) assay. The T.sub.m's were measured using the
method described herein. A Cary 100 Bio spectrophotometer with the
Cary Win UV Thermal program was used to measure absorbance vs.
temperature. For the T.sub.m experiments, oligonucleotides were
prepared at a concentration of 8 .mu.M in a buffer of 100 mM Na+,
10 mM phosphate, 0.1 mM EDTA, pH 7. Concentration of
oligonucleotides were determined at 85.degree. C. The
oligonucleotide concentration was 4 .mu.M with mixing of equal
volumes of test oligonucleotide and complimentary RNA strand.
Oligonucleotides were hybridized with the complimentary RNA strand
by heating duplex to 90.degree. C. for 5 min and allowed to cool at
room temperature. Using the spectrophotometer, T.sub.m measurements
were taken by heating duplex solution at a rate of 0.5 C/min in
cuvette starting @ 15.degree. C. and heating to 85.degree. C.
T.sub.m values were determined using Vant Hoff calculations
(A.sub.260 vs temperature curve) using non self-complementary
sequences where the minimum absorbance which relates to the duplex
and the maximum absorbance which relates to the non-duplex single
strand are manually integrated into the program. The results are
presented below.
Cell Culture and Transfection
[1004] The modified oligonucleotides were tested in vitro. Hep3B
cells were plated at a density of 40,000 cells per well and
transfected using electroporation with 0.009 .mu.M, 0.027 .mu.M,
0.082 .mu.M, 0.25 .mu.M, 0.74 .mu.M, 2.2 .mu.M, 6.7 .mu.M and 20
.mu.M concentrations of antisense oligonucleotides. After a
treatment period of approximately 16 hours, RNA was isolated from
the cells and hCRP mRNA levels were measured by quantitative
real-time PCR. Human CRP primer probe set RTS1887 was used to
measure mRNA levels. hCRP mRNA levels were adjusted according to
total RNA content, as measured by RIBOGREEN.RTM..
Analysis of IC.sub.50's
[1005] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is presented below and was calculated by
plotting the concentrations of oligonucleotides used versus the
percent inhibition of hCRP mRNA expression achieved at each
concentration, and noting the concentration of oligonucleotide at
which 50% inhibition of hCRP mRNA expression was achieved compared
to the control.
[1006] As illustrated in Table 120, treatment with the newly
designed oligonucleotides showed no improvement in potency as
compared to the controls, ISIS 353512 and 330012.
TABLE-US-00117 TABLE 119 Gap-interrupted oligonucleotides
comprising 5'-(R)-Me DNA targeting hCRP Wing SEQ ISIS Gap Chemistry
Linkage ID NO Sequence (5' to 3') Motif Chemistry 5' 3' backbone NO
353512
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.dA.sub.dT.sub.dT.sub.d-
T.sub.d.sup.mC.sub.dA.sub.d 3-14-3 Full deoxy eee eee Full PS 83
G.sub.dG.sub.dA.sub.dG.sub.dA.sub.d.sup.mC.sub.d.sup.mC.sub.dT.sub.eG.sub-
.eG.sub.e 546127
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.dA.sub.dT.sub.dT.sub.d-
T.sub.d.sup.mC.sub.doA.sub.zo 3-14-3 Deoxy/5'-(R)- eee eee Mixed 83
G.sub.zG.sub.dA.sub.dG.sub.dA.sub.d.sup.mC.sub.d.sup.mC.sub.dT.sub.eG.sub-
.eG.sub.e Me DNA PS/PO 544810
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.dA.sub.dT.sub.dT.sub.d-
T.sub.d.sup.mC.sub.dA.sub.d 3-14-3 Deoxy/5'-(R)- eee eee Mixed 83
G.sub.dG.sub.dA.sub.dG.sub.dA.sub.do.sup.mC.sub.zo.sup.mC.sub.zT.sub.eG.s-
ub.eG.sub.e Me DNA PS/PO 544806
T.sub.e.sup.mC.sub.e.sup.mC.sub.eo.sup.mC.sub.zoA.sub.zoT.sub.zT.su-
b.dT.sub.d.sup.mC.sub.dA.sub.d 3-14-3 Deoxy/5'-(R)- eee eee Mixed
83
G.sub.dG.sub.dA.sub.dG.sub.dA.sub.d.sup.mC.sub.d.sup.mC.sub.dT.sub.eG.sub-
.eG.sub.e Me DNA PS/PO 544807
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.dA.sub.dT.sub.doT.sub.-
zoT.sub.zo.sup.mC.sub.zA.sub.d 3-14-3 Deoxy/5'-(R)- eee eee Mixed
83
G.sub.dG.sub.dA.sub.dG.sub.dA.sub.d.sup.mC.sub.d.sup.mC.sub.dT.sub.eG.sub-
.eG.sub.e Me DNA PS/PO 544809
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.dA.sub.dT.sub.dT.sub.d-
T.sub.d.sup.mC.sub.dA.sub.d 3-14-3 Deoxy/5'-(R)- eee eee Mixed 83
G.sub.dG.sub.doA.sub.zoG.sub.zoA.sub.z.sup.mC.sub.d.sup.mC.sub.dT.sub.eG.-
sub.eG.sub.e Me DNA PS/PO 330012
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.eA.sub.eT.sub.dT.sub.d-
T.sub.d.sup.mC.sub.dA.sub.d 5-10-5 Full deoxy e5 e5 Full PS 83
G.sub.dG.sub.dA.sub.dG.sub.dA.sub.d.sup.mC.sub.e.sup.mC.sub.eT.sub.eG.sub-
.eG.sub.e e = 2'-MOE (e.g. e5 = eeeee)
TABLE-US-00118 TABLE 120 Effect of gap-interrupted oligonucleotide
treatment on Tm and hCRP inhibition Wing ISIS Tm IC.sub.50 Gap
Chemistry Linkage NO (.degree. C.) (.mu.M) Motif Chemistry 5' 3'
backbone 353512 66.7 1.1 3-14-3 Full deoxy eee eee Full PS 546127
65.9 2.5 3-14-3 Deoxy/5'-(R)- eee eee Mixed Me DNA PS/PO 544810
64.3 2.4 3-14-3 Deoxy/5'-(R)- eee eee Mixed Me DNA PS/PO 544806
62.8 2.8 3-14-3 Deoxy/5'-(R)- eee eee Mixed Me DNA PS/PO 544807
65.1 2.7 3-14-3 Deoxy/5'-(R)- eee eee Mixed Me DNA PS/PO 544809
64.2 5.0 3-14-3 Deoxy/5'-(R)- eee eee Mixed Me DNA PS/PO 330012
71.7 0.6 5-10-5 Full deoxy e5 e5 Full PS e = 2'-MOE (e.g. e5 =
eeeee), PS/PO = phosphorothioate/phosphodiester internucleoside
linkage
Example 78
Human Peripheral Blood Mononuclear Cells (hPBMC) Assay Protocol--In
Vitro
[1007] The hPBMC assay was performed using BD Vacutainer CPT tube
method. A sample of whole blood from volunteered donors with
informed consent at US HealthWorks clinic (Faraday & El Camino
Real, Carlsbad) was obtained and collected in 4-15 BD Vacutainer
CPT 8 ml tubes (VWR Cat.# BD362753). The approximate starting total
whole blood volume in the CPT tubes for each donor was recorded
using the PBMC assay data sheet.
[1008] The blood sample was remixed immediately prior to
centrifugation by gently inverting tubes 8-10 times. CPT tubes were
centrifuged at rt (18-25.degree. C.) in a horizontal (swing-out)
rotor for 30 min. at 1500-1800 RCF with brake off (2700 RPM Beckman
Allegra 6R). The cells were retrieved from the buffy coat interface
(between Ficoll and polymer gel layers); transferred to a sterile
50 ml conical tube and pooled up to 5 CPT tubes/50 ml conical
tube/donor. The cells were then washed twice with PBS (Ca.sup.++,
Mg.sup.++ free; GIBCO). The tubes were topped up to 50 ml and mixed
by inverting several times. The sample was then centrifuged at
330.times.g for 15 minutes at rt (1215 RPM in Beckman Allegra 6R)
and aspirated as much supernatant as possible without disturbing
pellet. The cell pellet was dislodged by gently swirling tube and
resuspended cells in RPMI+10% FBS+pen/strep (.about.1 ml/10 ml
starting whole blood volume). A 60 .mu.l sample was pipette into a
sample vial (Beckman Coulter) with 600 .mu.l VersaLyse reagent
(Beckman Coulter Cat# A09777) and was gently vortexed for 10-15
sec. The sample was allowed to incubate for 10 min. at rt and being
mixed again before counting. The cell suspension was counted on
Vicell XR cell viability analyzer (Beckman Coulter) using PBMC cell
type (dilution factor of 1:11 was stored with other parameters).
The live cell/ml and viability were recorded. The cell suspension
was diluted to 1.times.10.sup.7 live PBMC/ml in RPMI+10%
FBS+pen/strep.
[1009] The cells were plated at 5.times.10.sup.5 in 50 .mu.l/well
of 96-well tissue culture plate (Falcon Microtest). 50 .mu.l/well
of 2.times. concentration oligos/controls diluted in RPMI+10%
FBS+pen/strep. was added according to experiment template (100
.mu.l/well total). Plates were placed on the shaker and allowed to
mix for approx. 1 min. After being incubated for 24 hrs at
37.degree. C.; 5% CO.sub.2, the plates were centrifuged at
400.times.g for 10 minutes before removing the supernatant for MSD
cytokine assay (i.e. human IL-6, IL-10, IL-8 and MCP-1).
Example 79
Evaluation of the Proinflammatory Effects in hPBMC Assay for
5'-(R)-Me DNA Containing Modified Oligonucleotides--In Vitro
Study
[1010] The modified oligonucleotides targeting hCRP from Example 77
were tested and evaluated for the proinflammatory response in hPBMC
assay using methods described previously in Example 78. The hPBMCs
were isolated from fresh, volunteered donors and were treated with
modified oligonucleotides at 0, 0.0128, 0.064, 0.32, 1.6, 8, 40 and
200 .mu.M concentrations using the hPBMC assay protocol described
herein. After a 24 hr treatment, the cytokine levels were
measured.
[1011] IL-6 was used as the primary readout. The resulting IL-6
level was compared to the positive control, ISIS 353512 and
negative control, ISIS 104838. The results are presented in Table
121. As illustrated, reduction in proinflammatory response was
achieved with the newly designed oligonucleotides at doses
evaluated as compared to the positive control, ISIS 353512.
[1012] ISIS 104838 designated herein as SEQ ID NO: 84, is a 5-10-5
MOE gapmer with the following sequence,
G.sub.e.sup.mC.sub.eT.sub.eG.sub.eA.sub.eT.sub.dT.sub.dA.sub.dG.sub.dA.su-
b.dG.sub.dA.sub.dG.sub.dA.sub.dG.sub.dG.sub.eT.sub.e.sup.mC.sub.e.sup.mC.s-
ub.e.sup.mC.sub.e. Each internucleoside linkage is a
phosphorothioate (P.dbd.S). Each nucleoside followed by a subscript
"d" is a .beta.-D-2'-deoxyribonucleoside. Each ".sup.mC" is a
5-methyl cytosine modified nucleoside and each nucleoside followed
by a subscript "e" is a 2'-O-methoxyethyl(MOE) modified
nucleoside.
TABLE-US-00119 TABLE 121 Effect of gap-interrupted oligonucleotide
treatment on proinflammatory response in hPBMC Wing ISIS Conc. IL-6
Gap Chemistry Linkage NO (uM) (pg/mL) Motif Chemistry 5' 3'
backbone 353512 0 26.9 3-14-3 Full deoxy eee eee Full PS (pos
0.0128 10.6 control) 0.064 73.3 0.32 219.8 1.6 200.1 8 287.8 40
376.9 200 181.5 546127 0 11.5 3-14-3 Deoxy/5'-(R)- eee eee Mixed
0.0128 15.1 Me DNA PS/PO 0.064 19.0 0.32 37.3 1.6 67.5 8 86.3 40
111.2 200 83.1 544810 0 11.5 3-14-3 Deoxy/5'-(R)- eee eee Mixed
0.0128 13.9 Me DNA PS/PO 0.064 15.1 0.32 24.9 1.6 34.0 8 66.2 40
96.8 200 76.5 06/544806 0 11.3 3-14-3 Deoxy/5'-(R)- eee eee Mixed
0.0128 10.8 Me DNA PS/PO 0.064 25.8 0.32 15.6 1.6 25.4 8 52.3 40
69.3 200 341.7 06/544807 0 13.3 3-14-3 Deoxy/5'-(R)- eee eee Mixed
0.0128 13.7 Me DNA PS/PO 0.064 18.4 0.32 53.3 1.6 18.4 8 164.9 40
202.7 200 606.5 06/544809 0 10.8 3-14-3 Deoxy/5'-(R)- eee eee Mixed
0.0128 13.3 Me DNA PS/PO 0.064 14.3 0.32 34.8 1.6 62.3 8 100.9 40
213.1 200 225.0 06/330012 0 10.9 5-10-5 Full deoxy e5 e5 Full PS
0.0128 12.9 0.064 10.8 0.32 25.3 1.6 44.2 8 87.5 40 80.2 200 82.3
07/104838 0 9.3 5-10-5 Full deoxy e5 e5 Full PS (neg 0.0128 10.4
control) 0.064 17.6 0.32 30.1 1.6 53.9 8 124.8 40 94.5 200 89.3 e =
2'-MOE (e.g. e5 = eeeee)
Example 80
Evaluation of the Proinflammatory Effects in hPBMC Assay for a
Modified Oligonucleotide Comprising Methyl Thiophosphonate
Internucleoside Linkages--In Vitro Study
[1013] A modified oligonucleotide was designed based on the 3/14/3
MOE gapmer, ISIS 353512. This modified oligonucleotide was created
by having alternating methyl thiophosphonate
(--P(CH.sub.3)(.dbd.S)--) internucleoside linkages throughout the
gap region. The proinflammatory effect of the modified
oligonucleotide targeting hCRP was evaluated in hPBMC assay using
the protocol described in Example 78.
[1014] The modified oligonucleotide and its motif are described in
Table 122. Each internucleoside linkage is a phosphorothioate
(P.dbd.S) except for nucleosides followed by a subscript "w". Each
nucleoside followed by a subscript "w" indicates a methyl
thiophosphonate internucleoside linkage (--P(CH.sub.3)(.dbd.S)--).
Nucleosides followed by a subscript "d" is a
.beta.-D-2'-deoxyribonucleoside. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. ".sup.mC" indicates a 5-methyl cytosine modified
nucleoside.
[1015] The hPBMCs were isolated from fresh, volunteered donors and
were treated with modified oligonucleotides at 0, 0.0128, 0.064,
0.32, 1.6, 8, 40 and 200 .mu.M concentrations. After a 24 hr
treatment, the cytokine levels were measured.
[1016] IL-6 was used as the primary readout. The resulting IL-6
level was compared to the positive control oligonucleotide, ISIS
353512 and negative control, ISIS 104838. The results from two
donors denoted as "Donor 1" and "Donor 2" are presented in Table
123. As illustrated, reduction in proinflammatory response was
achieved with the newly designed oligonucleotide at doses evaluated
as compared to the positive control, ISIS 353512.
TABLE-US-00120 TABLE 122 Modified oligonucleotide comprising
alternating methyl thiophosphonate internucleoside linkages
throughout the gap region Wing SEQ ISIS Gap Chemistry ID NO
Sequence (5' to 3') Motif Chemistry 5' 3' NO 353512
T.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.dA.sub.dT.sub.dT.sub.d-
T.sub.d.sup.mC.sub.dA.sub.dG.sub.d 3-14-3 Full deoxy eee eee 83
G.sub.dA.sub.dG.sub.dA.sub.d.sup.mC.sub.d.sup.mC.sub.dT.sub.eG.sub.eG.sub-
.e 560221
T.sub.e.sup.mC.sub.e.sup.mC.sub.eC.sub.dwA.sub.dT.sub.dwT.sub.dT.su-
b.dw.sup.mC.sub.dA.sub.dwG.sub.dG.sub.dw 3-14-3 Deoxy/methyl eee
eee 83
A.sub.dG.sub.dwA.sub.dC.sub.dw.sup.mC.sub.dT.sub.eG.sub.eG.sub.e
thiophosphonate 104838
G.sub.e.sup.mC.sub.eT.sub.eG.sub.eA.sub.eT.sub.dT.sub.dA.sub.dG.sub-
.dA.sub.dG.sub.dA.sub.d 5-10-5 Full deoxy e5 e5 84
G.sub.dA.sub.dG.sub.dG.sub.eT.sub.e.sup.mC.sub.e.sup.mC.sub.e.sup.mC.sub.-
e e = 2'-MOE (e.g. e5 = eeeee)
TABLE-US-00121 TABLE 123 Effect of modified oligonucleotide
treatment on proinflammatory response in hPBMC assay Wing ISIS
Conc. IL-6 (Donor 1) IL-6 (Donor 2) Gap Chemistry NO (.mu.M)
(pg/mL) (pg/mL) Motif Chemistry 5' 3' 353512 0 6.3 7.8 3-14-3 Full
deoxy eee eee 0.0128 8.3 10.2 0.064 77.2 118.2 0.32 151.9 394.3 1.6
152.4 395.3 8 147.6 337.2 40 122.5 228.4 200 119.7 193.5 560221 0
5.6 7.6 3-14-3 Deoxy/methyl eee eee 0.0128 6.4 6.9 thiophosphonate
0.064 6.7 7.6 0.32 7.6 8.9 1.6 9.1 11.8 8 17.5 24.3 40 65.8 50.2
200 60.0 100.4 104838 0 5.8 7.3 5-10-5 Full deoxy e5 e5 0.0128 7.7
7.9 0.064 7.5 11.6 0.32 15.1 22.0 1.6 73.1 112.8 8 29.6 51.5 40
41.6 69.5 200 55.4 4018 e = 2'-MOE (e.g. e5 = eeeee)
Example 81
Modified Oligonucleotides Comprising Methyl Phosphonate
Internucleoside Linkage Targeting HTT SNP--In Vitro Study
[1017] ISIS 558255 and 558256 from Example 49 were selected and
evaluated for their effect on mutant and wild type HTT mRNA
expression levels targeting rs7685686. ISIS 46020 was included in
the study for comparison. The position on the oligonucleotides
opposite to the SNP position, as counted from the 5'-terminus is
position 8.
[1018] Heterozygous fibroblast GM04022 cell line was used for the
in vitro assay (from Coriell Institute). Cultured GM04022 cells at
a density of 25,000 cells per well were transfected using
electroporation with 0.12, 0.37, 1.1, 3.3 and 10 .mu.M
concentrations of modified oligonucleotides. After a treatment
period of approximately 24 hours, cells were washed with DPBS
buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 .mu.L 2.times.PCR buffer, 101 .mu.L primers (300
.mu.M from ABI), 1000 .mu.L water and 40.4 .mu.L RT MIX. To each
well was added 15 .mu.L of this mixture and 5 .mu.L of purified
RNA. The mutant and wild-type HTT mRNA levels were measured
simultaneously by using two different fluorophores, FAM for mutant
allele and VIC for wild-type allele. The HTT mRNA levels were
adjusted according to total RNA content, as measured by
RIBOGREEN.
[1019] The IC.sub.50s and selectivities as expressed in "fold" were
measured and calculated using methods described previously in
Example 41. As illustrated in Table 124, improvement in selectivity
and potency was achieved with modified oligonucleotides comprising
methyl phosphonate internucleoside linkage as compared to ISIS
460209.
TABLE-US-00122 TABLE 124 Comparison of selectivity in inhition of
HTT mRNA levels of antisense oligonucleotides with ISIS 460209
targeted to rs7685686 in GM4022 cells ISIS IC.sub.50 (.mu.M)
Selectivity Wing Chemistry SEQ NO Mut Wt (wt vs mut) Motif Gap
Chemistry 5' 3' ID NO 460209 0.30 0.99 3.3 3-9-3 Full deoxy ekk kke
10 558255 0.19 1.3 6.8 3-9-3 Deoxy/Methyl ekk kke 10 phosphonate
558256 0.20 1.3 6.5 3-9-3 Deoxy/Methyl ekk kke 10 phosphonate e =
2'-MOE (e.g. e5 = eeeee), k = cEt
Example 82
Modified Oligonucleotides Comprising Methyl Phosphonate or
Phosphonoacetate Internucleoside Linkage(s) Targeting HTT SNP
[1020] A series of modified oligonucleotides were designed based on
ISIS 460209 wherein the gap region contains nine
.beta.-D-2'-deoxyribonucleosides. The modified oligonucleotides
were synthesized to include one or more methyl phosphonate or
phosphonoacetate internucleoside linkage modifications within the
gap region. The oligonucleotides with modified phosphorus
containing backbone were tested for their ability to selectively
inhibit mutant (mut) HTT mRNA expression levels targeting rs7685686
while leaving the expression of the wild-type (wt) intact. The
potency and selectivity of the modified oligonucleotides were
evaluated and compared to ISIS 460209.
[1021] The position on the oligonucleotides opposite to the SNP
position, as counted from the 5'-terminus is position 8.
[1022] The modified oligonucleotides and their motifs are described
in Table 125. Each internucleoside linkage is a phosphorothioate
(P.dbd.S) except for the internucleoside linkage having a subscript
"x" or "y". Each nucleoside followed by a subscript "x" indicates a
methyl phosphonate internucleoside linkage
(--P(CH.sub.3)(.dbd.O)--). Each nucleoside followed by a subscript
"y" indicates a phosphonoacetate internucleoside linkage
(--P(CH.sub.2CO.sub.2.sup.-)(.dbd.O)--). Nucleosides followed by a
subscript "d" is a .beta.-D-2'-deoxyribonucleoside. Nucleosides
followed by a subscript "e" indicates a 2'-O-methoxyethyl (MOE)
modified nucleoside. Nucleosides followed by a subscript "k"
indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt).
".sup.mC" indicates a 5-methyl cytosine modified nucleoside.
[1023] The modified oligonucleotides were tested in vitro.
Heterozygous fibroblast GM04022 cell line was used (from Coriell
Institute). Cultured GM04022 cells at a density of 25,000 cells per
well were transfected using electroporation with 0.12, 0.37, 1.1,
3.3 and 10 .mu.M concentrations of modified oligonucleotides. After
a treatment period of approximately 24 hours, cells were washed
with DPBS buffer and lysed. RNA was extracted using Qiagen RNeasy
purification and mRNA levels were measured by quantitative
real-time PCR using ABI assay C.sub.--2229297.sub.--10 which
measures at dbSNP rs362303. RT-PCR method in short; A mixture was
made using 2020 .mu.L 2.times.PCR buffer, 101 .mu.L primers (300
.mu.M from ABI), 1000 uL water and 40.4 .mu.L RT MIX. To each well
was added 15 .mu.L of this mixture and 5 .mu.L of purified RNA. The
mutant and wild-type HTT mRNA levels were measured simultaneously
by using two different fluorophores, FAM for mutant allele and VIC
for wild-type allele. The HTT mRNA levels were adjusted according
to total RNA content, as measured by RIBOGREEN.
[1024] The IC.sub.50s and selectivities as expressed in "fold" were
measured and calculated using methods described previously in
Example 41. As illustrated in Table 126, most of the newly design
oligonucleotides achieved improvement in selectivity while
maintaining potency as compared to ISIS 460209.
TABLE-US-00123 TABLE 125 Modified oligonucleotides comprising
methyl phosphonate or phosphonoacetate internucleoside linkage(s)
targeting HTT SNP Wing SEQ ISIS Chemistry ID NO Sequence (5' to 3')
Motif Gap Chemistry 5' 3' NO 460209
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Full deoxy ekk kke 10 566276
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dxT.sub.d.sup.mC.su-
b.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/Methyl ekk kke 10 phosphonate 566277
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.dx.sup.mC.su-
b.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/Methyl ekk kke 10 phosphonate 566278
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dxA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/Methyl ekk kke 10 phosphonate 566279
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dxT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/Methyl ekk kke 10 phosphonate 566280
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.dx.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/Methyl ekk kke 10 phosphonate 566283
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dxT.sub.dxG.sub.dT.sub.d.sup.mC.s-
ub.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/Methyl ekk kke 10 phosphonate 573815
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dyT.sub.dG.sub.dT.sub.d.sup.mC.su-
b.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/ ekk kke 10 Phosphonoacetate 573816
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dyG.sub.dT.sub.d.sup.mC.su-
b.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/ ekk kke 10 Phosphonoacetate 573817
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.dy.sup.mC.su-
b.dA.sub.dT.sub.d.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/ ekk kke 10 Phosphonoacetate 573818
T.sub.eA.sub.kA.sub.kA.sub.dT.sub.dT.sub.dG.sub.dT.sub.d.sup.mC.sub-
.dA.sub.dT.sub.dy.sup.mC.sub.dA.sub.k.sup.mC.sub.k.sup.mC.sub.e
3-9-3 Deoxy/ ekk kke 10 Phosphonoacetate e = 2'-MOE, k = cEt
TABLE-US-00124 TABLE 126 Comparison of selectivity in inhition of
HTT mRNA levels of antisense oligonucleotides with ISIS 460209
targeted to rs7685686 in GM4022 cells ISIS Mut IC.sub.50
Selectivity Wing Chemistry SEQ NO (.mu.M)) (wt vs mut) Motif Gap
Chemistry 5' 3' ID NO 460209 0.15 9.4 3-9-3 Full deoxy ekk kke 10
566276 0.76 12.8 3-9-3 Deoxy/Methyl phosphonate ekk kke 10 566277
0.20 17 3-9-3 Deoxy/Methyl phosphonate ekk kke 10 566278 0.25 8.9
3-9-3 Deoxy/Methyl phosphonate ekk kke 10 566279 0.38 -- 3-9-3
Deoxy/Methyl phosphonate ekk kke 10 566280 0.27 47 3-9-3
Deoxy/Methyl phosphonate ekk kke 10 566283 0.8 >100 3-9-3
Deoxy/Methyl phosphonate ekk kke 10 573815 0.16 18.8 3-9-3
Deoxy/Phosphonoacetate ekk kke 10 573816 0.55 18.1 3-9-3
Deoxy/Phosphonoacetate ekk kke 10 573817 0.17 22.5 3-9-3
Deoxy/Phosphonoacetate ekk kke 10 573818 0.24 13.5 3-9-3
Deoxy/Phosphonoacetate ekk kke 10 e = 2'-MOE, k = cEt
Example 83
Modified Oligonucleotides Comprising Methyl Phosphonate
Internucleoside Linkages Targeting PTEN and SRB-1--In Vivo
Study
[1025] Additional modified oligonucleotides were designed based on
ISIS 482050 and 449093 wherein the gap region contains ten
.beta.-D-2'-deoxyribonucleosides. The modified oligonucleotides
were designed by introducing two methyl phosphonate internucleoside
linkages at the 5'-end of the gap region with a 3/10/3 motif. The
oligonucleotides were evaluated for reduction in PTEN and SRB-1
mRNA expression levels in vivo. The parent gapmers, ISIS 482050 and
449093 were included in the study for comparison.
[1026] The modified oligonucleotides and their motifs are described
in Table 127. Each internucleoside linkage is a phosphorothioate
(P.dbd.S) except for the internucleoside linkage having a subscript
"x". Each nucleoside followed by a subscript "x" indicates a methyl
phosphonate internucleoside linkage (--P(CH.sub.3)(.dbd.O)--).
Nucleosides followed by a subscript "d" is a
.beta.-D-2'-deoxyribonucleoside. Nucleosides followed by a
subscript "k" indicates a 6'-(S)--CH.sub.3 bicyclic nucleoside
(e.g. cEt). ".sup.mC" indicates a 5-methyl cytosine modified
nucleoside.
Treatment
[1027] Six week old BALB/C mice (purchased from Charles River) were
injected subcutaneously twice a week for three weeks at dosage 10
mg/kg or 20 mg/kg with the modified oligonucleotides shown below or
with saline control. Each treatment group consisted of 3 animals.
The mice were sacrificed 48 hrs following last administration, and
organs and plasma were harvested for further analysis.
mRNA Analysis
[1028] Liver tissues were homogenized and mRNA levels were
quantitated using real-time PCR and normalized to RIBOGREEN as
described herein. The results in Table 128 are listed as PTEN or
SRB-1 mRNA expression for each treatment group relative to
saline-treated control (% UTC). As illustrated, reduction in PTEN
or SRB-1 mRNA expression levels was achieved with the
oligonucleotides comprising two methyl phosphonate internucleoside
linkages at the 5'-end of the gap region, ISIS 582073 and
582074.
Plasma Chemistry Markers
[1029] Plasma chemistry markers such as liver transaminase levels,
alanine aminotranferase (ALT) in serum were measured relative to
saline injected mice and the results are presented in Table 128.
Treatment with the oligonucleotides resulted in reduction in ALT
level compared to treatment with the parent gapmer, ISIS 482050 or
449093. The results suggest that introduction of methyl phosphonate
internucleoside linkage(s) can be useful for reduction of
hepatoxicity profile of otherwise unmodified parent gapmers.
Body and Organ Weights
[1030] Body weights, as well as liver, kidney and spleen weights
were measured at the end of the study. The results below are
presented as the average percent of body and organ weights for each
treatment group relative to saline-treated control. As illustrated
in Table 129, treatment with ISIS 582073 resulted in a reduction in
liver and spleen weights compared to treatment with the parent
gapmer, ISIS 482050. The remaining oligonucleotide, ISIS 582074 did
not cause any changes in body and organ weights outside the
expected range as compared to ISIS 449093.
TABLE-US-00125 TABLE 127 Modified oligonucleotides comprising
methyl phosphonate internu- cleoside linkages Wing SEQ ISIS Gap
Chemistry ID NO Sequence (5' to 3') Motif Chemistry 5' 3' NO.
482050
A.sub.kT.sub.k.sup.mC.sub.kA.sub.dT.sub.dG.sub.dG.sub.d.sup.mC.sub.-
dT.sub.dG.sub.d.sup.mC.sub.dA.sub.dG.sub.d.sup.mC.sub.kT.sub.kT.sub.k
3-10-3 Full deoxy kkk kkk 85 582073
A.sub.kT.sub.k.sup.mC.sub.kA.sub.dxT.sub.dxG.sub.dG.sub.d.sup.mC.su-
b.dT.sub.dG.sub.d.sup.mC.sub.dA.sub.dG.sub.d.sup.mC.sub.kT.sub.kT.sub.k
3-10-3 Deoxy/Methyl kkk kkk 85 phosphonate 449093
T.sub.kT.sub.k.sup.mC.sub.kA.sub.dG.sub.dT.sub.d.sup.mC.sub.dA.sub.-
dT.sub.dG.sub.dA.sub.d.sup.mC.sub.dT.sub.dT.sub.k.sup.mC.sub.k.sup.mC.sub.-
k 3-10-3 Full deoxy kkk kkk 86 582074
T.sub.kT.sub.k.sup.mC.sub.kA.sub.dxG.sub.dxT.sub.d.sup.mC.sub.dA.su-
b.dT.sub.dG.sub.dA.sub.d.sup.mC.sub.dT.sub.dT.sub.k.sup.mC.sub.k.sup.mC.su-
b.k 3-10-3 Deoxy/Methyl kkk kkk 86 phosphonate k = cEt
TABLE-US-00126 TABLE 128 Effect of modified oligonucleotide
treatment on target reduction and liver function in BALB/C mice
ISIS Dosage % ALT Gap Wing Chemistry SEQ NO. Target (mg/kg/wk) UTC
(IU/L) Motif Chemistry 5' 3' ID NO. Saline -- 0 100 30 -- -- -- --
-- 482050 PTEN 10 50 228 3-10-3 Full deoxy kkk kkk 85 482050 20
36.1 505 582073 10 72.2 47.7 Deoxy/Methyl kkk kkk 85 582073 20 57.4
46 phosphonate 449093 SRB-1 10 48 543 3-10-3 Full deoxy kkk kkk 86
449093 20 18.5 1090 582074 10 51.3 58.3 Deoxy/Methyl kkk kkk 86
582074 20 30.3 126.3 phosphonate k = cEt
TABLE-US-00127 TABLE 129 Effect of modified oligonucleotide
treatment on body and organ weights in BALB/C mice ISIS Dosage Body
wt rel to Liver/Body Spleen/Body Kidney/Body SEQ NO. Target
(mg/kg/wk) predose (%) Wt (%) Wt (%) Wt (%) ID NO. Saline -- 0
108.4 100 100 100 482050 PTEN 10 107.4 154.9 141.8 115.7 85 482050
20 111.3 176.7 142.3 112.5 582073 10 108.9 122.9 111.7 100.0 85
582073 20 107.9 133.8 114.6 102.9 449093 SRB-1 10 101.3 105.9 117.9
89.3 86 449093 20 95.3 118.6 129.6 93.0 582074 10 107.1 92.2 116.4
89.2 86 582074 20 103.8 95.5 128.8 91.9
Example 84
Modified Oligonucleotides Comprising Methyl Phosphonate
Internucleoside Linkages Targeting Target-Y--In Vivo Study
[1031] Additional modified oligonucleotides were designed in the
same manner as the antisense oligonucleotides described in Example
24, wherein two methyl phosphonate internucleoside linkages are
introduced at the 5'-end of the gap region. The modified
oligonucleotides were designed based on ISIS 464917, 465178, 465984
and 466456 with a 3/10/3 motif. The oligonucleotides were evaluated
for reduction in Target-Y mRNA expression levels in vivo. The
parent gapmers, ISIS 464917, 465178, 465984 and 466456 were
included in the study for comparison.
[1032] The modified oligonucleotides and their motifs are presented
in Table 130. Each internucleoside linkage is a phosphorothioate
(P.dbd.S) except for the internucleoside linkage having a subscript
"x". Each nucleoside followed by a subscript "x" indicates a methyl
phosphonate internucleoside linkage (--P(CH.sub.3)(.dbd.O)--). Each
nucleoside followed by a subscript "d" is a
.beta.-D-2'-deoxyribonucleoside. Nucleosides followed by a
subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside. Nucleosides followed by a subscript "k" indicates a
6'-(S)--CH.sub.3 bicyclic nucleoside (e.g. cEt). "N" indicates
modified or naturally occurring nucleobases (A, T, C, G, U, or
5-methyl C).
Treatment
[1033] Six week old BALB/C mice (purchased from Charles River) were
injected subcutaneously twice a week for three weeks at dosage 10
mg/kg or 20 mg/kg with the modified oligonucleotides shown below or
with saline control. Each treatment group consisted of 3 animals.
The mice were sacrificed 48 hrs following last administration, and
organs and plasma were harvested for further analysis.
mRNA Analysis
[1034] Liver tissues were homogenized and mRNA levels were
quantitated using real-time PCR and normalized to RIBOGREEN as
described herein. The results below are listed as Target-Y mRNA
expression for each treatment group relative to saline-treated
control (% UTC). As illustrated in Table 131, reduction in Target-Y
mRNA expression levels was achieved with the oligonucleotides
comprising two methyl phosphonate internucleoside linkages at the
5'-end of the gap region, ISIS 582071, 582072, 582069 and
582070.
Plasma Chemistry Markers
[1035] Plasma chemistry markers such as liver transaminase levels,
alanine aminotranferase (ALT) in serum were measured relative to
saline treated mice and the results are presented in Table 131.
Treatment with the oligonucleotides resulted in reduction in ALT
level compared to treatment with the parent gapmer, ISIS 464917,
465178, 465984 or 466456. The results suggest that introduction of
methyl phosphonate internucleoside linkage(s) can be useful for
reduction of hepatoxicity profile of otherwise unmodified parent
gapmers.
Body and Organ Weights
[1036] Body weights, as well as liver, kidney and spleen weights
were measured at the end of the study. The results in Table 132 are
presented as the average percent of body and organ weights for each
treatment group relative to saline-treated control. As illustrated,
treatment with ISIS 582070 resulted in a reduction in liver and
spleen weights compared to treatment with the parent gapmer, ISIS
466456. An increase in body and organ weights was observed for ISIS
582071 as compared to ISIS 464917. The remaining oligonucleotides,
ISIS 582072 and 582069 did not cause any changes in body and organ
weights outside the expected range as compared to ISIS 465178 and
465984.
TABLE-US-00128 TABLE 130 Modified oligonucleotides comprising
methyl phosphonate internu- cleoside linkages Wing SEQ ISIS Gap
Chemistry ID NO Sequence (5' to 3') Motif Chemistry 5' 3' NO.
464917
N.sub.kN.sub.kN.sub.kN.sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.su-
b.dN.sub.dN.sub.dN.sub.dN.sub.kN.sub.kN.sub.k 3-10-3 Full deoxy kkk
kkk 6 582071
N.sub.kN.sub.kN.sub.kN.sub.dxN.sub.dxN.sub.dN.sub.dN.sub.dN.sub.dN.-
sub.dN.sub.dN.sub.dN.sub.dN.sub.kN.sub.kN.sub.k 3-10-3 Deoxy/Methyl
kkk kkk phosphonate 465178
N.sub.kN.sub.kN.sub.kN.sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.su-
b.dN.sub.dN.sub.dN.sub.dN.sub.kN.sub.kN.sub.k 3-10-3 Full deoxy kkk
kkk 6 582072
N.sub.kN.sub.kN.sub.kN.sub.dxN.sub.dxN.sub.dN.sub.dN.sub.dN.sub.dN.-
sub.dN.sub.dN.sub.dN.sub.dN.sub.kN.sub.kN.sub.k 3-10-3 Deoxy/Methyl
kkk kkk phosphonate 465984
N.sub.kN.sub.kN.sub.kN.sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.su-
b.dN.sub.dN.sub.dN.sub.dN.sub.eN.sub.eN.sub.e 3-10-3 Full deoxy kkk
eee 6 582069
N.sub.kN.sub.kN.sub.kN.sub.dxN.sub.dxN.sub.dN.sub.dN.sub.dN.sub.dN.-
sub.dN.sub.dN.sub.dN.sub.dN.sub.kN.sub.kN.sub.k 3-10-3 Deoxy/Methyl
kkk kkk phosphonate 466456
N.sub.kN.sub.dN.sub.kN.sub.dN.sub.kN.sub.dN.sub.dN.sub.dN.sub.dN.su-
b.dN.sub.dN.sub.dN.sub.dN.sub.dN.sub.eN.sub.e 5-9-2 or Full deoxy
or kdkdk ee 6 3-11-2 deoxy/cEt or kdk 582070
N.sub.kN.sub.dN.sub.kN.sub.dxN.sub.dxN.sub.dN.sub.dN.sub.dN.sub.dN.-
sub.dN.sub.dN.sub.dN.sub.dN.sub.dN.sub.eN.sub.e 3-11-2 Deoxy/Methyl
kdk ee phosphonate e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
TABLE-US-00129 TABLE 131 Effect of modified oligonucleotide
treatment on Target-Y reduction and liver function in BALB/C mice
ISIS Dosage % ALT Gap Wing Chemistry NO. (mg/kg/wk) UTC (IU/L)
Motif Chemistry 5' 3' Saline 0 100 30 -- -- -- -- 464917 10 29 1244
3-10-3 Full deoxy kkk kkk 464917 20 30.1 2335 582071 20 10.2 274
3-10-3 Deoxy/Methyl kkk kkk phosphonate 465178 10 4.9 1231 3-10-3
Full deoxy kkk kkk 465178 20 10.6 6731 582072 10 36.7 44.7 3-10-3
Deoxy/Methyl kkk kkk 582072 20 23.6 43.7 phosphonate 465984 10 4.7
61 3-10-3 Full deoxy kkk eee 465984 20 0.9 57 582069 10 11.1 39.7
3-10-3 Deoxy/Methyl kkk kkk 582069 20 3.3 27.7 phosphonate 466456
10 9.5 692 5-9-2 or Full deoxy or kdkdk ee 466456 20 10.5 2209
3-11-2 deoxy/cEt or kdk 582070 10 73.9 24 3-11-2 Deoxy/Methyl kdk
ee 582070 20 51.3 36.7 phosphonate e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
TABLE-US-00130 TABLE 132 Effect of modified oligonucleotide
treatment on body and organ weights in BALB/C mice Body Liver/
Spleen/ Kidney/ Dosage wt rel to Body Body Body ISIS NO. (mg/kg/wk)
predose (%) Wt (%) Wt (%) Wt (%) Saline 0 108 100 100 100 464917 10
92.9 125 106.2 102.3 464917 20 71.1 110.9 67.2 107.3 582071 20
104.6 135.2 142.8 89.8 465178 10 94.9 131.3 108.1 85.3 465178 20
79.5 147.5 112 95.3 582072 10 109.2 117.3 111.7 104.8 582072 20
107.1 130.1 107.2 99.8 465984 10 111.4 117.6 110.1 98.8 465984 20
111.3 122.6 134.5 96.1 582069 10 107.8 106.2 97 100.6 582069 20
105.4 115.8 106.2 100.4 466456 10 109.7 148.6 198.7 105.9 466456 20
101.2 182.3 213.7 101.9 582070 10 111.2 100.3 116.7 100.8 582070 20
111.1 108.9 115.6 95.7
Example 85
Short-Gap Chimeric Oligonucleotides Targeting Target-Y
[1037] A series of chimeric antisense oligonucleotides was designed
based on ISIS 464917 or 465178, wherein the central gap region
contains ten 2'-deoxyribonucleosides. These gapmers were designed
by introducing 2'-MOE modified nucleoside(s) at the wing(s) and/or
shortening the central gap region to nine, eight, or seven
2'-deoxyribonucleosides.
[1038] The gapmers and their motifs are described in Table 133. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
TABLE-US-00131 TABLE 133 Short-gap antisense oligonucleotides
targeting Target-Y SEQ ISIS ID NO Sequence (5' to 3') Motif NO.
464917 N.sub.kN.sub.kN.sub.kNNNNNNNNNNN.sub.kN.sub.kN.sub.k 3-10-3
6 (kkk-d10-kkk) 465977
N.sub.kN.sub.kN.sub.kNNNNNNNNNNN.sub.eN.sub.eN.sub.e 3-10-3 6
(kkk-d10-eee) 573331
N.sub.eN.sub.kN.sub.kNNNNNNNNNNN.sub.kN.sub.kN.sub.e 3-10-3 6
(ekk-d10-kke) 573332
N.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNNNN.sub.kN.sub.kN.sub.e 4-9-3 6
(eekk-d9-kke) 573333
N.sub.eN.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.kN.sub.e
5-8-3 6 (eeekk-d8-kke) 573334
N.sub.eN.sub.eN.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.su-
b.e 6-7-3 6 (eeeekk-d7-kke) 573335
N.sub.eN.sub.kN.sub.kNNNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.e 3-9-4 6
(ekk-d9-kkee) 573336
N.sub.eN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.eN.sub.e
3-8-5 6 (ekk-d8-kkeee) 573361
N.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.eN.sub.eN.su-
b.e 3-7-6 6 (ekk-d7-kkeeee) 573338
N.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.e
4-8-4 6 (eekk-d8-kkee) 573339
N.sub.eN.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.sub.eN.su-
b.e 5-7-4 6 (eeekk-d7-kkee) 573340
N.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.eN.su-
b.e 4-7-5 6 (eekk-d7-kkeee) 573779
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573780
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573806
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573782
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573783
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573784
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573785
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573786
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573787
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 465178
N.sub.kN.sub.kN.sub.kNNNNNNNNNNN.sub.kN.sub.kN.sub.k 3-10-3 6
(kkk-d10-kkk) 466140
N.sub.kN.sub.kN.sub.kNNNNNNNNNNN.sub.eN.sub.eN.sub.e 3-10-3 6
(kkk-d10-eee) 573341
N.sub.eN.sub.kN.sub.kNNNNNNNNNNN.sub.kN.sub.kN.sub.e 3-10-3 6
(ekk-d10-kke) 573342
N.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNNNN.sub.kN.sub.kN.sub.e 4-9-3 6
(eekk-d9-kke) 573343
N.sub.eN.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.kN.sub.e
5-8-3 6 (eeekk-d8-kke) 573344
N.sub.eN.sub.eN.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.su-
b.e 6-7-3 6 (eeeekk-d7-kke) 573345
N.sub.eN.sub.kN.sub.kNNNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.e 3-9-4 6
(ekk-d9-kkee) 573346
N.sub.eN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.eN.sub.e
3-8-5 6 (ekk-d8-kkeee) 573347
N.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.eN.sub.eN.su-
b.e 3-7-6 6 (ekk-d7-kkeeee) 573348
N.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.e
4-8-4 6 (eekk-d8-kkee) 573349
N.sub.eN.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.sub.eN.su-
b.e 5-7-4 6 (eeekk-d7-kkee) 573350
N.sub.eN.sub.eN.sub.kN.sub.kNNNNNNNN.sub.kN.sub.kN.sub.eN.sub.eN.su-
b.e 4-7-5 6 (eekk-d7-kkeee) 573788
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573789
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573790
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573791
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573792
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573793
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573794
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573795
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 573796
N.sub.kN.sub.kN.sub.kNNNNNNNNN.sub.kN.sub.eN.sub.eN.sub.eN.sub.e
3-8-5 6 (kkk-d8-keeee) 141923
C.sub.eC.sub.eT.sub.eT.sub.eC.sub.eCCTGAAGGTTC.sub.eC.sub.eT.sub.eC-
.sub.eC.sub.e 5-10-5 9 (neg control) (e5-d10-e5) e = 2'-MOE (e.g.
e5 = eeeee), k = cEt, d = 2'-deoxyribonucleoside
Example 86
Short-Gap Chimeric Oligonucleotides Targeting Target-Y--In Vitro
Study
[1039] Several short-gap chimeric oligonucleotides from Table 133
were selected and evaluated for their effects on Target-Y mRNA in
vitro. The parent gapmer, ISIS 464917 and 465178 were included in
the study for comparison. ISIS 141923 was used as a negative
control.
[1040] The newly designed gapmers were tested in vitro. Primary
mouse hepatocytes at a density of 35,000 cells per well were
transfected using electroporation with 0.0625, 0.25, 1, 4 and 16
.mu.M concentrations of chimeric oligonucleotides. After a
treatment period of approximately 24 hours, RNA was isolated from
the cells and Target-Y mRNA levels were measured by quantitative
real-time PCR. Primer probe set RTSXXXX was used to measure mRNA
levels. Target-Y mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN.
[1041] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide is presented in Table 134 and was calculated
by plotting the concentrations of oligonucleotides used versus the
percent inhibition of Target-Y mRNA expression achieved at each
concentration, and noting the concentration of oligonucleotide at
which 50% inhibition of Target-Y mRNA expression was achieved
compared to the control. As illustrated in Table 134 and 135,
several short-gap oligonucleotides showed comparable inhibition of
Target-Y mRNA levels as compared to the parent gapmers, ISIS 464917
or 465178.
TABLE-US-00132 TABLE 134 Comparison of inhibition of Target-Y mRNA
levels of short-gap oligonucleotides with ISIS 464917 IC.sub.50 SEQ
ID ISIS NO Motif (.mu.M) NO. 464917 3-10-3 0.5 6 (kkk-d10-kkk)
573331 3-10-3 0.5 6 (ekk-d10-kke) 573332 4-9-3 0.6 6 (eekk-d9-kke)
573333 5-8-3 0.5 6 (eeekk-d8-kke) 573335 3-9-4 0.4 6 (ekk-d9-kkee)
573336 3-8-5 0.5 6 (ekk-d8-kkeee) 573361 3-7-6 0.6 6
(ekk-d7-kkeeee) 573340 4-7-5 2.3 6 (eekk-d7-kkeee) 141923 5-10-5
>16 9 (neg control) (e5-d10-e5) e = 2'-MOE (e.g. e5 = eeeee), k
= cEt, d = 2'-deoxyribonucleoside
TABLE-US-00133 TABLE 135 Comparison of inhibition of Target-Y mRNA
levels of short-gap oligonucleotides with ISIS 465178 IC.sub.50 SEQ
ISIS NO Motif (.mu.M) ID NO. 465178 3-10-3 0.2 6 (kkk-d10-kkk)
573341 3-10-3 0.2 6 (ekk-d10-kke) 573342 4-9-3 0.4 6 (eekk-d9-kke)
573345 3-9-4 0.2 6 (ekk-d9-kkee) 573346 3-8-5 0.4 6 573348
(ekk-d8-kkeee) 0.5 6 573350 4-8-4 0.9 6 (eekk-d8-kkee) 573806 4-7-5
0.8 6 (eekk-d7-kkeee) 573783 3-8-5 1.0 6 (kkk-d8-keeee) 573784
3-8-5 1.3 6 (kkk-d8-keeee) 573785 3-8-5 1.0 6 (kkk-8-keeee) 573792
3-8-5 0.5 6 (kkk-8-keeee) 573794 3-8-5 0.4 6 (kkk-d8-keeee) 573795
3-8-5 0.5 6 (kkk-d8-keeee) 573796 3-8-5 0.8 6 (kkk-d8-keeee) 141923
5-10-5 >16 6 (neg control) (e5-d10-e5) e = 2'-MOE (e.g. e5 =
eeeee), k = cEt, d = 2'-deoxyribonucleoside
Example 87
Short-Gap Chimeric Oligonucleotides Targeting Target-Y--In Vivo
Study
[1042] Several short-gap oligonucleotides described in Example 85
were selected and evaluated for efficacy in vivo and for changes in
the levels of various plasma chemistry markers targeting Target-Y.
The parent gapmer, ISIS 464917 was included in the study for
comparison.
Treatment
[1043] Six week male BALB/C mice (purchased from Charles River)
were injected subcutaneously with a single dose of antisense
oligonucleotide at 10 mg/kg or 20 mg/kg or with saline control.
Each treatment group consisted of 4 animals. The mice were
sacrificed 96 hrs following last administration, and organs and
plasma were harvested for further analysis.
mRNA Analysis
[1044] Liver tissues were homogenized and mRNA levels were
quantitated using real-time PCR and normalized to Cyclophilin A as
described herein. The results below are listed as Target-Y mRNA
expression for each treatment group relative to saline-injected
control (% UTC). As illustrated in Table 136, Target-Y mRNA
expression levels were reduced in a dose-dependent manner with the
newly designed oligonucleotides.
Plasma Chemistry Markers
[1045] Plasma chemistry markers such as liver transaminase levels,
alanine aminotranferase (ALT) in serum were measured relative to
saline treated mice and the results are presented in Table 136.
Treatment with the newly designed oligonucleotides resulted in
reduction in ALT levels compared to treatment with the parent
gapmer, ISIS 464917. The results suggest that shortening the
central gap region and introducing 2'-MOE modified nucleoside(s) at
the wing(s) can be useful for the reduction of hepatoxicity profile
of ISIS 464917.
Body and Organ Weights
[1046] Body weights, as well as liver, kidney and spleen weights
were also measured at the end of the study. The results showed that
treatment with the newly designed oligonucleotides did not cause
any changes in body and organ weights outside the expected range as
compared to ISIS 464917 (data not shown).
TABLE-US-00134 TABLE 136 Effect of short-gap antisense
oligonucleotide treatment on Target-Y reduction and liver function
in BALB/C mice Dosage % ALT SEQ ISIS NO (mg/kg/wk) UTC (IU/L) Motif
ID NO. Saline 0 99 23 -- 464917 10 11.5 1834 3-10-3 6 20 5.1 8670
(kkk-d10-kkk) 573333 10 32.8 79 5-8-3 6 20 21.2 370 (eeekk-d8-kke)
573334 10 79.5 26 6-7-3 6 20 69.4 29 (eeeekk-d7-kke) 573336 10 23.2
179 3-8-5 6 20 12.0 322 (ekk-d8-kkeee) 573339 10 47.9 35 5-7-4 6 20
32.8 199 (eeekk-d7-kkee) 573340 10 81.3 63 4-7-5 6 20 66.2 33
(eekk-d7-kkeee) 573361 10 33.6 150 3-7-6 6 20 19.2 722
(ekk-d7-kkeeee) 573783 10 16.5 734 3-8-5 6 20 6.3 1774
(kkk-d8-keeee) 573785 10 20.2 61 3-8-5 6 20 14.2 40 (kkk-d8-keeee)
573806 10 19.3 346 3-8-5 6 20 15.4 1389 (kkk-d8-keeee) e = 2'-MOE,
k = cEt, d = 2'-deoxyribonucleoside
Example 88
Short-Gap Chimeric Oligonucleotides Targeting PTEN
[1047] A series of chimeric antisense oligonucleotides was designed
based on ISIS 482050, wherein the central gap region contains ten
2'-deoxyribonucleosides. These gapmers were designed by introducing
2'-MOE modified nucleoside(s) at the wing(s) and/or shortening the
central gap region to nine, or eight 2'-deoxyribonucleosides.
[1048] The gapmers and their motifs are described in Table 137. The
internucleoside linkages throughout each gapmer are
phosphorothioate (P.dbd.S) linkages. All cytosine nucleobases
throughout each gapmer are 5-methyl cytosines. Nucleosides without
a subscript are .beta.-D-2'-deoxyribonucleosides. Nucleosides
followed by a subscript "e" or "k" are sugar modified nucleosides.
A subscript "e" indicates a 2'-O-methoxyethyl (MOE) modified
nucleoside and a subscript "k" indicates a 6'-(S)--CH.sub.3
bicyclic nucleoside (e.g. cEt).
TABLE-US-00135 TABLE 137 Short-gap antisense oligonucleotides
targeting PTEN SEQ ISIS ID NO. Sequence (5' to 3') Motif NO. 482050
A.sub.kT.sub.kC.sub.kATGGCTGCAGC.sub.kT.sub.kT.sub.k 3-10-3 85
(kkk-d10-kkk) 508033
A.sub.kT.sub.kC.sub.kATGGCTGCAGC.sub.eT.sub.eT.sub.e 3-10-3 85
(kkk-d10-eee) 573351
A.sub.eT.sub.kC.sub.kATGGCTGCAGC.sub.kT.sub.kT.sub.e 3-10-3 85
(ekk-d10-kke) 573352
A.sub.eT.sub.eC.sub.kA.sub.kTGGCTGCAGC.sub.kT.sub.kT.sub.e 4-9-3 85
(eekk-d9-kke) 573353
A.sub.eT.sub.eC.sub.eA.sub.kT.sub.kGGCTGCAGC.sub.kT.sub.kT.sub.e
5-8-3 85 (eeekk-d8-kke) 573354
A.sub.eT.sub.eC.sub.eA.sub.eT.sub.kG.sub.kGCTGCAGC.sub.kT.sub.kT.su-
b.e 6-7-3 85 (eeeekk-d7-kke) 573355
A.sub.eT.sub.kC.sub.kATGGCTGCAG.sub.kC.sub.kT.sub.eT.sub.e 3-9-4 85
(ekk-d9-kkee) 573356
A.sub.eT.sub.kC.sub.kATGGCTGCA.sub.kG.sub.kC.sub.eT.sub.eT.sub.e
3-8-5 85 (ekk-d8-kkeee) 573357
A.sub.kT.sub.kC.sub.kATGGCTGC.sub.kA.sub.kG.sub.eC.sub.eT.sub.eT.su-
b.e 3-7-6 85 (ekk-d7-kkeeee) 573358
A.sub.eT.sub.eC.sub.kA.sub.kTGGCTGCAG.sub.kC.sub.kT.sub.eT.sub.e
4-8-4 85 (eekk-d8-kkee) 573359
A.sub.eT.sub.eC.sub.eA.sub.kT.sub.kGGCTGCAG.sub.kC.sub.kT.sub.eT.su-
b.e 5-7-4 85 (eeekk-d7-kkee) 573360
A.sub.eT.sub.eC.sub.kA.sub.kTGGCTGCA.sub.kG.sub.kC.sub.eT.sub.eT.su-
b.e 4-7-5 85 (eekk-d7-kkeee) 573797
T.sub.kG.sub.kG.sub.kCTGCAGCTT.sub.kC.sub.eC.sub.eG.sub.eA.sub.e
3-8-5 87 (kkk-d8-keeee) 573798
A.sub.kT.sub.kG.sub.kGCTGCAGCT.sub.kT.sub.eC.sub.eC.sub.eG.sub.e
3-8-5 88 (kkk-d8-keeee) 573799
C.sub.kA.sub.kT.sub.kGGCTGCAGC.sub.kT.sub.eT.sub.eC.sub.eC.sub.e
3-8-5 89 (kkk-d8-keeee) 573800
T.sub.kC.sub.kA.sub.kTGGCTGCAG.sub.kC.sub.eT.sub.eT.sub.eC.sub.e
3-8-5 90 (kkk-d8-keeee) 573801
A.sub.kT.sub.kC.sub.kATGGCTGCA.sub.kG.sub.eC.sub.eT.sub.eT.sub.e
3-8-5 85 (kkk-d8-keeee) 573802
C.sub.kA.sub.kT.sub.kCATGGCTGC.sub.kA.sub.eG.sub.eC.sub.eT.sub.e
3-8-5 91 (kkk-d8-keeee) 573803
C.sub.kC.sub.kA.sub.kTCATGGCTG.sub.kC.sub.eA.sub.eG.sub.eC.sub.e
3-8-5 92 (kkk-d8-keeee) 573804
T.sub.kC.sub.kC.sub.kATCATGGCT.sub.kG.sub.eC.sub.eA.sub.eG.sub.e
3-8-5 93 (kkk-d8-keeee) 573805
T.sub.kT.sub.kC.sub.kCATCATGGC.sub.kT.sub.eG.sub.eC.sub.eA.sub.e
3-8-5 94 (kkk-d8-keeee) e = 2'-MOE, k = cEt, d =
2'-deoxyribonucleoside
Example 89
Short-Gap Chimeric Oligonucleotides Targeting PTEN--In Vitro
Study
[1049] Several short-gap chimeric oligonucleotides from Table 137
were selected and evaluated for their effects on PTEN mRNA in
vitro. The parent gapmer, ISIS 482050 were included in the study
for comparison. ISIS 141923 was used as a negative control.
[1050] The newly designed gapmers were tested in vitro. Primary
mouse hepatocytes at a density of 35,000 cells per well were
transfected using electroporation with 0.0625, 0.25, 1, 4 and 16
.mu.M concentrations of chimeric oligonucleotides. After a
treatment period of approximately 24 hours, RNA was isolated from
the cells and PTEN mRNA levels were measured by quantitative
real-time PCR. Primer probe set RTS186 was used to measure mRNA
levels. PTEN mRNA levels were adjusted according to total RNA
content, as measured by RIBOGREEN.
[1051] The half maximal inhibitory concentration (IC.sub.50) of
each oligonucleotide was calculated in the same manner as described
previously and the results are presented in Table 138. As
illustrated, most short-gap oligonucleotides showed comparable
inhibition of PTEN mRNA levels as compared to ISIS 482050.
TABLE-US-00136 TABLE 138 Comparison of inhibition of PTEN mRNA
levels of short-gap oligonucleotides with ISIS 482050 IC.sub.50 SEQ
ISIS NO Motif (.mu.M) ID NO. 482050 3-10-3 1.9 85 (kkk-d10-kkk)
573351 3-10-3 2.8 85 573353 (ekk-d10-kke) 6.1 85 573355 3-9-4 2.6
85 (ekk-d9-kkee) 573798 3-8-5 1.6 88 (kkk-d8-keeee) 573799 3-8-5
1.9 89 (kkk-d8-keeee) 573803 3-8-5 1.4 92 (kkk-d8-keeee) 141923
5-10-5 >16 9 (neg control) (e5-d10-e5) e = 2'-MOE (e.g. e5 =
eeeee), k = cEt, d = 2'-deoxyribonucleoside
Sequence CWU 1
1
941202001DNAHomo sapiens 1gcccagcagg tgtcagcctc attttacccc
gcccctattc aagatgaagt tgttctggtt 60ccaacgcctc tgacatatta gctgcatcat
tttacatttc tttttttttt ttccttttaa 120atggggtctt gctctgtcac
ccaggctgga gtgctgtggt atgatctcgg ctcactgcaa 180tctccacctc
cgaggttcca gcgattctct tgcctcagcc tcccgagtag ctgggactac
240aggcacccac catcatactg ggctaatttt tgtgttttta gtagagatgg
ggtttcccca 300tgttgcccag gctgatctca aactcctggg cttaagcaat
acagccgcgt tggcctccca 360aagtgttggg attacaagca tgagctaccc
cacccagctc attttacatt tccacttgtt 420aaactgaaaa ctggcccgag
aaagcttctg tactgccatc cttgcgtcct tgcagatgaa 480tcgtaaccta
gcatagtagg taggcagact gaaaacctaa cttagcagta ggcttctgta
540acaacagctg tgtctcagcc agttcctgca gccagacttc aaccactcac
aggccgcaaa 600ctgttcaaac tgtgttcgga gaaggcgaat tcatctggct
gttaacgtgc ctcacttctg 660ctttctgtgg ccactttccc ttttctgtcc
ataaatttgc tttgaccaca cagcatccct 720agagtctccc tgaatctgct
gtgattctgg gacctgcacc atttgtgaat tgtttttttt 780ttccttgatc
agctaaactc tgttcaattc aatttgttgg aagtttttaa cataccaatg
840gtgcaccaag gttccaattt ctccacttcc tcataaataa gtcattttaa
atggcttttc 900agtattccaa tatttggaag tattaatgtt tctaccaatt
ttctattttt ggacattgag 960gttgtttcat tttttttttc tttttttgag
acagagtctc gctccgtcac ccaggctgga 1020gtgcagtggc ctgatcccgg
cccactgcaa cctccacctc cctcctcagc ctcctgagta 1080gctgggatta
caggtgcatg caccaccaca cccagctaat ttttgtattt ttagtagaga
1140tggggtttca ccatgttggt caggctggtc tcaaactcct gacctcaggt
ggtccacctg 1200ccttggcctc ccaaaatgct gggattacag gcctgagcca
ctgcgcctgg cctcatcttc 1260ttgatattaa tgttgcttta acatctttgt
ccctgtgttt tttgtttttt tttttgagac 1320ggagtctcat tcattctgtc
acccaggctg gagttcagtg gcgtgatctc agctcactgc 1380aacctctgtc
tcctgggttc cagtgattct cctgcgtcgg tctcctgagt agctgtgttc
1440ctgggtcttt cgatggttat ttaatacttc cctacagtaa tgccctgtgc
gtacatgcta 1500agtgtgatga aatggttggc acagttaaat cttttgaaag
acattgccaa gtcactcttc 1560agaaaagtga taggaggtca tagcaatttt
aagaagtcct catttctaca tttccttact 1620aatctcggtt ggtgtctctt
caatctttcc tcacactttt cttgggtttt tcctgaatca 1680tgagtctact
acatttacac attttaaagc atctttagaa acaggatctc attttgttgc
1740ccaggctaga gtttggtggc atgattatag ctcctcatac tcctgggctc
aagtgatcct 1800tccacctctg aaaccccaaa atttgagaaa ggtctcattt
aatttagaaa gtttattttg 1860ccaaggttga gggtgcacac ctgtgatgat
atacgagtta aaaagaaatt atttaggcag 1920atactgaggg taagaaagtc
ctcggtaagg ttttcttttc aatgaaaagc agcccccaag 1980cattttcttt
tctaacaaag agcagcctgt aaaatcgagc tgcagacata cacaagcaag
2040ctggaagctt gcacaggtga atgctggcag ctgtgccaat aagaaaaggc
tacctggggc 2100caggcagatc caacatggcg gctccatctt ccctttcctt
gtcaaccatg tgcacagtaa 2160ggagcaggca acatagtgtc ccccgagtag
agaccaattt gcataataaa aggtgagggt 2220agggtgggca gcttctttgc
atgctatgta aacattatgc ctggtccaac caatctttgg 2280gccctgtgta
aattagacac cacctcctca agcctgtcta taaaaccctg tccattctgc
2340cgcaggctgg aagacccact ggggcacccc tctctctcta taggagacag
ctattcattt 2400ttctctttct ttcacctatt aaagctccac tcttaacccc
actccgtgtg tatctatgtt 2460cttgatttcc ttggcatgag gcaatgaacc
ttgggtatta ccccagaacc ttgggtatta 2520tgccacttca gtgacacagc
ctcaggaaat cctgatgaca tgttcccaag atggtcgggg 2580cacagcttgg
ttttatacat tttagggaga catgagacgt caattcatat atgtaagaag
2640tacattggtt ccgtccagaa aggcggggac aacttgaggc agggagagag
cttctaggtc 2700acaggtagac aaatggttgc attcttttga atctccgata
agcctttcca aaggaggcaa 2760tcagaatatg cgtctattga ctgggcgcag
tggctcatgc ctgtaatgcc agcactttgg 2820gaggcggagg tgggtggatc
acctgaggtc aggagtttga gagcagcccg gccaacatgg 2880tgaaaccctg
tctctactaa aaatacaaaa aattagctgg gcgtggtggc gggcgcctgt
2940aatcccagct actcgggagg ctgaggcagg agaatagctt gaacccagaa
ggaagaggtt 3000gcagtgagct gagatggtgc cattgcactc cagcctgggc
aacaagagtg aaactccatc 3060tcagaaaaaa aaaaaaaagg cctgggcaaa
gtggctcacg cctgtaatcc cagcactttg 3120ggaagccgag gcgggcaggt
cacaaagtca ggagattgag accatcctgg ctaacatgat 3180gaaaccccat
ctctactaaa aaatacaaaa aactagctgg gtgtggtggc gagcacctgt
3240agtcccagct actcggcagg ctgaggcagg agaatggcgt gaaccgggga
ggcggagctt 3300gcagtgagcc gagatcacac cactgcactc cagcccggac
gacagggcaa gactctatct 3360caaattaaaa aaaaaaaaaa aaaaaaaaaa
aaagagagag agaatatgca tctatctcag 3420tgagcagaag gatgactttg
aatggaatgg gagcagttcc tagcttgaac ttccccttta 3480gcttcagtga
tttgggggct caaggtatgt tcctttcaca tacctcagcc tcccaagtag
3540ctgggaccac aagtgcatgc caccacacgt ggctaatgtt ttattttttt
tgtaggaata 3600gggtctcact atgtgtccag gctggtctaa aacccctgag
ctcaaatggt cctcccgcct 3660cagcctcccg aaatgctggg attacaggca
tgagccagca tgcccggcct agtctacatt 3720tttataaatt gctaattcaa
agttccctct ccaaaacctc atggttttcc ctgttctcat 3780cccctgcacc
ctcccttccc ctggagtact cacctggcct tggaggtctg gtgtgagccc
3840ggacttcgat tctaggcaca gcatgtgatg agcgccccca ggtcaaacac
ctcccctctg 3900cggcctgtgc ttcaccgcct tgacagtgag aaaggtctcc
cttcggctca ttctcgaagt 3960ctcaaacttc acttctcctg tgcgctgatt
ctgaattcag cccccgtcca aggtcctggc 4020ccctttctct tctgcttggc
gtgttgttca tcaccactgt gcactgctga gggtaagtgc 4080ggttctctgg
acctctgctt tatcattaga acagactctt gcggtttccc acgacattcc
4140tttcacttct cacttggaag atgagccgtg aggaaatcct gtgttgtgtg
gtatgtgggc 4200tgtgcttctg cttgacttga gggccaagca gcattgcaag
ccatggtttt aaataagaaa 4260gaacatttct aaccttcatc ttctagtaag
gaaacaagtg ggctttagag ttcttgctca 4320ggaaagacct atgtcccagt
ccaaccggac cttttactaa agagatcttc ctgatcctcc 4380tccccaggcc
aggggagggg tcctccctgg ggttggagcc tttagtaggg ggtcggagac
4440acgacgtagc cttcatgaca ttcatagtct agttacacga tccctgtaag
ggtcagttga 4500agtaagtgct acaaaggaag ggaggtgctc agtggagagg
gctctctttt atgtattata 4560tttctttcat ggggagggat atggatcagg
gatcagcaga ggtgtttcag tcccgaggga 4620aagaaagtca gcgtggcttg
ggagttggga gcagcaagac agtggctcaa gatatcttaa 4680gactagtgga
gtacaccttg catgttaaaa gccttgctca gggctgcctg gttcttgtag
4740gacgacagag atggcctagc tctgcatact gcacccccag gggctcagaa
cagtgcaaat 4800gtcagtctat ctgtcagtgg cagagccagc cttggagcag
gggtgcaagg aggtctctgc 4860actggccagg catgcagaac attctgttca
gtagcactgg acagaaggcc ccatctagat 4920gagacagagc tggtggggca
ggacaaagac tcctggcagc tcaaacggcc tggcagatgc 4980ttggagagag
ggggcttctt gagacagcac catttctggg aagagagtca cctgggaggg
5040atgaggccac gctccggctt ggaggtgaag agaggggctg ctgcaagaaa
gaattagaga 5100catgccagcc tttgctgtgt tgcccaggct ggtcatgaac
tcttggcctc aagcaatctt 5160cccacctcag cctccccaag cgctgggatt
atagacatga gcccccatgc tggccaataa 5220aagatgattt tatggagggg
atggtggtga aggttgtggg tggtatgaaa tagtaagaaa 5280tatatattgg
tctgcaccca gttcctgcca cagagctcct aaaatcctga gaacttcctg
5340ggtgagcatc ttttgttcta atgaggtgac tcttggtggc tcctggatag
gagtgaatca 5400ccagaaagat caagccagag ttagaagcag aaagtgctgg
ctataacaca ggaaagctgt 5460aacacaaata ataaagtttt tttttttttt
tttgagatgg agcctcactc tgttgcccag 5520gctggagtgc aatggtgcaa
tctcagctca ctacaagctc tgcctcccag gttcaagtga 5580ttctcctgcc
tcagcctcct gagcagttgg gactacaggt gtgtgccacc acatctggct
5640aatttttgta tttttagcag agacggggtt tcaccatatt aaccaggctg
gcctcaaact 5700ccttaccttg tgatccgcct gcctcagcct cccaaagtgc
tgggattaca ggcatgagcc 5760accgtgcctg gccaaaagac attgttctta
aaagaatcaa ctaactaacc aaataaataa 5820aaatctaacc taattaagaa
actaaaaata cacaaaaatt aatttcaagg ggagaaaaat 5880catgtaaaga
gagaaagata atgaatactt tgcagaaatt tatgaacata aacataaaac
5940ttggatgaaa tgcatttcta ggaaaacata atttatcaaa actaaccaca
agtaaaatag 6000aagcctaaat aggatatttt caagagaaga agtaaagttg
tcaaagtgct acccttcaaa 6060aaaacaccag gctcaaacaa tctgacatgg
gaatgttagc acaccttaga gagcaaataa 6120aactttgaat gggcttgaaa
tattccagac tctagaaaaa caaaacttcc caattctttt 6180tataaagcaa
gtataaattg ataccaaaat cttataaaga ccttatacaa aacttcatac
6240caatctcttt tatgaataca aaacccttaa taaagtatta ccagacagaa
cccaacaata 6300cataaaaatg tcacatcata acatagtggg gtttatttca
ataatgcatg gatggttcaa 6360tacaaggaaa ttcagtaaca caatataata
gatcatgtga atatacccaa agaaaaaata 6420gattattttc atagatgctg
taaaggcatt tgaccaaatt caacacctac tttttaggtg 6480gtcaataaaa
taaattagtt actccttctt tagcatgata aaatatattt atcagcccag
6540aaggcatcat tttacccgat aagggcacac gctggaggga ataatgttaa
aattaggaat 6600aagaggatag ctagtttctt tcttcttttt tttttttgag
acggagtctt gctctgttgc 6660caggctggag tgcagtggtg caatgttggc
tcactgcacg ccccccgcct cccaggttca 6720agcgattctc ctgcctcagc
ctcccgagta gctgggacta caggcgcgca ccaccatgcc 6780cggctaattt
ttttttgtat tttagtagag atggggtttc accatgttgg tcaggctggt
6840cttgaactcc caacctcacg tactgggatt accggtgtga gccaccacgc
cagcccaact 6900actttcaaca ttatccttaa tactgatgct tattgactta
ctatggggtt acctctagat 6960aaatccataa taagttgaaa atataagtaa
aaaatgccct taatacacct aacctaccaa 7020acatcatagc tgagcccagc
ctgccttagc tatgctcaga cactgacgtc agcctacaat 7080tggcaaaatc
acacagcagc acagtctact gcagagcatc tgctgtttgc ccttgtgact
7140gcgtggctgc ctgggagctt cccagcttca caagacagta ttacgtagca
catcactagc 7200ctggggaaag atcaaagttg aaaatttgaa gtgtggtttc
cattgaatgt gtactgcttt 7260tgcaccatca tcaagtcaaa aaattttagt
tgaaccagcc taagtttggg accatcttta 7320ttttcaggag gaacttccat
gtacattgat gacggacgat agaatccgtt tctatcatcc 7380taatgaacat
aatgaataaa tccagacaaa cataaacatt aacagagtaa gcagctttcg
7440gggctggaag ccagaagagg gtgggagcgc agagagagag gccaaacacc
agggctgctt 7500ctgctttgcg ggtatttgct gatctggaca aggtatctgg
aaggctgagc taagcctcct 7560ttttttttga ggtggcgtct cactctgttg
ccaggctgga gtgcaatggt gcgatctcag 7620ctcactgcaa cctccacctc
cctggttcaa gcgattctcc tgcctcagcc tcccgagtag 7680ctgggattac
aggctcccgc cactacaccc agctgatttt tgtaatttta gtagagacgg
7740ggtttcacca tgttggccag gatggtctcg atctcttgac gtcatgatct
gtccacctcg 7800gcctcccaaa gtgctgggat tataggcgtg acccaccgtg
ccccgtctga gctaagcctc 7860ttgagcatag gggactaaaa atgaaatcta
gcgcatgcca agtttagggt cccaggcaat 7920tcctttccac tttggggtcc
actttggggt ccaccccacc caagaagaag gatgacttgg 7980aagtaaacca
gctctgaaat atggatggtc ctctgggacc ataccaatcc cttcatatca
8040accacatcca gttcctcaaa actggaactt ggattaagat ggcctaggac
ttctagtgtc 8100ccaggagcct ggcattgcaa acaaaaatcc tctccggaag
aagataatac cttaagcttc 8160aaatgactct ctaataaatt tcaaatacaa
tgtccagcac acaaacacaa attaccagga 8220acgtgatatg aggcctgatg
gatgggaatt agcagaaact tcaggcatga gaaacatacc 8280ctcagaggcc
tagaatctat ctagtgtcta gataatggag atatgaaata cagacactta
8340aacaactatg tttcccatgt tcaaagagga aatttgcaaa acttgaaagt
gttggcagga 8400aatcagaaac tataaaatgt gacaacagca tactttagag
tcagtataaa ttacggtccc 8460gaaaactgca gaattccaga acttaatggt
aaagcaaggg tttaacagca gaatagaaat 8520agccagagag aactaggaag
taagtcagat gacactaccc agaataaggc actgagaggc 8580caaggaatgg
aaaatgcaga agaaaggata tggtgagagg atctaatata catttatttg
8640gagtaccagg gagagagaga aggagaagaa cagaagccgt gtttcaagga
cggtgactga 8700gaggcttcga aactgatgaa agccatcagt tcacaaattc
aaagcccagt gaattccaag 8760gagaaaaaaa gaaatccata ctgtgaaagc
aagtccagac aatgacaaac accatcaaca 8820atacacagga caggcataag
atgcatttaa tggggacact cagaggcaga gggttatcag 8880aaggaggcac
ttctctccca agttctcatc atcccagggc cagggacagc tggtcacacc
8940ttagggagtt cactaggaga gggatctggc ttcttgtcat tctgggtatt
tgtagggaaa 9000ttggaaggga accgagagca cctagccaat cgcatagcaa
tgggagattt caggctgtgg 9060ggaatgtctt tgctggtgaa aagaacatcc
tgaccttaga aatctttcac cgagggggat 9120ctgcgttcca gaacttctgg
agctggtata ggtaaggctt tgagctttcc tactgagcca 9180gcctgttgct
aggttaccaa aggggacctc gagggccatc tggccaacaa gcagacttgt
9240ctctccttac acccccagac gtatcactgc aaaactacag aaaaccaaag
acagagaaaa 9300tcttaaaagc agccagattt aaaaaatggc atattagttt
caaagcagca gccatgaaat 9360tgacagctga tgtctcaaca gcaagaatga
aaagtggaag acaggccagg tgtggtggct 9420caggcctgta atcccagcac
tttgggaggc cgaggcgggt ggatcacgag gtcaggagac 9480caagaccatc
ctggctaaca tggtgaaacc ccgtctctac taaaaataca aaaaaattag
9540tcgggcatgg tggtgggtgc ctgtagtccc agctactcgg gaggctgagg
caggagaatg 9600gcgtgaaccc gggaggcgga gcttgcagtg agccgagatt
gtgccactgc actccagcct 9660gggtgacaga gcaagactct gtctcaaaaa
aaaaaaaaaa aaaaaaaaaa aaagggtgac 9720gaagcttcaa tctcctgaaa
ggaagcaact gccgcctttg attcgatacc caccaaaatc 9780cgtgaagaag
gaaggcaaaa taaaaacact tcctgattga actggaaaga tttccgcaat
9840agaagaccca ctgtccaagg aattctaaag gatgctttcc aggcagaaga
aaatgacccc 9900agaggaagat cagagattca ggaaagaaat ggagagtgat
aaaaatggaa aattcggggg 9960ccaatttaaa caaaagctga ctgctctaca
actgttgtgt ctctatcttt tgtaacatat 10020atgtgtgtgt agcttttttt
tttttttttg tcaagatgga ttctcactct gtcgcccagg 10080ctacagtgaa
atggcacggt ctcggctcac tgcaacctct gccccttggg ctcaaatgat
10140tctcttgcct cagcctcctg agtagctgag attacaggtg cctggcacaa
tgcctggcta 10200atttttgtat ttttactaga gatgggattt ctccatgttg
gccaggctgg tcttgaacac 10260ctgacctcag gtgatccacc tgcctgggcc
tcccaaagtg ctaggattac aggcgcgagc 10320cactgcatct ggcctatgtg
tgtgtttata tggaattaaa acacatggca ataataccct 10380ccaaattggg
agaaaccaaa aatagcattt aaatgttgta agctccctgc ataatcaaga
10440agagaataga tttacgttag attttgatac ctggaggatg aatgttgtaa
tttctagggt 10500gaccatgaaa agaggagaca acggtgtatg tttttttttt
tttgagatgg agtctcactt 10560tgtcacccag gctggagtgt tgtggtgtga
tcttggctca ctgcaacctc ctcctcttgg 10620gttcaggcca tcctcccacc
taggcctcca gagtaggtgg gatcacaggc acctgccacc 10680acacctggct
aatttttttt tttttttaaa tatttagtag agatggggtt tcaccatgtt
10740ggccaggctg gtcttgaact cctgacctca ggcgatctgc ctacctctgc
ctctcaaagt 10800gctgggatta caggtgtgag ccatcgcgcc cggccaacag
tgatcacttt caaactaaca 10860gaggttcaaa aataaaatca gacttaacca
aaaaccaggt aacagagctg gtaggatata 10920cagaaagact gacctcacgt
atatcaacga ttacagttaa tattaatgaa ggaaatgctc 10980tagtttaaaa
acgagggttg tcaaagaccc cacataagaa gctccttacc agcggtgcac
11040ctagaaccta aggaaacagg acagatgaag gaggacgcgc ccccgccgct
gtcctgcgcc 11100tcagccatcc tatgagacgg gaaaggtttc tgtctgcagc
tgggcccgtg ctctttacca 11160gctcctggct ttcttctctg gaaggttcct
gcctgttttg ccctcacacc tgctcctctc 11220tcagccctct caggggtggg
gctggaggcc accaaagagc ctcctctgct ctccagttgc 11280tcgactgctc
ctcatttccc cctggggtct gcgtcagggt ttccttcttt tccagcccca
11340ccccgcgtgc atcccacctg gtctcgggtc ggggctgctc ccgcttactg
ccccctgccc 11400aggctggtgt gcaccccctc tggctgcttt caaggcctct
tctctcttct cggcaggaca 11460ggcacaggca ggtggccagg tgtcatgctt
agctccccgc ccagtgagat tctttcattt 11520aacaatcttc ccctgaatag
ttcatgttca ttgctgaaaa tttgaaaaat atggaaaagc 11580acaaagatta
agatataaac cgccctcaat tcccctgccc agagagagtc actgctatga
11640cttggtgact aggaacctta tttctctctc gctctttttt ttttttttga
gacagagtct 11700tgctctgtca cccaggctgg agtgcagtgg ctcgatctca
gctcactgca acctccgcct 11760cctgggttca agcgattctc ctgcctcagc
ctcttgagta gctgggatta caggcacctg 11820ccaccatgcc cggctaattt
ttgtattttt agttgagaga gggtttcatc ttgttggtca 11880ggcggacttg
aactcctgac ctcaggtgat cagcccacct cggcctccca aagtgctggg
11940attacaggtg tgagccactg cgccttcatc tctcttctgt gtatgtgtac
gctgtttttt 12000ctttagaatg ggggacgtta tcaggctcta catggtgtgt
agtcggctag catgttgtaa 12060gcctttccct gtgtcacaag tgctcatctg
gaacaggatt ctaatgactg cctgtggcta 12120tgttgggatt cctttaactc
agctccttct gcccagcatc tatctttttt ccatcttttg 12180tcctaagtgt
tgctataata aatcattgat cacacatgcc tgactgtttg cataggataa
12240attacgggaa atgtttttgc tgttcaggga ctgtgcccat ttttaggcct
cagagacacc 12300atgccagact gcccagtatt gatctttact ctttttagat
gatgccaaac ttttctgtga 12360actttaaaaa cctgtgtctt gacagtccat
ttctgtaagt ctttcacatt agatttcctg 12420tcaggatgat agtcaattct
aggcagatga tgttttctca gccatggctg aagcagttgt 12480gatttgttgt
ggccatgtaa agtcccgatg atccattgcc tccctggatg ggttggaata
12540atttggtttg ggagcatata acagaatgac ctggagtcac agcagctcag
acggaagtgt 12600atttctccct tacagatgaa agaattccag gccaggctgg
aatgacaact gcacacagtc 12660atctgggccc cctccttcca gctcccatca
ccccaggatg tggcttttat gcagatgatc 12720caaaatggct gctcaagtcc
cagccaacac atcccattcc agggagcagg aaaaaggtgt 12780gtctttccct
tcattttatg tgattccttt ctagaagtac tactcattac ttctgcttgc
12840atctccctgg ctagcactta cttagttata tggccatagc tagctgaagg
aaggacaggg 12900actgtcatac actagctaag aggcaaactg cttagataaa
aaggtctcta aagaaggtca 12960gagcggctgc tagggtgcaa ctctattact
tattgttatg ggacgaactg tgtccctcat 13020tcaggttgat gtcctaagcc
ccagaacctc agaatgggat tgtatttgga gacaggttct 13080ttaaggaggt
aaggaggcta aaatgagatc attagggtgg gccataatcc gactgatgtc
13140ttacaagaag agattaggac acggacatgc tcagagggac ggccacgtga
ggacaccaag 13200aaaggcagct gtctgcaagt caaggacagg gctcagggga
aaccaacctt gccaacacct 13260tcatctcgga cttctagcct ctaggaccat
gagaagatac atttctgttg tttaagctgc 13320ccggtctgtg gtactttgtt
atggcagccc aagtaaacaa atacagtcat ctgctgctgg 13380aacaaatcac
cccagcactg tggcttggca gcacacatgt ctagtcatag agttatatgt
13440agttacgtgt agagccatat gtatcgtcac acgttctgtg ggtcaggaat
ttggacccag 13500cttaaccagc tccacttctc gccagggttc agtcaaatac
cagctgcctc ccacctgaga 13560gctcagccgg ggaagggtcc ctttccaatc
tcacgtggtg ttggcaggat ccagttcctc 13620atggcctgct ggactgagaa
cctcagttct cactgcctgt tggccagagg ccgcctttat 13680gtcctcgcca
tgtgggcctc tccaacatgg cagctgactt catcagagca tccatgccaa
13740gaaggcaaca gagagggcca gggagactga agtcataccc ttttgcgacc
tagtcatggg 13800gtgacattcc atcacctttg cccattggtt agaagcaggc
caccaggtac agcccaagct 13860cacggggagg ggtcatacaa gggtgtcaat
accaggaggt gaggggtgct ggggccatct 13920tatgagtctg cccactgagg
taactaacaa ccttgaggcc tgacacagtg gacaaaggcc 13980cttattaaca
gcagagaact gggaacttta tttatttatt tatttttgag acagagtctc
14040actcttgtca cccaggctgg agtgcaatgg catgatcttg gctcactgca
acctccacct 14100cccaggttca agcaattctg cctcagcctc cggaatagct
gggactacag gcatgcacca 14160ctacacccgg ctaatttttg tatttttagt
agagacaggg tttcgccatg ttggccaggc 14220tggtctcgaa ctcctgacct
ctggtgatct gcctgccttg gcctcccaaa gtgctgggat 14280tacaggcgtg
agccaccgca cctcgctgga acttaatttt tttagagaca gtgtcgctct
14340atcacccaag ctggagtgca gtggtgcaat cctagctcac ttgcagcctc
aaattcctgg 14400gttcaggtga tcctcccaca tcagcctccc aagaactggg
aactaacagc tgtttctctg 14460ctgtccttct caagaaaagg gaggctactg
ctaccccact ggggacaatg ctgggtttcc 14520ctttaggaca ggctctgaga
caaggcggag gtgctgtttg tggccacaga gcaggggact 14580ctgggttgca
ggtgtggcct ggctaaagta ggctttactg ggctcctctc tgcctgcatc
14640accccccggc tgggcggttg tctctgaggc caaccttact ccctgctggg
caggctggac 14700agctgccctc tccgtttgcc cctctaccac ccaaaaggca
ggaggctctg gagaccagga 14760ccctgcccgc cacggcctgt gtcccaggcg
tgagggggtg ccccacagac ctctgctgag 14820ctgctgctga atgacgcccc
ttgggggtcc tgccggaagg tcagagcagg ggtgcactcc 14880cataaagaaa
cgcccccagg tcgggactca ttcctgtggg cggcatcttg tggccatagc
14940tgcttctcgc tgcactaatc acagtgcctc tgtgggcagc aggcgctgac
cacccaggcc 15000tgccccagac cctctcctcc cttccggggc gctgcgctgg
gaccgatggg gggcgccagg 15060cctgtggaca ccgccctgca ggggcctctc
cagctcactg ggggtggggt gggggtcaca 15120cttggggtcc tcaggtcgtg
ccgaccacgc gcattctctg cgctctgcgc aggagctcgc 15180ccaccctctc
cccgtgcaga gagccccgca gctggctccc cgcagggctg tccgggtgag
15240tatggctctg gccacgggcc agtgtggcgg gagggcaaac cccaaggcca
cctcggctca 15300gagtccacgg ccggctgtcg ccccgctcca ggcgtcggcg
ggggatcctt tccgcatggg 15360cctgcgcccg cgctcggcgc cccctccacg
gccccgcccc gtccatggcc ccgtccttca 15420tgggcgagcc cctccatggc
cctgcccctc cgcgccccac ccctccctcg ccccacctct 15480caccttcctg
ccccgccccc agcctcccca cccctcaccg gccagtcccc tcccctatcc
15540cgctccgccc ctcagccgcc ccgcccctca gccggcctgc ctaatgtccc
cgtccccagc 15600atcgccccgc cccgcccccg tctcgccccg cccctcaggc
ggcctccctg ctgtgccccg 15660ccccggcctc gccacgcccc tacctcacca
cgccccccgc atcgccacgc cccccgcatc 15720gccacgcctc ccttaccatg
cagtcccgcc ccgtcccttc ctcgtcccgc ctcgccgcga 15780cacttcacac
acagcttcgc ctcaccccat tacagtctca ccacgccccg tcccctctcc
15840gttgagcccc gcgccttcgc ccgggtgggg cgctgcgctg tcagcggcct
tgctgtgtga 15900ggcagaacct gcgggggcag gggcgggctg gttccctggc
cagccattgg cagagtccgc 15960aggctagggc tgtcaatcat gctggccggc
gtggccccgc ctccgccggc gcggccccgc 16020ctccgccggc gcagcgtctg
ggacgcaagg cgccgtgggg gctgccggga cgggtccaag 16080atggacggcc
gctcaggttc tgcttttacc tgcggcccag agccccattc attgccccgg
16140tgctgagcgg cgccgcgagt cggcccgagg cctccgggga ctgccgtgcc
gggcgggaga 16200ccgccatggc gaccctggaa aagctgatga aggccttcga
gtccctcaag tccttccagc 16260agcagcagca gcagcagcag cagcagcagc
agcagcagca gcagcagcag cagcaacagc 16320cgccaccgcc gccgccgccg
ccgccgcctc ctcagcttcc tcagccgccg ccgcaggcac 16380agccgctgct
gcctcagccg cagccgcccc cgccgccgcc cccgccgcca cccggcccgg
16440ctgtggctga ggagccgctg caccgaccgt gagtttgggc ccgctgcagc
tccctgtccc 16500ggcgggtccc aggctacggc ggggatggcg gtaaccctgc
agcctgcggg ccggcgacac 16560gaacccccgg ccccgcagag acagagtgac
ccagcaaccc agagcccatg agggacaccc 16620gccccctcct ggggcgaggc
cttcccccac ttcagccccg ctccctcact tgggtcttcc 16680cttgtcctct
cgcgagggga ggcagagcct tgttggggcc tgtcctgaat tcaccgaggg
16740gagtcacggc ctcagccctc tcgcccttcg caggatgcga agagttgggg
cgagaacttg 16800tttcttttta tttgcgagaa accagggcgg gggttctttt
aactgcgttg tgaagagaac 16860ttggaggagc cgagatttgc tcagtgccac
ttccctcttc tagtctgaga gggaagaggg 16920ctgggggcgc gggacacttc
gagaggaggc ggggtttgga gctggagaga tgtgggggca 16980gtggatgaca
taatgctttt aggacgcctc ggcgggagtg gcggggcagg gggggggcgg
17040ggagtgaggg cgcgtccaat gggagatttc ttttcctagt ggcacttaaa
acagcctgag 17100atttgaggct cttcctacat tgtcaggaca tttcatttag
ttcatgatca cggtggtagt 17160aacacgattt taagcaccac ctaagagatc
tgctcatcta agcctaagtt ggtctgcagg 17220cgtttgaatg agttgtggtt
gccaagtaaa gtggtgaact tacgtggtga ttaatgaaat 17280tatcttaaat
attaggaaga gttgattgaa gttttttgcc tatgtgtgtt gggaataaaa
17340ccaacacgtt gctgatgggg aggttaattg ccgagggatg aatgaggtgt
acattttacc 17400agtattccag tcaggcttgc cagaatacgg ggggtccgca
gactccgtgg gcatctcaga 17460tgtgccagtg aaagggtttc tgtttgcttc
attgctgaca gcttgttact ttttggaagc 17520taggggtttc tgttgcttgt
tcttggggag aatttttgaa acaggaaaag agagaccatt 17580aaaacatcta
gcggaacccc aggactttcc ctggaagtct gtgtgtcgag tgtacagtag
17640gagttaggaa gtactctggt gcagttcagg cctttctctt acctctcagt
attctatttc 17700cgatctggat gtgtcccaga tggcatttgg taagaatatc
tctgttaaga ctgattaatt 17760tttagtaata tttcttgttc tttgtttctg
ttatgatcct tgtctcgtct tcaaagttta 17820attagaaaat gattcggaga
gcagtgttag cttatttgtt ggaataaaat ttaggaataa 17880attattctaa
aggatggaaa aactttttgg atatttggag aaattttaaa acaatttggc
17940ttatctcttc agtaagtaat ttctcatcca gaaatttact gtagtgcttt
tctaggaggt 18000aggtgtcata aaagttcaca cattgcatgt atcttgtgta
aacactaaac agggctcctg 18060atgggaagga agacctttct gctgggctgc
ttcagacact tgatcattct aaaaatatgc 18120cttctctttc ttatgctgat
ttgacagaac ctgcatttgc ttatcttcaa aatatgggta 18180tcaagaaatt
tcctttgctg ccttgacaaa ggagatagat tttgtttcat tactttaagg
18240taatatatga ttaccttatt taaaaaattt aatcaggact ggcaaggtgg
cttacacctt 18300taatccgagc actttgggag gcctaggtgg acgaatcacc
tgaggtcagg agtttgagac 18360cagcctggct aacatggtga aaccctgtct
ctactaaaaa tacaaaaatt agctggtcat 18420ggtggcacgt gcctgtaatc
caagctacct gggaggctga ggcaggaaaa tcgcttgaac 18480ccgggaggca
gagtctgcag tgagttgaga tcacgccact gcactccagc ctgggtgaca
18540gagcgagact ctatctcaaa aaaaattttt tttaatgtat tatttttgca
taagtaatac 18600attgacatga tacaaattct gtaattacaa aagggcaata
attaaaatat cttccttcca 18660cccctttcct ctgagtacct aactttgtcc
ccaagaacaa gcactatttc agttcctcat 18720gtatcctgcc agatataacc
tgttcatatt gtaagataga tttaaaatgc tctaaaaaca 18780aaagtagttt
agaataatat atatctatat attttttgag atgtagtctc acattgtcac
18840ccaggctgga gtgcagtgat acaatctcgg ctcactgcag tctctgcctc
ccaggttcaa 18900atgcttctcc tgcctcagcc ttctgagtag ctgggattac
aggcgcccac caccatgtcc 18960agctaatttt tgtattttta gtagagatgg
ggtttcacca tgttggccag gctggtcttg 19020aactcctgac cttgtgatct
gtccacctcg gcctcccaaa gtgctgggat tacaggtgtg 19080agccaccatg
cctggctaga ataataactt ttaaaggttc ttagcatgct ctgaaatcaa
19140ctgcattagg tttatttata gttttatagt tattttaaat aaaatgcata
tttgtcatat 19200ttctctgtat tttgctgttg agaaaggagg tattcactaa
ttttgagtaa caaacactgc 19260tcacaaagtt tggattttgg cagttctgtt
cacgtgcttc agccaaaaaa tcctcttctc 19320aaagtaagat tgatgaaagc
aatttagaaa gtatctgttc tgtttttatg gctcttgctc 19380tttggtgtgg
aactgtggtg tcacgccatg catgggcctc agtttatgag tgtttgtgct
19440ctgctcagca tacaggatgc aggagttcct tatggggctg gctgcaggct
cagcaaatct 19500agcatgcttg ggagggtcct cacagtaatt aggaggcaat
taatacttgc ttctggcagt 19560ttcttattct ccttcagatt cctatctggt
gtttccctga ctttattcat tcatcagtaa 19620atatttacta aacatgtact
atgtgcctgg cactgttata ggtgcagggc tcagcagtga 19680gcagacaaag
ctctgccctc gtgaagcttt cattctaatg aaggacatag acagtaagca
19740agatagataa gtaaaatata cagtacgtta atacgtggag gaacttcaaa
gcagggaagg 19800ggatagggaa atgtcagggt taatcgagtg ttaacttatt
tttattttta aaaaaattgt 19860taagggcttt ccagcaaaac ccagaaagcc
tgctagacaa attccaaaag agctgtagca 19920ctaagtgttg acatttttat
tttattttgt tttgttttgt tttttttgag acagttcttg 19980ctctatcagc
caggctggag tgcactagtg tgatcttggc tcactgcaac ctctgcctct
20040tgggttcaag tgattctcat gcctcagcct cctgtttagc tgggattata
gacatgcact 20100gccatgcctg ggtaattttt tttttttccc ccgagacgga
gtcttgctct gtcgcccagg 20160ctggagtgca gtggcgcgat ctcagctcac
tgcaagctcc gcttcccgag ttcacgccat 20220tctcctgcct cagtctccca
agtagctggg actacaggcg cctgccacca cgtccagcta 20280atttttttgt
atttttaata gagacggggt ttcaccgtgt tagccaggat gatcttgatc
20340tcctgacctc gtcatccgcc gaccttgtga tccgcccacc tcggcctccc
aaagtgctgg 20400gattacaggc atgagccact gtgcccggcc acgcctgggt
aatttttgta tttttagtag 20460agatggggtt ttgccatgat gagcaggctg
gtctcgaact cccggcctca tgtgatctgc 20520ctgccttggc ctcccaaagt
gctaggatta caggcatgag ccaccatacc tggccagtgt 20580tgatatttta
aatacggtgt tcagggaagg tccactgaga agacagcttt tttttttttt
20640ttttttgggg ttggggggca aggtcttgct ctttaaccca ggctggaatg
cagtatcact 20700atcgtagctc acttcagcct tgaactcctg ggctcaagtg
atcctcccac ctcaacctca 20760caatgtgttg ggactatagg tgtgagccat
cacacctggc cagatgatgg cttttgagta 20820aagacctcaa gcgagttaag
agtctagtgt aagggtgtat gaagtagtgg tattccagat 20880ggggggaaca
ggtccaaaat cttcctgttt caggaatagc aaggatgtca ttttagttgg
20940gtgaattgag tgagggggac atttgtagta agaagtaagg tccaagaggt
caagggagtg 21000ccatatcaga ccaatactac ttgccttgta gatggaataa
agatattggc atttatgtga 21060gtgagatggg atgtcactgg aggattagag
cagaggagta gcatgatctg aatttcaatc 21120ttaagtgaac tctggctgac
aacagagtga aggggaacac cggcaaaagc agaaaccagt 21180taggaagcca
ctgcagtgct cagataagca tggtgggttc tgtcagggta ccggctgtcg
21240gctgtgggca gtgtgaggaa tgactgactg gattttgaat gcggaaccaa
ctgcacttgt 21300tgaactctgc taagtataac aatttagcag tagcttgcgt
tatcaggttt gtattcagct 21360gcaagtaaca gaaaatcctg ctgcaatagc
ttaaactggt aacaagcaag agcttatcag 21420aagacaaaaa taagtctggg
gaaattcaac aataagttaa ggaacccagg ctctttcttt 21480tttttttttt
tgaaacggag tttcgctctt gtcacccggg ctggagtgca atgatgtgat
21540ctcagctcac taaaacctct acctcctggg ttcaagtgat tcttctgcct
cagcctccca 21600agtaactggg attacaggcg tataccacca tgcccagcta
atttttgtgt ttttagtaga 21660gatggggttt caccatgttg gccaggctgg
tctcgaactt ctgacctcag gtgatccact 21720cgcctcagcc tgccaaagtg
ctgggattac aggtttgggc cactgcaccc ggtcagaacc 21780caggctcttt
cttatactta ccttgcaaac ccttgttctc attttttccc tttgtatttt
21840tattgttgaa ttgtaatagt tctttatata ttctggatac tggattctta
tcagatagat 21900gatttgtaaa aactctccct tcctttggat tgtcttttta
ctttcttgat agtgtctttt 21960gaagtgtaaa agtttttaat tttgatgaag
tcgagtttat ctattttgtc tttggttgct 22020gtgcttcaag tgtcatatct
aagaaatcat tgtctaatcc aaagtcaaaa aggtttactc 22080ctatgttttc
ttctaagaat tttagagttt tacatttaag tctgatccat tttgagttaa
22140tttttatata tggttcaggt agaagtccaa ctttattctt ttccatgtgg
ttattcagtt 22200gtcccagcac tgtttgttga agagactatt ctttccccat
ggaattatct tagtaccctt 22260gttgaaaatt aatcgtcctt aattgtataa
atttatttct agactgtcag ttctacctgt 22320tggtctttat gtcgatcctg
tgccagtacc atacagtctt gattactgaa gtttgtgtca 22380cagtttaaat
tcatgaaatg tgagttctcc aactttgttc cttttcaaga ttgatttggc
22440catgctgggt cccttgcatt tccgtacgaa ttgtaggatc agcttgtcag
tttcaacaaa 22500gaagccaagt aggattctga gagggattgt gttgaatctg
tagatcaact tggggagtat 22560tcgcatctta acaatattgt cttccaccta
tgaacatggg caaactttgt gtaaatggtc 22620agattgtaag tatttcgggc
tgtgtgggca cagtgtctct gtcacagcta cgcggctctg 22680ccattgtagc
atgaaagtag ccataagcaa tatgtatgag tgtctgtgtt ccaatagaat
22740tttattaatg acaaggaagt ttgaatttca tataattttc acctgtcatg
agatagtatt 22800tgattatttt ggtcaaccat ttaaaaatgt aaaaacattt
cttagcttgt gaactagcca 22860aaaatatgca ggttatagtt ttcccactcc
taggttaaaa tatgatagga ccacatttgg 22920aaagcatttc tttttttttt
tttttttttt tttttgagac ggagtttcac tcttgttgcc 22980caggctggag
tgcagtggcg cgatctcggc tcactgcaac ctctgcctcc caggttcaag
23040acattctcct gcacggcctc cctagtagct gggattacag gcatgcgcca
ccacacccag 23100ctaattttgt atttttagta gagacggggt ttctccatgt
tggtcaggct ggtcttgaac 23160tcctgacctc aggtgatcca cccgcctcag
cctcccaaag tgctgggatt acagggtgtg 23220agccaccaca ccctgctgga
aagcatttct tttttggctg tttttgtttt ttttttaaac 23280tagttttgaa
aattataaaa gttacacata tacattataa aaatatcttc aagcagcaca
23340gatgaaaaac aaagcccttc ttgcaagtct gtcatctttg tctaacttcc
taagaacaaa 23400agtgtttctt gtgtcttctt cccagatttt aatatgcata
tacaagcatt taaatgtgtc 23460attttttgtt tgcttgactg agatcacatt
acatatgtat ttttttactt aacaatgtgt 23520catagatatt gttccatagc
agtacctgta attcttatta attgctatgt aatattttag 23580aatttctttt
taaaagagga cttttggaga tgtaaaggca aaggtctcac atttttgtgg
23640ctgtagaatg tgctggtgac atattctctc taccttgaga agtccccatc
cccatcacct 23700ccatttcctg taaataagtc aaccacttga taaactacct
ttgaatggat ccacactcaa 23760aacatttagt cttattcaga caacaaggag
gaaaaataaa ataccttata aagcactgtt 23820taatattgta ttaaattgga
tcaatttggg ggctagaatg tatgttagag acatgatatg 23880tccataggtc
cttgctatca cagtgaggtc tcagggacag tcgtttggta tcatttggga
23940tctcataagc agactctctc tgcttgacct gacaaatcag agtctgtgtt
ttaacaggtt 24000cagtgagtga cttacatgca cattggagtt tgggaagctc
cactgtaggt gcttagacct 24060tacctttgtt gttgctaata acaatgcaag
catttgggag gaagacctgt gttgctcata 24120tgtgtccagg tgtagctgag
gtggccttgc ttatctgctg tagggccgtt gagcatttct 24180gtagctgtga
tgagtgagct gaggtgagcc tgcggagagc tcccagccat tggtagtggg
24240actcgcttag atgaactgga aggacccttt catctgagca gccactatgg
agaaaaacaa 24300ccgaatgagg ggagagacaa tgtgcaattt tatttagggc
acaaaggaga gctgtggtta 24360gaaggtgaca tttgagtgga aagggggcaa
gccatgtgta tagcgggaga agagaggtcc 24420aggcagagtt aacagaaggc
agaaatgctt tccatgtttg agaaccagta aggaggccag 24480tggctgaagt
aaggtgaagg gcagaaataa ggatgaggct gcgagagatg agaggttaga
24540gacgagcgtc ttgtgcacca agataagctt gtgtggtcaa aacaagtagt
ttaatttatg 24600tttttaaaag atcattttgg ctgggcacaa tggttcatgc
ctgtaatacc agtagtttga 24660gacggtgtgg tgggaggatt gcctgaggcc
agacgaccag catagccaac atagcagcac 24720ctataaggtc tctacaaaaa
actttaaaaa attagctggg catagtggtg tgtgcctgta 24780gtcccagcta
ctcaggaggc tgaggaggct ggaggattgc ttgagtccag gagtttgagg
24840ctgcagtgag ctatgattat gccactacac tacaacctgg gcaagagagt
gagaccctgt 24900ctctaaatat acacacacac acacacacac acacacacac
acacacacac acacacacac 24960acacacatat atatgtatat atatgcattt
agatgaaaag atcactttga caataccaca 25020tgctggtgag gatttagaaa
aactaggtca cttattgctg gtgggaatat aatatagtac 25080ggccactctg
gaaaacagtt tggcagtttg tcataaaact gaacataccg ttagtataca
25140gcccagcagc aactacaatc ctgggcatta atcctagaga aatgaaacct
taatgttcac 25200ataaaaacct atactcaagt atgcatagca gctttaccca
taatatctaa gaactggaat 25260cagctcagat gtccttcaac aggtgaatgg
ttaaactact cagtaataaa aaggaatgag 25320ctactgatag catgcaacag
tttaggtgaa gttatgctaa tgaaaaaagc caatcccaaa 25380aggttataca
tactgtatga ttctatgttt ttttgcaatg gcacagtttt agggatggag
25440aatagattag tggttgcctg gggttagaga tggggtagta gagtaggtta
gtggtggcag 25500aggagagaaa agagagggag gtgaatgtgg ttataaaagg
acaacacagg ggaatacttg 25560taatggaaat gctttgtctt tttttttttt
tttttttttt tggcgacaga gtcttgctct 25620gttgcccagg ctggagtgca
gtggcatgat cttttctcac tgcaacctct gcctcctggg 25680ttcaagtgat
acttgtgtct cagtctccca tgttcagagt gaaacaaacc agaggtaatg
25740ttcatccaaa taatccaaca cacatgacat taaaacatca agatcaggtc
ggacgtggtg 25800gctcatgcct gtaatcccag cacttttggg aggccaaggt
gggcagatca cttgaggtca 25860ggagttcgag accagccggg ccaacatgat
gaaaccccat cttgactaaa aatacaaaaa 25920ttagccgggc atggtggtgt
gcacctgtag tcccagctac ttgggaggct gaggcaagag 25980aactgcttga
acccgagggg cagaggttgc agtgagctga gagtgcgcca ttgcacttca
26040gcctgtgtga cagagtaaga ctccatctcc aaaaaaaaaa aaccaagatc
aattaaaata 26100cagcattact gggccgggtg tggtggctca cacctgtaat
cccagcactt tgggaggccg 26160agatgggcag atcacgaggt caggagatcc
agaccatccc ggctaacacg gtgaaacccc 26220gtctctacta aaaaatacaa
aaaattagcc gggtatagtg gtgggtgcct gtagtcccag 26280ctacttggga
ggctgaagca ggagaatggt gtgaacccgg gaggcagagc tggcagtgag
26340ctgagatcgc gccactgcac tccagcctgg gcgacagagc aagactccgt
ctcgggggaa 26400aaaaaaaaat aaataaatag aatgctgtag tgtccttgag
tttacatgcc cctccttacg 26460cttgtgtgcc cgtgcagatt gcttgattac
acaattagag gaggctggcg gaggattgtt 26520ttaatttttt tttttttgag
acagtctggc tctgttcccc aggctagagt gcaatggcgc 26580aatcttggtg
cactgcaacc tctgcctcct gggttcaagc agttcttctg ccgcagcctc
26640ccgagtagct gggattatag gcgcccgcca ccacgcccaa ctattttttg
tatttttagt 26700agagcagcgt ttcaccatgc tggccaggct ggtctcgaac
tcctgacctc agatgatctg 26760ctgccccagc ctcccaaagt gctgggatta
caggcgtgag ccacacctgg ccgtttgttt 26820taattttgaa ggtgaagtga
aagtgactac atttaccaaa agtgattgaa aagccaggac 26880tgttcttacc
ctgtttttcc agttcttgct cagagcaagg tggtttcttt ttcacttaat
26940caccatactt acttttcatg tagaacaagt cagtttgagt tatcagttca
tcatcttaac 27000taaattccat gggggaagga attagtttta gtttcttaaa
cttccaggtt tgcttattgg 27060acaaaatgag atagcaaggc agtgttttta
agttagattt tttatttctt tggtaataca 27120attttctcag aaacttagta
gtcttttagt ttagttgttt ttagttggtc ctatgttttg 27180gatcacccct
ctctacttta ttttgatagt gccaactgtg aagacatctg aagccatagg
27240tttggatggg aaggaggcat ctttagcctg atcatcttcg ccaggctgtt
tatctccttt 27300tgcttggctg agaagtctta ataggaggct tattcccagc
tatttgggga catagaagca 27360gttagccatt gcttatattt tactgaggtc
tgtgtggtat gttgattgta gtcagttaac 27420gattttgaga actgaaggca
gcctggtata tatagagtag gtattagact gtgtttcttc 27480taattgaatt
tcccatctct tgtaatctat gccatcatct tctgtactgc tgagaaagaa
27540agaaagtttc taatcaaact ataccactgg ttgtaagatg cagtttggct
ttagtgatgt 27600taacacatga ttcaaacgtg aaattgattg agtattggtg
aaatacagag gagatttaaa 27660gccagaagac ctgggtttaa atgctggctg
tatgacttca tatctgtgtg atcttgggca 27720tgtcatggtt ggcacttcaa
tttcttctct ctataatggg ggaagtgagg ccagtcatgg 27780tggctcatac
ctataatccc agtgctttgg gaggccaaga tgggaagatc gcttgaggcc
27840aggagtttga gcaattgggc aacatcgtga ggccccgtct ctacaaaata
ttttgaaaaa 27900attagccagg cccagtggtg cgtgcctgtg gtccgcgcca
ctcaggaggc tgagacggga 27960ggatcctttc agcctaggag tttaaggcta
aagtgagcca tgattgtgct atcgtactcc 28020agcctgggca gcagagcaag
atcctgactc taaaaaaaag taaaataaag taaaatgggg 28080gaaatgaact
gctttagtaa catcatctgt tttttctgtg agcagcgtag cttgacagcc
28140attggtgaac tcgtgccctg tgcttccctg tccagatccc cattctgccc
gcaacatgga 28200gtataacggt ttattcatag tagtcgagaa acactcactg
aatgaatgaa tgaggtgtag 28260aactaagtgg agtgggtaat tcaacacata
ttaatttcct tctttttttt atttttagaa 28320agaaagaact ttcagctacc
aagaaagacc gtgtgaatca ttgtctgaca atatgtgaaa 28380acatagtggc
acagtctgtc aggtaattgc actttgaact gtctagagaa aataagaact
28440ttgtatattt tcagtcttaa tgggctagaa tattctttgt gtcccagcta
ttttaaatgg 28500attcagaaat ccatttaaga tgaagaagga cccttttccc
atatttctgg ctatatacaa 28560ggatatccag acactgaaat gaataatgtt
ccctttttgt aatcttttat gcaaaaatta 28620aaaccattat ggtaattgaa
caacatgttt atgtttagtt aacaccctta gcaactatag 28680ttattttaaa
accatctatg gtttgatatt tttgcatttg ttgcaatagt aggaacagca
28740caagacagtt cagtttgtct ctcttatttg ctttttcttg gcagtttgct
gtcctattgt 28800acctctgctc ctagcagtgg ctggagccca ctcctctgtg
cttcgggatt agtggggatc 28860gtggggcatt gactgtaggt cagctttcct
tgcttgatct ttctcactgg gatgaactag 28920cagcaccttc ttttgtagct
gctttgcttt tgactatctt tctgaccgtt gttcctagta 28980gctgtagatg
gtaaatatat ttaggcctgt ttccaatggc tcagtaggag acatattcac
29040ctatgatatc tgaattctgt tacccacatg ggcatgcgtg aaatagttgc
cttgccttac 29100tttcccttgg aataaataat tcatgttatt ctcctggtag
aagctagaaa aagcctttat 29160agtcagtcag aaaaaaattt ttagacaaat
aatcttgatt ttagtactga caaaaacgtg 29220tggtgattct ttttttaatt
tttttttgag acggagtttc actcttgttg cccaggctgg 29280agtgcaatgg
cgtgatctcg gctcactgca acctctgcct cctgggttca agtgattctc
29340ctgcctcagc ctcccaagta gctggagtta caggcatgtg ctactgtgcc
cagctaattt 29400tgtattttta gtagagatgt tggtcaggct gatctcgaac
tcccaacctt aggtgatctg 29460cccgcctcag cctcccaaag tgctgggatt
acaggcgtga gccagggcgc ccggtgattc 29520atttgttttt tcaaaaaatt
tcctcttggc cattgctttt cacttttgtt tttttttttt 29580ttttgagacg
gagtcacgat ctgtcaccca ggctggagtg cagtggcatg atcttggctt
29640actgcaagct ctgcctccca ggttcacgcc attctcctgc ttcagcctgg
cgagtagctg 29700ggactacagg tgctcgccac cacacccggc taattttttg
tatttttagt agagatgggg 29760tttcaccgtg gtcttgatct cctgacctca
tgacccgctc aactcagcct cccaaagtgc 29820tgggattaca ggcgtgagcc
accgcgcccg gccctctctt gtctttttat tgtggtaaaa 29880tgcacataaa
attgactgtc ttaaccattt ttaggggtac agttcagtat atatattcgt
29940aatgttgtac agccatcact gccatctact tcataagttt ttcttctgtc
aaaactgaac 30000atctgtcttc attaaactcc ctatcatcca ttctttcctg
tagtcccttt ctactttctg 30060tctgtatgag tgtaactgct ctggagacct
catgtaagtg
gattcctaca ggatttgtgt 30120tttttttttg gtgatctgct tatttttaat
gcctctgtgc atttgtatta tatactttca 30180aagtgatttc acaaaaccgt
ttcattttag gttaactcat ttctgttgtt tgtgaaatac 30240tgtgtatgat
tctgttctgt ttctgtctaa tttgtggaaa tgttgtggga agaaaatgaa
30300ataacaaatg agcatatgtc ctgaaaataa aaatataaaa attctaagtt
agcatgctat 30360tgtagaatac aacgctatga taaaagtagg aaaaaaaaag
gtttgaattc tatctctgct 30420acctgtgtaa gctgggtgac tttagataag
ctgtaacgtg tttgagcctt actggctcat 30480ttttgaaatg taatccctag
ttacacagtt cttgtgggat cagatggtac atgtgaaaca 30540ctgtgaaaaa
gcaactgcat agatatgttc attagccacc tgagcgggaa gcgtatccca
30600ttgcgatgcc catcatccaa agctatatgt tatctttact tttttttttt
tgagacagag 30660tcttgctctg ttgcccaggc tagagtgcag tggtgcaatc
tcagctcact gcaagctcca 30720cctcccgggt tcacgctatt ctcctgcccc
agcctcccaa gtagctggga ctacaggcac 30780ccgccaccat gcctggctaa
atttttgtat ttttagtaga gatggggttt caccgtgtta 30840gccaggatgg
tcttgatctc ctgacctcgt gatccgcccg cctcggcctc ccaaagtgct
30900gggattacag gcgtgagcca ctgcccctgg ccatctttac tttttttgtg
aaatgacttt 30960aaatacttgg caaacatttg gtcattgttc atctgatctc
caccatccag gtctcagaga 31020acataatttc tctctgaaag cttattgacc
caggaaataa gatctctttc aatctgagtg 31080cgtcaggctt tattcttgtc
attttgtctt ttgataattt tcaaatggaa ttcatggaat 31140gttggcttat
attcatatat tagtaaagta tgttgagaca tcttaagatt gatttgtggt
31200tctatatgcc atattaaatc aaaataatag ctgttaatgg ttttcacatt
agtctgtctc 31260ttgtttttat ggagtaatgc tgagagttca ttatgcttgt
tctacagaag agcatgttaa 31320aaggagtttt tggagtcaga gaggttattc
ttggtttcat aggatacact ctatactttt 31380tagggatttc agagtatata
gctgaaggtg atattttatg taaatatgtt ttatggaaac 31440ttattgctca
tcgctgtttc ctgttaactc tcctaaaata taattaaact tttggaactt
31500ttttatagct tttgtgctag actaattttt gtctctaatg aggttatata
aatggcagct 31560tctgacgttt tcaatgtagg aagtcattta aaacttcatg
tatattgtga aaatgtagtc 31620tgctttaagc tctctaaagt ggtctaagtt
actggttcct aagtatggat gagcatcaaa 31680atcatctgga aaatttgtta
aaaatacagt aatgaaggca cctcactgtc ctttttccca 31740aacatacttc
tgcattctgt ttgagtaggt agggactaca catttttcac aagtatcctc
31800ttgggaatac ccaggaatgc ttacttgagc aacctcttac taatatgtac
cttgataagg 31860tggctaggta aacataaata tacaaaaatc catagatctc
ccatatatta gcataaatca 31920gctagaaaat ataacgttta aagatctagt
tcacagtagc accaatatat cgaactctaa 31980ggaatcgata aatatgcaaa
aactttataa aaacttctgt taatgtttct gaaagatata 32040ggtgaccact
ttctagatag gaagatttta tattactaag ttgaattttc tctaaattaa
32100cacagaaatt taaaataatc ttgatcaaaa ttctagtaga ggtatttttg
aacttgttca 32160ctgcaagaat aaatacataa ttgcaaagaa tatctcaaaa
tcatcaccag gcctggtgtg 32220gtggcccatg cctgtaatcc cagcactttg
ggaggctgag gcaggcagat cacctgaggt 32280caagagtttg agaccagctg
gaccagtgcg gtgaaacact gcctctacta aaaatacaaa 32340aattagctgg
gtgtggtggt gcatgcctgt agtcccagct acttgggagg ctgaggcagg
32400agaattgctt gaacccagga ggtacaggtt gcggtgagcc tagatcgcac
cactgcattc 32460cagcctgggc gacaagagca aaattctgtc tcaagaaaaa
agagaaaaaa gaaaaagaaa 32520tcaacactaa tatggtgaga cttaatgtat
gtgacattaa aatagtgatt ggatgttaaa 32580acaggtatag aacagaaaga
agagtgtatg tgtgtatctg tatgaattta tgatgggtgt 32640aacatatatg
tattagggaa atgagggaaa tgatacattt ctctgacttt gggagaacat
32700tatatctcta cctcatattg caaacaaaca taaagttcag attaattacc
taaatgtgaa 32760aaaatgaaat aatttcttta aaaaatgtaa tcttagtttg
aggaaggtta acattataaa 32820ggaaaaaact gttttgagtg gaatatagtt
caatatgtca aaatccacct tcaacaaaat 32880tgaaagtaaa ttgaacttgg
ggaaagtatt gacagcatat agatcaaagg ttactagcct 32940gtgtaaagag
cagttataaa tatcgttaag aaaaacactg tcgacctgtc ggcaccttgt
33000tctccgactc ccagcctcca gaactgtgac gagtaagtgc ttattgttta
aaccacccag 33060tctgtatgtg gtattttgtt atagaaactc aagctgatta
ggacactagt aatcagtaga 33120ctgaaactga aacaaaaata agaacctttt
ttacctgtca aattggcaaa cattaagaat 33180attcagattt ttgtcagagg
tgatacaacc ttctaagaag gcaatttggg aaaatataaa 33240gctttagatt
attatatgtc tgacctagca gttttacctc tagggtgctt acccctagga
33300aagtgtgtaa tgatattggt gcagtgccct tcatcccatt agaaaattaa
aaataacctt 33360aatggcctac cactaaaagg ggattgaaaa tttaagatat
atttatttat gtgtttattg 33420agatggagtc ttgcactgtc cgcctgggcc
agagtgcaat ggtgcgatct cggctcactg 33480caacctctgc ttcccgggtt
catgtgattc tcctgcctca gcctcctgag tagctgggat 33540tacaggctca
caccaccgca cccggctaat tttttgtatt tttagtagag atggggtttc
33600actgtgttgg ccagactggt ctcgaactcc tgacctcatg atccgcgccc
ctcggcctcc 33660cagtgttggg attacaggtg tgagccactg cgcctggcca
gatacattta tacaagagaa 33720tgttagttaa cattcataga tatttatatt
ttgtttactt tttattaaaa aaattttttt 33780tagagacagg atcttactct
gtcacccagg caggatgcag ttgcacaatc atagcccact 33840gcagcctgaa
ctcctgggct taagtgatcc ttctgcctca gccttttgag tacctggggg
33900actttaggca gtgctactat acctggctaa tttttaaatg ttttatagat
gagatcttgc 33960tgtattgccc aggctggtct agaattcctg ggcccaagtg
atcctcccac cttggcctcc 34020caaagcgctg agattacagg catgagccac
cacttctgac caatagatat ttatatttgt 34080gactggaaaa tatattaaca
atgtgttaaa aaattcagtt aaaaaataat gaaagatttt 34140tgcttctggc
taagatagaa taacaaggac agcatttatc ttcttgcctt gaaatagttg
34200aaaacggaag aaatatatgt aacagtggtt ttcaagttat tgggcatcag
gcaaagaaga 34260atagttatcc caggaaaatg aatgtggaga gccctacaat
ttccttacat tactgcctgg 34320tcatggcaag aggaaaaact gagaggagac
tgaggctgag ccagtggttt gctgggttga 34380ggaggcagag ctgggagtgc
agagatgcaa ggtggtgaga gcccatatgg aagaatacca 34440gggaagagag
ctgcagaggg agctccggag acctgcaccc tgccctctca gtaccctgtc
34500atgtgtgtag ctgagtactg acgagcactt gcttgtgcgg aaatgaccca
gggctggagg 34560tagagccacc tgaaaggatt agaaggaaca gttgctgaaa
gtcacacagg gccaggaaga 34620atttctaatc acaccagttg gagtggaaaa
cctcagctct catagagcag gtagggtact 34680cagaagggtt tgcccaccta
gccccagact aagtttcgtt actctgaccc tacctaatat 34740taaaaagaga
ttaattaaat tgttcgcaac aaaaataata tatttcagtg tttgtaacac
34800gtagaagtga attgtatgac aatagcataa aggctggaag agcagaaatt
gacatgtatt 34860tgcgctgggc agaataatgc tcccctcttt ccccaaaaga
tatcaagtcc taatccctgg 34920agcctgtaaa tattacttta tatggaaaat
tgttttatga tgtgattaaa ttcaggatct 34980tgagatgagg gggctatctt
ggatgatctg ggtaggcact aaatgcaatc acatatatat 35040aaaaaggagg
cagagggaga ttttacacac agagagaagg ccctgtgaag atggaacaga
35100aagatttgaa ggtgctggcc ttgaaaattg gagtgatgaa gctataagcc
aaggaatgca 35160gcagccacca aagctggaag aggcacggag cagttctcat
ttagagccta ctccagaggg 35220aatgtggtgc tgccaattcc tttttttttt
ttttttttaa gatatcattt acccctttaa 35280gttggttttt tttttttttt
ttttttttta gtatttattg atcattcttg ggtgtttctt 35340ggagaggggg
atttggcagg gtcataggac aatagtggag ggaaggtcag cagataaaca
35400tgtaaacaaa ggtctctggt tttcctaggc agagggccct gccacgttct
gcagtgtttg 35460tgtccctggg tacttgagat tagggagtgg tgatgactct
taacgagtat gctgccttca 35520agcatctgtt taacaaagca catcttgcac
cgcccttaat ccatttaacc cttagtggac 35580acagcacatg tttcagagag
cacggggttg ggggtaaggt tatagattaa cagcatccca 35640aggcagaaga
atttttctta gtacagaaca aaatggagtg tcctatgtct acttctttct
35700acgcagacac agtaacaatc tgatctctct ttcttttccc acatttcctc
cttttctatt 35760cgacaaaact gccaccgtca tcatggactg ttctcaatga
gctattgggt acacctccca 35820gatggggtgg cggccgggca gaggggctcc
tcacttccca gatggggcgg ccgggcagag 35880gcgcccccca acctcccaga
cggggcggcg gctgggcggg ggctgccccc cacctcccgg 35940acggggcggg
tggccgggcg ggggctgccc accacctccc ggacggggcg gctggccggg
36000cgggggctgc cccccacctc ccggacgggg cgggtggccg ggcgggggct
gccccccacc 36060tcccggacgg ggcggctggc cgggcggggg ctgcccccca
cctcccggac ggagcggctg 36120ccgggcggag gggctcctca cttcccggac
ggggcggctg ctgggcggag gggctcctca 36180cttctcagac ggggcggctg
gtcagagacg ctcctcacct cccagacggg gtggcagtgg 36240ggcagagaca
ttcttaagtt cccagacgga gtcacggccg ggcagaggtg ctcttcacat
36300ctcagacggg gcggcggggc agaggtgctc cccacttccc agacgatggg
cggccgggca 36360gagatgctcc tcacttccta gatgggatga cagccgggaa
gaggcgctcc tcacttccca 36420gactgggcag ccaggcagag gggctcctca
catcccagac gatgggcggc caggcagaaa 36480cgctcctcac ttcctagacg
gggtggcggc tgggcagagg ccgcaatctt ggcactttgg 36540gaggccaagg
caggcggctg ggaggtgaag gttgtagtga cccgagatca cgccactgca
36600ctccagcctg ggcaacactg agcactgagt gagcgagact ccgtctgcaa
tcccggcacc 36660tcgggaggcc gaggctggca gatcacttgc agtcaggagc
tggagaccag cccggccaac 36720acggcgaaac cccgtctcca ccaaaaaaca
cgaaaaccag tcagacatgg cggtgcgtgc 36780ctgcaatccc aggcacttgg
caggctgagg caggagaatc aggtagggag gttgcagtga 36840gtagagatgg
tggcagtaca gtccagcctt ggctcggcat cagagggaga ctgtgcgagg
36900gcgagggcga gggcgaggga attccttaat ttcagtttag tgatactaat
tttggactct 36960ggcctctaaa actgtgaaag aaaaaatttt ttgtttgttt
gtttctttta agccacatag 37020tttgtggtaa tttgttacag cagctgcagg
aaactaattt atgctgcatg tgaaatggtg 37080taataaggta gattgtgatg
aagatacata gtataaacaa ttaagcaaca actaaaagca 37140caacaaggaa
ttatagctaa tgaaccaaaa aaggagatta gaataataaa aatggtgaat
37200cccaaagaag ccagaaatag gggaagaggc aaataaagga aagaaagagc
ttgatggtag 37260atttcaacct aactatgtca aaaaggacat tacatgtaaa
aggcagcgat ttttcagatt 37320gaatggaaaa gtaagactcg gtatatgctg
ctgcctgcaa gaaacacatt ctaaatataa 37380aggcaaaaat aacctacagg
taacagaacg gaaagaagtt cactgtgctt acaagaatta 37440gatgcaagct
agactggttc tgttaatatc agacaaagtg gatttcaaag caaaggctct
37500tgcccaggat gagatggtca tttcataatg atgaagggga ttcgttcatc
agcctggcat 37560agcaagctga aatgtttatg caccggacta cagagctaaa
atacatgaag caaagcctga 37620cagaactaca agtagaaaca gacaaatcca
cagtgataga gatttcagta gccgctctca 37680atgatttgta gaacacgtag
ccataatatc tggatctaga acacttgacc aacactgtcc 37740cctgtgcaac
ctcattggca tttacaggac actccaccca gcaccagcag aagagacact
37800ctctcaagtg ctcacagaat gtttgccaag atagagcaga tgctgggcca
taaaacaagt 37860ctctaaatta aaagcattca aattattcag agtatgtttt
ctgacctcag tatcattaag 37920ttggaatata ttataggaag ataacctgga
aaagcctcag atatgtggaa aaacccattt 37980ccacatggcc catgggtcag
aagtgaagtc aaaagggaaa tttgaaagtc ttttggattg 38040actgatataa
aaacaataga tttctaaact tgtggggtgc tgttacagca tagtaaatgg
38100aaatttctag cattaaatgc ctgttttagg aaagaaagat ttcaaatcaa
tgacctcagc 38160ttctaccttt ggaaacttga aaatgacaag caaatggaat
ccagagttac cagaagggcc 38220aggtacggtg gcttatgcct gcagttctgc
cactttggga ggccgaggca ggtggattgt 38280ttgagactgg cagttgaaga
ccagcctggg cagcctaggg agaccccata tctacaaaaa 38340acaaaaaaat
tagccaggtg tggtggcatg tgcctgtagt cccagctaac caggagtcta
38400aggtgggagg attgcttgag tctgggaggt tgaggctgca gtgaactgtg
attgtgccac 38460tgtgttccat cctgggcaac agaatgagac cctgtctcaa
aaacaaaaac agttactaga 38520agaatggaca tcataaagat aggagcagaa
gtcagtaaaa tagaaaacaa aaatacatag 38580gaaatcaata aaaccaaaag
ctggttcatc aagaacatca ataaattggt aaagctgata 38640ggaaaaacag
tgaagtcaca aattagcaat atcaggaatg agggagatga cagtagtata
38700gattatatag atattaaaag gactgtatga ggcaggtgtg gtggttcacg
cctgtaatcc 38760cagcaccttg ggaggccgag gtggacagat cacctgaggt
caggagtttg ggaccagcct 38820ggccaacatg gtgaaactct gtctctacta
aaaatacaaa aattagttgg tcgtggtgct 38880gtgtgcctgt aatcccagct
acttgggagg ctgaggcagg agaattgctt gaacctggga 38940ggcggaggtt
gcagtgagct gagattgtgc cgttgcactc cagcctgggt gacagagcaa
39000gactccatct caaaacaaat aaataaataa aaaggactat atggtaatat
tatgaacaac 39060tttatgccaa taaatttgac aacttataga tgaaatggat
gagttccttg aaagacacag 39120aaactattaa agctctctca agaagatata
gataagctga ttagccctat atctatttta 39180ttgaatttaa atgtaaaaat
caatatttag ttactggaaa acttttaagt gtggttggaa 39240atggtatacg
aactttttca actgaatttt atgaagtcta atcacaggta aaggttttct
39300gatgaaaatt tagtgtctga attgagatat actgtaaaaa atgttatata
tcttaattat 39360ttcttcacat taattacatg ttgaaataat actttgggtg
tattgggtta aattaaatat 39420tatgaaaatc ttgcctgttt tctttttact
tttgatgcgt cagctaggaa atataaaagt 39480gtagctcaca ttctgtttct
gttgacagta ctgctttgga gcacagtgtt tgaatgatct 39540atcatttcaa
agacctttcc tcagttcgtt attcatggct gtctgtattc cacatagata
39600aggtctgaaa tactgctaag tggcatgttt tgttttatgc ttttataagt
ttgttgatca 39660ttactgatgt ggacttttgg tgcctcttag gctcattgct
atcttccaac cattgtttgc 39720aatttttacc tagagataaa gagaaagaga
catttggttt cagagtagtt agattgggat 39780catgaaagag caacctcatt
ttgatgcttc aaaaatagca catcccccgt attactggga 39840tttgctattc
ttgggattac ttcaagaaca tccttgtgtt actggtttgg atgcttctga
39900atgctgtgaa gtcagtttca tgtacatggc tcatcagttt agctctctct
tggctttgtt 39960tagacagttg gagcatgatg gcctaaacag cttctttcaa
ttaaacattt taaaatagtt 40020tacaaatagt aaacaaactc cagtttttgt
gactctttgt ctcgcacaac aaaaacacaa 40080tctgaccatg atcatctggc
atcttagggt gaaatatggt tatactttgg cccataccga 40140aagcaagatt
aaaaaggggc aggagagata gactgctgaa ctgattttca aggttccaag
40200aatattgtag gttaagagta aaagtaaact tttggtagaa agcagtgggt
tgtctaggat 40260tgaagtatct gaagttttta aacgaaaatt taaaaagaaa
aatgagaatt gccttacaag 40320tacaatctct tcttttttaa aaaataaact
ttattttgaa atagttttag atttatagaa 40380aaaaattaga tagggtagga
agttttcata taccctacat ccagttaccc cagttattat 40440catcctaatt
tagtgtgaga cattttcatg tttaatgaat caatattgat atgctattaa
40500cttaagtcca gactttattc agattttctt aatttctatg taatgtcctt
tttctgttcc 40560agaattccat gcaggacacc ggatacctca ttacatttca
ttgtcatgtc accttaggct 40620cctcttgaca gtttctcttc tttttttgct
tagaaattct ccagaatttc agaaacttct 40680gggcatcgct atggaacttt
ttctgctgtg cagtgatgac gcagagtcag atgtcaggat 40740ggtggctgac
gaatgcctca acaaagttat caaagtaaga accgtgtgga tgatgttctc
40800ctcagagcta tcattgttgt aggctgagag aagaagcgat cattgagtgt
tcttctgttt 40860tgagtccctg aggatgtctg cacttttttc ctttctgatg
tatggtttgg aggtgctctg 40920ttgtatggtt tggaggtgct ctgttgtatg
gtttggaggt gctctattgt atggtttgga 40980ggtgctctgt tgtatggttt
ggaggtgctc ttgtatggtt tggaggtgct cttgtatggt 41040ttggaggtgc
tctgttgtat ggtttggagg tggtcttgta tggtttgcag gtgctctatt
41100gcatggtttg caggtgctct attgtatggt ttggaagtgc tcttgtatgg
tttggaggtg 41160ctcttgtatg gtttggagat gctctattgt atggtttgca
ggtgctctat tgtatggttt 41220ggaagtgctc ttgtatggtt tggaggtgct
cttgtatggt ttggaggtgc tctgttgtat 41280ggtttggagg tgctctgttg
tatggtttgg aggtgctctt gtatggtttg gaggtgctct 41340attgtatggt
ttggagatgc tctggtatct gcctgcattg cttgccacac ctgcccggtc
41400agaaggcgct atgttgacaa ttgtgcctgc acggtgccta ggtcaatgaa
gggaaccgat 41460ggtagccact ggatgctcct gggaaaatgt cactacaggc
accagagaag ccagagctat 41520gcccaaattt ctatgagtct cagttttctt
aaccataaaa tgggatcaat gtttttgtgg 41580catgtgtatg agtgtgtgtc
tgtgtatgtg tgaggattaa attgtgtatg tgtgaggact 41640aattgccact
actggatcct caaagtggta agaagtgttc ttattaataa tgacatcctt
41700acactcttac ccagcaagat tgatgggtgt ggcactgctt ctctttttcc
atcacatggt 41760ttccatggta tccttttgcc cagggaatct ttgctttgtg
gctagcactt tgttgtttgg 41820ctaatcacgc tttctgtggt caggacgctg
gcttctctgg agccatggga ttctagctcc 41880ctgtcttgtc cctagagtgg
tcactgtctt ctctctccgc ttgcaattcc tgctttgctc 41940gcatctcact
tatgcagtga cgtatatcag tttcaccttg ttctccgtgc ctgctgatca
42000ttggcaccac ttgcatggtg ccatttaggg cctgcttcca gttaagcttg
cttctccaca 42060ggcctaaata tccttgcttg cttcttttat tctcactggc
aggaccaggg cggtctgtct 42120ttgcatgaga cagggtctcg ctcagtcacc
caggctggag tgcagtggct gatcacggct 42180cattgcagcc ttgagctacc
gggctcaagc tatcctcctg gcttggcccc ttgagtagct 42240gggactacag
gcgtgcacca ccatgcccag ctaattttta aaattatttg tagagatggg
42300atctcgccag gttgcccagg ctggtcttga acgcctgggc tcaagtgatc
ctccctcctt 42360ggtttcccaa agtgctggga tcacaggtgt gagccactgt
gcctggccct tgatgtttca 42420gttcttgata tttgatcctc agagtcagaa
aatctaaaaa gagggctatc ccaggttgcc 42480ttggttcatg gcaaatggga
cgttaagagg gcagagagaa tatgaacaga aactgttcta 42540atattggtca
tttaatgtgt aagtattgtt cttttttaaa cctccttcat tttttttcca
42600ggaattgctg gacacagtgg cttggtgtgt gtctgaggac tgtaggccat
ggccctaggt 42660tgtggtttta ggtctcaggt gctcttcctg gctgtctcct
tgcttctttc ccatgtcctc 42720ttctttgttt ccagccattt ctcccttatg
cttaagtttg gtgcagcagg gtttggctgc 42780tctcagattc ctgcttcctc
agatgctgta gttgtcaggc ccagcgggct ggcagcggga 42840tcaggatctg
gctaggtttg ctctcactgt ggcagagtag ggggaggcgt gggagagcac
42900gtgtgacccc aggccagctg tagggagcat aggcatggtc acgtagcctt
caggtcctag 42960actttgtctt ctcatgagta tggctgtgtg tgtatggtga
aaactaggtt ctacttagcc 43020caagaaaatg ggcacatttt gcatgtggtt
tctgtagaga aatgcactgg gtatctgaca 43080tagcctggca gcatgcctcc
ctcaggtagg ttagtctcag gcggtgaagc acgtgtgtcc 43140agcaagaact
tcatatgtgg cataaagtct ccgttctgtg aggtgctggc aaatcaccac
43200caccgtcaag aggctgaagt gatttttgtc tagggaggca ggaaaggctt
cctggagtca 43260gcagccagta ggtgaaagag tagattggag accttcttaa
tcatcaccgc ctcttgtctc 43320aaggggtgcc aggaagctgt ggaggctgaa
cccatcttat gctgccagag agtgggacac 43380catgagggtc aggtcaaggg
gttgtacctt gtttggtaga gaattagggg ctcttgaaga 43440ctttggatgt
ggtcagggga gtgtatcatt taggaagagt gacccggtga ggacgtgggg
43500tagaggagga caggtgggag ggagtccagg tgggagtgag tagacccagc
aggagtgcag 43560ggcctcgagc caggatggtg gcagggctgt gaggagaggc
agccacctgt gtgtctgcgg 43620aagcaggggc aagagggaag aggccagcag
cgtgctgcca tcacccagcg actggcgtag 43680attgtgagag accattccct
gctcttagga ggggctgagt tttagttttc tcttgttata 43740caataagctt
ggtatttgtt tacaaaacat ttgtaaagct aaatcaaggt ttgataaggc
43800ttctagtttt atttaagaag taatgttgaa ataaatgttt gtccaattcg
ctttgctcat 43860ttaaggactt tcagtacaaa ctgcaacaac aggattagga
tttaaacgtt tctgagatgt 43920ttttactcct cagaatttcc cagaatgtga
tctggttttg attttcaagc ttgctgaccc 43980aataggttaa cccacaagtt
ttacgaagac catctcagtc cacttacatc aactgcccat 44040gccacggtta
aagagatcat cgactgatgt ttggcacagc ttcctccctc ttgggtgggc
44100aagcatttgg aagagaaggc tcctatgggt gagagtgggg caccaaagtc
ttccctgtcc 44160catcccctag cttgagaagc ccttctctaa tgtggacttt
gtgccgttag catcgttact 44220agcttgaagt tgaccatctg gacgtacttt
ctggtttagc ctcacaagtg agcaaggagg 44280gttgagagat gtgctgtgag
gaatgtgggg ccccagctgg cagcaggctc tgggtcaggg 44340gggcagggac
cacgggcata cctgacagtg aggaggggcc acacctgcag aaaaggatgc
44400aggactccgc cttgggaagt gttctaggcc agagcgaggg tctgtggttt
ataagtacac 44460ccacagtgct cgggaccctg cagatgtcca gggtgccgtc
tgagcccgta tcatccaaca 44520gaatgttctg ctagtgaaga ttaaagattt
actccagggg ctttaggatt tattatatat 44580atataaatcc tatatatata
attttttttt tttttttttt tgagatggag tttcgctctt 44640gttgcccagg
ctggagtgca atggcgtgat cttggctcac tgcaacctcc gcctcccggg
44700ttcaaactat tctcctgcct cagcctctcg agtagctggg attacaggcg
cccaccacca 44760cacccggcta atttttgtat tttttagtag agacggagtt
tctccatgtt ggtcaggctg 44820gtcttgaact cctgacctca ggtgatctgc
ccgccttggc ctcccaaagt gctgggatta 44880caggcatgag ccaccccacc
tggccaggat ttattgtatt tgaaccatct accattttaa 44940ttttgatgtt
atgtagtatt tgatgataat gaaagttaaa ttgtttttct ttccattttt
45000ctgtttaagt gaatgacctg tatctagttt attcagtaac ttcctgcata
tatttgtttc 45060tttcattctt aatgaatata ttcttaattt agttgctatt
atgttttgct ttgccccaaa 45120attgaaatct tagtttcctt ttagctcgtt
ttagaactag
tgatgggatg tgtcttccat 45180aaatctcttg tgatttgttg taggctttga
tggattctaa tcttccaagg ttacagctcg 45240agctctataa ggaaattaaa
aaggtgggcc ttgcttttct tttttaaaaa tgttttaaat 45300tttaaatttt
tataggtaca cgtattttgt aggtacatgt aaatgtatat atttatgggg
45360tacatgagat attttgatac aggtatacaa tacataataa tcacaccatg
gaaagttgga 45420tatccatgcc ctcaagcatt tatcctttgt gttacaaaca
atccagttac atgctttact 45480tattttattt tatttttgag acagagtctt
gctttcaccc atgctagagt acagtggcat 45540gaccttggct cactgcaacc
tccgcctccc gggttcaacc gaactttggg ctggtctcaa 45600actcctgacc
tcaggtgatc cgcccgcctc ggcctcccaa agtgttggga ttacaggcgt
45660gagccactgt gccgggcctg attgtacatt ttaaaataac taaaacagtc
agggcacagt 45720ggctcatgcc tgtaatccca gcattttggg aggctgaggc
aggtgatcac ctgagatcag 45780gagttcgaga ccagcctggc caacatggag
aaaccctgtc tctactaaaa atacaaaaat 45840tagccaagtg tggtggcggg
cgcctgtaat cctggctact cgggaggctg aggtagggga 45900atcgcttgaa
cctgggggtg gaggttgcag tgagccgaga tcacgccact gcattccagc
45960ctgagcgaca gagtgagact ttgtctcaaa aaataaaaat gaaataaaat
tgggccgggt 46020gtggtggctc acaccttagt cccagcactt tgggaacctg
aggcaggtgg atgcttgaga 46080ccaggagttt gagaccagca tgggcaacat
ggcaaaacgc tgtctgtaca gaaattagct 46140gggtgtggtg gtgcacaact
atagtctcag ctacttggga gattgaggtg ggaggattaa 46200ttgagcctgg
aaggttgaat ctataggtag ctgagattgt gccactgccc ttcagcctgg
46260gcgaccaagt gagaccctgt ctcaaaagaa aaacaaaaaa acaaaaaaca
aaccactatt 46320atcgactata tattattgtc tatgatccct ctgctgtgct
gtcgaatacc aggtcttggg 46380cccttatttc catcactgag caaacttcac
tctgttaagc agcaggtgtg ggatttcatc 46440gttattcagt aattcacaat
gttagaagga aatgctgttt ggtagacgat tgctttactt 46500ttcttcaaaa
ggttactctt tattagatga gatgagaatt aaaaatggta acttacttta
46560tatctttata attgaagccc actagacctt aaagtagtta ccagatgttt
tatgcattta 46620aatggccttt tctctaaaat tagaaagtaa caaggaaaga
aaatgcttcg tttctatgca 46680accctcttgg tgactagtat gtgactctta
atgcaaccct cattgcaccc cctcagaatg 46740gtgcccctcg gagtttgcgt
gctgccctgt ggaggtttgc tgagctggct cacctggttc 46800ggcctcagaa
atgcaggtaa gttgtacact ctggatgttg gtttttgtcg ggggccagct
46860gctactgatc ctttatgtct cagctcagat gtcatttcaa aagtctgctc
tgccctctcc 46920aaattgcagt cgaccttgcc ctgtttatgt ttccctcata
gcactaatcc atgtcagaaa 46980ttgtcacgta cagtctatct gtgtgcttgt
ttattttcta tcccaccctt ccgcaagaga 47040cttatgggat gtgtgcccca
ggacagcagg ggtcttactg tcttatgctc tgttgcagcc 47100cagcagcgat
aacagtgtct gcacatagta cttgcttaaa agatacttgc caaattgttg
47160aaggttgagg taccaatttc attattgctg actataggag ttatagcaaa
atatccattt 47220gtctgttaca tgagttaaaa atatggttgt tgcactgtga
atagtttggt ttagtcaaaa 47280cagttgtatc ttaacggatt gagaaacaaa
agcaggacca cttttcatca gctccctcct 47340tctccttaac cagcaataca
tgctgatgct gatatcccat agaccctcag ctccatcctg 47400agtcactggg
aatgtggtct aaaccctcac tattaatatg aactgagttt caataagaat
47460cttatatggg tcgggcatag tggctcatac ctttgatccc agcacttcag
gaggccaagg 47520caggtggatt gcttgaccca gactaggcaa catggtgaaa
cgccgcctct acaaaaaata 47580caaaacttag ccaggcatgg tggtgcgtgc
ctgtggtcac agccactcga gaggctgagg 47640tgggaggatc acttgagcct
gggaggtgga ggtcgtgttg agccaagatc gcaccactgc 47700actccagcct
gggcaacaga gtgagacctg tctcaaaaaa accaaaatcc agaaaagaac
47760ttatatggct gcagaggtat aatcactaag gaaatttcct tttgtataat
cttttttctt 47820ttactatcat ttaaaaaaat gtgttatatt tctgaagcaa
cacatccagg ttctgcacat 47880agcagccaaa gtgaccttaa agaatataac
tgggtcttgt cattccctta tttaaactct 47940tgtacccatt tcccagtgcc
gtttagatag agattccaga ctcgtcaatg gctctgtcac 48000ctcagacacc
ctgcattgac tcattagtct gattagagtc aggtttttct tcctcctgat
48060ggtttttttt tcccccttag ttctcagcgg aacagtcact tccttaggga
ggtttcccca 48120gccaccctct gaggccgtgc ttgttgccag actctgccac
tagagggcag ggctgcacca 48180ctcctggcac ctcgcacccg gcctgccctg
tcactctgtg tgttgggtga attcctgtga 48240tctgtgactc actgctctgt
gtcctacaca ttcggctttt cttctctccc cacaacccca 48300ttttataatt
ctcctttttc aggaaagctt tattcccatt taaaaatttt tgtttttaaa
48360atggtatttt cttacactta ttttctaatt aaaaatgagt gttttaagaa
gtattatgat 48420ttactgcaaa taatttttaa acccagcctt ttagatcctc
tgtgatcata agagaaatga 48480aggatgtctc ccaacacttg agcttcatcc
acatttcatc ctcctgttct ttcagctgag 48540ttttccccat cccattaggg
actgttggaa tataaaactg gcttttccct aacagggaat 48600gaattgcttc
tgtttctcct gaaggagagc tggaagaatg acttgcgttc ttttgcatac
48660acaggcctta cctggtgaac cttctgccgt gcctgactcg aacaagcaag
agacccgaag 48720aatcagtcca ggagaccttg gctgcagctg ttcccaaaat
tatggcttct tttggcaatt 48780ttgcaaatga caatgaaatt aaggtatgat
tgttgcctca ggtcacaaac atgcgagtga 48840tgctgtgagt gagtctgtgg
agggtgaggg cttctgaaca gggagtcctg tgggagtgct 48900tcttggggta
tgttgtatgt cgtaatttag actaccatca tttgtgttat ttttgaggca
48960cctaaggact tctttccact tctcatttct tactgtgggg tgaagagttg
aattgggaga 49020tggtttctag atgcaaattg aaaaggcatt tttccagagc
agatttgttt tcggcgtact 49080agagtgactc tttaacctag ctgcgggaag
atgactgtgc caagactgca ggtaggagaa 49140agctcactga cgaggccttg
tgggtctgaa cgtcctgcag ctatcagagc ctgttggctt 49200cctgttgtgc
attccaacaa atcatcttca aacccacttt agtgttttgt ttataatgtc
49260cagaaatagt gaccctgtca catgctctac agattacagg attcttagcc
tcttcctttt 49320tggtaggtca gtcctgggtt tgagcccaag tgaccctcct
gggaggtgat gatacacact 49380gggtagagtg gaatcagatg gacttggatt
agaattctgt cctctttact agttattttc 49440ctctaggcaa actgcccaac
agctctaagc tatttccttc gtattctgaa aaataagcct 49500taatgggacc
catatagggc aactctgaga gtaaaataaa ggaatatgtg ttagagtgta
49560gcatagtcac ccacgggaag ggcttagatg ttagctgcta ctgctcttat
tagctgaatg 49620atttggaata aactgttagc ctctctcatg ttttttctct
tgagcttcga agttttcttg 49680ttaatactaa ggagatattc aaactagtca
tggggttttg gaatgacgaa gggagatgat 49740gaatctaaag aatttagtgt
aatatttctt catgctcagt aaatggtagt ttctgctgct 49800gttattttta
ttaccatctc tttggaatgg gagtaggtgc tcctttgtgg tcagaggctg
49860tgagagctcc acagcgccag tttgcccatc tgtacactgg ggtctgttga
aggcagtccc 49920ctctgtgata tctctggctg tcagagctca gatgatagat
ggtatttttg tactcttagt 49980tctcatcatt ttcatgattt cgatcaccat
ttgagtatga tgatgctaac actttgttga 50040acgtagaatc cgttaattac
ttccttcctg aacctttggc attaaaaaaa atctattctg 50100ctacctctct
gctcatttat ggttattcaa atttattatc aagagcctgg tacagtggct
50160tgtgcctata attgtagcta cttgggaggc tgaggtagga ggattgcttg
aggccaggag 50220tttgagacca gcctgggcaa gatagtgaga ccctatctct
aaaaaaactg aaaaaaaatt 50280agctggacat gatggcatgt gcctgtggtc
ctagctactc aggaggctga gacaggaggc 50340tcggttgagc ccaggagttg
gagttcgagg ctacactgag ctgtgattgt gccaccacac 50400tccagcatgg
gtggtaaaac aagatgccat ttcttaaaaa aaaaaaatat atatatatat
50460attatcaatg aaattcagta gtaccaacag gattataaac aaagatagta
gttcccttcc 50520tactttttct cttaatcctt gtgtctcaca ggcaaacata
actcttagta tttcttccaa 50580tatttacttt catgtttctt tctttctttc
tttttttttc tttgagatgg agttttgctc 50640ttgttgccaa ggctggagtg
caatgacgca atcttggctc accacaacct ctgtctcccg 50700ggttcaagcg
attctcctgc ctcagcctcc tagtagctgg gattacaggc atgcatcacc
50760acgctcggct aattttgtac ttttagtaga gatggggttt ctccgggttg
gtcaggctgg 50820tctcgaactc ctgacctcag gtgatcctcc cacctcagcc
tcccaaagtg ctgggattac 50880aggcgtgagc cactgcgccc agcaacttcc
acatttctaa ataacatgct tctactgcta 50940tttttttttt caattttaga
cattttttta ctttcactat agttctatca gaattcagtg 51000tgtacgttat
tatgcctaag taaatagtca tggttgctta cgtattatat ttctttgatt
51060gtgtttctta tttgatgaga aagctgtgtt ttttgctctg ggttgaaact
ggagagagga 51120cctggggagg aggaggagga cagatgaagt tggtgactgt
accttcatgg ccatagctgg 51180gttctcagca cccggggatc tgctgatcac
ctactcatag gccaggcccc tatcgaagtt 51240ctaggtgacc cagtgctggg
gacggggggg ccacctgcaa ggtctaatca tggaggtggg 51300ggctacagtg
ttggcttgtg ctggggccag catccttagg aaggcatctt ggaggtggag
51360gagacagccg cccacttctt gattggggcc ttcagcagca ccagcttctt
gggcaggctg 51420gtgctggctt tcatcaccat gtcgtgttca atcttcttcc
agatcctgac ttctaggttc 51480agctttcctc agaccctggt tcctttcaga
ggccattgct gctgccttgc tctttgctgg 51540cttgtgcctt gattatatgt
ctttgtacaa ctttttgttt tcctggagtt aatcttcaca 51600tctgttttct
tggagttaat cgttacctct atatcgcttg cttattattc tttggccttt
51660ttgtcttctc acaccttcca acttctttgt aatatgtgtt tagtacaatt
tttcatgaca 51720ggtagtttac tgaatcagtt tttccccagt gtggtcatcc
aacttgagtt atccagctct 51780ctgccccagt ctgggcaggt tgatcttcag
gtctgtagta cacttgtatc ctaggacttc 51840tctttgccat tagcctggaa
tttcctttgc agttctcccg ttggatgccc agttcctaga 51900tgccatatgt
ttttctatcg tctagtagct tcctgagaga agatgaatgg gagggaaatt
51960gtatgaggtt ttgcattcat aaaaatgcca ttttttttcc tgtacacttg
gctgggtatg 52020gtgttctggg gtagaaatca ttttccctca gaaatgcaaa
gtctttgccc tgttgtctta 52080aaatctccaa cgtgacccga ttccttaacc
tatgaatgta cttttctttg gaagctttcc 52140atttttgggg aggtgaagtg
ctaggtactt agtaggcctt ttaatttgga aacttacatc 52200ccttcagttc
tgggaaaatt ttcttaacat ttctctgaga agttcttgcc ttttattttc
52260tgtgttctct cctgaaattg gttagttgga tgttggtcct cctagattga
ctcacatctt 52320acctttttct tttctttttc tggtactttt tagatatcca
tctcaaactc ttctattcat 52380tgttatgttt ttaacttctt tcttttcttt
gtctcttgat ggggtcttgc cctgttgccc 52440aggttgtggt gcagtggtgc
gatcatagct cactgcagcc tcaaattcct gggctcaagc 52500agctgttctg
cctcaccctc ccaagtagtt gggactacag gtatgcacca ccacgtccag
52560ctattttctt tacttttttt tttttttttt tgagatggag tcctactctg
tcgcccaggc 52620tagagtgcgg tggtgggatt ttggctcact taagcctctg
cctcccaggt tcaagcagtt 52680ctcctgcctc agcctctcaa gtagctggga
ttacaggtgt gcaccaccat gcccggctaa 52740tttttgtatt tttagtagag
ccagagtttc accatgttgg ccaggctggt ctcgaacgcc 52800tgacctcagg
tgatccgcct gccttggcct ccgaaagtgc cgggattaca ggcgtgagcc
52860catcattaga tctttaaata ccagtatcta taagtctttt cctcttgagt
cagctagtat 52920ccctggaagg aaattactca ttttcctgct tggaggctat
aagcttggct atgtttatcc 52980tgcaaccggg gactggaagg gaggggactg
acagtgttgc tggtcagggt gccctcttac 53040tttttgtttt ctgtgtgcat
ctcacgtctg tcctcagcct atgtaaacac ctcttgagat 53100tatccctctc
aatctttgcc ggaggtgggg gaggggctgc ttcctgggct gccttggatt
53160ggagggaaga cctcaggtga gtgggtggga atttgcccaa ggagccatga
gaccagccac 53220tatttcaccc tctccatccc tccactttca gatgtatgtg
gcgcctccaa agcccgagct 53280cttcttggcg tctgtggctt caataagctt
gctttttgct ggtatccctc ctaccctccc 53340ctgtccccag caaagcttgc
atttgaactt cttcctacgg gctaacaaat cagtcagtta 53400tgtagctctt
gttacttttt agcttccgaa gttttgttga cacccgtagt ctgctaatgt
53460ccctgttctg ttctttctgt tcgtgtaaat atatgcttta tacaacttct
ttacatgatt 53520tttgtggggt ttctgggtag cagagcttca caagttcaat
ccagcgtgtt ggattagaaa 53580tctcccaccc tctggtttat tcttattctc
aaaattacct gccaaacact gatactccct 53640tgtttttcct tttcctgaca
ggaaatgtac ataccataca ggacagaaat cattagtgta 53700tcccttggtg
aataaccaca aagtgaactt aacccttgta accgccaccc aggtcaagac
53760agaatattac caagcactca gaagcctctc ccctattccc ccgtcactgc
tcctgccttc 53820ctccccaagg tcatgactgc tggcttctaa ttccagagtc
tgtttttaaa ttctgtgtac 53880atagaccatg gattaagtgt tctttttgtc
tggtttattt tggtcgacat taagttcatg 53940agagtcttct atattatcgt
gtgtattagt attcctgtag ttttaggagc ttcatagcat 54000tccattgtag
ggatatacca cagtttattc attgtattat cactgggttg tttctagttc
54060ttggctattg cgagcagtgc tactgtgacc actcttaggt gtgtcttttg
gagtacatgt 54120gcaggtttcc atcttgcaca gctagaggtg gagttgttgg
gtgatagggt gtgtgcatct 54180cagctgcagt agaaactgcc aaatagcttt
ccttgagtgc ttgtaccagc tcaccctttt 54240gccactgtgt atggggattc
caggagctct ggtcctcgct agcacttgga attgctgatg 54300cttttactct
tagccttcct gatgggtgtt ttctggaatc acattatgat tttaatttcc
54360attccttaaa gtacccttgg ctctgaagtt taatgattca tgcatctctt
cccttttgaa 54420gtactcttac aggtatgttg tgcatgtgtt gaaaagtggc
actatctatt ctaaaataca 54480gtatgcctcc tctgtgtttg aacagttgta
gcgtggcctt ggggcctcct gttagctggc 54540ttggagaagg gattcttggg
attgtagaga ttagacctga ggaggcccct tggagctctc 54600tgactaaatt
ttattcttta ttattccaaa ctatttaagc tcaccgtgtg ctgactcatc
54660ataataatga gtagctctca ttgtgcttgt ctatttggac tcatacaatg
attttttttt 54720tttctttgag acagagtctt gctctgttgc ctaggctgga
gtgcagtggc acaatctcgg 54780ctcactgcag cctccacctc ccaggttcaa
gtgattcttg tgcctcagct tctcaagtag 54840ctgagactgc aggtgcgtac
caccatgcct ggctaatgtt tgtattttta gtagagacgg 54900ggtttcacca
tgttggccag gttggtctca aactcctgac ctcaagtgat ctgccttctt
54960cagcctccca aagtgctggg attacaggtg tgagccactg agcttggcca
aagtagtttt 55020ttaagatgtt agtatctttt cttgcagcta aaaaagtttg
tcagagatga ttctactttg 55080ttctccaggt gttttctcag ggagaaattg
gaggcagtaa gccactgggg gagtcctgtg 55140gctggggggt ggggtagtcc
tgtggctcct tgtcagggag tcctgtggct ggcaaggaga 55200gaagtcctgt
ggctgggttg ggagggagtc ctgtggctgg ggtctcatcc tgtgcctaac
55260agtgtccaga ggtgccgaga ccagctcagt cggggagacc ctaacccagc
agcgctagag 55320gaattaaaga cacacacaca gaaatataga ggtgtgaagt
gggaaatcag gggtctcaca 55380gcctttagag ctgagagccc tgaacagaga
tttacccaca tatttattaa tagcaaacca 55440gtcattagca ttgtttctat
agatgttaaa ttaactaaaa gtatccctta tgggaaacga 55500ggggatgggc
cgaattaaaa gaagaggttg ggctagttaa ccgcagcagg agcatgtcct
55560taaggcacag atcgctcatg ctattgtttg tggcttaaga atgcctttaa
gcggttttcc 55620accctgggtg ggccaggtgt tccttgccct cattcctgtc
aacccacaac cttccagtgt 55680gggcattagg gccattatga acatgttaca
gtgcttcaga gattttgttt atggccagtt 55740ttggggccag tttatggcca
gattttgggg ggcctgctcc caatacagag gtctcgtgta 55800aattccctgg
gaggcgataa gcctctgaga aacagactat gctaaccacg ccatgaaaga
55860gaaacttatt tataaatcag atgccagtta ctagtttact gcttatttgc
ccaggcgtag 55920ctctgacaga gtccccgact catagtgctt gctcagtgca
tgctgaacaa tgattggaat 55980caagtcatgg ctcagagcat agttttgaat
aatgggaaat ggatgttctt aagtaacata 56040gtcaccaaga taatgcgact
agctgggtca ccccttttca attttaggat atttttatca 56100agatttaaat
ggccatcatt agagttatag cactttctcc tttggattgt cctagaggcc
56160catgagaaag tattccctaa tttcttagga gaacagtttg tgggtagtat
gcggtcatgt 56220ccagttaaat tgcagatatt tccgatcgaa gatgttccag
tcctgagaac ttcgtgacat 56280tagcaggact tctacaagcc atctcttagg
gtggggcatt tactgcagtt ggctagtact 56340cttttctcct taactttgtc
atttgttgat ttttttttaa ctgtccccaa atactgtggg 56400cagagtgtat
ctagaattga ggcctccacc attgcggaga ggacatggat gctgagcagt
56460cccctgagtg aaggttataa agaagcaaat agactacaca tgtctgtaaa
ctgctcttga 56520gtgtcccaaa tttggggtac ttcagttcag ctgtaggaaa
agcctcaaac tgtttatact 56580ttgcaagaat tggaaacttc taattcacgt
taagttttat gtaatacatg ataagcttca 56640taggagcttc atcttttatc
tacttggact tttgcttccg taggttttgt taaaggcctt 56700catagcgaac
ctgaagtcaa gctcccccac cattcggcgg acagcggctg gatcagcagt
56760gagcatctgc cagcactcaa gaaggacaca atatttctat agttggctac
taaatgtgct 56820cttaggtaag gtggaggcat atgagtggaa gagtctccag
catgtactca agatagacct 56880ttgaaataaa taaaaccaga tgatccctca
gcttctagac caggctattt ggcactggtt 56940gattgaatgt gaactgcact
ggggctgctg tgagcccgca tgggtctctg tgaccctgca 57000gatgcagccg
tgcccaggga ctgggcagtg ggtgtgggct ggtgtgagcc ctgtctgcca
57060cccagggcct ggccctctgt ctgtgtcggc catgactatg gtgagtcttg
taggcttgag 57120actgtgcctc gggttcctgc gggttctctg taggtcagtt
gacagtttct cctgttgttt 57180gggtaactgt ggaaacgaac actggcaagt
gctgaagcga gcatgtggac gtgcgatatg 57240aaataacgac ctggctttca
aaggcagtga ggctctctgg aaaggacctt gctgagctag 57300ggatgtgggt
gtgtagccat tcccagtggg cctcatggcg tactcgttca tgatcatgtt
57360tgtgccatct tgatctctca ggatctcttc ttttttaaca gattaagccg
ggaatctcca 57420aacagtgagt cagatgttaa gatgtcttgc ttccaccccc
acaggcttac tcgttcctgt 57480cgaggatgaa cactccactc tgctgattct
tggcgtgctg ctcaccctga ggtatttggt 57540gcccttgctg cagcagcagg
tcaaggacac aagcctgaaa ggcagcttcg gagtgacaag 57600gaaagaaatg
gaagtctctc cttctgcaga gcagcttgtc caggtaggag cacagggttt
57660actctaggcc ctgcatgtga atgactgaca ttcaaagaac cgattaattt
ggaagagaag 57720cggcagaacc gagagttaga ggtgtggact ctggagctgc
gctgctcgtt tccaacccta 57780ggtgctgacc tctagctgtc ttccctctgt
atgtccctgt caccgtgagt caaatgcggg 57840tgatgcctcc tcaggtgccg
tgttacctaa gcctctcaga gaccactgct accctgtttc 57900taaaaccaga
ggtcacgata tgtgttcatc cacccagtaa atactgattg agcacccact
57960gtgtgctagg ctctgggata ggggctgggt atacaatggt gagtatttca
gctgcagctt 58020ctgccccgtg gaggctgtgg cctagcacac tggtctaggc
acggtggtat atgctcactc 58080aaggagatag ggacgtggtc gtttggggtg
tcggaacaaa atgtcggaac ttctctttcc 58140aatgcagaga aaccttgcag
taattctaat gtactgtgat tggcagttga cttcagttct 58200ttgtagcacg
cttactcagg ttatttcact aactatgtaa ccatgcagcc tcattttaag
58260caattggatt ttttgaactt tacttaaaat gttatgtcag ggtttttatt
gtgcttaatg 58320tgtgccattt agctaagttt tgtaggatac gaaattgtaa
gtggcttaaa atgattctta 58380atagaatcat gaattgaaga taatgctaat
aatttaagca ctgagttagg tagtgtttgt 58440aaaatgctta gaatgcttcc
tggcacatgt taaggccatg taagtgctgc gtgttgataa 58500acagctgagc
aaaagtggac tcttaagaaa gtattggggc tgagagttct gttccaacca
58560gctgcccttt ggttattttt cagaataaaa gcagagtctc atgggatatg
acatttatat 58620ttccttcaca aaaaacactg ctgagtgttt tgttgagtaa
aaagggtgta gccatggtaa 58680taatacattt aaaatatagt ttatttcatc
tttaccttgc cttgtttttt ttttaagcta 58740gctttttatt gagaattcca
cacatacaaa agtatcaact catgaccagt tatatttcat 58800ttataatcct
acttctccct ttttttatta tttgaaagca aaccccaatt atcctcttat
58860ttcatctata agtatttcag tatctctata gatgaggact cttctttatt
tttaaaactt 58920tatttttaaa atgatggtca gatgcagtgt tcatgcctgt
aatcccagaa ctttgggagg 58980ccaagctggg cggatcactt gaacctggga
gtttgagacc agcccgggaa acatggcgaa 59040accccatgtc ttaaagaaaa
aaatcagcca agtgtggtga tgcatgcctg tagtcccagc 59100tacttgggag
gctgagatgg gagggtcaca tgagcctgga agatcaaggc tgcagtgatc
59160catgattgta ccactgcact ccatcctggg tgatggagca agattctgtc
tcaaaaaaac 59220aaaactgcaa aacaacgtca caaaacagtg ccattgttag
acctgaaaat attaaacatt 59280tcctacatca aatacccacc aactcattat
caatttttct ctctactctt ttggaatcag 59340catctaaata aaattggtcg
ataaggattg taaatctctt tgatgaactg gttcccctcc 59400atcccagttt
ttttccctta gagttcattt attgagaaac cagattgttt gtcttctaag
59460ttttcctgtg gtctgatata ctgcttccat ctccactgtg taaattaaca
cctttttctc 59520ttctctgtat ttcctgtaaa tcaataattg gaggaaaagc
cttgtcagat ttagtgtata 59580ttttatatct gagtccagta tttcttatat
aatattttaa gataagtgta ctcttttaaa 59640aagtattgaa actatatgct
caattttttt taactgatgc ttttaagaag gctgcttgat 59700cataaaagtt
tagagatcat tggtctgatg ggaaaagcaa ataattacta aaccgtttag
59760caaggttgag gtgcacatgg tggggcctgg agaagttcag tcatgagccg
tcacttatgg 59820gcacgtggaa tctgacccgg cacagagttg ggagaagaca
ggagctttat agacagaaaa 59880tgtggtcttt gctaagtccc aggagtgaaa
gggtgagaca gtgctcacag cacacgagtg 59940tgggtgcgta gacagagcaa
gggtgggtcc tgaaaaggcc tgcaggcttt ctcatagatt 60000agcaagagtg
ctggttacgg aggtttctaa catttgtgaa cagatcgaaa ctgtgttaaa
60060ttgggattgc agtaatcctg gaaggacagg gatagagggt gaaggggaaa
aaagggtatg 60120gatgtgagac ttaattgctg attttcttaa gacctttctc
caaagtaaat aaatgatgtg 60180gcacattttt gaactggcaa attctaaact
ctagatatga
ttatctctat aacatatctt 60240actccatctt cttttgacta aaaactgttc
ttaattaaat taccatgaga cgttcaattc 60300agcaaatgta gtttggctaa
ccatatttaa ttagaattta atataatcct aggcctggcc 60360aaactattaa
gcaagtgtgg gcaaaatatt gataatttta gatatgcagg aacttagttt
60420gctttccatg tgtgcttttc gaaaaaggaa taaattgaaa aatagaggaa
gccctgaaat 60480ccaagaagca aactctctca cctaggcatg cagtaaaagc
aattctagga tgattgctgt 60540ttggcgcgta gttcgtatta gaaaccattc
ttcttgaata aatagtatgt ttaagaagct 60600gggcagaggg aaggcatatg
catatattat caacaaggag ggagaaaaag gcaattagta 60660accatccata
ggagggtcag caagatttat aaaggaaatt tgtgatccaa gtatgaagca
60720aaataaggtg cagaataaat tttaagcaag taatagatta gagtaagaga
acccatttga 60780ccattaacct tgggacattc tctttcaaat gacatggagt
agtactgaaa tctttctttc 60840tttctgagtc taggttattg tgactggact
cagaaagaaa tatttcatta ttgcagtgaa 60900taacatttgt gaacattatt
gttcataaat tatgcagtga ataacattta tgaacacgtg 60960atgtgtaaga
tacatactgt ttatttttag ttaagttttt tggctcaact tctaggcaga
61020gaacattaaa tgtaaatagt gttacctagg agcatgtaaa tggaaatctc
catagtatga 61080aagcagtgct gttgctaaca gaatttagga gggggcagat
gaggtgaagg aaatgtgggt 61140gctgatttcc ttattacatt gagaggagcc
aggagattct ttgttcaaaa tggatggctt 61200aagaagtcaa agtataagct
gattacgtag agcaggtacc caaaaatgtt ttgtgtaagg 61260ggccagatag
taaatatttt cagtcttgca ggccatccca agtctgtggc agctactcaa
61320cactaccttt gtagcatgaa agcagccaca ggcagcccat aaatgtggct
ctgttccggt 61380gaaactttag gtacaaaagc aggtgcaggc cagacctgac
ctgtgcactg tggtttgctg 61440acctgggatt caggggtata gaagttacca
tcagaagagc taaaagtgag actttttact 61500ttatactctt ctacactgtc
tgattttgaa aaaaagaaac atgtatttta taatattaaa 61560gatagggttg
gcaaatagca aataaaaata cagaatacca gtgaaatttg aacttcagat
61620acattatgag taattttatg gtgtaagtat attccaaatc atgtgggaca
tacttacact 61680acaaaattat ttgttgtttg tttacagttt aaatttgagt
gccttgtatt ttatctggca 61740actgtaatta aagggaaaaa gaataaattc
attatgttca tataatgtga tatagcaggg 61800gtccccaacc cccaggctgc
agagtggtac tggtccatgg gtccccaacc cccaggctgc 61860agagcggtat
tggtccatgg cctgttagga accaggctgc ccagcaggaa gtgagcagca
61920ggtgagctgg cattcccacc tgagcaccgc ctcctgtcag atcagtggca
gcattagatt 61980cccataggag tgcaaaccct attgtgaact gcacatgtga
ggggtctagg ttgtgcgctc 62040cttatgagaa tctaatgcct gatgatctga
ggtggaacag tctcgtcttg aaaccatccc 62100ctggccctgt ggaaaaattg
tctcccatga aaccagtctc tggtgccaga aaggttgggt 62160agcactgtga
tatagtatta aaagtgctaa taaatatggc atactgcctt taaaatgtct
62220ggtagctctt tctcagtggc actcataata gtgttttttg atttttaaat
gtgtgtcaag 62280ctgactctcc cctccgtgta tgctgggctt tattttccct
ttcctagtca ccagttttgg 62340gaaatagaga tcttcattct catgctgctc
ctctagtgca agtgctccat ttatttttaa 62400ggaattaata taacaaaaaa
tcatgggaat ttagaaaaca acatggaagc taatgatcac 62460attggtggaa
gtgataggga aatatttagg gggagaagtt aaggtataaa ctttgtcaat
62520gaagtcctat taaaaacaac aaaaaagtga agcttaggat gcattttata
aactctgacc 62580agaacacctg tgtttctctg tttctaggtt tatgaactga
cgttacatca tacacagcac 62640caagaccaca atgttgtgac cggagccctg
gagctgttgc agcagctctt cagaacgcct 62700ccacccgagc ttctgcaaac
cctgaccgca gtcgggggca ttgggcagct caccgctgct 62760aaggaggagt
ctggtggccg aagccgtagt gggagtattg tggaacttat aggcaagtta
62820ttagcaaggt ctactcttac aattaacttt gcagtaatac tagttacact
ctattgatta 62880tgggcctgcc ctgtgctaag cagtctgcat tccatcttcc
ttgccaaaac ttataataca 62940aatttcatct ttattttata aataggggag
ttgggctggg tgtggtggct cacgcctgta 63000atttcagcac tttggaagga
tcgcttcagc ccaggagttt gagacaacct ggccaagtga 63060gaccctgtct
ctacaaaaaa aaaaaaaaaa aaaaaattag ctgggcatgg tggcacatgc
63120ctgtagtccc agctgctttg gaggctgagg tggtaggatt gcttaagccc
aagaggttga 63180ggctgcagtg aatcttgatg gcagctgcac tgagcctggt
gacagagcaa gatgctgtct 63240caaaataaat ttaaaaataa aataagagaa
ttaaagttta gcaggttggg tggcaaaatg 63300aggccacaca tttaaagccc
ctcctcctga ttcttttctc tgccttggct gcctcctgtg 63360gcattttagg
tgctgagaaa tgaaaacagt agggaaaata gttccaggat cctcatgtta
63420atttgccaga aatggcatct tcaagtcgtc agagggatct gagagttcct
tcctggcctg 63480acttgagaaa atccgtctgt ccccagctct gcgtctgcct
ccactgccca gtcacctcct 63540ctccatgctc ttggggctgg gccctacccc
accatgcagt gctgccctgg agcagtgagc 63600ttggtgggtc ctgtctggca
tgagagctgc ctttgggagc tggatcccag cctctaccac 63660tgggtctggt
gcctagcagg ctatggataa acttctgctg actccggcct ctcctaagcc
63720actgcaacgt ggtcggtgta gtgcacagtg tgtgtgcagc gtggccttac
tcacagcctc 63780cacattagag agaatctgac tgaagtctta ctgctgcctc
gtgtgaacat aaatgtttgc 63840cagaaccatg agcaggaaat gttaatctgc
cttgtttcct gtcctttaca cggaagaatt 63900tttttctgta tggaatgcgt
gccttacaaa taatgagtgg aaatacccat cgctaatgaa 63960aagttatact
tgactgttag tcagctaaat aatctgagat ttctaatact tttaatttgg
64020cttttacaat gcaatttatc ttagcttttt tgatttctta ggtcatatct
ttagaactat 64080atatttgaat gttaatgtaa ttttcatatt gaaattaaaa
tgttgaactg cgatgttaag 64140tgtttcctgt ggaaaaacgt tcacattttc
tctagtttta aagttgaatc aagctgtttg 64200aagattttca catttcttct
agattttatc agcttgttac tttatctgtc actttctgtg 64260atttgcagct
ggagggggtt cctcatgcag ccctgtcctt tcaagaaaac aaaaaggtga
64320ttatttcaga aatcagagtc ttgtgttgaa tcttactgat tttcttgtat
ttctgtaatg 64380taatgtatct tgtatttctt gtaatactgt attggactct
gtgtatatct cttctcagat 64440gagtgattat atgtgtgaat gttgctggaa
tctgataacc aggcctgaat agttttgtag 64500ggtggctttt aaaaattact
ttcatatcag aattgctttg tcataaattt tgaacgcatc 64560ataaatttct
aatgttcggg gtcagcagac tttttttgta aagggacaga gtgtaaacat
64620cttagcttta tgggccatat ggtctctttt gcaacattca gctctgccct
gtgacaggaa 64680tgcagttgta aagacatgag ctactggcca gctatgttcc
agtagaactt tacttacaga 64740aacagacagg ctgtagtttg ccaatacctg
ccttagggaa tgtgttgtta tattttgtga 64800gttaccttct cagtaaattt
tatttagtat tagtcaggaa tattattaag tagcttcttt 64860tccagcctgg
tcaacatagt gagacccggt ctctaccaaa acaaaacaaa acaaaaaaac
64920agccacgcat gtggcatgtg cctgtagcct cagctgctgc tcagggggct
gaggcaagag 64980gattgtttga gcccaggagt ttgaggtcac agtgagctgt
agtcatgcca ctgcactcca 65040gcctaggcaa cagaatgaga ccttgtgtct
taaaaaaaaa aagtttcctt tgttgggtta 65100ttttaatttg gacctggtta
tcatttttca gccatattta actttgtaca tatcagaatg 65160ttctgataaa
acttaacttt tattaaagtg tttgtgatat aatctgctag ttttggtaca
65220cattatcttt tgcaatgcca gttattttct tttccagtgt gggtttgcat
aggaaaagaa 65280ttgctgtcac tttctatttt gaaatcttaa aagactgatc
cttttttgtg tcatgatttg 65340agtatttaat tgagagccta atgcctaata
ttatttgcag tattaaatgg gatcttaaca 65400ggaatagcat tctagccttc
attgaattaa gtaaacattt cttaagagaa cttggaatct 65460ataatatttg
cgtcatcata gtatgagata cttaatcaag tttgagattt tagtgaaaca
65520ttgtttagaa gccaaaagga ttctaggaaa aattaatgtc tatattcttg
aattaggaga 65580gattttggga cgtgtgacta agttacgctg acacttgttt
gtttcttagt cgctttttcc 65640agtggcggtg agaacgaaga tgactgattc
acattgctca gatgagttta tcctcttctg 65700gctgggacat gggatatatc
ctgtctcttt taagcctttt tggtattttt cccccattga 65760gagctgtgtc
ttcaaactct tctgttatag ctggaaaatc ctttttaagt gaaatctgcc
65820caaattataa gacagatgaa ggtagagttg tgttggatat aggattaggg
tgaaagtagt 65880gggggtgtcc tggagcctct cttctggtgg cagcctagct
cttgtgcctt tgaggaaatt 65940accctgggga cggctctgtg gaacatattt
gcaaaccact gatttggaag atagagatgg 66000cttttgttaa gatctgaatt
cacctttttg gcattttatt tgatttctca aggtaaagaa 66060cttattttgt
aataaagttt cctattattt agtagatagg ccaagttgct gtgttaattc
66120catgtagatt ttgggtttcc tttgctcatt ttttcactct taatctcaca
tcattgtaag 66180tttatggaag ttatcatact tctgactttt tctttgaaga
gcagaaatta gaaattccca 66240ataattattt tgatagtgtc atttaatgac
actcacatgt gatgtagcca caaagattta 66300atgagttcag ttttaaatca
tattaagact gttggtttca tttgttctca ttaatgtaat 66360tctgaagatg
aacaataaaa tgtattttta gaactttcaa atgaaatatt atttcatcct
66420tccagatcat ataatgctta agttctgatt gttaatcata aagtctagaa
aattaaaaga 66480taataaaatg aaagtgactt ttaggtatta gagttttatt
ataaattctg gtgtgtcatt 66540ggagctatga catgaatatt tcaaaggcca
atagcattgg atctttacag ttataactta 66600ccatttttaa gtttaagtag
taatatagat tatttaataa tcaaaatcaa taaatattaa 66660ttattaaaat
gttttgtggt atagtttgag aatcattgct tttaactttt tccatatagg
66720tttattgact ttaatagcat tctaaacata acatctctac attctttgtg
tttaatactg 66780tggaggtata aaaatactta tatatgatga taaactatat
tagagtaaat taaatattct 66840tatgagtttc attttagagt gcatttactt
aattttgaag tccttatttt tagcaaacta 66900aaaggaatgt tggtacatta
tttactaggc aaagtgctct taggagaaga agaagccttg 66960gaggatgact
ctgaatcgag atcggatgtc agcagctctg ccttaacagg tagttctcac
67020tagttagccg ctggtgtgga ccttcactgt ctgccttcca ccccttgccc
ttcctgctcg 67080tccccctgca cctggtggac agcacgactg ggggcagcag
tggagccagg ttgcttaaat 67140ggggcatatt cgggcttctt ttataatact
tactctgaag cttgtgtgtc tgtggtgttt 67200gcatcatata tttgttgttt
tccatggttt aggctgtttt aaaattaggt ttatggcttg 67260agcatagggc
tttgtgagta ggggatggca ggtcgaaaca tctcatgagt tggatgggtt
67320atgctggggg ttgggaaatg ggatgaaaaa ttatgggatg aaaaattgcc
tatggatagt 67380ttaacttgaa agaatctgcc tttgtttaca gatagttatc
ttttttcttt tttgagatag 67440agtctcacac tgtcacccag tgcagatacc
cagtgtcact ggagtgcagt ggtgtgctct 67500tggtgcactg cagcctccgc
cttctgggtt ccagcgattc tcctgcctca gcctcccaag 67560tagctgggac
tacaggtgcc cgccaccacg cttggctaat ttttgtattt ttttgtggag
67620acgggttttt gccatgttgg tcaggctggt cttgaactcc tgacctcaag
tgatctgcct 67680gcctcagcct cccacagtgc cgggattaca ggagtgagcc
actgtgcccg gccagttaca 67740gatacttatc taatgaaatt ctctgtgtac
tttataaaag atgaggatta actgaaggta 67800ctaataactg gattatatga
gggtggtttt ggttgtataa tcctatctaa aagaatattt 67860tagctataac
tgaaagtaag acttaaatat ttagagagga aaatctgaat aattctagta
67920gtaattattt atttacaaaa taaaaataga tttttttttg attacacaaa
ttaaacaaca 67980ataaaacatc acagcaatcc ggatactata aagctcacat
gcttaccgac ccaactgccc 68040caggagtgac cactgccaac agcttcatgt
cgaccttttt gccataattt ttatatagcc 68100ttttttgttt ttaaatggta
atttagaaag tcaactagga aaatgtgtta caggtttatc 68160ttccaggaga
ataggactgg agtcgagatc ttgaatgtgg cttggaagaa ggcaagccca
68220ccccagagag atgagttgac agttgtttct gaccactgct tgcttagagg
gcctgcgtgt 68280ctgtgaccgc ctagctttgc gcccctgact aggctgcccc
ttaattacaa atgtctttat 68340atattgctcc agctaaggct tggagtagtc
ggttaagaac ttgaacttcg gtttttgcag 68400tgaaacagca tttgagaata
tcaccttctg ataagcctta ttttataagg tgggtactgt 68460agtgggaggc
agtgtgagag atgcttgaag gatgcactgc tgtcctgcat ttcagcatct
68520tcaggatgct gtgcagctga aacatttgat aacggtggaa ctgttcgtta
ttttgcaagc 68580ctgtgattcc ctattgaatg ttttctctcg ccatttgaca
aatgagtgtt tctctgtctt 68640cagcctcagt gaaggatgag atcagtggag
agctggctgc ttcttcaggg gtttccactc 68700cagggtcagc aggtcatgac
atcatcacag aacagccacg gtcacagcac acactgcagg 68760cggactcagt
ggatctggcc agctgtgact tgacaagctc tgccactgat ggggatgagg
68820aggatatctt gagccacagc tccagccagg tcagcgccgt cccatctgac
cctgccatgg 68880acctgaatga tgggacccag gcctcgtcgc ccatcagcga
cagctcccag accaccaccg 68940aagggcctga ttcagctgtt accccttcag
acagttctga aattgtaagt gggcagaggg 69000gcctgacatc ttttttttta
ttttttattt gagacagagt ctcactccat agtgcagtgg 69060aggccgggca
caggggctca tgcctgtaat cccagcactt tgggagactg aggcaggcgg
69120atcacttgag gtcaggagtt cgagaccagc ctggccaaca tggtgaaacc
ctgtctctac 69180taaaaataca aaaattagtt gggcgtggtg gcacatgtct
gtagtcccag ctgttaggga 69240ggctgaggca ggagaattgc ttgagcctgg
gaggcagagg ttgcaatgag ccgagatcgt 69300gacactgcac tccagcccgg
gcaacagagc aagactccat ttcaaaaaaa ataaaaaaat 69360aaagtgcagt
ggctcgttct cagcccactg caacttctgc ctcccaggct cgagcgattc
69420tcccgcctca gcctcctgag taggtgggat tacaggtggg caccaccaca
ctcagctaat 69480gtttgtattt tcagtagaga cagggtttca ccatgttggc
caggctggtc tcaaactcct 69540gaccttagat gatccaccca ccttggcctc
ctaaagtatt gggattatag ttgtgagcca 69600ccatgcccgg ccctgccacc
tgccatcttt tgagttcttc cctggagacc tagacctgaa 69660ccctcctgct
tgttctcttg ttatctaata cccctattga cagcgcagct tagatcatta
69720atggagagct tgacctcatc tgataccttc actgaaggaa acaacttagt
gtcttttgtg 69780ttgaacactg aggtaaaaaa ttggaatagt tgattatatg
aactctgcta aaattgagtg 69840cattttacat tttttaaggc cttgttgggc
cctggttaaa taattatttt taaaaatcct 69900taaggagcct attataaaca
gatctgtggt cttaatgaaa tgtgattaat actgtgcatt 69960attttaagaa
cttttgactt ttcaaaaaac ttttacaaca tttcccattt gatagcggca
70020taggtttaag cacttctcat ctctaagtta gtggacaaaa aaccctcatg
gatagtctaa 70080taatgtttgc tacaagtcca tgttgagttt tatactccat
tttattttca gttttaaaaa 70140ctgtggttaa atatgtgtaa cataaaattt
atgttcttaa ccattttttg cgtatacagt 70200tcgctggtat taaatacatt
taaataatgt catggaatca ttgctaccac ccatctctgt 70260aaccttttga
tcatgtaaca ctgaagctct gttcccattg aactctattc ctcctttccc
70320gccaagtccc tggcaaccac gattcttctt tctgtcttct gaatttgact
actttgggtt 70380ctcatatact ttaggagtca cacagtattt gttttactta
gcataatgtc cccaaagctc 70440atgcatgttg tagcctatgt tagaacttcc
taatgtttca ggccaaatac tattccattg 70500tatggatagg ccacattttg
cttttccatt cctctgtcca tggacacttg tattgcttca 70560tgttttagcc
attgtgaatc atgctgttat gaacgtgggt gtacagatag ctcctggaga
70620ctctgctttc catttttttg gctaaatacc cagaaatgga gttgctttta
cattccaatt 70680ttaatttaaa acattcatat cattgagtgt tttacttaat
agtatagtag ttaacaaact 70740taataaaata gtattttggt aataatttgc
tggtagtcca ttgttcagtt tttttaggta 70800aattacacag gacatttcaa
gtggacatga aacatcttgt gatgtggaat catgccccaa 70860gctgatggct
aaacatatga aataccatac cctaaattta gtagatttag tctttgcaat
70920ttaggagata acctgttata ttgttaggtt tttgtcgaaa agctttgtcc
tcatatttcc 70980aacttgctgt aaaatttgtt tgtgaagaca aatatttttg
tatgggtttt ttctttttca 71040tattaaaaag aaatgtccac attggaattt
ttttggagtt tttagagcta atagagcttt 71100tcataatgta gtgggaatga
gtgatcagta agctcttagc agtttccatg cgtgcatttc 71160tgtgccttga
aataaatgac agatgagtac atttgtgttc tgtgtgtaaa atgtgctctt
71220tcctcattgc acttccatgt tggagggctt gtctcttggt gatcacactt
caaaattctc 71280acagcccccc ttgaaccgtt taggtgttag acggtaccga
caaccagtat ttgggcctgc 71340agattggaca gccccaggat gaagatgagg
aagccacagg tattcttcct gatgaagcct 71400cggaggcctt caggaactct
tccatgggta tgtggactac aggtgatgcg ctacaaagtg 71460gtttgtattc
agacctggac atcttaatta tatctttgct tccaagaaga agtcctttga
71520tactgttttc tgagttctga atagctgatg aaaatgacca attgaggaat
aatcatactt 71580tttcttgatc taaatcttat acttttgagt tatcttagca
taaatgtata attgtatttt 71640aagtggaaat ttgtcactta atcttgattt
ctctgttttt aaagcccttc aacaggcaca 71700tttattgaaa aacatgagtc
actgcaggca gccttctgac agcagtgttg ataaatttgt 71760gttgagagat
gaagctactg aaccgggtga tcaagaaaac aaggtgaggg acataggctt
71820gagacgactt ggtgtttctg agcttgtgtg aggatttaaa atcgccctgg
ctactgtcta 71880ctttattgct ttcccatccc tgggccttta aatttcccct
ttaaatacca gctcttccca 71940ggcctgttgt tttctgcctt tccaggtact
acccacagcc ttgagaattg cctgagttct 72000gcctcctttg agagtgtgcc
ccagacaaat ctattctgta ctgaatgttt ccttgtctga 72060tttcttggat
cattcatttg atggttgcgt atggcctgca acgtttcttg ttttggttct
72120actgaactgt tctaaaagtc tctcttcata ttatcttttt acatgtaaat
gtaactgtct 72180tcacttttaa ttcctcaagg acaaggaata gcgtttcaca
gttcgtccca tcaatcagaa 72240ttatagcctt tggcatctcc ctatctacca
ggcccacttc ctcttagatt tgggcttccc 72300caggctgttg cctttcccca
agtagcttct gcttgtcctg tagaagacct ttcatgcttt 72360gcttctgcag
cagccgttcc tgaatgccta gtgtcaactg ccttcttacc acgcccaccc
72420tccctgcatg ctgcatttat cccctgccac agccctgtga ccctgtgtcc
tgctgcctct 72480gacttgtctg tttctgcttg gccatggtct ctgtgaggtc
aggtgtgcat atgggcacaa 72540accagggcat ctctttatcc ccagcacctg
gcttaagtgc tgctctggaa ctatctgttg 72600aatgaactaa tgcatgaatg
tattgttgag tatgagacaa acaagtgtca ttgtctcctt 72660tctagccttg
ccgcatcaaa ggtgacattg gacagtccac tgatgatgac tctgcacctc
72720ttgtccattg tgtccgcctt ttatctgctt cgtttttgct aacaggggga
aaaaatggtg 72780agtacaaaag gggatgtgca cagttgaagg aaataactag
gtttcagagg tcagcttggt 72840ggcctgtttt tgccttgcgt gcagcagagg
aagtagaatc tgaggatgag tttggttttc 72900actagccgag gggagggagg
aaatgatggg agcaggtagg ttattgggtc tggttttgtt 72960catttgaaaa
caatctgttg tttgaggctg aaggtggctt gggtgatttc ttggcagtgc
73020tggttccgga cagggatgtg agggtcagcg tgaaggccct ggccctcagc
tgtgtgggag 73080cagctgtggc cctccacccg gaatctttct tcagcaaact
ctataaagtt cctcttgaca 73140ccacggaata ccctggtatg ttaaaagttc
acatcttatt ttctcagatt taatcattat 73200tgtaaaaact atttcagtat
tgactatttt agttttagag cagtaagtgt tttgagttca 73260tttgggatat
ttgacctgcg ttgtagctct tcagaaaaca catgaatagt gaagttcttt
73320gtttcatggg ttccctttag atgaaaccca tagaggagaa aagtagaaac
ctcagcacgt 73380aagagccaac atatatacac atcggattta aacctaaagc
acaaattgtg cctggtcgca 73440gtggcgctga gtcgcactca gccaggccag
gcattcacac tcagggtgag tgggaaccag 73500gactggctga ggcagcagtg
gacccaagtc tccatcgcgc ccatgcttac tatggagcct 73560tctcgttctc
tctttttctt tgggtgagag ggtacacttg tgtttttgaa tttatatgag
73620gtaagtgtgt aatagggttt tttctaatct tttttaagtg gaatctggaa
ttttaatcag 73680atttattatc tgacaaccta gaattataat ccagaaagtc
tgtggtattg aggacatatt 73740ggcaatatga tgaatctcta attcttaaat
cctgaaactt tttttttttt aatcacttag 73800ggttattata gtgaagtcat
ttctgaattt ggatcttctc ttcacacctc tttttctctt 73860tcctgagaat
taagcttttg tttcgagtta gaaagttgat agtagggaat tgttccatgg
73920ctgagcaatt tatctccaca gaggaacagt atgtctcaga catcttgaac
tacatcgatc 73980atggagaccc acaggttcga ggagccactg ccattctctg
tgggaccctc atctgctcca 74040tcctcagcag gtcccgcttc cacgtgggag
attggatggg caccattaga accctcacag 74100gtaacggcca gtttttcagc
tgtgtttttt ctagttatgc ttactaaggt ttaagtttag 74160atgatgatgt
ttgttgcttg ttcttctggt taggaaatac attttctttg gcggattgca
74220ttcctttgct gcggaaaaca ctgaaggatg agtcttctgt tacttgcaag
ttagcttgta 74280cagctgtgag ggtgagcata atcttctgtg gaaccatttc
ttcacttagt ggacatttta 74340tcattgctac aattaaaatt ggagcttaat
aggaaatatt tccatgcact ctaaagctgt 74400aaccagtaat acccaccatg
tatccatctc tcagctttag aaagaaaacg ttgccagtaa 74460agttaatgct
tcataaactt cagtttaagt tctaattctc agaatatttg tttgaaatag
74520acctcttcct aaaggatata tttagaaata acctatcatt aagtgtaaag
tctgttgaat 74580atgctgggca cggtgactca cacctgtaat ctgaccactt
tgggaggcca aggtggaagg 74640attgcttgag cccaggagtt caagactatg
ggcaacatag ttgaccctgt ccctacagaa 74700aattaaaaaa aaaaaaaaaa
aaagtagctg ggtatggtgg tgcatacctg tagtctcagc 74760tactcgggaa
gctgaggtgg aggggggatt gcttgagccc cagagatcaa ggctgcagta
74820aggcgtggtt acaccactgc cctctagcct gggcaacaga gtgagactgt
ctcaaaaata 74880atagtaataa taatcagttg aattaaaaaa aaaaaaaaaa
aaaccactgt gctaggccca 74940tagtatggta agagttaaag tgagccttag
ggattattta ctcaacctct gtttctgtat 75000aaagtggaat aggctcaatt
ctttaagtga tagcatgttg aacctttcca taccaactgg 75060ctcataagtc
acaactggcc agtcaacaag agtaaaaatt aactggtaaa aatcaaagca
75120aaaaacctac aattgtcaaa tttgtgggat aactccccct tttaaaatgt
catgcctgac 75180agtaatttct ctctagtttc caggttttca gtcagttgtg
tcttttttga gcagaaggaa 75240gcatgctaag agctcaatct tgtggctagc
tgggggtctt
tgtgtcagcc atgcatgtga 75300tggtgcccct gggtgcttgg ggctgcaggg
gaggggtaca gcagtagggg cctgttctgt 75360tctctcgtgc tgtggagtac
atagtgacat agtggggtgg tccttggtgt aggtcccttg 75420ttcctacccc
tgggtctgag atttatttag aagtggtgtt ggggctgtgc ggcaggcccc
75480tctgtaactg atcaatgttt gtgaagttgc tgtttgagag ttgaaaccat
gacataagca 75540gaaatggaag gaagaaagaa ccagttatgt gaaagggaca
catttacttt taagcttgta 75600tttactgaga taaagtattc ttaatcaatg
ttcttgagag gtgtgggaaa aatgcaacat 75660cctggttgca gttaaaccca
gaacattgtg tgttgaagag tgacggttct caaaccgtca 75720agacgcgggt
actgagtggg actaacctgc tgtcctcttg ccttggacct tgtgttccag
75780aactgtgtca tgagtctctg cagcagcagc tacagtgagt taggactgca
gctgatcatc 75840gatgtgctga ctctgaggaa cagttcctat tggctggtga
ggacagagct tctggaaacc 75900cttgcagaga ttgacttcag gtaagtgagt
cacatccatt agatttcatg aactaagctc 75960aattgaaagt tctgggatca
cttgatgcaa ggaatgatgt tatcaagtac cctgtccatc 76020agaaatccga
gtggtttagg tagatgacag tgattttctc ctcccagtgg ctttttgctg
76080aactttgccc tatgcttgga attttatttt attttattat ttatttagag
acaagatctt 76140gctctgtcgc ccaggcttga atgcagtagc acaatcatag
ctcactgaag ctttgaactc 76200taggactcaa gtggtcctcc tgcctcagcc
tcccgattag ctaggagaat aggtgtgtgc 76260cgtcacactg gctaatattt
tttgtagaaa tggggtcttg ctatgttgcc caggctggtc 76320tcaaactcct
gggcttgatt gatcctccat cttggcctcc caaagtgctg ggattacagg
76380catgagccac tgtgcctggc ctagaatttt aaaatataag tagaagagta
gatttttttt 76440tttggtagtc ctcgtcattt aagtattctg gatagtggga
ataaaagagc ttagaatttt 76500tcatctttgt cttaaacttt taaaaaaatg
tagcttatat taattctgct tgtttaaaaa 76560gaatatactc ttcattatac
tgaacctagg taagacagct ggtttatatt ttgttgcaat 76620taaaaaacgt
gagctgtggt tgcagtgagc caagattgtg gccattgcac ttcagcctgg
76680caacagagtg agacttggcc tcaaaaaaaa aaaaataaca tgagctgtgt
tggcactttc 76740attttctaag agtagttttg gctggagaag ttttctttca
gtactttctt ttagaaggga 76800aattttcctt tataatttag ggtttgtttt
ttttttttcc aagccacctt ttatagagcc 76860cttgtgggtt atttcattta
atccttagaa tgtttataaa tctgggcttg ttctcggctc 76920cacccacaga
tagggacgct gagcgtgcat gagtgggcag caagatagca ggttatggag
76980ggcccagctc accccttctg tggcttgagc caattttata gggcacttac
agagtctttt 77040gaaatagtat ttattttgaa gaaaaagaaa aacagtttac
tgagtactgt cttattgagt 77100ctggaattgt gagaggaatg ccacctctat
ttatttaaag ccattggcct tttttgttgt 77160tttgagtaag tgctgcccaa
ggtccttcca gggcacctgg atgagcctgc tctggagcaa 77220gctggcggta
agtgtttact gagtaactaa atgatttcat tgttaaatgt gctcttttgt
77280taggctggtg agctttttgg aggcaaaagc agaaaactta cacagagggg
ctcatcatta 77340tacaggggta agcggtttat ttttgtgaga tgctgtttta
ccttcaagaa ggtgaaagtg 77400aggctttcct tgtggaattt ctctaaatgc
attcgtcatg ttttagatgt ttatttcaca 77460gtttatatca tgaaagttat
aatcttgtca tatggattta agtctagtaa tgttgagttc 77520tttctcacta
gctttccaaa atatcttacc taaaatttag tcaaatacaa gattatgttt
77580atttttatta tccttctctc taaagctttt aaaactgcaa gaacgagtgc
tcaataatgt 77640tgtcatccat ttgcttggag atgaagaccc cagggtgcga
catgttgccg cagcatcact 77700aattaggtat ttaccaatat tttatctctt
ttcctttttt ggttgaagta ctaaaagata 77760cgagaatgga aagagaggga
agaattcaaa ggatgtagag cagtattcct gaatctgagc 77820tcatttcagc
cattctattc ttaaactata atgaaaaaaa aatccaaaaa agtctaaaat
77880tataattaaa aaaacaacaa aatactaact gtccattgta aaaagtaatg
cactttcatt 77940gtaaaaattt tggactatag agaatagtac taagaagaaa
aaaaaaatca ccttcaattc 78000tgctgccacc tggaggtaat cactgttaat
attttgctat atactctatg agtttcttgt 78060tcaaaatcag gtcaaaatta
catgcaattt tgtaatctga caatttccac ttaatatttt 78120attagcattt
tcctgttatg aaacagtaat tttagttatg ggtcgttgtt ttgctatgcg
78180gttgggataa aattttatat actttttttg gcaattactt attatacata
aatgtttgtg 78240tatagttttc tttttctgag aattcctgga agttgagtta
ccaggcccgg ctttgaattt 78300ttttttttat tttttttttg agacagagtc
ctgctctatt gtccaggtgc tatctcggct 78360cactgcaacc tctgtctccc
tggttcaagc gattctcctg cctcagcctc ccgagtagct 78420gggattacag
gggcacacca ccacgcccaa ttaatttttg tatttttagt agagacaggg
78480tttcacgata ttggccaggc tggtctcgaa cttctgaccc cgtgatccac
ctgcattggc 78540ctcccaaagt gctgggatta caggcgtgag ccatggcgcc
tggccaggct ttaaatttaa 78600aacaaatctt ctaatagctt tatggaggtt
ataatttaca tttcttgaaa tgtactcact 78660ttgagtgtat agtaaactcc
aattttatca catttctgtc accccaaatg tatccttgtg 78720cccatttgct
gtaacctccg gttcctgccc caactcctag gcagccactc atctattttc
78780tgtcccttaa gatttgtgtt ttcgccaggc gctcatgcct gtaatcccag
cactttggga 78840ggccgaggtt ggtggatcac ttgaggtcag gagttcgaga
ccagcctggc caacatggtg 78900aaaccttgtc tctactaaaa atacaaaaat
tagtcggatg tggtggcaca cgcctgtaat 78960cccagctact cgggaggctg
aggcaggaga atcacttgaa cctgggaggc ggaggttgca 79020gtgagcagag
atcgcgccac tgccttccaa cctgggcaac agagagagac tgtctcaaaa
79080caaacaaaga tttgtatttt ctggacattt tatagtactg gggtcatagt
atagatggac 79140ttttgcattt ggcttctttt acttaattgt gagattggtt
cttgttgtag catgtatcag 79200tagtttgttc atttttattg gcgaaagtat
tctattatat gaataatacc atattttatc 79260tatccatcag atggatatta
tagagttcat gttttggcta atttatgaat tatggtactg 79320tgaacatttg
cctgcaagat tttgtgtaga catgtcttca tttctcttga gtagatcacc
79380tagaagtgga tttttaaata attttggtac ttactgtgaa actgctcttc
aaaaacatac 79440cattgttcct tccttccttc cttccttcct tccttccttc
tttccttcct cccttcctcc 79500ctcccttccc tacttccctc tccctttccc
tttcccttcc ccttttccct tccccttccc 79560gcctgcctgc ctgcctgcct
tccttccttc cttccttcgt ttctttctac atatacacat 79620ttttttaaat
ttcaatggtt tttggggtac aagtggtttt tggttacatg gctgaatttt
79680ggttacatgg tgaagtctga gattttagta cacctgtcac ccgagtagtg
taccttgtac 79740ccaatatgta gttttttgtc cctcaccttc cagccttccg
ccttgtgagt ctccaatgtc 79800cattatacca cactgtatgc ccttgcgtac
ccacagctca gctcccactt ctgagaacat 79860atagcagaaa catgccaaag
tatactccca ctaccagaat gtgattgtgc ctgattcttc 79920tcaccagtac
aaatatttca aaaaaagtta aatatgtatc agttttttgg gcagaagttg
79980atacttctct ttatttattt attttttttg agatagggtc tcattctatg
atgcccaggc 80040tggagtgtgg tggtgcgatc tcggctcact gcagtctctg
cctcccaggt tcaagtgatt 80100cccacgtcag cctcccagga agctggaatt
acaggcgagg gccaccactg ccagctaatt 80160tttgtatttt ttggtagaga
tggggtttca ccatgttggc cagactggtc tcaagctcct 80220gacctcaagt
gatccacctg ccttggcctt ccaaagtgct gggattacag gcgtgagcta
80280ccacacccgg ctgatatttc tttttaaaat aacttacctt cttttgaaag
taatacatgt 80340ttaatgaaca gaatttaagg aaaatataaa aaaacgaaat
aatctttgta atcaaactac 80400tgaaaagaaa accaaagtta cattttggtg
catattcttt ttcattttca tcattgtaat 80460ttgcatttct ttgattactt
gtgagacact cctttcattt acttaatagg tttatatgac 80520ttgcctattc
agagattttg cagctttacc attttctgca aatgatagca acttcttttt
80580gtttgtttgt ttgtggagac agagtctcgc tctgtcactc aggcaggaat
gcagtggtgg 80640aatcttggct cattgcaact attgcctcct gggttcaagc
gattttcctg cctcagcctc 80700ccaagtagct gggattacag gagtgtgcca
ccatgcccgg ctaatttttg tatctttagt 80760agagatgggg ttttgccatg
ttggccgggc tgatcttgaa ctcctggcct caagcggtcc 80820ccctgtctcg
gcctcccaaa gtgctgggat tacaggcgtg agccaccgta cccagccagt
80880agttacttct tatattctag aaaaaattct actcatgatc aagtctccat
gaggaaagag 80940actttaattg aagatcatgg ggcttgcaga ccaatatgat
aaaatagttc attgtttcta 81000aaagtattac tgagtgttga tggcagatat
gaaccctttt gtttttgtag gaaaatgtta 81060cccgtattct ccatttgaat
tcagtttaga tttgttagga atcgcagctt aagctttgcc 81120atctgggagt
gtttgggaca gttttgcaga caaaattgca aaagtgccta aggaatgcag
81180ctggcattca gacctgctct gtgctcagta ctctgtggac agacactgtt
cagcacttgt 81240tgatcagaag gtttagaaag agaactttca aagttggttt
ttaattaaag catttaatag 81300tgtaaataga aagggattaa attttatgac
agacaaaaga aagtacagca cccagctggg 81360cgtgggggct cacgcctgta
atccagcact atggggggct gaggtgggtg gatcacgagg 81420tcaggagttc
aagagttcaa gaacagcctg gccaaggtga tgaaaccctg tctctactaa
81480aactacaaaa attagccggg cgcggtggca ggcgcctgta atcccagcta
ctcaggaggc 81540tgaggcagga gaatcacttg aacctggacg gcagaggttg
cagtgagcca agattgcacc 81600attgtactcc ggcctgggcc acagagtgac
attctgtctc aaaaaaaaaa aaaaaagaaa 81660aaaagaaagt acagcaccca
gttatgtccg agtgggtgca tgagagtgac cctgagattg 81720gagacaacgc
tgtcacgtgc ttgaagaacg ccacctgaga aagggggcga gaagtggtgt
81780ccgctggtaa ccagaggtgt tggcttagcc atctgcaggg aggagggtgg
tctatcacag 81840gtgagtttca tctactttct taagcaaatt aaccttactt
ttgtgttagg cttgtcccaa 81900agctgtttta taaatgtgac caaggacaag
ctgatccagt agtggccgtg gcaagagatc 81960aaagcagtgt ttacctgaaa
cttctcatgc atgagacgca gcctccatct catttctccg 82020tcagcacaat
aaccaggtat gctgacccag tggcatcttc acattgtcgg gaaaatgccc
82080tttcctgatg cctttcttta ggctttaatt gaaaacattt tattttctag
aaaaaagctt 82140cagctcagga tgtttgagtg taggtcagtc ctttgatagg
atattatcat tttgaggatt 82200gaccacacca cctctgtatt taagctctgc
cacaatcact cagctgtgac actgtaaatc 82260tcttaatagt ttattacatt
ccatgtgctg acagttgtat ttttgtttgt gacacttacg 82320tattatctgt
taaaacattt tcactttagt tgtgttacct ttaaagagga ttgtattcta
82380tcatgcctgt tgattttttg gtgagcgggc tattaaagtc agtgttattt
agggttatcc 82440actagttcag tgatttgcga gattatcatt cacatttatt
gtggagcttt tgaatatcgt 82500gtcaaatggc cacatatatc ccattcttat
ctgcttctta ggtgagtggg acacagtgct 82560ttaatgaagc tataatcttc
agaattctag cttgcagaga agattgcaga agtgataaga 82620cttgtgcttt
ttaattttgt cttttaaatg ttattttaaa aattggcttt atatgatact
82680ctttttttct gctgagtaac agtgttttac aaaacttgga ctaaatgact
tctaagctta 82740aatgatcact tgatgctttt tttctgaatt aggaactcag
cttatcaaat atcaaagtca 82800taattcctga ataaataacg tcttttttca
tgtaaagact gctttaaaaa acacatggaa 82860ggctgggtgc ggtggctcac
gcctgtaatc ctaacacttt gggaggccca ggtgggcagg 82920tcgcttgagc
tcaggggttc aagaccaccc agggcaacat ggcaaaaccc acctctactc
82980aaatacaaaa aattagccag gcgtggtggc gggcccctgt aatcccagct
actcgggagg 83040ctgagggatg agaatcactt gagccccgga ggcagaggtt
gcagtgagcc aagattgtgc 83100cattgcactc ccagcttggg ctacagagtg
agactctgtc tcaaaaaaag acacacacac 83160aaacaaaaaa aacatggaga
catttttttg gccaccttaa tatttcccct cagataattt 83220cctttgttta
aactcagaac tggcattttc tctcttggag aagattcagg acaaatactc
83280ctttaagata agtagaagca gtgaaagagg atttgattat caggaatttg
ataagcttag 83340aataaattgt tgcttcttaa tgtcatttca gaagatgaat
atttattaat agatgccaac 83400tgagatatca ttaaaattga ttactaacta
ctacttggaa aagtctccca gttccaaact 83460tcagcaggcc tcttgacaat
tcagctgtgg tcaattgggt cttgcgtgat agatacaatg 83520accaattgtg
cagcagagtg tgctgcttag ctgcctattc tgttagcatt catgtgttaa
83580cttaaaatca taatctcctt agttttgttg agtgtctccg tggacaagac
actgtgaggg 83640atacaaaatc agattggctt tattcaaacc actggggtat
tataattcat ttataattta 83700ttttattttt tgcctttttt ccatgtgttc
taaaggaatt agagtttgta tataactata 83760atgggggata gaaattgaca
tgtgccatga agggaatgca aaaaagtgcc gtgggagatg 83820agaagtggag
aaaggaattt cttttttctt ggaagcagga ataacttcat gaagcatgta
83880tttcaactta aacagatagt aggcaacgct gtaaggggag tatggctgca
gcaaaagtgt 83940tcggggcaga ctgggaggaa gggagggaat aaattcagcc
attgttatgg aataatgatc 84000aaaatttatt ttcagcccgt ttcacttaaa
agttgagact gcttaacttt ttttaatctt 84060taatcttaaa cttttaaatg
ccatttgatc tttaaaaata tatgttttaa tagtgtattt 84120taagtctcta
tatttttgtt attagaatat atagaggcta taacctacta ccaagcataa
84180cagacgtcac tatggaaaat aacctttcaa gagttattgc agcagtttct
catgaactaa 84240tcacatcaac caccagagca ctcacagtaa gtctctttct
tgatcggtct tactgacatt 84300gtaatagttt ttggtagctt gtatggccag
ttagttgtat ggtcatctta cggtgaggtg 84360cttgtcttac agctcttact
tatccatgag gcttgctaag aaattgtgct tctgtgaaaa 84420gaatctcagc
ttactccagg aatgtaaatg actatgtttt ttctgattat taaagtaata
84480cacgcccaaa ataaaaaaat tcagccaatt taggaagaca caacaattaa
aataagccag 84540gcatggtggc tcatgcctgt aatcccagca ctttgggagg
ccaaggttgg gggctcactt 84600gaggtcagga gtcggatacc agcctggcca
acgtggtgaa accccatctc tactaaaaat 84660acaaaaatta gctgggcgtg
gtggcgggcg cctgtaatcc cagctactca ggaggctgag 84720gcaggagaat
cgcttgaacc tgggaggtag aggttgcagt gagctgaggt caagccactg
84780cactccagcc tgtgcaatag agcgagactc tgtctcaaaa aaaaaaaaaa
aaaaagaaaa 84840gaaaaaagta aactactgtc acctgcattg gtaatgtatc
agaagtttaa aatgtctaga 84900ttataattaa ctcagtgacc tggtaatata
tactaaggga aaaatattta taatttacat 84960ttttacattt ttattttttt
aattttatta tttttttttt gagacagagt tttgctcttg 85020ttgcccaggc
tggagtgcaa tggcatgatc tcagctcacc acaacctcca cctcccgggt
85080tcaagcaatt ctcctgcctc agcctcctga gtagctggga ttacaggcat
gcaccaccat 85140gcccggctaa ttttgtattt ttagtagaga cagggtttct
ccatgttggt caggctggtc 85200tcaaactccc aacctcaggt gatccgccct
cctcgacccc ccaaagtgct gggattacag 85260gtgtgagcca ccatgcctgg
ccttacattt ttataataag aatttatgtt gctgacatta 85320gaaaagaacc
ataatatcca agaatccaag aataattaaa ttatgtacat atgctagtat
85380atagtgtgat gctttggaga atttttaaca atatggagat gtataatctg
gattgtaata 85440ttgagtgaaa aaaggcagaa tacaaacctg gtgggggtat
agtcggattt cagttaagaa 85500aaataatatt tacatatata catttctcac
actggcagat aatcaccaag ataaattttg 85560ggattgtgga tgattttttt
cttctttata tttttcagat attctcaaat tttctaaaat 85620gagcaagtat
aacttttgtt atcagaaaaa aataatatac aaaagtaatg ttaatttgct
85680ggtgaccagg ttaaaccttt ttatttttat tttttgagat ggaatctcac
tctgttgccc 85740aggctagagc acagtggcat gatcttggct cactgcagcc
tccgcttcct gggttcaaat 85800gattctctgg ccccagcctc ctgagtggct
ggaattacag gcgtgtggca ccacacctgg 85860ctaatttttg tatttttagt
agaggtaggg tttcaccagg ttggtcaggc tggtctcgaa 85920ctcctgacct
cgtgatccac ccacctcggc ctcccaaagt gctgggatta caggcgtgag
85980ctactgcgcc cagccagacc tttttatttt atttgacaaa agaaatactt
ccatgttata 86040gaagactaaa tattgtttgg gctgtctgca gtatggtctt
cccttgattt gttcaaaata 86100tcgtaaactt tgcttattta tttttattgt
ggccgactgt gtcgggcact gttgtaggct 86160tgggatggaa aaacaggatt
cctgccctta gggtttctgc aggctggtca gggagacgat 86220gtggtaagct
ggagctcagc tcctaaggat gtgcaggggc agttgagagg cggaagggtg
86280ggagatcatt ccagggtgtg ggcagcacag gaacctctct tcattgggat
ataattgcca 86340ttctgataac acgtgtttga ggtgtctaaa gtaggaagtt
gtaccatggt gggacagata 86400tcctgtggtt atcatacaca gatctcagtt
ttcttctcat tgtttgtact ttttataaag 86460ggtaacagga gatataattc
aataaacctt tgtggtgttt gggtgtgatt ttattgtttc 86520tttcttctca
gtttggatgc tgtgaagctt tgtgtcttct ttccactgcc ttcccagttt
86580gcatttggag tttaggttgg cactgtgggt atgtattttc ctcagtatat
attaatagtt 86640gtctacaaca gtatgacata aacatagtta ttaggatgcc
ctttttcttt ctttttaagt 86700cttttatcaa tttggctttt tggaaaaata
tctgatggaa tacttgtttc tgctatatta 86760gctgtgtgag actagtgaca
ggagctgtgg gaaatgaatg ccaaatgttc ttaggcattg 86820atgggaattt
cagggtgtgg tcttcaagtt catttaaggg aattttcata tgctggcaaa
86880aggcttttct cattagcttg actctttcca aaattatttg ctgtgaatta
gaagtttagg 86940aacctttttt cacttaattg tgacctagca tacgaaatgg
tgatgattta ggaactactg 87000ttcttgtatt aacagctttt atttaaaaat
gattttcctc cagtagatgg ccctactagc 87060atctgggaaa taatttcaag
tcttctccag cattcaggaa taggctttca ttttgtgtat 87120caattactga
gaatgatttt ggtgactcac atcacatttg agaagtaaac ctgcagattt
87180cttgtgtgtg tcagcaaatg accaactgat atttgcttga agtggattac
attatctgct 87240ctagaatgat tgctttccca ccttcctcac atacagactg
agcagctacg gtttctaatc 87300ataggtctgg cactagactt cacttctggg
caactttggc attggagtaa aatgtattaa 87360tttaaagaaa gttaaaaatc
cgttcaagta aacatacagt tctaatactt tttacaattt 87420aaaatataga
tttaaatgat aaaataaaaa agaaaatatg ggtagacacc ataatcctcg
87480tttctgcatc tgttcacaag gggttgatat ttatgagttc tattctccat
atccattcta 87540tgttctctta atgctcagtc agcacctcag gtggttggag
ttcaatgctt ggtagtttga 87600cttacactgt cttttctagg ggattgagcc
ctgggtagtc ctgcttattt gaggttgcaa 87660tttgtctttc aataactttt
actacaagat atggcgtgtt aaaggatacc attggggaac 87720caacataata
atatcaggaa aactaaccac gtcagacctg ccccattgtg tatcaagtac
87780actatttttc catagtaata aagagttcac cccagccaat tctcttttat
tttgtgcctg 87840tttactcaat ggcattaaca tgcccaaatg tctgggtagc
tgtctcatct ccagttcagc 87900agaaccattg tcatatgccc tagtaaaagc
attccttcat tggacactta ggccccaata 87960ctttcattca gatctactac
ctgatttcat ttctcaaatg atttttatgg agctctgatt 88020tataggaaag
atgttagttg attaaaaata aaacaatttc tgagctggta taaaatgtat
88080tgtgacatgc cttcctcttg gaattgcaag agaaaggaag actgttgttt
gcttaaaaat 88140tgtctataat ttgactttgc aaatgtctgc ttccagagtg
cctccactga gtgcctcaga 88200tgagtctagg aagagctgta ccgttgggat
ggccacaatg attctgaccc tgctctcgtc 88260agcttggttc ccattggatc
tctcagccca tcaagatgct ttgattttgg ccggaaactt 88320gcttgcaggt
actggtactg agttgaaaca gggactccag gacttggatt ttgatttcct
88380tagggggaat gggggtggtg agcatatgag gggaaaatac tataaggtca
ttgccagtga 88440tggcttgtcc ctttagtcaa atttcagatg ttacctatat
gcataaacac atgcagttgg 88500cagctgttct gtgctgagta ttttaaagta
gcctcttccc aatatagccc ctcagttaac 88560tacaagtaaa ctcattttga
atttcatttt aatgggcacc atatgccagt actccctcgg 88620gcactgggat
gttaagaaag tataatgtat ggacttcatt ctcaagttag ttttagatta
88680gagggggata cacgtaaaca aaagtgcagt ggtcacacag agtggcccta
atcactctcc 88740ttgggcagat ttatgggctg gtaggaaaga gcacaacacg
gagagggtgt agcaccttgg 88800cgatgataat ggaggatgtg gccagcaagg
aagacggagt ccattgaaat tgattttggg 88860agaagttgcc aatctccatg
aaagaattgg ggcctgtgct atttgcttca gggggctata 88920ggagagtttc
gtgaaaggga ctaaaagatg agtattttaa taagatcatt catccaactt
88980gaacatgggc tggaggagaa ggtagggaga ctcaggagat taatgttgat
gctaaggcaa 89040gataatggct ttgggactgt agggaagaca ctgattgtaa
gagaatgaag gaggcagaat 89100tgccaggcct ggttcaccaa ctgaacttcg
gttgtgaaga caaagaaacc tgggatgact 89160tcacatcctg ggcaggtgtg
tggtggtgac agtcatggaa attgggaaca cagatttgtg 89220cgggaaacat
cagtttcagt ttgagtttgg cttatcagtt gaatatcagg cacagatgtc
89280tggccaactc tcaacatagg gtcttaaatg acttcagttc cccaagcaat
ttgtccttcc 89340catgctattg gggtggagag gtaatgtctg tgcccatatc
acagccagtg ctcccaaatc 89400tctgagaagt tcatgggcct ctgaagaaga
agccaaccca gcagccacca agcaagagga 89460ggtctggcca gccctggggg
accgggccct ggtgcccatg gtggagcagc tcttctctca 89520cctgctgaag
gtgattaaca tttgtgccca cgtcctggat gacgtggctc ctggacccgc
89580aataaaggta atgtcccact tgggtgctgg attcatacag ccttaatgac
tatgggtttc 89640cagactacct ttgtttagta atctgtccct tctttattct
ctttttgctt taaatgaaca 89700aaattgctca gattgtgaca ctaaatttaa
catcaaaatg tgaccatgtg gatgggtgca 89760gtggctcgtg cctgttattc
cagcactttg ggagactgag gcaagtggat cacttgaggc 89820caagagttcg
agaccagcct gggcaacatc acgaaacccc ctctctacta aaaatacaaa
89880aaattagatg ggttgggccg ggcgtggtgg ctcaagcctg taatcccagc
actttgggag 89940gccgaggtgg gcggatcacg aggtcaagag atcaagacca
tcctggctaa cacagtgaaa 90000ccccgtctct actaaaaata caaaaaaatt
atctgagcat ggtggcgggc gcctgtagtc 90060ccagctgctc gggaggctga
ggcaggagaa tggcgtgaat ccgggaggcg gagcttgcag 90120tgagccgaga
tcgtgccact gcactccagc ctgggtgaca gagcgagact ccgtctcaaa
90180aaaaaaatta gatgggcatg gtggtgcgtg cctgtaatcc cagctacttg
ggaggctgag 90240gcaagagagt tgcttgaacc tgggaggcgg agtttgcagt
aagccttgat tgtgccgctg 90300cactccagcc tgggtgacag agtcagactc
tttccaaaag
aagaaaaaaa tgtgaccatg 90360tgttttatag ctcttttagt atcatcagtc
actgttatcc ctaagaggga aatacctagc 90420tttagtttta ggtttccagc
attagccaag aaagctcaga attgatgttc ctggccaagt 90480acctcattgc
tgtctcctta aatcttggtt aatggctact gtcctggcta gcatagttat
90540ggagcatttc catggttgta gaatgttctg ccaatctcag ggacagtttt
gcttttctgt 90600gaagcaataa aatcaacttc aaaacaaatg ttaactattt
gtacaatgga tttaagatag 90660accagttcac atactttttt tttttttttt
ttttgagatg gagtttcatt cttgttgcct 90720gggctggagt gcaatggtgt
gatctcagct cactgcaact tctgcctcct gggttcaaac 90780gattcttctg
cctcagcctc tcgaggcaga ttacagctgg gattacaggc atgcaccacc
90840acacccagct aatttttttg tagttttagt agagacgggg tttcaccatg
ttggtcaggt 90900tggtctcaaa ctcctgacct gaagtgatct atccgcttcg
gcctcccaaa gtgttgggat 90960tacgggcatg agccaccacg cccagcctaa
gatagaccag ttcacttact gtttatatct 91020gattactctc tctttgcctt
gtcttctacc tttaaaaatc tccctactaa cttcccattc 91080tcctttagct
gccatcagtc ttctcccttc tctgcaaaca tctctggaga gtcccagcct
91140cagcccacag agcttcccac tgctctgagg tggaccttgt ttgcaaggct
tctttggctc 91200tcttggcctg gaccctgtct actacttcag ccatccttcc
ttaacccctg ctggtggttt 91260ctgttgccac actccatagc agcgtttccc
gcccagatca tgtctttaca tctctgggca 91320ctgctctggt cctgcctgcc
tttccctctt tgtatcctgc aggctgctac ccccatcttg 91380agtgtcctct
tcagttggct ttcagagggc ctcctgggtg ttcccttacc cacttgccac
91440tccccagtca ctgggttcag tccttcctgc ccaccagcac atgctttcta
ggctctgtcc 91500taggccgtct tctctctttg tagtctctgg gccagtgctg
ttctagagag tggcagaatt 91560ttctataacc atggcagtgc tccatagcta
tgccaggcaa gacagtagcc actaaacaca 91620tatagctgtt gagcccttga
aatgcagcta gtgtgactga agaactgaac cccgattcgg 91680tttaattttc
attaaattta aatttaaata accttatgtg ggtagtggct ccagtattgg
91740gcagggcagc ctgagagtcg gggctgttct cctgtcttca gtgtctagat
gagggacctc 91800agaggacctg tctctggagc tgcagttcaa tgtagccagc
tgccccgtga cacttacata 91860tagctgattt gtggatatgt cagacacggt
gtgatgagct cagctttctg tcctcctccc 91920cacatctgcc cctgccccat
ttaccccact ttgtgtctta tcaagctaga aacaggtcac 91980cacaagtctt
catttccact caccaagtct tttgtttccc ctactaaata ttttgcgaga
92040agaaagtgtg tacctttgta ttcacataca tgtacatgca catatacatg
cacatatgca 92100ggggtcccca acctctgtta aaaaccggac tgcaggccgt
gcgtggtggc tcacgcctgt 92160aattccagaa ctttgggagg ccgagaccag
tgcatcacaa ggtcaggaga tcgagaccat 92220tccggctcac acggtgaaac
cccgtctcta ctaaaaatac aaaaaaaaat tagccgggtg 92280tggtggcggg
cgcccatagt cccagctacc tgggaggctg atgcaggaga acggcgtgaa
92340cctgggaggc ggagcttgca gtgagccgag attgtgccat tgcactccag
cctgggcgac 92400agagcgagac tctgtctcaa aaacaaaaca aaacaaaaaa
aaaaaaaacc aggctgcaca 92460ggaagaagtg agcaagcatt accatctgag
ctctatctcc tctcaggcca gtggtggcat 92520tagattctca taggagcgtg
tatgagttcg ttctcacact tctgtaaaga catacctgag 92580acatataaag
aaaagaggtt taattggctc acagttctgc aggctgtaca ggcttctgtt
92640tctgggaagg cctcaggaaa cttgcagtca tggcagaagg tgaaggggaa
gtaggcacat 92700cttcacatgg cccacaggaa aaagagagaa ggagagagag
agagagacag agagagagag 92760agaaaaagaa agattgagag ggagagagga
gggagaaagg agagtgcctg tagggggagt 92820tgctacacaa aggagcacca
gggggatggt gctcaaccat tagaaactac ccccatgatc 92880caatcacctc
ccaccaggcc ccacctccga cactggagat tacaattcag catgagattt
92940gggtggggac acagagccaa accatatcag agcatgaacc ctattgtgaa
ctgcacattt 93000gagggatcta ggttgcatgc tccttatgag aatctaatgc
ctgatgatga tttgaggtgg 93060aacagtttca tcccgaaacc atcccccgcc
aaccctggtt tgtggaaaaa ttgtcttcca 93120cagaaccggt ccctggtgcc
aaaaagtttg gggacctctg cacatatgca tgcacctgta 93180catggacaca
taatacatgt acatatgcat actttatatt ctctgccact tctggtccag
93240actgatatac tatctcattt ggattactgc actagccttt tgttttggaa
acagcatttt 93300ttaaaaaatt taatttaatt tttttgagat agggtgtcat
tctgttgccc agcttggagt 93360gcagtgtcat gatcatagct cactgcggcc
tcgatctccc aggctcaagt gatccttctg 93420cctcagcctt ctcagtagtt
gggactacag gcatacccac catgcccagc taattttttg 93480attttttttt
ttttttgaga cagagtctca gcctgtcgcc caggctggag tgggttggcg
93540cgatctcagc tcactgcaac ttctgcctcc caggttcaag tgattctcct
gcctcagcct 93600cccgagtagt tgggattaca ggcgcctgcc accacaccca
gctaactttt tgtattttta 93660gtagagacgg ggtttcacca tgttggccag
gctggtctcg aacttgtgac ctcgtgatta 93720gcccgcctcg gcctcccaaa
gtgctgggat tacaggcgtg agctaccgct cccagccagg 93780aaacagcatt
cttgagataa ttcatataat tcacccattt aaagtatata attcattctc
93840tttagtatgc ccacagagtt gtacagccat caccagaatc agttttagaa
cccataaagg 93900aactctgtac tctttaccca aaacctccat gcctccagct
gcaggcagcc actaacctgc 93960cttctgtctc tgtgactcta cgtcttctgg
acattactgt ggatgggctc atacagtcag 94020tgagcttgtg actggtgcct
tctaccaagc agggttttca gtgtagcagc ctctctgttt 94080ttcttttttt
tttaaattgt gacggaactt ctgcctcccg ggttcaagcg attctcctgc
94140ctcagcctcc cgagtggctg ggactacagg cccatgtcac catgcctggc
taattttttt 94200tttttttttt tttagtagag atgggtttca acatgttagc
cagggtggtc tcgatctcct 94260gacttcatga tccgcctgcc tcggcctccc
aaagtgctgg gattacaggc gtgagccacc 94320atgcccggct aacctttcat
ttactgtctg catttcttcc ctgatgcctt ccagtccatg 94380cacccgattg
tagccattca tcctattatg gtttaaggtg actgtcttag tcagcatggg
94440ttgccataac aaaataccat agcctgggtg gcttcaacaa cagaatttac
ttctcacact 94500tctggaggtt gggaagtcca agatccagga ctttcgcctt
gccctcatgt ggtgaggggg 94560tgaggaagct ctgtggggcc tcttatatat
ggatgctaat ctcattcatg aggggtctgc 94620cctcatgacc cagtcacctc
ccaaaggccc cacctcctaa taccatcacc ctggtaatta 94680agtttcagtg
tataaatttg ggggactata gacattgaaa ccataacaag cacttttcta
94740agatcaggga gtgagtaagt agcagagcta ggacctcaat tccacatgtc
agtcatcttg 94800ccttcactct gctccatgat ggctgcctcc tagagcattg
ggagtctcga tgttctatat 94860gctctcatgt gttgtgtatt ggagatagtt
gaggctttat gaatacatct ggatttgttg 94920acttctagct ttgctggtaa
ccagctgtga ccttgaataa gttacttcat ctctgagcct 94980gtttcctctt
ttagaaacag gagtttaaaa tgctgctttg ggttgggcac ggtggctcat
95040gcctgtaatt ccagcacttt gggaggctga gatgggagga tcactggagc
ttggagttcg 95100agaccagcct gggcatcata gtgtgagatc ctgtctcctc
aagaaattaa aaaattagct 95160gggtgatgtg gcgtgtgcct gtggtcccat
ctactctgga ggctgaggtg ggaggattgc 95220ttgagcccag gaggttgagg
ctacaatgaa atatgattgc accccatcct gggtgacgag 95280tgagaccctg
tctcaaaaaa gaaaaaaaaa atgctgcttt gtaccccttt catgtcatgg
95340cgtcatggcc aacatagaat gccctggttg tttgctgttg gagggcatgg
gcctgggggc 95400tccctgaggg ctccttccat cttcaactca ttctctgtgc
acctgttagg aagttgtggg 95460ccagtcccta ccatgtatca ttgtgtgggt
aaaagtaaat aaaatgtgta cagtgtctga 95520actgtacata tcagggtcca
agaacaaaat gagtgacatg ggttagctct ttttaataaa 95580tggtaaaacc
aaatattcta attttcagtt ttgttatact tccatcacat gtttttgttt
95640ttttgttttt tgtttttgtt tttctatttt aggcagcctt gccttctcta
acaaaccccc 95700cttctctaag tcccatccga cgaaagggga aggagaaaga
accaggagaa caagcatctg 95760taccgttgag tcccaagaaa ggcagtgagg
ccagtgcagg taggaaacag cgtggggaag 95820ggagggacat gagtgcagca
tctgtcatgt agaaacatag gatttaagta acttggtgtt 95880ttagagaaat
aaatataata cacatcagta aagtgagaga aagtttctcc aggtgcggtt
95940caagatatta gaaactaatg actgatgtac acagaccacc ttttggtctg
aagcatttct 96000aagtgccact ggctgacatg cagcccctac agcctccagg
cttccagccc tagcatggag 96060catcactctc ctatgcttcc ctggttgcag
gtgatggctg gagaggcctc ctgattttca 96120gtaagggaag tggtgtagat
gcttaggaat agatgtagtg agtgaaaaaa ctgattctga 96180tatgtcaaaa
attctgattg gaaatggaat atttacattt ggaagagcta aaggcgagag
96240aaagtgggga taaagtcatc tgagttggag gagcttaaac cattcacaag
tttggaggac 96300ctttttttac ccatgaaaag gtcagaacag aaggggctag
gatttaggtg tgactgcagt 96360ttattgaatt cccatccata ctgctctcgg
tgggcagtgg caggggcagg agaggagcct 96420ggcaaagcat gaagtgactg
ctgctgcctc tgctatctgg gacgcctggc cacctgtctg 96480tacagtctcc
ctccagaccc attctcacgc tgtctcttgg cacccagggg ccagtgatgg
96540ttctcccatt tgttttgtgt atatagcatt tatatcaagg ctatttattt
atttatttat 96600tttatttatt tatttttttg agacagagtc tcactctgtc
acccaggctg gagtgcagtg 96660gtgcaatctc ggctcagtgc aagctctgcc
tcctgggttc aagcaattct cctgcctcag 96720cctcctgagt agctgggact
acaggtgtgc accaccacac ctggctaatt ttttgtattt 96780tttattagtg
gagacggggt ttcaccttgt tggccaggat ggtcttgatc tcctgacctc
96840gtgatccgtc cacctcagcc tctcaaagtg ctgggattac aggcatgagt
cactgtaccc 96900ggcctattta tttattttta attgacaaaa ttgtatatat
ctgtaatata caacatgatg 96960tttgaaatat gtgtacattg gccaggcgtg
gtggctcaca cctgtaatcc cagcactttg 97020ggaggctgag gtgggcggat
cacgaggtcg ggagttcaag accaaactgg ccagcatggt 97080gaaatcctgt
ctctactaaa aataccacaa aaaaaaaaaa aaaaaaaaaa agccgggcat
97140ggtggctcgc gccagtcgtc ccagctactt gggaggctga ggcaggagaa
ttgcttgaat 97200ctggcaggtg gaggttgcag tgagctgagt tcatgccact
gcactctagc ctgggcgata 97260gagcgagact ccgtctcaaa aaaaaaaaaa
aaagaagaaa tacatatgca ttgtggaatg 97320gctaattaac ctgtgcatca
cctcacgtat cattgttttg tggtgagaac acttaaaatc 97380tactctttca
gtgattttct tgcatatggt acattgctat taactgcagt caccatgcta
97440tacagtagat ctcttgaact cattcctcct gtctataaat gaaattttgt
atccttgacc 97500aacacattca aggttttttt tgagatggag tcttcttcac
ccaggctgga gtaccatggc 97560acgatctcat ctcactgcaa cctccgcctc
ccaggttcaa gcaattctcc tgcctcagcc 97620tcctgagtag ctgggattac
aggcacatgc tactgcacct ggctaatttt tgtattttta 97680gtagaagtgg
agtttcacca tgttggccag gctggtctcg aactcctgac ctcaagtgat
97740ccgcctgcct tggcctgcca aagtgctggg attacaggtg tgagccactg
cacccggcct 97800caagcgtttt aaaagatgct cttttctaag gattgactgt
agtacaggag gaagattgac 97860ctgttgaaaa gcctcagcct ttacaagtgt
aaaattatca gtatattact atcatctttc 97920tgatgaatta aataaactaa
ggactccaag tcaaaagtct tcaaactgaa gtagaatagt 97980tgtatatagt
gcttggcact ttaatattta gtatcggttt aatgataatg tttgtgcctt
98040tgccgtcttt aaaacatttt tacatcatcc ctgtttgatt acttggtgtg
ctcatgaagt 98100tgttggccac taaggaatct taggctcaga gaggttctgg
aattggccag tggtccttga 98160atcagctgct cctatgattc tctaactgat
ttctcacaaa gcaaacaagc aatcataaca 98220aaacaactgt gcacactgct
cttcttattt tgttatttaa aaagtactta ggctctactt 98280atgtttgtta
gtcaatttct cattacttct agttaatcaa aaggtcagag gaaatacttg
98340aatattttca tactagaata ctttaaaaaa tcatgatttc cagtaatctc
tttaaaactt 98400ggcaagttat tttgatctaa aagtttatct tttgtgtgca
tatttttaaa gcttctagac 98460aatctgatac ctcaggtcct gttacaacaa
gtaaatcctc atcactgggg agtttctatc 98520atcttccttc atacctcaaa
ctgcatgatg tcctgaaagc tacacacgct aactacaagg 98580tatgggcctc
tgcatctttt aaaaatatat atgcacacat acttacgtct aatggatagt
98640tgatgttttt cttatgattt gtaggatgta taagcccttt gagatatgag
ttacatttag 98700ttttttcaag tttgtttgtc tttcagcttt gtttatgata
gcttctatca tacaggtgtt 98760ttggattttc atattgtttg tactcacagc
taagattgat tacagtgaca gagctaggat 98820gtgcagccag gttatagggg
gaagtggccc tggtggagtc tggagggatc cgtgtacagg 98880cttccttccc
tcccgtgagg ctcacacaaa aatacagcaa catgctggtc ctgcaggtac
98940cctctgccta acatgagcca caattccaga ctcacagaag aaaagcaggt
gttcggcata 99000aaccatgtgt ttcaaatagt ctgggcatgg tgagccactt
gttatcagct agggaaagtt 99060tatgtcagcg taagaaactg ttcaccagat
acccccaaga gccagccttt ctgtctaggg 99120atgttttagt tttttagttc
attttttttt ttaactttaa aattttctgt tcatctgcaa 99180tttgttagat
atgaagtatg tgtctaattt aatttttgtt tttggttgtc cccaataatg
99240tttacagaag aatttttctg cactaattgg cttgagttac ttacattctc
atagttctct 99300agtttcagta gtttcattta ttattttgtt atatcaatct
atctgtctgc tcatctatta 99360gaagcatcct tgtttttttt ttttcttttt
tagacagagt cttgctctgt ccccaggttg 99420gagtgcagtg gtgcaaccat
gcctccctgc agtctcaggg ctcaagtgat cctcccacct 99480cagctcctga
gtacctggga ctaccggcat gtgccaccac acccagctaa tttttacatt
99540ttttgtagag acagggtctc cctaagttgc ctgggctggt ctcaagctcc
tggcttaagt 99600aatcctccct ccttggcctc ccaaagtgct gggattacag
gtgtgagcaa ctgcacccgg 99660ctacaagtat acttcttaat tattgtagct
taatggtatt tatgagggga tcagttcccc 99720tgttgttctt tagaattttc
tggatattct tctttattga ttttgggatg tgaacaatag 99780aatcaacttc
tacttgtaga ttgatttagg gagaacttat acctcagatg ttaagtcacc
99840ctgtccagaa tgtgggatgc tttcctattt gttcagaact ttttaaatta
cctcagaagc 99900acatgaaatt taaaggattt taaaaaaaac ttaaagatta
tttcacatag ctcttgcaca 99960tttcttgata aatgaatcct caggtattcc
tctgtttttg ttactaatag ttacttctta 100020tgggtttttt ttcccctgaa
aatcatttat caaacgtatg tggcttattt tctgaaggat 100080gtttgataat
tttggaagat atgaaagtct tcatatttta caaggtttga ggtctcttta
100140agctgcatgg ttctcatgtc agctcccaaa gcagaagacg gcatgttgaa
aaatgccgta 100200gagaagatac ttcttttcca cctgttttca actcatatca
tcttgaattt cagggcacct 100260ttccatgctc ctagtgcttg ctatctgttt
attattttcc ttcctgaata ccctgaactc 100320cagcatgttc tgctgtaatt
ctggcctccc tggcatcttg gactcctgtt tcctttgctc 100380tgtcatcccc
gcggtcagct cctgctgcgc agcttctcag ctgaagtgcg tttggagtgc
100440ctggcgtgtc ttgctggatc tttgagtatt gcctctggtt tccttggttc
cttctgctga 100500gttgctcagc gtctccactc cccatttctt gtgtggccct
tcctgcactc ctctgattcc 100560ttttgtcttc cctggtttct tgctttggtt
tcgagtctcc acagaacttt tgcagctctt 100620ctgaagacct ggaagctttt
tcatcttaat tctcatctca tgacctcttt tcccttcttt 100680gagagctaga
acttcccatg gtgaacttct ctttccagaa ttccatgcct tcttttccct
100740cccacttacc tgttgtccag gagaggtcag attgctgtgc atattggagg
agaacccttt 100800cttccctggg ctcttcatct cacatgacat caccacatca
cctcgttcct tggaccctca 100860gtggtgtcac tgctggattt ttctttcctt
tggctggcct tagggcacac ccaggttgac 100920tagcgtagtc atggtattta
gatccactca cattttcagt ttctgtgtct gtctcttgcc 100980tgcttctgac
ttcgcccaga gaaagcttct ctttcacaag ggttcttaga tttatgttca
101040ctgagcacct tcttttctga ggcagtgttt taccaatatt tattttccta
gtcagtctcg 101100ccttaccttt cttgttatgc atgtctttgg tcctgaccca
ttctctgagt ctgtaaaata 101160gaattgctgt ataatttaat tacatgaaat
cctttagaat cttaacacat cttacacctg 101220atttaatatt ttattgtatc
caaattgaac caaccctatg tgaatttgac agtgatttct 101280cccagggatc
ctagtgtata aggaatagga cttagtattt tctatttttt gatataccac
101340ataccagata ctgattatga tggacattta accctttttt ctcattatga
aagaaagtta 101400ggaattattt cttccagtag cgccagtgta acctgaaagc
ctttgaaaga gtagtttttg 101460tatagctatc tgaaaggaat ttctttccaa
aatatttttc cagtgctgac aacaaacacg 101520cagacacacc ctgcaaggtg
agtgtacggc gccgcacagt ggaggcatct gctgcagccg 101580tcgatgtttg
tgtctttggt tgtacattat gagatcgtga cagggccagt aaccgtgtgt
101640tctctccttc accttcccaa ggtcacgctg gatcttcaga acagcacgga
aaagtttgga 101700gggtttctcc gctcagcctt ggatgttctt tctcagatac
tagagctggc cacactgcag 101760gacattggga aggtttgtgt cttgtttttt
ctccttgggt tgtggctggc acacttgatg 101820tgcgtcttct gggctgagtt
catctaggat ggagcctggt tctccagggt gcctccggga 101880gactcctccc
tgccccacgt gcttgcgtca caggacccaa gtctgactct gccttagcca
101940tgaagtttag ggggaagttt ctatttgtat tctatttttg tctgttatca
tgtattagct 102000tagacccagt ttagtttgga aaatcagtgg gtttcaaaat
gtgtttgtag agtcctttat 102060ttcttaactt gaccttttca agtggaaagg
ggcaaaacag acgggtaagg gggcggggcg 102120ggaggtgtga cttgctcttt
tgtgcctgag gaagtaacag agctggggtt gacagtcata 102180ttctctgaca
cagatagtct ctgacttatc tcacagaaag tcagcggcag agcctgagtt
102240aaaagtctcg tagattttct ttttcttttt tttggtggct aatttcagtt
ttatttatat 102300ttgtttattt atttattata ctttaagttc tgggttacat
gtgcagaatg tgcagttttg 102360ttacataggt atacacgtgc catgatggtt
tgctgcaccc atcaacccat cacctacatt 102420aggtatttct cctaatgtta
tccctccccc agtcccctca ctccccatgg gccccggtgt 102480gtgatgttct
cctccctgtg cccatgtgtt ctcattgttc aatttccact tgtgagtgag
102540aacatgcggt gtttggtttt ctgatcttgt gatagtttgc tgagaatgat
ggtttccagc 102600atcatccatg tgcctgcaaa ggacatgaac tcatcctttt
ttatggctgt atagtattcc 102660atggtgtata tgtgccacat tttcttaatc
cagtctatca ttgatggaca ttcgggttgg 102720ttccaagtct ttgctattgt
gactagtgcc acaataaaca tacatgtgca tgtgtcttta 102780tcgtagaatg
atttataatc ctttgggtat atgcccagta atgggattgc tgggtcaaat
102840ggtatttcta gttctagacc tttgaggaat cgccagactg tcttccacaa
tagttgaact 102900aatttacact cccaccaaca gtgtaaaagt gttcctattt
ttccacaacc tctccagcat 102960ctgttgtttc gtgacttttt aacgatcgcc
atcctaactg gcgtgagatg gtatctcatt 103020gtgattttga tctgcatttc
tctaatgacc agtggtgatg agcatttttt cgtatgtctg 103080ttggctgcat
aaatgtcttc ttttgcgaag tgtctgttca tatcctttgt ccattttttg
103140atggggttgt ttgctttttt ttcgtaaatt tgtttaagtt ctttgtagat
tctggatgtt 103200aatcttttgt cagatgggta gattgcaaaa attttatccc
attctgtagg ttgcctgttc 103260actctgatga tagtttcttt tgctatgcag
aagctcttta gtttaattag atcccgtttg 103320tcaattttgg cttttgttgc
cattgctttt ggtgttttag acatgaagtc tttgcctatg 103380cctatgtcct
gaatgttatg gcccaggttt tcttctagga tttttatggt cctaggtctt
103440atgtttaagt ctttgatcca tcttgagttg atttttgtgt aaggtataag
gaaggggtcc 103500agtttcagtt ttctgcatgt ggctagccag ttttcccaac
accatttatt aaatagggaa 103560tcttttcccc attgcttatg tgtgtcaggt
ttgtcaaaga tcagatgatt gtagatgtgt 103620ggtggtattt ctgaggcctc
tgttctgttc cattggtcta tatatctgtt ttggtaccag 103680taccatgcag
ttttggttac tgtagtgttg tagtatagtt tgaagtcagg tagtgtgatg
103740cctccagctt tgttcttcta gcccaggatt gtcttggcta tgcaggctct
tttttggttc 103800catatgaagt ttaaaatagt tttttccaat tctgtgaaga
aagtcagtga tagcttgatg 103860gggggatagc attgaatcta taaattactt
tgggcagcaa ggccattttc acgatattga 103920ttcgtcctat ccatgaacat
ggaatgtttt tctatttgtt tgtgtcctct cttatttcct 103980tgagcagtgg
tttgtagttc tccttgaaga ggtccttcac atcccttgta agttgtcttc
104040ctaggtgttt cattccctta gtagcatttg tgaatgggag ttcactcatg
atttggctct 104100ctgtttgtct gttattggtg tataggaatg cttgtgattt
ttgcacattg attttgtatc 104160ctgagacttt gctgaagttg ctaatcagct
taaggagatt ttgagctgaa ccaatagggt 104220tttctaaata tacaatcatg
tcatctgcaa acagggacag ttttacttcc tctcttccta 104280tttgaatacc
ctttattgct ttctcttgcc tgattgcgct ggccagaact tccaatacta
104340tgttgaatag gagtggtgag agagggcatc cttgtcttgt gccggttttc
gaagggaatg 104400cttccagttt ttgcccattc agtatgatat tagctgtggg
tttgtcataa atagctctta 104460ctatgttgag atacgttcca tcgataccta
gtttattgag agtttttagc atgaaaggct 104520gttgaatttt gtcaaaggcc
ttttctgcat ctgttgagat aatcatatgg tttttgttgt 104580tggttctgtt
tatgtgatgg attacgttta ttgatttgcg tatgttgaac cagccttgca
104640ttccagggat gaagctgact tgattgtggt ggataagctt tttgatgtgc
tgctggattc 104700agtttgccag tattttattg aggattttca catcgatgtt
catcagggat attggcctaa 104760aattctcttt ttttgttgtg tctctgccag
gctttggtat caggatgatg ctggcctcat 104820aaaatgagtt agggaggatt
ctctcttttt ctattgattg gaatagtttc agaaggaatg 104880gtaccatctc
ctctttgtac ctctggtaga attcggctgt gaatccatcc tggacttttt
104940ttggttagta ggctattaac tattgcctca agtttagaac ctgttatcag
tctattcaga 105000gattcagctt ttttctggtt tagtcttggg agggtgtatg
tgtccaggaa tttatccatt 105060tcttctagat tttctagttt atttgggtag
agatgtttat agtattctct gatggtagtt 105120tgtatttctg tgggatcggt
ggtgatatcc cctttatcgt ttttattgag tctatttgat 105180tcttctctct
tttcttcttt attagtcttg ctagcggtct acctatttta ttgatctttt
105240caaaaaacca gcacctggat tcattgattt tttttggagg gttttttttc
gtgtctctat 105300ctccttcagt tctgctctga tcttagttat tttttgtctt
ctgctagctt ttgaatttgt 105360ttgctcttgc ttttctagtt cttttaattg
tgatgttagg
gtgttaattt tagatctttt 105420ctgctttctc ttgtgggcat ttagtgctat
aaatttccct ctacacactg ctttaaatgt 105480gtcccagaga ttctggtatg
ttgtgtcttc gttctcattg gtttccaaga aaatttttat 105540ttctgccttc
atttcgttat ttacccagta gtcattcaag agcaggttgt tcagtttcca
105600tgtagttgtg tggttttgag tgagattctc aatcctgagt tctaatttga
ttgcactgtg 105660gtctgacaga cagtttgttg tgatttctgt tcttttacat
ttgctgagga gtgttttact 105720tccaactatg tggtcagttt tagaataagt
gcaatgtggt gctgagaaga atgtatgttc 105780tgttgatttg gggtgcagag
ttctgtagat gtctattagg tccgcttggt ccagtgctga 105840gttcaagtcc
tggatatcct tgttaatttt ctggctcatt gatctgccta atattgacag
105900tggggtgtta aagtctccca ctattaccgg gtgggagtct ctttgtaggt
ctctaagaac 105960ttgcttcatg aatctgggtg ctcctgtatt gggggcgtgt
atatttagga tagttagctc 106020ttcttgttga attgatccct ttaccattat
gtaatggcct tctttgtctc ctttgaactt 106080tgttgattta aagtctgttt
tatcagagac taggattgca atccctgctt tttttttgct 106140ttccatttgc
ttgttagatc ttcctccatc cctttatttt gagccaatga gtgtctttgc
106200atgtgagatg ggtctcctga atacagcaca ccaatgggtc ttgactcttt
atccaatttg 106260ccagtctgtg tcttttaatt ggggcattta gcccatttac
atttaaggtt aatattgcta 106320tgtgtgaatt tgatcctgtc attatgatcc
tagttggtta ttttgcccgt taactgatgc 106380agtttcttca tagcgtcagt
agtctttaca atttggcatg tttttgcagt ggctggtact 106440ggttgttcct
ttccatgttt agtgcttcct tcaggagctc ttgtaaggca ggcctggtgg
106500tgacaaaatc tctgcatttg cttgtctgta aaggatttta tttctcgttc
acttatgaag 106560cttagtttgg ctggatatga aattctgggt tgaaaatact
ttttttaaag aatgttgaat 106620attggctccc actcttttct ggcttgtagg
atttctgcag agagatctgc tgttagtctg 106680atgggcttcc ctttgtgggt
aacccgacct ttctctctgg ctgccctttc cttcatttca 106740atcttggtgg
atctgatgat tatgtgtctt ggggttgctc ttctcgagga gtatctttgt
106800ggtgttctct gtatttcctg aatttgaatg ttggtctgcc ttgctaggtt
ggggaagttc 106860tcctggataa tatcctgaag agtgttttct aacttggttc
tattctcccc atcactttca 106920ggtacaccaa tcaaacgtag atttggtctt
ttcacatagt cccatatttc ttggaggctt 106980ggttcatttc ttttcactct
tttttctcta atcttgtctt ctcgctttat ttcattaatt 107040tgatcttcaa
tcactgatat cctttcttct gcttgattga atcggctgtc gaagcttgtg
107100tatacttcac aaaattctcg ttctgtggtt tttagctcca tcaggtcatt
taagctcttc 107160tctacactgg ttattctagc cattagtcta acattttttt
caaggttttt agcttccttg 107220tgatgggtta gaacatgctc ctttagctcg
gagaagtttg ttattaccga ccttctgaag 107280cctacttctg tcaattcatc
aaactcattc tccatccagt tttgttccct tgctggtgag 107340gagttgtgat
cctttggagg agaagaggtg ttctggtttt tggaattttc agcctttctg
107400ctatggtttc tccccatcat tgtggtttta tctacctttg gtctttgatg
ttggtgacct 107460acggatgggg ttttggtgtg ggtgtccttt ttgttgatgt
tgatgctatt cctttctgtt 107520tgttagtttt ccttctaaca gacaggcccc
tcagctgcag gtctgttgga gtttgctgga 107580ggtccactcc aggccctgtt
tgcctgggca tcaccagcag aggctgcaga acagcaaata 107640ttgctgcctg
atccttcctc tggaaacatc gtcccagagc acgaaggtgt ctgcctgtat
107700gaggtgtttg ttggccccta ctgggaggtg tctcccagtc aggctacatg
ggggtcaggg 107760acccacttga ggcagtctgt tcattatcgg agcttgaatg
ccgtaccggg agaaccactg 107820ctctcttcag agctgtcagg cacgtatgtt
taaatctgga gaagctgtct gctgcctttt 107880gttcagatgt gcccttcccc
cagaggtgga atctagagag gcagtaggcc ttgctgagct 107940gcagtgggct
ctgcccagtt cgagcttccc tgctgctttg tttacactgt gagcatagaa
108000ccacctactc tagcctcagc agtggtggac acccctcccc cagccaagct
cctgcatccc 108060aggtcgattt cagagtgctg cgctagcagt gagcaaggcc
ccatgggcgt gggacccgct 108120gagccaggca caggagagaa tctcctggtc
tgctggttgt gaagactgtg ggaaaagtgc 108180agtatttggg caggagtgta
ctgctccttc aggtacagtc actcatggct tcctttggct 108240tggaaaggga
agtcccccga ccccttgtgc ttcccaggtg aggcaacacc ccgccctgct
108300tcggcttgcc ctccgtgggc tgcacccact gtccagcaag tcccagtgag
atgaactagg 108360tacctcagtt ggaaatgcag aaatcacctg tcttctgtgt
cgatctcact gggagctgta 108420gactggagct gttcctattc ggccattttg
gaagcatccc ttgttttttg aggtggagtc 108480ttgctctgtc gcccaggctg
acgtgcatcg gcacaatctc ggcccactgc aacctttgcc 108540tcctggtttc
aagcgattct cctacctcag cctccggagt agctgggatt acaggcacct
108600gccaccatgc ctggctaatt ttttgtattt ttagtggaga tggggtttca
ccacattggc 108660caggctagtc tcgaactcct gaccttgtga tccacccacc
tcagcctcct agagtgctgg 108720gatcacaggt gtcagccacc acgcccagcc
atattttcag atctccctct ctttgcccta 108780aaccactgtg cttaataagt
agtttttagt ggccagcagt ctccatgtat aacacatttt 108840agcaaaatgg
aaaatactat atgttttaaa tttgaacgtg agattatact gaaataaaaa
108900tcatctaact gggattcttt aaatagtaag attttctttt ttgtatgtgg
gttttttttt 108960aaccttatta ttatgactgt catatataga aatggctgtt
tttcagttac agtcagtgaa 109020tgtatcaaat gctgccttat ccaaataata
aaagtaaatt attaataagt cacaatttaa 109080tgaagattga tgttagttga
tctttatatt cttgaaatca gccatatggt tgtgtgtgta 109140tgtatatatt
tttaaaggta cataaagata ataagctcat ctctgaaaat ttttacattt
109200ggcataagaa taactggata attaagcatc ttattctctg gcctgtgtct
ttacagttaa 109260aggtagattt actcacctct ccttttttgt ttttctaagt
tcatcttttt tgctgtttca 109320agacagaggc ccattttagc tttctcgcat
atccttttgt ttgtactttg gaagcctcac 109380ctgcttaatt gttgagtttt
tatccgtggt cttttagagg gggatatgta gggtagaagc 109440tttcacaggt
tcttgtttgc acttggcccc tgactgtttt gaggaatctc cctcactgac
109500tcacagcatg gcaaggtttc agatctcttt ctgccacaca gcagttctga
ggcagctgga 109560aagatatcca gatgcttaga ttgtcaggcc aggcttgaga
tatacaaact attgagcctt 109620atctgtgacc ttgcttaggt gaaggcatca
gagcccctgc accaacatgc ataggcctct 109680gcatgtgtgc ggggctgggt
gttgaggtct gagcacaagt gtagctggag aggtgagctt 109740gatgtggcga
cgggtatgag caggttttct tcagacttct gtgagtttac ctagttccag
109800gatttaaagg cacagagact ttagaattaa aatagaatca ttttcttttt
ctaaatagca 109860acactaggaa taaaaaataa taattccaca ttcttgacag
gtaatgtttt ttcttgtctt 109920ctaatcctta tttattccat actcattttt
atacataatt gaaatgtatt atgcattgga 109980tttttctttt gcattatatt
atagacgatt tttcatgtaa ctccttactg ttccatttta 110040tatgttttgt
ctggtttaag actttatctg caaaccggga aactgtctct acaaaaagaa
110100aaacaaaaat agttggccgc agtggcatgc gtctgtggtc ccagctactc
ggggctgagg 110160tgggaggatt gcttgagcct tgggaggttg aggctgcaaa
gagccatgat catgccattg 110220cactccagca tgggtgacag actttatact
gtctgttttg ggtgatttga taatgatatg 110280ccctgatgta gtttttttat
atcttgtgtt tcttgtgcct gggtttattg aggttgggtc 110340tgtggcttca
tagtattttt aaagtttgga aaattttagg ccattctttc tttctttctt
110400tctttttttt ttttttgaga cagtgtctcg ctctgtcgcc tgcgttggag
tgcagtgaca 110460ctatcttggc tcactgcaag ctctgcctcc tgggttcacg
ccattctcct gcctcagcct 110520cctgagtagc tgggactaca ggcgcctgcc
accacgcctg gctaattttt tgtattttta 110580gtagagacga ggtttcactg
tgttagccag gatggtctca atctcctgac ctcgtgatct 110640gcccgcctgg
gcctcccaaa gtgctgggat tacaggcgtg agccactgca cccagctagg
110700ccattatttc ttcaaagatt ttttttctgc cctgcctccc tccttttttc
cctctcttaa 110760aggggctgtg atttcctgaa tgattgctta gtgttgtccc
atagcttact gatgctcttt 110820tcagtgtttg attgttttat gtgttttctg
ttttgtatag tttctattat tgtgttttca 110880agttctctga tcttttcttc
tacagtgtct actctgttgt taatctgtta atctgttgtt 110940aatcctgtcc
agcgtatttt tttttttgtt tttgaaacag tctcactctg ttgcccaggc
111000tggagtttag tggtgcgata tcagctcact gcaacctcca cctcccaggc
tcaagcaatt 111060cttctgcctc agcctcccga gtagctggga ctataggcac
gtgccaccac acctggctaa 111120tttgtgtatt tttattagag atggggtttc
accatgttgg ccaaactggc cttgaactcc 111180tgacctcagg tgattcatcc
gcctcggtct cccaaagtgt tgggattata ggcatgagcc 111240accgtgtctg
gcccctgttc agtgtatatc actaattttg tttttatctc tagaagtttg
111300atttaggtct tttaaaaatg tctccctgtg tttctgttta gctttgtgaa
cacaattgta 111360ataactgttt taatatcctt ctctgctagt tctaagatct
tctaataact tcccagttct 111420tggtgtttct cattggttga ttgatactcc
tcgttttggg ttgtattttc ctgcctcttt 111480gtatggctgc caatttttta
ttggatgccc aaccttgtga attttacttt gttggatgct 111540atatattttt
gtgttcccat agatcttctt gagctttgtt ctgaggttag ttgagttaca
111600tatagatggt ttactctttt gggtcttgct ttataatttg tcagatgggt
tggagcagtg 111660cttagtttag gactaatttt ttttttggac taattattcc
tctttaggaa taattaggta 111720ccatgcttag gaggcaagac catcctgagt
actctaccta atgaaccaga aagtttgggt 111780tttccagtcc gcctgctgag
aacagtgact ttctagccct gtgtgagcgc tgagctctgc 111840tccttctaat
cctttccaat gcttctttcc ctggcctcag ggagttttct cacacacata
111900tctctgctga gtactcgaga gggaccttcc ccagatctcc agagctctct
ctgtcttgtt 111960ttctcttctc tggtgctctg tcttatgaac tgtggctgtc
ttggtctcct tagattctca 112020gcacctcttc aattcagagg gttgcctgtc
cctcctcctt gtgccacagc ctaggaactc 112080tctcaaagca gcgagttggg
gcagccatag ggctgactta gtctctcgtc tcccagggat 112140cactgtcctt
cattgctcat gtccagtgtc ttgaggactc tgggttttgt ctgttttgtt
112200ttttggtttg ctttggttgt ctcaggcagg agggtaaacc cagtccctca
ccctcattgt 112260gctcagtagt ggaagtctca ctctattaca ttagatatta
gtatttgtag cagagccctg 112320gttccctggt acttggggag ctcttgaaag
gccagaaaca gcatgctttc tcaccttttc 112380cagggcttca gtttctggtg
cacatcaagc attccataca catttgttaa agtcctttgt 112440tagacaagta
gtgattcaca ggttctattt gtaatttttt cagttaacat gtattgggta
112500tctgctggga gctagtaaaa acaaaaagtg gtgtgtgaca aattcaattc
tgacaagaac 112560aaccttaaac acttagaata tactttgagc atatcagaat
tttaaaaatg tgtggccctt 112620gagtatttga aaccaacaag aatctattgc
ttattagtag aggatatttt gttaaacaag 112680tggagagaga ggcattttca
gtctaattgg tgttggcttt tagcagctga tggaaaccag 112740ttcgtgatta
gccaggcagt ggtgaaacag gctgtgcatt ctgaatgcct aggtatctag
112800gcattcagaa tggtggcgct ctttgagtta gcatcttctt ctttcttgat
tctttttttt 112860ttttttttga gatggacttt cgctcttgtt gcccaggtaa
caactccagt gcaatggcgc 112920catctcggct cactgtaacc tctgcctccc
tggttcaagc gattctcctg cctcagcctc 112980tcaagtagct gggattacag
gtgtgcgcca ccacgcctgg ctaattttgt atttttggta 113040gagatggggt
ttcactatat tggtcaggct ggtcttgaac tcctgacctc aagtgatgca
113100cctgcctcga tctcccaaaa tgctgggatt acaggcgtga gccaccactc
ccagcccctt 113160cttgattctt gaaaaggaca ttgggtgctg tacatctcgt
tatagatgtt gataaaaatg 113220cttgtgagaa gagtaacatt aaggtagtta
tttggtcatt tttgcagatt attttaagac 113280aattctagga ctgatttgtg
gtaaatcaca cattgctgta tcatagttgt gttcactgaa 113340catattcagg
ggctctacag atgcagggct cttagctgct ttgcacactt ctgaattcct
113400gccctgcgaa caggactgga tacctaatag acaacaggta cttgataaca
gtttattgaa 113460ttaatgagtg aatgaacaga tacataaatg catgaaagaa
tggttgtaat gtatataact 113520tggatttcaa gactttttac tgactgttca
aaataagaaa ttgaaaactt tcctctgatt 113580ttcctctact atttacacaa
tttaaatgga agttatcttg taccttcaat ttctgtctag 113640gattcgtaca
ataacgggtc atctctgagt cgcttaatgt ctcacttgtc tttctacagt
113700gtgttgaaga gatcctagga tacctgaaat cctgctttag tcgagaacca
atgatggcaa 113760ctgtttgtgt tcaacaagta agagcttcat tcttttcctc
ttctgttaag acgttcgggt 113820atgacagcaa aacgctgcta ctccttaaga
ggcaggcgct gttggcataa tcagctggga 113880ggattgtggg gtccagcgca
gcactttttg gctcagtcca tgattgagcc aagaggccat 113940ccttcccttc
actccccagg aggacgaggt ctgtcactgt ggagggcaga ggacaccaga
114000agctcctctg caacctcgct agttaacttc cagtccctcg gagtttctgt
ttagaatgct 114060caatctcatt tagaattgca aggaaaccca aaacgcctat
ttaaggtaca aacagcactt 114120catacaatat ctcatgaggt attaatagtg
attcacagga agaatttcac gctgtgagtc 114180tttgctaaca tatccagtta
tttacagatg gatttgatat ttgtgtggga gattcttaaa 114240agtgttgttc
acgccacatt gttgatgcct catttttttc actgtagttg ttgaagactc
114300tctttggcac aaacttggcc tcccagtttg atggcttatc ttccaacccc
agcaagtcac 114360aaggccgagc acagcgcctt ggctcctcca gtgtgaggcc
aggcttgtac cactactgct 114420tcatggcccc gtacacccac ttcacccagg
ccctcgctga cgccagcctg aggaacatgg 114480tgcaggcgga gcaggagaac
gacacctcgg ggtaacagtt gtggcaagaa tgctgtcgtt 114540ggtggaagca
cgaaagagca agcaggaaat actttgtaaa agaataaaaa cgaaaaatgt
114600tagcgaacat cttctaatag tctgctgtat tcagagaact ctaggagata
tatatggttg 114660atgcaaagat gatttaaggc atagcccggc cttccaagaa
gtgtgtggcc agtgagtgag 114720atgggcttgg gacttacaca tctcagaggt
gggggtagag gaggaggaac actgagtggg 114780ctgagaagca gccagctctc
attgccaaag tgtgtcagca aaccagaatg cagttcataa 114840tgtccccacc
cattcaaagc acaggacctg tagagtggtg tggcatgtgt tggtggcact
114900tttcaggcct gtaacaagga tgaaagaaca gcttcatagc agcacagtag
tgctggtgtt 114960cagaggtgtg tgaaggccat agaagcatct tggatatatt
accttgtgtt ttgtcagctt 115020tatgactaga agtctctttt cacttaaatt
tgtttttttt ttttttgaga cggagtcttg 115080ctctgtcgcc caggctggag
tgcagtggtg caatctcagc tcactgcaag ctctgcatcc 115140tgggttcatg
ccattctcct gcctcagcct cccgagtagc tgggactaca ggcgcctgcc
115200atcacgcctg gctaactttt ttttgtattt ttagtagaga cggggtttca
ccatgttagc 115260caggatggtc tcgatctcct gacctcgtga tctgcccgtc
ccggcctccc aaagtgctgg 115320gattacaggc gtgagccacc gcgcccggcc
tcttttcact taaatttatg tttgtgtttt 115380taatgcctag tatacaggac
ttcttaaatt gccttaagta tgaacaggta tttgagttgc 115440taatctgtat
agtagcaata atagaatccc ttgtttttcc ttttataaat ttagcgatta
115500aatagctaca attaaaacac tagagtcagg agtcaaggaa aatacccatg
ttccaggctg 115560tatgttagtg atgtacttac tatatattgg agtttcagga
gtaagtctgt ttcaatgctt 115620tctgtaacca tttggggtat taataagcat
gtgagtgtgt gcatgtttgg gttaatttca 115680tatatgtttc ttagaaggga
tatcattgat gtaaatattt taaaggcttg tcctccaaaa 115740aaatcatgta
atttcttcta aattactgat cttttaaatg accttcacct ttctctcaaa
115800tctcacttaa gactgggctg agtagtcagt ttcctgtagc agaaaaaagc
tcagacttga 115860gtagccttct gcgagtgagg agacttgatg gctgtcaggc
agctgtaaac tctaaataga 115920gtgtcattat ctgaagaggg cgatgctgcc
acactgagtg gcctttcaag ttgtttctca 115980atctgacacg ttctgatcgt
gtgaatgtga aattggtttg agcaggagta tatctgagtg 116040cagaggagat
tatttaaaga tattctcatt ctctgcttcc cttttattcc catttggcag
116100atggtttgat gtcctccaga aagtgtctac ccagttgaag acaaacctca
cgagtgtcac 116160aaagaaccgt gcagataagg taaatggtgc cgtttgtggc
atgtgaactc aggcgtgtca 116220gtgctagaga ggaaactgga gctgagactt
tccaggtatt ttgcttgaag cttttagttg 116280aaggcttact tatggattct
ttctttcttt ttttcttttt tatagaatgc tattcataat 116340cacattcgtt
tgtttgaacc tcttgttata aaagctttaa aacagtacac gactacaaca
116400tgtgtgcagt tacagaagca ggttttagat ttgctggcgc agctggttca
gttacgggtt 116460aattactgtc ttctggattc agatcaggtt tgtcactttt
atctttcatc catcatacct 116520gttcctaatt tagtacaaat taccctaaaa
gacactgaaa tctactttaa agaaatgtgg 116580tctgcatgtt tccctcatca
gttgctgctg cttatctttt tcatgcacct agctggtgca 116640gaaggcctgg
ggcatagcca gcctcagcaa gtcagcatcc ttgccccagc tccctggact
116700caaggctaac ctggggttgg ctgttaggga tttccaaagg tttgtcccat
ccacttgcct 116760cccctccaaa ataagtttga atttaaattg tgagatacaa
ttaagattta ttgtttgggg 116820aacatttttg caaaatctag agttagttta
aacagattat caattattac cataattgat 116880catctgcagt ttcaagctat
ctaacaggtt cacttacctc tttaaaaagg aatggaattt 116940agcaggacag
taactgagac ccgtgctcct ggagtccatg tgggagctgt gtggctctgc
117000acaagcattt gcacgcttcc cctcttgact gcattacctt cctcctatag
ttgctgtggg 117060caccagattc tggctagtcc tgtcccttca tgatgcacat
tttcctcaag attcgtccca 117120gttaaatcac tgcagatgaa actgcctttt
catcgtcaaa atttaactgt catttttgag 117180ccgtgatctt gggctacttt
cttatgtggg gtaggaatat ttgtgagtta gaaatattac 117240acttctctat
ttccttctag acgtaaatct gttaatcctg tcagcactgt tactcacctg
117300aaagggtctg tttccctagg agaactgagg gcactcggtc aacactgatt
ttccacagtg 117360ggtattgggg tggtatctgc ttgttttttt tgttgttgtt
gtttgttttt ttttgttttt 117420tttttgagat ggagtctcgc tctgtcaccc
aggctggagt gcaggggtgc gatctcggct 117480cactgccagc tccgcctcag
aggttcacgc cattctcctg cctcagcctc ccgagtagct 117540gggactacag
gcacccacca ctacgccagg ctaatttttt gtatttttag tagagacgag
117600gtttcactgt gttagccagg atggtctcca tctcctgacc tcgtgatctg
cccgcctcgg 117660cctcccaaag tgctgggatg acaggcgtga gccaccgcgc
ccggcctggg gtctgctttt 117720aatgaaggag gcatcaaggg gtgggctttg
cgttggcctg atgctttcat ctttctttca 117780caaaacctgt ccgaagaaaa
tccgtctaaa tgggccattg ctctcctcag gaaatagtca 117840ttgggaactt
cttttccttt cctttgacac taggaggctg actggggaga agccctggtc
117900tatggctgtg ggcagcaggg gctgagagga gcaggctctc aggggggcac
gggtacccca 117960agggaagcca gagccctgat ttgttccatt ctagtaagaa
caaagactgc tctggtttca 118020tgtttgttct gattgccttt catcaaccgg
tcccctttct cccagttctt aagattcagt 118080acagtgacag ttttatgaac
aagaatagaa cactagaaca gacaaaccat tgaactctat 118140gctgataaag
atttattgag ctcctgctgt atgtttgcat tctgcccaga ggctctgaga
118200aaaccaggcc atatgctcca tgctttatcc atggaagctc cccgtcaggt
tgggaaagct 118260gacagctgca gggaatacag tgtgacacaa aactggctcc
catgcagccc ttacgtgtcg 118320cctctcagat ggttggggga cgaaggtcga
ctcctttggg tatcttatta ctaaaccagt 118380ttcagggaat ctgtgccacc
ctatctgcca ttaacgtgaa cagatgagtc cccaaggtgt 118440aattttgggt
attgtctgat gtctcttgga atttattatt tgtttttcca atgagatttc
118500acctcagggt atagtaaagt tgttgagggg attcctggat gtgttctgca
attatctagg 118560ctgatttcag aatagagtta tgcttatagt caaatttatc
agctgtcaag aattttattt 118620aaaatttatg cagataagca ggaggaaaag
aagcctggtt tttacatttt aatcctatta 118680ttgatgtgaa attttatttt
ccttcctgta ggtgtttatt ggctttgtat tgaaacagtt 118740tgaatacatt
gaagtgggcc agttcaggta atagcatttt attattttag atttttttct
118800tcttcttgtg tacttacatg taatttaggt tattaagtga atgtttaaac
tactgttagg 118860catttttgct gttttcttta aatggaaatc tgactaacat
actgtgcatt tttgcttctc 118920ttaaaaatta atgtatatct caagacttgt
ttggaagtag ttatgtatct gaaaattcca 118980tatgttgtca gtattcattg
cacatttcaa agcatttaat tgtgttgaca gatggtggaa 119040tgaaatcttg
tggtggagca ctagttttta aatcttctta gagaaagcag ttttatataa
119100tgttgtcttt agtaattatt atgcatttgt attctctgca gctttttctt
gctagatgtt 119160gaggttttaa tacttcttgc tagtccatta caggtttata
attattaaaa gttaaaattc 119220ttttagtacc taaaatgctt aataaacatt
gtaattagga aaatttagtg cagaaggaaa 119280gtgttcccag attccctggg
gtctggaaac atagtgttta ttctaattac atgacacctc 119340cactgtgttt
tggggcaagt tactgtttct cttttgagtt tcaatttctt caagagcaaa
119400gaggcagagg agagctagga agatcgtagc tgctgtgccc ctgtgccgtc
gggtgccttc 119460tacctgctgc ctccgaacct ttacacatgt ccctgctctg
cgcgagggca cagatgggat 119520gcactgtggc aggggtgggg ttagagtaga
tcacggacac ctgttagctt gatgtgtgct 119580tgctgtcaag gttgaatcat
gaattatttt atgttgctta tattgatatg tatcttaatt 119640ttaaaagaaa
ggtctaaatg gatgtttttg tttttaggga atcagaggca atcattccaa
119700acatcttttt cttcttggta ttactatctt atgaacgcta tcattcaaaa
cagatcattg 119760gaattcctaa aatcattcag ctctgtgatg gcatcatggc
cagtggaagg aaggctgtga 119820cacatggtaa cgggacacac ctttcactgt
cgtcttcggt gtcgtgatgt gcttggcagt 119880gttcgttttc atatacccac
tttgaacgtt gtcagtggca gccatgtgct tctcaggctc 119940tgcatgtgtg
tctgtgtatg tgaaggtact ggttagagac gtttcaaaag agaagagagc
120000atattcttta ctctcagcaa tttgtaatct tctcagggaa aaaaattcaa
gaaacagtaa 120060gataacctaa ggtacagata gattctgaat ataaagttcc
tgttcattca catgaaacgc 120120taaaagttct tcacttgatc ttagccaaaa
ggccaagaag cgatgcaaca ctaaaaattc 120180ttaaatcgaa cttgccgtga
attaaatttt gatctctcat ccagtggtat tggagatata 120240gtttgacttg
ggttcagggc tttctgtttt gcctgatgat tttgctggag cttaaataag
120300gaacccagga gatggccagc tgtgcaagcc cccagcctgt ggaaggagct
agtgtggttt 120360tatgaatgag ttgcaaatct ttctttgagc tttttgaact
gatcttccag cattgcccta 120420ttgacccctc cctgactcct ttgctggaat
ctgtaggctt
ttgaactttg acagggacac 120480atcctaagac ccttgcaaac tcccagatgt
gagaatggca ctactactta gagtcttttc 120540gactcagcgt gtgtgcagaa
gagcatcaac cgggctgtgt tgcgaggcag ggccttggct 120600gacctctcag
tgtttacata gctaagccag ttagtgtttg ccacggcctc acaagggctt
120660cagattcaca cagccaaagt atagattatt aaaggcatag gtgtttggtt
tcctggactt 120720ggagggtctt tggacagaaa atcagtaggc aaccacaccc
agtactttgt gctgggaagc 120780ttggtcatct gtgagagggt cagagagtat
acccatgcgt gcatgccacc gaagggtcag 120840tgagtattcc tgtgtgtgca
tgtctcaggg ccggagagag tatgtgtcac tgagaggtca 120900gagtgtttgt
gtgtgtgtca aagagggttg cattgtgccc ttcactgagg ggtcagaggg
120960tgcctcgcgt gtgtgtgtgt gtacgtgtgt gtgtgtcact gaggggtcag
agtgtgcctg 121020tgtgtgtgct tgtgtgtgcg tacatgtcac tgaggggtca
gagtgtgcct ctgtgtgtgt 121080gctcatgtgt gtgcatacgt gtcactgagg
ggtcagagtg tgcctctgtg tgtgctcatt 121140tgtgagcgta tgtgtcactg
agggggtcag agtgtgcctc tgtgtgtgtg ctcatgtgtg 121200agcgtatgtg
tcactgaggg ggtcagagtg tgcctctgtg tgtgtgctca tgtgtgagcg
121260tatgtgtcac tgaggggtca gtgttcctat gtgctcatga cattgagggt
cagagtgtgc 121320ctgtgtgcca atgaaaggca tttcttatat ttttttatat
gtggtcatag tagaccagtt 121380aatttatttt gactcctgtg ttagaccaaa
ataagacttg ggggaaagtc ccttatctat 121440ctaatgacag agtgagttta
cttaaaaaag cataataatc cagtggcttt gactaaatgt 121500attatgtgga
agtctttatt gtcttttcag atgaatcaag tagattattc ttgagaccag
121560gaatgttgct gttttggtta tttggaaagt tttatcattt tcaaattgac
ttttgaattt 121620gagtcacctt ttttcagaag tggtgttaaa ttataggagc
cctaggtttt ttttcttttt 121680ttagaagtca tcacaaaatg atcagtgttc
agaggaagag ctttgacctt ccacatggta 121740taatgattga taaccttaat
tcatctctta ccataaacca agtatgtgta agggttttct 121800ttatttcttg
aaagcatttt gtagatgttg agagcagttt tccaaatgta atttccatga
121860aatgcctgat aagggtaccc ttttgtcccc acagccatac cggctctgca
gcccatagtc 121920cacgacctct ttgtattaag aggaacaaat aaagctgatg
caggaaaaga gcttgaaacc 121980caaaaagagg tggtggtgtc aatgttactg
agactcatcc agtaccatca ggtaagagga 122040atgtatgttg gaactgtcgt
ggatacttta ttgacccgtg cagatggaag gaagtgccat 122100gtggtaacgc
tcactgttaa ctgtgttact ttgaaccagg tttgggcttt ctggggcctg
122160ggtagatgcc ggtgcagggg gatggggagg gaggcggggg gtgggggggt
gtggtggagt 122220tggggaggtg cagtggcagg aggtgttgtt ggtgtgtatc
cttttttttt ttttgagatg 122280gagtctctct ccgtcgccca ggctggagtg
tggtggcacg atcttggctc attgcaagct 122340ccacctcccg ggtttaagca
attctcctgc ctccacctcc cgagtagctg ggattacagg 122400catgcaccac
catgcccagc aaattttttt ttttgtattt ttagtagaga tggggtttca
122460ccatgatggc caagctgttt cgaactcctg acctcaagtg atcctcctgc
cttggcctcc 122520caaagtgcta ggattacagg cgtgagccac catgcccagc
ctggtgttta tctttaaagt 122580gggcacagcc acaggagttc acctgactcc
tggtctgaga gtcacgagat cgttcaagat 122640agtgaggccc tcttttccaa
aacgaggacc aaaaatcaat tgacagtgtt ggtcaagatg 122700gtagaaacct
taaaatgata gaaatctcaa ctctgaaata aaaactttat ttgtatattt
122760atttaccact attttgacat agggctaagg tctttttctt tgagctgatt
tctggttttg 122820ttttcttaaa gtggcataag aattcaaaga cattttgagg
aaggctgagt gcagaaatct 122880ctctttttaa atgacttctc ctttctttta
acttgcactg ttgtctagcc ctcacttatt 122940ttgtcaattc tttttagctg
tttgtctttg aatcttcata aagccatagc ttttctcata 123000agaagcagca
ctttctttgt tcattcatat tttaatgaac ccctgtagta tttaattaaa
123060tacttaatgc ctaattaaat cacataattg caatgcaaaa gtacatgtat
cataaagagg 123120tctgaaaatg agcaactggc aagcaggtgg tggcaggcag
agctgcttgg gtgggtgggt 123180gtcatggaga ggagttcatc agccacatgt
tcagtgagct ctggatatgt ctgtttagaa 123240atgatcacta ataaacttgt
gctcaaccat gtatacctct gggaagcagg tgctcttcag 123300tagattgcct
ctgcagagaa cacagaattg aagtgaatgt ccacaaaggc aatgagccac
123360ctgcagaata gtttagtcaa ggctgtgttt gaagtttgcc aaagattaat
atacatttga 123420ttttcatgtt gtgccttttc tctgattgtg aaatattaca
aattctatac aaataacaat 123480gatggcaaat cctcctgagc aaagtgtgca
ccttgtatgt gccctagagg aacttgtgtt 123540tcgttctgat tcccctacat
ttctcatgtc atagagtggg ggttgcatta gtgtccccct 123600gtcctcgctg
ggatcacatc tgtttggatc ctagagtctt ccagctgaac tgggacaagt
123660ataacagacg gacacgtagg ggtggaaagg cgtctcttgg cagcagactt
tctaattgtg 123720cacgctctta taggtgttgg agatgttcat tcttgtcctg
cagcagtgcc acaaggagaa 123780tgaagacaag tggaagcgac tgtctcgaca
gatagctgac atcatcctcc caatgttagc 123840caaacagcag gtttgtcccc
gcagccttgg cttgttgttg catagtgatg gtagcttaag 123900gtccttgtga
aaggtgggtg gctggaatca gctcttcctt cagtcctaat ctgtgccttg
123960atagcagttc tccgtgctag tcatgggaca gctgacttca tttcttctca
caatgccatc 124020tcaggttggt attgcccacc tactttacag gggggatccc
acagctccga gaggttatgg 124080aggtgatcag gcagcacaca gctttagagt
gctggggtga gggcgggcca aggctaactc 124140taaagcccga acccttacct
cctacactgc ctcctgcatt ctggtcaacc cagtgtttta 124200tttggtggtt
agatttttgt ttttgttacc ttactgcttg taatttagca gttttccttt
124260cctttccctt cctttccttt ccgacagggt ctcactctgt cacccaggct
agagtgcagt 124320cgtgtaatct cactgcaaca acctctgcct cccaggttca
accaattctc ccacctcagc 124380ctcctgagta gcaaggacca caggtgtgca
ccactacgcc tggctagttt tttgtatttt 124440tagtagagat gaggtctcgc
tgtgttgccc aggctggttt taaactcctg ggcgcaagtg 124500atccaccaac
cttggcctgc caaagtgctg gcattacagg tgtgagccac ctcgcctggc
124560ctattcatca ctaatcagaa tttctatgat caaatgacat gaatcattgt
ttccacaact 124620gcagtggaag gaaatggcct ggcagtgcca gtttcagaag
cagcctgccc ccagtcaggc 124680acaggccact gtgcccccag tgtagcagca
cctctgtagc tcacagagaa gggtggtggg 124740gacctccttg aggcagctct
gccagaaaat ctcatgagct gcctggcaca gcttgaggtt 124800gccttttaag
tggactcagc aaatacatgt ttgttcatct tgattataca caataaacaa
124860ctactctgta tagtacgagt agtccgtggt ttttggcatt tgatttaaac
ttagaggcat 124920gtgatattga tgttactgcc ttcatgactg cacccccatt
ctgatttcat aatggaatgt 124980tatcttgaga ccagttagac aacaggacag
ggatcttggc ttctggtgag attgacagca 125040gttttagtgt ggtcagggtc
tccctgccta cagatggttt tagaatggtg ccctggaagc 125100tttatcccat
tcttttctgt gcgtaatctg agtagagtgg agatcgaagg cctgaataca
125160tagtaaatac ctgacttaat atctgccgca atggaaattg tgtgatacaa
catttatgaa 125220acgcttagtg cagcacctgc caggtagctc accacaggtg
catgttgcat tcagaagtag 125280tgctagatac tatcctgtta ctggcagtgc
atacatcagt gatcaaagca gattaaagaa 125340agaccccctg ccttcttgga
gtgaagattt tgttgggatg cgggtaaggg gacagacaat 125400agaaaagcaa
gtgagtgaag tctataccat ggcggctgat caggaacacc gtacagaaga
125460atccaggagg gaagagagtt aggtggtgtc tgcggtggga gtggcattgt
tcagctggtg 125520atgagaagaa gctttggtga tctggtgaca tttgagtgaa
tttgcagaaa ggaaagatac 125580aagcctagga gatacctggg gaaggaacat
tccaggcaga gcaaatagca gtgcaaaggc 125640cctggcgggg ggcggacatg
ctgttagggt acaagcaatg agggtggagg agtggggcag 125700ccatggggag
ggaagggagt gaggcctggt ggggtgaggc cagtgtggag gagccttgag
125760agggtttgcg ctgatgtggt gtaggtttta gcaggatcat tcttattcct
gagttgagaa 125820tagccttgag ggggaggtga gggcagagca gggccaccca
tgtgagaccc ggcactggag 125880tggaatggcc caagtcagca tcccttggca
gcatgaaagc aaaaccagca aggtttgctg 125940gtggcttaga tgtggcatgt
gagagagagc agggctttgg gggtgatttc agggtgagga 126000cagggtggct
gtggacaagg tagggcagac attgggggca gcaggaggtc agagcctgtc
126060tggatgtagc agttgagacc ccataggtgc ctaatgaggt gaggccagca
tcaggtgtat 126120gagcctggag ttgtcgagag actgtggggc agggggtcag
catctgagat gtccactcac 126180agtggaccca gactggctgg agaggaggag
gagcttgaat accgagcctg ctgagtccca 126240gctccaaggt caggtaggtg
aggggagcca gtgctggggc agggggagta ggcaggtgtg 126300gggttcctaa
agccaagatt ttttttaagg cattttgtgc aggagggcga catctgctgt
126360cagcaccttg ggaacttggc ccaggtttgg cagcaccgag ggcactgatg
agtgcttttg 126420gaggagcaaa gggagccaaa ccctaatggg aatgtgttcc
tgaaaggaca ggagagagac 126480ttgggaaaag gttttacttg aagagggaac
ggagaaatag ggcagtagcc agaggaggag 126540aggagtcggc aatgggttaa
gttggcagaa atgaaggcct gtttacgcac tgagggcaga 126600agcaacaggg
aggatcagtt catgacacag gagacacaaa tcgccgttgt ggtgttcaca
126660gacatgggtt aggattggct gcatggatga cagagcactg tgggttctcc
cagagttgct 126720ggggaggagg cagagttggt gagcacaggc gagggtccag
gatgcaggaa tcctggagct 126780caagtcagtt gttcccttgt tgtaagatgt
ggccagtgtt gtgagcttca catctgtgcc 126840ttgaaaaaca ccacatctgt
ttgcagagtt gtttactatg tatacacact cagtagaaac 126900aaaaattgga
aacagtcagt gcccaccatc aataagtaat ggttgaacac actgtggtat
126960aagcttagac tattttagct tgggctattt tgcatgatta aaaatgttct
ggccaggtgt 127020ggtggctcat gcctgtaatc ccagcacttt gggaggccaa
ggcaggcaga ttgcttgagc 127080tcaggagttt gagaccagcc tgggcaacat
ggtgaaaccc tgtctctact agaaatacaa 127140aaagtagctg ggtgtggtgg
tgtgcgcctg tagtcctggc taactcagga ggctgaggtg 127200ggaggatcac
ttgagcccat tcgtgcgcca ctgcactcct ggggcacaga gtgagactct
127260gttagaaaga gagagagaga aagaagagag agggagggag gaaggaagga
aggaaataaa 127320tggaagaaat ggaagggagg aaggggaggg aggaaggaag
aaaggaagtt cagccagttg 127380ccttgggagt tctccattgc actgggttaa
gtgagaagag cagagacgtt tatgattttt 127440caaaacaact aaaacaaaac
ctctgtgggt gagggggcaa ggatatggct ataggaacat 127500ggggcagatt
aagaaaggga tatacacaca ccacttagca tttgttacaa ctgttgtggg
127560agggatggag tgcagaaaaa gaaaaaaaaa agtgcacacc atcccatgta
tgtgtataca 127620aagggacgct tggaagactg gtccccaaaa tgttggtaat
gattgtgtca gggtgctgca 127680gtgctagttg attttttttc acacttttgt
atatttgagt cttttacaga aagcatttat 127740tatttatgta ataaaaatct
aaatgacaag atttctgtta tgggaaaaat gtagctatac 127800agtgttgttg
taaaaatgtt tgcttggttc accactgaac ttaaaatgct tttaaatgag
127860ggaaggtgac gatgagatga ttatgatgat ttgcccttga gttacatagc
tggtgtacag 127920gaagctgtcg tttcttttgg cttacgtaga aatgtttgtg
gtgtctaatt ccacagatgc 127980acattgactc tcatgaagcc cttggagtgt
taaatacatt atttgagatt ttggcccctt 128040cctccctccg tccggtagac
atgcttttac ggagtatgtt cgtcactcca aacacaatgg 128100tgagtctctc
gcctggctca gcagatgaat ctggacggct tgttcaggct ctgattactg
128160ggaccacccc cagaatgtct gagtcagtca gtttgggtag ggcttcttga
gagtttgctt 128220tttttttttt tttttttttt ggtgtggggg tggtgcggaa
cagagtctca ctctgtcgcc 128280caggctggag tacagtgtca tgatctcggc
tcactgcaag ctctgccttc cagcttcaca 128340ccattctcct gcctcagcct
cccgagttgc tgggactaca agcgcccacc accacgcccg 128400gctaattttt
ttgtattttt agtagagatg gggtttcacc gtgttagcca ggatggtctt
128460gatctcctga cctcgtgacc cgcccatctc agcctcccaa agtgctggga
ttacaggcgt 128520gagccaccgc acccggcctt tttatttttt ttggagatgg
agccttgctc tgtcacccag 128580gctggagtac agtggcgcta cctcgactca
ctgcaacctc cgcctcccgg gttcaagcaa 128640ttttcctgcc tcagcctccc
gagtagctgg gactacaggt gcgtgccact gtgcccggct 128700aattttttgt
atttttagta gagacggggt ttcactgtgt tagccaggat ggtcgcgatc
128760tcctgacctt gtgatccgcc cgcctcggcc tcccaaagtg ttgggattac
aggtggctct 128820cgcaccaagc caagagtttg catttttagc aaattcccag
gtgaaactaa tgcctgcttt 128880tctgggagca cactttggga ctcagtgata
gagaggttta ttggtaggat agtaaaatag 128940gagttatttt ctttcacaaa
attggcaatt gggggaaatt taatcttcct tttttcttca 129000gctgtgactt
atgtattatg tttattttag gcgtccgtga gcactgttca actgtggata
129060tcgggaattc tggccatttt gagggttctg atttcccagt caactgaaga
tattgttctt 129120tctcgtattc aggagctctc cttctctccg tatttaatct
cctgtacagt aattaatagg 129180ttaagagatg gggacagtac ttcaacgcta
gaagaacaca gtgaagggaa acaaataaag 129240aatttgccag aagaaacatt
ttcaaggtat gctttctatc tgagcctata actaacccat 129300gccttttggg
aagtcacgtg atgtttcaca gtcagtaagt ctggaataat acctggtctt
129360gcttcacttc tgagttgggt aaagaagtct gtatcagtgt aattttctaa
tccgtcctgc 129420attatctatg gctcttggtt catacctgtc ttgaagttct
gtcatgttct gtctcttgtc 129480ctcagtagag atgctacagc agtggctcgc
ctcaggcagg gcagggcagt ggggtggctg 129540tcctgggggc aggcagtagg
ggcacgctga cgtcagggaa gttgaaaccc aagagaagcc 129600agtaaaagtg
agtctcagat tgtcaccatg tgctggcagt tttacacgct gtcagtaata
129660aaagtcttct ccctgcaggg cagcctgcct ccaataaata cgtgtagtat
caaatcctgt 129720cttccctcat aaattgtttg gaagctcccc aaggacagtg
atgaggcact cgtaagtgct 129780tgctgcctag atgggtccct ctccaccttt
gctagattct gagcattcac tgagttagag 129840ctgcttctgc aaatgtgctg
cttctgctaa gtggctgtga cttcatgcag ccttcacttg 129900gtttgtcatc
agtggagatg ccctgtgttg tcgaaggaga taagcccagt aagcctgctg
129960ggcacctttt ggtttgcagg ttcagcaggc agcccatggc tttccctgtg
tcgcattgaa 130020gcagctggct aaaattgatg atacattaaa ttcctgtgac
agatgatcag cttgtatttg 130080tgtaatggtg tacagttcac aaagcttaaa
aaaatgctac ctgccatttc atcctcagtg 130140aggaaggtga tacacagaga
gaccaagtga ctgtgtccac ggcgacggcg ctctgcattt 130200cactttagcg
gttaatgtac tctacctata tttttacttt atatttacca tatatctttt
130260catgtatact tggcgtaagt gctttatagt agtcacctaa ttcactgtca
tcttttttgt 130320ttcttggaag gtttctatta caactggttg gtattctttt
agaagacatt gttacaaaac 130380agctgaaggt ggaaatgagt gagcagcaac
atactttcta ttgccaggaa ctaggcacac 130440tgctaatgtg tctgatccac
atcttcaagt ctggtaggtg aatcacatta gtcttcctgg 130500agtgtctcgt
tccccattct gcactataca ctctcagagt gtaggagctg tgctgcccgg
130560tagaaactct gccttgccca gtgtgccagt tgaaaatatt tgttgctgta
agagtacacc 130620tgataccatg tgacccagca gttccactct tgggtatata
cccaaaagaa tggaaagcag 130680ggtggtgaaa agatatttgc atgccagcat
tcatagcagc attattcacg atagctaaaa 130740tgtggaacca actgaagtgt
ccctcgatgg atgaatggat aagcaaaatc tggtgtatat 130800ttacagtgga
atattattca gccttaaaaa aaggacattc tgacacatgc tacaacatgg
130860gtgaccctta aggacattat gctaaatgaa ataagccagt cacaaaagga
caaatactat 130920gtgattccac ttacatgagg gacctggagt agttaattca
tagatataga aagtagaatg 130980gtggttgcca ggggctgcag gggaggggag
ttatttttac aagatgaaga gagttattct 131040agaaatgaat ggtggtgatg
gttgtataac attatgaatg tacttaatgc tactgaactg 131100tacagttaaa
aatagttaag aggaccaggt gtcatggctc atgcctgaaa tccaagcact
131160ttgagaggcc aaggcaggag gattgcttga gccaaggagt ttgagaccag
cctcagcaac 131220atggtaggac cccatctgta caaacaaact agccggggat
agtggtgtgc atgtggtccc 131280agctactcag gagactgagg ctggaggatc
gcttgagccc aggaggttaa gtctctagtg 131340agatgtgttc atgccactgc
actccagcct cggctataga gtaagaccct gcctcaaaaa 131400aacaaaacaa
aacaagacaa gagccaaaaa tggttaagat gggccaatca cagtggctta
131460tgcctgtaat cccaacactt tgggaggtca aggtaaaagg atcacttgaa
gccaggagct 131520tgggaccagc ctgagcaaca tatcgagacc cctatctcta
caaagaaaat caaaaactag 131580ctagatatgg tgggcacatg cctgtagtcc
cagctacttg ggaggctgag gtgggaggat 131640ctcttgagct caggagttcg
aggctgcagg gagctattat tgcactccag cctgggctac 131700agaatgatac
cctgcctctt attaaaaaaa aatccaaaaa aaaaaaaaag taaacctgag
131760agcttcctcc tcctgtgtta aatttggagg ccaagatgtt tttgttactt
ttacaaatga 131820tcaaggacgg tgaaggttgg gcatggtagc tcacacctga
aatcccagca ctttgggagg 131880ctgaggcggg gtgatcgctt gagcttgaga
ccagcctgga caacatagca agagacccca 131940tctccacaaa aataaaaaaa
taaaaaaaaa tagccaggag tagtggcatg agcctgagcc 132000caggaggtca
agctgtagtg agccatgatc atgccactgc actccagcct gggcgagatc
132060gagaccatgt ctctagagaa agaaaatgac aaggacagtg aacccaagaa
agtcataaga 132120tgccagctgt gcagcaagca tggaaagcag ccagtccaaa
ttaggacagt gtgttttcca 132180agaagaacga tcgtttgtaa tgagaatgct
ttgctttaaa taaatgacta aatagctaga 132240agcctagttc taggggatag
gcacgtcttt cttctctcaa gaaaatagaa aggcaattct 132300aatttctagt
aacagcaaac agcattaagt catggtccaa atatgaggca aaccaaaatg
132360tggcttgatt gttcagcagt tgatctgttg gaagcccttg atattaaaaa
ggttctcctt 132420taagcggctt aggagtcacg atcaaagacc tatagaaaga
gatgccatcc ttctaggatc 132480cttggctctc ttgggaacta gattcagata
gtcataatgt aaatactgct tgagctttct 132540ttctttcttt ctttctttct
tttttttttt gagacagagt ttcactcttg ttgcccatcc 132600tggagtgcaa
tggtgccatc tcggctcacc gcaacctctg cctcccaggt tcaagcaatt
132660ctcctgcctc agcctcccga gtagctggga ttacgggcat gcaccaccac
gcctggctaa 132720ttttttgtat ttttagtaga gacagggttt ctccatgttg
aggctggtct cgaactcctg 132780acctcaggtg atccacccgc ctcggcctcc
caaagtgctg ggattacagg tgtgagccac 132840cgcacccggc ccgagctttc
atttttgaaa tcaatgtatg actgaaacac tgaagactta 132900ctgacttaat
tatggtttca gaacagaatg aaaatgtctt cggttctgat gaatataaaa
132960ggaaaactaa ccaagttaat ttggcaagta gatggtagag atagaggtgg
ggagtggaag 133020gggaactaaa atcttcacct agcattgttg ggattatatg
gttacatcat ctgaagttga 133080cagaccaaaa tatagaggct tcagaggtct
ccaaatagaa ctaaacatgt aattcagatt 133140gttaggaggt agtataaatg
agctaaatct catctttatt acggtagagt taatgggtga 133200tgtctaaagt
tgtctgaagt ctataaatca tgacaaatta tgatgtggtg attgtattca
133260acagtctttc agttgcaggg ataaaacccc agtttaaact agagtaagag
aaagaatgtg 133320ttggtttaag ctcctggaaa gtgcaggcaa gggtagttgg
taggactgca tctagtgttg 133380taattctgtg gtctgcattg tatatttatg
catctcagct ctgctttctt cttttcattt 133440atataatttt taaattttat
tttaaagata gggtctcact ttgtcgccta ggctgaagtg 133500cagtggcatg
aagtgcagtg cgaggctcac tctagcctcg aactcctggg ctctagagtt
133560cttcctgcct cagccttcta agtagctgag acaataggca tgtaccaaca
tgcctggata 133620ggttttaaaa tttttttgta gaaatggaag tcttgctgtg
ttgcccaggc gggtctttaa 133680ctcttagctt caggcgatcc tcctgcctct
gcctcccaaa atgctgaggt tataggtgtc 133740acccaccacg cccagtctca
tctctgcttc ctgtgttagt tttgttctct ggtgggctgt 133800tttcacatga
ccgaagatga cctctagcag gctgtgttct cagcccctca agtaggccta
133860tgtgattggc cttgcatgag taatatgggt gaccataaac ccctgaatgc
tctggtccac 133920atgggccaaa tgggagactg gacagcattc cattgatgag
gaggtggggc tggtctccgg 133980gagtaaggga gaggagcaca tgcagtaact
gatggtctgc tgcaagggat agcagcacag 134040cagttagaat tttggaggta
actaccagaa ctgaaaacag aaatgataac aagtagttgc 134100cttaaaaagg
gatgggagca gggtgctttt gtgatcaaag ctcctttctc ttactggatt
134160tttgtacaca ttttgcatac atatcttaga gtaaaagata gcattttcag
ccttggtcca 134220tttgaggata ctcttggcgt ggcccgcctc catgctagca
ggctctggtt gtgccaagtt 134280cagttgagca tcctggctct tgcctgcacg
gaacttccag tcagtgcgtc agtatcacaa 134340gtcttgatat ttcctatgaa
gaagaacagt agtgcagtga cagacgaaat gggtgggcag 134400gcagaggcag
gatttctgag ggagagaagt agctagcttt ttgcagagaa gagttccggc
134460acccaagaga gcagctgaga gtacaggcag gcaggcagga tgccggtagg
gcccggccgc 134520acggcgccac agaatcctgg agaaaggggc ctcttcatgg
cctctgcatt cagctgctgt 134580caccctccgc acaggccatg gccaaaattt
aattttcata gtggactcta gtttttgagc 134640cttacttgct attattgaaa
taattttctt gtttcttttt aaagatcttc ggattatgct 134700tcactgacca
ctgtaataag tttaaagttg agaaaatatg gcttgttaat gaatgatagg
134760tcaattttag tatgttggtc attttaatat tttgccacca gttggtttgg
atttgatgcc 134820aggaggagac agcctcattt ctaaggacta gtcttgcctt
tgtgggataa gggtggtgtg 134880ttctgtgtcc ttctacatgt ccgagcgatc
tctgtgcagc tcaaatgtgg tcactgtctt 134940attgcgctga tttcctctcc
ttccatctca caattgaggc aaaatattgt tactgttgaa 135000gtgttgtcca
ataggacttc cagcagagac aggatgtctg cactgtctaa tttagttgcc
135060tttagccaca tgtggtgttc tgtacctgaa atgtggctgg tctgattgga
tagcttaatt 135120tataatttta tttaatttta attaacttaa atttaaacag
ctctgtgtgg atagtggctc 135180ctgtatgaga cagtgcaggt ctgttgagaa
gcagctttac tggtgggagt ggagggcttg 135240gagagggcac gtgggtttcc
tgctggtatc ttttgacctt atttaatctg cccaacattt 135300gcaagtaagt
tgtgtgtgtg tgtatatata aatgtgtgtt tctgtcttct tgtttccttt
135360gactgcattt atttgaaaga cactaggtgg cagaattact gtatttgatt
ggtttcaaga 135420taagagttga aataattcat ctcgtgtttt tatataagta
aggtgtgttt agcatgtaaa 135480attggtaata tgtattcacg tactgcttaa
acaaaggcta
tgaattccac ccataaaccg 135540aaaatgaaga cctttaaatt tgtccatttc
aggcgtgggt acttcttaaa taatacctgg 135600ttcaggaact agtcagaatg
gcacccttga ctttttgttt cctgcttttc ctcttgttgg 135660gagaggaggg
tattcatccc aaagtggttt gcctatttca cattccatct aggataagca
135720gaatagccaa gaaagatagc tgtcctcctg tttacaacat ttggggtaac
cagcatccct 135780ctcttttggt ccaagataga ctggtttaga aacagatgat
ggcaccagag gcccaggagg 135840tggaaacatc agctttgttt gttgtccatg
tggctgaatt agagctgtct ggccttgtag 135900cctcaacacg gccttccagc
tttgctcacc gtgattttca aggacacatc ttgtgctctt 135960ccctgcctgc
catccagact atacccagtc agggtggcag gagctgctgc cccttcctcc
136020ctgagtcctg gtcgtgggtg gtggagatgt gccatgacgc tcacggaggc
atgctcaccc 136080cttcctctgt ggcagagggg atggctgcac gacagctctt
ccctgtcctt tccaaagcgt 136140ctgtggttcc actttttggg gcaaagcagg
aatactggaa gagagagaaa gtggtccttt 136200ctatagtaat aaagttgaca
ttgattcaag ttcatgcttg gggaaaggac agggctacta 136260acaattataa
tgctgggagc aatggaattt tctcatgggt atgtggtagg tttaatttta
136320attatcccag ttaattctta gaactgctct gtgaagtatt tcccgctttg
tgcttaagtt 136380ctaaaagatc ctgtgccaaa accaagaatg aaaacccaag
cattctttct tgcccatcga 136440tctttctctc atcaggccac ttcttgggtt
gatagtggtg agtgtagccg ctgccacttt 136500cagaataccc accatgggcc
ccagtcactg tgtggcgtgg agaagagatg gttctctctg 136560tgtcatagct
gaacaagccc agcccagaga ggtttctgcc ctaggagctc tcgatggtgg
136620aattgggatg cgatcccaca tcctgcctgt tttgaaaaca gcattcttta
tttccaattc 136680ctgcttccat tgttcctttt aatatttctt tgtttagctc
acaaaaacac ggcttgcgga 136740gctgctgcgt gcagctgtag ctgtttctct
gggtgcagcc tgcatccgcc ttcctgcccg 136800cctcctttcc tgcactgcca
tcgtggtctc cgggcacttg gtccctttct cttcccctga 136860gtccctttgg
ctcccctgtg ccacccttgt gatccacagg ctctgccttc tttctgtctc
136920agactgctgc tcatcactac tcgggaccct aggaagggag gttccaccga
gaagcatctt 136980ctcatctcag ccacgttctc agtgccactg ttgtctttgt
taggtaatgg tagctactgt 137040aacaaataaa ccaacatttc catggcttca
caccagagaa ggttgtttct tggttttatg 137100acaatgtatt gagggtgttc
ttggttcacg gatggttttc ctccatgtgg gaattcgggg 137160acccaggctc
ctttccttct tttggttctg ttctccaggc cttcacatcc tctgtgtctg
137220gttggggaca aggagaggga aggtaaagaa ggctttgtgg ccttggataa
gtgacaggca 137280tgcctttgct ggtgttctct cgtggtgaca ggtcacagcc
ccaccctgta aaaggggact 137340gagagacgtc gtcctgctgc ttcccagcag
cagcactgtg gtctctgatg tgttttctgt 137400gaggataaaa acaggtgatt
ccaggatgag gaaagtcagg gaaacccttg gaaggagggg 137460accaggcggg
tgtcaccatg ggattagtgg tggcttcaga atgagctgca gcgagtgcca
137520tgccttctaa agcttttgct attctgatat gcccacacca tgcccagcag
gtgtctgcct 137580tgctctccgc agagagagtg atgaatcctt ctcatgagcc
tctgtccagt tgttcctccc 137640tccacctgga agggaccctg ggttcctcat
aacatcccag cggaacaggg gaccttctat 137700cctgtcccca agttcatcct
catcctcctg ccggcttcct ggcccctctt atgtctgctt 137760cctgacgcca
catccttctg gattctctgg aattgaattt tgcctttgat gcttatttaa
137820aaatatccat tgcaggccag gtgtggtggc tcacacctgt aatcctgtgc
actttgggaa 137880gccaaggtgg gcagattgct tgagcccagg agtttgagat
tagcctgagc aacatgttga 137940aatcctgttt ctatagaaaa tacaaaaatt
agctgggcat ggtggcgcac acctatactc 138000ccagctactc aggaacctga
gacaggagga tcaattgagc cccggaggcc aaagctacag 138060tgggctgtga
tcgtgccact gtactccagt ctggtcaaac agagtgagac cctgtctgaa
138120aaaaaaaaaa aaatccattg catacttcac cgtagcgaaa catgtatgtc
ttacctttcc 138180tttcctgcct gtagctgctc ttttacactt aacagccaca
ctaagccagc cttaaatgaa 138240aaacaaacca gcacttcctg tgccctcctg
cttccttcat gaggggtccc tccctctgtg 138300tacactccat tctcattgcc
catggtggtt tgtttccctc ttgtttctca agccatggca 138360gcctgcctct
tgccctcttt actaaaaagg cctttgcaga ggctgcctgt gttctttctt
138420tctaggtctc tctcatccta ggccctccag cttgattctg tggagctgcc
ctcttgtcac 138480tcagtagctt gtggggtctt ctctgtctag ccacttaatt
gattgtgttc ctcgagttgc 138540tgtccatggt ctctcgttac tgttttctct
gtgtttctgc ctctctcctt ggccttggta 138600ggtccatccc ctttgtgacc
ttggctgttg ctctcatgga caactttctc ttgctggtcc 138660ttgtagtcct
ggcatccagc ttctcgacac gggacttgtc ctgccagtac ctcagacttg
138720cacttaaaat tgaactagca ccactgtcac tctccagggc ctcttcttgt
taattagatc 138780attagggatg ttcagaatcc cagcatcata gtatgttcct
cctcccgcta ccccaggaac 138840cctaacctta cctcctcctc tctatctact
aggaggtggc cctcagagtc cgtctcatct 138900tccacctgaa cttccctaat
aggctccagc agctgccacc ccgggggctg agtacttcct 138960ccatgccttg
tgcagtgctg agccctttac ctgggttctc ctgtttgctc cttattacag
139020ccctgcgaac agatactgct cttaattcca tcttacacct aaggaagctg
aggccccagg 139080taaggtgcat ccaaggtcac ccaggtagta gacagtagag
ccacgatctg aaccaggcag 139140tctgattcag agcctgtgtt gacactcagc
cacctagaac acagcttgga ttgtgggttt 139200ctattacctg ttcaaaaccc
ctacatcccg ggtctgtccc tgcacgtgct ctgtggcctg 139260gctgcatctt
ccttgaaggc agtgcatgcc tcttcactca gggggcccat gcaggaacag
139320agggccccac agaaggatga ggccagtgca gaatgggctg gaggggacaa
tgctgaccag 139380gaagcaagtg tagagaaatc ccaggaaacc tggaggagcc
agagacaagg cattagaact 139440cctcgtcgtg acctggtctg cattctctga
gtgtgctgct tctgttagct cgcttccttg 139500gtctcaggtt atagtttaag
gcattgtgga gccctaaaaa gcctgtactc tgtttttacc 139560tgttttagga
ccctttcact ttggggatgt gttgattttt tttttttttt tttttttttt
139620tttgagatag agtctcgctc cattgcccag gctagagtgc agtggcacga
tcttggccac 139680tgctgcccct gcctcctggg ttcaagcaat tcttgtgctc
ccgcctccca aatacctggg 139740attacaggca cccgccacca cactcggcca
atttttgtat ttttagtgga gacagggttt 139800taccatgttg gtcaggctgg
tctcgaactc ctgacctcaa gtgatctgcc caccttggcc 139860tcccaaagtg
ctgtgattat aggcgtgagc caccacaccc ggcctgaaat ttaaatcaga
139920aataaaattt tgatcccaac agtgatgcca ggcagcccag atctggggga
gagggtggcc 139980ttggccagct gggcctttct ctgtttccca agtcttgctg
cctctccctg ctgggctttg 140040cagcctgtgc atgtctctgt gcctttgacc
ttgtttatcc aaaggagagg atagaatgaa 140100gtcatgattc ctggagccct
gagaaggatg ctgtggagaa atttgccggt agaatctagc 140160tgagtgtgtt
gctgaggtgc cagcattgtg tgtggggagg ctgaccgctt ggcctgccta
140220ggcccaggat gctccatggc cgggcacaga ggccacttgg ctgtcaggtg
tcaggagcct 140280gcagagggca cacagagcct ggaccgcagg ggggtcctgc
tttctcacct ggcctccttc 140340agcatttctg tccctcagtc cttagcaagc
ccaggagctg ttgagtttgg caggtgccga 140400gtgctgttcc tgcctgtgta
gctgtggctc agtcctgtgg gggccccgct gtggcccgag 140460tgcagtgatt
cgaggcgctg agtgttccct gactccttct ccaggagctg tgttcagact
140520ttcgcagctc ttggcttgga gctcctggag ggcttggcat tgccgaccaa
tgtggaggtc 140580gacagtgaga gaggaggaat gctagctttc ttgaccagtc
cattaaataa gtgggatatt 140640ggccaggcac ggcggctcac gccttaatcc
cagcactttg ggaggctgag gcgggtggat 140700cacgagctca ggagttcaag
accagcctgg ccaacatggt gaaaccccct ctatactaaa 140760aatacaaata
ttagctgggc gtggtggcag gcgcctgtaa tcctagctac ttgggaggct
140820gaggcaggag aacagcttga aaccggaagg tggagtttgc agtgagccaa
gattgcgcca 140880ctgcactcca acctgggcaa caagagcaaa actctatctc
aaaaaaaaaa aaaaaagtag 140940gatatctgtt tctgcttaga aaaatcagaa
ttttctaaat gccaggtgtt ctgaatacgt 141000aagtatggga gacgactcag
cctgtttcat ttttatgtaa aatcttcgcg tagccatgtg 141060gcactggacc
gagatgaaag caaagacatt tctccttaac tttgtttcta ggaatgttcc
141120ggagaatcac agcagctgcc actaggctgt tccgcagtga tggctgtggc
ggcagtttct 141180acaccctgga cagcttgaac ttgcgggctc gttccatgat
caccacccac ccggccctgg 141240tgctgctctg gtgtcagata ctgctgcttg
tcaaccacac cgactaccgc tggtgggcag 141300aagtgcagca gaccccgaag
taggttcata atgccccaca gcccagggcg ccagcccagc 141360accctgtcct
gagactccca gtaacctgag ctttggccac cgttaaagca ttttcatttt
141420ccattttttg tgagggcttg tgaaatttct gctgcatatt aatattcctt
tcatggacag 141480catattattg ggacaaacat gcggtccagc taaaggcatt
caaaatagca gttgctttct 141540aaatgcgatt ttctttggca ggttctttga
caccattgca tcttgtggga tatgcttgtc 141600atgctctgtg gctcctacta
agttctagtc cttaaattgg ttccatagcc agacatgttg 141660caatgtctta
acctcattat aaagtaaatg tggttctggt tatccttaga taatgaagta
141720acagtgtagc aaatttcaaa acctcttgga aatgttattt taccattcaa
aaaggcttac 141780taaggttctc gttatgggtg gccctctttt tgcaaaaggt
tttcaggctt aagctccatt 141840tctaggtgct ccaacactcc attatttgta
tatgtatgga aataaaagct gtgaccaccc 141900ccaaccctgg cccccgccca
gctgaatcct cagcacagta tttctggaag gctcaagatc 141960ccacgctggg
gaaaagaagt tctggagaca aaagagggca ggtgctgccg tgcctctctg
142020ctcagtatgg atactggacc ttgtgctgcc agggctccca gtagggccag
ttcatggcac 142080tcagctggaa agtccactgt tgggaggcat tcttaaccat
ccactctgtg ccgtatgtag 142140tggggtctgg tcattctgtt ggaggagaca
gaccagtgac gacatttgaa atgcttggtg 142200gatgtcttag gcctgttacg
atgactgagc actgtggggg caggagacag aaagtcagtg 142260tctcctagtt
ctgtgctgct ttaacgtgca tagaaatcag ctgcggattc agcagatcac
142320tccttttctg acagatgggc ctgcttactc tgatgttata tcagaaagct
ctgaatctgg 142380gaattgtgtc ccctgaattg gagtaacaga aatgcttaga
tgatgagtgt ttaaaagaaa 142440taaaccaaag gtaaatttag tttggaattc
agcaagcgtc ttcattcagc cctctgaggg 142500caaactacag ctttttgtaa
atgtaggtaa attctgtgac tgtttcgtga ccccctctga 142560tccagttttc
ctttataacc ttctgtattg ttccttctat tatcctgaaa taacattaat
142620agattaggct gggcgtggtg gctcatgcct ataatcccag caccttggga
agccaaggcg 142680ggcagatcac ctgaggccag gacttcgaga ccagcctggc
caacatgatg aaatgctgtc 142740tctactgaaa ataacaaaaa ttagccgagc
atggtgacag gtgcctgtag tccctgctac 142800tcagaaggct gaggcgggag
aatcgcttga acctaggagg aaaaggttgc agtgagctga 142860gatcgcgcca
ctgcactcta gcctgggtga cagagtgaga ctccatctca aaaaaaaaaa
142920aaaaaaaaaa aaattaatgg atcaatggat ttttaaccta ataattaaat
ttcaaaaaat 142980atcgttcttt aatggtaatg taaaggtaaa attaagataa
tatgtaacaa gcatgtgagt 143040gtctaaggtg tccccgtggt ggaaggaaaa
aataaatccc cataagtgtc caagatgccc 143100atagagagca gagctgttct
ggtttaaacc cctgctctta gcactgtgtt tttccagctg 143160tgggtggtgg
gggatgagta tctttttatt tccatgagat gagaaaaatg aattactaga
143220agtgtgaaat acaaaacaca gctgctcttt ttttagccat agactcagca
gccataaaat 143280tgctgtatcc agttgcagaa attcctgctg cttactcttg
accctctctc ggtttgtgtg 143340catctcctct caggctggct cccagatggg
agctggctcc aggcgacact gggtgctctg 143400ctccaggagg tccttatgtg
ggtcctgccc tagcctagcc cctctcttat ggactctgtc 143460actgtgggtt
tatgattcac tctcaatctg tcttacctct tggtgaactg ttagagtcct
143520gcctatactt tggcgcttgt gggtgtgttg tggtacacat gatgtgttgg
tcacttccca 143580gctcatcttg ttctgagtca ccctagattt gggacattca
ttcgccacca gtaccgggcg 143640gtgtatggcc tgagatttgg gggggcttgt
gctgctacaa attggggctg aatttgagtt 143700gacagtggac cttctttatg
tctactgctc atatttgaat tgcaaatact gcctcttctc 143760tttcagaggc
tcattaccct atagctgtat tattgcaaag tgcacaatta cagcttgagt
143820gtaagtcaca ctgcgctggc aggacggccc actgagaaag ggcacgtttc
ctgttcgtta 143880gttttcacat tgacacataa tttacaatac agtaaaatgt
acttttctat caactgtagt 143940cagtaacagc ccccctcccc caaccacatc
aagatataga ggagtgctgt cacttcaaac 144000agttccctct tcctctgcca
catcctgccc ctccccaggt ctaaccacca atccgtgctc 144060tgtccctctg
ttcagcccat tgcagaaggc catagaaata gaatctatag gctaggtgtg
144120gtggctcatg cctgtaatcc cagtattttg agaggctgaa gtgggaggat
gacttgaggc 144180tgggagttca agactagcct gggctgccta gcaagacccc
atctccagaa aaaaaaaatt 144240taaaaattac aatcacgtcc ctgtagttca
gctgcttggg aggctgaggc aggaggatca 144300cttgagctca ggagttagag
gttacagtga gctatgatcg tgccactgtg ctccagccta 144360ggtgacacag
caagacgttg tctctgggga aaaaagaaag aaacggaacc acgcggtgtg
144420cagccttctg agtctggccc ctttcggtga gcagtgtcta aagttctgtc
gcgtgttgcc 144480cacgcgtcgg tggctcgctc cttgcaactg ctgagcattg
tatggctagg ctgtagtttg 144540ttttcacttc accagttggg aaacagagaa
aaggcacttt ttaaaaagtt taaatctgta 144600gaattttggt ttttaccagt
tctcttctaa atcctgaggg attacaggaa aagttgttgt 144660atttcagaat
attcttagct tgatgtgacc tctgtccccg ttaaggccct ttgccgcaat
144720gggaaggacg tcgctcggtc agaccctgaa ggtcagaggg gcagtttggg
agtgtgtcaa 144780cattttaact gtatggacta gagccaagag tctcaaggtt
tataattccc acgtattcaa 144840aaagaaaaaa acaataaagt gagaagtcag
tgtagagtga aataacctgt gttagtgggg 144900aagaagtgtt tttaaacagg
atttccataa cgtataacat caacatgttt agagtggtga 144960tgtttcattg
ggaaacgaac agtaaaacat gaaagcaggg aggttttcat tctggcagtt
145020ggcaactttc acggcagatg gagaatttca aaagcaattg ctcaattatc
aaacatagcc 145080agtgtgagtt ctgaaataaa ggtgctgatt gaatgtgcag
ctttatggtg gattttgcta 145140ttcaggcaag cattttaatt ttctgcctgt
taaattctgt tttctttagt ttttcatatg 145200tggtttattg tagcttagga
atagataact gagagtatat attacacata caacattctg 145260atatggcaat
atttaaaaca acttgtctgt tttagaacta gaattaaaca taatcatctt
145320cagtattttg caaataagct cactgccatc cagaaacatt gtcaatgcat
ctgttgctcc 145380ttctagaaga cacagtctgt ccagcacaaa gttacttagt
ccccagatgt ctggagaaga 145440ggaggattct gacttggcag ccaaacttgg
aatgtgcaat agagaaatag tacgaagagg 145500ggctctcatt ctcttctgtg
attatgtcgt aagtttgaaa tgcctgtaaa cggggttgag 145560ggaggtgggg
accaggagaa catcctgtgt agatgacact tgcatggacc ctctggaacc
145620cagaccgccc ggtgtcctgc caagctccat cgaaactaaa tctagaatga
atgtttactt 145680ctgctgtgac atataattgg agaccaggcc tggccttcca
gtcactggat tctaagttgg 145740actgtgagag tttttgcagc tgactcattt
atcaaatgcc cggctattgg ctcacgccta 145800catgatgctg ggtatgtttg
ttaatttgag ggaagcaatg gaataataat aactaatgat 145860ttaaaaaaca
aagtaagtgc attgactgta gtggggttct gattttaaat ttttttaaaa
145920attaatacca ggagcagtgg cttatgccta aattccagca actcgagagg
ctgaggtagg 145980aagatcactt gagcccagga gtttgagaca agcctgggct
atggtgtgag acacccatct 146040ctaaaaaaat aaaaaataaa aaattatcca
agtgtggtgg ctcgtgcctg taatcacagc 146100tctttgagaa gctgagggcg
gaggatggct tgagcctggg agttcgagac cagcctggca 146160acacagagaa
accctgcctc taccaaaaaa agaaagagag gaagaaagaa aaattagcct
146220ggcgtggtgg tgcatgcctg tggtcccagc cacctgagag actgagaagg
gaggattgct 146280tgagcccaga agtttgaggc tgcagtgagc tgtgactgtg
tcactgcact ccggcctggg 146340tgacaaggcg agacccctgc tctaaaataa
tttttttaag ttaatttgta gaaaaggtgt 146400tagatgttct ttgtcacatt
ttatgatgga ttcctgttta aatgccgttc tctttaaaga 146460aaaaaaaata
acttgtggga gtttttaacc ataaaactag catcacatat ttaccatgga
146520gaatttacaa aaaaacaaat aaacggagga aaataaaacc tcctgtaatc
atactactca 146580gagataactt gctgttagat tttggtctag atttaatact
ttttctatat ttatattaaa 146640aatatttaaa acatatgcat ttctttgtca
caaacatggt atcttataga tactactgtc 146700acatagcaaa acagtgttaa
atattctgaa tcagaaaagg aagccgactc tccaactgaa 146760agaggtgtta
tcctagagac tttttctggt gatgacaatt tattaatagt cactttttgc
146820tttactttct ctattgaagt agtttttcta ttttgttcta cttttaagga
taatataatt 146880tataatgctg tttttcacag aaatataaga aaaaagatac
taattttata agttaataaa 146940gtttgatcat cccaaatcca aaaatctgaa
atccaaaatg ctccaaattc tgaagctttt 147000tgagtgctga cattatgttc
aaaggaaatg ttcattggaa ggtttcagat tttcggattt 147060agggagctca
acaaataagt ataatgcaca tatttcaaaa cctgaaaaaa atcctaaatt
147120cagaatactt ctgatcccaa acatttcaga taagggttat tcaacctgta
ctgtcagatg 147180atcccaaatg aaaaatatta atcgttaacc aaatatcaag
gaattgatca cattttacag 147240tttctgccta ggattatgaa tcaagatgaa
aaggctctgc atgtttaaaa atatatattt 147300ttattttctt ataaatctta
aatatctaca cttaagattt atttgatatg tgggatccat 147360tcatattttg
gattcaacag ttctgtcaaa actgtggcag tgatagggga ttcttttttt
147420cccactgaac tatcacaaaa ttggaaaaag agtaattgga gaaccccact
ggcttagccg 147480gcccgaagcc cgggagaggg caggcagtgc tgtggatggg
gtcatcccag cgcaacgctg 147540cccctgctac ctgcggatct cgctgaggcc
tgcctttgtc ctttgaccct tggccatttg 147600ttagtgtctc tgagagctgg
actgctgtac cctacttccc cagggggcct aacttcacac 147660agcctctgcc
gcagtgcgtg gttggaggtg acggccttgg taaatcgagt ttcctacctc
147720ctcaattatt tgtgctcata cactgtatat ttttagtgag gtttatattt
gggatgtgtt 147780ttctccttct taccctttct ggcctttcta tggcattaat
acctggtctc ttcttgtgta 147840cttgaaaatg aatctctcat catatttttc
cttagtgtca gaacctccat gactccgagc 147900acttaacgtg gctcattgta
aatcacattc aagatctgat cagcctttcc cacgagcctc 147960cagtacagga
cttcatcagt gccgttcatc ggaactctgc tgccagcggc ctgttcatcc
148020aggcaattca gtctcgttgt gaaaaccttt caactgtacg tcttcatcct
gccgactatt 148080gccagttgca gttttccctg ccttaaaaat ggagtattga
aatttttaac tttaatttct 148140gatttgcaaa atagtcatct tttgttcttt
tccttcttgc tgttagccaa ccatgctgaa 148200gaaaactctt cagtgcttgg
aggggatcca tctcagccag tcgggagctg tgctcacgct 148260gtatgtggac
aggcttctgt gcaccccttt ccgtgtgctg gctcgcatgg tcgacatcct
148320tgcttgtcgc cgggtagaaa tgcttctggc tgcaaattta caggtattgg
gaagagaaac 148380cctgatattg atttatattg aaaatttagc aggccaagca
aaacaggtgg ctggcttttt 148440cctccgtaag tatggtcttg acatggtcac
cgatagaaac atggaaacat ctgcaaactt 148500gccgttactc gtgtgtccga
tctgactgtt tcttgtattt ttttctagtc tgcccttact 148560aggatgaact
gtacacatca gttcatcctt tttaaatgag catgaggtta ttttgggttg
148620ttaggtgtta caaacacact aatgtgtttt tgtctattag agcagcatgg
cccagttgcc 148680aatggaagaa ctcaacagaa tccaggaata ccttcagagc
agcgggctcg ctcagaggta 148740atgctggaaa cacaggtcgt ccttgtgtta
ggacaaccca ggatataaag gatatagatt 148800tgtacgggaa taaattcaca
ggacaagaaa tcgatgtgcc ttataggtgg gtttactgca 148860gaagtgccat
aatagaacct tcctactttt aaaacaacca gatctcactt tctaaagagt
148920aaaggatgac cggcaggatc acgtctgtga cgtgagtgga ggcagtttgc
actcctggtg 148980gctgtttgag aggtagcatt tagaatgcct gtattcactg
tcctgtgatg agtgggaaaa 149040taggttatca ggtttatctt agcaaaatca
aagcatgtca tctaattgct aaacaagagt 149100tggcaaatct gagagacatt
actcaatcct tggcatgcag gacttacatc tgcatcctgt 149160tgccatttta
tgtcttcaaa gcatttaatc atttagttgt gtttgcaaag tctttgagaa
149220gcctttgtca gaaatcccta catctcctat gtgagtgtat ttccatgact
gcagaataag 149280ttaaactttt acctttttcc ttcccttgcg gggcggggtg
gggggcaggg attgtgtgtg 149340tgagagggag agagagacag cagagaagga
gaatataatt atcatgctgt gtactttgag 149400ctgaaactgc aaaaaaggaa
aaacacacaa aaattattat gcttttcagt ctttagagta 149460ccttgtctat
tatgcttttc agtctttaga gtaccttgtt gatggtgttt ttaaatggga
149520ttgggcacaa ttaggtggac agtttgggat gatttttcag tctgtagggc
caagctcttt 149580tgtaatttgc attatgaagt tgtcactctc atagcagatg
gcgggagata aactattatt 149640actttttgac cctagactta gtcttcagtc
cagatgaggg agattaaaag attataaata 149700tcttgtgcca gatgaggtga
ttttattttg aaatgaccat gaattcctat cagttgtctt 149760actgggatat
ttgatagtgg aatttgtgca tttgagtctt agatgatctg ttttacattt
149820attaagaaag cctttattag cttttatact gtgtattgcc tgttgcagtg
tttgagtata 149880aatgaaattt ctggaaaata ttaatggagt acaaactgtg
atacttaaaa gtaaactagg 149940gcctgcattt gtatcatgac ctgtttgagt
attgatgaga agatagctgt gaagaaaaag 150000gtttaaacaa gtgtattttc
ctttaagaag ccactaatag tgcatctcct tagagtgtat 150060atttctagaa
tcctagtgtg cagagtttag actaagacta aaaaaaaaaa aaaacaaatt
150120atactgtaat ttcattttta tttgtatttt agacaccaaa ggctctattc
cctgctggac 150180aggtttcgtc tctccaccat gcaagactca cttagtccct
ctcctccagt ctcttcccac 150240ccgctggacg gggatgggca cgtgtcactg
gaaacagtga gtccggacaa agtaagtgtc 150300cagcgtgtct gcatgggagg
cacagggcgc tgagtgcctc tgtcacctgt ggcagataca 150360gagagtgcag
aggaggtgcc gtggacccaa ggagttctgg cgctcggctc ggctcagtga
150420agctgtggtt agagacgtgg ggggccatca aggtctgagg gagccaagca
gtgctgatgt 150480gggacccttt tggtaggagt gtggggtgag tagttagtgg
gtgaatcaag gaatagtcgg 150540ccgtggcctg caggcccctg actgcacagg
ccttcaagca
catgtcaatg ccgttagcct 150600ccctccatct cctcatacct tctggccacc
tgtgagttgc actgccactg ccagccattc 150660tggtatgttg tcagcacctc
cactgctcat acctcatggt tagggaccac ctggagcctt 150720ggtagagcct
tggtagagcc ttggtactct actttcctgg acaaagttca gcttatgaat
150780atgaatttag atttcaaaaa ccagcagccc aagtataaga aagcgaaggt
tcagtcctgc 150840cttcttaggc tctattcgct aagcacctgc cctgccctgg
ttgctgggga gagatgagta 150900aagcagacaa cccaggagag gatggcaaag
gggccgctaa cccttagtgg tttagctata 150960tttggaaggc ctattggaag
ttcaccaggt gaagggggag gctgtgaggg tgcccaggca 151020ggtaacagaa
gtccaaaggg gaaaacctgt ggtgtggtga gccgtatagc cacagcctgc
151080cggccggcag ccctctcagc ctagtgcggt gttcccaagc actggcctag
gcctgtagct 151140ccagggatgt gaagtcccct tgaacgccgc ccatcatgtt
ccccttatcc atttttttct 151200tcccaggact ggtacgttca tcttgtcaaa
tcccagtgtt ggaccaggtc agattctgca 151260ctgctggaag gtgcagagct
ggtgaatcgg attcctgctg aagatatgaa tgccttcatg 151320atgaactcgg
tacgggggga gcagtggagg caaggaatcc tcagcttttc ttgtgacttc
151380caagtgggat ttgtctcatc atcatgtgac ccacttgttg acaacacatg
ttggggactc 151440cagtctgggc agggacggga tgtcggagag actccactct
gaatggggcc gggaagtggg 151500gaggactcca tttcagatgg ggtcgggaca
tgggggttat gctgatcgag acagaaaagc 151560acattgtttc agccacatta
gaatccacgg aggtgttgtt ttgaaatcca gctggcccca 151620aggctgggtg
tatggtttgg gatgagaact atctggcctc cactggagga acaaacacag
151680gatgttatca tctaagctcc atggccaaga cagaatggaa gtcaaggttg
cgtatttgcc 151740gtagacttca acacagtgtc gtaatgcgtg acgtcaataa
cttgtttcta gtgtcttgga 151800agttgatctt tagtcgtaaa agagaccctt
ggatgcagcg agatttcctc tactcacacc 151860tctgttagat gtagtgaggt
tcttcacccc ccaaccccag atgtcagagg gcaccctgcg 151920cagagctagg
aggccatgca aagccttggt gtccctgtcc ctcacccgtg ggcaggtcct
151980gtgagcagtg ggggggccac ctcttgggta tggtgcagcc atggcccaag
cagggcttct 152040tctcagacct actaggacgg gagaaacctc ctggtgcttt
agccctgcgt tgatatgcag 152100caaatgggag ggaagtgggc acctgggagg
acaaatgcct gtagaggccg ggagtgacgg 152160caggtgttca tgaaaagaga
ccttgtgggg agggcaacac aacagtgtgt tctgatgtac 152220tgaagagctc
aactgaaaac aacaggagaa ttagcccaaa atccatttac taaaattgtt
152280tatctttttt tttttttttg agacaaagtc tcgctgttgt cccccaggct
ggagtgcaat 152340ggcgctatct tggctcactg caacctccgc ctcctgggtt
catacgattc tcctgcctca 152400gcctcccaaa tagctggtat taacaggcat
gcaccaccac gcccggctaa tttttgtatt 152460tttagtagag acgggatttc
accatgttgg ccaggctggt ctcaaactcc tgacctcagg 152520tgatccgccc
acctcggcct cccaaagtgc tgggattata ggcctgagcc accacgcccg
152580gcctaaaatt gtttatctta agattcatgc agtgaaagct aacttactga
gtgataaatt 152640tgcttagtga tctgtttatt aggttttcca aatttgctaa
ttgggctttg aacagctgta 152700aaagttctga ctgtaaaaga aagcttcaac
ttttggcatt catgatgctt ttctgagtat 152760taaactaaga tagatgtttt
acctgaagga tcggccacca atctttaaat ggctaaacaa 152820aagggttgct
aaaacataat ccaaattgac ataagaaata ccatttttcc aaccaaaatt
152880ttggcattca tatggctact tttacgtatt tcagctgcat ttgaacatct
ttttcaaact 152940ttagggtggt tggtgtatca ctgaggtctt ggatgacact
ttagctttga ttttgttttt 153000atgaattaaa attgtcatac caaaattttt
atttcaagca aatccaagag cataaaaaat 153060taaaatatta cttaaaatac
taagagagaa cagatatata ttttactaag catatgttga 153120atgaaattgt
tcaaatattt ataacaggca tagagtagaa ttttcttaaa aatatttttg
153180atggtatacc aatttgtatt ttctcagaaa catttgcctt attctttttt
ctgttgtgtt 153240tttcttacct gattgaaagc tcataatctg ttgttattgt
ttgttaacct ttaatgctct 153300gatttcagga gttcaaccta agcctgctag
ctccatgctt aagcctaggg atgagtgaaa 153360tttctggtgg ccagaagagt
gccctttttg aagcagcccg tgaggtgact ctggcccgtg 153420tgagcggcac
cgtgcagcag ctccctgctg tccatcatgt cttccagccc gagctgcctg
153480cagagccggc ggcctactgg agcaagttga atgatctgtt tggtaattaa
aattaaaatt 153540tatcttattt ttaaaaagca ttccagggcc agtatagtac
tttgcaccaa gtaaatgtac 153600aataaaggca gtggatctaa tacattgaaa
gcgtttacag aggtagctaa agagcagcac 153660gggtgtcctc ggctcagaat
ttcttcctgt gtgtttgcca ctttgccatt cattgacatg 153720gtcatggaca
tagggctcta agcccttgag gaaggctggg ccagacctca ggggagatgc
153780agccccaaac cacgtgcagt cctgtggacg gatgtgtaga tgtgccactg
aggaacaatg 153840tcttgagctt tcatcagatt ctcagagaat tgcttgactg
cctttcgaag ttgatgcatc 153900tgtgctcacg tttgcaccca cccacgaggt
ccttctgttt caggggatgc tgcactgtat 153960cagtccctgc ccactctggc
ccgggccctg gcacagtacc tggtggtggt ctccaaactg 154020cccagtcatt
tgcaccttcc tcctgagaaa gagaaggaca ttgtgaaatt cgtggtggca
154080acccttgagg taagaggcag ctcgggagct cagtgttgct gtggggaggg
ggcatggggc 154140tgacactgaa gagggtaaag cagttttatt tgaaaagcaa
gatctctgac cagtccagtc 154200acttttccat ctcagcctgg cagtaagtct
tgtcaccgtc aagttattgt agccatcctt 154260caccctcacc tcgccactcc
tcatggtggc ctgtgaggtc agccaggtcc ccttctcatc 154320tgcacctacc
atgttaggtg gatcctaatt ttagagacat gaaaaataat catctggaag
154380tactttatgt cttaagttgg cctggacatg tcagccaagg aatacttact
tggtttgtgt 154440tagtgcttgt aattcgcccc cagaatgtgt acacgttctg
gatgcattaa agtctggcct 154500gtatccttaa agggccatcg ctgtgctgcc
tgccctcagc aaggacacac tttgcagacc 154560cacagaggct ccgcctccac
ctcacaccaa agaaagggag gagtccaaag ggcatcagtg 154620ccattactca
caaaatgata aatacaccct tattctgaac cacgtggagt catatggttt
154680gtgatccctg tccttcaggt ttcagcttag tggggaagtg ggaaagtcag
cgtgtgatca 154740cagcacaggg tgattgctgc tgattatatt atgtgcctgc
tgtatgcagg atgaaatact 154800ttatatgcgt catcttattt gactctcaca
accccctgtg agataggctc tgttactccc 154860atttgacagg tgaggaaagc
aaggcttaga gaatttcagt gacttgccca ggtcctctga 154920gctaggaagt
agccattctg gcatttgaac ccaaggcctg ctatccctag aacccacgct
154980ctcaaattca acctatgaca gaggcaagcc ctggtgctgt gggagcccca
aggaagagcc 155040tctggcctgg tggccacgta gcccaggaga gatttctaca
ggagcccaca gcgctgaagg 155100agagagaggc agcagagtaa gggggctttg
tggcagagag gggactggca ctttggggaa 155160taggtgggtc aggactgaat
gtaatggagc catgtcagag ctgtccttct ggaagggcaa 155220gggcacctgg
acgcgctgcc cctcagtgct ttggacggtt ccacaactgt gattcacacg
155280gcttccccaa acgaaggtac acgagtgggc attctgtgac tcggtacttc
cctttaggcc 155340ctgtcctggc atttgatcca tgagcagatc ccgctgagtc
tggatctcca ggcagggctg 155400gactgctgct gcctggccct gcagctgcct
ggcctctgga gcgtggtctc ctccacagag 155460tttgtgaccc acgcctgctc
cctcatctac tgtgtgcact tcatcctgga ggccggtgag 155520tccccgtcca
tgaacggtgg gttcctatca tagttcctgt ctgcttcacc atgtttttat
155580tttgtgctgc ctgtttgcca ggtactaagc taggaattgg ggatggagag
gtagataaaa 155640tatgcatcag gaagggctgg gccccatctc ttactctcca
atatattgga gtctacactg 155700gaatttaact ggaatttgct tttttagtca
ttttatttag attttgaagt ttcagctttc 155760atcaaaaata cctctaaact
ttatgtctct gtgatctttg gtcttagctg ttttatgtat 155820ttagtcttat
atgatcataa gattaataac attacattca gaagattatt tgttttctgt
155880cagagttaaa atgtttgttt ttatactgca ttgtaatatt aacgtactgt
aaaataaaag 155940tggcttgttc ttttcaagga acagtatcct caacaagggt
cattagccac aatttttaaa 156000aaattggacg tcatagttta catgttagag
ggcgttttga agctttgtat ttttaaatta 156060aatgttatag agtgatgttt
tcatgtttca taattgtttt catctgtgca tttgtagcca 156120acttgaaaac
aaagatccag ggattactac ttaaaagcca gacttcttgg aggttatagt
156180gatgattttg atagtatctt gagccgtctc ataataacct cagggtgaga
gatggccaac 156240aggagacagt cgagggactt agaaatctga atgaaatctg
aagttcaaat cttcagacat 156300ataccactaa ccaagagatt ggtacctcag
tctagtattg tctgtttgtc taaaattggt 156360tctaaggaat ctaggctagt
ctgtctatcc ctttcaactt ttgtgaggct gcacaaatgt 156420aaaatgttga
ataaaaagca ctgatggaag tgtgtagaaa ttcttctctt tgttctgttg
156480taattttagt tgcagtgcag cctggagagc agcttcttag tccagaaaga
aggacaaata 156540ccccaaaagc catcagcgag gaggaggagg aagtagatcc
aaacacacag agtaagtctc 156600aggacccatt tttttcttac atgttgttcc
tccaggactt aaaaatcatt cacagagacg 156660tgcaccgcgg tgagtgtgga
ctcctggaag cgcaccgtag ctccgctgtg tcctgctgct 156720cctccctagc
tgtcagggag gctgtagtcc attgctttgc cagctctttt gtttccgagt
156780gaacacctta tccgtacaca tgcggctgtc tctgacccta cagaccagct
gggatgccac 156840tgggggagcg ctcccttccc cccgcacttc ccacactctg
cagttattct gagatccttg 156900agggcaggga acaggtttgt cttctttgtg
ttctcagaaa ttaatgctcg gcctctggtc 156960agcaagcaac aaccttttgt
tgagtgataa tgaataaata aatgtttccc acatgagtat 157020tcagtaacct
cagtgtcagg ttcagccatc tgttttggtg gatatttaaa agaaaattcc
157080gcttttccta cagaaaaaaa aaaaaatcca aatcccagtg atttaagcca
gttatagact 157140tagacatata ctacggcttt tcatgcactt tcctcccaat
tctagagtag gtattttact 157200aggaaaatgg tggcagtgcc tgttgggagg
aagattcttt ggccaagtgt cttttgttct 157260tgccagggcc cctaggctgc
tggggtgctt cagcttcttt agcccagtgt ctggtgggga 157320atggcccctg
ttgcctgtcc cacagaggtg ggggtgcctc acctggagcc tgtccacaca
157380ttttacacag cacgcttacc tggagcatca ggcatctttt ccatgctctg
tggctcagga 157440aacacgcctt ttcaatcatg agtgcaccag tgcttttggg
ctttttctcc ccgcttttgt 157500gcaatcctgg ttgtggatgg agttttcctg
tctttagtct tctgcatagt acttttctct 157560tctggttccc ggttcaaggt
tttgtaatta gagaatgacc cagaagcaat ggcattttaa 157620tgcacagcca
aggacttctc tgaatttgta tctcaaacct ctgtgggtcc ttcaggcttc
157680agtttgtgat ttcatgattt cttgttgcta cctaaggaat atgaaaacac
ccacctccct 157740actctgcatc ttccagccga gtggcacctc aggctgtgga
tcctgtgctt ctgtggtgag 157800gataagaata gtgccaaccg tgtggattga
aatcaatcag ttaatccctc catgtaaagc 157860acctggaacg gatgacagtc
ttgttatgaa tactcaacaa atgctatcat gatttttagt 157920tagatttcca
ttgctttaaa acagttgaga catcttggcg gtttgagtta gagcaacggg
157980ccctgaagtg ggttctgttt gggtgaagat gattatgctt attccccatg
gccctcttta 158040ggcaagagtg ggaagctttc tttgtttttt taatcacctc
gataggacgt tacttcttaa 158100aggtcatcca ataaatatta ataggccggg
cgcggtggct cacgcctgta atcccagcac 158160tttgggaggc cgaggcgggc
ggatcacgag gtcaggagat cgagaccatc ccagctaaaa 158220cggtgaaacc
ccgtctctac taaaaataca aaaaattagc cgggcgtagt ggcgggcgcc
158280tgtagtccca gctacttggg aggctgaggc aggagaatgg cgtgaacccg
ggaggcggag 158340cttgcagtga gccgagatcc cgccactgca ctccagcctg
ggcgacagag caagactccg 158400tctcaaaaaa aaaaaaaaat attaataaag
ccaactcgtt agcgtggggc ttaattgctt 158460aagtccaatg agaagtcctt
ctctatccta ggaagttgcc caaactgtag aatctcgtgg 158520cctgtgggta
atagccacgt aatacacact cactgcctca acaaatcata ttttagtagg
158580tatgatattc tagactcaag acaccattct gtggatcttc ccaagggtgt
gaagtgtcca 158640cagcgtctgc cttgggagtt tccatgccca ccagaaccat
gccccaagcc cctcaagcac 158700tctgacctag gaaagccagt gaagcaagga
tgacaacatg gccctttgat actagctgag 158760ggacagacac aggtcctggg
agaccagaga aagacgaggg gcagaggagg tgtcctaaag 158820gaagtctgag
gctgaggagc cacaggatgg cttccagctg tcacaggctg ctgctggcct
158880tatcacagag agtgggccag agggctggga accaaggcca gagctcaggt
tcaggaccat 158940tccagcaatc ccagcagaaa atggggagaa ttgtatggta
taggcggata tgaaggtaga 159000atctgcaggc cttcagtggc caactcagag
tctaagtgga ttccacagtt acagcttgag 159060cagctggttg taggtcatgc
tttctacact gggcatatag gatgtgtttt ttaaaaagtc 159120ctctcttaac
cgttgcttgt ttagatccta agtatatcac tgcagcctgt gagatggtgg
159180cagaaatggt ggagtctctg cagtcggtgt tggccttggg tcataaaagg
aatagcggcg 159240tgccggcgtt tctcacgcca ttgctaagga acatcatcat
cagcctggcc cgcctgcccc 159300ttgtcaacag ctacacacgt gtgcccccac
tggtgagtct gctcgttcct tgcagaagac 159360caagtacggt gaaaggcacc
ggtaggccct gggctgggca cacgtgagag ggcgggacag 159420aatccccgca
gcccagaggc tgcctgctgt ggttctggtg cccactgtgg ttctggtgcc
159480aggctgcttt cctcaggcac cacgtgtgga ggtcgctagt agaaatactg
ggttttctaa 159540aatgaactga ggccctacat ccctaagaga ttagtgttag
acctgattct agagcaacta 159600gaccactttg cttaatagca gaccagaaac
cacaccccct cgagtgagtg agattttcct 159660ttggagataa ttcatgtttt
tctacacagt tttgcagttg tcttcagaat tggtttaaag 159720taggtgttat
tgccaggcgc agtagctcat gcctgtaatc ccagcacttt gggaagccaa
159780ggtgggcgga tcacttgagg tcaggatttc gagaccagcc tggccaacat
ggtgaaaccc 159840catctctact aaaaatataa aaattagcca ggtgtggtgg
tgtacgcctg taatcccagc 159900tactcaggag actgagacag gagaatcgct
tgaacccagg aggcgaaggt tgcagtaagc 159960cgagatcgcg ccactgcact
ctagcctggg caacagagca agactccgtc tcaaaaaaaa 160020aaaaggtagg
tgttattgat cagaaccctt gtttcagata acatgaggag cttagcttga
160080ggagagtgag ggttgatgga gggggactga cttctgccca gtgaaatggc
atcatctccc 160140accagcccgc tgaaataaga tgatggggcc tgttccttag
ggcctgcagc atcctcaggc 160200aggaaagaaa ggccgacctg gcagggtgtg
agccagcagg tgtaggtcag ggagaatgga 160260gccaggtccc agggaagagg
cttgtggctg cctgagaagg gtgcgtgcct gcctgtgtgt 160320gtgtgtgcac
gtgtgtgtat gtatgctgga gagtctaggg aggcttgctc caaggacgca
160380gtattgtttg atcctgagag ataaggattc tgccgcaggg aatgaaggta
ttccagatgg 160440cgggcttatt ccgaagaaga ggccagtgcc tggcggtgct
ggaagcagtt gcagaacagg 160500gagttgtagg ctttcctggg aagagagcag
caggggtgct ggagaagcag gccacacttg 160560ctgcatgggg ttgctctcgg
ccccactctt ggtgcacagc gagtcactgt gggttcatta 160620gcatctggtt
atgagacagt aactgctcct ttggaggggc tcgtggagac catgcaggag
160680ggcacggtct tgaggtcatg ccgtccagag cacacctgag gataggccag
gacgggctgc 160740acgctgtagg taaaattcct ccagcaagct cttcactggc
attgaggagt tccctgagtg 160800cggtcatctg gaaggcagct gtaacaggca
ctgcagtctc tccctgggtg ggtaccagag 160860aggagcatag gggagcataa
ccgatttaaa gagagggctt tcctgtggtg aggtaagaga 160920ttagctggtc
attatcatag agccccctct gcctttgtgc agatgggctg tgggaatcct
160980ggggttccgt tgggtccttt gtcacctcac tgaaggcatg taagctgagc
tggccagacc 161040gtgagctgat cctgccactt gaacagcatc aagcctgcct
ctggattctt ctgtgcatgg 161100cacttgtctg agcacctcac gcacagagaa
ctggacttca gagtttacag aaataagctg 161160tatggttcat tttcatgcct
gcttgccaat aaacatatct gagctgaacc tcattgaacg 161220cctgccttta
ttctagcaca gcacctgctg tttgtgggcg aggggtgctg tctctaactc
161280ctgcctgctt ctcccagcac tccctgagtg gggtgtgcca gcagcctcag
gatgaggaca 161340ggaagtggga gggcagagca gatttgggag ggccacttga
tggggaagga agtcccagga 161400agcagttgga gctgttttct gggggagaag
gtgccagctc tgggacagtg ttggggtagt 161460gaggagggag cccagtggag
agaagtcggg cttcctgctt cctcacagta tgtctgtcct 161520gactcaactc
ggatgatgtc acttcctttt catcttctca ggtgtggaag cttggatggt
161580cacccaaacc gggaggggat tttggcacag cattccctga gatccccgtg
gagttcctcc 161640aggaaaagga agtctttaag gagttcatct accgcatcaa
cacactaggt actcttgggg 161700cctctccttc aggtcaccat tgtcggacat
ctaccgggag gaaatccaga gcccccagta 161760ctgggatctt ctcatttgac
tccagaaaag atttaagcat gataataata caaacctatg 161820tgaatacatt
ttgcagtgtt ggcaaaactc cttttatact gagaaaatag atcccagttc
161880ctgtgttttg tggcttgaat cccagctttg tgtattccgg gcttgtttga
agtcaggaaa 161940ggttcatgtg tagtggacaa cgtgagacca aattctgcct
tagattttgc atttaggcta 162000aacagtggca gcacttgtct cagaatgttt
tcttgtgttc accagtctga tcctgttgtg 162060tctcagtggt ccattttctc
atatgggaac aagcagacgg gagcagatgg agtcaggttt 162120cttggcactc
gccttcccca gagcctagag gcagcatggg gagaaagcag gcttggggct
162180cagacagtcc tggtctgctt ccagccctcc tacctgagca gcgcagggca
agtccgtcta 162240acctctagag accctcagtt ttgtcatatg taaaatgggg
gtcgtgtcta tttcatagaa 162300ttgttgcaga tttagaaatt acatttctaa
acaaatgtta ccccttattt ctaaataagt 162360gtctaaatga ataagtcacc
acttttgccc ctatttgatg gcaagaggtg tgatcttgtg 162420gtgggactgt
aatcagtcag ttctcagtga ctgtgccctg ctgtggtgtt tcctggaatg
162480ttcctgtctt gtcctagaaa gtctggcagg ggcaccctga ctccactgtc
cagtcctctc 162540cccagtccct cgggcttctg cagatttgag gcttgtttgg
atcccagaag gttgtggcag 162600gagacacctt gcctctactt tcccctttat
aattcaatgt ccaaagagag ccctgagcag 162660gtacctcacg ccagctgcct
cacggagctc ctcctcttcc tggctgtgag gatcggtatc 162720agtggcctcc
tgctctctcc cccttgccta acacgagcac ctttgcttac ttgggtgccc
162780ttgctcttga actgcccatc ggacgtgcgt gacccaagac tgtgccgcag
tccttgcctt 162840gtctgtgctc attttctttg ttcatttttt tccctgtaac
gtaaattgtt atatttgtct 162900gtatctgtgt ctgaatcagt cctgcacgct
ctccttctct ctgtctcttg ttctttcttt 162960accccgttta tcacggggac
cccgatgtcc attgctctag ttctcctgtc ctaagcaccc 163020catcccgtct
ctctggcctt accacaagtg gcgtggctgc ctcagacatc atgatgggga
163080catgaagcac agctgtcaga aacaactgtt cgttagatac actcgaatgc
agctcatcaa 163140tagggatgga gggtctgtcg gatgtatttt cactgaatcc
ccgttcctac cttgatacac 163200tctttttaat ctattcttct agacaggtca
gaggaaccat tactttgact tttaaatttt 163260tagcagcttt attgaggtag
aattcacata ctacagattt cacccactct aagcggacag 163320cttggtggcc
attagtttta tccacagagt tgtgcagcca gctgcacagt ctcagggctg
163380gactccaggg aagattttag cccatttagt gagtggggca gaagtggccc
tggccctgca 163440cgaggttgcc tgcatgggcg tccctgccct gtccctgtgt
ctgctccact gggggttgac 163500caggctgcca gggccgactt gggcctgtgc
cacctgcctc tcatgtgtct cggacagtgc 163560agccgatgtc tatacttcgg
tttcctcaat gatgaaatgg aggggatagt gttccccgca 163620tcatagaact
gtgtgaggtt taagggactc actgcccttg gcgtggagcc ttctccaggg
163680gccgtgctgt gtcggcgtag ctgtcagctc tccgttacag gcttgagaag
ggttgacact 163740ctctcatgta acatttatat ttctaggctg gaccagtcgt
actcagtttg aagaaacttg 163800ggccaccctc cttggtgtcc tggtgacgca
gcccctcgtg atggagcagg aggagagccc 163860accagaagta aggccacacc
ctgtgctggt tggcacatgg gcagttatgg ccgcttgcag 163920gcctttggtg
gggaataaaa taaggcagca agctggtgtt ctttttttct cttaccttat
163980ttttgaaaga gtagctgaat ggtgtcttga ctgatattcc agagcaggga
caaagcctgc 164040tgaggtctgg gggctgcgat taccaatggc tggaatgcat
tttattacgg tgcattccat 164100gttaaggatc aatacgattg tgccctttct
ggaaaatatc ttttagttta tcaatattca 164160gaggagtgta ggttgaatta
aaatgaaaag gcactttata aaggccatga gtagtacctg 164220gtttcatttt
tctaatgtct tgcagagatt ttatcaggct tcttgaagtg ttcacgtaca
164280ttacgctaac acgatattaa taataactgt gctctggtac agcggagcca
gcagaatggg 164340aagttgtgga atgcaggccc ttgattctga tagaaggtgt
ggtttgaact cacagaaatg 164400acagtttgga gggtagacat atgtcacaag
tcatcaagat tgtctttaaa ttcatgcata 164460gaagctaaca gggtgtcata
agcaaggcct gtaaaatgta tgagggaatt caaagataat 164520ttattaaaaa
gtaattcatg tttggagttt tgtgcccaaa ggagtccttg atttgaaaaa
164580tgggcttttg cccatcagat tgtttcaggg cccgtgtgtg cggaggccct
gccttgtgcc 164640ccgtgagctc agcctgacag aaatcctttg gtagcactta
aggctcctct tcctcccatt 164700gaggcaggga agactctggg ttctgcaggc
agaggtggtt gtgggtgtct tgctgctctt 164760gttgacatgt gggctctcct
tccaggaaga cacagagagg acccagatca acgtcctggc 164820cgtgcaggcc
atcacctcac tggtgctcag tgcaatgact gtgcctgtgg ccggcaaccc
164880agctgtaagc tgcttggagc agcagccccg gaacaagcct ctgaaagctc
tcgacaccag 164940gtttgcttga gttcccacgt gtctctggga catagcaggt
gctggggaca gtgggttccc 165000cgctgaagcg tccagcagct tcaaccaggc
cgttttcctt cattgctaga attgaaaaca 165060ccgtccgtgt ggcctgtgca
ggagatgcag acccaaaggt ggcctcctgg tcagtgagaa 165120gctggaaacg
tgacaggaac tgacgtgggg ttattgagca tttaggggaa gacgttagca
165180gagcaggaat gagcaggcaa ctagtagaac acccacttaa gggctcacgg
acaggtgctc 165240acttaggaag tgagtttcat ttggtattac accaggttcc
tttaggcaaa gcggagggaa 165300agttctggtg tttttcactt gtaagatttt
gaaggaaaca aaacactctt tacctttttt 165360ctaaaatgta ggtttgggag
gaagctgagc attatcagag ggattgtgga gcaagagatt 165420caagcaatgg
tttcaaagag agagaatatt gccacccatc atttatatca ggcatgggat
165480cctgtccctt ctctgtctcc ggctactaca ggtacctgag ggaaagggtg
cgggggagcg 165540gttgtacttg ggctagaatg agagaagact ggcatgctca
ccacaccagt gatgcgggaa 165600gacctgagtg tggtctgagt tggaggctgt
ggtgctaaat
acgctgcccc tttcataagc 165660aggagtctta gtcaggccca gggaggaagt
aaaatctgga aatgaatgag aagcattctc 165720tcctgccagt caagaaatga
gaagcgaaag aattctcacg ggctgtaaga ccagcaggat 165780ttaaaagttg
aattagttgc ttatgttaag aactcaacca agttcatcta cacaagctga
165840atctccagct tttcctaaga aaccatgtgt ggcagtggct gcagggcagg
gcacagctgg 165900gcctgagcac cccgctccct gcacctctcc cctccctggg
ccctgcctgt cactgcccac 165960tctcccacca agccttccgg ttgtgtgcct
gccctatcac aggcatcgga gcttgtcacc 166020tggtttaaaa gaagagagtt
gtgtggggat ttgggatgca cgtttttcac tcaaaagtat 166080tttagcgtag
agctctgtga ttccgtagct atttaggagt ttaagcacct tgaaggcttt
166140aattgcagaa agttctatgt ggacgtgcaa tgtgttatac gcagtgtcta
tgagactcaa 166200atgtttatta gggcgttgaa gtaaactgag cacttggagg
gccatggatc cagccttcaa 166260ggagctcata agtcaggagg acccaggagc
aatgacctgt catagaaggc agaaaagagg 166320ggcacagagg tgggtgggag
gcatacacag gcagctcctg gagctccaag gggagcaagt 166380gcttccaggg
aagggggcgt ggaggcccct ttggaggagg caagttgatc tggggtctgg
166440cagagggtta gctggggaca tttagcggga ggctggtgcc cgggaattgg
ggggatgccc 166500agcagaaaga catgaggagg ctggcctggg gcgtgggggg
gtgtgaaagg ttaagtgggg 166560gcattatcct gctcccgctc ctgccggctg
tatctggtca gcctgggcac cgaggtgggg 166620ttctggaagg cactgttcac
caaaatgctt atctgggtcc cccagagagc ttgcctgcct 166680ggactgtcgg
ctcgcctgca actgctgact cctaagcttt tgcagctcag cccacaacca
166740gttcctattc acagaggtgg gagctgaggg gtgacaagtg actgctgcag
tcttatttgt 166800catagagaaa aagtgacaga gtccagcttg cccactggcc
ctgccagctt aactggttat 166860aaagtgacaa atccccaaga cccacagggc
tctgcacaac ctgggccctc ctgccagtgg 166920cggcgagggc aggtggctca
cggctgggtg cctgtctggg caggagctgg gctggtatgg 166980ggtgggcctg
cggccctgcc cccctgtgca gatcaagact cagggtgctg gtgttcacag
167040gtgccctcat cagccacgag aagctgctgc tacagatcaa ccccgagcgg
gagctgggga 167100gcatgagcta caaactcggc caggtcagtc tcgcgccccc
gccgcctggc ctctgtccgt 167160ttctgtcctc agactttggc gcttgacaca
cccaggagaa aagctcagtg cactttttaa 167220atgaaaggaa gttttccttt
tttttaaaaa aaaatttaat gttcattgtt tttatctgtt 167280ttattcctag
gtcccgcaag cagaggaagc attagttttg tttttattta tgttctgtat
167340tccagaaagt agttaagaga cctcacatgt agcgatagag atgtgtgtaa
gagacagtga 167400gagggcgtga cttggactta agcaaggacc gtgagacaca
aaaagggggg tgaggacaga 167460gtggagtcag ctgaaatgct caggaggaag
tagacgccat gaagggccat ggtatggggg 167520gccgcaggcg tggccgtgag
tgtccctggg gccagctctt ggggggctcc ctgagtgtcc 167580ctgtccctgt
ggccagttct gggtgggagc cccgtgtgca ggcagacagc tcggccactt
167640cctagcaggt cacattggtc tgtgcttctg tttcctcctc agataagtga
agggattcaa 167700gggtctgggt gtggtggcta acacctgtaa tctataacat
tttaggaggc tgaggcagga 167760ggcttacctg agctcaggag gttgaggctg
cagtgagcca tgattgcacc actgcactcc 167820agcctgggca acagaccagt
actctgtccc ttaaaaaaaa atgtaaacag aaacgtaggg 167880ccatttgcat
atgatggcac atggcgtgga gccctacagg tgtatgctgg gcggggcccg
167940gctgtgctgg ccgacttgca cctttccctc caccccggtg ctgtgtcttt
cgctcaccgg 168000gttcctgatt tagtgaaagc agttgtgcag gacagttctc
tttgtagctt ttgtttctgt 168060ggaaatgggt cagaatatgg tgtttagaaa
cacttatgag ctctgagagt ttcctcttct 168120gagttcctgg cctgcagcct
tcacagcaga aaccctgtga tgtcacaagc ctgtttctgt 168180tccctgctct
ctgcctgtac tgtcctgttt tgtgcctgcc ggtttcagtg acaggaagca
168240gggagctact ggaccagcct gtatttttct agacatagtt ggaaaaagaa
gtcccactct 168300tctgtccttt cacctttgac agatgtttcc accccaagat
aagtgaaaat gaccaatagg 168360atgcactgta tttttcatga aagtgtttct
gaagggcagg ctgagagtga gaggcctggg 168420gctcactggg tgcctctggc
cttgtcctgg gcccagggac actggtctgt gcccgaggta 168480ttccctatcc
ccccaacccc gctgcatttg gccacatcct tcaatgtttg cgttgtgtcc
168540agcgtccgca aaccaactgt catgggatca tactggggct gaagtacggt
cccacccctg 168600ccctgtctgg ggctgaagta cagtgccacc cctgccctgt
ctggggctga aggacagtgc 168660cacccctgcc ctgtctgggg ctgaagtaca
gtgccacccc tgccctgtct ggggctgaag 168720gacagtgcca ccccttccct
gtctggggct gaaggacagt gccacccctg ccctgtctgg 168780ggctgaagga
cagtgccacc cctgccctgt ctggggctga aggacagtgc cacccctgcc
168840ctgtctgggg ctgaaggaca gtgccacccc tgccctgtct ggggctgaag
gacagtgcca 168900cccctgccct gtctggggct gaaggacagt gccacccctg
ccctgtctgg ggctgaagga 168960cagtgccacc cctgccctgt ctggggctga
aggacagtgc cacccctgcc ctgtctgggg 169020ctgaaggaca gtgccacccc
tgccctgtct ggggctgaag gacagtgcca cccctgccct 169080gtctggggct
gaaggacagt gccacccctg ccctgtctgg ggctgaagga cagtgccacc
169140cctgccctgt ctggggctga aggacagtgc cacccctgcc ctgtctgggg
ctgaaggaca 169200gtgccacccc tgccctgtct gggatgttta gcccctagat
gccactggac tgagccgcta 169260cttgcttttg ggaaagaggg gtgggggtta
ggggtctggg cgaggggagt gcaggggctc 169320ctccttggcc tgagagctgt
tcatacagac tcctcgccca ctccctgcag ggtgctgggt 169380cccagggggg
aaatggccct tggtgccaag aacgtgagtt ggggctagtg ccagtgatga
169440tggagaacag ctttttatgg gcacacagcc cacagcactg tgccaagtgc
tcgaggcttc 169500ccgagaacca ggcagaaagg aggacagtcg aggtgtgctg
actgcgtggt ggctgcgtga 169560tctagagcgc gggtcacaaa ggcgcgaggg
agctctggcc ttgggtttac cgcaatgact 169620gccagtgcgg gagactggaa
aaggaatctc acgtattggt tccgtgtttt ggggactcca 169680ttcagatgtc
acttaggagt gaaagcatcc cttcgtagag cctctttctg tgtcaccctc
169740ctcagctgct cctggggttg actggcccct gattcatgcc tttagcatgt
gctggagctt 169800cccagcagct gtccagcccc tgccccaccc tctctgtggg
ctcccttgcc cgtaacctgg 169860ggtgtctgaa cgacccttgc taaggggcag
actgttagac ggtaggcatg tgctgagtcc 169920cagtggccac acccacccac
caggagcctg gcactgtggc cgcagcactg agcagtgccc 169980cgtttctgtg
gcaggtgtcc atacactccg tgtggctggg gaacagcatc acacccctga
170040gggaggagga atgggacgag gaagaggagg aggaggccga cgcccctgca
ccttcgtcac 170100cacccacgtc tccagtcaac tccaggtttt ccaatggcct
ttttcttttt aacagaaatt 170160tgaaatttct tatcagtcat ttgatttgtt
tgaggtgctt cttgaaatga gcctctcatc 170220tcatgtactt ggaaaatacc
catctcgcat attccacagg aaacaccggg ctggagttga 170280catccactcc
tgttcgcagt ttttgcttga gttgtacagc cgctggatcc tgccgtccag
170340ctcagccagg aggaccccgg ccatcctgat cagtgaggtg gtcagatccg
taagtgagcc 170400ttcccattcc cctcacacct gcacgtgcca cacgcaccac
acacgccaca caccccacac 170460acacacaccg cccacacaca tgccacttgc
acacacaccc ctcatgcatg caacacacac 170520acaggccaca cgcaccatag
acaccacaca cacatgccac atgcacacac atacacggca 170580tgcaccatac
acacaacaca cacagcacac atgccacaca cacacgccac accacatgca
170640ccacacacat gccacatgca cacacactcc acatgcatgc accacacaca
cacacacaca 170700ccacacacac cacatgcacc acaccacaca ggttacatgc
acacaacaca cacatgccac 170760gtgcacacac cccacacacc acatgtatgt
gccacacaca gcacacaacc acacacatgc 170820accacacaca tgccacatgt
gcatgcacca gacacatggc acacactaca cacacgccac 170880gtgcacacac
cccacacaca tgtacgcacc acacacatgc cacacacaca tgcaccacac
170940acatgccaca tgtacacaca tgtatataca caccccacac cacacacaca
ccacttgcac 171000accacgcaca cacaccacat gcgcacacac acaccacata
cgccacatgt acacaccata 171060cacacaccat acatgcacca cgtgtaccac
gcacccacac agacacagca cacgcataca 171120ccacacacac acgcacacat
gcgtcccgca cagtaatgtc tcttgggtgt aagaacacga 171180cttgccagta
gtagcgttct ggatgcgttg cctggattct aacagcgcga ttctcccctt
171240gccctcctgg ttttccacat ctccagcttc tagtggtctc agacttgttc
accgagcgca 171300accagtttga gctgatgtat gtgacgctga cagaactgcg
aagggtgcac ccttcagaag 171360acgagatcct cgctcagtac ctggtgcctg
ccacctgcaa ggcagctgcc gtccttggga 171420tggtaagtga caggtggcac
agaggtttct gtgctgaagc cacgggggcc catctgcctt 171480gggacctggt
gttggccaga ggtgccgggt gcggctgcct ccttccaaga gttgacccga
171540accggactcc acggcccacg tgagctgcag tgcttctcag atggaggggg
ttcagcgacg 171600gtcagtgcca ttcacaggtc actgtgatgt gggttgtggc
ggccaagcca tggtttgggg 171660tcccgtatcc ctgggcttat gacatcattg
tagtagccca tccccacaga accacggtgt 171720gtggtggcgc tgaggcatcg
tagatggtgg aaatgctact ggcttcccca tgctctgccc 171780tgaggcctga
ctgcctcact ccccttctca gttatgttcc aggccccccg agcttcctgg
171840ctggacagct tctctcctgg gggccgtttt gtcacagtga ccctgtgttt
ctagtcccaa 171900atctgggtgc tatagtctct ttttagcgtg gtggttgtct
tagtcttttt tggctgctac 171960cacaagttac cttagactgg gtaatttata
aacagtggaa atttacttct caccgttctg 172020ggggctggaa gttttcatgg
tcaaggtgcc agcagatttg gtgtgtgatg agggctgctc 172080tctgcttcat
agatggcatc ttctggctgg gtcctcacgg tggaaggagt gaacaagctc
172140cctcaggcct tttagaaggg ccccaatcca caagggctct cccatcatga
cctcatcacc 172200tcccaaggcc ccaccttctt gtactgtggc actgcaaatt
aggtgtcagt gtaggagttt 172260caggagggat agaaacattc agaccatccc
agcggtcaag tgttcatcct cttgagttcc 172320tccttattct gcttctggtt
tatcaggatt cagccagtgc agcatggtac ctgtattctg 172380tggcacatca
ccacatggta tttgccaagt atccatcacc tgcacacgtg aaatcattgc
172440ccgtgggtcc cgacatctgg cgaagcatat tcaaggatgg cagaactgtc
agagctggca 172500cctctggttc cttgtcatgt ggcattacct agtaatccat
tttatgatag caatggaaac 172560tcatttcttc aacaaacacc tgagtggctg
ccgtgtgcca gccgtctggg gcccttggtg 172620agaatggcat ggtggtgccc
atcagggcct gcctagcccg tgctctggac gggctcctgt 172680gtgtcaggaa
cgacaatgct gtcatgacgg tgaatgattt ttttttttgc catcactcca
172740gccgctaaca tttgcggagc tcttcctccc gcacccccac ctgacaaggc
caagggtgac 172800cttggcccca ccctaggcgg ccaaggtcag aggttagctg
gcttgtctgg gtcacacaaa 172860atgcagcaga ggttgaggtg agcacatgtc
cgtgacctgg agcctgactc cctctctgcg 172920agtcttgact gctcttgcct
agactctgtc ctccccgagc ccaaacgcca gtcatcttcc 172980cttgtgggtg
tccttcagcc tggtgccatg ctggtgactc agcagccgtc cagggagtgg
173040aaacaattga gtgtgtgggt tccctgtgtg ggcatctctc ttcacggcga
acaccctctg 173100ggtgttgccc acacgatgtc aaagcggctc ttggaagggg
tccttctcct ttgtgggaag 173160tttcagctgc tgggctaact tgaattgtaa
ctgtggtttt gtgctcaggc ccagatcccc 173220ctaggcaagt gttgtgccat
cagtaatcaa atgagaaata atcattttga aaagcagatc 173280ctaaggcagg
atggtcatgg acactcactc ccagctcttt gtgcactcat gctttctgga
173340agatggccat cctctgtgaa ggttttcagc gcgtcatgct tggtacccac
gtatccagag 173400catgtcgttt tgaggtattt gcccaccgtt gtgaaatccg
tgccacccga gagcaggtcc 173460tgatgtgggg ctttcagaag tgggacctgg
ggccgtacgc agtccttagg gaggggccgt 173520gtggcgttgt gcgtgtgagg
ggatagcaca gggtgaggtg ggggcccaag aaggaagtga 173580cccacaaaga
acagcctcct cttttggtcc ttgttcctgg gatggctggg agtggcttct
173640gtgtcgtccg gccatttccc ctgcggagag gctcctacca ctgccgagaa
cctcatcatt 173700ccacaaaaac aagaggccgc ctggccatcc agcgctccat
gggaattctg tgtccccata 173760gtcttgggct gaaggagggt gacattcctt
gctgacttct gcaggggtct cctcactgtt 173820aaagagcaga ttgaaagtga
agaacgtggg ctaagtgttt aggtcgatat ttaaccctgc 173880taggttttgg
atactaagtg aaattgaggc cattttggtt gaagttgaca gaaaccacta
173940tcagggatcc ccaagactac cccaggcttt tctagaaaga ctctcagcta
agatgtgtta 174000tggtaaaagc acacaaaaca aaatcagcaa agaaaattag
caagggcaga ggcccatggg 174060gcgatgtccc gaggacacca ggcttgagct
tccagaatcc tctcccagcg gggtcgtgca 174120ggacgcactt aactccccgc
acagtgagcc gtgacagcgc gtgtgcagtg tcgtcgccag 174180gaaagcacac
tagagactcg gtgccagggt ttttactggg ggctgggcac atgggcaccc
174240tctgcctgcc tcgtgcccag actctggact cccggaggga aggcaagttc
tcagcaccaa 174300ccctggtgcc cacacaagca gctgagcaca gggagcccct
cctcagtgag gatggtgggc 174360accgtcccaa caccagccag gggccagcct
tgcacacagg cctctcagga tggtctccgg 174420cctgctgtgt agtctcttct
gcacacaagc gtgagggcag cgcccccgcc tcggctgtgg 174480ggaggagcca
ctgggacgtg agctctggtg gcatgcagca gcttttgtct gtgtgtgcct
174540aggacaaggc cgtggcggag cctgtcagcc gcctgctgga gagcacgctc
aggagcagcc 174600acctgcccag cagggttgga gccctgcacg gcgtcctcta
tgtgctggag tgcgacctgc 174660tggacgacac tgccaagcag ctcatcccgg
tcatcagcga ctatctcctc tccaacctga 174720aagggatcgc ccagtgagtg
ggagcctggc tggggctggg gcgggggtct cagaatgagc 174780tgtgaaggaa
gcagcatcac cctctccaag tgcccaggct cctggccaga tggcaggcca
174840ggtatcagtg ggaacccagg tgggtgccat ggctgaggtc agtgagacgc
aagagcacag 174900gtgcgtccta gaggcttcct cgggcacctc cagcgagctg
gagctctcgc ctctgctgct 174960gtctcatgtg gcgcttagca cactctccca
cgtgcccatt cctgactctg ctctcgaggc 175020catcggctct cattctctgc
tcccagaacc ctgttattac ccaggctagc ctcctctctg 175080caccttcccc
gccctggccc agtacctccc tcttgtttcc actgtgattc cgacctcacc
175140ttatcttaaa gctgctggac ggcaggttct gtacacacgt gtccttgaca
aagcacggct 175200ggtgccgcaa cccctcagcg agcaagtcaa gctcttcaca
gcgatgtctt acaagcgcag 175260agggctctgt gacaccctgg tctcaccgcc
actcttccaa agtcgcagag gctttagcag 175320agatgggccc agcctctctg
agtcataggc ttctgcacac gggagctgtc tttagaggga 175380gggtggaatt
tcatcagcca cccacatggg ggagttgagg gcaagaatta ggagcaaaga
175440tgggaagggg tctgggagga atggccagtg atcccctttg acaagtgggc
aggaaacggg 175500ggctaggtca aagttgagtg gaagacctgg agggagacgg
gaaggtctct gtaggcacag 175560ttcagacagg agggaggtgt gagccagggc
acatgccggt ggccgtctgg caggatttgg 175620gacatgctgg agcagggaca
gcggctcatc aggggccatt gccctcatcc aggccagagt 175680gtcacaagcc
cgtggggagg cccttctcgc ctgtcatcct tgctgggcag tgggtgctgt
175740gctagcagga caggcggacg gctggcaact gtctctgcat ccctggagcc
tggcataggg 175800ccaagtcaca cggggcacag gcctgcaaat caggcacata
tgttggtgca gtgacgtgat 175860tttggggggc agccccagaa caggccccag
acacaggcca aagccctgcc tgtgctggtg 175920tgttgggctg ttctatggct
cttgctgtgg gcatggagga ctcagggaag gagagttgag 175980gtggtccagg
agttgcgttt gggatgcaga gagcttgtgg catccaggta gaaatggtgc
176040gtggggctga cctcagcacc atgggcagag gggccgtgtc acgtgcctcc
gaggtggagg 176100tgggaccacg tggtgacaga tatacgcatc actgggcacg
tttttgtggg tgttgggggg 176160catcgtattg gctcctctgt tcacagtggc
cactcattca gtccctggct accaggtcct 176220cactgtgcca tggggaaggc
cggcgctgtc gggggatcac agaaggcagc acgtcatgat 176280ggcatgtgcc
atgaaggaaa agcacagggc actcaggaag tagaggggac tggcctgggg
176340tgtgggaatc tagggcctcg ttgagggaca gagagaggaa gtgtgtggtg
gccagcatgg 176400aggtggccac aggggaggct gagttaggcc gagagggcag
ggcgttgggg aggtagacgg 176460gctcagccac tcagggagtg gtcaagcaga
ggctgaaggg tcaggccagg ttgcaggggc 176520ctgggggagc cactcagggt
aggcgctccc gggagcccgc ctggcccata gctctacact 176580cccgcgtggg
gccggacatg ctgtgaagcc ctctccacgt tggatggggg tggctgagcc
176640tggatgctgt ctcccgtttt cagctgcgtg aacattcaca gccagcagca
cgtactggtc 176700atgtgtgcca ctgcgtttta cctcattgag aactatcctc
tggacgtagg gccggaattt 176760tcagcatcaa taatacaggt gagtgggccc
tggctgtctt cctctgcaca cggggagtgg 176820gcttcccttc tcttttcctt
gcaggatcat accagtgggc cagttttgac ttggtcggga 176880ggaggcatga
acacctgaga ctgtgcagcg attctttgac acagaggcct ttctccctgt
176940gcagatgtgt ggggtgatgc tgtctggaag tgaggagtcc accccctcca
tcatttacca 177000ctgtgccctc agaggcctgg agcgcctcct gctctctgag
cagctctccc gcctggatgc 177060agaatcgctg gtcaagctga gtgtggacag
agtgaacgtg cacagcccgc accgggccat 177120ggcggctctg ggcctgatgc
tcacctgcat gtacacaggt gagcatgtac acggtgccca 177180taaggccagc
ccaagtcctg ttcaagggag gcaggagcat gctcactcaa gggacctcga
177240ctaggtgccc tctgatttca cacttctggt gttgccccaa gccggcccca
tcaccttgca 177300agaaaggctc tggagccccc agggctggag tacctggtca
gggttgaccg tccctgtggt 177360cactcatccc atgtggctga gctgggctgg
gtcctgggca agcaaggggc tgatatcacc 177420tgctttcaga tctccaggga
ctcactggac ccctgtgtac aaagcactgt ctacagagcc 177480tattgggttg
tatagaggta accttcgtac tgaacacttt tgttacagga aaggagaaag
177540tcagtccggg tagaacttca gaccctaatc ctgcagcccc cgacagcgag
tcagtgattg 177600ttgctatgga gcgggtatct gttctttttg ataggtaaga
agcgaagccc catccctcag 177660ccgttagctt ccctagaact ttggcctgaa
gctgtgcttt tgtgtgtgtc tgctgatccc 177720ctggcgctgt tgctggagtc
ctgccagtga ttccccacca cagcctgacc atgggctgcc 177780ttggctcagg
gttccactgg cgagctggtg gtccttggac cccagcactc aggtgtagcg
177840ttgaccagtt ccaaggttgt cccagtgcct gcccatctct cctgagggct
cagggacagt 177900acctggcagt tgggggtgtg gcagggggca ggaatgacca
gcctctggga gggtggggca 177960gaagcctgta cagtgaggag gagctggctc
agcctggctg cctatcgtga gaggggagcc 178020cacggggctg tgggaggggg
gccgtggtgc ctgtgagcag ggtgaggagc agcggcagga 178080ggatgaaggt
ggaacccaca catgcatctt tgagacccgt gtggtcagtg gcttctgccc
178140cccaccaccc cccactgctg tgcgtgcata gaattggctt ccctcacctg
ctctggaagt 178200gggttaggag cttggtaggg ctttttctca aggacaaggg
cccctgattt gctctcaggc 178260ctcagtcctg gcgacatggt ggatctggag
ccttgttgca ctgccttgcc tgtgctctcc 178320aatcagggtg gccagtgggg
agccatttgg cttttctcaa gagcatactc aggtggacct 178380tgctccactg
tttgaccaga tgaggcattc tgaacagcca agcctgtgct ggtctgtttt
178440catgttgatt tttttttttc ttttcttttt gagatggagt ttttcccttg
tcacccaggc 178500tggagtgcaa tggtgtgatc tcggctcact gcaacctccg
cctcccgggt tcaagtgatt 178560ctcctgcctc agcctcccta gtagctggga
ttacaggcac acaccaccat gcccagctaa 178620tttttgtgtt tttagtagag
acggggtttc accgtgttgg ctgggctggt ctcgaactcc 178680tgaactcaag
tgatccaccc tccttggcct cccaaagtgc tgggattgca ggcgtgagcc
178740actgcgcccg gcccccatgt cgatttttaa atgcacctct gcatcgttct
tcagtcccca 178800tatgctcact gagcaccact gcgactggca gacgggcaca
gggaggcgcc acgaccagtc 178860ctggccttca aggggcttgt ggtctagtgg
gcccaatgct aggtggcgag tgctccaaag 178920agtgtggtgc acgccttccg
cttgaccgct ctccagacgc cacagggagg cacctcgcag 178980ctgaccacag
atttctctct gtggagcagt gtcttcagag cggctgccat gccactgctg
179040ggcgagggtc tgcgggcggg tagagccagg agcacctgtg aggaagtgca
ctgccatttt 179100cgtagctgct tcccgtgtgt ctcagttaca cacggctggc
atgtgtgcac tgatgagacg 179160ggaacgtgat ggttgctttt cagcactgaa
agggatactg ctcagggggc gtgtttcagg 179220atctggttag ggaagaagca
gcgagagcac agatggggcc ctgtgtggta acaagaaaaa 179280agtcctggtt
gacaacagtg ccacgaagcg ttagaacaca tagggatgtt tgtggagcat
179340ttgcatgtgg aaagcagcaa aaacataatg ggaacgggtt cttttgttat
gatttttaaa 179400aatctctttt gtaacatcct tcccgctgcg ccgtttctgc
atattccttt atgtagcttt 179460caaactcctc ttaggagttc tggtccctac
agggcgtggg agcccaggct ttacgtagct 179520ttcaaactcc tcttaggagt
tctggtccct acagggtgtg ggagcccagg gcctgtgccg 179580agcagcctgc
ctccacgagc tagacagagg aagggctggg gttttgcctt tttagtctca
179640aaattcgtac tccagttgct taggctctga ctttccccac ttggaaagtc
cctcacggcc 179700gagggtccct cccagccctg atttcacatc ggcattttcc
ccagtattag agccaaggcc 179760ctccgcgggc aggtggggca gctgtgggag
ctggtgccag tctctgacct gcgtccctcc 179820tcccaggatc aggaaaggct
ttccttgtga agccagagtg gtggccagga tcctgcccca 179880gtttctagac
gacttcttcc caccccagga catcatgaac aaagtcatcg gagagtttct
179940gtccaaccag cagccatacc cccagttcat ggccaccgtg gtgtataagg
tgaggttgca 180000tgtgggatgg ggatggagtg ggaaagcctg gaggtggagt
tgcctccgac ttcccagcag 180060attcgccagc agagcccagc tcctccgctt
taaagcagca atgcctctgg cccccacccc 180120acccccgcca cccaggcgca
gcaggtgctt cccgtccccc cagccctgac actcaggcac 180180ctgcttgctc
cttgcaggtg tttcagactc tgcacagcac cgggcagtcg tccatggtcc
180240gggactgggt catgctgtcc ctctccaact tcacgcagag ggccccggtc
gccatggcca 180300cgtggagcct ctcctgcttc tttgtcagcg cgtccaccag
cccgtgggtc gcggcgatgt 180360atcctctctg ggtccctggt gctggccccg
tttcccttgt caacaccgag gctcatgttt 180420catgataagg ttttgaaacc
taacctttgc aaaaacccca cagatgccag ggtgacaggc 180480cctcagcccc
agggaagtaa aatgctgaca ggggtacaga aaggagcacg tccagacatt
180540tgctgaccag ggcctctcag aggggccggt gtatggcagg agggtcgcag
ctgaggggcc 180600tttctgtgga gggcctgggt gaggggagcg agggtgggcg
gtggtctctg cagacgtccc 180660gcccactcgc gggctctgtg tggctgggct
tctcctgaca
ctgcttctca ttagctttgg 180720tcattgtgcc tcgatcgccc tctcggggaa
aggcttaagt aaagatccag ttcccacccc 180780cagatgctgg ctgccaggag
tttccctttc cacagccctt ccccaagaca gaccacaaga 180840gcctccaagc
agcacagttg tcctggtgct gacagcacag ccttgcccgg cgtgcctggc
180900acggctctgc cctcactgca ttggagcagg gctagtggag gccagcggaa
gcaccggcca 180960ccagcgctgc acaggagcca ggccaggtga gtgctgccga
gtgggtgccc tgcctgcagg 181020gcatccagcc agccaagggt tgcaggaatg
gaggtggagg cgctgatgca gctggaggca 181080tccaggtggc ccttccgggg
ctctgctcgc tctccaggct ccctggaccc ctttgtagac 181140tgtttcagga
gaggaactcc caggtgagga cagggaggca gcattcccct catttgccgg
181200cctttttcct taactcctgc accagcctcc cacatgtcat cagcaggatg
ggcaagctgg 181260agcaggtgga cgtgaacctt ttctgcctgg tcgccacaga
cttctacaga caccagatag 181320aggaggagct cgaccgcagg gccttccagt
ctgtgcttga ggtggttgca gccccaggaa 181380gcccatatca ccggctgctg
acttgtttac gaaatgtcca caaggtcacc acctgctgag 181440cgccatggtg
ggagagactg tgaggcggca gctggggccg gagcctttgg aagtctgcgc
181500ccttgtgccc tgcctccacc gagccagctt ggtccctatg ggcttccgca
catgccgcgg 181560gcggccaggc aacgtgcgtg tctctgccat gtggcagaag
tgctctttgt ggcagtggcc 181620aggcagggag tgtctgcagt cctggtgggg
ctgagcctga ggccttccag aaagcaggag 181680cagctgtgct gcaccccatg
tgggtgacca ggtcctttct cctgatagtc acctgctggt 181740tgttgccagg
ttgcagctgc tcttgcatct gggccagaag tcctccctcc tgcaggctgg
181800ctgttggccc ctctgctgtc ctgcagtaga aggtgccgtg agcaggcttt
gggaacactg 181860gcctgggtct ccctggtggg gtgtgcatgc cacgccccgt
gtctggatgc acagatgcca 181920tggcctgtgc tgggccagtg gctgggggtg
ctagacaccc ggcaccattc tcccttctct 181980cttttcttct caggatttaa
aatttaatta tatcagtaaa gagattaatt ttaacgtaac 182040tctttctatg
cccgtgtaaa gtatgtgaat cgcaaggcct gtgctgcatg cgacagcgtc
182100cggggtggtg gacagggccc ccggccacgc tccctctcct gtagccactg
gcatagccct 182160cctgagcacc cgctgacatt tccgttgtac atgttcctgt
ttatgcattc acaaggtgac 182220tgggatgtag agaggcgtta gtgggcaggt
ggccacagca ggactgagga caggccccca 182280ttatcctagg ggtgcgctca
cctgcagccc ctcctcctcg ggcacagacg actgtcgttc 182340tccacccacc
agtcagggac agcagcctcc ctgtcactca gctgagaagg ccagccctcc
182400ctggctgtga gcagcctcca ctgtgtccag agacatgggc ctcccactcc
tgttccttgc 182460tagccctggg gtggcgtctg cctaggagct ggctggcagg
tgttgggacc tgctgctcca 182520tggatgcatg ccctaagagt gtcactgagc
tgtgttttgt ctgagcctct ctcggtcaac 182580agcaaagctt ggtgtcttgg
cactgttagt gacagagccc agcatccctt ctgcccccgt 182640tccagctgac
atcttgcacg gtgacccctt ttagtcagga gagtgcagat ctgtgctcat
182700cggagactgc cccacggccc tgtcagagcc gccactccta tccccaggcc
aggtccctgg 182760accagcctcc tgtttgcagg cccagaggag ccaagtcatt
aaaatggaag tggattctgg 182820atggccgggc tgctgctgat gtaggagctg
gatttgggag ctctgcttgc cgactggctg 182880tgagacgagg caggggctct
gcttcctcag ccctagaggc gagccaggca aggttggcga 182940ctgtcatgtg
gcttggtttg gtcatgcccg tcgatgtttt gggtattgaa tgtggtaagt
183000ggaggaaatg ttggaactct gtgcaggtgc tgccttgaga cccccaagct
tccacctgtc 183060cctctcctat gtggcagctg gggagcagct gagatgtgga
cttgtatgct gcccacatac 183120gtgaggggga gctgaaaggg agcccctcct
ctgagcagcc tctgccaggc ctgtatgagg 183180cttttcccac cagctcccaa
cagaggcctc ccccagccag gaccacctcg tcctcgtggc 183240ggggcagcag
gagcggtaga aaggggtccg atgtttgagg aggcccttaa gggaagctac
183300tgaattataa cacgtaagaa aatcaccatt ccgtattggt tgggggctcc
tgtttctcat 183360cctagctttt tcctggaaag cccgctagaa ggtttgggaa
cgaggggaaa gttctcagaa 183420ctgttggctg ctccccaccc gcctcccgcc
tcccccgcag gttatgtcag cagctctgag 183480acagcagtat cacaggccag
atgttgttcc tggctagatg tttacatttg taagaaataa 183540cactgtgaat
gtaaaacaga gccattccct tggaatgcat atcgctgggc tcaacataga
183600gtttgtcttc ctcttgttta cgacgtgatc taaaccagtc cttagcaagg
ggctcagaac 183660accccgctct ggcagtaggt gtcccccacc cccaaagacc
tgcctgtgtg ctccggagat 183720gaatatgagc tcattagtaa aaatgacttc
acccacgcat atacataaag tatccatgca 183780tgtgcatata gacacatcta
taattttaca cacacacctc tcaagacgga gatgcatggc 183840ctctaagagt
gcccgtgtcg gttcttcctg gaagttgact ttccttagac ccgccaggtc
183900aagttagccg cgtgacggac atccaggcgt gggacgtggt cagggcaggg
ctcattcatt 183960gcccactagg atcccactgg cgaagatggt ctccatatca
gctctctgca gaagggagga 184020agactttatc atgttcctaa aaatctgtgg
caagcaccca tcgtattatc caaattttgt 184080tgcaaatgtg attaatttgg
ttgtcaagtt ttgggggtgg gctgtgggga gattgctttt 184140gttttcctgc
tggtaatatc gggaaagatt ttaatgaaac cagggtagaa ttgtttggca
184200atgcactgaa gcgtgtttct ttcccaaaat gtgcctccct tccgctgcgg
gcccagctga 184260gtctatgtag gtgatgtttc cagctgccaa gtgctctttg
ttactgtcca ccctcatttc 184320tgccagcgca tgtgtccttt caaggggaaa
atgtgaagct gaaccccctc cagacaccca 184380gaatgtagca tctgagaagg
ccctgtgccc taaaggacac ccctcgcccc catcttcatg 184440gagggggtca
tttcagagcc ctcggagcca atgaacagct cctcctcttg gagctgagat
184500gagccccacg tggagctcgg gacggatagt agacagcaat aactcggtgt
gtggccgcct 184560ggcaggtgga acttcctccc gttgcggggt ggagtgaggt
tagttctgtg tgtctggtgg 184620gtggagtcag gcttctcttg ctacctgtga
gcatccttcc cagcagacat cctcatcggg 184680ctttgtccct cccccgcttc
ctccctctgc ggggaggacc cgggaccaca gctgctggcc 184740agggtagact
tggagctgtc ctccagaggg gtcacgtgta ggagtgagaa gaaggaagat
184800cttgagagct gctgagggac cttggagagc tcaggatggc tcagacgagg
acactcgctt 184860gccgggcctg ggcctcctgg gaaggaggga gctgctcaga
atgccgcatg acaactgaag 184920gcaacctgga aggttcaggg gccgctcttc
ccccatgtgc ctgtcacgct ctggtgcagt 184980caaaggaacg ccttcccctc
agttgtttct aagagcagag tctcccgctg caatctgggt 185040ggtaactgcc
agccttggag gatcgtggcc aacgtggacc tgcctacgga gggtgggctc
185100tgacccaagt ggggcctcct tgtccaggtc tcactgcttt gcaccgtggt
cagagggact 185160gtcagctgag cttgagctcc cctggagcca gcagggctgt
gatgggcgag tcccggagcc 185220ccacccagac ctgaatgctt ctgagagcaa
agggaaggac tgacgagaga tgtatattta 185280attttttaac tgctgcaaac
attgtacatc caaattaaag gaaaaaaatg gaaaccatca 185340gttgttgctg
tgtgaggctt gctttgcttc atgagaacct agaccttgct gagctggagt
185400cttaggaagc agtctcctaa gtgcttctcc agcaggggca gaaactgtcc
caccagctaa 185460catctggcat tatggagggt cccccaggca gctgccagca
gggacaggcc ccgtgttttc 185520tgtagccagg gatgaggaag tggccccagg
gcatgggcct ggctgggtgc ttctgcaagg 185580gccttcccaa accacagtac
aggtggtctt cctgccctgc agatgggagc tgtgggagct 185640gctggagctg
ctggagcctt catggtcaag tgacatcata agcttatatg acatacacaa
185700gcctcaggac ttggcccatg gcactgaagc aggtcatcag gcccagcaca
gagactagag 185760ctgtgttctc acagggccca ccacccttcc acctccttgg
ccattgacac ctgcgtccct 185820ggcccagctg ctcccaggta acccccaaag
cagctggcac atcccacctc tggtgtggcc 185880ggggctgctg tgtgtccgca
gggcctgccc cgtctattct agcttgtttg tcctgtctga 185940accagcgcct
actccaagaa gcctctgctc agcccagcgg ggatgcttct aagctccgga
186000cgagcctctc ggaagccttg gtgattggtg gtgtagtcat cttgggatgc
agatgtctta 186060ccaacctgca agaacaaaaa ccctgtggct tcctctggtg
cagggtattt agtcaatgtt 186120tgctgaggtc ccgtctggtt ctggctaatt
ggcaggggtc gtccacccat tctttccctg 186180ctctgctgtc tgtgccagga
gagacggggg ccagtcggcc aaggggccag ctcctgctgc 186240ctgctcctct
tgggcacgtg cgggggcccc ctttctctga gcagggatag ggatcagtct
186300gccggaggga tgtggtggac aggcctaaag catttggggc ggggcatgcc
acttgagctc 186360cctaaatctg tctcctcata ggtgacaccg ctccagggcc
ccccagtggc ctctcctttc 186420agagctacct aaattctggt cacttcagag
aaatggagca cccccttctc cctggtccag 186480gtgtggacag cctggcacac
tgagcacacc tggcatggct ggtaatttca gaaagaagag 186540gggccggggt
ccagtgggaa gcagcggtga acccctcgtg agtgggcttt gcagtccctc
186600cccatgccac ggcagagctg ccctcaacac agccttcctc ttcctcatcg
gagagcacac 186660cctgtcccct tgccgagctg tgccctgtgc cttcggtggt
atttgatttt ggctgctact 186720ggctttgttg ggatctggaa gtcgcttccc
ctgcgtggtg cgtggagcac tgtaagtcag 186780atgagggaag tagccagggt
gaggtgagta ccgggtggag ccgccactga agggactggg 186840taggggggcc
ttgcctctac atgatgtgac acagccaacc gaggacagag gaagccccgt
186900tcctgggggt gtggggtgca cccctcaggg aagcctgcag tggggcctga
ggaaaggcat 186960cctccgcgag cccacgagtc tggtccatga gcaccgtgac
agtgtctgtg ggtagaggtg 187020gacccggcct tgtgtcatca ccaggacctc
ttttgggaaa ccatgtggac atcgcttgcg 187080ggtcccccag gctctgcagc
cccagcagcc tggctgcctt ttgggcaagt ggcttgagcc 187140acagaggacc
cagtcctgtt gcagccacat cctctggggg ggcccgccag tgtggccggc
187200tttctccacc ctacaccagg cctccaggtg tcctggtcgg gggtgtctgg
gccctgggtg 187260ggccctgtgg acctgtgagg tcagggtcag ggcatcactg
gaggcagagg gctgaagttg 187320tgggtctggg ttccccttgt gtgcacaggc
ccctgccctc catgcttggt caggcagcta 187380cccccaaaac tgctaggaca
ggctggtcct gaggtggatc ctggcccctg taccctctgg 187440acagcccacc
cgcccaacct tctaccctgc cccagcggcg gcagtgttgg ccacatcctt
187500cccctcctgg ccccaattgc tctggggaag tccaggctcc ggagcctgcc
caggggcccc 187560ccgtgatttg ggcccaggac tccacgtggt tctctgcctt
cacccaagcc ctgaactcct 187620cagctgccaa atccccaccc atctgcacag
gctgtgctca ccactgctgc tcctggaagg 187680tgcccctcag tgggacgccc
acctcctctc tgggcttctg tgtttgggag ccctgctgcc 187740cccacccttg
gtcagtcccc atgtcctgct ggcctgtcag gcagggcaga aaatccaccc
187800agaaatgctg agcaggatga gagtctagtt gggcccagcc tcattattta
gaagggatgg 187860aggcctaggg agcatgcttc tagcctgagc ccagcagggc
cccgcccatg tcccaggtct 187920gcaccaggga cagctcctgc cgaggcctga
cctgcccctt ctccctcagg tgctgctggt 187980tgaccagcct ctggccctag
gagaccccgt agcgactgag ggtcccagca ggccatgcag 188040ctttgccaag
gtacgagccc ctccccagca ggggacagat gtggggaccc tcccaggcag
188100gagcagctgg gtgcctggtg ctgccatctg ctgcctgcct ggttcttgtc
ctcacattgg 188160aggtcagtgt gagggctctg cctcgggaaa ggccatggag
cttgccctgt ccagggcctc 188220ccatgtgcac tgagcctggg aagagagggt
tggagttgag ccttttaccc tgggaatgct 188280gcctggagga tggtgcgggt
gtggggtggc accctgccag gcagggccct gcctccctgc 188340gcccactgga
actcgggcag gcaggggtgt aggtgcctcc tctagagccg tccggtgggg
188400gcccccggca gtggtggtgg tgtccactgg ccagcagctg ccccttcagc
caggacagta 188460ggcctgacgc tgtccccagc agctccaagg tggatttgtg
gaagggggta gagggcacgt 188520agaggcccca tgacctcccc agggttctgg
gagggctgtg cccccttagc cagcaccatg 188580ctgggtgata tagtcagatc
ctgttacccc tgttgtggag gtgaggaaac aggttagtgg 188640ggaggacatg
actaaggtcc atgctgagtc gctagagctg cacccagaac cactgctggg
188700accccatgcc tttctgctta ccccttgtgc cgggagatgc caagagatgc
tgggagccag 188760ccccacctct gcccttggag tcatggctac ggaaagggca
ttcggaccgg tccctgacct 188820caccggggag ggccgaaccc tgttcctgag
gagccagggc ttcctagagg aggtaggcct 188880tctagtcact ccttcatctg
caggcactcc acagagctct ctgtgccagc ccccagcacg 188940gagggctgac
cttagtcgag tggagatgcc ccagtgccag gcagtaggga tgatgtctcc
189000tgaggcccag atggaaggga ctggactagt ctcatggggc tgatggtggg
gccaggcctt 189060gaccagggac ccagtgtagg gggtgcagag acccctctga
gttcctcaca catccctggg 189120gccctcccca tacacttcct atcctgactg
cgggcaagag ggagccccag ttcgccttcc 189180ctatgctggg cacccacagt
ggggctgggc acccccgcca tgcccctgcc ctgtccttcc 189240cctgagagcc
tcggtcccac ctccaaggtg cctcagagga cagcaggggc agcgggcaga
189300ggccgagatg cctcctcatt ccaggctcag ctgcccttct tggggcagcc
cacacctgag 189360agtctcctgc agttggtcag gcctgaggag ggcagggggg
tgcctgctgt ccctctgctg 189420accacagtgg catttagcct gggcaccgcg
cccagcacag tccatgctgc acaggtgccg 189480tgggctccac agagccctgc
ctgacatgca tgtgttacgt ttcgggtgcc gatgcccttg 189540ggcggcactt
ctccgggcag aacccccagg ccaccgctcc ggttccggtt ccgctgcatc
189600tggggctctc ggcaggctgt ggtcctccgg ccagcctggg ggcatctcag
tccctcagcc 189660ccacaggggc ctgccccgca gcctgggcct cgagccccgt
ctccgcacgc tgtgccgaat 189720ctggctgccc atcagctccc tgcgtaccca
gactgtgccc tgccatgccc gtggctcttc 189780ccaggagtgc cctgtggcct
ccccctggct tgctgggctg attccctcct gtgtctcaaa 189840cagagctcac
ctttgccatc actgctgtcc tcaccggccg gtgccagagg cccgtgtctg
189900tgtaccctgt gtctgcacct ctgggcaggg cctggctctg accaacccgg
gcttccagtg 189960tccacagacc taaggcccag ggcgcctggg ggctggagca
agagaagcaa aaggagccaa 190020gggtgggggt ttggggttct tgtgagggcc
cagccccagg accccaggac caggacaccc 190080aggagcccca gggcccagcc
ccagttcaga aggcaggggc cttctgaggg agcttaaggg 190140tcccacagcc
caggaccccc accagggcca gtggccagcg ttgggggact cagcctcctc
190200gtcgctcgtc ctctctgttt ctcccacctt ttgccccctt tctccttgcc
tgttcccacc 190260cgaggccccc tcttggcctg cgtgagccgg ggcggcactg
aactgggggc cgatccgcct 190320gggcggcggt gagaggcagg gccgggagcc
gggccgctgg gtttgggcct ggcccgctcg 190380ccgcaatatt gatggcccgt
cagtgcagcc ctgattcctg tgctttcagt taaaaggttt 190440ctgttgttgt
agcttatgca gttgctctgt tgctatggaa acgtgacatc aaaatgacgt
190500ttcccgttta aaagctttta actaaattcc tgcctgtcag atgtaggccc
cattttgagc 190560gtggagctgc cttcgagcga gcgtgagcgg cgcctcccgc
ccatggtgcg tggggccggg 190620ccggggccct cgctgagcgc gctctctcac
cccacaggcg cctccggcat ggcggcggcc 190680gaggggcccg gctacctcgt
gtctccccag gcggagaagc accggcgggc ccgcaactgg 190740acggacgccg
agatgcgcgg cctcatgctg gtctgggagg agttcttcga cgagctcaag
190800cagaccaagc gcaacgccaa ggtgtacgag aagatggcca gcaagctctt
cgagatgacc 190860ggcgagcgca ggctgggcga ggagatcaag atcaagatca
ccaacatgac cttccagtac 190920aggtgggcga gcgggcagtg tgggccccac
caggacgggc gggcccgggc gtggcgggcc 190980gctcctgact ttcttggagc
tctgagtcgg gacgatgtgt gggtcgtggc ctgcctgtcg 191040gtctcctctg
gccgggtatg ggcagaaccc cacggggtga gacggggccc acggaaaccg
191100tgtgtgcagc cttccattgg ggaagtgggg aaactgaggc ccagcaaggg
caggaaacca 191160gtctaagagc tgaggggtag caggggtggg gctggtgctg
ggcagaggcc aggatggctc 191220ccaggacgta tgggcggtct gggcactgtc
cctcggaggc agcaacactc atggtggtgc 191280ccactgacct cacaccctgc
tcccccatag ggaggcggcg gctgccagtg ccctccccac 191340caccaagctc
ccaagctcag caggggtttc aggggcctac tgcgtcattg gggaaattga
191400gactgcaagt gagaaggagg ctcagtgctc tgcgacttgg agcatccact
gagcctctgc 191460catgagccgg tgagccccac tggggctggc cctagggtca
cggtggggta tttccagaaa 191520tcaccaggtg aggtgcagga ccagccagcg
catgggtggg gcttacggtg cgaagaagaa 191580agaggtggag gcctgccctg
gcccaggact cccagcgtgg gggctcccgg cctggcccca 191640cctctgctcc
tgctacatgg caggtgggcc cttcctgccc tggcaacctg cagggaaggc
191700cggaggggac cacccagcca gggagatgtt ggcgtctagg aggggacagg
tgtggtccca 191760cacacccagc atcttaaagt gcgtgggtcc ccagcccatt
aggacagggt cccgggtggg 191820caggggtcat ggtggggtga aggtctcagg
cacaggcaag gtcacaggtg cggtgagggt 191880cttgcagggt gtgaaggtca
taggtgtgcg gtgaaggtca caggtgtggg gtgatggttt 191940tgggtgtggg
gagggtcttg cacggagcga gggtggcagc aagagctgga agctgcaggg
192000ggagaatggc agcagagagc acccggccct gtgggcggcc tggacagggc
tgggcctggg 192060gctgccggag agcctgtcag cttccaggat gggagtggcc
tcactcagct gctccacctc 192120cgggtcaggc aggtgagcct ggggcagaga
ggctgagagc acctgagcca cttgtgggag 192180aggccacccc cactgccccc
ctcaggcgag gagccggcct ccagcacagc agaagggaac 192240ccccagtccc
cagccctagt gggagtgggg aagaggccca gcaaggcccc ggacagaccg
192300ccagcctgtg aggtctccgc tttcagttgc gttgatttga ttttttctga
gccttgaagg 192360aggggtccgg ggcctggccc tgcccaaagg cccctaggca
ggccccaaag ccgggaccta 192420gggtgctgag catgacggat gttgggtttg
agcggctggc ttgcgacgtg agggctgagg 192480tgtgagcctg ggtatcttca
gaggttcggt ggacacaggc agctgcccgc ggccccactg 192540ttcccgtggc
ctcctagtcc tgctcaggca cctggtgagg aagggacgca gagggcagtg
192600ggaggtggcc acgactgttc cagcaggctc ccctctgact caggaattca
cgggcaccac 192660ctccctggct ggctctggtt ggtgtctggc caggttattc
attatttatg ctgaaagcct 192720cttcagagtc ccaggggagg gtttctgtct
ccattcctgg aggctgagag atgagggtgc 192780agcagagtgg gggcctccac
tccagaccct gcagtctggg ctggccaagg gctgcaccgg 192840tgcactgcac
gtcatggctg atgaagcact tccacaccgc agcccctcag agctgccaca
192900gtcagcctta gttcaccgag ggggaagctg aggcccagag catgagaggg
acttgcccag 192960ggccacatag tccttagcag aggaagctgt ggctgggtga
ctcgatcttt gtcctttttc 193020tttatacccg cagtctcccc atagcagagg
cttttctttt ttttttcttt ttcttttttt 193080tttttttaca agaactcttt
atatattaag gctgttgggc tgaagaagcc tgagagggtg 193140gctggttctg
tggagcatgg tttgttgaag tacagtttgg gggcctccta cactgagaat
193200aggccttttc tcgtttctcc aaagagtggg ctggctcaag tagggcagag
agagaagcct 193260ggggcagagg ttagggatgg gcacccagcg cctgccctca
cacgctctgt gctggtgtct 193320tcacagccac gtgccaccct gggcagcatc
ccctgctcac catctggctg tgcctgtttg 193380ctgggggcac ctcattcaga
atccagctta ttgtttccaa cggccaatgg ccacaccctg 193440gcaggtagca
agagtaggag agaggagaca cccactccga gcacaggttg ggtttggagc
193500ccggccttgg ggcactctgt cactcaaagg cagagtgggg agtgggcact
gggccttagg 193560aggtactggg tccagtgagg cagagatgcc cctgccccac
ccccaccttg tggcttcttc 193620cctggcctgg ccagagctgt ctggccgcca
tggggccctg tgtctcctgc cttgacctcc 193680cagagggcag ccgaggccca
ggggaggcct ggggacttag cctctcaggg caggacctgt 193740ctgcaggagt
aggtgggtgc tgggggtccc agtggtaatg aggcatcagg cagtgtggga
193800aggggcccat ccggcccacc ccagggcctc tgggcaggtt gcaggttgta
gcgctggatc 193860taggctcctg cccagactgt aggttcaacc aagaatggca
tgggagccca gcctgctgtt 193920tgctttatta aatctgccct gtagctgggg
gaggggctta ctttgatcat cactatgtca 193980ttgatataaa aatagaggct
cagagaggtg aatgaacctg cccaaagtca cacagcaaag 194040tgtggagatg
agatactgac tcagggctgt ggacactgaa gcctgtgctc taacgccagt
194100ggctgtcgct ccctgaggca ttctctcccg aacaacacag ttattatatt
acaaaatatt 194160atcactatat ttatatatct tataatacct tattattaca
ataaaacctt attactctac 194220ctttcaaaat gaattattta aaaagcagta
tttgctcatt gcagagagtc tagaaactat 194280agaaaagcaa gggaaaagca
ataggaccag ccccaaggtc ccagcatgca cagataacct 194340tagtaatact
gggacgtgtg cttccttttt aacatctgag cccgtgtagg tcctgaagcc
194400cagcttcttt ctaagtccat tgtcatcttg accctggagc ctggccgatt
ttgctgggga 194460ggcccttgcc agccgagagc ggctcctgcc tgtgccggcg
tggcgcgccc ctctgctgag 194520gctgggcagg acaggggctg ggccagctct
gtttctcacc cttggctctt gtgtctctcg 194580tttcaggaaa ttaaaatgca
tgacagatag cgagtccgcc ccgcccgact ggccctatta 194640cctagccatt
gatgggattc tggccaaggt ccccgagtcc tgtgatggca aactgccgga
194700cagccagccg ccggggccct ccacgtccca gaccgaggcg tccctgtcgc
cgcccgctaa 194760gtccacccct ctgtacttcc cgtataacca gtgctcctac
gaaggccgct tcgaggatga 194820tcgctccgac agctcctcca gcttactgtc
ccttaagttc aggtagtgtg tctgcttgtc 194880cttcccctgc cctggggtat
ctcagccccc accatttaga gaaagggact gggagtggca 194940aggccggcgg
cggcggccac agtggttgca gaggccgtgg ctgcgggcag cgcctccagg
195000gacaggcggc ctcagaccag ggagggcttt agtgtccaca ggcagaccga
gtttgtctcc 195060cagctccatc acttttgagc tgcacggaaa gttccttgac
ttctctggcc tcagtctccc 195120tcctataaaa tgggggtaaa tcagtacctt
tctcagaggg tggctgggag catcacagga 195180gagaagacgc agcatggggc
ccggcacacg gagggagacc aagccccaga ccccagaatg 195240cgccccctgg
cctcccttag cccacacaga ccccaccctc acaggctagc tgccctctca
195300gcactgggga gggtgtcggg ctgcacctca tcacgtgttg ccgtgggcat
gacccgtccc 195360ctctgccatc catcccacac ctcagacccg tcccgtgctg
gccacgtgac tgtgcctgca 195420agatgctcac agggcagccg ggagccaggc
agcatgcagg acagacacct gcggggtggg 195480cctggggagc ccagagaagg
tgcttttgag gaggggacat ttggggtggg ctttcaaggt 195540aaaatagaag
ttggccattt ggaggcaaga acaggaagat tgtggatttg agtcacagct
195600tctcccctgc cctggtcttc aagtctttct gacaggaggt gtcagaaaag
tatctttagt 195660agagaaggcg tctccgagga gggtccctct catgccgggg
gccgctgctt gactcaggat 195720ttctcattga agacctgaga caaaaacgct
tttgctggca
gctagaagga accagcagga 195780ggcctgagat ttgtggctgt tgttcccgtg
gactgagccc agttctcaga ctcagctgcc 195840tggggccttg cacaggactg
gggcgtgggg gctgccctcc ctgatcaggc ccaaagcgcg 195900gatctcacgc
ccctgaggtt ggctgtaccc tctcagctca gagcagagtg tgggccaggg
195960atgagcaggc actggagcag ggccctgggg tctgtgggtt ttggcagctc
cctgcccttc 196020agggaggtct gctgagacca cgggtggccc ctaccccagc
agcagagctc tcaggaggcg 196080cccacagggc tggactgcct ttactcacca
cctctaccag agctctgagg tcctggggag 196140agagcccagg cctcttgtgg
gccccacacc ctctaggtgc ctgtccttct gcctctctac 196200caaggtgtgc
cggccccatt tctaggccgc cgggagataa gggggctcac atctcaggcc
196260cttccttctg ggacctcagt ttccccatct gcctaaggcc gggtggggct
ggtggtcttg 196320gcttccctac aggggtcctg agtactctgc actacccagc
accccccacc cctgccttca 196380tctctccctg ggggtggtct ctccacccct
ggcccccaac tggggctgag cccccacctg 196440cccagtttgg tgggtgaagg
gtgctccctg gcaggatatg cccctctgca gcccagaaca 196500tcccaccctt
tccagaccga aggggtgtgg attgtcctgg gaccctggtc attggggtca
196560tccgctagtc gcaaaggacg gcaatgcctg tggcctctct ttctttcttt
ttcttttttt 196620ttttttttga gacggagtct cgctcttgtg cagagagcag
tggcgcgatc ttggctcact 196680gcaacctccg cctcgtgggt tcaagcgatt
ctcctgcctc agcctcccga gtagctggga 196740ttacaggcac ccgccacaac
gcctggctaa tttttgtatt tttagtagag atggggtttc 196800accatgttgg
ccaggctggt cttgaactcc tgacctcagg tgatccacct gcctctgcct
196860cccaaagtgc tgggattaca ggcataagcc tccacacccg gccacccctg
ttactttctg 196920tcaaaggcgg tgggttctgg cccctccttt gcacatggaa
tatgagaccc tgagtaagtg 196980acctgactcc ctggggcctc agtttcccca
tttgcccagt aggattgtcg ggagggtccg 197040gtgaggcccc tggtgtgccc
aggctctgtg gccagcacgt ccacagccgg cactgtcctt 197100ccaggtcgga
ggagcggccg gtgaagaagc gcaaggtgca gagctgccac ctgcagaaga
197160agcagctgcg gctgctggag gccatggtgg aggagcagcg ccggctgagc
cgcgccgtgg 197220aggagacctg ccgcgaggtg cgccgcgtgc tggaccagca
gcacatcctg caggtgcaga 197280gcctgcagct gcaggagcgc atgatgagtc
tgctggagag gatcatcacc aagtccagcg 197340tctaggccag caggcggcgg
cggcggcggg gccgggcggc tggtggtact gctcaggcca 197400cccagggcag
gccactcagg ccaggcgggc aagggggccg ccccgcgagc ggagaccgcc
197460ttccacctgg cctctggcag gatgtccctt ctgaggggta ttttgaggaa
cccccaggcc 197520ctggggaccg tgaggctcca gtctccagca tgaatgccct
tcctcggaca caggccaggg 197580cctctggggt tcactccgag taagaacgtc
ctagagccac tctccagtgt cgttactatc 197640aatgatactt gacgtggctt
tgatattaaa cgtatacttt ttcattcttg cctggaacgc 197700acagtttgct
gttgctggct tggtgaggat gccctgattg atggatcccg aaaatgaaag
197760cagatggaaa cgggttgggg caggctggag ctgggggagc tctctcctga
agggaaccct 197820gtgtcctccc tcaccaggac ctctgcgtct ctccttaaat
ggcctctgac gcctgatgaa 197880aaccccagcg accttccagg aggcttttat
tcagctctgt ttggagcatc aggtgtttcc 197940actgcctcct tagcaatgac
actaataaaa gtcgtaacac ctgttcacat gcacagccct 198000gttgagtgtt
ctgggtgctg gagatatcat ggtggatgac acaaaggccc tggcctcttg
198060gagcttatgc tcccatgcgg ggaagacaca tgggtcagta gagaaatggt
tgcaggttgt 198120gataagtgct ggaagggagg ggttggcctg aggacacgga
ggcagacata cgtggagctg 198180ggaacagtgg ccacacaggg aacggccagt
gcgaaggccc agaggcagag gacactggag 198240caagcccagg agcagctagg
aggctggtgg ccagcagcca ggccacggaa gcccgtgcag 198300cccgtgggga
ggagtgttca tgcttttcaa gcttagtggg agtcttttgg ccagtgcagc
198360tctgggtctg acatcggtgg gggacagagg ggtggtggag cggccacagc
tgcaagctca 198420cctcactgcc ggcccttcca ccagtttcaa actctttcta
gaagctccag ctttcccaaa 198480gctgaattct ctatgagcct ccttggccgg
gactcgggcg tctggttgcc ctggctgcaa 198540aggaggctgg ggccaggtgt
gtttgagtca cctcctggaa ttaggcaagt tgctgcccaa 198600atagaaggtt
gttggcaggt gggtcagcag gtgaacagca tggtttgact cagggttcag
198660aaaaatctcc ctctggctgc caagcgagca ggccgtggag acaggtgcag
aggcaggtgt 198720ggcagcaggc atcctgccag gcagtgctgc agtcatcctg
cgacaagcag cagcagctca 198780tcctaccctc tagggggtct tgaggtcagc
caggcaagag agcagcttgg actccactgg 198840gtgtgggacc agcctgtgga
ccatggtggt gtggagggtg ccctcggcct gcctgtgtga 198900aggagaggcc
ggcgtgttct gtggagccca aaggggagct gggcaagcag gattcacttc
198960actctgaggg tcctggagct cccaccctcc tcagccatct ccccagagcc
tgtgtgccga 199020ggactcggcc catgttgctg tgggatgaga ggcagagtgt
cgtgagggtg taaggagcgg 199080cggcagtggt gggaggaggg agcagcagcc
agcgctacgg tgccagtttc cagctgccag 199140atgacgccgc tgaccctgtg
gttgagaaga gatgcacaga gccagctctt gcaagccagt 199200gtggctgcca
tagcacctgc cgagaagcag aaggaagggt ggccccagga ggacagagga
199260tgcgggcaca tctgatgcgg gcctgagttt tgggagcttt tgctctagcc
agtttccagc 199320tccgggaccc acccgcctcg taggcaagac accacccaag
aaatcatttg cttaacaaac 199380acactgggct ccaactggac acctgtgcca
ccctagatgc tgggaaccca gccatgacac 199440aggcacctgc ccccagctgc
tgaccactga ggctggctag cagctcccat ggggccagtg 199500tggggttccc
cagcctccta acagggagcc agtcacaagc cctcgagagg gaagggtgcc
199560cgcggccctg gcaggaaggt taggctggac gctcccacaa gacataacag
atggaggttc 199620taaatgatgt agcaacttct tcaccctgaa actgctgtag
agtcagccat gacgcaccgg 199680tacttcagta actgccaggc atccgggaca
gcacaccgcg agtcgctgct gtgcttgggt 199740tagaagtggt ttggtctgtt
ttcttctcgc cctctctaat cagagtcagt gattcatgcc 199800cttccatcac
cttagagaag gggcaggcgc tgcccgacct tctccaggct ggagcagcat
199860cgcctcatgt cagcagaact cagctgtaga atatcgtggg gttggtgcct
ttcatcagca 199920gcatgtcctt aacaactttc tgatttcttc cttagttgtt
ggtccattaa ggagaaaaaa 199980aatgatctca gccattgcta aaatatttga
taagattcag caaagcagca tgttaacatt 200040gaaaactaga atcaggagcc
aggcagatgt gcttgctttt cacctgtagt atttcatgtt 200100gttttgacgt
ttttagctaa tgcattaaga taaataaaca aaagccgggc acggtggttc
200160acgcctgtaa tcccagcact ttgggaggct gaggcgggag gatcctctga
ggtcaggagt 200220tcaagaccag cctgaccaac atggagaaac ctcgtcatta
ctaaaaatac aaaattagct 200280gggcgtggtg gtgcatgcct gtaatcccag
ctacttggga ggctgaggca ggagaatcgc 200340ttgaacccgg gaggcggagg
ttgcagtgag ctgagattgc accactgcac tccagcctgg 200400gtgacagtga
aactcggtct caaaaaaaaa aaaaaattaa aaaaagataa ataaaataag
200460caggataaga aatgaagaaa gtagagttac ctttgttttc agatttcatt
tttgtatacc 200520cagaaagcca aatgtacaaa agactgggag ctctttaaac
cagcttaaac ttgttgaaaa 200580tgaggatgaa gaaatatccc attcagagtt
ggaatgaatt taacccagaa ggaacaggac 200640ctctactgaa gagaactatg
cagtcttact gaaaaatcta aataatacct gagcgctgga 200700gaaacttcgc
acactcctga aagctccaaa gtcaatgtca tcattttatt aatgtcattc
200760caaacatagt ctcaataata tcacttcttg gttttgacat ggacgcgatg
atgtttaaat 200820tcatatgaaa aaagaacggg gccaaaagtc caaggccagt
cagcgtgaga agaccgctcg 200880gcctccctcg gagtcgggga gttggaaccg
cagactgaga tcatgtggct gctggaggcc 200940aggacgaacg tcgggaaatg
gagactcctg cgttgctggt gggatgtggt gcagccgctt 201000ccaggagcaa
tttggtgtcc cgtcctaaag ctgaagaaac gcatttcctc tggtcagtgc
201060cactcctaga caggccaccc tgcggcagcc gtcctcaaac tggtctgagg
acccctcaac 201120gctcttaaaa atcattaaaa gtgggccagg tgcggtggct
cacacctgta atcccagcac 201180tttgggaggc caagacaggc ggatcacgag
gtcaggacat tgagatcatc ctggctaaca 201240cggtgaaacc ccgtctctac
taaaaataca aaaaattagc cgggcgtggt ggcgggcgcc 201300tgtagtccca
gctacttggg aggctgagcc aggagaatgg cgtgaaccca ggaggtggag
201360cttgcagtga gctgagatca ctccactgca ctccagcctg ggcagcagag
cgagactctg 201420tctcaaaaaa aaataataaa taaataaata aaaataaaat
aaaataaaat tcattaaaag 201480tgccaaagaa cttttgctta tgtgagttct
aatgaccaat attaatacac attagaatat 201540cttattagaa attaaacctg
agacctttag aaaacatgta ttcatttcaa aatagcaata 201600aacccatgac
atattaacat aaataacaat tgtatgaaaa atatattttc caaaacaaaa
201660agttttcggg agaagtgtgg catagtttta catggtcgta aatctctggc
ttaagagaag 201720cccactggcc tctcagcagg ctctgggtcc gtccactttg
ggggtgtttt ggttgtgaag 201780tataggagtg aatggagaag ctcattctta
cccagatgtg tatttgaaaa gaaaaggaac 201840attttaataa cctttgcaaa
taatcggtat attcttccgt gatcctattc caacactgga 201900caggtggtgg
tttgtttttt ttttttggag acggagtccc gctctgtcac tcaggctgga
201960gtgcagtggc gcgatttcag ctcactgcaa gctccgcctc c
202001213481DNAHomo sapiensCDS(146)..(9580) 2gctgccggga cgggtccaag
atggacggcc gctcaggttc tgcttttacc tgcggcccag 60agccccattc attgccccgg
tgctgagcgg cgccgcgagt cggcccgagg cctccgggga 120ctgccgtgcc
gggcgggaga ccgcc atg gcg acc ctg gaa aag ctg atg aag 172 Met Ala
Thr Leu Glu Lys Leu Met Lys 1 5 gcc ttc gag tcc ctc aag tcc ttc cag
cag cag cag cag cag cag cag 220Ala Phe Glu Ser Leu Lys Ser Phe Gln
Gln Gln Gln Gln Gln Gln Gln 10 15 20 25 cag cag cag cag cag cag cag
cag cag cag cag cag cag caa cag ccg 268Gln Gln Gln Gln Gln Gln Gln
Gln Gln Gln Gln Gln Gln Gln Gln Pro 30 35 40 cca ccg ccg ccg ccg
ccg ccg ccg cct cct cag ctt cct cag ccg ccg 316Pro Pro Pro Pro Pro
Pro Pro Pro Pro Pro Gln Leu Pro Gln Pro Pro 45 50 55 ccg cag gca
cag ccg ctg ctg cct cag ccg cag ccg ccc ccg ccg ccg 364Pro Gln Ala
Gln Pro Leu Leu Pro Gln Pro Gln Pro Pro Pro Pro Pro 60 65 70 ccc
ccg ccg cca ccc ggc ccg gct gtg gct gag gag ccg ctg cac cga 412Pro
Pro Pro Pro Pro Gly Pro Ala Val Ala Glu Glu Pro Leu His Arg 75 80
85 cca aag aaa gaa ctt tca gct acc aag aaa gac cgt gtg aat cat tgt
460Pro Lys Lys Glu Leu Ser Ala Thr Lys Lys Asp Arg Val Asn His Cys
90 95 100 105 ctg aca ata tgt gaa aac ata gtg gca cag tct gtc aga
aat tct cca 508Leu Thr Ile Cys Glu Asn Ile Val Ala Gln Ser Val Arg
Asn Ser Pro 110 115 120 gaa ttt cag aaa ctt ctg ggc atc gct atg gaa
ctt ttt ctg ctg tgc 556Glu Phe Gln Lys Leu Leu Gly Ile Ala Met Glu
Leu Phe Leu Leu Cys 125 130 135 agt gat gac gca gag tca gat gtc agg
atg gtg gct gac gaa tgc ctc 604Ser Asp Asp Ala Glu Ser Asp Val Arg
Met Val Ala Asp Glu Cys Leu 140 145 150 aac aaa gtt atc aaa gct ttg
atg gat tct aat ctt cca agg tta cag 652Asn Lys Val Ile Lys Ala Leu
Met Asp Ser Asn Leu Pro Arg Leu Gln 155 160 165 ctc gag ctc tat aag
gaa att aaa aag aat ggt gcc cct cgg agt ttg 700Leu Glu Leu Tyr Lys
Glu Ile Lys Lys Asn Gly Ala Pro Arg Ser Leu 170 175 180 185 cgt gct
gcc ctg tgg agg ttt gct gag ctg gct cac ctg gtt cgg cct 748Arg Ala
Ala Leu Trp Arg Phe Ala Glu Leu Ala His Leu Val Arg Pro 190 195 200
cag aaa tgc agg cct tac ctg gtg aac ctt ctg ccg tgc ctg act cga
796Gln Lys Cys Arg Pro Tyr Leu Val Asn Leu Leu Pro Cys Leu Thr Arg
205 210 215 aca agc aag aga ccc gaa gaa tca gtc cag gag acc ttg gct
gca gct 844Thr Ser Lys Arg Pro Glu Glu Ser Val Gln Glu Thr Leu Ala
Ala Ala 220 225 230 gtt ccc aaa att atg gct tct ttt ggc aat ttt gca
aat gac aat gaa 892Val Pro Lys Ile Met Ala Ser Phe Gly Asn Phe Ala
Asn Asp Asn Glu 235 240 245 att aag gtt ttg tta aag gcc ttc ata gcg
aac ctg aag tca agc tcc 940Ile Lys Val Leu Leu Lys Ala Phe Ile Ala
Asn Leu Lys Ser Ser Ser 250 255 260 265 ccc acc att cgg cgg aca gcg
gct gga tca gca gtg agc atc tgc cag 988Pro Thr Ile Arg Arg Thr Ala
Ala Gly Ser Ala Val Ser Ile Cys Gln 270 275 280 cac tca aga agg aca
caa tat ttc tat agt tgg cta cta aat gtg ctc 1036His Ser Arg Arg Thr
Gln Tyr Phe Tyr Ser Trp Leu Leu Asn Val Leu 285 290 295 tta ggc tta
ctc gtt cct gtc gag gat gaa cac tcc act ctg ctg att 1084Leu Gly Leu
Leu Val Pro Val Glu Asp Glu His Ser Thr Leu Leu Ile 300 305 310 ctt
ggc gtg ctg ctc acc ctg agg tat ttg gtg ccc ttg ctg cag cag 1132Leu
Gly Val Leu Leu Thr Leu Arg Tyr Leu Val Pro Leu Leu Gln Gln 315 320
325 cag gtc aag gac aca agc ctg aaa ggc agc ttc gga gtg aca agg aaa
1180Gln Val Lys Asp Thr Ser Leu Lys Gly Ser Phe Gly Val Thr Arg Lys
330 335 340 345 gaa atg gaa gtc tct cct tct gca gag cag ctt gtc cag
gtt tat gaa 1228Glu Met Glu Val Ser Pro Ser Ala Glu Gln Leu Val Gln
Val Tyr Glu 350 355 360 ctg acg tta cat cat aca cag cac caa gac cac
aat gtt gtg acc gga 1276Leu Thr Leu His His Thr Gln His Gln Asp His
Asn Val Val Thr Gly 365 370 375 gcc ctg gag ctg ttg cag cag ctc ttc
aga acg cct cca ccc gag ctt 1324Ala Leu Glu Leu Leu Gln Gln Leu Phe
Arg Thr Pro Pro Pro Glu Leu 380 385 390 ctg caa acc ctg acc gca gtc
ggg ggc att ggg cag ctc acc gct gct 1372Leu Gln Thr Leu Thr Ala Val
Gly Gly Ile Gly Gln Leu Thr Ala Ala 395 400 405 aag gag gag tct ggt
ggc cga agc cgt agt ggg agt att gtg gaa ctt 1420Lys Glu Glu Ser Gly
Gly Arg Ser Arg Ser Gly Ser Ile Val Glu Leu 410 415 420 425 ata gct
gga ggg ggt tcc tca tgc agc cct gtc ctt tca aga aaa caa 1468Ile Ala
Gly Gly Gly Ser Ser Cys Ser Pro Val Leu Ser Arg Lys Gln 430 435 440
aaa ggc aaa gtg ctc tta gga gaa gaa gaa gcc ttg gag gat gac tct
1516Lys Gly Lys Val Leu Leu Gly Glu Glu Glu Ala Leu Glu Asp Asp Ser
445 450 455 gaa tcg aga tcg gat gtc agc agc tct gcc tta aca gcc tca
gtg aag 1564Glu Ser Arg Ser Asp Val Ser Ser Ser Ala Leu Thr Ala Ser
Val Lys 460 465 470 gat gag atc agt gga gag ctg gct gct tct tca ggg
gtt tcc act cca 1612Asp Glu Ile Ser Gly Glu Leu Ala Ala Ser Ser Gly
Val Ser Thr Pro 475 480 485 ggg tca gca ggt cat gac atc atc aca gaa
cag cca cgg tca cag cac 1660Gly Ser Ala Gly His Asp Ile Ile Thr Glu
Gln Pro Arg Ser Gln His 490 495 500 505 aca ctg cag gcg gac tca gtg
gat ctg gcc agc tgt gac ttg aca agc 1708Thr Leu Gln Ala Asp Ser Val
Asp Leu Ala Ser Cys Asp Leu Thr Ser 510 515 520 tct gcc act gat ggg
gat gag gag gat atc ttg agc cac agc tcc agc 1756Ser Ala Thr Asp Gly
Asp Glu Glu Asp Ile Leu Ser His Ser Ser Ser 525 530 535 cag gtc agc
gcc gtc cca tct gac cct gcc atg gac ctg aat gat ggg 1804Gln Val Ser
Ala Val Pro Ser Asp Pro Ala Met Asp Leu Asn Asp Gly 540 545 550 acc
cag gcc tcg tcg ccc atc agc gac agc tcc cag acc acc acc gaa 1852Thr
Gln Ala Ser Ser Pro Ile Ser Asp Ser Ser Gln Thr Thr Thr Glu 555 560
565 ggg cct gat tca gct gtt acc cct tca gac agt tct gaa att gtg tta
1900Gly Pro Asp Ser Ala Val Thr Pro Ser Asp Ser Ser Glu Ile Val Leu
570 575 580 585 gac ggt acc gac aac cag tat ttg ggc ctg cag att gga
cag ccc cag 1948Asp Gly Thr Asp Asn Gln Tyr Leu Gly Leu Gln Ile Gly
Gln Pro Gln 590 595 600 gat gaa gat gag gaa gcc aca ggt att ctt cct
gat gaa gcc tcg gag 1996Asp Glu Asp Glu Glu Ala Thr Gly Ile Leu Pro
Asp Glu Ala Ser Glu 605 610 615 gcc ttc agg aac tct tcc atg gcc ctt
caa cag gca cat tta ttg aaa 2044Ala Phe Arg Asn Ser Ser Met Ala Leu
Gln Gln Ala His Leu Leu Lys 620 625 630 aac atg agt cac tgc agg cag
cct tct gac agc agt gtt gat aaa ttt 2092Asn Met Ser His Cys Arg Gln
Pro Ser Asp Ser Ser Val Asp Lys Phe 635 640 645 gtg ttg aga gat gaa
gct act gaa ccg ggt gat caa gaa aac aag cct 2140Val Leu Arg Asp Glu
Ala Thr Glu Pro Gly Asp Gln Glu Asn Lys Pro 650 655 660 665 tgc cgc
atc aaa ggt gac att gga cag tcc act gat gat gac tct gca 2188Cys Arg
Ile Lys Gly Asp Ile Gly Gln Ser Thr Asp Asp Asp Ser Ala 670 675 680
cct ctt gtc cat tgt gtc cgc ctt tta tct gct tcg ttt ttg cta aca
2236Pro Leu Val His Cys Val Arg Leu Leu Ser Ala Ser Phe Leu Leu Thr
685 690 695 ggg gga aaa aat gtg ctg gtt ccg gac agg gat gtg agg gtc
agc gtg 2284Gly Gly Lys Asn Val Leu Val Pro Asp Arg Asp Val Arg Val
Ser Val 700 705 710 aag gcc ctg gcc ctc agc tgt gtg gga gca gct gtg
gcc ctc cac ccg 2332Lys Ala Leu Ala Leu Ser Cys Val Gly Ala Ala Val
Ala Leu His Pro 715 720 725 gaa tct ttc ttc agc aaa ctc tat aaa gtt
cct ctt gac acc acg gaa 2380Glu Ser Phe Phe Ser Lys Leu Tyr Lys Val
Pro Leu Asp Thr Thr Glu 730 735 740 745 tac cct gag gaa cag tat gtc
tca gac atc ttg aac tac atc gat cat 2428Tyr Pro Glu Glu Gln Tyr Val
Ser Asp Ile Leu Asn Tyr Ile Asp His 750 755 760
gga gac cca cag gtt cga gga gcc act gcc att ctc tgt ggg acc ctc
2476Gly Asp Pro Gln Val Arg Gly Ala Thr Ala Ile Leu Cys Gly Thr Leu
765 770 775 atc tgc tcc atc ctc agc agg tcc cgc ttc cac gtg gga gat
tgg atg 2524Ile Cys Ser Ile Leu Ser Arg Ser Arg Phe His Val Gly Asp
Trp Met 780 785 790 ggc acc att aga acc ctc aca gga aat aca ttt tct
ttg gcg gat tgc 2572Gly Thr Ile Arg Thr Leu Thr Gly Asn Thr Phe Ser
Leu Ala Asp Cys 795 800 805 att cct ttg ctg cgg aaa aca ctg aag gat
gag tct tct gtt act tgc 2620Ile Pro Leu Leu Arg Lys Thr Leu Lys Asp
Glu Ser Ser Val Thr Cys 810 815 820 825 aag tta gct tgt aca gct gtg
agg aac tgt gtc atg agt ctc tgc agc 2668Lys Leu Ala Cys Thr Ala Val
Arg Asn Cys Val Met Ser Leu Cys Ser 830 835 840 agc agc tac agt gag
tta gga ctg cag ctg atc atc gat gtg ctg act 2716Ser Ser Tyr Ser Glu
Leu Gly Leu Gln Leu Ile Ile Asp Val Leu Thr 845 850 855 ctg agg aac
agt tcc tat tgg ctg gtg agg aca gag ctt ctg gaa acc 2764Leu Arg Asn
Ser Ser Tyr Trp Leu Val Arg Thr Glu Leu Leu Glu Thr 860 865 870 ctt
gca gag att gac ttc agg ctg gtg agc ttt ttg gag gca aaa gca 2812Leu
Ala Glu Ile Asp Phe Arg Leu Val Ser Phe Leu Glu Ala Lys Ala 875 880
885 gaa aac tta cac aga ggg gct cat cat tat aca ggg ctt tta aaa ctg
2860Glu Asn Leu His Arg Gly Ala His His Tyr Thr Gly Leu Leu Lys Leu
890 895 900 905 caa gaa cga gtg ctc aat aat gtt gtc atc cat ttg ctt
gga gat gaa 2908Gln Glu Arg Val Leu Asn Asn Val Val Ile His Leu Leu
Gly Asp Glu 910 915 920 gac ccc agg gtg cga cat gtt gcc gca gca tca
cta att agg ctt gtc 2956Asp Pro Arg Val Arg His Val Ala Ala Ala Ser
Leu Ile Arg Leu Val 925 930 935 cca aag ctg ttt tat aaa tgt gac caa
gga caa gct gat cca gta gtg 3004Pro Lys Leu Phe Tyr Lys Cys Asp Gln
Gly Gln Ala Asp Pro Val Val 940 945 950 gcc gtg gca aga gat caa agc
agt gtt tac ctg aaa ctt ctc atg cat 3052Ala Val Ala Arg Asp Gln Ser
Ser Val Tyr Leu Lys Leu Leu Met His 955 960 965 gag acg cag cct cca
tct cat ttc tcc gtc agc aca ata acc aga ata 3100Glu Thr Gln Pro Pro
Ser His Phe Ser Val Ser Thr Ile Thr Arg Ile 970 975 980 985 tat aga
ggc tat aac cta cta cca agc ata aca gac gtc act atg gaa 3148Tyr Arg
Gly Tyr Asn Leu Leu Pro Ser Ile Thr Asp Val Thr Met Glu 990 995
1000 aat aac ctt tca aga gtt att gca gca gtt tct cat gaa cta atc
3193Asn Asn Leu Ser Arg Val Ile Ala Ala Val Ser His Glu Leu Ile
1005 1010 1015 aca tca acc acc aga gca ctc aca ttt gga tgc tgt gaa
gct ttg 3238Thr Ser Thr Thr Arg Ala Leu Thr Phe Gly Cys Cys Glu Ala
Leu 1020 1025 1030 tgt ctt ctt tcc act gcc ttc cca gtt tgc att tgg
agt tta ggt 3283Cys Leu Leu Ser Thr Ala Phe Pro Val Cys Ile Trp Ser
Leu Gly 1035 1040 1045 tgg cac tgt gga gtg cct cca ctg agt gcc tca
gat gag tct agg 3328Trp His Cys Gly Val Pro Pro Leu Ser Ala Ser Asp
Glu Ser Arg 1050 1055 1060 aag agc tgt acc gtt ggg atg gcc aca atg
att ctg acc ctg ctc 3373Lys Ser Cys Thr Val Gly Met Ala Thr Met Ile
Leu Thr Leu Leu 1065 1070 1075 tcg tca gct tgg ttc cca ttg gat ctc
tca gcc cat caa gat gct 3418Ser Ser Ala Trp Phe Pro Leu Asp Leu Ser
Ala His Gln Asp Ala 1080 1085 1090 ttg att ttg gcc gga aac ttg ctt
gca gcc agt gct ccc aaa tct 3463Leu Ile Leu Ala Gly Asn Leu Leu Ala
Ala Ser Ala Pro Lys Ser 1095 1100 1105 ctg aga agt tca tgg gcc tct
gaa gaa gaa gcc aac cca gca gcc 3508Leu Arg Ser Ser Trp Ala Ser Glu
Glu Glu Ala Asn Pro Ala Ala 1110 1115 1120 acc aag caa gag gag gtc
tgg cca gcc ctg ggg gac cgg gcc ctg 3553Thr Lys Gln Glu Glu Val Trp
Pro Ala Leu Gly Asp Arg Ala Leu 1125 1130 1135 gtg ccc atg gtg gag
cag ctc ttc tct cac ctg ctg aag gtg att 3598Val Pro Met Val Glu Gln
Leu Phe Ser His Leu Leu Lys Val Ile 1140 1145 1150 aac att tgt gcc
cac gtc ctg gat gac gtg gct cct gga ccc gca 3643Asn Ile Cys Ala His
Val Leu Asp Asp Val Ala Pro Gly Pro Ala 1155 1160 1165 ata aag gca
gcc ttg cct tct cta aca aac ccc cct tct cta agt 3688Ile Lys Ala Ala
Leu Pro Ser Leu Thr Asn Pro Pro Ser Leu Ser 1170 1175 1180 ccc atc
cga cga aag ggg aag gag aaa gaa cca gga gaa caa gca 3733Pro Ile Arg
Arg Lys Gly Lys Glu Lys Glu Pro Gly Glu Gln Ala 1185 1190 1195 tct
gta ccg ttg agt ccc aag aaa ggc agt gag gcc agt gca gct 3778Ser Val
Pro Leu Ser Pro Lys Lys Gly Ser Glu Ala Ser Ala Ala 1200 1205 1210
tct aga caa tct gat acc tca ggt cct gtt aca aca agt aaa tcc 3823Ser
Arg Gln Ser Asp Thr Ser Gly Pro Val Thr Thr Ser Lys Ser 1215 1220
1225 tca tca ctg ggg agt ttc tat cat ctt cct tca tac ctc aaa ctg
3868Ser Ser Leu Gly Ser Phe Tyr His Leu Pro Ser Tyr Leu Lys Leu
1230 1235 1240 cat gat gtc ctg aaa gct aca cac gct aac tac aag gtc
acg ctg 3913His Asp Val Leu Lys Ala Thr His Ala Asn Tyr Lys Val Thr
Leu 1245 1250 1255 gat ctt cag aac agc acg gaa aag ttt gga ggg ttt
ctc cgc tca 3958Asp Leu Gln Asn Ser Thr Glu Lys Phe Gly Gly Phe Leu
Arg Ser 1260 1265 1270 gcc ttg gat gtt ctt tct cag ata cta gag ctg
gcc aca ctg cag 4003Ala Leu Asp Val Leu Ser Gln Ile Leu Glu Leu Ala
Thr Leu Gln 1275 1280 1285 gac att ggg aag tgt gtt gaa gag atc cta
gga tac ctg aaa tcc 4048Asp Ile Gly Lys Cys Val Glu Glu Ile Leu Gly
Tyr Leu Lys Ser 1290 1295 1300 tgc ttt agt cga gaa cca atg atg gca
act gtt tgt gtt caa caa 4093Cys Phe Ser Arg Glu Pro Met Met Ala Thr
Val Cys Val Gln Gln 1305 1310 1315 ttg ttg aag act ctc ttt ggc aca
aac ttg gcc tcc cag ttt gat 4138Leu Leu Lys Thr Leu Phe Gly Thr Asn
Leu Ala Ser Gln Phe Asp 1320 1325 1330 ggc tta tct tcc aac ccc agc
aag tca caa ggc cga gca cag cgc 4183Gly Leu Ser Ser Asn Pro Ser Lys
Ser Gln Gly Arg Ala Gln Arg 1335 1340 1345 ctt ggc tcc tcc agt gtg
agg cca ggc ttg tac cac tac tgc ttc 4228Leu Gly Ser Ser Ser Val Arg
Pro Gly Leu Tyr His Tyr Cys Phe 1350 1355 1360 atg gcc ccg tac acc
cac ttc acc cag gcc ctc gct gac gcc agc 4273Met Ala Pro Tyr Thr His
Phe Thr Gln Ala Leu Ala Asp Ala Ser 1365 1370 1375 ctg agg aac atg
gtg cag gcg gag cag gag aac gac acc tcg gga 4318Leu Arg Asn Met Val
Gln Ala Glu Gln Glu Asn Asp Thr Ser Gly 1380 1385 1390 tgg ttt gat
gtc ctc cag aaa gtg tct acc cag ttg aag aca aac 4363Trp Phe Asp Val
Leu Gln Lys Val Ser Thr Gln Leu Lys Thr Asn 1395 1400 1405 ctc acg
agt gtc aca aag aac cgt gca gat aag aat gct att cat 4408Leu Thr Ser
Val Thr Lys Asn Arg Ala Asp Lys Asn Ala Ile His 1410 1415 1420 aat
cac att cgt ttg ttt gaa cct ctt gtt ata aaa gct tta aaa 4453Asn His
Ile Arg Leu Phe Glu Pro Leu Val Ile Lys Ala Leu Lys 1425 1430 1435
cag tac acg act aca aca tgt gtg cag tta cag aag cag gtt tta 4498Gln
Tyr Thr Thr Thr Thr Cys Val Gln Leu Gln Lys Gln Val Leu 1440 1445
1450 gat ttg ctg gcg cag ctg gtt cag tta cgg gtt aat tac tgt ctt
4543Asp Leu Leu Ala Gln Leu Val Gln Leu Arg Val Asn Tyr Cys Leu
1455 1460 1465 ctg gat tca gat cag gtg ttt att ggc ttt gta ttg aaa
cag ttt 4588Leu Asp Ser Asp Gln Val Phe Ile Gly Phe Val Leu Lys Gln
Phe 1470 1475 1480 gaa tac att gaa gtg ggc cag ttc agg gaa tca gag
gca atc att 4633Glu Tyr Ile Glu Val Gly Gln Phe Arg Glu Ser Glu Ala
Ile Ile 1485 1490 1495 cca aac atc ttt ttc ttc ttg gta tta cta tct
tat gaa cgc tat 4678Pro Asn Ile Phe Phe Phe Leu Val Leu Leu Ser Tyr
Glu Arg Tyr 1500 1505 1510 cat tca aaa cag atc att gga att cct aaa
atc att cag ctc tgt 4723His Ser Lys Gln Ile Ile Gly Ile Pro Lys Ile
Ile Gln Leu Cys 1515 1520 1525 gat ggc atc atg gcc agt gga agg aag
gct gtg aca cat gcc ata 4768Asp Gly Ile Met Ala Ser Gly Arg Lys Ala
Val Thr His Ala Ile 1530 1535 1540 ccg gct ctg cag ccc ata gtc cac
gac ctc ttt gta tta aga gga 4813Pro Ala Leu Gln Pro Ile Val His Asp
Leu Phe Val Leu Arg Gly 1545 1550 1555 aca aat aaa gct gat gca gga
aaa gag ctt gaa acc caa aaa gag 4858Thr Asn Lys Ala Asp Ala Gly Lys
Glu Leu Glu Thr Gln Lys Glu 1560 1565 1570 gtg gtg gtg tca atg tta
ctg aga ctc atc cag tac cat cag gtg 4903Val Val Val Ser Met Leu Leu
Arg Leu Ile Gln Tyr His Gln Val 1575 1580 1585 ttg gag atg ttc att
ctt gtc ctg cag cag tgc cac aag gag aat 4948Leu Glu Met Phe Ile Leu
Val Leu Gln Gln Cys His Lys Glu Asn 1590 1595 1600 gaa gac aag tgg
aag cga ctg tct cga cag ata gct gac atc atc 4993Glu Asp Lys Trp Lys
Arg Leu Ser Arg Gln Ile Ala Asp Ile Ile 1605 1610 1615 ctc cca atg
tta gcc aaa cag cag atg cac att gac tct cat gaa 5038Leu Pro Met Leu
Ala Lys Gln Gln Met His Ile Asp Ser His Glu 1620 1625 1630 gcc ctt
gga gtg tta aat aca tta ttt gag att ttg gcc cct tcc 5083Ala Leu Gly
Val Leu Asn Thr Leu Phe Glu Ile Leu Ala Pro Ser 1635 1640 1645 tcc
ctc cgt ccg gta gac atg ctt tta cgg agt atg ttc gtc act 5128Ser Leu
Arg Pro Val Asp Met Leu Leu Arg Ser Met Phe Val Thr 1650 1655 1660
cca aac aca atg gcg tcc gtg agc act gtt caa ctg tgg ata tcg 5173Pro
Asn Thr Met Ala Ser Val Ser Thr Val Gln Leu Trp Ile Ser 1665 1670
1675 gga att ctg gcc att ttg agg gtt ctg att tcc cag tca act gaa
5218Gly Ile Leu Ala Ile Leu Arg Val Leu Ile Ser Gln Ser Thr Glu
1680 1685 1690 gat att gtt ctt tct cgt att cag gag ctc tcc ttc tct
ccg tat 5263Asp Ile Val Leu Ser Arg Ile Gln Glu Leu Ser Phe Ser Pro
Tyr 1695 1700 1705 tta atc tcc tgt aca gta att aat agg tta aga gat
ggg gac agt 5308Leu Ile Ser Cys Thr Val Ile Asn Arg Leu Arg Asp Gly
Asp Ser 1710 1715 1720 act tca acg cta gaa gaa cac agt gaa ggg aaa
caa ata aag aat 5353Thr Ser Thr Leu Glu Glu His Ser Glu Gly Lys Gln
Ile Lys Asn 1725 1730 1735 ttg cca gaa gaa aca ttt tca agg ttt cta
tta caa ctg gtt ggt 5398Leu Pro Glu Glu Thr Phe Ser Arg Phe Leu Leu
Gln Leu Val Gly 1740 1745 1750 att ctt tta gaa gac att gtt aca aaa
cag ctg aag gtg gaa atg 5443Ile Leu Leu Glu Asp Ile Val Thr Lys Gln
Leu Lys Val Glu Met 1755 1760 1765 agt gag cag caa cat act ttc tat
tgc cag gaa cta ggc aca ctg 5488Ser Glu Gln Gln His Thr Phe Tyr Cys
Gln Glu Leu Gly Thr Leu 1770 1775 1780 cta atg tgt ctg atc cac atc
ttc aag tct gga atg ttc cgg aga 5533Leu Met Cys Leu Ile His Ile Phe
Lys Ser Gly Met Phe Arg Arg 1785 1790 1795 atc aca gca gct gcc act
agg ctg ttc cgc agt gat ggc tgt ggc 5578Ile Thr Ala Ala Ala Thr Arg
Leu Phe Arg Ser Asp Gly Cys Gly 1800 1805 1810 ggc agt ttc tac acc
ctg gac agc ttg aac ttg cgg gct cgt tcc 5623Gly Ser Phe Tyr Thr Leu
Asp Ser Leu Asn Leu Arg Ala Arg Ser 1815 1820 1825 atg atc acc acc
cac ccg gcc ctg gtg ctg ctc tgg tgt cag ata 5668Met Ile Thr Thr His
Pro Ala Leu Val Leu Leu Trp Cys Gln Ile 1830 1835 1840 ctg ctg ctt
gtc aac cac acc gac tac cgc tgg tgg gca gaa gtg 5713Leu Leu Leu Val
Asn His Thr Asp Tyr Arg Trp Trp Ala Glu Val 1845 1850 1855 cag cag
acc ccg aaa aga cac agt ctg tcc agc aca aag tta ctt 5758Gln Gln Thr
Pro Lys Arg His Ser Leu Ser Ser Thr Lys Leu Leu 1860 1865 1870 agt
ccc cag atg tct gga gaa gag gag gat tct gac ttg gca gcc 5803Ser Pro
Gln Met Ser Gly Glu Glu Glu Asp Ser Asp Leu Ala Ala 1875 1880 1885
aaa ctt gga atg tgc aat aga gaa ata gta cga aga ggg gct ctc 5848Lys
Leu Gly Met Cys Asn Arg Glu Ile Val Arg Arg Gly Ala Leu 1890 1895
1900 att ctc ttc tgt gat tat gtc tgt cag aac ctc cat gac tcc gag
5893Ile Leu Phe Cys Asp Tyr Val Cys Gln Asn Leu His Asp Ser Glu
1905 1910 1915 cac tta acg tgg ctc att gta aat cac att caa gat ctg
atc agc 5938His Leu Thr Trp Leu Ile Val Asn His Ile Gln Asp Leu Ile
Ser 1920 1925 1930 ctt tcc cac gag cct cca gta cag gac ttc atc agt
gcc gtt cat 5983Leu Ser His Glu Pro Pro Val Gln Asp Phe Ile Ser Ala
Val His 1935 1940 1945 cgg aac tct gct gcc agc ggc ctg ttc atc cag
gca att cag tct 6028Arg Asn Ser Ala Ala Ser Gly Leu Phe Ile Gln Ala
Ile Gln Ser 1950 1955 1960 cgt tgt gaa aac ctt tca act cca acc atg
ctg aag aaa act ctt 6073Arg Cys Glu Asn Leu Ser Thr Pro Thr Met Leu
Lys Lys Thr Leu 1965 1970 1975 cag tgc ttg gag ggg atc cat ctc agc
cag tcg gga gct gtg ctc 6118Gln Cys Leu Glu Gly Ile His Leu Ser Gln
Ser Gly Ala Val Leu 1980 1985 1990 acg ctg tat gtg gac agg ctt ctg
tgc acc cct ttc cgt gtg ctg 6163Thr Leu Tyr Val Asp Arg Leu Leu Cys
Thr Pro Phe Arg Val Leu 1995 2000 2005 gct cgc atg gtc gac atc ctt
gct tgt cgc cgg gta gaa atg ctt 6208Ala Arg Met Val Asp Ile Leu Ala
Cys Arg Arg Val Glu Met Leu 2010 2015 2020 ctg gct gca aat tta cag
agc agc atg gcc cag ttg cca atg gaa 6253Leu Ala Ala Asn Leu Gln Ser
Ser Met Ala Gln Leu Pro Met Glu
2025 2030 2035 gaa ctc aac aga atc cag gaa tac ctt cag agc agc ggg
ctc gct 6298Glu Leu Asn Arg Ile Gln Glu Tyr Leu Gln Ser Ser Gly Leu
Ala 2040 2045 2050 cag aga cac caa agg ctc tat tcc ctg ctg gac agg
ttt cgt ctc 6343Gln Arg His Gln Arg Leu Tyr Ser Leu Leu Asp Arg Phe
Arg Leu 2055 2060 2065 tcc acc atg caa gac tca ctt agt ccc tct cct
cca gtc tct tcc 6388Ser Thr Met Gln Asp Ser Leu Ser Pro Ser Pro Pro
Val Ser Ser 2070 2075 2080 cac ccg ctg gac ggg gat ggg cac gtg tca
ctg gaa aca gtg agt 6433His Pro Leu Asp Gly Asp Gly His Val Ser Leu
Glu Thr Val Ser 2085 2090 2095 ccg gac aaa gac tgg tac gtt cat ctt
gtc aaa tcc cag tgt tgg 6478Pro Asp Lys Asp Trp Tyr Val His Leu Val
Lys Ser Gln Cys Trp 2100 2105 2110 acc agg tca gat tct gca ctg ctg
gaa ggt gca gag ctg gtg aat 6523Thr Arg Ser Asp Ser Ala Leu Leu Glu
Gly Ala Glu Leu Val Asn 2115 2120 2125 cgg att cct gct gaa gat atg
aat gcc ttc atg atg aac tcg gag 6568Arg Ile Pro Ala Glu Asp Met Asn
Ala Phe Met Met Asn Ser Glu 2130 2135 2140 ttc aac cta agc ctg cta
gct cca tgc tta agc cta ggg atg agt 6613Phe Asn Leu Ser Leu Leu Ala
Pro Cys Leu Ser Leu Gly Met Ser 2145 2150 2155 gaa att tct ggt ggc
cag aag agt gcc ctt ttt gaa gca gcc cgt 6658Glu Ile Ser Gly Gly Gln
Lys Ser Ala Leu Phe Glu Ala Ala Arg 2160 2165 2170 gag gtg act ctg
gcc cgt gtg agc ggc acc gtg cag cag ctc cct 6703Glu Val Thr Leu Ala
Arg Val Ser Gly Thr Val Gln Gln Leu Pro 2175 2180 2185 gct gtc cat
cat gtc ttc cag ccc gag ctg cct gca gag ccg gcg 6748Ala Val His His
Val Phe Gln Pro Glu Leu Pro Ala Glu Pro Ala 2190 2195 2200 gcc tac
tgg agc aag ttg aat gat ctg ttt ggg gat gct gca ctg 6793Ala Tyr Trp
Ser Lys Leu Asn Asp Leu Phe Gly Asp Ala Ala Leu 2205 2210 2215 tat
cag tcc ctg ccc act ctg gcc cgg gcc ctg gca cag tac ctg 6838Tyr Gln
Ser Leu Pro Thr Leu Ala Arg Ala Leu Ala Gln Tyr Leu 2220 2225 2230
gtg gtg gtc tcc aaa ctg ccc agt cat ttg cac ctt cct cct gag 6883Val
Val Val Ser Lys Leu Pro Ser His Leu His Leu Pro Pro Glu 2235 2240
2245 aaa gag aag gac att gtg aaa ttc gtg gtg gca acc ctt gag gcc
6928Lys Glu Lys Asp Ile Val Lys Phe Val Val Ala Thr Leu Glu Ala
2250 2255 2260 ctg tcc tgg cat ttg atc cat gag cag atc ccg ctg agt
ctg gat 6973Leu Ser Trp His Leu Ile His Glu Gln Ile Pro Leu Ser Leu
Asp 2265 2270 2275 ctc cag gca ggg ctg gac tgc tgc tgc ctg gcc ctg
cag ctg cct 7018Leu Gln Ala Gly Leu Asp Cys Cys Cys Leu Ala Leu Gln
Leu Pro 2280 2285 2290 ggc ctc tgg agc gtg gtc tcc tcc aca gag ttt
gtg acc cac gcc 7063Gly Leu Trp Ser Val Val Ser Ser Thr Glu Phe Val
Thr His Ala 2295 2300 2305 tgc tcc ctc atc tac tgt gtg cac ttc atc
ctg gag gcc gtt gca 7108Cys Ser Leu Ile Tyr Cys Val His Phe Ile Leu
Glu Ala Val Ala 2310 2315 2320 gtg cag cct gga gag cag ctt ctt agt
cca gaa aga agg aca aat 7153Val Gln Pro Gly Glu Gln Leu Leu Ser Pro
Glu Arg Arg Thr Asn 2325 2330 2335 acc cca aaa gcc atc agc gag gag
gag gag gaa gta gat cca aac 7198Thr Pro Lys Ala Ile Ser Glu Glu Glu
Glu Glu Val Asp Pro Asn 2340 2345 2350 aca cag aat cct aag tat atc
act gca gcc tgt gag atg gtg gca 7243Thr Gln Asn Pro Lys Tyr Ile Thr
Ala Ala Cys Glu Met Val Ala 2355 2360 2365 gaa atg gtg gag tct ctg
cag tcg gtg ttg gcc ttg ggt cat aaa 7288Glu Met Val Glu Ser Leu Gln
Ser Val Leu Ala Leu Gly His Lys 2370 2375 2380 agg aat agc ggc gtg
ccg gcg ttt ctc acg cca ttg cta agg aac 7333Arg Asn Ser Gly Val Pro
Ala Phe Leu Thr Pro Leu Leu Arg Asn 2385 2390 2395 atc atc atc agc
ctg gcc cgc ctg ccc ctt gtc aac agc tac aca 7378Ile Ile Ile Ser Leu
Ala Arg Leu Pro Leu Val Asn Ser Tyr Thr 2400 2405 2410 cgt gtg ccc
cca ctg gtg tgg aag ctt gga tgg tca ccc aaa ccg 7423Arg Val Pro Pro
Leu Val Trp Lys Leu Gly Trp Ser Pro Lys Pro 2415 2420 2425 gga ggg
gat ttt ggc aca gca ttc cct gag atc ccc gtg gag ttc 7468Gly Gly Asp
Phe Gly Thr Ala Phe Pro Glu Ile Pro Val Glu Phe 2430 2435 2440 ctc
cag gaa aag gaa gtc ttt aag gag ttc atc tac cgc atc aac 7513Leu Gln
Glu Lys Glu Val Phe Lys Glu Phe Ile Tyr Arg Ile Asn 2445 2450 2455
aca cta ggc tgg acc agt cgt act cag ttt gaa gaa act tgg gcc 7558Thr
Leu Gly Trp Thr Ser Arg Thr Gln Phe Glu Glu Thr Trp Ala 2460 2465
2470 acc ctc ctt ggt gtc ctg gtg acg cag ccc ctc gtg atg gag cag
7603Thr Leu Leu Gly Val Leu Val Thr Gln Pro Leu Val Met Glu Gln
2475 2480 2485 gag gag agc cca cca gaa gaa gac aca gag agg acc cag
atc aac 7648Glu Glu Ser Pro Pro Glu Glu Asp Thr Glu Arg Thr Gln Ile
Asn 2490 2495 2500 gtc ctg gcc gtg cag gcc atc acc tca ctg gtg ctc
agt gca atg 7693Val Leu Ala Val Gln Ala Ile Thr Ser Leu Val Leu Ser
Ala Met 2505 2510 2515 act gtg cct gtg gcc ggc aac cca gct gta agc
tgc ttg gag cag 7738Thr Val Pro Val Ala Gly Asn Pro Ala Val Ser Cys
Leu Glu Gln 2520 2525 2530 cag ccc cgg aac aag cct ctg aaa gct ctc
gac acc agg ttt ggg 7783Gln Pro Arg Asn Lys Pro Leu Lys Ala Leu Asp
Thr Arg Phe Gly 2535 2540 2545 agg aag ctg agc att atc aga ggg att
gtg gag caa gag att caa 7828Arg Lys Leu Ser Ile Ile Arg Gly Ile Val
Glu Gln Glu Ile Gln 2550 2555 2560 gca atg gtt tca aag aga gag aat
att gcc acc cat cat tta tat 7873Ala Met Val Ser Lys Arg Glu Asn Ile
Ala Thr His His Leu Tyr 2565 2570 2575 cag gca tgg gat cct gtc cct
tct ctg tct ccg gct act aca ggt 7918Gln Ala Trp Asp Pro Val Pro Ser
Leu Ser Pro Ala Thr Thr Gly 2580 2585 2590 gcc ctc atc agc cac gag
aag ctg ctg cta cag atc aac ccc gag 7963Ala Leu Ile Ser His Glu Lys
Leu Leu Leu Gln Ile Asn Pro Glu 2595 2600 2605 cgg gag ctg ggg agc
atg agc tac aaa ctc ggc cag gtg tcc ata 8008Arg Glu Leu Gly Ser Met
Ser Tyr Lys Leu Gly Gln Val Ser Ile 2610 2615 2620 cac tcc gtg tgg
ctg ggg aac agc atc aca ccc ctg agg gag gag 8053His Ser Val Trp Leu
Gly Asn Ser Ile Thr Pro Leu Arg Glu Glu 2625 2630 2635 gaa tgg gac
gag gaa gag gag gag gag gcc gac gcc cct gca cct 8098Glu Trp Asp Glu
Glu Glu Glu Glu Glu Ala Asp Ala Pro Ala Pro 2640 2645 2650 tcg tca
cca ccc acg tct cca gtc aac tcc agg aaa cac cgg gct 8143Ser Ser Pro
Pro Thr Ser Pro Val Asn Ser Arg Lys His Arg Ala 2655 2660 2665 gga
gtt gac atc cac tcc tgt tcg cag ttt ttg ctt gag ttg tac 8188Gly Val
Asp Ile His Ser Cys Ser Gln Phe Leu Leu Glu Leu Tyr 2670 2675 2680
agc cgc tgg atc ctg ccg tcc agc tca gcc agg agg acc ccg gcc 8233Ser
Arg Trp Ile Leu Pro Ser Ser Ser Ala Arg Arg Thr Pro Ala 2685 2690
2695 atc ctg atc agt gag gtg gtc aga tcc ctt cta gtg gtc tca gac
8278Ile Leu Ile Ser Glu Val Val Arg Ser Leu Leu Val Val Ser Asp
2700 2705 2710 ttg ttc acc gag cgc aac cag ttt gag ctg atg tat gtg
acg ctg 8323Leu Phe Thr Glu Arg Asn Gln Phe Glu Leu Met Tyr Val Thr
Leu 2715 2720 2725 aca gaa ctg cga agg gtg cac cct tca gaa gac gag
atc ctc gct 8368Thr Glu Leu Arg Arg Val His Pro Ser Glu Asp Glu Ile
Leu Ala 2730 2735 2740 cag tac ctg gtg cct gcc acc tgc aag gca gct
gcc gtc ctt ggg 8413Gln Tyr Leu Val Pro Ala Thr Cys Lys Ala Ala Ala
Val Leu Gly 2745 2750 2755 atg gac aag gcc gtg gcg gag cct gtc agc
cgc ctg ctg gag agc 8458Met Asp Lys Ala Val Ala Glu Pro Val Ser Arg
Leu Leu Glu Ser 2760 2765 2770 acg ctc agg agc agc cac ctg ccc agc
agg gtt gga gcc ctg cac 8503Thr Leu Arg Ser Ser His Leu Pro Ser Arg
Val Gly Ala Leu His 2775 2780 2785 ggc gtc ctc tat gtg ctg gag tgc
gac ctg ctg gac gac act gcc 8548Gly Val Leu Tyr Val Leu Glu Cys Asp
Leu Leu Asp Asp Thr Ala 2790 2795 2800 aag cag ctc atc ccg gtc atc
agc gac tat ctc ctc tcc aac ctg 8593Lys Gln Leu Ile Pro Val Ile Ser
Asp Tyr Leu Leu Ser Asn Leu 2805 2810 2815 aaa ggg atc gcc cac tgc
gtg aac att cac agc cag cag cac gta 8638Lys Gly Ile Ala His Cys Val
Asn Ile His Ser Gln Gln His Val 2820 2825 2830 ctg gtc atg tgt gcc
act gcg ttt tac ctc att gag aac tat cct 8683Leu Val Met Cys Ala Thr
Ala Phe Tyr Leu Ile Glu Asn Tyr Pro 2835 2840 2845 ctg gac gta ggg
ccg gaa ttt tca gca tca ata ata cag atg tgt 8728Leu Asp Val Gly Pro
Glu Phe Ser Ala Ser Ile Ile Gln Met Cys 2850 2855 2860 ggg gtg atg
ctg tct gga agt gag gag tcc acc ccc tcc atc att 8773Gly Val Met Leu
Ser Gly Ser Glu Glu Ser Thr Pro Ser Ile Ile 2865 2870 2875 tac cac
tgt gcc ctc aga ggc ctg gag cgc ctc ctg ctc tct gag 8818Tyr His Cys
Ala Leu Arg Gly Leu Glu Arg Leu Leu Leu Ser Glu 2880 2885 2890 cag
ctc tcc cgc ctg gat gca gaa tcg ctg gtc aag ctg agt gtg 8863Gln Leu
Ser Arg Leu Asp Ala Glu Ser Leu Val Lys Leu Ser Val 2895 2900 2905
gac aga gtg aac gtg cac agc ccg cac cgg gcc atg gcg gct ctg 8908Asp
Arg Val Asn Val His Ser Pro His Arg Ala Met Ala Ala Leu 2910 2915
2920 ggc ctg atg ctc acc tgc atg tac aca gga aag gag aaa gtc agt
8953Gly Leu Met Leu Thr Cys Met Tyr Thr Gly Lys Glu Lys Val Ser
2925 2930 2935 ccg ggt aga act tca gac cct aat cct gca gcc ccc gac
agc gag 8998Pro Gly Arg Thr Ser Asp Pro Asn Pro Ala Ala Pro Asp Ser
Glu 2940 2945 2950 tca gtg att gtt gct atg gag cgg gta tct gtt ctt
ttt gat agg 9043Ser Val Ile Val Ala Met Glu Arg Val Ser Val Leu Phe
Asp Arg 2955 2960 2965 atc agg aaa ggc ttt cct tgt gaa gcc aga gtg
gtg gcc agg atc 9088Ile Arg Lys Gly Phe Pro Cys Glu Ala Arg Val Val
Ala Arg Ile 2970 2975 2980 ctg ccc cag ttt cta gac gac ttc ttc cca
ccc cag gac atc atg 9133Leu Pro Gln Phe Leu Asp Asp Phe Phe Pro Pro
Gln Asp Ile Met 2985 2990 2995 aac aaa gtc atc gga gag ttt ctg tcc
aac cag cag cca tac ccc 9178Asn Lys Val Ile Gly Glu Phe Leu Ser Asn
Gln Gln Pro Tyr Pro 3000 3005 3010 cag ttc atg gcc acc gtg gtg tat
aag gtg ttt cag act ctg cac 9223Gln Phe Met Ala Thr Val Val Tyr Lys
Val Phe Gln Thr Leu His 3015 3020 3025 agc acc ggg cag tcg tcc atg
gtc cgg gac tgg gtc atg ctg tcc 9268Ser Thr Gly Gln Ser Ser Met Val
Arg Asp Trp Val Met Leu Ser 3030 3035 3040 ctc tcc aac ttc acg cag
agg gcc ccg gtc gcc atg gcc acg tgg 9313Leu Ser Asn Phe Thr Gln Arg
Ala Pro Val Ala Met Ala Thr Trp 3045 3050 3055 agc ctc tcc tgc ttc
ttt gtc agc gcg tcc acc agc ccg tgg gtc 9358Ser Leu Ser Cys Phe Phe
Val Ser Ala Ser Thr Ser Pro Trp Val 3060 3065 3070 gcg gcg atc ctc
cca cat gtc atc agc agg atg ggc aag ctg gag 9403Ala Ala Ile Leu Pro
His Val Ile Ser Arg Met Gly Lys Leu Glu 3075 3080 3085 cag gtg gac
gtg aac ctt ttc tgc ctg gtc gcc aca gac ttc tac 9448Gln Val Asp Val
Asn Leu Phe Cys Leu Val Ala Thr Asp Phe Tyr 3090 3095 3100 aga cac
cag ata gag gag gag ctc gac cgc agg gcc ttc cag tct 9493Arg His Gln
Ile Glu Glu Glu Leu Asp Arg Arg Ala Phe Gln Ser 3105 3110 3115 gtg
ctt gag gtg gtt gca gcc cca gga agc cca tat cac cgg ctg 9538Val Leu
Glu Val Val Ala Ala Pro Gly Ser Pro Tyr His Arg Leu 3120 3125 3130
ctg act tgt tta cga aat gtc cac aag gtc acc acc tgc tga 9580Leu Thr
Cys Leu Arg Asn Val His Lys Val Thr Thr Cys 3135 3140 gcgccatggt
gggagagact gtgaggcggc agctggggcc ggagcctttg gaagtctgcg
9640cccttgtgcc ctgcctccac cgagccagct tggtccctat gggcttccgc
acatgccgcg 9700ggcggccagg caacgtgcgt gtctctgcca tgtggcagaa
gtgctctttg tggcagtggc 9760caggcaggga gtgtctgcag tcctggtggg
gctgagcctg aggccttcca gaaagcagga 9820gcagctgtgc tgcaccccat
gtgggtgacc aggtcctttc tcctgatagt cacctgctgg 9880ttgttgccag
gttgcagctg ctcttgcatc tgggccagaa gtcctccctc ctgcaggctg
9940gctgttggcc cctctgctgt cctgcagtag aaggtgccgt gagcaggctt
tgggaacact 10000ggcctgggtc tccctggtgg ggtgtgcatg ccacgccccg
tgtctggatg cacagatgcc 10060atggcctgtg ctgggccagt ggctgggggt
gctagacacc cggcaccatt ctcccttctc 10120tcttttcttc tcaggattta
aaatttaatt atatcagtaa agagattaat tttaacgtaa 10180ctctttctat
gcccgtgtaa agtatgtgaa tcgcaaggcc tgtgctgcat gcgacagcgt
10240ccggggtggt ggacagggcc cccggccacg ctccctctcc tgtagccact
ggcatagccc 10300tcctgagcac ccgctgacat ttccgttgta catgttcctg
tttatgcatt cacaaggtga 10360ctgggatgta gagaggcgtt agtgggcagg
tggccacagc aggactgagg acaggccccc 10420attatcctag gggtgcgctc
acctgcagcc cctcctcctc gggcacagac gactgtcgtt 10480ctccacccac
cagtcaggga cagcagcctc cctgtcactc agctgagaag gccagccctc
10540cctggctgtg agcagcctcc actgtgtcca gagacatggg cctcccactc
ctgttccttg 10600ctagccctgg ggtggcgtct gcctaggagc tggctggcag
gtgttgggac ctgctgctcc 10660atggatgcat gccctaagag tgtcactgag
ctgtgttttg tctgagcctc tctcggtcaa 10720cagcaaagct tggtgtcttg
gcactgttag tgacagagcc cagcatccct tctgcccccg 10780ttccagctga
catcttgcac ggtgacccct tttagtcagg agagtgcaga tctgtgctca
10840tcggagactg ccccacggcc ctgtcagagc cgccactcct atccccaggc
caggtccctg 10900gaccagcctc ctgtttgcag gcccagagga gccaagtcat
taaaatggaa gtggattctg 10960gatggccggg ctgctgctga tgtaggagct
ggatttggga gctctgcttg ccgactggct 11020gtgagacgag gcaggggctc
tgcttcctca gccctagagg cgagccaggc aaggttggcg 11080actgtcatgt
ggcttggttt ggtcatgccc gtcgatgttt tgggtattga atgtggtaag
11140tggaggaaat gttggaactc tgtgcaggtg ctgccttgag acccccaagc
ttccacctgt 11200ccctctccta tgtggcagct ggggagcagc tgagatgtgg
acttgtatgc tgcccacata
11260cgtgaggggg agctgaaagg gagcccctcc tctgagcagc ctctgccagg
cctgtatgag 11320gcttttccca ccagctccca acagaggcct cccccagcca
ggaccacctc gtcctcgtgg 11380cggggcagca ggagcggtag aaaggggtcc
gatgtttgag gaggccctta agggaagcta 11440ctgaattata acacgtaaga
aaatcaccat tccgtattgg ttgggggctc ctgtttctca 11500tcctagcttt
ttcctggaaa gcccgctaga aggtttggga acgaggggaa agttctcaga
11560actgttggct gctccccacc cgcctcccgc ctcccccgca ggttatgtca
gcagctctga 11620gacagcagta tcacaggcca gatgttgttc ctggctagat
gtttacattt gtaagaaata 11680acactgtgaa tgtaaaacag agccattccc
ttggaatgca tatcgctggg ctcaacatag 11740agtttgtctt cctcttgttt
acgacgtgat ctaaaccagt ccttagcaag gggctcagaa 11800caccccgctc
tggcagtagg tgtcccccac ccccaaagac ctgcctgtgt gctccggaga
11860tgaatatgag ctcattagta aaaatgactt cacccacgca tatacataaa
gtatccatgc 11920atgtgcatat agacacatct ataattttac acacacacct
ctcaagacgg agatgcatgg 11980cctctaagag tgcccgtgtc ggttcttcct
ggaagttgac tttccttaga cccgccaggt 12040caagttagcc gcgtgacgga
catccaggcg tgggacgtgg tcagggcagg gctcattcat 12100tgcccactag
gatcccactg gcgaagatgg tctccatatc agctctctgc agaagggagg
12160aagactttat catgttccta aaaatctgtg gcaagcaccc atcgtattat
ccaaattttg 12220ttgcaaatgt gattaatttg gttgtcaagt tttgggggtg
ggctgtgggg agattgcttt 12280tgttttcctg ctggtaatat cgggaaagat
tttaatgaaa ccagggtaga attgtttggc 12340aatgcactga agcgtgtttc
tttcccaaaa tgtgcctccc ttccgctgcg ggcccagctg 12400agtctatgta
ggtgatgttt ccagctgcca agtgctcttt gttactgtcc accctcattt
12460ctgccagcgc atgtgtcctt tcaaggggaa aatgtgaagc tgaaccccct
ccagacaccc 12520agaatgtagc atctgagaag gccctgtgcc ctaaaggaca
cccctcgccc ccatcttcat 12580ggagggggtc atttcagagc cctcggagcc
aatgaacagc tcctcctctt ggagctgaga 12640tgagccccac gtggagctcg
ggacggatag tagacagcaa taactcggtg tgtggccgcc 12700tggcaggtgg
aacttcctcc cgttgcgggg tggagtgagg ttagttctgt gtgtctggtg
12760ggtggagtca ggcttctctt gctacctgtg agcatccttc ccagcagaca
tcctcatcgg 12820gctttgtccc tcccccgctt cctccctctg cggggaggac
ccgggaccac agctgctggc 12880cagggtagac ttggagctgt cctccagagg
ggtcacgtgt aggagtgaga agaaggaaga 12940tcttgagagc tgctgaggga
ccttggagag ctcaggatgg ctcagacgag gacactcgct 13000tgccgggcct
gggcctcctg ggaaggaggg agctgctcag aatgccgcat gacaactgaa
13060ggcaacctgg aaggttcagg ggccgctctt cccccatgtg cctgtcacgc
tctggtgcag 13120tcaaaggaac gccttcccct cagttgtttc taagagcaga
gtctcccgct gcaatctggg 13180tggtaactgc cagccttgga ggatcgtggc
caacgtggac ctgcctacgg agggtgggct 13240ctgacccaag tggggcctcc
ttgtccaggt ctcactgctt tgcaccgtgg tcagagggac 13300tgtcagctga
gcttgagctc ccctggagcc agcagggctg tgatgggcga gtcccggagc
13360cccacccaga cctgaatgct tctgagagca aagggaagga ctgacgagag
atgtatattt 13420aattttttaa ctgctgcaaa cattgtacat ccaaattaaa
ggaaaaaaat ggaaaccatc 13480a 13481320DNAArtificial sequencePrimer
3gggaccctga tcaacaccat 20424DNAArtificial sequencePrimer
4ccagttcttg attttgtcga aaca 24518DNAArtificial sequenceProbe
5tgggtggtct ccgcggcc 18616DNAArtificial sequenceSynthetic
oligonucleotide 6nnnnnnnnnn nnnnnn 16714DNAArtificial
sequenceSynthetic oligonucleotide 7nnnnnnnnnn nnnn
14820DNAArtificial sequenceSynthetic oligonucleotide 8nnnnnnnnnn
nnnnnnnnnn 20920DNAArtificial sequenceSynthetic oligonucleotide
9ccttccctga aggttcctcc 201015DNAArtificial sequenceSynthetic
oligonucleotide 10taaattgtca tcacc 151115DNAArtificial
sequenceSynthetic oligonucleotide 11taaattguca tcacc
151215DNAArtificial sequenceSynthetic oligonucleotide 12taaattgnca
tcacc 151315DNAArtificial sequenceSynthetic oligonucleotide
13taaautgtca tcacc 151416DNAArtificial sequenceSynthetic
oligonucleotide 14taaattgtca tcacca 161518DNAArtificial
sequenceSynthetic oligonucleotide 15taaattgtca tcacctta
181620DNAArtificial sequenceSynthetic oligonucleotide 16taaattgtca
tcaccattta 201717DNAArtificial sequenceSynthetic oligonucleotide
17taaattgtca tcaccta 171819DNAArtificial sequenceSynthetic
oligonucleotide 18taaattgtca tcaccttta 191916DNAArtificial
sequenceSynthetic oligonucleotide 19gtaaattgtc atcacc
162017DNAArtificial sequenceSynthetic oligonucleotide 20ggtaaattgt
catcacc 172118DNAArtificial sequenceSynthetic oligonucleotide
21ggttaaattg tcatcacc 182219DNAArtificial sequenceSynthetic
oligonucleotide 22ggtgtaaatt gtcatcacc 192320DNAArtificial
sequenceSynthetic oligonucleotide 23ggtgataaat tgtcatcacc
202421DNAArtificial sequenceSynthetic oligonucleotide 24ggctaaattg
tcatcaccgc c 212519DNAArtificial sequenceSynthetic oligonucleotide
25gctaaattgt catcaccgc 192621DNAArtificial sequenceSynthetic
oligonucleotide 26taataaattg tcatcacctt a 212719DNAArtificial
sequenceSynthetic oligonucleotide 27aataaattgt catcacctt
192821DNAArtificial sequenceSynthetic oligonucleotide 28tcttaaattg
tcatcaccag a 212919DNAArtificial sequenceSynthetic oligonucleotide
29cttaaattgt catcaccag 193018DNAArtificial sequenceSynthetic
oligonucleotide 30taataaattg tcatcacc 183117DNAArtificial
sequenceSynthetic oligonucleotide 31aataaattgt catcacc
173217DNAArtificial sequenceSynthetic oligonucleotide 32ataaattgtc
atcacca 173317DNAArtificial sequenceSynthetic oligonucleotide
33ataaattctc atcacca 173417DNAArtificial sequenceSynthetic
oligonucleotide 34ataaatagtc atcacca 173517DNAArtificial
sequenceSynthetic oligonucleotide 35ataaattgtg atcacca
173617DNAArtificial sequenceSynthetic oligonucleotide 36ataaattgtc
ttcacca 173717DNAArtificial sequenceSynthetic oligonucleotide
37ataaattgtc aacacca 173815DNAArtificial sequenceSynthetic
oligonucleotide 38taaattctca tcacc 153915DNAArtificial
sequenceSynthetic oligonucleotide 39taaaatgtca tcacc
154015DNAArtificial sequenceSynthetic oligonucleotide 40taaattgtga
tcacc 154115DNAArtificial sequenceSynthetic oligonucleotide
41taaattgtct tcacc 154215DNAArtificial sequenceSynthetic
oligonucleotide 42taaattgtca acacc 154317DNAArtificial
sequenceSynthetic oligonucleotide 43ttaaattgtc atcacca
174417DNAArtificial sequenceSynthetic oligonucleotide 44aaaaattgtc
atcacca 174517DNAArtificial sequenceSynthetic oligonucleotide
45attaattgtc atcacca 174617DNAArtificial sequenceSynthetic
oligonucleotide 46atatattgtc atcacca 174717DNAArtificial
sequenceSynthetic oligonucleotide 47ataatttgtc atcacca
174817DNAArtificial sequenceSynthetic oligonucleotide 48ataaattgtc
atgacca 174917DNAArtificial sequenceSynthetic oligonucleotide
49ataaattgtc atctcca 175017DNAArtificial sequenceSynthetic
oligonucleotide 50ataaattgtc atcagca 175117DNAArtificial
sequenceSynthetic oligonucleotide 51ataaattgtc atcacga
175217DNAArtificial sequenceSynthetic oligonucleotide 52ataaattgtc
atcacct 175315DNAArtificial sequenceSynthetic oligonucleotide
53taagttgtca tcacc 155415DNAArtificial sequenceSynthetic
oligonucleotide 54taaagtgtca tcacc 155515DNAArtificial
sequenceSynthetic oligonucleotide 55taaatggtca tcacc
155620DNAArtificial sequenceSynthetic oligonucleotide 56tctctattgc
acattccaag 205720DNAArtificial sequenceSynthetic oligonucleotide
57ccttccctga aggttcctcc 205817DNAArtificial sequenceSynthetic
oligonucleotide 58aattgtcatc accagaa 175917DNAArtificial
sequenceSynthetic oligonucleotide 59aattgtcatc accagaa
176017DNAArtificial sequenceSynthetic oligonucleotide 60aaattgtcat
caccaga 176117DNAArtificial sequenceSynthetic oligonucleotide
61taaattgtca tcaccag 176217DNAArtificial sequenceSynthetic
oligonucleotide 62aataaattgt catcacc 176317DNAArtificial
sequenceSynthetic oligonucleotide 63taataaattg tcatcac
176417DNAArtificial sequenceSynthetic oligonucleotide 64ttaataaatt
gtcatca 176515DNAArtificial sequenceSynthetic oligonucleotide
65attgtcatca ccaga 156615DNAArtificial sequenceSynthetic
oligonucleotide 66ttaataaatt gtcat 156715DNAArtificial
sequenceSynthetic oligonucleotide 67ttgtcatcac cagaa
156815DNAArtificial sequenceSynthetic oligonucleotide 68aattgtcatc
accag 156915DNAArtificial sequenceSynthetic oligonucleotide
69aaattgtcat cacca 157015DNAArtificial sequenceSynthetic
oligonucleotide 70aataaattgt catca 157115DNAArtificial
sequenceSynthetic oligonucleotide 71attaataaat tgtca
157215DNAArtificial sequenceSynthetic oligonucleotide 72tattaataaa
ttgtc 157315DNAArtificial sequenceSynthetic oligonucleotide
73gtcatcacca gaaaa 157415DNAArtificial sequenceSynthetic
oligonucleotide 74tgtcatcacc agaaa 157515DNAArtificial
sequenceSynthetic oligonucleotide 75ataaattgtc atcac
157615DNAArtificial sequenceSynthetic oligonucleotide 76taataaattg
tcatc 157717DNAArtificial sequenceSynthetic oligonucleotide
77ataaaatgtc atcacca 177815DNAArtificial sequenceSynthetic
oligonucleotide 78taaatagtca tcacc 157920DNAArtificial
sequenceSynthetic oligonucleotide 79ctcgactaaa gcaggatttc
208019DNAArtificial sequenceSynthetic oligonucleotide 80aataaattgt
catcaccag 198119DNAArtificial sequenceSynthetic oligonucleotide
81cacagtgcta cccaacctt 198219DNAArtificial sequenceSynthetic
oligonucleotide 82tcacagctat cttctcatc 198320DNAArtificial
sequenceSynthetic oligonucleotide 83tcccatttca ggagacctgg
208420DNAArtificial sequenceSynthetic oligonucleotide 84gctgattaga
gagaggtccc 208516DNAArtificial sequenceSynthetic oligonucleotide
85atcatggctg cagctt 168616DNAArtificial sequenceSynthetic
oligonucleotide 86ttcagtcatg acttcc 168716DNAArtificial
sequenceSynthetic oligonucleotide 87tggctgcagc ttccga
168816DNAArtificial sequenceSynthetic oligonucleotide 88atggctgcag
cttccg 168916DNAArtificial sequenceSynthetic oligonucleotide
89catggctgca gcttcc 169016DNAArtificial sequenceSynthetic
oligonucleotide 90tcatggctgc agcttc 169116DNAArtificial
sequenceSynthetic oligonucleotide 91catcatggct gcagct
169216DNAArtificial sequenceSynthetic oligonucleotide 92ccatcatggc
tgcagc 169316DNAArtificial sequenceSynthetic oligonucleotide
93tccatcatgg ctgcag 169416DNAArtificial sequenceSynthetic
oligonucleotide 94ttccatcatg gctgca 16
* * * * *
References