U.S. patent application number 12/793446 was filed with the patent office on 2011-03-10 for peptide dicer substrate agents and methods for their specific inhibition of gene expression.
This patent application is currently assigned to Dicerna Pharmaceuticals, Inc.. Invention is credited to Sujit K. Basu, Bob D. Brown.
Application Number | 20110059187 12/793446 |
Document ID | / |
Family ID | 43298521 |
Filed Date | 2011-03-10 |
United States Patent
Application |
20110059187 |
Kind Code |
A1 |
Basu; Sujit K. ; et
al. |
March 10, 2011 |
PEPTIDE DICER SUBSTRATE AGENTS AND METHODS FOR THEIR SPECIFIC
INHIBITION OF GENE EXPRESSION
Abstract
This invention relates to compounds, compositions, and methods
useful for reducing a target RNA and protein levels via use of
Dicer substrate siRNA (DsiRNA)-peptide conjugates.
Inventors: |
Basu; Sujit K.; (Newton,
MA) ; Brown; Bob D.; (Millington, NJ) |
Assignee: |
Dicerna Pharmaceuticals,
Inc.
Watertown
MA
|
Family ID: |
43298521 |
Appl. No.: |
12/793446 |
Filed: |
June 3, 2010 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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61183818 |
Jun 3, 2009 |
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61183815 |
Jun 3, 2009 |
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Current U.S.
Class: |
424/649 ;
435/375; 435/68.1; 514/34; 514/44A; 530/322 |
Current CPC
Class: |
A61P 31/10 20180101;
A61P 3/00 20180101; A61P 35/04 20180101; C12N 15/111 20130101; A61P
33/12 20180101; A61P 37/06 20180101; A61P 31/12 20180101; C12N
2310/3513 20130101; A61P 35/00 20180101; C12N 2320/32 20130101;
A61P 33/02 20180101; A61P 31/04 20180101; A61P 33/10 20180101; C12N
2310/14 20130101 |
Class at
Publication: |
424/649 ;
530/322; 514/44.A; 435/375; 435/68.1; 514/34 |
International
Class: |
A61K 31/713 20060101
A61K031/713; C07K 2/00 20060101 C07K002/00; A61K 33/24 20060101
A61K033/24; C12N 5/07 20100101 C12N005/07; C12P 21/00 20060101
C12P021/00; A61K 31/704 20060101 A61K031/704; A61P 35/00 20060101
A61P035/00 |
Claims
1. An isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 16 and at most 50
nucleotides in length, and a peptide, wherein said peptide has a
net charge of about +5 or less and wherein the peptide is
conjugated to said dsRNA.
2. An isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 16 and at most 50
nucleotides in length, and a peptide, wherein the peptide has no
net charge and wherein said peptide is conjugated to said
dsRNA.
3. An isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 16 and at most 50
nucleotides in length, and a peptide, wherein said peptide has a
net charge of about +5 or less and wherein said peptide has at
least one anionic amino acid residue. and wherein said peptide is
conjugated to said dsRNA.
4. The isolated composition of claim 3 wherein said anionic amino
acid is glutamic acid or aspartic acid.
5. An isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 6 and at most 19
nucleotides in length, and a peptide, wherein the peptide has a net
charge of about +4 or less and wherein said peptide is conjugated
to said dsRNA.
6. The isolated composition of claim 1, 2, 3 or 5 wherein said
first strand and said second strand have a length that is at least
25 and at most 35 nucleotides, at least 19 and at most 35
nucleotides, at least 19 and at most 24 nucleotides, at least 25
and at most 30 nucleotides, at least 26 and at most 30 nucleotides
or at least 21 and a most 23 nucleotides.
7. The isolated composition of claim 1, 2, 3 or 5 wherein said
second strand comprises an overhang at the 3' terminus.
8. The isolated composition of claim 1, 2, 3 or 5 wherein said
first strand comprises an overhang at the 3' terminus.
9. The isolated composition of claim 1, 2, 3 or 5 wherein at least
one of said second strand and said first strand comprises an
overhang at the 3' terminus.
10. The isolated composition of claims 9, wherein said nucleotides
of said 3' overhang of said first and/or second strand comprise a
modified nucleotide.
11. The isolated composition of claims 9, wherein said 3'
overhang(s) is/are 1-5 nucleotides in length.
12. The isolated composition of claim 1, 2, 3 or 5 wherein each of
said first and second strands consists of the same number of
nucleotide residues.
13. The isolated composition of claim 12, wherein the ultimate
residue of said 5' terminus of said first strand and the ultimate
residue of said 3' terminus of said second strand form a mismatched
base pair.
14. The isolated composition of claim 12, wherein the ultimate
residue of said 3' terminus of said first strand and the ultimate
residue of said 5' terminus of said second strand form a mismatched
base pair.
15. The isolated composition of claim 12 wherein the ultimate and
penultimate residues of said 5' terminus of said first strand and
the ultimate and penultimate residues of said 3' terminus of said
second strand form two mismatched base pairs.
16. The isolated composition of claim 12 wherein the ultimate and
penultimate residues of said 3' terminus of said first strand and
the ultimate and penultimate residues of said 5' terminus of said
second strand form two mismatched base pairs.
17. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises 6-50 amino acids.
18. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises 10-50 amino acids.
19. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises 15-30 amino acids.
20. The isolated composition of claim 1, 2, 3 or 5, wherein said
peptide comprises up to 10 amino acids.
21. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide has a net charge of about +2 or less.
22. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide has a net charge of about +1 or less.
23. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises one or more proline residues.
24. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises one or more hydrophobic amino acid residues.
25. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises five or more cationic amino acid residues.
26. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises four cationic amino acid residues.
27. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises three cationic amino acid residues.
28. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises two cationic amino acid residues.
29. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide comprises one cationic amino acid residue.
30. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide has no cationic amino acid residues.
31. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to said dsRNA with a stable linker.
32. The isolated composition of claim 31, wherein said stable
linker comprises a homobifunctional crosslinker.
33. The isolated composition of claim 31, wherein said stable
linker comprises a hetero-bifunctional crosslinker.
34. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to said dsRNA with a cleavable linker.
35. The isolated composition of claim 34, wherein said cleavable
linker comprises a disulfide linker.
36. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to said dsRNA with a carbon linker.
37. The isolated composition of claim 36, where said carbon linker
comprises no more than eighteen carbons
38. The isolated composition of claim 36, wherein said carbon
linker comprises 6 carbons.
39. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide and said dsRNA are conjugated without a linker.
40. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 3' end of the first strand of said
dsRNA.
41. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 3' end of said second strand of said
dsRNA.
42. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 5' end of the first strand of said
dsRNA.
43. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 5' end of said second strand of said
dsRNA.
44. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 5' end of the first strand and the 5'
end of said second strand of said dsRNA.
45. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 5' end of said first strand and said
3' end of said second strand of said dsRNA.
46. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 3' end of the first strand and the 3'
end of said second strand of said dsRNA.
47. The isolated composition of claim 1, 2, 3 or 5 wherein said
peptide is conjugated to the 3' end of said first strand and said
5' end of said second strand of said dsRNA.
48. The isolated composition of claim 1, 2, 3 or 5 wherein at least
one peptide is conjugated internally to said first strand of said
dsRNA.
49. The isolated composition of claim 1, 2, 3 or 5 wherein at least
one peptide is conjugated internally to said second strand of said
dsRNA.
50. The isolated composition of claim 1, 2, 3 or 5 wherein at least
one peptide is conjugated internally to said first strand and
wherein at least one peptide is conjugated internally to said
second strand of said dsRNA.
51. The isolated composition of claim 1, 2, 3 or 5 wherein at least
two peptides are conjugated to said dsRNA.
52. The isolated composition of claim 51, wherein said at least two
peptides are identical.
53. The isolated composition of claim 51, wherein said at least two
peptides are not identical.
54. The isolated composition of claim 1, 2, 3 or 5 further
comprising at least one dye molecule, and wherein said dye molecule
is conjugated to at least one of said dsRNA and said peptide.
55. The isolated composition of claim 54, wherein said dye molecule
is polyaromatic.
56. The isolated composition of claim 54, wherein said dye is a
fluorescent dye.
57. The isolated composition of claim 1, 2, 3 or 5 further
comprising a therapeutic agent.
58. The isolated composition of claim 57, wherein said therapeutic
agent is an anticancer drug.
59. The isolated composition of claim 58, wherein said anticancer
drug is selected from the group consisting of paclitaxel,
tamoxifen, cisplatin, doxorubicin and vinblastine.
60. The composition of claim 58, wherein said therapeutic agent is
a drug to treat a metabolic disease or disorder.
61. The composition of claim 1, 2, 3 or 5, further comprising at
least one targeting peptide.
62. The isolated composition of claim 1, 2, 3 or 5, wherein said
peptide comprises a portion of a translocation domain of a
toxin.
63. The isolated composition of claim 62, wherein said neurotoxin
is a clostridial neurotoxin.
64. The isolated composition of claim 1, 2, 3 or 5, wherein
starting from the first nucleotide (position 1) at the 3' terminus
of the first oligonucleotide strand of said dsRNA, position 1, 2
and/or 3 is/are substituted with a modified nucleotide.
65. The isolated dsRNA of claim 64 wherein said modified nucleotide
is a deoxyribonucleotide.
66. The isolated dsRNA of claim 1, 2, 3 or 5, wherein one or both
of the first and second oligonucleotide strands comprises a 5'
phosphate.
67. The isolated composition of claim 1, 2, 3 or 5, wherein at
least one nucleotide of said first or second strand is
modified.
68. The isolated composition of claim 67 wherein said modified
nucleotide residues are selected from the group consisting of
2'-O-methyl, 2'-methoxyethoxy, 2'-fluoro, 2'-allyl,
2'-O--[2-(methylamino)-2-oxoethyl], 4'-thio, 4'-CH2-O-2'-bridge,
4'-(CH2)2-O-2'-bridge, 2'-LNA, 2'-amino and
2'-O--(N-methylcarbamate).
69. The isolated composition of claim 1, 2, 3 or 5, wherein said
dsRNA is cleaved endogenously in said cell by Dicer.
70. The isolated composition of claim 1, 2, 3 or 5, wherein the
amount of said isolated double stranded nucleic acid sufficient to
reduce expression of the target gene is selected from the group
consisting of 1 nanomolar or less, 200 picomolar or less, 100
picomolar or less, 50 picomolar or less, 20 picomolar or less and
10 picomolar or less in the environment of said cell.
71. The isolated composition of claim 1, 2, 3 or 5, wherein the
first and second strands are joined by a chemical linker.
72. The isolated composition of claim 1, 2, 3 or 5, wherein said 3'
terminus of said first strand and said 5' terminus of said second
strand are joined by a chemical linker.
73. The isolated composition of claim 1, 2, 3 or 5, wherein a
nucleotide of said second or first strand is substituted with a
modified nucleotide that directs the orientation of Dicer
cleavage.
74. The isolated composition of claim 1, 2, 3 or 5, comprising a
modified nucleotide selected from the group consisting of a
deoxyribonucleotide, a dideoxyribonucleotide, an acyclonucleotide,
a 3'-deoxyadenosine (cordycepin), a 3'-azido-3'-deoxythymidine
(AZT), a 2',3'-dideoxyinosine (ddI), a
2',3'-dideoxy-3'-thiacytidine (3TC), a
2',3'-didehydro-2',3'-dideoxythymidine (d4T), a monophosphate
nucleotide of 3'-azido-3'-deoxythymidine (AZT), a
2',3'-dideoxy-3'-thiacytidine (3TC) and a monophosphate nucleotide
of 2',3'-didehydro-2',3'-dideoxythymidine (d4T), a 4-thiouracil, a
5-bromouracil, a 5-iodouracil, a 5-(3-aminoallyl)-uracil, a
2'-O-alkyl ribonucleotide, a 2'-O-methyl ribonucleotide, a 2'-amino
ribonucleotide, a 2'-fluoro ribonucleotide, and a locked nucleic
acid.
75. The isolated composition of claim 1, 2, 3 or 5 comprising a
phosphate backbone modification selected from the group consisting
of a phosphonate, a phosphorothioate and a phosphotriester.
76. The isolated composition of claim 64, wherein said modified
nucleotide residue of said 3' terminus of said first strand is
selected from the group consisting of a deoxyribonucleotide, an
acyclonucleotide and a fluorescent molecule.
77. The isolated composition of claim 1, 2, 3 or 5, wherein at
least one of said nucleotides of said first strand and at least one
of said nucleotides of said second strand form a mismatched base
pair.
78. The isolated composition of claim 1, 2, 3 or 5, wherein said
peptide has an amino acid sequence selected from the group
consisting of SEQ ID NO: 1-89.
79. A method for reducing expression of a target gene in a cell,
comprising: contacting a cell with said isolated composition as
claimed in claim 1, 2, 3 or 5, in an amount effective to reduce
expression of a target gene in a cell in comparison to a reference
dsRNA.
80. A method for selectively inhibiting the growth of a cell
comprising contacting a cell with an amount of said isolated
composition of claim 1, 2, 3 or 5 sufficient to inhibit the growth
of the cell.
81. A method for reducing expression of a target gene in an animal,
comprising: treating an animal with said isolated composition as
claimed in claim 1, 2, 3 or 5, in an amount effective to reduce
expression of a target gene in a cell of the animal in comparison
to a reference dsRNA.
82. The method of claim 81, wherein said isolated composition
possesses enhanced pharmacokinetics when compared to an appropriate
control dsRNA.
83. The method of claim 81, wherein said dsRNA possesses enhanced
pharmacodynamics when compared to an appropriate control dsRNA.
84. The method of claim 81, wherein said dsRNA possesses reduced
toxicity when compared to an appropriate control dsRNA.
85. The method of claim 81, wherein said dsRNA possesses enhanced
intracellular uptake when compared to an appropriate control
dsRNA.
86. A pharmaceutical composition for reducing expression of a
target gene in a cell of a subject comprising said isolated
composition of claim 1, 2, 3 or 5 in an amount effective to reduce
expression of a target gene in a cell in comparison to a reference
dsRNA and a pharmaceutically acceptable carrier.
87. A method of synthesizing a dsRNA-peptide conjugate as claimed
in any one of claims 1-78, comprising chemically or enzymatically
synthesizing said dsRNA.
88. A kit comprising the dsRNA-peptide conjugate of any one of
claims 1-74 and instructions for its use.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] The present application is related to and claims priority
under 35 U.S.C. .sctn.119(e) to U.S. provisional patent application
No. 61/183,815, filed Jun. 3, 2009, and to U.S. provisional patent
application No. 61/183,818, filed Jun. 3, 2009. The entire
teachings of these applications are incorporated herein by
reference.
FIELD OF THE INVENTION
[0002] The invention relates to peptide-dicer substrate conjugates
and their method of use.
BACKGROUND OF THE INVENTION
[0003] Identification of peptide aptamers is important in view of a
need for safe, efficient delivery of therapeutic molecules. Peptide
aptamers have been described (reviewed in Beldhoen 2008 Int. J.
Mol. Sci. 9:1276-1320; Moschos et al. 2007 Biochemical Society
Transaction Vol. 35, pt 4: 807-810).
BRIEF SUMMARY OF THE INVENTION
[0004] The present invention is directed to compositions that
contain double stranded RNA ("dsRNA") conjugated to peptides and
methods for preparing them. The dsRNAs of the invention are double
stranded RNA, small interfering RNA (siRNA) and Dicer substrate
siRNAs ("DsiRNAs") with structures that are optimized, by
conjugation to a peptide, for efficient delivery and/targeting and
to act as effective and highly potent inhibitory agents, optionally
possessing extended duration of inhibitory effect.
[0005] In one embodiment, the invention provides for an isolated
double stranded ribonucleic acid (dsRNA) composition comprising a
first oligonucleotide strand having a 5' terminus and a 3' terminus
and a second oligonucleotide strand having a 5' terminus and a 3'
terminus wherein said first strand and said second strand have a
length that is at least 16 and at most 50 nucleotides in length,
and a peptide, wherein said peptide has a net charge of about +5 or
less and wherein the peptide is conjugated to said dsRNA.
[0006] In another embodiment, the invention provides for an
isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 16 and at most 50
nucleotides in length, and a peptide, wherein the peptide has no
net charge and wherein said peptide is conjugated to said
dsRNA.
[0007] In another embodiment, the invention provides for an
isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 16 and at most 50
nucleotides in length, and a peptide, wherein said peptide has a
net charge of about +4 or less and wherein said peptide has at
least one anionic amino acid residue. and wherein said peptide is
conjugated to said dsRNA.
[0008] In one aspect the anionic amino acid is glutamic acid or
aspartic acid.
[0009] In another embodiment, the invention provides for an
isolated double stranded ribonucleic acid (dsRNA) composition
comprising a first oligonucleotide strand having a 5' terminus and
a 3' terminus and a second oligonucleotide strand having a 5'
terminus and a 3' terminus wherein said first strand and said
second strand have a length that is at least 6 and at most 19
nucleotides in length, and a peptide, wherein the peptide has a net
charge of about +4 or less and wherein said peptide is conjugated
to said dsRNA.
[0010] In another aspect, the first strand and said second strand
have a length that is at least 25 and at most 35 nucleotides, at
least 19 and at most 35 nucleotides, at least 19 and at most 24
nucleotides, at least 25 and at most 30 nucleotides, at least 26
and at most 30 nucleotides or at least 21 and a most 23
nucleotides.
[0011] In another aspect, the second strand comprises an overhang
at the 3' terminus.
[0012] In another aspect, the first strand comprises an overhang at
the 3' terminus.
[0013] In another aspect, at least one of said second strand and
said first strand comprises an overhang at the 3' terminus.
[0014] In another aspect, the nucleotides of said 3' overhang of
said first and/or second strand comprise a modified nucleotide.
[0015] In another aspect, the 3' overhang(s) is/are 1-5 nucleotides
in length.
[0016] In another aspect, each of said first and second strands
consists of the same number of nucleotide residues.
[0017] In another aspect the ultimate residue of said 5' terminus
of said first strand and the ultimate residue of said 3' terminus
of said second strand form a mismatched base pair.
[0018] In another aspect, the ultimate residue of said 3' terminus
of said first strand and the ultimate residue of said 5' terminus
of said second strand form a mismatched base pair.
[0019] In another aspect, the ultimate and penultimate residues of
said 5' terminus of said first strand and the ultimate and
penultimate residues of said 3' terminus of said second strand form
two mismatched base pairs.
[0020] In another aspect, the ultimate and penultimate residues of
said 3' terminus of said first strand and the ultimate and
penultimate residues of said 5' terminus of said second strand form
two mismatched base pairs.
[0021] In another aspect the peptide comprises 6-50 amino
acids.
[0022] In another aspect, the peptide comprises 10-50 amino
acids.
[0023] In another aspect, the peptide comprises 15-30 amino
acids.
[0024] In another aspect, the peptide comprises up to 10 amino
acids.
[0025] In another aspect, the peptide has a net charge of about +2
or less.
[0026] In another aspect, the peptide has a net charge of about +1
or less.
[0027] In another aspect, the peptide comprises one or more proline
residues.
[0028] In another aspect, the peptide comprises one or more
hydrophobic amino acid residues.
[0029] In another aspect the peptide comprises five or more
cationic amino acid residues.
[0030] In another aspect the peptide comprises four cationic amino
acid residues.
[0031] In another aspect the peptide comprises three cationic amino
acid residues.
[0032] In another aspect the peptide comprises two cationic amino
acid residues.
[0033] In another aspect the peptide comprises one cationic amino
acid residue.
[0034] In another aspect the peptide has no cationic amino acid
residues.
[0035] In another aspect the peptide is conjugated to said dsRNA
with a stable linker.
[0036] In another aspect the stable linker comprises a
homobifunctional crosslinker.
[0037] In another aspect the stable linker comprises a
hetero-bifunctional crosslinker In another aspect the peptide is
conjugated to said dsRNA with a cleavable linker.
[0038] In another aspect the cleavable linker comprises a disulfide
linker.
[0039] In another aspect the peptide is conjugated to said dsRNA
with a carbon linker.
[0040] In another aspect the carbon linker comprises no more than
eighteen carbons
[0041] In another aspect the carbon linker comprises 6 carbons.
[0042] In another aspect the peptide and said dsRNA are conjugated
without a linker.
[0043] In another aspect the peptide is conjugated to the 3' end of
the first strand of said dsRNA.
[0044] In another aspect the peptide is conjugated to the 3' end of
said second strand of said dsRNA.
[0045] In another aspect the peptide is conjugated to the 5' end of
the first strand of said dsRNA.
[0046] In another aspect the peptide is conjugated to the 5' end of
said second strand of said dsRNA.
[0047] In another aspect the peptide is conjugated to the 5' end of
the first strand and the 5' end of said second strand of said
dsRNA.
[0048] In another aspect the peptide is conjugated to the 5' end of
said first strand and said 3' end of said second strand of said
dsRNA.
[0049] In another aspect the peptide is conjugated to the 3' end of
the first strand and the 3' end of said second strand of said
dsRNA.
[0050] In another aspect the peptide is conjugated to the 3' end of
said first strand and said 5' end of said second strand of said
dsRNA.
[0051] In another aspect the at least one peptide is conjugated
internally to said first strand of said dsRNA.
[0052] In another aspect the at least one peptide is conjugated
internally to said second strand of said dsRNA.
[0053] In another aspect at least one peptide is conjugated
internally to said first strand and at least one peptide is
conjugated internally to said second strand of said dsRNA.
[0054] In another aspect the at least two peptides are conjugated
to said dsRNA.
[0055] In another aspect the at least two peptides are
identical.
[0056] In another aspect the at least two peptides are not
identical.
[0057] In another aspect the isolated composition further comprises
at least one dye molecule, and wherein said dye molecule is
conjugated to at least one of said dsRNA and said peptide.
[0058] In another aspect the dye molecule is polyaromatic.
[0059] In another aspect the dye is a fluorescent dye.
[0060] In another aspect the isolated composition further comprises
a therapeutic agent.
[0061] In another aspect the therapeutic agent is an anticancer
drug.
[0062] In another aspect the anticancer drug is selected from the
group consisting of paclitaxel, tamoxifen, cisplatin, doxorubicin
and vinblastine.
[0063] In another aspect the therapeutic agent is a drug to treat a
metabolic disease or disorder.
[0064] In another aspect the isolated composition further comprises
at least one targeting peptide.
[0065] In another aspect the peptide comprises a portion of a
translocation domain of a toxin.
[0066] In another aspect the neurotoxin is a clostridial
neurotoxin.
[0067] In another aspect wherein starting from the first nucleotide
(position 1) at the 3' terminus of the first oligonucleotide strand
of said dsRNA, position 1, 2 and/or 3 is/are substituted with a
modified nucleotide.
[0068] In another aspect the modified nucleotide is a
deoxyribonucleotide.
[0069] In another aspect one or both of the first and second
oligonucleotide strands comprises a 5' phosphate.
[0070] In another aspect the at least one nucleotide of said first
or second strand is modified.
[0071] In another aspect the modified nucleotide residues are
selected from the group consisting of 2'-O-methyl,
2'-methoxyethoxy, 2'-fluoro, 2'-allyl,
2'-O-[2-(methylamino)-2-oxoethyl], 4'-thio, 4'-CH2-O-2'-bridge,
4'-(CH2)2-O-2'-bridge, 2'-LNA, 2'-amino and
2'-O--(N-methylcarbamate).
[0072] In another aspect the dsRNA is cleaved endogenously in said
cell by Dicer.
[0073] In another aspect the amount of said isolated double
stranded nucleic acid sufficient to reduce expression of the target
gene is selected from the group consisting of 1 nanomolar or less,
200 picomolar or less, 100 picomolar or less, 50 picomolar or less,
20 picomolar or less and 10 picomolar or less in the environment of
said cell.
[0074] In another aspect the first and second strands are joined by
a chemical linker.
[0075] In another aspect the 3' terminus of said first strand and
said 5' terminus of said second strand are joined by a chemical
linker.
[0076] In another aspect a nucleotide of said second or first
strand is substituted with a modified nucleotide that directs the
orientation of Dicer cleavage.
[0077] In another aspect the isolated composition comprises a
modified nucleotide selected from the group consisting of a
deoxyribonucleotide, a dideoxyribonucleotide, an acyclonucleotide,
a 3'-deoxyadenosine (cordycepin), a 3'-azido-3'-deoxythymidine
(AZT), a 2',3'-dideoxyinosine (ddI), a
2',3'-dideoxy-3'-thiacytidine (3TC), a
2',3'-didehydro-2',3'-dideoxythymidine (d4T), a monophosphate
nucleotide of 3'-azido-3'-deoxythymidine (AZT), a
2',3'-dideoxy-3'-thiacytidine (3TC) and a monophosphate nucleotide
of 2',3'-didehydro-2',3'-dideoxythymidine (d4T), a 4-thiouracil, a
5-bromouracil, a 5-iodouracil, a 5-(3-aminoallyl)-uracil, a
2'-O-alkyl ribonucleotide, a 2'-O-methyl ribonucleotide, a 2'-amino
ribonucleotide, a 2'-fluoro ribonucleotide, and a locked nucleic
acid.
[0078] In another aspect the isolated composition comprises a
phosphate backbone modification selected from the group consisting
of a phosphonate, a phosphorothioate and a phosphotriester.
[0079] In another aspect the modified nucleotide residue of said 3'
terminus of said first strand is selected from the group consisting
of a deoxyribonucleotide, an acyclonucleotide and a fluorescent
molecule.
[0080] In another aspect the at least one of said nucleotides of
said first strand and at least one of said nucleotides of said
second strand form a mismatched base pair.
[0081] In another aspect the peptide has an amino acid sequence
selected from the group consisting of SEQ ID NO: 1-89.
[0082] In another embodiment the invention provides for a method
for reducing expression of a target gene in a cell, comprising:
contacting a cell with an isolated composition of the invention, in
an amount effective to reduce expression of a target gene in a cell
in comparison to a reference dsRNA.
[0083] In another embodiment, the invention provides for a method
for selectively inhibiting the growth of a cell comprising
contacting a cell with an amount of said an isolated composition of
the invention sufficient to inhibit the growth of the cell.
[0084] In another embodiment, the invention provides for a method
for reducing expression of a target gene in an animal, comprising:
treating an animal with an isolated composition of the invention,
in an amount effective to reduce expression of a target gene in a
cell of the animal in comparison to a reference dsRNA.
[0085] In one aspect the isolated composition possesses enhanced
pharmacokinetics when compared to an appropriate control dsRNA.
[0086] In another aspect the dsRNA possesses enhanced
pharmacodynamics when compared to an appropriate control dsRNA.
[0087] In another aspect the dsRNA possesses reduced toxicity when
compared to an appropriate control dsRNA.
[0088] In another aspect the dsRNA possesses enhanced intracellular
uptake when compared to an appropriate control dsRNA.
[0089] In another embodiment, the invention provides for a
pharmaceutical composition for reducing expression of a target gene
in a cell of a subject comprising an isolated composition of the
invention in an amount effective to reduce expression of a target
gene in a cell in comparison to a reference dsRNA and a
pharmaceutically acceptable carrier.
[0090] In another embodiment, the invention provides for a method
of synthesizing a dsRNA-peptide conjugate of the invention,
comprising chemically or enzymatically synthesizing said dsRNA.
[0091] In another embodiment, the invention provides for a kit
comprising a dsRNA-peptide conjugate of the invention and
instructions for its use.
BRIEF DESCRIPTION OF THE DRAWINGS
[0092] FIG. 1 (A-H) presents exemplary structures of dsRNA-peptide
conjugates useful according to the invention. "P"=a peptide
according to the invention (A-blunt-blunt), (B and
C-blunt-overhang), (D and E-asymmetric) and (F and G-mismatched
ends).
[0093] FIG. 2 shows exemplary sequences of HPRT1- and
KRAS-targeting dsRNAs of the invention. Underlined residues
indicate positions of 2'-O-methyl modifications. Arrows indicate
projected sites of dicer enzyme cleavage within the dsRNAs, while
dashed lines indicate the projected position of Argonaute2-mediated
cleavage within a corresponding target RNA sequence.
[0094] FIG. 3 shows exemplary peptide sequences of the
peptide-conjugated dsRNAs of the invention. Net charge of each
peptide is also listed.
[0095] FIG. 4 schematically depicts exemplary DsiRNA-peptide
conjugates of the invention, with size shifts of properly
conjugated molecules shown in lanes 2, 3 and 5 for respective
DsiRNA-peptide conjugates numbered 2, 3 and 5. Arrowheads in
schematics indicate projected dicer enzyme cleavage sites within
the DsiRNA and DsiRNA-peptide conjugates.
[0096] FIG. 5 schematically depicts additional exemplary
DsiRNA-peptide conjugates of the invention, with size shifts of
properly conjugated molecules shown in lanes 2, 3, 5 and 6 for
respective DsiRNA-peptide conjugates numbered 2, 3, 5 and 6.
Arrowheads in schematics indicate projected dicer enzyme cleavage
sites within the DsiRNA and DsiRNA-peptide conjugates.
[0097] FIG. 6 schematically depicts further exemplary
DsiRNA-peptide conjugates of the invention, with size shifts
indicating properly conjugated molecules shown in lanes 2 and 3 for
the DsiRNA-peptide conjugates numbered 2 and 3. Arrowheads in
schematics indicate projected dicer enzyme cleavage sites within
the DsiRNA and DsiRNA-peptide conjugates.
[0098] FIG. 7 schematically depicts exemplary DsiRNA-peptide
conjugates, including cleavable peptide conjugates, of the
invention, with size shifts of properly conjugated molecules shown
in lanes 2, 3, 4 and 5 for respective DsiRNA-peptide conjugates
numbered 2, 3, 4 and 5. Arrowheads in schematics indicate projected
dicer enzyme cleavage sites within the DsiRNA and DsiRNA-peptide
conjugates.
[0099] FIG. 8 schematically depicts an exemplary DsiRNA-cyclic
peptide conjugate of the invention, with a size shift indicating a
properly conjugated molecule shown in lane 2 for the DsiRNA-peptide
conjugate numbered 2. Arrowheads in schematics indicate projected
dicer enzyme cleavage sites within the DsiRNA and DsiRNA-peptide
conjugates.
[0100] FIGS. 9 and 10 schematically depict exemplary DsiRNA-peptide
conjugates of the invention, with each figure showing results of
Dicer processing assays for DsiRNA and DsiRNA-peptide
conjugates.
[0101] FIGS. 11 and 12 show histogram data demonstrating that
transfected DsiRNA-peptide conjugates were effective gene silencing
agents that retained potency in vitro. Transfection assays were
performed in HeLa cells.
[0102] FIGS. 13 and 14 demonstrate serum stability of exemplary
DsiRNA-peptide conjugates, with half-lives indicated.
[0103] FIGS. 15, 16 and 17 show histogram data demonstrating that
exemplary DsiRNA-peptide conjugates showed target gene silencing
efficacy in vitro in the absence of transfection vehicle, with
improved delivery observed with increasing DsiRNA-peptide conjugate
concentration. Assays were performed in HeLa cells.
[0104] FIG. 18 shows histogram data demonstrating that exemplary
DsiRNAs and DsiRNA-peptide conjugates knocked down target gene in
HepG2 cells in vitro, in the absence of transfection vehicle.
DsiRNA, DsiRNA-peptides and peptides were administered at 5 .mu.M
concentrations.
[0105] FIG. 19 shows IC.sub.50 curve data demonstrating that
exemplary DsiRNAs and DsiRNA-peptide conjugates knocked down target
gene in HepG2 cells in vitro, in the absence of transfection
vehicle. Schematics of tested agents are also shown.
DETAILED DESCRIPTION OF THE INVENTION
[0106] The present invention is directed to compositions that
contain double stranded RNA ("dsRNA") comprising a peptide capable
of enhancing the delivery and/or biodistribution or targeting of a
dsRNA to a target and adding further functionality and/or
enhancing, e.g. pharmacokinetics or pharmacodynamics of such agents
as compared to dsRNA molecules that do not comprise a peptide as
described herein. The present invention is also directed to methods
of preparing dsRNAs comprising a peptide that are capable of
reducing the level and/or expression of genes in vivo or in
vitro.
[0107] The invention provides for novel dsRNA peptide
conjugates.
[0108] The invention also provides for novel dsRNA-peptide
conjugates for targeting dsRNA to a specific tissue. The peptide
based targeting described herein occurs via highly specific binding
of the targeting peptide to a surface marker on a tissue or tumor
of interest. This specificity of peptide binding provides the
dsRNA-peptide conjugates of the invention with an increased ability
to target the dsRNA to a target in a highly specific, selective and
efficient manner that is advantageous to dsRNA targeting methods or
agents known in the art.
[0109] The invention provides the following advantages. The
invention provides for delivery peptides that enhance delivery of a
dsRNA of the invention. The invention provides for delivery
peptides that are close to neutral or are neutral. Nucleic acids
conjugated to cationic peptides, for example. TAT) (Tat.sup.48-60),
penetratin (Antp.sup.43-58, oligoarginine (R8, R9), etc.) are known
in the art. Unlike the peptides of the invention which are neutral
or close to neutral, cationic peptide conjugation is especially
disadvantageous for dsRNA conjugation due to the polyanionic nature
of nucleic acids.
[0110] The peptides of the invention are also advantageous over the
peptides known in the art because the peptides described herein, do
not need to be linked to the dsRNA via a cleavable linker but can
be conjugated to a dsRNA via a stable linker, since dicer enzyme
will process the dsRNA-peptides of the invention to produce the
siRNA molecule suitable for processing in the RISC pathway. This is
especially advantageous for pharmaceutical compositions due to
improved stability of stable linkers (cleavable linkers may cleave
during manufacturing and/or shelf storage thereby losing their
functionality).
DEFINITIONS
[0111] The invention provides improved compositions and methods for
reducing expression of a target gene in a cell, involving
contacting a target, with an isolated dsRNA in an amount effective
to reduce expression of a target gene in a cell. The dsRNA
molecules of the invention comprise a peptide, as defined herein to
provide a dsRNA-peptide conjugate. The peptide enhances the
delivery and/or biodistribution or targeting of a dsRNA to a target
RNA and add further functionality, e.g. pharmacokinetics or
pharmacodynamics as compared to dsRNA agents of corresponding
length that do not contain a pattern of modified nucleotides.
[0112] Unless defined otherwise, all technical and scientific terms
used herein have the meaning commonly understood by a person
skilled in the art to which this invention belongs. The following
references provide one of skill with a general definition of many
of the terms used in this invention: Singleton et al., Dictionary
of Microbiology and Molecular Biology (2nd ed. 1994); The Cambridge
Dictionary of Science and Technology (Walker ed., 1988); The
Glossary of Genetics, 5th Ed., R. Rieger et al. (eds.), Springer
Verlag (1991); and Hale & Marham, The Harper Collins Dictionary
of Biology (1991). As used herein, the following terms have the
meanings ascribed to them below, unless specified otherwise.
[0113] The present invention features one or more dsRNA molecules
conjugated to one or more peptides according to the invention and
methods of using these dsRNA molecules to modulate the levels of an
RNA or encoded protein of interest.
[0114] A dsRNA-peptide of the invention can be cleaved by dicer and
can inhibit expression of a target RNA.
[0115] A "peptide" as used herein includes a "delivery peptide" and
a "targeting peptide."
[0116] A "peptide" as used herein means a linear peptide, a
branched peptide or a cyclic peptide.
[0117] The present invention further relates to the use of a
peptide for transporting a dsRNA to a desired target, for example a
cell or a receptor on or internal to a cell, a desired target
tissue or a desired target cell.
[0118] In accordance with the present invention, the desired site
may be, for example and without limitation, the brain, the adrenal
or other sites outside the brain (e.g., an extracranial site) such
as for example, the kidney, the liver, the pancreas, the heart, the
spleen, the gastrointestinal (GI) tract (e.g., stomach, intestine,
colon), the eyes, the lungs, skin, adipose, muscle, lymph nodes,
bone marrow, the urinary and reproductive systems (ovary, breasts,
testis, prostrate), placenta, blood cells and combination thereof.
Therefore, the desired target site may be one or more site selected
from the group consisting of the brain, the adrenal or other sites
outside the brain (e.g., an extracranial site) such as for example,
the kidney, the liver, the pancreas, the heart, the spleen, the
gastrointestinal (GI) tract (e.g., stomach, intestine, colon), the
eyes, the lungs, skin, adipose, muscle, lymph nodes, bone marrow,
the urinary and reproductive systems (ovary, breasts, testis,
prostrate), placenta, blood cells and combination thereof.
[0119] A "target cell" means any cell as defined herein, for
example a cell derived from or present in any organ including but
not limited to the brain, the adrenal or other sites outside the
brain (e.g., an extracranial site) such as for example, the kidney,
the liver, the pancreas, the heart, the spleen, the
gastrointestinal (GI) tract (e.g., stomach, intestine, colon), the
eyes, the lungs, skin, adipose, muscle, lymph nodes, bone marrow,
the urinary and reproductive systems (ovary, breasts, testis,
prostrate), placenta, blood cells and a combination thereof.
[0120] As used herein, a "delivery peptide" means a peptide that is
neutral or essentially neutral. "Essentially neutral" means having
a net charge of +5 or less, for example, +5, +4, +3, +2, +1 or
zero.
[0121] A "net charge" according to the invention is determined
according to methods known in the art. For example, the net charge
as defined herein is determined by obtaining the net charge of the
total number of cationic amino acids (lysine, arginine, histidine)
and the total number of anionic amino acids (aspartic acid and
glutamic acid.)
[0122] As used herein, "delivery peptide" means at least 6 amino
acids wherein the peptide has a net charge of about +5 or less (for
example, +5, +4, +3, +2, +1 or zero). In one aspect, a peptide is
6-100 amino acids, for example, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35,
40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100, and has a
net charge of about +5 or less. In another embodiment, a peptide is
10-50 amino acids (for example, 10, 15, 20, 25, 30, 35, 40, 45 or
50 amino acids) and has a net charge of about +5 or less. In
another embodiment, a peptide is 15-30 amino acids (for example,
15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30
amino acids) and has a net charge of about +5 or less.
[0123] A "delivery peptide" according to the invention includes a
peptide that is at least 6 amino acids and is a neutral peptide. In
one aspect, a peptide is 6-100 amino acids, for example, 6, 7, 8,
9, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85,
90, 95 or 100, and has no net charge. In another embodiment, a
peptide is 10-50 amino acids (for example, 10, 11, 12, 13, 14, 15,
20, 25, 30, 35, 40, 45 or 50 amino acids) and has no net charge. In
another embodiment, a peptide is 15-30 amino acids (for example,
15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30
amino acids) and has no net charge.
[0124] A "delivery peptide" according to the invention also means a
peptide that is at least 6 and no more than 19 amino acids, wherein
the peptide has a net charge of about +5 or less (for example, +5,
+4, +3, +2, +1, or zero).
[0125] As used herein, "delivery peptide" means at least 6 amino
acids wherein the peptide has a net charge of about +5 or less (for
example, +5, +4, +3, +2, +1 or zero) and wherein the peptide has at
least one anionic amino acid. In one aspect, a peptide is 6-100
amino acids, for example, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35, 40,
45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100, and has a net
charge of about +4 or less. In another embodiment, a peptide is
10-50 amino acids (for example, 10, 15, 20, 25, 30, 35, 40, 45 or
50 amino acids) and has a net charge of about +5 or less. In
another embodiment, a peptide is 15-30 amino acids (for example,
15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30
amino acids) and has a net charge of about +5 or less.
[0126] As used herein, "at least one anionic amino acid" means at
least one of glutamic acid (E) or aspartic acid (D). For example,
XXXEXX or XXXDXX or XXDXEXX or XXXEDXX wherein X is any amino acid,
wherein the peptide has a net charge of +5 or less.
[0127] A peptide that has no net charge means a "neutral
peptide."
[0128] As used herein, a "neutral peptide" has a net charge that is
approximately zero at neutral pH (for example pH 6, 6.1, 6.2, 6.3,
6.4, 6.5, 6.6, 6.7, 6.8, 6.9, 7, 7.1, 7.2, 7.3, 7.4, 7.5, 7.6, 7.7,
7.8, 7.9, 8, 8.1, 8.2, 8.3, 8.4 or 8.5).
[0129] A "neutral peptide" also includes a peptide that has a net
charge that is approximately zero at neutral pH and/or has an
isoelectric point (pI) of about pH 7 (for example pH 6. 6.1, 6.2,
6.3, 6.4, 6.5, 6.6, 6.7, 6.8, 6.9, 7, 7.1, 7.2, 7.3, 7.4, 7.5, 7.6,
7.7, 7.8, 7.9, 8, 8.1, 8.2, 8.3, 8.4 or 8.5).
[0130] Positively charged amino acids are Lysine (Lys, K), Arginine
(Arg, R) and Histidine (His, H). Negatively charged amino acids are
Aspartic acid or aspartate (Asp, D), Glutamic acid or glutamate
(Glu, E). (Reference: Lehninger Principles of Biochemistry,
3.sup.rd Ed., 2000. Edited by David L. Nelson and Michael M. Cox,
Worth Publishers, New York, N.Y.)
[0131] A "delivery peptide" according to the invention is an amino
acid sequence that can deliver a dsRNA to the appropriate target
RNA when conjugated to a dsRNA of the invention.
[0132] A "delivery peptide" also means an amino acid sequence that
can transport a dsRNA across a cell membrane when the dsRNA is
conjugated to the peptide.
[0133] A "delivery peptide" that is useful according to the
invention increases the internalization of a dsRNA to a target cell
when the peptide is conjugated to the dsRNA, as compared to a dsRNA
that is not conjugated to a peptide.
[0134] A "delivery peptide" that is useful according to the
invention increases the delivery of a dsRNA to a target RNA when
the peptide is conjugated to the dsRNA, as compared to a dsRNA that
is not conjugated to a peptide.
[0135] As used herein, "increases" means delivery of a
peptide-dsRNA to a target RNA is 1, 2, 3, 4, 5, 10, 15, 20, 25, 40,
35, 40, 45, 50, 100, 1000 or 10,000-fold or more greater than
delivery of a dsRNA that is not conjugated to a peptide.
[0136] As used herein, "increases" means delivery of a
peptide-dsRNA conjugate to a target is 1, 5, 10, 15, 20, 25, 30,
35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99 or 100%
greater than delivery of a dsRNA that is not conjugated to a
peptide.
[0137] "Delivery" of a dsRNA, a peptide or a dsRNA-peptide
conjugate is assessed by internalization or uptake assays described
hereinbelow.
[0138] In another embodiment a "peptide" as used herein means a
"targeting peptide" that is 6-100 amino acids, for example, 6, 7,
8, 9, 10, 15, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80,
85, 90, 95 or 100, and that binds to a target cell.
[0139] A "targeting peptide" according to the invention binds
specifically to a target or a binding site when conjugated to a
dsRNA as defined herein.
[0140] As used herein, "specifically binds" means via hydrogen
bonding or electrostatic attraction to a receptor of interest.
[0141] In one aspect, the target is a receptor or a receptor
binding protein.
[0142] In one aspect, the target or binding site or receptor is on
the surface of a cell.
[0143] In another aspect, the target or binding site or receptor is
internal, for example, in a cell, (for example in the cytoplasm, in
the nucleus or on the surface of the nucleus.)
[0144] In another aspect, the target or binding site or receptor is
naked in solution.
[0145] "Specific binding" is determined by a binding assay known in
the art and as defined herein (See for example US20080064092 and
US2009004174). In one embodiment, specific binding is determined by
comparing the binding of a dsRNA-delivery peptide to the stated,
corresponding receptor to the binding of the dsRNA-peptide to other
receptors, wherein all receptors are present in a mixture. An
increase, as defined herein, in binding to the stated receptor, as
compared to other receptors, is indicative of specific binding.
[0146] In one embodiment, specific binding is determined by
comparing the binding of a dsRNA-delivery peptide to the stated
cell to the binding of the dsRNA-peptide to other cells, wherein
all cells are present in a mixture. An increase, as defined herein,
in binding to the stated cell, as compared to other cells, is
indicative of specific binding.
[0147] "Specific binding" is determined in vitro by determining the
binding of a dsRNA-peptide to a naked receptor in solution or in
vivo by determining the binding of a dsRNA-peptide to a cell.
[0148] As used herein, a "receptor" includes cell surface
receptors, naked receptors in solution and receptors that are
internal to a cell, for example in the cytoplasm, the nucleus or on
the surface of the nucleus.
[0149] As used herein, a "receptor binding protein means
[0150] A "targeting peptide" as used herein, can do at least one of
cross a cell membrane when conjugated to a dsRNA, transport a dsRNA
across a cell membrane when conjugated to a dsRNA according to the
invention and bind a receptor for the ligand, for example a cell
surface receptor, when conjugated to a dsRNA.
[0151] In one aspect, a "targeting peptide" is conjugated to a
translocation domain or a portion thereof, for example a
translocation domain of a neurotoxin.
[0152] As used herein, a translocation domain refers to an amino
acid sequence that facilitates penetration and/or internalization
of a protein.
[0153] As used herein, a portion thereof means an amino acid
sequence that is sufficient to maintain function, for example
directing cell entry or facilitating cell surface binding, for
example cell surface receptor binding, as defined herein. A
"portion thereof" also means 1% or more, for example, 1, 5, 10, 20,
25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 99%
of the complete amino acid sequence.
[0154] In one aspect, the targeting peptide is capable of
internalization (e.g. by direct penetration or by and endocytic
pathway that requires endosome formation and is also referred to as
receptor-mediated endocytosis.)
[0155] "Binding" of a dsRNA, a peptide or a dsRNA-peptide conjugate
is assessed by a ligand binding assay.
[0156] In one embodiment the binding affinity of the peptide or
dsRNA-peptide conjugate for the corresponding receptor is about 100
nM. In another embodiment the binding affinity of the peptide or
dsRNA-peptide conjugate for the corresponding receptor is about 1
nM. In another embodiment the binding affinity of the peptide or
dsRNA-peptide conjugates for the corresponding receptor is about
100 nM. In another embodiment the binding affinity of the peptide
or dsRNA-peptide conjugate for the corresponding receptor is about
10 nM. In another embodiment the binding affinity of the peptide or
dsRNA-peptide conjugate for the corresponding receptor is about 5
nM. In another embodiment the binding affinity of the peptide or
dsRNA-peptide conjugate for the corresponding receptor is about 1
nM. In another embodiment the binding affinity of the peptide or
dsRNA-peptide conjugate for the corresponding receptor is about 0.1
nM or less (Gauguin et al., J Biol. Chem. 2008; 283:2604-2613;
Grupping et al., Endocrinology 1997; 138(10):4064-4068; and Stone,
Chervin and Kranz, Immunology. 2009; 126(2):165-76.)
[0157] In one embodiment, a "targeting peptide" means 6-100 amino
acids, for example, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35, 40, 45, 50,
55, 60, 65, 70, 75, 80, 85, 90, 95 or 100 amino acids, that bind to
a target cell and that comprises at least a portion of an amino
acid sequence of interest, for example, the amino acid sequence of
a target peptide.
[0158] A peptide that is useful according to the invention
increases the targeting of a dsRNA to a cell when the peptide is
conjugated to the dsRNA as compared to a dsRNA that is not
conjugated to a peptide.
[0159] As used herein, "increases" means targeting of a
peptide-dsRNA conjugate to a cell is 1, 2, 3, 4, 5, 10, 15, 20, 25,
40, 35, 40, 45, 50, 100, 1000 or 10,000-fold or more greater than
targeting of a dsRNA that is not conjugated to a peptide.
[0160] As used herein, "increases" means targeting of a
peptide-dsRNA conjugate to a cell is 1, 5, 10, 15, 20, 25, 30, 35,
40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99 or 100% greater
than targeting of a dsRNA that is not conjugated to a peptide.`
[0161] As used herein, "increases" means targeting, as defined
hereinbelow, of a peptide-dsRNA conjugate to a cell requires less
dsRNA (a lower dose of dsRNA) as compared to the amount or dose of
an identical dsRNA that is not conjugated to a peptide and that is
required to achieve an equivalent level of binding, association or
internalization, as determined by the IC.sub.50s in the assays
described hereinbelow. For example, the IC.sub.50 for a
dsRNA-peptide conjugate that is required to achieve a 50% reduction
in RNA/gene expression is decreased as compared to the IC.sub.50
for an identical dsRNA that is not conjugated to a peptide, as
measured in vivo or in vitro (see for example Hefner et al. J
Biomol Tech. 2008 September: 19(4) 231-237; Zimmermann et al.
Nature. 2006 May 4: 441(7089):111-114; Durcan et al. Mol. Pharm.
2008 July-August; 5(4):559-566; Heidel et al. Proc Natl Acad Sci
USA. 2007 Apr. 3: 104(14):5715-5721).
[0162] As used herein, "decreased" means that the IC.sub.50 for a
dsRNA-peptide conjugate is 1, 2, 3, 4, 5, 10, 15, 20, 25, 40, 35,
40, 45, 50, 100, 1000 or 10,000-fold or more less than the
IC.sub.50 for an identical dsRNA that is not conjugated to a
peptide.
[0163] As used herein, "decreased" means that the IC.sub.50 for a
dsRNA-peptide conjugate is 1, 5, 10, 15, 20, 25, 30, 35, 40, 45,
50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99 or 100% less than the
IC.sub.50 for an identical dsRNA that is not conjugated to a
peptide.
[0164] In one embodiment increased targeting of a dsRNA-peptide
conjugate as compared to dsRNA alone as expressed by a binding
coefficient, K.sub.d, is about 25%. In another embodiment the
increased targeting of a dsRNA-peptide conjugate as compared to a
dsRNA alone is about 100%, i.e., the dsRNA-peptide conjugate
exhibits about a 2-fold increase in binding affinity (i.e.,
decreased K.sub.d) compared to dsRNA alone. In another embodiment
the dsRNA-peptide conjugate exhibits about a 5-fold increase in
binding affinity compared to dsRNA alone. In another embodiment the
dsRNA-peptide conjugate exhibits about a 10-fold increase in
binding affinity compared to dsiRNA alone. In another embodiment
the dsRNA-peptide conjugate exhibits about a 100-fold increase in
binding affinity compared to dsRNA alone. In another embodiment the
dsRNA-peptide conjugate exhibits about a 1,000-fold or more
increase in binding affinity compared to dsRNA alone.
[0165] "Binding" is determined by a binding assay known in the art
and as defined herein. In one embodiment, binding is determined by
determining the binding of a dsRNA-delivery peptide to the stated
receptor.
[0166] In another embodiment, binding is determined by determining
the binding of a dsRNA-delivery peptide to the stated cell wherein
all cells are present in a mixture.
[0167] "Binding" is determined in vitro by determining the binding
of a dsRNA-peptide to a naked receptor in solution or in vivo by
determining the binding of a dsRNA-peptide to a cell.
[0168] As used herein, "targeting" means preferential or specific
binding or association or internalization of a dsRNA peptide
conjugate to a receptor of interest, as compared to another
receptor in a mixture of receptors. As used herein "targeting"
encompasses preferential or specific binding or association or
internalization of a dsRNA peptide conjugate to a receptor of
interest on a cell, as compared to another receptor on a cell, in a
mixture of cells. As used herein "targeting" encompasses
preferential or specific binding or association or internalization
of a dsRNA peptide conjugate to a cell, as compared to another
cell, in a mixture of cells. That is, "targeting" according to the
invention, is determined or measured both in vitro and in vivo.
[0169] "Targeting" also means transport or delivery of a "peptide"
of the invention to the appropriate binding site on a cell, for
example, if the peptide is a ligand, targeting means delivery of
the peptide to the appropriate receptor, binding or adhesion
protein for the ligand.
[0170] A peptide according to the invention can be attached to the
5' or 3' end of the first strand or the 5' or 3' end of the second
strand or to the 5' end of the first strand and the 5' end of the
second strand, to the 5' end of the first strand and the 3' end of
the second strand, to the 3' end of the first strand and the 5' end
of the second strand or to the 3' end of the first strand and the
3' end of the second strand of a dsRNA of the invention.
[0171] A peptide according to the invention can also be attached
internally, for example via a specific functional group on the
amino acid residue (e.g., --SH group on Cys or amino group of Lys),
to the first and/or second strand.
[0172] In one aspect, more than one peptide, for example a dimer, a
trimer or a multitude or peptides are attached to a dsRNA.
[0173] As used herein, a "dimer" means two peptides that are
conjugated to each other and wherein one of the two peptides is
also conjugated to a dsRNA. A dimer also means two peptides wherein
each peptide is conjugated to a unique site on a dsRNA.
[0174] As used herein, a "trimer" means three peptides that are
conjugated to each other and wherein one of the three peptides is
conjugated to a dsRNA. A trimer also means three peptides wherein
each peptide is conjugated to a unique site on a dsRNA. A trimer
also means three peptides wherein two of the three peptides are
conjugated to each other and wherein one of the two peptides is
also conjugated to a dsRNA and a third peptide is conjugated to a
unique site on a dsRNA.
[0175] As used herein, a "multitude" means more than 1 peptide, for
example 2, 3, 4, 5, 6, 7, 8, 9, 10 or more. The invention provides
for a dsRNA that is conjugated to multiple peptides wherein the
peptides are of the same or different sequences. In one embodiment,
a multitude of peptides means one or more delivery peptide and one
or more targeting peptide.
[0176] The term "peptide" embraces a limited number of contiguous
amino acids that are peptide bonded together and comprises a
targeting or delivery peptide as defined herein, whether the
peptide is a naturally occurring molecule or synthetic. (i.e. a
naturally occurring molecule, or a chemically/physically modified
variant thereof) that is capable of delivering a dsRNA and/or
binding to a peptide target, for example, a cell or a receptor on a
cell.
[0177] A "peptide" as used herein can originate from a naturally
occurring protein.
[0178] A "peptide" as used herein can comprise different protein
domains (for example a chimeric peptide).
[0179] A "peptide" as used herein can be a synthetic peptide that
is designed based on a structure-function relationship for a
particular amino acid sequence and does not necessarily have
homology to a natural sequence.
[0180] A peptide of the invention is conjugated to a dsRNA of the
invention.
[0181] As used herein, conjugated means attached via any covalent
or non-covalent association known in the art.
[0182] A peptide of the invention can be conjugated to a dsRNA of
the invention via any amino acid residue in the peptide, e.g., the
C-terminal amino acid of the C-terminus via the carboxyl group of
the C-terminal amino acid or the N-terminal amino acid of the
N-terminus via the .alpha.-amino group of the N-terminal amino acid
or to a specific functional group on the amino acid residue (e.g.,
--SH group on Cys or amino group of Lys).
[0183] A peptide of the invention can be conjugated to a dsRNA of
the invention via any amino acid residue internal in the peptide
sequence, e.g., via the amino group of Lysine residues in the
middle of the peptide sequence.
[0184] A peptide according to the invention can be conjugated to a
dsRNA of the invention via a stable covalent linkage including but
not limited to a zero-length linker, homobifunctional linker,
heterobifunctional linker or a trifunctional linker (References:
Bioconjugate Techniques, 1996. Greg T. Hermanson, Academic Press,
San Diego, Calif.; Chemistry of Protein Conjugation and
Cross-linking, 1991. Shan S. Wong, CRC Press, Boca Raton,
Fla.).
[0185] As used herein, a "zero-length linker" means conjugation via
a reaction where the reactants (e.g., the reactive groups on the
dsRNAs and the functional groups on the peptides, such as reactive
groups on the amino acid side chains, free amino and carboxyl
groups of the terminal amino acid residues, etc.) are condensed to
form a conjugated molecule without a linker. A "zero-length linker"
is formed, for example, by reacting a terminal reactant of a
peptide with the terminal reactant of a dsRNA. Examples of
zero-length linking includes but are not limited to disulfides,
amides, esters, thioesters, etc.
[0186] As used herein, a "homobifunctional linker" means
conjugation with a linker having two similar functional groups.
Examples of homobifunctional linkers include but are not limited to
amino directed, carboxyl directed, sulfhydryl directed, etc.
[0187] As used herein, a "heterobifunctional linker" means
conjugation with a linker having two dissimilar functional groups
of different specificities. Examples of heterobifunctional linkers
include but are not limited to combinations of amino and sulfhydryl
directed, amino and carboxyl directed, carboxyl and sulfhydryl
directed, etc.
[0188] As used herein, a "trifunctional linker" means conjugation
with a linker having three reactive functional groups. Examples of
trifunctional linkers include but are not limited to
4-azido-2-nitrophenylbiocytin-4-nitrophenyl ester (ABNP),
sulfosuccinimidyl-2-[6-(biotinamido)-2-(p-azidobenzamido)hexanoamido]ethy-
l-1,3'-dithiopropionate (sulfo-SBED), other biocytin based
molecules, etc.
[0189] A peptide according to the invention can also be conjugated
to a dsRNA via a cleavable linker including but not limited to a
disulfide, an ester, a glycol, a diazo, and a sulfone linker.
[0190] A peptide according to the invention can be conjugated to a
dsRNA by a carbon linker, for example a carbon linker that is 1 or
more carbons, for example, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 or more
carbons.
[0191] A peptide according to the invention can be conjugated to a
dsRNA using a prosthetic group. Prosthetic groups include but are
not limited to metal ions, porphyrin groups, coenzymes and other
nonpeptidyl moieties, e.g., carbohydrates or oligosaccharides
(Wong, S. S. (1991), Chemistry of protein conjugation and
cross-linking, CRC Press).
[0192] In one embodiment, a peptide and a dsRNA are conjugated by
expression as a fusion construct.
[0193] A "peptide" may be attached to a dsRNA by any conventional
chemical conjugation techniques, which are well known to a skilled
person. In this regard, reference is made to Hermanson, G. T.
(1996), Bioconjugate techniques, Academic Press, and to Wong, S. S.
(1991), Chemistry of protein conjugation and cross-linking, CRC
Press.
[0194] A "peptide" may be conjugated to a dsRNA non-covalently via
ionic interactions.
[0195] As used herein, a peptide-dsRNA conjugate" means a peptide
that is conjugated to a dsRNA by a method including but not limited
to the methods of attachment/conjugation described herein.
[0196] In one aspect a peptide-dsRNA conjugate further comprises
one or more dye molecules.
[0197] As used herein, a "dye molecule" includes but is not limited
to a polyaromatic dye or a fluorescent dye, for example Cy3, Cy5,
Cy5.5, Alexa Fluor.RTM. (e.g, Alexa Fluor 488, Alexa Fluor 555,
Alexa Fluor 647, etc.)
[0198] In one aspect, a peptide-dsRNA conjugate further comprises a
delivery peptide, as defined herein.
[0199] In one aspect, a peptide-dsRNA conjugate further comprises a
therapeutic agent, for example, an anticancer agent or an agent
that treats a metabolic disease or disorder. Anticancer agents
include but are not limited to antiviral agents (Fiume et al. FEBS
Lett. 1983; 153(1):6-10), cisplatin (Mukhopadhyay S et al.,
Bioconjug Chem. 2008; 19(1):39-49), doxorubicin (Guan H et al.,
Bioconjug Chem. 2008; 19(9):1813-21), paclitaxel (Dubikovskaya E A
et al., Proc Natl Acad Sci USA. 2008; 105(34):12128-33, Regina A et
al., Br J. Pharmacol. 2008; 155(2):185-97), tamoxifen (Rickert et
al. Biomacromolecules. 2007; 8(11):3608-3612) and vinblastine
(DeFeo-Jones D et al., Mol Cancer Ther. 2002; 1(7):451-459).
[0200] A "peptide-dsRNA conjugate" refers to a molecule wherein
both of said peptide and said dsRNA retain their function.
[0201] As used herein, "decreased" for example, a decrease in the
onset of action of a dsRNA-peptide conjugate, or a decrease in the
speed of delivery of a dsRNA-peptide conjugate, means 1, 2, 3, 4,
5, 10, 15, 20, 25, 40, 35, 40, 45, 50, 100, 1000 or 10,000-fold or
more less than the onset of action or speed of delivery of an
identical dsRNA that is not conjugated to a peptide.
[0202] As used herein, "decreased" for example, a decrease in the
onset of action of a dsRNA-peptide conjugate, or a decrease in the
speed of delivery of a dsRNA-peptide conjugate, means 1, 5, 10, 15,
20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 99
or 100% less than an the onset of action or speed of delivery of
identical dsRNA that is not conjugated to a peptide.
[0203] As used herein, "onset of action" means the time period
between the administration of a dsRNA in vitro (for example to a
cell or to tissue culture medium) or in vivo (for example to a
human or animal (e.g. mouse or rat) subject) and the arrival of the
dsRNA at the target RNA.
[0204] As used herein, "speed of delivery" means the time required
for a dsRNA to reach a target RNA following administration of a
dsRNA.
[0205] As used herein, "duration of action" means the time period
during which dsRNA inhibits expression of a target RNA.
[0206] As used herein, a "control" or a "reference", for example a
control dsRNA, means a dsRNA that is comparable in length to the
dsRNA that is specific for a particular target RNA (the test
dsRNA), but that is not specific for a particular target RNA. A
control RNA has a nucleotide sequence that is not identical to the
dsRNA that is specific for a target of interest. A control, for
example a control peptide means a peptide that is comparable in one
or more of length and charge but has an amino acid sequence that is
different from the amino acid sequence of the peptide that is
conjugated to a dsRNA that is specific for a target RNA (the test
peptide). A control, for example a control dsRNA-peptide conjugate
means a dsRNA-peptide conjugate wherein the dsRNA is comparable in
length to the dsRNA that is specific for a particular target RNA,
but is not specific for a particular target RNA. A control
dsRNA-peptide conjugate also means a dsRNA-peptide conjugate
wherein the peptide is comparable in one or more of length and
charge but has an amino acid sequence that is different from the
amino acid sequence of the peptide that is conjugated to a dsRNA
that is specific for a target RNA. A control dsRNA-peptide
conjugate also means a dsRNA-peptide conjugate wherein the peptide
is comparable in one or more of length and charge but has an amino
acid sequence that is different from the amino acid sequence of the
peptide that is conjugated to a dsRNA that is specific for a target
RNA and wherein the dsRNA is comparable in length to the dsRNA that
is specific for a particular target RNA, but that is not specific
for a particular target RNA.
[0207] As used herein, a test peptide or a test dsRNA means a
peptide or dsRNA that comprises a conjugate that decreases the
expression of a target RNA according to the invention. A test dsRNA
means a dsRNA that decreases the expression of a target RNA
according to the invention. A "test" dsRNA-peptide conjugate
comprises a test dsRNA conjugated to a test peptide.
[0208] As used herein, the term "nucleic acid" refers to
deoxyribonucleotides, ribonucleotides, or modified nucleotides, and
polymers thereof in single- or double-stranded form. The term
encompasses nucleic acids containing known nucleotide analogs or
modified backbone residues or linkages, which are synthetic,
naturally occurring, and non-naturally occurring, which have
similar binding properties as the reference nucleic acid, and which
are metabolized in a manner similar to the reference nucleotides.
Examples of such analogs include, without limitation,
phosphorothioates, phosphoramidates, methyl phosphonates,
chiral-methyl phosphonates, 2-O-methyl ribonucleotides,
peptide-nucleic acids (PNAs).
[0209] As used herein, "nucleotide" is used as recognized in the
art to include those with natural bases (standard), and modified
bases well known in the art. Such bases are generally located at
the 1' position of a nucleotide sugar moiety. Nucleotides generally
comprise a base, sugar and a phosphate group. The nucleotides can
be unmodified or modified at the sugar, phosphate and/or base
moiety, (also referred to interchangeably as nucleotide analogs,
modified nucleotides, non-natural nucleotides, non-standard
nucleotides and other; see, e.g., Usman and McSwiggen, supra;
Eckstein, et al., International PCT Publication No. WO 92/07065;
Usman et al, International PCT Publication No. WO 93/15187; Uhlman
& Peyman, supra, all are hereby incorporated by reference
herein). There are several examples of modified nucleic acid bases
known in the art as summarized by Limbach, et al, Nucleic Acids
Res. 22:2183, 1994. Some of the non-limiting examples of base
modifications that can be introduced into nucleic acid molecules
include, hypoxanthine, purine, pyridin-4-one, pyridin-2-one,
phenyl, pseudouracil, 2,4,6-trimethoxy benzene, 3-methyl uracil,
dihydrouridine, naphthyl, aminophenyl, 5-alkylcytidines (e.g.,
5-methylcytidine), 5-alkyluridines (e.g., ribothymidine),
5-halouridine (e.g., 5-bromouridine) or 6-azapyrimidines or
6-alkylpyrimidines (e.g. 6-methyluridine), propyne, and others
(Burgin, et al., Biochemistry 35:14090, 1996; Uhlman & Peyman,
supra). By "modified bases" in this aspect is meant nucleotide
bases other than adenine, guanine, cytosine and uracil at 1'
position or their equivalents.
[0210] As used herein, "modified nucleotide" refers to a nucleotide
that has one or more modifications to the nucleoside, the
nucleobase, pentose ring, or phosphate group. For example, modified
nucleotides exclude ribonucleotides containing adenosine
monophosphate, guanosine monophosphate, uridine monophosphate, and
cytidine monophosphate and deoxyribonucleotides containing
deoxyadenosine monophosphate, deoxyguanosine monophosphate,
deoxythymidine monophosphate, and deoxycytidine monophosphate.
Modifications include those naturally occurring that result from
modification by enzymes that modify nucleotides, such as
methyltransferases. Modified nucleotides also include synthetic or
non-naturally occurring nucleotides. Synthetic or non-naturally
occurring modifications in nucleotides include those with 2'
modifications, e.g., 2'-O-methyl, 2'-methoxyethoxy, 2'-fluoro,
2'-allyl, 2'-O-[2-(methylamino)-2-oxoethyl], 4'-thio,
4'-CH.sub.2--O-2'-bridge, 4'-(CH.sub.2).sub.2--O-2'-bridge, 2'-LNA,
and 2'-O--(N-methylcarbamate) or those comprising base analogs. In
connection with 2'-modified nucleotides as described for the
present disclosure, by "amino" is meant 2'-NH.sub.2 or
2'-O--NH.sub.2, which can be modified or unmodified. Such modified
groups are described, e.g., in Eckstein et al., U.S. Pat. No.
5,672,695 and Matulic-Adamic et al., U.S. Pat. No. 6,248,878.
[0211] In reference to the nucleic acid molecules of the present
disclosure, modifications may exist upon these agents in patterns
on one or both strands of the dsRNA). As used herein, "alternating
positions" refers to a pattern where every other nucleotide is a
modified nucleotide or there is an unmodified nucleotide (e.g., an
unmodified ribonucleotide) between every modified nucleotide over a
defined length of a strand of the dsRNA (e.g., 5'-MNMNMN-3';
3'-MNMNMN-5'; where M is a modified nucleotide and N is an
unmodified nucleotide). In certain embodiments, the modification
pattern starts from the first nucleotide position at either the 5'
or 3' terminus according to any of the position numbering
conventions described herein (in certain embodiments, position 1 is
designated in reference to the terminal residue of a strand
following a projected Dicer cleavage event of a DsiRNA agent of the
invention; thus, position 1 does not always constitute a 3'
terminal or 5' terminal residue of a pre-processed agent of the
invention). In other embodiments, position 1 is designated in
reference to the nucleotide residue of a first or second strand
that is complementary to the 5' or 3' end of the opposite strand.
For example, in certain embodiments, position 1 is the nucleotide
residue of the second strand that is complementary to the 5'
terminal nucleotide residue of the first oligonucleotide strand.
The invention encompasses dsRNAs wherein the modification pattern
starts at any one of positions 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11,
12, 13, 14, 15, 16, 12, 18, 19, 20, 21, 22, 23 or 24 from the 5' or
3' terminus according to any of the position numbering conventions
described herein. The invention also encompasses dsRNAs wherein the
modification patterns starts at any position that is at least one
nucleotide from the 5' or 3' terminal residue.
[0212] The pattern of modified nucleotides at alternating positions
may run the full length of the strand, but in certain embodiments
includes at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 15,
16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28 or more
nucleotides containing at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24 or more modified
nucleotides, respectively.
[0213] As used herein, "alternating pairs of positions" refers to a
pattern where two consecutive modified nucleotides are separated by
two consecutive unmodified nucleotides over a defined length of a
strand of the dsRNA (e.g., 5'-MMNNMMNNMMNN-3'; 3'-MMNNMMNNMMNN-5';
where M is a modified nucleotide and N is an unmodified
nucleotide). In one embodiment, the modification pattern starts
from the first nucleotide position at either the 5' or 3' terminus
according to any of the position numbering conventions described
herein. The pattern of modified nucleotides at alternating
positions may run the full length of the strand, but preferably
includes at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 15,
16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28 nucleotides
containing at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15,
16, 17, 18, 19, 20, 21, 22, 23, 24 modified nucleotides,
respectively. It is emphasized that the above modification patterns
are exemplary and are not intended as limitations on the scope of
the invention.
[0214] As used herein, "base analog" refers to a heterocyclic
moiety which is located at the 1' position of a nucleotide sugar
moiety in a modified nucleotide that can be incorporated into a
nucleic acid duplex (or the equivalent position in a nucleotide
sugar moiety substitution that can be incorporated into a nucleic
acid duplex). In the dsNAs of the invention, a base analog is
generally either a purine or pyrimidine base excluding the common
bases guanine (G), cytosine (C), adenine (A), thymine (T), and
uracil (U). Base analogs can duplex with other bases or base
analogs in dsRNAs. Base analogs include those useful in the
compounds and methods of the invention, e.g., those disclosed in
U.S. Pat. Nos. 5,432,272 and 6,001,983 to Benner and US Patent
Publication No. 20080213891 to Manoharan, which are herein
incorporated by reference. Non-limiting examples of bases include
hypoxanthine (I), xanthine (X),
313-D-ribofuranosyl-(2,6-diaminopyrimidine) (K),
3-.beta.-D-ribofuranosyl-(1-methyl-pyrazolo[4,3-d]pyrimidine-5,7(4H,6H)-d-
ione) (P), iso-cytosine (iso-C), iso-guanine (iso-G),
1-.beta.-D-ribofuranosyl-(5-nitroindole),
1-.beta.-D-ribofuranosyl-(3-nitropyrrole), 5-bromouracil,
2-aminopurine, 4-thio-dT, 7-(2-thienyl)-imidazo[4,5-b]pyridine (Ds)
and pyrrole-2-carbaldehyde (Pa), 2-amino-6-(2-thienyl)purine (S),
2-oxopyridine (Y), difluorotolyl, 4-fluoro-6-methylbenzimidazole,
4-methylbenzimidazole, 3-methyl isocarbostyrilyl, 5-methyl
isocarbostyrilyl, and 3-methyl-7-propynyl isocarbostyrilyl,
7-azaindolyl, 6-methyl-7-azaindolyl, imidizopyridinyl,
9-methyl-imidizopyridinyl, pyrrolopyrizinyl, isocarbostyrilyl,
7-propynyl isocarbostyrilyl, propynyl-7-azaindolyl,
2,4,5-trimethylphenyl, 4-methylindolyl, 4,6-dimethylindolyl,
phenyl, napthalenyl, anthracenyl, phenanthracenyl, pyrenyl,
stilbenzyl, tetracenyl, pentacenyl, and structural derivates
thereof (Schweitzer et al., J. Org. Chem., 59:7238-7242 (1994);
Berger et al., Nucleic Acids Research, 28(15):2911-2914 (2000);
Moran et al., J. Am. Chem. Soc., 119:2056-2057 (1997); Morales et
al., J. Am. Chem. Soc., 121:2323-2324 (1999); Guckian et al., J.
Am. Chem. Soc., 118:8182-8183 (1996); Morales et al., J. Am. Chem.
Soc., 122(6):1001-1007 (2000); McMinn et al., J. Am. Chem. Soc.,
121:11585-11586 (1999); Guckian et al., J. Org. Chem., 63:9652-9656
(1998); Moran et al., Proc. Natl. Acad. Sci., 94:10506-10511
(1997); Das et al., J. Chem. Soc., Perkin Trans., 1:197-206 (2002);
Shibata et al., J. Chem. Soc., Perkin Trans., 1: 1605-1611 (2001);
Wu et al., J. Am. Chem. Soc., 122(32):7621-7632 (2000); O'Neill et
al., J. Org. Chem., 67:5869-5875 (2002); Chaudhuri et al., J. Am.
Chem. Soc., 117:10434-10442 (1995); and U.S. Pat. No. 6,218,108.).
Base analogs may also be a universal base.
[0215] As used herein, "universal base" refers to a heterocyclic
moiety located at the 1' position of a nucleotide sugar moiety in a
modified nucleotide, or the equivalent position in a nucleotide
sugar moiety substitution, that, when present in a nucleic acid
duplex, can be positioned opposite more than one type of base
without altering the double helical structure (e.g., the structure
of the phosphate backbone). Additionally, the universal base does
not destroy the ability of the single stranded nucleic acid in
which it resides to duplex to a target nucleic acid. The ability of
a single stranded nucleic acid containing a universal base to
duplex a target nucleic can be assayed by methods apparent to one
in the art (e.g., UV absorbance, circular dichroism, gel shift,
single stranded nuclease sensitivity, etc.). Additionally,
conditions under which duplex formation is observed may be varied
to determine duplex stability or formation, e.g., temperature, as
melting temperature (Tm) correlates with the stability of nucleic
acid duplexes. Compared to a reference single stranded nucleic acid
that is exactly complementary to a target nucleic acid, the single
stranded nucleic acid containing a universal base forms a duplex
with the target nucleic acid that has a lower Tm than a duplex
formed with the complementary nucleic acid. However, compared to a
reference single stranded nucleic acid in which the universal base
has been replaced with a base to generate a single mismatch, the
single stranded nucleic acid containing the universal base forms a
duplex with the target nucleic acid that has a higher Tm than a
duplex formed with the nucleic acid having the mismatched base.
[0216] Some universal bases are capable of base pairing by forming
hydrogen bonds between the universal base and all of the bases
guanine (G), cytosine (C), adenine (A), thymine (T), and uracil (U)
under base pair forming conditions. A universal base is not a base
that forms a base pair with only one single complementary base. In
a duplex, a universal base may form no hydrogen bonds, one hydrogen
bond, or more than one hydrogen bond with each of G, C, A, T, and U
opposite to it on the opposite strand of a duplex. Preferably, the
universal bases does not interact with the base opposite to it on
the opposite strand of a duplex. In a duplex, base pairing between
a universal base occurs without altering the double helical
structure of the phosphate backbone. A universal base may also
interact with bases in adjacent nucleotides on the same nucleic
acid strand by stacking interactions. Such stacking interactions
stabilize the duplex, especially in situations where the universal
base does not form any hydrogen bonds with the base positioned
opposite to it on the opposite strand of the duplex. Non-limiting
examples of universal-binding nucleotides include inosine,
1-.beta.-D-ribofuranosyl-5-nitroindole, and/or
1-.beta.-D-ribofuranosyl-3-nitropyrrole (US Pat. Appl. Publ. No.
20070254362 to Quay et al.; Van Aerschot et al., An acyclic
5-nitroindazole nucleoside analogue as ambiguous nucleoside.
Nucleic Acids Res. 1995 Nov. 11; 23(21):4363-70; Loakes et al.,
3-Nitropyrrole and 5-nitroindole as universal bases in primers for
DNA sequencing and PCR. Nucleic Acids Res. 1995 Jul. 11;
23(13):2361-6; Loakes and Brown, 5-Nitroindole as an universal base
analogue. Nucleic Acids Res. 1994 Oct. 11; 22(20):4039-43).
[0217] As used herein, "loop" refers to a structure formed by a
single strand of a nucleic acid, in which complementary regions
that flank a particular single stranded nucleotide region hybridize
in a way that the single stranded nucleotide region between the
complementary regions is excluded from duplex formation or
Watson-Crick base pairing. A loop is a single stranded nucleotide
region of any length. Examples of loops include the unpaired
nucleotides present in such structures as hairpins, stem loops, or
extended loops.
[0218] As used herein, "extended loop" in the context of a dsRNA
refers to a single stranded loop and in addition 1, 2, 3, 4, 5, 6
or up to 20 base pairs or duplexes flanking the loop. In an
extended loop, nucleotides that flank the loop on the 5' side form
a duplex with nucleotides that flank the loop on the 3' side. An
extended loop may form a hairpin or stem loop.
[0219] As used herein, "tetraloop" in the context of a dsRNA refers
to a loop (a single stranded region) consisting of four nucleotides
that forms a stable secondary structure that contributes to the
stability of an adjacent Watson-Crick hybridized nucleotides.
Without being limited to theory, a tetraloop may stabilize an
adjacent Watson-Crick base pair by stacking interactions. In
addition, interactions among the four nucleotides in a tetraloop
include but are not limited to non-Watson-Crick base pairing,
stacking interactions, hydrogen bonding, and contact interactions
(Cheong et al., Nature 1990 Aug. 16; 346(6285):680-2; Heus and
Pardi, Science 1991 Jul. 12; 253(5016):191-4). A tetraloop confers
an increase in the melting temperature (Tm) of an adjacent duplex
that is higher than expected from a simple model loop sequence
consisting of four random bases. For example, a tetraloop can
confer a melting temperature of at least 55.degree. C. in 10 mM
NaHPO.sub.4 to a hairpin comprising a duplex of at least 2 base
pairs in length. A tetraloop may contain ribonucleotides,
deoxyribonucleotides, modified nucleotides, and combinations
thereof. Examples of RNA tetraloops include the UNCG family of
tetraloops (e.g., UUCG), the GNRA family of tetraloops (e.g.,
GAAA), and the CUUG tetraloop. (Woese et al., Proc Natl Acad Sci
USA. 1990 November; 87(21):8467-71; Antao et al., Nucleic Acids
Res. 1991 Nov. 11; 19(21):5901-5). Examples of DNA tetraloops
include the d(GNNA) family of tetraloops (e.g., d(GTTA), the
d(GNRA)) family of tetraloops, the d(GNAB) family of tetraloops,
the d(CNNG) family of tetraloops, the d(TNCG) family of tetraloops
(e.g., d(TTCG)). (Nakano et al. Biochemistry, 41 (48), 14281-14292,
2002; SHINJI et al. Nippon Kagakkai Koen Yokoshu VOL. 78th; NO. 2;
PAGE. 731 (2000).)
[0220] The dsRNA compositions of the invention, because they are
modeled to enter the RNAi pathway as substrates of the Dicer
enzyme, at least in part due the strand lengths of such
compositions, are also referred to as Dicer substrate siRNA
("DsiRNA") agents herein. The "DsiRNA agent" compositions of the
instant invention comprise dsRNA which is a precursor molecule for
Dicer enzyme processing, i.e., the DsiRNA of the present invention
is processed in vivo to produce an active siRNA. Specifically, the
DsiRNA is processed by Dicer to an active siRNA which is
incorporated into RISC. This precursor molecule, primarily referred
to as a "DsiRNA agent" or "DsiRNA molecule" herein, can also be
referred to as a precursor RNAi molecule herein. As used herein,
the term "active siRNA" refers to a double stranded nucleic acid in
which each strand comprises RNA, RNA analog(s) or RNA and DNA. The
siRNA comprises between 19 and 23 nucleotides or comprises 21
nucleotides. The active siRNA typically has 2 bp overhangs on the
3' ends of each strand such that the duplex region in the siRNA
comprises 17-21 nucleotides, or 19 nucleotides.
[0221] In certain embodiments, dsRNAs of the invention include but
are not limited to dsRNAs comprising first and second strands
comprising between 16 and 50, 19 and 35, 19 and 24, 25 and 30, 25
and 35, 26 and 30, 21 and 23 nucleotides in length.
[0222] A DsiRNA agent of the instant invention has a length
sufficient such that it is processed by Dicer to produce an siRNA.
Accordingly, a suitable DsiRNA agent contains one oligonucleotide
sequence, a first sequence, that is at least 25 nucleotides in
length and no longer than about 35 nucleotides. This sequence of
RNA can be between about 26 and 35, 26 and 34, 26 and 33, 26 and
32, 26 and 31, 26 and 30, and 26 and 29 nucleotides in length. This
sequence can be about 27 or 28 nucleotides in length or 27
nucleotides in length. The second sequence of the DsiRNA agent can
be any sequence that anneals to the first sequence under biological
conditions, such as within the cytoplasm of a eukaryotic cell.
Generally, the second oligonucleotide sequence will have at least
19 complementary base pairs with the first oligonucleotide
sequence, more typically the second oligonucleotides sequence will
have about 21 or more complementary base pairs, or about 25 or more
complementary base pairs with the first oligonucleotide sequence.
In one embodiment, the second sequence is the same length as the
first sequence, and the DsiRNA agent is blunt ended. In another
embodiment, the ends of the DsiRNA agent have one or more
overhangs. In certain embodiments, wherein the second sequence is
the same length as the first sequence, the ultimate residue of said
3' terminus of said first strand and the ultimate residue of the
said 5' terminus of the second strand form a mismatched base pair.
In other embodiments, wherein the second sequence is the same
length as the first sequence, the ultimate residue of the 5'
terminus of said first strand and the ultimate residue of the 3'
terminus of the second strand form a mismatched base pair. In other
embodiments, wherein the second sequence is the same length as the
first sequence, the ultimate and penultimate residues of the 3'
terminus of the first strand and the ultimate and penultimate
residues of the 5' terminus of the second strand form two
mismatched base pairs. In still other embodiments, wherein the
second sequence is the same length as the first sequence, the
ultimate and penultimate residues of the 5' terminus of the first
strand and the ultimate and penultimate residues of the 3' terminus
of the second strand form two mismatched base pairs.
[0223] In certain embodiments, the first and second oligonucleotide
sequences of the DsiRNA agent exist on separate oligonucleotide
strands that can be and typically are chemically synthesized. In
some embodiments, both strands are between 26 and 35 nucleotides in
length. In other embodiments, both strands are between 25 and 30 or
26 and 30 nucleotides in length. In one embodiment, both strands
are 27 nucleotides in length, are completely complementary and have
blunt ends. In one embodiment, one or both oligonucleotide strands
are capable of serving as a substrate for Dicer. In other
embodiments, at least one modification is present that promotes
Dicer to bind to the double-stranded RNA structure in an
orientation that maximizes the double-stranded RNA structure's
effectiveness in inhibiting gene expression. In certain embodiments
of the instant invention, the DsiRNA agent is comprised of two
oligonucleotide strands of differing lengths, with the DsiRNA
possessing a blunt end at the 3' terminus of a first strand (sense
strand) and a 3' overhang at the 3' terminus of a second strand
(antisense strand). The DsiRNA can also contain one or more
deoxyribonucleic acid (DNA) base substitutions.
[0224] Suitable DsiRNA compositions that contain two separate
oligonucleotides can be chemically linked outside their annealing
region by chemical linking groups. Many suitable chemical linking
groups are known in the art and can be used. Suitable groups will
not block Dicer activity on the DsiRNA and will not interfere with
the directed destruction of the RNA transcribed from the target
gene. Alternatively, the two separate oligonucleotides can be
linked by a third oligonucleotide such that a hairpin structure is
produced upon annealing of the two oligonucleotides making up the
DsiRNA composition. The hairpin structure will not block Dicer
activity on the DsiRNA and will not interfere with the directed
destruction of the target RNA.
[0225] As used herein, a dsRNA, e.g., DsiRNA or siRNA, having a
sequence "sufficiently complementary" to a target RNA or cDNA
sequence means that the dsRNA has a sequence sufficient to trigger
the destruction of the target RNA (where a cDNA sequence is
recited, the RNA sequence corresponding to the recited cDNA
sequence) by the RNAi machinery (e.g., the RISC complex) or
process. The dsRNA molecule can be designed such that every residue
of the antisense strand is complementary to a residue in the target
molecule. Alternatively, substitutions can be made within the
molecule to increase stability and/or enhance processing activity
of said molecule. Substitutions can be made within the strand or
can be made to residues at the ends of the strand. In certain
embodiments, substitutions and/or modifications are made at
specific residues within a DsiRNA agent. Such substitutions and/or
modifications can include, e.g., deoxy-modifications at one or more
residues of positions 1, 2 and 3 when numbering from the 3'
terminal position of the sense strand of a DsiRNA agent;
deoxy-modifications at one or more residues of positions 1, 2, 3 or
4 when numbering from the 5' terminal position of the antisense
strand of a DsiRNA agent and introduction of 2'-O-alkyl (e.g.,
2'-O-methyl) modifications at the 3' terminal residue of the
antisense strand of DsiRNA agents, with such modifications also or
alternatively being present at overhang positions of the 3' portion
of the antisense strand and/or throughout the DsiRNA agent, for
example at alternating residues or in pairs of residues of the
antisense strand of the DsiRNA that are included within the region
of a DsiRNA agent that is processed to form an active siRNA agent.
The preceding modifications are offered as exemplary, and are not
intended to be limiting in any manner. Further consideration of the
structure of preferred DsiRNA agents, including further description
of the modifications and substitutions that can be performed upon
the DsiRNA agents of the instant invention, can be found below.
[0226] By "complementarity" is meant that a nucleic acid can form
hydrogen bond(s) with another nucleic acid sequence by either
traditional Watson-Crick or other non-traditional types. In
reference to the nucleic molecules of the present invention, the
binding free energy for a nucleic acid molecule with its
complementary sequence is sufficient to allow the relevant function
of the nucleic acid to proceed, e.g., RNAi activity. Determination
of binding free energies for nucleic acid molecules is well known
in the art (see, e.g., Turner et al., 1987, CSH Symp. Quant. Biol.
LII pp. 123-133; Frier et al., 1986, Proc. Nat. Acad. Sci. USA
83:9373-9377; Turner et al., 1987, J. Am. Chem. Soc.
109:3783-3785). A percent complementarity indicates the percentage
of contiguous residues in a nucleic acid molecule that can form
hydrogen bonds (e.g., Watson-Crick base pairing) with a second
nucleic acid sequence (e.g., 5, 6, 7, 8, 9, or 10 nucleotides out
of a total of 10 nucleotides in the first oligonucleotide being
based paired to a second nucleic acid sequence having 10
nucleotides represents 50%, 60%, 70%, 80%, 90%, and 100%
complementary respectively). "Perfectly complementary" means that
all the contiguous residues of a nucleic acid sequence will
hydrogen bond with the same number of contiguous residues in a
second nucleic acid sequence. In one embodiment, a DsiRNA molecule
of the invention comprises about 19 to about 30 (e.g., about 19,
20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or or more) nucleotides
that are complementary to one or more target nucleic acid molecules
or a portion thereof.
[0227] The phrase "duplex region" refers to the region in two
complementary or substantially complementary oligonucleotides that
form base pairs with one another, either by Watson-Crick base
pairing or any other manner that allows for a duplex between
oligonucleotide strands that are complementary or substantially
complementary. For example, an oligonucleotide strand having 21
nucleotide units can base pair with another oligonucleotide of 21
nucleotide units, yet only 19 bases on each strand are
complementary or substantially complementary, such that the "duplex
region" consists of 19 base pairs. The remaining base pairs may,
for example, exist as 5' and 3' overhangs. Further, within the
duplex region, 100% complementarity is not required; substantial
complementarity is allowable within a duplex region.
[0228] Substantial complementarity refers to complementarity
between the strands such that they are capable of annealing under
biological conditions. Techniques to empirically determine if two
strands are capable of annealing under biological conditions are
well know in the art. Alternatively, two strands can be synthesized
and added together under biological conditions to determine if they
anneal to one another.
[0229] Single-stranded nucleic acids that base pair over a number
of bases are said to "hybridize." Hybridization is typically
determined under physiological or biologically relevant conditions
(e.g., intracellular: pH 7.2, 140 mM potassium ion; extracellular
pH 7.4, 145 mM sodium ion). Hybridization conditions generally
contain a monovalent cation and biologically acceptable buffer and
may or may not contain a divalent cation, complex anions, e.g.
gluconate from potassium gluconate, uncharged species such as
sucrose, and inert polymers to reduce the activity of water in the
sample, e.g. PEG. Such conditions include conditions under which
base pairs can form.
[0230] Hybridization is measured by the temperature required to
dissociate single stranded nucleic acids forming a duplex, i.e.,
(the melting temperature; Tm). Hybridization conditions are also
conditions under which base pairs can form. Various conditions of
stringency can be used to determine hybridization (see, e.g., Wahl,
G. M. and S. L. Berger (1987) Methods Enzymol. 152:399; Kimmel, A.
R. (1987) Methods Enzymol. 152:507). Stringent temperature
conditions will ordinarily include temperatures of at least about
30.degree. C., more preferably of at least about 37.degree. C., and
most preferably of at least about 42.degree. C. The hybridization
temperature for hybrids anticipated to be less than 50 base pairs
in length should be 5-10.degree. C. less than the melting
temperature (Tm) of the hybrid, where Tm is determined according to
the following equations. For hybrids less than 18 base pairs in
length, Tm(.degree. C.)=2(# of A+T bases)+4(# of G+C bases). For
hybrids between 18 and 49 base pairs in length, Tm(.degree.
C.)=81.5+16.6(log 10[Na+])+0.41 (% G+C)-(600/N), where N is the
number of bases in the hybrid, and [Na+] is the concentration of
sodium ions in the hybridization buffer ([Na+] for
1.times.SSC=0.165 M). For example, a hybridization determination
buffer is shown in Table 1.
TABLE-US-00001 TABLE 1 To make 50 final conc. Vender Cat# Lot#
m.w./Stock mL solution NaCl 100 mM Sigma S-5150 41K8934 5M 1 mL KCl
80 mM Sigma P-9541 70K0002 74.55 0.298 g MgCl.sub.2 8 mM Sigma
M-1028 120K8933 1M 0.4 mL sucrose 2% w/v Fisher BP220-212 907105
342.3 1 g Tris-HCl 16 mM Fisher BP1757-500 12419 1M 0.8 mL
NaH.sub.2PO.sub.4 1 mM Sigma S-3193 52H-029515 120.0 0.006 g EDTA
0.02 mM Sigma E-7889 110K89271 0.5M 2 .mu.L H.sub.2O Sigma W-4502
51K2359 to 50 mL pH = 7.0 at 20.degree. C. adjust with HCl
[0231] Useful variations on hybridization conditions will be
readily apparent to those skilled in the art. Hybridization
techniques are well known to those skilled in the art and are
described, for example, in Benton and Davis (Science 196:180,
1977); Grunstein and Hogness (Proc. Natl. Acad. Sci., USA 72:3961,
1975); Ausubel et al. (Current Protocols in Molecular Biology,
Wiley Interscience, New York, 2001); Berger and Kimmel (Antisense
to Molecular Cloning Techniques, 1987, Academic Press, New York);
and Sambrook et al., Molecular Cloning: A Laboratory Manual, Cold
Spring Harbor Laboratory Press, New York.
[0232] As used herein, "oligonucleotide strand" is a single
stranded nucleic acid molecule. An oligonucleotide may comprise
ribonucleotides, deoxyribonucleotides, modified nucleotides (e.g.,
nucleotides with 2' modifications, synthetic base analogs, etc.) or
combinations thereof. Such modified oligonucleotides can be
preferred over native forms because of properties such as, for
example, enhanced cellular uptake and increased stability in the
presence of nucleases.
[0233] Certain dsRNAs of this invention can be chimeric
double-stranded ribonucleic acids (dsRNAs). "Chimeric dsRNAs" or
"chimeras", in the context of this invention, are dsRNAs which
contain two or more chemically distinct regions, each made up of at
least one nucleotide. These dsRNAs typically contain at least one
region primarily comprising ribonucleotides (optionally including
modified ribonucleotides) that form a Dicer substrate siRNA
("DsiRNA") molecule. This DsiRNA region can be covalently attached
to a second region comprising base paired deoxyribonucleotides (a
"dsDNA region") on either flank of the ribonucleotide duplex
region, which can confer one or more beneficial properties (such
as, for example, increased efficacy, e.g., increased potency and/or
duration of DsiRNA activity, function as a recognition domain or
means of targeting a chimeric dsNA to a specific location, for
example, when administered to cells in culture or to a subject,
functioning as an extended region for improved attachment of
functional groups, payloads, detection/detectable moieties,
functioning as an extended region that allows for more desirable
modifications and/or improved spacing of such modifications, etc.).
This second region, e.g., comprising base paired
deoxyribonucleotides may also include modified or synthetic
nucleotides and/or modified or synthetic deoxyribonucleotides.
[0234] As used herein, the term "ribonucleotide" encompasses
natural and synthetic, unmodified and modified ribonucleotides.
Modifications include changes to the sugar moiety, to the base
moiety and/or to the linkages between ribonucleotides in the
oligonucleotide. As used herein, the term "ribonucleotide"
specifically excludes a deoxyribonucleotide, which is a nucleotide
possessing a single proton group at the 2' ribose ring
position.
[0235] As used herein, the term "deoxyribonucleotide" encompasses
natural and synthetic, unmodified and modified
deoxyribonucleotides. Modifications include changes to the sugar
moiety, to the base moiety and/or to the linkages between
deoxyribonucleotide in the oligonucleotide. As used herein, the
term "deoxyribonucleotide" also includes a modified ribonucleotide
that does not permit Dicer cleavage of a dsRNA agent, e.g., a
2'-O-methyl ribonucleotide, a phosphorothioate-modified
ribonucleotide residue, etc., that does not permit Dicer cleavage
to occur at a bond of such a residue.
[0236] As used herein, the term "PS-NA" refers to a
phosphorothioate-modified nucleotide residue. The term "PS-NA"
therefore encompasses both phosphorothioate-modified
ribonucleotides ("PS-RNAs") and phosphorothioate-modified
deoxyribonucleotides ("PS-DNAs").
[0237] As used herein, "Dicer" refers to an endoribonuclease in the
RNase III family that cleaves a dsRNA or dsRNA-containing molecule,
e.g., double-stranded RNA (dsRNA) or pre-microRNA (miRNA), into
double-stranded nucleic acid fragments about 19-25 nucleotides
long, usually with a two-base overhang on the 3' end. With respect
to the dsRNAs of the invention, the duplex formed by a dsRNA region
of a dsRNA of the invention is recognized by Dicer and is a Dicer
substrate on at least one strand of the duplex. Dicer catalyzes the
first step in the RNA interference pathway, which consequently
results in the degradation of a target RNA. The protein sequence of
human Dicer is provided at the NCBI database under accession number
NP 085124, hereby incorporated by reference.
[0238] Dicer "cleavage" is determined as follows (e.g., see
Collingwood et al., Oligonucleotides 18:187-200 (2008)). In a Dicer
cleavage assay, RNA duplexes (100 pmol) are incubated in 20 .mu.L
of 20 mM Tris pH 8.0, 200 mM NaCl, 2.5 mM MgCl2 with or without 1
unit of recombinant human Dicer (Stratagene, La Jolla, Calif.) at
37.degree. C. for 18-24 hours. Samples are desalted using a
Performa SR 96-well plate (Edge Biosystems, Gaithersburg, Md.).
Electrospray-ionization liquid chromatography mass spectroscopy
(ESI-LCMS) of duplex RNAs pre- and post-treatment with Dicer is
done using an Oligo HTCS system (Novatia, Princeton, N.J.; Hail et
al., 2004), which consists of a ThermoFinnigan TSQ7000, Xcalibur
data system, ProMass data processing software and Paradigm MS4 HPLC
(Michrom BioResources, Auburn, Calif.). In this assay, Dicer
cleavage occurs where at least 5%, 10%, 20%, 30%, 40%, 50%, 60%,
70%, 80%, 90%, 95%, or even 100% of the Dicer substrate dsRNA,
(i.e., 25-30 bp, dsRNA, preferably 26-30 bp dsRNA) is cleaved to a
shorter dsRNA (e.g., 19-23 bp dsRNA, preferably, 21-23 bp
dsRNA).
[0239] As used herein, "Dicer cleavage site" refers to the sites at
which Dicer cleaves a dsRNA (e.g., the dsRNA region of a dsRNA of
the invention). Dicer contains two RNase III domains which
typically cleave both the sense and antisense strands of a dsRNA.
The average distance between the RNase III domains and the PAZ
domain determines the length of the short double-stranded nucleic
acid fragments it produces and this distance can vary (Macrae I, et
al. (2006). "Structural basis for double-stranded RNA processing by
Dicer". Science 311 (5758): 195-8.). Dicer is projected to cleave
certain double-stranded nucleic acids of the instant invention that
possess an antisense strand having a 2 nucleotide 3' overhang at a
site between the 21.sup.st and 22.sup.nd nucleotides removed from
the 3' terminus of the antisense strand, and at a corresponding
site between the 21.sup.st and 22.sup.nd nucleotides removed from
the 5' terminus of the sense strand. The projected and/or prevalent
Dicer cleavage site(s) for dsRNA molecules distinct from those are
known in the art or may be similarly identified via art-recognized
methods, including those described in Macrae et al. Dicer cleavage
of a dsRNA (e.g., DsiRNA) can result in generation of
Dicer-processed siRNA lengths of 19 to 23 nucleotides in length.
Indeed, in one aspect of the invention that is described in greater
detail below, a double stranded DNA region is included within a
dsRNA for purpose of directing prevalent Dicer excision of a
typically non-preferred 19mer siRNA.
[0240] As used herein, "overhang" refers to unpaired nucleotides,
in the context of a duplex having one, two, three, four or five
free ends at either the 5' terminus or 3' terminus of a dsRNA. In
certain embodiments, the overhang is a 3' or 5' overhang on the
antisense strand or sense strand.
[0241] As used herein, the term "DmiRNA" refers to a species of
Dicer substrate siRNA ("DsiRNA") that possesses at least one
mismatch nucleotide within the antisense (guide) strand of the
DmiRNA agent, specifically within the region of the antisense
strand that functions as an RNA interference agent and is believed
to hybridize with the sequence of a target RNA. Such mismatch
nucleotide can exist either with respect to the sense (passenger)
strand, with respect to the target RNA sequence to which the
antisense strand of the DmiRNA is believed to hybridize, or with
respect to both.
[0242] As used herein, the term "RNA processing" refers to
processing activities performed by components of the siRNA, miRNA
or RNase H pathways (e.g., Drosha, Dicer, Argonaute2 or other RISC
endoribonucleases, and RNaseH), which are described in greater
detail below (see "RNA Processing" section below). The term is
explicitly distinguished from the post-transcriptional processes of
5' capping of RNA and degradation of RNA via non-RISC- or non-RNase
H-mediated processes. Such "degradation" of an RNA can take several
forms, e.g. deadenylation (removal of a 3' poly(A) tail), and/or
nuclease digestion of part or all of the body of the RNA by any of
several endo- or exo-nucleases (e.g., RNase III, RNase P, RNase T1,
RNase A (1, 2, 3, 4/5), oligonucleotidase, etc.).
[0243] By "homologous sequence" is meant, a nucleotide sequence
that is shared by one or more polynucleotide sequences, such as
genes, gene transcripts and/or non-coding polynucleotides. For
example, a homologous sequence can be a nucleotide sequence that is
shared by two or more genes encoding related but different
proteins, such as different members of a gene family, different
protein epitopes, different protein isoforms or completely
divergent genes, such as a cytokine and its corresponding
receptors. A homologous sequence can be a nucleotide sequence that
is shared by two or more non-coding polynucleotides, such as
noncoding DNA or RNA, regulatory sequences, introns, and sites of
transcriptional control or regulation. Homologous sequences can
also include conserved sequence regions shared by more than one
polynucleotide sequence. Homology does not need to be perfect
homology (e.g., 100%), as partially homologous sequences are also
contemplated by the instant invention (e.g., 99%, 98%, 97%, 96%,
95%, 94%, 93%, 92%, 91%, 90%, 89%, 88%, 87%, 86%, 85%, 84%, 83%,
82%, 81%, 80% etc.). Indeed, design and use of the DsiRNA agents of
the instant invention contemplates the possibility of using such
DsiRNA agents not only against target RNAs of interest possessing
perfect complementarity with the presently described DsiRNA agents,
but also against target RNAs of interest possessing sequences that
are, e.g., only 99%, 98%, 97%, 96%, 95%, 94%, 93%, 92%, 91%, 90%,
89%, 88%, 87%, 86%, 85%, 84%, 83%, 82%, 81%, 80% etc. complementary
to said DsiRNA agents. Similarly, it is contemplated that the
presently described DsiRNA agents of the instant invention might be
readily altered by the skilled artisan to enhance the extent of
complementarity between said DsiRNA agents and a target RNA of
interest, e.g., of a specific allelic variant (e.g., an allele of
enhanced therapeutic interest). Indeed, DsiRNA agent sequences with
insertions, deletions, and single point mutations relative to the
target sequence of interest can also be effective for inhibition
(possibly believed to act via microRNA-like translational
inhibition, rather than destruction, of targeted transcripts;
accordingly, such DsiRNA agents can be termed "DmiRNAs").
Alternatively, DsiRNA agent sequences with nucleotide analog
substitutions or insertions can be effective for inhibition.
[0244] Sequence identity may be determined by sequence comparison
and alignment algorithms known in the art. To determine the percent
identity of two nucleic acid sequences (or of two amino acid
sequences), the sequences are aligned for optimal comparison
purposes (e.g., gaps can be introduced in the first sequence or
second sequence for optimal alignment). The nucleotides (or amino
acid residues) at corresponding nucleotide (or amino acid)
positions are then compared. When a position in the first sequence
is occupied by the same residue as the corresponding position in
the second sequence, then the molecules are identical at that
position. The percent identity between the two sequences is a
function of the number of identical positions shared by the
sequences (i.e., % homology=# of identical positions/total # of
positions.times.100), optionally penalizing the score for the
number of gaps introduced and/or length of gaps introduced.
[0245] The comparison of sequences and determination of percent
identity between two sequences can be accomplished using a
mathematical algorithm. In one embodiment, the alignment generated
over a certain portion of the sequence aligned having sufficient
identity but not over portions having low degree of identity (i.e.,
a local alignment). A preferred, non-limiting example of a local
alignment algorithm utilized for the comparison of sequences is the
algorithm of Karlin and Altschul (1990) Proc. Natl. Acad. Sci. USA
87:2264-68, modified as in Karlin and Altschul (1993) Proc. Natl.
Acad. Sci. USA 90:5873-77. Such an algorithm is incorporated into
the BLAST programs (version 2.0) of Altschul, et al. (1990) J. Mol.
Biol. 215:403-10.
[0246] In another embodiment, the alignment is optimized by
introducing appropriate gaps and percent identity is determined
over the length of the aligned sequences (i.e., a gapped
alignment). To obtain gapped alignments for comparison purposes,
Gapped BLAST can be utilized as described in Altschul et al.,
(1997) Nucleic Acids Res. 25(17):3389-3402. In another embodiment,
the alignment is optimized by introducing appropriate gaps and
percent identity is determined over the entire length of the
sequences aligned (i.e., a global alignment). A preferred,
non-limiting example of a mathematical algorithm utilized for the
global comparison of sequences is the algorithm of Myers and
Miller, CABIOS (1989). Such an algorithm is incorporated into the
ALIGN program (version 2.0) which is part of the GCG sequence
alignment software package. When utilizing the ALIGN program for
comparing amino acid sequences, a PAM120 weight residue table, a
gap length penalty of 12, and a gap penalty of 4 can be used.
[0247] Greater than 80% sequence identity, e.g., 80%, 81%, 82%,
83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99% or even 100% sequence identity, between the
DsiRNA antisense strand and a portion of the RNA sequence of
interest is preferred. Alternatively, the DsiRNA may be defined
functionally as a nucleotide sequence (or oligonucleotide sequence)
that is capable of hybridizing with a portion of the RNA of
interest (e.g., 400 mM NaCl, 40 mM PIPES pH 6.4, 1 mM EDTA,
50.degree. C. or 70.degree. C. hybridization for 12-16 hours;
followed by washing). Additional preferred hybridization conditions
include hybridization at 70.degree. C. in 1.times.SSC or 50.degree.
C. in 1.times.SSC, 50% formamide followed by washing at 70.degree.
C. in 0.3.times.SSC or hybridization at 70.degree. C. in
4.times.SSC or 50.degree. C. in 4.times.SSC, 50% formamide followed
by washing at 67.degree. C. in 1.times.SSC. The hybridization
temperature for hybrids anticipated to be less than 50 base pairs
in length should be 5-10.degree. C. less than the melting
temperature (Tm) of the hybrid, where Tm is determined according to
the following equations. For hybrids less than 18 base pairs in
length, Tm(.degree. C.)=2(# of A+T bases)+4(# of G+C bases). For
hybrids between 18 and 49 base pairs in length, Tm(.degree.
C.)=81.5+16.6(log 10[Na+])+0.41 (% G+C)-(600/N), where N is the
number of bases in the hybrid, and [Na+] is the concentration of
sodium ions in the hybridization buffer ([Na+] for
1.times.SSC=0.165 M). Additional examples of stringency conditions
for polynucleotide hybridization are provided in Sambrook, J., E.
F. Fritsch, and T. Maniatis, 1989, Molecular Cloning: A Laboratory
Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor,
N.Y., chapters 9 and 11, and Current Protocols in Molecular
Biology, 1995, F. M. Ausubel et al., eds., John Wiley & Sons,
Inc., sections 2.10 and 6.3-6.4. The length of the identical
nucleotide sequences may be at least about 10, 12, 15, 17, 20, 22,
25, 27 or 30 bases.
[0248] By "conserved sequence region" is meant, a nucleotide
sequence of one or more regions in a polynucleotide does not vary
significantly between generations or from one biological system,
subject, or organism to another biological system, subject, or
organism. The polynucleotide can include both coding and non-coding
DNA and RNA.
[0249] By "sense region" is meant a nucleotide sequence of a DsiRNA
molecule having complementarity to an antisense region of the
DsiRNA molecule. In addition, the sense region of a DsiRNA molecule
can comprise a nucleic acid sequence having homology with a target
nucleic acid sequence.
[0250] By "antisense region" is meant a nucleotide sequence of a
DsiRNA molecule having complementarity to a target nucleic acid
sequence. In addition, the antisense region of a DsiRNA molecule
comprises a nucleic acid sequence having complementarity to a sense
region of the DsiRNA molecule.
[0251] As used herein, "antisense strand" refers to a single
stranded nucleic acid molecule which has a sequence complementary
to that of a target RNA. When the antisense strand contains
modified nucleotides with base analogs, it is not necessarily
complementary over its entire length, but must at least hybridize
with a target RNA.
[0252] As used herein, "sense strand" refers to a single stranded
nucleic acid molecule which has a sequence complementary to that of
an antisense strand. When the antisense strand contains modified
nucleotides with base analogs, the sense strand need not be
complementary over the entire length of the antisense strand, but
must at least duplex with the antisense strand.
[0253] As used herein, "guide strand" refers to a single stranded
nucleic acid molecule of a dsRNA or dsRNA-containing molecule,
which has a sequence sufficiently complementary to that of a target
RNA to result in RNA interference. After cleavage of the dsRNA or
dsRNA-containing molecule by Dicer, a fragment of the guide strand
remains associated with RISC, binds a target RNA as a component of
the RISC complex, and promotes cleavage of a target RNA by RISC. As
used herein, the guide strand does not necessarily refer to a
continuous single stranded nucleic acid and may comprise a
discontinuity, preferably at a site that is cleaved by Dicer. A
guide strand is an antisense strand.
[0254] As used herein, "passenger strand" refers to an
oligonucleotide strand of a dsRNA or dsRNA-containing molecule,
which has a sequence that is complementary to that of the guide
strand. As used herein, the passenger strand does not necessarily
refer to a continuous single stranded nucleic acid and may comprise
a discontinuity, preferably at a site that is cleaved by Dicer. A
passenger strand is a sense strand.
[0255] By "target nucleic acid" is meant any nucleic acid sequence
whose expression, level or activity is to be modulated. The target
nucleic acid can be DNA or RNA. Levels of expression may also be
targeted via targeting of upstream effectors of the target of
interest, or the effects of a modulated or misregulated target may
also be modulated by targeting molecules downstream of, for
example, the signaling pathway of a target of interest.
[0256] As is known, RNAi methods are applicable to a wide variety
of genes in a wide variety of organisms and the disclosed
compositions and methods can be utilized in each of these contexts.
Examples of genes which can be targeted by the disclosed
compositions and methods include endogenous genes which are genes
that are native to the cell or to genes that are not normally
native to the cell. Without limitation these genes include
oncogenes, cytokine genes, idiotype (Id) protein genes, prion
genes, genes that expresses molecules that induce angiogenesis,
genes for adhesion molecules, cell surface receptors, proteins
involved in metastasis, proteases, apoptosis genes, cell cycle
control genes, genes that express EGF and the EGF receptor,
multi-drug resistance genes, such as the MDR1 gene.
[0257] More specifically, the target mRNA of the invention
specifies the amino acid sequence of a cellular protein (e.g., a
nuclear, cytoplasmic, transmembrane, or membrane-associated
protein). In another embodiment, the target mRNA of the invention
specifies the amino acid sequence of an extracellular protein
(e.g., an extracellular matrix protein or secreted protein). As
used herein, the phrase "specifies the amino acid sequence" of a
protein means that the mRNA sequence is translated into the amino
acid sequence according to the rules of the genetic code. The
following classes of proteins are listed for illustrative purposes:
developmental proteins (e.g., adhesion molecules, cyclin kinase
inhibitors, Wnt family members, Pax family members, Winged helix
family members, Hox family members, cytokines/lymphokines and their
receptors, growth/differentiation factors and their receptors,
neurotransmitters and their receptors); oncogene-encoded proteins
(e.g., ABLI, BCLI, BCL2, BCL6, CBFA2, CBL, CSFIR, ERBA, ERBB,
EBRB2, ETSI, ETSI, ETV6, FGR, FOS, FYN, HCR, HRAS, JUN, KRAS, LCK,
LYN, MDM2, MLL, MYB, MYC, MYCLI, MYCN, NRAS, PIM I, PML, RET, SRC,
TALI, TCL3, and YES); tumor suppressor proteins (e.g., BRCA1,
BRCA2, MADH4, MCC, NF I, NF2, RBI, TP53, and WTI); and enzymes
(e.g., ACC synthases and oxidases, ACP desaturases and
hydroxylases, ADP-glucose pyrophorylases, ATPases, alcohol
dehydrogenases, amylases, amyloglucosidases, catalases, cellulases,
chalcone synthases, chitinases, cyclooxygenases, decarboxylases,
dextriinases, DNA and RNA polymerases, galactosidases, glucanases,
glucose oxidases, granule-bound starch synthases, GTPases,
helicases, hernicellulases, integrases, inulinases, invertases,
isomerases, kinases, lactases, lipases, lipoxygenases, lysozymes,
nopaline synthases, octopine synthases, pectinesterases,
peroxidases, phosphatases, phospholipases, phosphorylases,
phytases, plant growth regulator synthases, polygalacturonases,
proteinases and peptidases, pullanases, recombinases, reverse
transcriptases, RUBISCOs, topoisomerases, and xylanases), ApoB100
and HPRT1.
[0258] In one aspect, the target mRNA molecule of the invention
specifies the amino acid sequence of a protein associated with a
pathological condition. For example, the protein may be a
pathogen-associated protein (e.g., a viral protein involved in
immunosuppression of the host, replication of the pathogen,
transmission of the pathogen, or maintenance of the infection), or
a host protein which facilitates entry of the pathogen into the
host, drug metabolism by the pathogen or host, replication or
integration of the pathogen's genome, establishment or spread of
infection in the host, or assembly of the next generation of
pathogen. Pathogens include RNA viruses such as flaviviruses,
picornaviruses, rhabdoviruses, filoviruses, retroviruses, including
lentiviruses, or DNA viruses such as adenoviruses, poxviruses,
herpes viruses, cytomegaloviruses, hepadnaviruses or others.
Additional pathogens include bacteria, fungi, helminths,
schistosomes and trypanosomes. Other kinds of pathogens can include
mammalian transposable elements. Alternatively, the protein may be
a tumor-associated protein or an autoimmune disease-associated
protein.
[0259] The target gene may be derived from or contained in any
organism. The organism may be a plant, animal, protozoa, bacterium,
virus or fungus. See e.g., U.S. Pat. No. 6,506,559, incorporated
herein by reference.
[0260] In one embodiment of the present invention, each sequence of
a DsiRNA molecule of the invention is independently about 25 to
about 35 nucleotides in length, in specific embodiments about 25,
26, 27, 28, 29, 30, 31, 32, 33, 34 or 35 nucleotides in length. In
another embodiment, the DsiRNA duplexes of the invention
independently comprise about 25 to about 30 base pairs (e.g., about
25, 26, 27, 28, 29, or 30). In another embodiment, one or more
strands of the DsiRNA molecule of the invention independently
comprises about 19 to about 35 nucleotides (e.g., about 19, 20, 21,
22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34 or 35) that are
complementary to a target nucleic acid molecule of interest.
Exemplary DsiRNA molecules of the invention are shown in FIG. 1,
and below.
[0261] As used herein "cell" is used in its usual biological sense,
and does not refer to an entire multicellular organism, e.g.,
specifically does not refer to a human. The cell can be present in
an organism, e.g., birds, plants and mammals such as humans, cows,
sheep, apes, monkeys, swine, dogs, and cats. The cell can be
prokaryotic (e.g., bacterial cell) or eukaryotic (e.g., mammalian
or plant cell). The cell can be of somatic or germ line origin,
totipotent or pluripotent, dividing or non-dividing. The cell can
also be derived from or can comprise a gamete or embryo, a stem
cell, or a fully differentiated cell. Within certain aspects, the
term "cell" refers specifically to mammalian cells, such as human
cells, that contain one or more isolated dsNA molecules of the
present disclosure. In particular aspects, a cell processes dsRNAs
or dsRNA-containing molecules resulting in RNA interference of
target nucleic acids, and contains proteins and protein complexes
required for RNAi, e.g., Dicer and RISC.
[0262] The DsiRNA molecules of the invention are added directly, or
can be complexed with cationic lipids, packaged within liposomes,
or otherwise delivered to target cells or tissues. The nucleic acid
or nucleic acid complexes can be locally administered to relevant
tissues ex vivo, or in vivo through direct dermal application,
transdermal application, or injection, with or without their
incorporation in biopolymers. In certain aspects of the invention,
the dsRNAs of the exemplary structures of dsRNA-peptides presented
in FIG. 1 are modified in accordance with the below description of
modification patterning of DsiRNA agents. Chemically modified forms
of constructs described in FIG. 1, and the below exemplary
structures can be used in any and all uses described for the DsiRNA
agents described herein.
[0263] In another aspect, the invention provides mammalian cells
containing one or more DsiRNA molecules of this invention. The one
or more DsiRNA molecules can independently be targeted to the same
or different sites.
[0264] By "RNA" is meant a molecule comprising at least one
ribonucleotide residue. By "ribonucleotide" is meant a nucleotide
with a hydroxyl group at the 2' position of a .beta.-D-ribofuranose
moiety. The terms include double-stranded RNA, single-stranded RNA,
isolated RNA such as partially purified RNA, essentially pure RNA,
synthetic RNA, recombinantly produced RNA, as well as altered RNA
that differs from naturally occurring RNA by the addition,
deletion, substitution and/or alteration of one or more
nucleotides. Such alterations can include addition of
non-nucleotide material, such as to the end(s) of the DsiRNA or
internally, for example at one or more nucleotides of the RNA.
Nucleotides in the RNA molecules of the instant invention can also
comprise non-standard nucleotides, such as non-naturally occurring
nucleotides or chemically synthesized nucleotides or
deoxynucleotides. These altered RNAs can be referred to as analogs
or analogs of naturally-occurring RNA.
[0265] By "subject" is meant an organism, which is a donor or
recipient of explanted cells or the cells themselves. "Subject"
also refers to an organism to which the DsiRNA agents of the
invention can be administered. A subject can be a mammal or
mammalian cells, including a human or human cells.
[0266] The phrase "pharmaceutically acceptable carrier" refers to a
carrier for the administration of a therapeutic agent. Exemplary
carriers include saline, buffered saline, dextrose, water,
glycerol, ethanol, and combinations thereof. For drugs administered
orally, pharmaceutically acceptable carriers include, but are not
limited to pharmaceutically acceptable excipients such as inert
diluents, disintegrating agents, binding agents, lubricating
agents, sweetening agents, flavoring agents, coloring agents and
preservatives. Suitable inert diluents include sodium and calcium
carbonate, sodium and calcium phosphate, and lactose, while corn
starch and alginic acid are suitable disintegrating agents. Binding
agents may include starch and gelatin, while the lubricating agent,
if present, will generally be magnesium stearate, stearic acid or
talc. If desired, the tablets may be coated with a material such as
glyceryl monostearate or glyceryl distearate, to delay absorption
in the gastrointestinal tract. The pharmaceutically acceptable
carrier of the disclosed dsRNA compositions may be micellar
structures, such as a liposomes, capsids, capsoids, polymeric
nanocapsules, or polymeric microcapsules.
[0267] Polymeric nanocapsules or microcapsules facilitate transport
and release of the encapsulated or bound dsRNA into the cell. They
include polymeric and monomeric materials, especially including
polybutylcyanoacrylate. A summary of materials and fabrication
methods has been published (see Kreuter, 1991). The polymeric
materials which are formed from monomeric and/or oligomeric
precursors in the polymerization/nanoparticle generation step, are
per se known from the prior art, as are the molecular weights and
molecular weight distribution of the polymeric material which a
person skilled in the field of manufacturing nanoparticles may
suitably select in accordance with the usual skill.
[0268] Various methodologies of the instant invention include step
that involves comparing a value, level, feature, characteristic,
property, etc. to a "suitable control", referred to interchangeably
herein as an "appropriate control". A "suitable control" or
"appropriate control" is any control or standard familiar to one of
ordinary skill in the art useful for comparison purposes. In one
embodiment, a "suitable control" or "appropriate control" is a
value, level, feature, characteristic, property, etc. determined
prior to performing an RNAi methodology, as described herein. For
example, a transcription rate, mRNA level, translation rate,
protein level, biological activity, cellular characteristic or
property, genotype, phenotype, etc. can be determined prior to
introducing an RNA silencing agent (e.g., DsiRNA) of the invention
into a cell or organism. In another embodiment, a "suitable
control" or "appropriate control" is a value, level, feature,
characteristic, property, etc. determined in a cell or organism,
e.g., a control or normal cell or organism, exhibiting, for
example, normal traits. In yet another embodiment, a "suitable
control" or "appropriate control" is a predefined value, level,
feature, characteristic, property, etc.
[0269] The term "in vitro" has its art recognized meaning, e.g.,
involving purified reagents or extracts, e.g., cell extracts. The
term "in vivo" also has its art recognized meaning, e.g., involving
living cells, e.g., immortalized cells, primary cells, cell lines,
and/or cells in an organism.
[0270] "Treatment", or "treating" as used herein, is defined as the
application or administration of a therapeutic agent (e.g., a
DsiRNA agent or a vector or transgene encoding same) to a patient,
or application or administration of a therapeutic agent to an
isolated tissue or cell line from a patient, who has a disorder
with the purpose to cure, heal, alleviate, relieve, alter, remedy,
ameliorate, improve or affect the disease or disorder, or symptoms
of the disease or disorder. The term "treatment" or "treating" is
also used herein in the context of administering agents
prophylactically. The term "effective dose" or "effective dosage"
is defined as an amount sufficient to achieve or at least partially
achieve the desired effect. The term "therapeutically effective
dose" is defined as an amount sufficient to cure or at least
partially arrest the disease and its complications in a patient
already suffering from the disease. The term "patient" includes
human and other mammalian subjects that receive either prophylactic
or therapeutic treatment.
dsRNA-Peptide Design/Synthesis
[0271] It has been found empirically that longer dsRNA species of
from 25 to about 35 nucleotides (DsiRNAs) and especially from 25 to
about 30 nucleotides give unexpectedly effective results in terms
of potency and duration of action, as compared to 19-23mer siRNA
agents. Without wishing to be bound by the underlying theory of the
dsRNA processing mechanism, it is thought that the longer dsRNA
species serve as a substrate for the Dicer enzyme in the cytoplasm
of a cell. In addition to cleaving the dsRNA of the invention into
shorter segments, Dicer is thought to facilitate the incorporation
of a single-stranded cleavage product derived from the cleaved
dsRNA into the RISC complex that is responsible for the destruction
of a target RNA of interest. Prior studies (Rossi et al., U.S.
Patent Application No. 2007/0265220) have shown that the
cleavability of a dsRNA species (specifically, a DsiRNA agent) by
Dicer corresponds with increased potency and duration of action of
the dsRNA species.
[0272] The invention encompasses dsRNAs comprising double stranded
RNAs comprising a first strand and a second strand wherein the
first strand and the second strand have a length which is at least
16 and at most 50 nucleotides in length (for example 16-50, 19-35,
19-24, 25-30, 25, 35, 19-23, and 21-23 nucleotides in length).
[0273] A. dsRNAs
[0274] Design of dsRNAs, including DsiRNAs can optionally involve
use of predictive scoring algorithms that perform in silico
assessments of the projected activity/efficacy of a number of
possible DsiRNA agents spanning a region of sequence. Information
regarding the design of such scoring algorithms can be found, e.g.,
in Gong et al. (BMC Bioinformatics 2006, 7:516), though a more
recent "v3" algorithm represents a theoretically improved algorithm
relative to siRNA scoring algorithms previously available in the
art. (The "v3" scoring algorithm is a machine learning algorithm
that is not reliant upon any biases in human sequence. In addition,
the "v3" algorithm derives from a data set that is approximately
three-fold larger than that from which an older "v2" algorithm such
as that described in Gong et al. derives.)
[0275] The first and second oligonucleotides of the DsiRNA agents
of the instant invention are not required to be completely
complementary. In fact, in one embodiment, the 3'-terminus of the
sense strand contains one or more mismatches. In one aspect, about
two mismatches are incorporated at the 3' terminus of the sense
strand. In another embodiment, the DsiRNA of the invention is a
double stranded RNA molecule containing two RNA oligonucleotides
each of which is 27 nucleotides in length and, when annealed to
each other, have blunt ends and a two nucleotide mismatch on the
3'-terminus of the sense strand (the 5'-terminus of the antisense
strand). The use of mismatches or decreased thermodynamic stability
(specifically at the 3'-sense/5'-antisense position) has been
proposed to facilitate or favor entry of the antisense strand into
RISC (Schwarz et al., 2003, Cell 115: 199-208; Khvorova et al.,
2003, Cell 115: 209-216), presumably by affecting some
rate-limiting unwinding steps that occur with entry of the siRNA
into RISC. Thus, terminal base composition has been included in
design algorithms for selecting active 21mer siRNA duplexes (Ui-Tei
et al., 2004, Nucleic Acids Res 32: 936-948; Reynolds et al., 2004,
Nat Biotechnol 22: 326-330). With Dicer cleavage of the dsRNA of
this embodiment, the small end-terminal sequence which contains the
mismatches will either be left unpaired with the antisense strand
(become part of a 3'-overhang) or be cleaved entirely off the final
21-mer siRNA. These "mismatches", therefore, do not persist as
mismatches in the final RNA component of RISC. The finding that
base mismatches or destabilization of segments at the 3'-end of the
sense strand of Dicer substrate improved the potency of synthetic
duplexes in RNAi, presumably by facilitating processing by Dicer,
was a surprising finding of past works describing the design and
use of 25-30mer dsRNAs (also termed "DsiRNAs" herein; Rossi et al.,
U.S. Patent Application Nos. 2005/0277610, 2005/0244858 and
2007/0265220).
[0276] B. Peptides
[0277] The invention provides for compositions comprising a dsRNA
of the invention conjugated to a peptide.
[0278] Delivery Peptides
[0279] In certain embodiments the peptide of interest is a delivery
peptide as defined hereinabove.
[0280] Delivery Peptide Sequences Useful According to the
Invention
[0281] A delivery peptide useful according to the invention
increases at least one of onset of action of a dsRNA, duration of
action by the delivered dsRNA or speed of delivery of a dsRNA of
the invention, as compared to an unconjugated dsRNA. A peptide of
the invention decreases, as defined herein, the onset of action
such that there is a decrease in the lag time before a dsRNA of
interest reaches a target RNA as compared an unconjugated dsRNA. A
delivery peptide useful according to the invention increases, as
defined herein, the duration of action such that a dsRNA-peptide
conjugate inhibits a target RNA for a longer period of time, as
compared to an unconjugated dsRNA. A delivery peptide useful
according to the invention increases, as defined herein, the speed
of delivery of a dsRNA such that a dsRNA-peptide conjugate reaches
a target RNA faster than an unconjugated dsRNA.
[0282] According to the invention, an amino acid sequence of a
delivery peptide is determined and optimized for the dsRNA to be
delivered. Peptide sequences useful for delivery peptides according
to the invention are described in the literature.
[0283] In one embodiment, a delivery peptide according to the
invention comprises proline residues, for example, a sequence of
x1-P-x2-P-x3, where x1 and x3 are any amino acid or peptide segment
comprising 2 to 50 amino acids and x2 is either 0 or 1 amino acids
or peptide segments containing 2 to 20 amino acids. In another
embodiment, x1=a peptide comprising 5 amino acid residues; x2=a
peptide comprising 7 amino acid residues and x3=a peptide
comprising 4 amino acid residues. In another embodiment, x1=a
peptide comprising 8 amino acid residues; x2=a peptide comprising 7
amino acid residues and x3=a peptide comprising 4 amino acid
residues. In yet another embodiment, x1=a peptide comprising 8
amino acid residues; x2=a peptide comprising 8 amino acid residues
and x3=a peptide comprising 4 amino acid residues (Deber et al.,
Arch Biochem Biophys. 1986; 251(1):68-76; and Du et al., J Pept
Res. 1998; 51(3):235-43.)
[0284] Delivery peptide sequences useful for the invention include,
but are not limited to:
TABLE-US-00002 (SEQ ID NO: 1) VRGIITSKTKSLDKGYNKALNDL (SEQ ID NO:
2) VRGIIPFKTKSLDEGYNKALNDL (SEQ ID NO: 3) KSVKAPGI (SEQ ID NO: 4)
HKAIDGRSLYNKTLD (SEQ ID NO: 5) LRLTKNSRDDST (SEQ ID NO: 6)
KNIVSVKGIRKSI (SEQ ID NO: 7) KSVIPRKGTKAPPRL (SEQ ID NO: 8)
KPVMYKNTGKSEQ (SEQ ID NO: 9) EFVMNPANAQGHTPGTRL (SEQ ID NO: 10)
EFVMNPANAQGHTAGTRL (SEQ ID NO: 11) EFVMNAANAQGHTPGTRL (SEQ ID NO:
12) EFVMNPANAQGRHTPGTRL (SEQ ID NO: 13) NPKEFVMNPANAQGHTPGTRL (SEQ
ID NO: 14) NPKEFVMNPANAQGRHTPGTRL (SEQ ID NO: 15)
KKIIPPTNIRENLYNRTASLTDLGGEL (SEQ ID NO: 16)
CVRGIITSKTKSLDKGYNKALNDL (SEQ ID NO: 17) CVRGIIPFKTKSLDEGYNKALNDL
(SEQ ID NO: 18) CKSVKAPGI (SEQ ID NO: 19) CHKAIDGRSLYNKTLD (SEQ ID
NO: 20) CLRLTKNSRDDST (SEQ ID NO: 21) CKNIVSVKGIRKSI (SEQ ID NO:
22) CKSVIPRKGTKAPPRL (SEQ ID NO: 23) CKPVMYKNTGKSEQ (SEQ ID NO: 24)
CEFVMNPANAQGHTPGTRL (SEQ ID NO: 25) CEFVMNPANAQGHTAGTRL (SEQ ID NO:
26) CEFVMNAANAQGHTPGTRL (SEQ ID NO: 27) CEFVMNPANAQGRHTPGTRL (SEQ
ID NO: 28) CNPKEFVMNPANAQGHTPGTRL (SEQ ID NO: 29)
CNPKEFVMNPANAQGRHTPGTRL (SEQ ID NO: 30)
CKKIIPPTNIRENLYNRTASLTDLGGEL (SEQ ID NO: 31)
GVRGIITSKTKSLDKGYNKALNDL (SEQ ID NO: 32) GVRGIIPFKTKSLDEGYNKALNDL
(SEQ ID NO: 33) GKSVKAPGI (SEQ ID NO: 34) GHKAIDGRSLYNKTLD (SEQ ID
NO: 35) GLRLTKNSRDDST (SEQ ID NO: 36) GKNIVSVKGIRKSI (SEQ ID NO:
37) GKSVIPRKGTKAPPRL (SEQ ID NO: 38) GKPVMYKNTGKSEQ (SEQ ID NO: 39)
GEFVMNPANAQGHTPGTRL (SEQ ID NO: 40) GEFVMNPANAQGHTAGTRL (SEQ ID NO:
41) GEFVMNAANAQGHTPGTRL (SEQ ID NO: 42) GEFVMNPANAQGRHTPGTRL (SEQ
ID NO: 43) GNPKEFVMNPANAQGHTPGTRL (SEQ ID NO: 44)
GNPKEFVMNPANAQGRHTPGTRL (SEQ ID NO: 45)
GKKIIPPTNIRENLYNRTASLTDLGGEL (SEQ ID NO: 46)
VRGIITSKTKSLDKGYNKALNDLC (SEQ ID NO: 47) VRGIIPFKTKSLDEGYNKALNDLC
(SEQ ID NO: 48) KSVKAPGIC (SEQ ID NO: 49) HKAIDGRSLYNKTLDC (SEQ ID
NO: 50) LRLTKNSRDDSTC (SEQ ID NO: 51) KNIVSVKGIRKSIC (SEQ ID NO:
52) KSVIPRKGTKAPPRLC (SEQ ID NO: 53) KPVMYKNTGKSEQC (SEQ ID NO: 54)
EFVMNPANAQGHTPGTRLC (SEQ ID NO: 55) EFVMNPANAQGHTAGTRLC (SEQ ID NO:
56) EFVMNAANAQGHTPGTRLC (SEQ ID NO: 57) EFVMNPANAQGRHTPGTRLC (SEQ
ID NO: 58) NPKEFVMNPANAQGHTPGTRLC (SEQ ID NO: 59)
NPKEFVMNPANAQGRHTPGTRLC (SEQ ID NO: 60)
KKIIPPTNIRENLYNRTASLTDLGGELC (SEQ ID NO: 61) KSVKAPGIGGKSVKAPGI
(SEQ ID NO: 62) KSVKAPGIGGKSVKAPGIGGKSVKAPGI (SEQ ID NO: 63)
KSVKAPGIGG(KSVKAPGI).sub.2 (SEQ ID NO: 64) CKSVKAPGIGGKSVKAPGI (SEQ
ID NO: 65) CKSVKAPGIGGKSVKAPGIGGKSVKAPGI (SEQ ID NO: 66)
GLFGAIAGFIENGWEGMIDGWYG (SEQ ID NO: 67) CGLFGAIAGFIENGWEGMIDGWYG
(SEQ ID NO: 68) GLFGAIAGFIENGWEGMIDGWYGC (SEQ ID NO: 69) GRGDGG
(SEQ ID NO: 70) CRGDGG (SEQ ID NO: 71) GRGDGC (SEQ ID NO: 72)
THALWHT (SEQ ID NO: 73) GTHALWHT (SEQ ID NO: 74) THALWHTG (SEQ ID
NO: 75) CTHALWHT (SEQ ID NO: 76) THALWHTC (SEQ ID NO: 77)
QPFMQCLCLIYDASC (SEQ ID NO: 78) GQPFMQCLCLIYDASC (SEQ ID NO: 79)
QPFMQCLCLIYDASCG (SEQ ID NO: 80) RNVPPIFNDVYWIAF (SEQ ID NO: 81)
GRNVPPIFNDVYWIAF (SEQ ID NO: 82) RNVPPIFNDVYWIAFG (SEQ ID NO: 83)
CRNVPPIFNDVYWIAF (SEQ ID NO: 84)
RNVPPIFNDVYWIAFC (SEQ ID NO: 85) VFRVRPWYQSTSQS (SEQ ID NO: 86)
GVFRVRPWYQSTSQS (SEQ ID NO: 87) VFRVRPWYQSTSQSG (SEQ ID NO: 88)
CVFRVRPWYQSTSQS (SEQ ID NO: 89) VFRVRPWYQSTSQSC (SEQ ID NO: 149)
GEFVMNAANAQGHTAGTRL (SEQ ID NO: 150) TQIENLKEKG (SEQ ID NO: 151)
H2N-c[D(Cys-Ser-Lys-Cys)]Gly-Peg12-Lys (SEQ ID NO: 152)
H2N-c[Cys-Phe-Thr-Lys-D-Trp-Phe-Phe-Cys]-Peg12-Lys (SEQ ID NO: 153)
H2N-Thr-Phe-Thr-Lys-D-Trp-Phe-Phe-D-Phe-Peg12-Lys
or portions thereof.
[0285] Targeting Peptides
[0286] In other embodiments, the peptide of interest is a targeting
peptide as defined hereinabove.
[0287] According to the invention, an amino acid sequence of a
targeting peptide is determined and optimized for the dsRNA that is
conjugated to the peptide for delivery. Peptide sequences useful
for targeting peptides according to the invention are described in
the literature.
[0288] For each ligand family distinct peptide sequence patterns
are appropriate. In one embodiment, a peptide useful for targeting
the LDL-receptor according to the current invention may contain a
sequence of x1-F-x2-YGG-x3, where x1 and x3 are any amino acid or
peptide segment containing 2 to 40 amino acids, and x2 is any amino
acid. Hussain, Strickland and Bakillah, Annu Rev Nutr. 1999;
19:141-172. Hussain, Front Biosci. 2001; 6:D417-D428.
[0289] Targeting Peptides Useful According to the Invention
[0290] Targeting peptides useful according to the invention include
but are not limited to an amino acid sequence from any of the
following ligands:
[0291] 1. Parathyroid Hormone (PTH) and PTH-Related Protein
TABLE-US-00003 P01270; PTHY_HUMAN P22858; PTHR_MOUSE Q811S6;
Q811S6_MOUSE P01270; PTHY_HUMAN (SEQ ID NO: 90) MIPAKDMAKV
MIVMLAICFL TKSDGKSVKK RSVSEIQLMH NLGKHLNSME RVEWLRKKLQ DVHNFVALGA
PLAPRDAGSQ RPRKKEDNVL VESHEKSLGE ADKADVNVLT KAKSQ
[0292] 2. Thyroid Stimulating Hormone (TSH)
TABLE-US-00004 P01222; TSHB_HUMAN P12656; TSHB_MOUSE P01222;
TSHB_HUMAN (SEQ ID NO: 91) MTALFLMSML FGLACGQAMS FCIPTEYTMH
IERRECAYCL TINTTICAGY CMTRDINGKL FLPKYALSQD VCTYRDFIYR TVEIPGCPLH
VAPYFSYPVA LSCKCGKCNT DYSDCIHEAI KTNYCTKPQK SYLVGFSV
[0293] 3. TSH Releasing Hormone
TABLE-US-00005 B2R8R1; B2R8R1_HUMAN B2R8R1; B2R8R1_HUMAN (SEQ ID
NO: 92) MPGPWLLLAL ALTLNLTGVP GGRAQPEAAQ QEAVTAAEHP GLDDFLRQVE
RLLFLRENIQ RLQGDQGEHS ASQIFQSDWL SKRQHPGKRE EEEEEGVEEE EEEEGGAVGP
HKRQHPGRRE DEASWSVDVT QHKRQHPGRR SPWLAYAVPK RQHPGRRLAD PKAQRSWEEE
EEEEEREEDL MPEKRQHPGK RALGGPCGPQ GAYGQAGLLL GLLDDLSRSQ GAEEKRQHPG
RRAAWVREPL EE
[0294] 4. FSH/LH Releasing Hormone
TABLE-US-00006 P01148; GON1_HUMAN O43555; GON2_HUMAN P13562;
GON1_MOUSE P01148; GON1_HUMAN (SEQ ID NO: 93) MKPIQKLLAG LILLTWCVEG
CSSQHWSYGL RPGGKRDAEN LIDSFQEIVK EVGQLAETQR FECTTHQPRS PLRDLKGALE
SLIEEETGQK KI O43555; GON2_HUMAN (SEQ ID NO: 94) MASSRRGLLL
LLLLTAHLGP SEAQHWSHGW YPGGKRALSS AQDPQNALRP PGRALDTAAG SPVQTAHGLP
SDALAPLDDS MPWEGRTTAQ WSLHRKRHLA RTLLTAAREP RPAPPSSNKV
[0295] 5. Corticotropin Releasing Hormone (CRH)
TABLE-US-00007 P06850; CRF_HUMAN Q8CIT0; CRF_MOUSE P06850;
CRF_HUMAN (SEQ ID NO: 95) MRLPLLVSAG VLLVALLPCP PCRALLSRGP
VPGARQAPQH PQPLDFFQPP PQSEQPQQPQ ARPVLLRMGE EYFLRLGNLN KSPAAPLSPA
SSLLAGGSGS RPSPEQATAN FFRVLLQQLL LPRRSLDSPA ALAERGARNA LGGHQEAPER
ERRSEEPPIS LDLTFHLLRE VLEMARAEQL AQQAHSNRKL MEIIGK
[0296] 6. Adrenocorticotropic Hormone (ACTH)
TABLE-US-00008 P01189; COLI_HUMAN P01193; COLI_MOUSE P01189;
COLI_HUMAN (SEQ ID NO: 96) MPRSCCSRSG ALLLALLLQA SMEVRGWCLE
SSQCQDLTTE SNLLECIRAC KPDLSAETPM FPGNGDEQPL TENPRKYVMG HFRWDRFGRR
NSSSSGSSGA GQKREDVSAG EDCGPLPEGG PEPRSDGAKP GPREGKRSYS MEHFRWGKPV
GKKRRPVKVY PNGAEDESAE AFPLEFKREL TGQRLREGDG PDGPADDGAG AQADLEHSLL
VAAEKKDEGP YRMEHFRWGS PPKDKRYGGF MTSEKSQTPL VTLFKNAIIK NAYKKGE
[0297] 7. Proteinase Activated Receptor (PAR) Ligands and Thrombin
Receptor Agonists
TABLE-US-00009 P00734; THRB_HUMAN P19221; THRB_MOUSE P00734;
THRB_HUMAN (SEQ ID NO: 97) MAHVRGLQLP GCLALAALCS LVHSQHVFLA
PQQARSLLQR VRRANTFLEE VRKGNLEREC VEETCSYEEA FEALESSTAT DVFWAKYTAC
ETARTPRDKL AACLEGNCAE GLGTNYRGHV NITRSGIECQ LWRSRYPHKP EINSTTHPGA
DLQENFCRNP DSSTTGPWCY TTDPTVRRQE CSIPVCGQDQ VTVAMTPRSE GSSVNLSPPL
EQCVPDRGQQ YQGRLAVTTH GLPCLAWASA QAKALSKHQD FNSAVQLVEN FCRNPDGDEE
GVWCYVAGKP GDFGYCDLNY CEEAVEEETG DGLDEDSDRA IEGRTATSEY QTFFNPRTFG
SGEADCGLRP LFEKKSLEDK TERELLESYI DGRIVEGSDA EIGMSPWQVM LFRKSPQELL
CGASLISDRW VLTAAHCLLY PPWDKNFTEN DLLVRIGKHS RTRYERNIEK ISMLEKIYIH
PRYNWRENLD RDIALMKLKK PVAFSDYIHP VCLPDRETAA SLLQAGYKGR VTGWGNLKET
WTANVGKGQP SVLQVVNLPI VERPVCKDST RIRITDNMFC AGYKPDEGKR GDACEGDSGG
PFVMKSPFNN RWYQMGIVSW GEGCDRDGKY GFYTHVFRLK KWIQKVIDQF GE
[0298] 8. Complement Receptor Ligands
TABLE-US-00010 P01024; CO3_HUMAN P01027; CO3_MOUSE P01024;
CO3_HUMAN (SEQ ID NO: 98) MGPTSGPSLL LLLLTHLPLA LGSPMYSIIT
PNILRLESEE TMVLEAHDAQ GDVPVTVTVH DFPGKKLVLS SEKTVLTPAT NHMGNVTFTI
PANREFKSEK GRNKFVTVQA TFGTQVVEKV VLVSLQSGYL FIQTDKTIYT PGSTVLYRIF
TVNHKLLPVG RTVMVNIENP EGIPVKQDSL SSQNQLGVLP LSWDIPELVN MGQWKIRAYY
ENSPQQVFST EFEVKEYVLP SFEVIVEPTE KFYYIYNEKG LEVTITARFL YGKKVEGTAF
VIFGIQDGEQ RISLPESLKR IPIEDGSGEV VLSRKVLLDG VQNPRAEDLV GKSLYVSATV
ILHSGSDMVQ AERSGIPIVT SPYQIHFTKT PKYFKPGMPF DLMVFVTNPD GSPAYRVPVA
VQGEDTVQSL TQGDGVAKLS INTHPSQKPL SITVRTKKQE LSEAEQATRT MQALPYSTVG
NSNNYLHLSV LRTELRPGET LNVNFLLRMD RAHEAKIRYY TYLIMNKGRL LKAGRQVREP
GQDLVVLPLS ITTDFIPSFR LVAYYTLIGA SGQREVVADS VWVDVKDSCV GSLVVKSGQS
EDRQPVPGQQ MTLKIEGDHG ARVVLVAVDK GVFVLNKKNK LTQSKIWDVV EKADIGCTPG
SGKDYAGVFS DAGLTFTSSS GQQTAQRAEL QCPQPAARRR RSVQLTEKRM DKVGKYPKEL
RKCCEDGMRE NPMRFSCQRR TRFISLGEAC KKVFLDCCNY ITELRRQHAR ASHLGLARSN
LDEDIIAEEN IVSRSEFPES WLWNVEDLKE PPKNGISTKL MNIFLKDSIT TWEILAVSMS
DKKGICVADP FEVTVMQDFF IDLRLPYSVV RNEQVEIRAV LYNYRQNQEL KVRVELLHNP
AFCSLATTKR RHQQTVTIPP KSSLSVPYVI VPLKTGLQEV EVKAAVYHHF ISDGVRKSLK
VVPEGIRMNK TVAVRTLDPE RLGREGVQKE DIPPADLSDQ VPDTESETRI LLQGTPVAQM
TEDAVDAERL KHLIVTPSGC GEQNMIGMTP TVIAVHYLDE TEQWEKFGLE KRQGALELIK
KGYTQQLAFR QPSSAFAAFV KRAPSTWLTA YVVKVFSLAV NLIAIDSQVL CGAVKWLILE
KQKPDGVFQE DAPVIHQEMI GGLRNNNEKD MALTAFVLIS LQEAKDICEE QVNSLPGSIT
KAGDFLEANY MNLQRSYTVA IAGYALAQMG RLKGPLLNKF LTTAKDKNRW EDPGKQLYNV
EATSYALLAL LQLKDFDFVP PVVRWLNEQR YYGGGYGSTQ ATFMVFQALA QYQKDAPDHQ
ELNLDVSLQL PSRSSKITHR IHWESASLLR SEETKENEGF TVTAEGKGQG TLSVVTMYHA
KAKDQLTCNK FDLKVTIKPA PETEKRPQDA KNTMILEICT RYRGDQDATM SILDISMMTG
FAPDTDDLKQ LANGVDRYIS KYELDKAFSD RNTLIIYLDK VSHSEDDCLA FKVHQYFNVE
LIQPGAVKVY AYYNLEESCT RFYHPEKEDG KLNKLCRDEL CRCAEENCFI QKSDDKVTLE
ERLDKACEPG VDYVYKTRLV KVQLSNDFDE YIMAIEQTIK SGSDEVQVGQ QRTFISPIKC
REALKLEEKK HYLMWGLSSD FWGEKPNLSY IIGKDTWVEH WPEEDECQDE ENQKQCQDLG
AFTESMVVFG CPN P0C0L5; CO4B_HUMAN (SEQ ID NO: 99) MRLLWGLIWA
SSFFTLSLQK PRLLLFSPSV VHLGVPLSVG VQLQDVPRGQ VVKGSVFLRN PSRNNVPCSP
KVDFTLSSER DFALLSLQVP LKDAKSCGLH QLLRGPEVQL VAHSPWLKDS LSRTTNIQGI
NLLFSSRRGH LFLQTDQPIY NPGQRVRYRV FALDQKMRPS TDTITVMVEN SHGLRVRKKE
VYMPSSIFQD DFVIPDISEP GTWKISARFS DGLESNSSTQ FEVKKYVLPN FEVKITPGKP
YILTVPGHLD EMQLDIQARY IYGKPVQGVA YVRFGLLDED GKKTFFRGLE SQTKLVNGQS
HISLSKAEFQ DALEKLNMGI TDLQGLRLYV AAAIIESPGG EMEEAELTSW YFVSSPFSLD
LSKTKRHLVP GAPFLLQALV REMSGSPASG IPVKVSATVS SPGSVPEVQD IQQNTDGSGQ
VSIPIIIPQT ISELQLSVSA GSPHPAIARL TVAAPPSGGP GFLSIERPDS RPPRVGDTLN
LNLRAVGSGA TFSHYYYMIL SRGQIVFMNR EPKRTLTSVS VFVDHHLAPS FYFVAFYYHG
DHPVANSLRV DVQAGACEGK LELSVDGAKQ YRNGESVKLH LETDSLALVA LGALDTALYA
AGSKSHKPLN MGKVFEAMNS YDLGCGPGGG DSALQVFQAA GLAFSDGDQW TLSRKRLSCP
KEKTTRKKRN VNFQKAINEK LGQYASPTAK RCCQDGVTRL PMMRSCEQRA ARVQQPDCRE
PFLSCCQFAE SLRKKSRDKG QAGLQRALEI LQEEDLIDED DIPVRSFFPE NWLWRVETVD
RFQILTLWLP DSLTTWEIHG LSLSKTKGLC VATPVQLRVF REFHLHLRLP MSVRRFEQLE
LRPVLYNYLD KNLTVSVHVS PVEGLCLAGG GGLAQQVLVP AGSARPVAFS VVPTAAAAVS
LKVVARGSFE FPVGDAVSKV LQIEKEGAIH REELVYELNP LDHRGRTLEI PGNSDPNMIP
DGDFNSYVRV TASDPLDTLG SEGALSPGGV ASLLRLPRGC GEQTMIYLAP TLAASRYLDK
TEQWSTLPPE TKDHAVDLIQ KGYMRIQQFR KADGSYAAWL SRDSSTWLTA FVLKVLSLAQ
EQVGGSPEKL QETSNWLLSQ QQADGSFQDL SPVIHRSMQG GLVGNDETVA LTAFVTIALH
HGLAVFQDEG AEPLKQRVEA SISKANSFLG EKASAGLLGA HAAAITAYAL SLTKAPVDLL
GVAHNNLMAM AQETGDNLYW GSVTGSQSNA VSPTPAPRNP SDPMPQAPAL WIETTAYALL
HLLLHEGKAE MADQASAWLT RQGSFQGGFR STQDTVIALD ALSAYWIASH TTEERGLNVT
LSSTGRNGFK SHALQLNNRQ IRGLEEELQF SLGSKINVKV GGNSKGTLKV LRTYNVLDMK
NTTCQDLQIE VTVKGHVEYT MEANEDYEDY EYDELPAKDD PDAPLQPVTP LQLFEGRRNR
RRREAPKVVE EQESRVHYTV CIWRNGKVGL SGMAIADVTL LSGFHALRAD LEKLTSLSDR
YVSHFETEGP HVLLYFDSVP TSRECVGFEA VQEVPVGLVQ PASATLYDYY NPERRCSVFY
GAPSKSRLLA TLCSAEVCQC AEGKCPRQRR ALERGLQDED GYRMKFACYY PRVEYGFQVK
VLREDSRAAF RLFETKITQV LHFTKDVKAA ANQMRNFLVR ASCRLRLEPG KEYLIMGLDG
ATYDLEGHPQ YLLDSNSWIE EMPSERLCRS TRQRAACAQL NDFLQEYGTQ GCQV
[0299] 9. Ligands for LDL Receptor Family
TABLE-US-00011 P05067; A4_HUMAN P12023; A4_MOUSE P05067; A4_HUMAN
(SEQ ID NO: 100) MLPGLALLLL AAWTARALEV PTDGNAGLLA EPQIAMFCGR
LNMHMNVQNG KWDSDPSGTK TCIDTKEGIL QYCQEVYPEL QITNVVEANQ PVTIQNWCKR
GRKQCKTHPH FVIPYRCLVG EFVSDALLVP DKCKFLHQER MDVCETHLHW HTVAKETCSE
KSTNLHDYGM LLPCGIDKFR GVEFVCCPLA EESDNVDSAD AEEDDSDVWW GGADTDYADG
SEDKVVEVAE EEEVAEVEEE EADDDEDDED GDEVEEEAEE PYEEATERTT SIATTTTTTT
ESVEEVVREV CSEQAETGPC RAMISRWYFD VTEGKCAPFF YGGCGGNRNN FDTEEYCMAV
CGSAMSQSLL KTTQEPLARD PVKLPTTAAS TPDAVDKYLE TPGDENEHAH FQKAKERLEA
KHRERMSQVM REWEEAERQA KNLPKADKKA VIQHFQEKVE SLEQEAANER QQLVETHMAR
VEAMLNDRRR LALENYITAL QAVPPRPRHV FNMLKKYVRA EQKDRQHTLK HFEHVRMVDP
KKAAQIRSQV MTHLRVIYER MNQSLSLLYN VPAVAEEIQD EVDELLQKEQ NYSDDVLANM
ISEPRISYGN DALMPSLTET KTTVELLPVN GEFSLDDLQP WHSFGADSVP ANTENEVEPV
DARPAADRGL TTRPGSGLTN IKTEEISEVK MDAEFRHDSG YEVHHQKLVF FAEDVGSNKG
AIIGLMVGGV VIATVIVITL VMLKKKQYTS IHHGVVEVDA AVTPEERHLS KMQQNGYENP
TYKFFEQMQN
[0300] 10. Endocrine and Exocrine Receptor Ligands
TABLE-US-00012 P01241; SOMA_HUMAN P06880; SOMA_MOUSE Q9UBU3;
GHRL_HUMAN Q9EQX0; GHRL_MOUSE P01241; SOMA_HUMAN (SEQ ID NO: 101)
MATGSRTSLL LAFGLLCLPW LQEGSAFPTI PLSRLFDNAM LRAHRLHQLA FDTYQEFEEA
YIPKEQKYSF LQNPQTSLCF SESIPTPSNR EETQQKSNLE LLRISLLLIQ SWLEPVQFLR
SVFANSLVYG ASDSNVYDLL KDLEEGIQTL MGRLEDGSPR TGQIFKQTYS KFDTNSHNDD
ALLKNYGLLY CFRKDMDKVE TFLRIVQCRS VEGSCGF Q9UBU3; GHRL_HUMAN (SEQ ID
NO: 102) MPSPGTVCSL LLLGMLWLDL AMAGSSFLSP EHQRVQQRKE SKKPPAKLQP
RALAGWLRPE DGGQAEGAED ELEVRFNAPF DVGIKLSGVQ YQQHSQALGK FLQDILWEEA
KEAPADK
[0301] 11. Transforming Growth Factor Ligands
TABLE-US-00013 P01137; TGFB1_HUMAN P04202; TGFB1_MOUSE P01137;
TGFB1_HUMAN (SEQ ID NO: 103) MPPSGLRLLL LLLPLLWLLV LTPGRPAAGL
STCKTIDMEL VKRKRIEAIR GQILSKLRLA SPPSQGEVPP GPLPEAVLAL YNSTRDRVAG
ESAEPEPEPE ADYYAKEVTR VLMVETHNEI YDKFKQSTHS IYMFFNTSEL REAVPEPVLL
SRAELRLLRL KLKVEQHVEL YQKYSNNSWR YLSNRLLAPS DSPEWLSFDV TGVVRQWLSR
GGEIEGFRLS AHCSCDSRDN TLQVDINGFT TGRRGDLATI HGMNRPFLLL MATPLERAQH
LQSSRHRRAL DTNYCFSSTE KNCCVRQLYI DFRKDLGWKW IHEPKGYHAN FCLGPCPYIW
SLDTQYSKVL ALYNQHNPGA SAAPCCVPQA LEPLPIVYYV GRKPKVEQLS
NMIVRSCKCS
[0302] 12. Chemokine Receptor Ligands
TABLE-US-00014 P13500; CCL2_HUMAN P10148; CCL2_MOUSE P13500;
CCL2_HUMAN (SEQ ID NO: 104) MKVSAALLCL LLIAATFIPQ GLAQPDAINA
PVTCCYNFTN RKISVQRLAS YRRITSSKCP KEAVIFKTIV AKEICADPKQ KWVQDSMDHL
DKQTQTPKT
[0303] 13. Integrins
TABLE-US-00015 P05556; ITB1_HUMAN P09055; ITB1_MOUSE P05556;
ITB1_HUMAN (SEQ ID NO: 105) MNLQPIFWIG LISSVCCVFA QTDENRCLKA
NAKSCGECIQ AGPNCGWCTN STFLQEGMPT SARCDDLEAL KKKGCPPDDI ENPRGSKDIK
KNKNVTNRSK GTAEKLKPED ITQIQPQQLV LRLRSGEPQT FTLKFKRAED YPIDLYYLMD
LSYSMKDDLE NVKSLGTDLM NEMRRITSDF RIGFGSFVEK TVMPYISTTP AKLRNPCTSE
QNCTSPFSYK NVLSLTNKGE VFNELVGKQR ISGNLDSPEG GFDAIMQVAV CGSLIGWRNV
TRLLVFSTDA GFHFAGDGKL GGIVLPNDGQ CHLENNMYTM SHYYDYPSIA HLVQKLSENN
IQTIFAVTEE FQPVYKELKN LIPKSAVGTL SANSSNVIQL IIDAYNSLSS EVILENGKLS
EGVTISYKSY CKNGVNGTGE NGRKCSNISI GDEVQFEISI TSNKCPKKDS DSFKIRPLGF
TEEVEVILQY ICECECQSEG IPESPKCHEG NGTFECGACR CNEGRVGRHC ECSTDEVNSE
DMDAYCRKEN SSEICSNNGE CVCGQCVCRK RDNTNEIYSG KFCECDNFNC DRSNGLICGG
NGVCKCRVCE CNPNYTGSAC DCSLDTSTCE ASNGQICNGR GICECGVCKC TDPKFQGQTC
EMCQTCLGVC AEHKECVQCR AFNKGEKKDT CTQECSYFNI TKVESRDKLP QPVQPDPVSH
CKEKDVDDCW FYFTYSVNGN NEVMVHVVEN PECPTGPDII PIVAGVVAGI VLIGLALLLI
WKLLMIIHDR REFAKFEKEK MNAKWDTGEN PIYKSAVTTV VNPKYEGK
[0304] 14. Interleukins
TABLE-US-00016 Q13169; Q13169_HUMAN Q0PGS4; Q0PGS4_MOUSE Q13169;
Q13169_HUMAN (SEQ ID NO: 106) MYRMQLLSCI ALILALVTNS APTSSSTKKT
KKTQLQLEHL LLDLQMILNG INNYKNPKLT RMLTFKFYMP KKATELKQLQ CLEEELKPLE
EVLNLAQSKN FHLRPRDLIS NINVIVLELK GSETTFMCEY ADETATIVEF LNRWITFCQS
IISTLT
[0305] 15. Differentiation Factors Like Bone Differentiation
Factors
TABLE-US-00017 P13497; BMP1_HUMAN P98063; BMP1_MOUSE P13497;
BMP1_HUMAN (SEQ ID NO: 107) MPGVARLPLL LGLLLLPRPG RPLDLADYTY
DLAEEDDSEP LNYKDPCKAA AFLGDIALDE EDLRAFQVQQ AVDLRRHTAR KSSIKAAVPG
NTSTPSCQST NGQPQRGACG RWRGRSRSRR AATSRPERVW PDGVIPFVIG GNFTGSQRAV
FRQAMRHWEK HTCVTFLERT DEDSYIVFTY RPCGCCSYVG RRGGGPQAIS IGKNCDKFGI
VVHELGHVVG FWHEHTRPDR DRHVSIVREN IQPGQEYNFL KMEPQEVESL GETYDFDSIM
HYARNTFSRG IFLDTIVPKY EVNGVKPPIG QRTRLSKGDI AQARKLYKCP ACGETLQDST
GNFSSPEYPN GYSAHMHCVW RISVTPGEKI ILNFTSLDLY RSRLCWYDYV EVRDGFWRKA
PLRGRFCGSK LPEPIVSTDS RLWVEFRSSS NWVGKGFFAV YEAICGGDVK KDYGHIQSPN
YPDDYRPSKV CIWRIQVSEG FHVGLTFQSF EIERHDSCAY DYLEVRDGHS ESSTLIGRYC
GYEKPDDIKS TSSRLWLKFV SDGSINKAGF AVNFFKEVDE CSRPNRGGCE QRCLNTLGSY
KCSCDPGYEL APDKRRCEAA CGGFLTKLNG SITSPGWPKE YPPNKNCIWQ LVAPTQYRIS
LQFDFFETEG NDVCKYDFVE VRSGLTADSK LHGKFCGSEK PEVITSQYNN MRVEFKSDNT
VSKKGFKAHF FSDKDECSKD NGGCQQDCVN TFGSYECQCR SGFVLHDNKH DCKEAGCDHK
VTSTSGTITS PNWPDKYPSK KECTWAISST PGHRVKLTFM EMDIESQPEC AYDHLEVFDG
RDAKAPVLGR FCGSKKPEPV LATGSRMFLR FYSDNSVQRK GFQASHATEC GGQVRADVKT
KDLYSHAQFG DNNYPGGVDC EWVIVAEEGY GVELVFQTFE VEEETDCGYD YMELFDGYDS
TAPRLGRYCG SGPPEEVYSA GDSVLVKFHS DDTITKKGFH LRYTSTKFQD TLHSRK
[0306] 16. Gastrin-Releasing Peptide
TABLE-US-00018 P07492; GRP_HUMAN Q8R1I2; GRP_MOUSE P07492;
GRP_HUMAN (SEQ ID NO: 108) MRGSELPLVL LALVLCLAPR GRAVPLPAGG
GTVLTKMYPR GNHWAVGHLM GKKSTGESSS VSERGSLKQQ LREYIRWEEA ARNLLGLIEA
KENRNHQPPQ PKALGNQQPS WDSEDSSNFK DVGSKGKVGR LSAPGSQREG RNPQLNQQ
[0307] 17. Vasoactive Intestinal Peptide (VIP)
TABLE-US-00019 P01282; VIP_HUMAN P32648; VIP_MOUSE P01282;
VIP_HUMAN (SEQ ID NO: 109) MDTRNKAQLL VLLTLLSVLF SQTSAWPLYR
APSALRLGDR IPFEGANEPD QVSLKEDIDM LQNALAENDT PYYDVSRNAR HADGVFTSDF
SKLLGQLSAK KYLESLMGKR VSSNISEDPV PVKRHSDAVF TDNYTRLRKQ MAVKKYLNSI
LNGKRSSEGE SPDFPEELEK
[0308] 18. Insulin and Insulin-Like Growth Factor
TABLE-US-00020 P01308; INS_HUMAN P01343; IGF1A_HUMAN P05019;
IGF1B_HUMAN P05017; IGF1_MOUSE P01308; INS_HUMAN (SEQ ID NO: 110)
MALWMRLLPL LALLALWGPD PAAAFVNQHL CGSHLVEALY LVCGERGFFY TPKTRREAED
LQVGQVELGG GPGAGSLQPL ALEGSLQKRG IVEQCCTSIC SLYQLENYCN P01343;
IGF1A_HUMAN (SEQ ID NO: 111) MGKISSLPTQ LFKCCFCDFL KVKMHTMSSS
HLFYLALCLL TFTSSATAGP ETLCGAELVD ALQFVCGDRG FYFNKPTGYG SSSRRAPQTG
IVDECCFRSC DLRRLEMYCA PLKPAKSARS VRAQRHTDMP KTQKEVHLKN ASRGSAGNKN
YRM P05019; IGF1B_HUMAN (SEQ ID NO: 112) MGKISSLPTQ LFKCCFCDFL
KVKMHTMSSS HLFYLALCLL TFTSSATAGP ETLCGAELVD ALQFVCGDRG FYFNKPTGYG
SSSRRAPQTG IVDECCFRSC DLRRLEMYCA PLKPAKSARS VRAQRHTDMP KTQKYQPPST
NKNTKSQRRK GWPKTHPGGE QKEGTEASLQ IRGKKKEQRR EIGSRNAECR GKKGK
[0309] 19. Calcitonin and Calcitonin Gene-Related Peptide
TABLE-US-00021 P01258; CALC_HUMAN P70160; CALC_MOUSE P01258;
CALC_HUMAN (SEQ ID NO: 113) MGFQKFSPFL ALSILVLLQA GSLHAAPFRS
ALESSPADPA TLSEDEARLL LAALVQDYVQ MKASELEQEQ EREGSSLDSP RSKRCGNLST
CMLGTYTQDF NKFHTFPQTA IGVGAPGKKR DMSSDLERDH RPHVSMPQNA N
[0310] 20. Ligands to inflammatory cells like mast cells,
eosinophils, macrophage, Monocytes, and Neutrophils
TABLE-US-00022 P09603; CSF1_HUMAN P07141; CSF1_MOUSE P0C0L5;
CO4B_HUMAN P01029; CO4B_MOUSE P09603; CSF1_HUMAN (SEQ ID NO: 114)
MTAPGAAGRC PPTTWLGSLL LLVCLLASRS ITEEVSEYCS HMIGSGHLQS LQRLIDSQME
TSCQITFEFV DQEQLKDPVC YLKKAFLLVQ DIMEDTMRFR DNTPNAIAIV QLQELSLRLK
SCFTKDYEEH DKACVRTFYE TPLQLLEKVK NVFNETKNLL DKDWNIFSKN CNNSFAECSS
QDVVTKPDCN CLYPKAIPSS DPASVSPHQP LAPSMAPVAG LTWEDSEGTE GSSLLPGEQP
LHTVDPGSAK QRPPRSTCQS FEPPETPVVK DSTIGGSPQP RPSVGAFNPG MEDILDSAMG
TNWVPEEASG EASEIPVPQG TELSPSRPGG GSMQTEPARP SNFLSASSPL PASAKGQQPA
DVTGTALPRV GPVRPTGQDW NHTPQKTDHP SALLRDPPEP GSPRISSLRP QGLSNPSTLS
AQPQLSRSHS SGSVLPLGEL EGRRSTRDRR SPAEPEGGPA SEGAARPLPR FNSVPLTDTG
HERQSEGSSS PQLQESVFHL LVPSVILVLL AVGGLLFYRW RRRSHQEPQR ADSPLEQPEG
SPLTQDDRQV ELPV
[0311] Additional targeting peptides useful according to the
invention include but are not limited to the following:
TABLE-US-00023 GTFVYGGCRAKRNNFKSAED (SEQ ID NO: 115)
GPFFYGGCGGNRNNFDTEEY (SEQ ID NO: 116) GTFFYGGCRGKRNNFKTEEY (SEQ ID
NO: 117) GTFFYGGSRGKRNNFKTEEY (SEQ ID NO: 118) GRFFYGGSRGKRNNFRTEEY
(SEQ ID NO: 119) GTFFYGGSRGRRNNFRTEEY (SEQ ID NO: 120)
CTFVYGGCRAKRNNFKSAED (SEQ ID NO: 121) CPFFYGGCGGNRNNFDTEEY (SEQ ID
NO: 122) CTFFYGGCRGKRNNFKTEEY (SEQ ID NO: 123) CTFFYGGSRGKRNNFKTEEY
(SEQ ID NO: 124) CRFFYGGSRGKRNNFRTEEY (SEQ ID NO: 125)
CTFFYGGSRGRRNNFRTEEY (SEQ ID NO: 126) TFVYGGCRAKRNNFKSAEDG (SEQ ID
NO: 127) PFFYGGCGGNRNNFDTEEYG (SEQ ID NO: 128) TFFYGGCRGKRNNFKTEEYG
(SEQ ID NO: 129) TFFYGGSRGKRNNFKTEEYG (SEQ ID NO: 130)
RFFYGGSRGKRNNFRTEEYG (SEQ ID NO: 131) TFFYGGSRGRRNNFRTEEYG (SEQ ID
NO: 132) TFVYGGCRAKRNNFKSAEDC (SEQ ID NO: 133) PFFYGGCGGNRNNFDTEEYC
(SEQ ID NO: 134) TFFYGGCRGKRNNFKTEEYC (SEQ ID NO: 135)
TFFYGGSRGKRNNFKTEEYC (SEQ ID NO: 136) RFFYGGSRGKRNNFRTEEYC (SEQ ID
NO: 137) TFFYGGSRGRRNNFRTEEYC (SEQ ID NO: 138)
[0312] In one embodiment, a peptide of the invention is conjugated
to a translocation domain, for example a translocation domain of a
neurotoxin. Neurotoxin translocation domain peptide sequences that
are useful according to the invention include but are not limited
the following. Peptides sequences are chosen from any subunit
within the sequence. Peptide segments based on the sequences that
meet the specifications of the invention are chosen.
[0313] 1. Botulinum Neurotoxin Type A (BoNT/A) (EC 3.4.24.69)
(Bontoxilysin-A)
TABLE-US-00024 P10845; BXA1_CLOBO (SEQ ID NO: 139) MPFVNKQFNY
KDPVNGVDIA YIKIPNVGQM QPVKAFKIHN KIWVIPERDT FTNPEEGDLN PPPEAKQVPV
SYYDSTYLST DNEKDNYLKG VTKLFERIYS TDLGRMLLTS IVRGIPFWGG STIDTELKVI
DTNCINVIQP DGSYRSEELN LVIIGPSADI IQFECKSFGH EVLNLTRNGY GSTQYIRFSP
DFTFGFEESL EVDTNPLLGA GKFATDPAVT LAHELIHAGH RLYGIAINPN RVFKVNTNAY
YEMSGLEVSF EELRTFGGHD AKFIDSLQEN EFRLYYYNKF KDIASTLNKA KSIVGTTASL
QYMKNVFKEK YLLSEDTSGK FSVDKLKFDK LYKMLTEIYT EDNFVKFFKV LNRKTYLNFD
KAVFKINIVP KVNYTIYDGF NLRNTNLAAN FNGQNTEINN MNFTKLKNFT GLFEFYKLLC
VRGIITSKTK SLDKGYNKAL NDLCIKVNNW DLFFSPSEDN FTNDLNKGEE ITSDTNIEAA
EENISLDLIQ QYYLTFNFDN EPENISIENL SSDIIGQLEL MPNIERFPNG KKYELDKYTM
FHYLRAQEFE HGKSRIALTN SVNEALLNPS RVYTFFSSDY VKKVNKATEA AMFLGWVEQL
VYDFTDETSE VSTTDKIADI TIIIPYIGPA LNIGNMLYKD DFVGALIFSG AVILLEFIPE
IAIPVLGTFA LVSYIANKVL TVQTIDNALS KRNEKWDEVY KYIVTNWLAK VNTQIDLIRK
KMKEALENQA EATKAIINYQ YNQYTEEEKN NINFNIDDLS SKLNESINKA MININKFLNQ
CSVSYLMNSM IPYGVKRLED FDASLKDALL KYIYDNRGTL IGQVDRLKDK VNNTLSTDIP
FQLSKYVDNQ RLLSTFTEYI KNIINTSILN LRYESNHLID LSRYASKINI GSKVNFDPID
KNQIQLFNLE SSKIEVILKN AIVYNSMYEN FSTSFWIRIP KYFNSISLNN EYTIINCMEN
NSGWKVSLNY GEIIWTLQDT QEIKQRVVFK YSQMINISDY INRWIFVTIT NNRLNNSKIY
INGRLIDQKP ISNLGNIHAS NNIMFKLDGC RDTHRYIWIK YFNLFDKELN EKEIKDLYDN
QSNSGILKDF WGDYLQYDKP YYMLNLYDPN KYVDVNNVGI RGYMYLKGPR GSVMTTNIYL
NSSLYRGTKF IIKKYASGNK DNIVRNNDRV YINVVVKNKE YRLATNASQA GVEKILSALE
IPDVGNLSQV VVMKSKNDQG ITNKCKMNLQ DNNGNDIGFI GFHQFNNIAK LVASNWYNRQ
IERSSRTLGC SWEFIPVDDG WGERPL
[0314] 2. Botulinum Neurotoxin Type B (BoNT/B) (EC 3.4.24.69)
(Bontoxilysin-B)
TABLE-US-00025 B1INP5; BXB_CLOBK (SEQ ID NO: 140) MPVTINNFNY
NDPIDNNNII MMEPPFARGT GRYYKAFKIT DRIWIIPERY TFGYKPEDFN KSSGIFNRDV
CEYYDPDYLN TNDKKNIFLQ TMIKLFNRIK SKPLGEKLLE MIINGIPYLG DRRVPLEEFN
TNIASVTVNK LISNPGEVER KKGIFANLII FGPGPVLNEN ETIDIGIQNH FASREGFGGI
MQMKFCPEYV SVFNNVQENK GASIFNRRGY FSDPALILMH ELIHVLHGLY GIKVDDLPIV
PNEKKFFMQS TDAIQAEELY TFGGQDPSII TPSTDKSIYD KVLQNFRGIV DRLNKVLVCI
SDPNININIY KNKFKDKYKF VEDSEGKYSI DVESFDKLYK SLMFGFTETN IAENYKIKTR
ASYFSDSLPP VKIKNLLDNE IYTIEEGFNI SDKDMEKEYR GQNKAINKQA YEEISKEHLA
VYKIQMCKSV KAPGICIDVD NEDLFFIADK NSFSDDLSKN ERIEYNTQSN YIENDFPINE
LILDTDLISK IELPSENTES LTDFNVDVPV YEKQPAIKKI FTDENTIFQY LYSQTFPLDI
RDISLTSSFD DALLFSNKVY SFFSMDYIKT ANKVVEAGLF AGWVKQIVND FVIEANKSNT
MDKIADISLI VPYIGLALNV GNETAKGNFE NAFEIAGASI LLEFIPELLI PVVGAFLLES
YIDNKNKIIK TIDNALTKRN EKWSDMYGLI VAQWLSTVNT QFYTIKEGMY KALNYQAQAL
EEIIKYRYNI YSEKEKSNIN IDFNDINSKL NEGINQAIDN INNFINGCSV SYLMKKMIPL
AVEKLLDFDN TLKKNLLNYI DENKLYLIGS AEYEKSKVNK YLKTIMPFDL SIYTNDTILI
EMFNKYNSEI LNNIILNLRY KDNNLIDLSG YGAKVEVYDG VELNDKNQFK LTSSANSKIR
VTQNQNIIFN SVFLDFSVSF WIRIPKYKND GIQNYIHNEY TIINCMKNNS GWKISIRGNR
IIWTLIDING KTKSVFFEYN IREDISEYIN RWFFVTITNN LNNAKIYING KLESNTDIKD
IREVIANGEI IFKLDGDIDR TQFIWMKYFS IFNTELSQSN IEERYKIQSY SEYLKDFWGN
PLMYNKEYYM FNAGNKNSYI KLKKDSPVGE ILTRSKYNQN SKYINYRDLY IGEKFIIRRK
SNSQSINDDI VRKEDYIYLD FFNLNQEWRV YTYKYFKKEE EKLFLAPISD SDEFYNTIQI
KEYDEQPTYS CQLLFKKDEE STDEIGLIGI HRFYESGIVF EEYKDYFCIS KWYLKEVKRK
PYNLKLGCNW QFIPKDEGWT E
[0315] 3. Botulinum Neurotoxin Type C1 (BoNT/C1) (EC 3.4.24.69)
(Bontoxilysin-C1)
TABLE-US-00026 P18640; BXC1_CLOBO (SEQ ID NO: 141) MPITINNFNY
SDPVDNKNIL YLDTHLNTLA NEPEKAFRIT GNIWVIPDRF SRNSNPNLNK PPRVTSPKSG
YYDPNYLSTD SDKDPFLKEI IKLFKRINSR EIGEELIYRL STDIPFPGNN NTPINTFDFD
VDFNSVDVKT RQGNNWVKTG SINPSVIITG PRENIIDPET STFKLTNNTF AAQEGFGALS
IISISPRFML TYSNATNDVG EGRFSKSEFC MDPILILMHE LNHAMHNLYG IAIPNDQTIS
SVTSNIFYSQ YNVKLEYAEI YAFGGPTIDL IPKSARKYFE EKALDYYRSI AKRLNSITTA
NPSSFNKYIG EYKQKLIRKY RFVVESSGEV TVNRNKFVEL YNELTQIFTE FNYAKIYNVQ
NRKIYLSNVY TPVTANILDD NVYDIQNGFN IPKSNLNVLF MGQNLSRNPA LRKVNPENML
YLFTKFCHKA IDGRSLYNKT LDCRELLVKN TDLPFIGDIS DVKTDIFLRK DINEETEVIY
YPDNVSVDQV ILSKNTSEHG QLDLLYPSID SESEILPGEN QVFYDNRTQN VDYLNSYYYL
ESQKLSDNVE DFTFTRSIEE ALDNSAKVYT YFPTLANKVN AGVQGGLFLM WANDVVEDFT
TNILRKDTLD KISDVSAIIP YIGPALNISN SVRRGNFTEA FAVTGVTILL EAFPEFTIPA
LGAFVIYSKV QERNEIIKTI DNCLEQRIKR WKDSYEWMMG TWLSRIITQF NNISYQMYDS
LNYQAGAIKA KIDLEYKKYS GSDKENIKSQ VENLKNSLDV KISEAMNNIN KFIRECSVTY
LFKNMLPKVI DELNEFDRNT KAKLINLIDS HNIILVGEVD KLKAKVNNSF QNTIPFNIFS
YTNNSLLKDI INEYFNNIND SKILSLQNRK NTLVDTSGYN AEVSEEGDVQ LNPIFPFDFK
LGSSGEDRGK VIVTQNENIV YNSMYESFSI SFWIRINKWV SNLPGYTIID SVKNNSGWSI
GIISNFLVFT LKQNEDSEQS INFSYDISNN APGYNKWFFV TVTNNMMGNM KIYINGKLID
TIKVKELTGI NFSKTITFEI NKIPDTGLIT SDSDNINMWI RDFYIFAKEL DGKDINILFN
SLQYTNVVKD YWGNDLRYNK EYYMVNIDYL NRYMYANSRQ IVFNTRRNNN DFNEGYKIII
KRIRGNTNDT RVRGGDILYF DMTINNKAYN LFMKNETMYA DNHSTEDIYA IGLREQTKDI
NDNIIFQIQP MNNTYYYASQ IFKSNFNGEN ISGICSIGTY RFRLGGDWYR HNYLVPTVKQ
GNYASLLEST STHWGFVPVS E
[0316] 4. Botulinum Neurotoxin Type D (BoNT/D) (EC 3.4.24.69)
(Bontoxilysin-D)
TABLE-US-00027 P19321; BXD_CLOBO (SEQ ID NO: 142) MTWPVKDFNY
SDPVNDNDIL YLRIPQNKLI TTPVKAFMIT QNIWVIPERF SSDTNPSLSK PPRPTSKYQS
YYDPSYLSTD EQKDTFLKGI IKLFKRINER DIGKKLINYL VVGSPFMGDS STPEDTFDFT
RHTTNIAVEK FENGSWKVTN IITPSVLIFG PLPNILDYTA SLTLQGQQSN PSFEGFGTLS
ILKVAPEFLL TFSDVTSNQS SAVLGKSIFC MDPVIALMHE LTHSLHQLYG INIPSDKRIR
PQVSEGFFSQ DGPNVQFEEL YTFGGLDVEI IPQIERSQLR EKALGHYKDI AKRLNNINKT
IPSSWISNID KYKKIFSEKY NFDKDNTGNF VVNIDKFNSL YSDLTNVMSE VVYSSQYNVK
NRTHYFSRHY LPVFANILDD NIYTIRDGFN LTNKGFNIEN SGQNIERNPA LQKLSSESVV
DLFTKVCLRL TKNSRDDSTC IKVKNNRLPY VADKDSISQE IFENKIITDE TNVQNYSDKF
SLDESILDGQ VPINPEIVDP LLPNVNMEPL NLPGEEIVFY DDITKYVDYL NSYYYLESQK
LSNNVENITL TTSVEEALGY SNKIYTFLPS LAEKVNKGVQ AGLFLNWANE VVEDFTTNIM
KKDTLDKISD VSVIIPYIGP ALNIGNSALR GNFNQAFATA GVAFLLEGFP EFTIPALGVF
TFYSSIQERE KIIKTIENCL EQRVKRWKDS YQWMVSNWLS RITTQFNHIN YQMYDSLSYQ
ADAIKAKIDL EYKKYSGSDK ENIKSQVENL KNSLDVKISE AMNNINKFIR ECSVTYLFKN
MLPKVIDELN KFDLRTKTEL INLIDSHNII LVGEVDRLKA KVNESFENTM PFNIFSYTNN
SLLKDIINEY FNSINDSKIL SLQNKKNALV DTSGYNAEVR VGDNVQLNTI YTNDFKLSSS
GDKIIVNLNN NILYSAIYEN SSVSFWIKIS KDLTNSHNEY TIINSIEQNS GWKLCIRNGN
IEWILQDVNR KYKSLIFDYS ESLSHTGYTN KWFFVTITNN IMGYMKLYIN GELKQSQKIE
DLDEVKLDKT IVFGIDENID ENQMLWIRDF NIFSKELSNE DINIVYEGQI LRNVIKDYWG
NPLKFDTEYY IINDNYIDRY IAPESNVLVL VQYPDRSKLY TGNPITIKSV SDKNPYSRIL
NGDNIILHML YNSRKYMIIR DTDTIYATQG GECSQNCVYA LKLQSNLGNY GIGIFSIKNI
VSKNKYCSQI FSSFRENTML LADIYKPWRF SFKNAYTPVA VTNYETKLLS TSSFWKFISR
DPGWVE
[0317] 5. Botulinum Neurotoxin Type E (BoNT/E) (EC 3.4.24.69)
(Bontoxilysin-E)
TABLE-US-00028 Q00496; BXE_CLOBO (SEQ ID NO: 143) MPKINSFNYN
DPVNDRTILY IKPGGCQEFY KSFNIMKNIW IIPERNVIGT TPQDFHPPTS LKNGDSSYYD
PNYLQSDEEK DRFLKIVTKI FNRINNNLSG GILLEELSKA NPYLGNDNTP DNQFHIGDAS
AVEIKFSNGS QDILLPNVII MGAEPDLFET NSSNISLRNN YMPSNHRFGS IAIVTFSPEY
SFRFNDNCMN EFIQDPALTL MHELIHSLHG LYGAKGITTK YTITQKQNPL ITNIRGTNIE
EFLTFGGTDL NIITSAQSND IYTNLLADYK KIASKLSKVQ VSNPLLNPYK DVFEAKYGLD
KDASGIYSVN INKFNDIFKK LYSFTEFDLR TKFQVKCRQT YIGQYKYFKL SNLLNDSIYN
ISEGYNINNL KVNFRGQNAN LNPRIITPIT GRGLVKKIIR FCKNIVSVKG IRKSICIEIN
NGELFFVASE NSYNDDNINT PKEIDDTVTS NNNYENDLDQ VILNFNSESA PGLSDEKLNL
TIQNDAYIPK YDSNGTSDIE QHDVNELNVF FYLDAQKVPE GENNVNLTSS IDTALLEQPK
IYTFFSSEFI NNVNKPVQAA LFVSWIQQVL VDFTTEANQK STVDKIADIS IVVPYIGLAL
NIGNEAQKGN FKDALELLGA GILLEFEPEL LIPTILVFTI KSFLGSSDNK NKVIKAINNA
LKERDEKWKE VYSFIVSNWM TKINTQFNKR KEQMYQALQN QVNAIKTIIE SKYNSYTLEE
KNELTNKYDI KQIENELNQK VSIAMNNIDR FLTESSISYL MKIINEVKIN KLREYDENVK
TYLLNYIIQH GSILGESQQE LNSMVTDTLN NSIPFKLSSY TDDKILISYF NKFFKRIKSS
SVLNMRYKND KYVDTSGYDS NININGDVYK YPTNKNQFGI YNDKLSEVNI SQNDYIIYDN
KYKNFSISFW VRIPNYDNKI VNVNNEYTII NCMRDNNSGW KVSLNHNEII WTFEDNRGIN
QKLAFNYGNA NGISDYINKW IFVTITNDRL GDSKLYINGN LIDQKSILNL GNIHVSDNIL
FKIVNCSYTR YIGIRYFNIF DKELDETEIQ TLYSNEPNTN ILKDFWGNYL LYDKEYYLLN
VLKPNNFIDR RKDSTLSINN IRSTILLANR LYSGIKVKIQ RVNNSSTNDN LVRKNDQVYI
NFVASKTHLF PLYADTATTN KEKTIKISSS GNRFNQVVVM NSVGNCTMNF KNNNGNNIGL
LGFKADTVVA STWYYTHMRD HTNSNGCFWN FISEEHGWQE K
[0318] 6. Botulinum Neurotoxin Type F (BoNT/F) (EC 3.4.24.69)
(Bontoxilysin-F)
TABLE-US-00029 P30996; BXF_CLOBO (SEQ ID NO: 144) MPVAINSFNY
NDPVNDDTIL YMQIPYEEKS KKYYKAFEIM RNVWIIPERN TIGTNPSDFD PPASLKNGSS
AYYDPNYLTT DAEKDRYLKT TIKLFKRINS NPAGKVLLQE ISYAKPYLGN DHTPIDEFSP
VTRTTSVNIK LSTNVESSML LNLLVLGAGP DIFESCCYPV RKLIDPDVVY DPSNYGFGSI
NIVTFSPEYE YTFNDISGGH NSSTESFIAD PAISLAHELI HALHGLYGAR GVTYEETIEV
KQAPLMIAEK PIRLEEFLTF GGQDLNIITS AMKEKIYNNL LANYEKIATR LSEVNSAPPE
YDINEYKDYF QWKYGLDKNA DGSYTVNENK FNEIYKKLYS FTESDLANKF KVKCRNTYFI
KYEFLKVPNL LDDDIYTVSE GFNIGNLAVN NRGQSIKLNP KIIDSIPDKG LVEKIVKFCK
SVIPRKGTKA PPRLCIRVNN SELFFVASES SYNENDINTP KEIDDTTNLN NNYRNNLDEV
ILDYNSQTIP QISNRTLNTL VQDNSYVPRY DSNGTSEIEE YDVVDFNVFF YLHAQKVPEG
ETNISLTSSI DTALLEESKD IFFSSEFIDT INKPVNAALF IDWISKVIRD FTTEATQKST
VDKIADISLI VPYVGLALNI IIEAEKGNFE EAFELLGVGI LLEFVPELTI PVILVFTIKS
YIDSYENKNK AIKAINNSLI EREAKWKEIY SWIVSNWLTR INTQFNKRKE QMYQALQNQV
DAIKTAIEYK YNNYTSDEKN RLESEYNINN IEEELNKKVS LAMKNIERFM TESSISYLMK
LINEAKVGKL KKYDNHVKSD LLNYILDHRS ILGEQTNELS DLVTSTLNSS IPFELSSYTN
DKILIIYFNR LYKKIKDSSI LDMRYENNKF IDISGYGSNI SINGNVYIYS TNRNQFGIYN
SRLSEVNIAQ NNDIIYNSRY QNFSISFWVR IPKHYKPMNH NREYTIINCM GNNNSGWKIS
LRTVRDCEII WTLQDTSGNK ENLIFRYEEL NRISNYINKW IFVTITNNRL GNSRIYINGN
LIVEKSISNL GDIHVSDNIL FKIVGCDDET YVGIRYFKVF NTELDKTEIE TLYSNEPDPS
ILKNYWGNYL LYNKKYYLFN LLRKDKYITL NSGILNINQQ RGVTEGSVFL NYKLYEGVEV
IIRKNGPIDI SNTDNFVRKN DLAYINVVDR GVEYRLYADT KSEKEKIIRT SNLNDSLGQI
IVMDSIGNNC TMNFQNNNGS NIGLLGFHSN NLVASSWYYN NIRRNTSSNG CFWSSISKEN
GWKE
[0319] 7. Botulinum Neurotoxin Type G (BoNT/G) (EC 3.4.24.69)
(Bontoxilysin-G)
TABLE-US-00030 Q60393; BXG_CLOBO (SEQ ID NO: 145) MPVNIKXFNY
NDPINNDDII MMEPFNDPGP GTYYKAFRII DRIWIVPERF TYGFQPDQFN ASTGVFSKDV
YEYYDPTYLK TDAEKDKFLK TMIKLFNRIN SKPSGQRLLD MIVDAIPYLG NASTPPDKFA
ANVANVSINK KIIQPGAEDQ IKGLMTNLII FGPGPVLSDN FTDSMIMNGH SPISEGFGAR
MMIRFCPSCL NVFNNVQENK DTSIFSRRAY FADPALTLMH ELIHVLHGLY GIKISNLPIT
PNTKEFFMQH SDPVQAEELY TFGGHDPSVI SPSTDMNIYN KALQNFQDIA NRLNIVSSAQ
GSGIDISLYK QIYKNKYDFV EDPNGKYSVD KDKFDKLYKA LMFGFTETNL AGEYGIKTRY
SYFSEYLPPI KTEKLLDNTI YTQNEGFNIA SKNLKTEFNG QNKAVNKEAY EEISLEHLVI
YRIAMCKPVM YKNTGKSEQC IIVNNEDLFF IANKDSFSKD LAKAETIAYN TQNNTIENNF
SIDQLILDND LSSGIDLPNE NTEPFTNFDD IDIPVYIKQS ALKKIFVDGD SLFEYLHAQT
FPSNIENLQL TNSLNDALRN NNKVYTFFST NLVEKANTVV GASLFVNWVK GVIDDFTSES
TQKSTIDKVS DVSIIIPYIG PALNVGNETA KENFKNAFEI GGAAILMEFI PELIVPIVGF
FTLESYVGNK GHIIMTISNA LKKRDQKWTD MYGLIVSQWL STVNTQFYTI KERMYNALNN
QSQAIEKIIE DQYNRYSEED KMNINIDFND IDFKLNQSIN LAINNIDDFI NQCSISYLMN
RMIPLAVKKL KDFDDNLKRD LLEYIDTNEL YLLDEVNILK SKVNRHLKDS IPFDLSLYTK
DTILIQVFNN YISNISSNAI LSLSYRGGRL IDSSGYGATM NVGSDVIFND IGNGQFKLNN
SENSNITAHQ SKFVVYDSMF DNFSINFWVR TPKYNNNDIQ TYLQNEYTII SCIKNDSGWK
VSIKGNRIIW TLIDVNAKSK SIFFEYSIKD NISDYINKWF SITITNDRLG NANIYINGSL
KKSEKILNLD RINSSNDIDF KLINCTDTTK FVWIKDFNIF GRELNATEVS SLYWIQSSTN
TLKDFWGNPL RYDTQYYLFN QGMQNIYIKY FSKASMGETA PRTNFNNAAI NYQNLYLGLR
FIIKKASNSR NINNDNIVRE GDYIYLNIDN ISDESYRVYV LVNSKEIQTQ LFLAPINDDP
TFYDVLQIKK YYEKTTYNCQ ILCEKDTKTF GLFGIGKFVK DYGYVWDTYD NYFCISQWYL
RRISENINKL RLGCNWQFIP VDEGWTE
[0320] 8. Tetanus Toxin (EC 3.4.24.68) (Tentoxylysin)
TABLE-US-00031 P04958; TETX_CLOTE (SEQ ID NO: 146) MPITINNFRY
SDPVNNDTII MMEPPYCKGL DIYYKAFKIT DRIWIVPERY EFGTKPEDFN PPSSLIEGAS
EYYDPNYLRT DSDKDRFLQT MVKLFNRIKN NVAGEALLDK IINAIPYLGN SYSLLDKFDT
NSNSVSFNLL EQDPSGATTK SAMLTNLIIF GPGPVLNKNE VRGIVLRVDN KNYFPCRDGF
GSIMQMAFCP EYVPTFDNVI ENITSLTIGK SKYFQDPALL LMHELIHVLH GLYGMQVSSH
EIIPSKQEIY MQHTYPISAE ELFTFGGQDA NLISIDIKND LYEKTLNDYK AIANKLSQVT
SCNDPNIDID SYKQIYQQKY QFDKDSNGQY IVNEDKFQIL YNSIMYGFTE IELGKKFNIK
TRLSYFSMNH DPVKIPNLLD DTIYNDTEGF NIESKDLKSE YKGQNMRVNT NAFRNVDGSG
LVSKLIGLCK KIIPPTNIRE NLYNRTASLT DLGGELCIKI KNEDLTFIAE KNSFSEEPFQ
DEIVSYNTKN KPLNFNYSLD KIIVDYNLQS KITLPNDRTT PVTKGIPYAP EYKSNAASTI
EIHNIDDNTI YQYLYAQKSP TTLQRITMTN SVDDALINST KIYSYFPSVI SKVNQGAQGI
LFLQWVRDII DDFTNESSQK TTIDKISDVS TIVPYIGPAL NIVKQGYEGN FIGALETTGV
VLLLEYIPEI TLPVIAALSI AESSTQKEKI IKTIDNFLEK RYEKWIEVYK LVKAKWLGTV
NTQFQKRSYQ MYRSLEYQVD AIKKIIDYEY KIYSGPDKEQ IADEINNLKN KLEEKANKAM
ININIFMRES SRSFLVNQMI NEAKKQLLEF DTQSKNILMQ YIKANSKFIG ITELKKLESK
INKVFSTPIP FSYSKNLDCW VDNEEDIDVI LKKSTILNLD INNDIISDIS GFNSSVITYP
DAQLVPGING KAIHLVNNES SEVIVHKAMD IEYNDMFNNF TVSFWLRVPK VSASHLEQYG
TNEYSIISSM KKHSLSIGSG WSVSLKGNNL IWTLKDSAGE VRQITFRDLP DKFNAYLANK
WVFITITNDR LSSANLYING VLMGSAEITG LGAIREDNNI TLKLDRCNNN NQYVSIDKFR
IFCKALNPKE IEKLYTSYLS ITFLRDFWGN PLRYDTEYYL IPVASSSKDV QLKNITDYMY
LTNAPSYTNG KLNIYYRRLY NGLKFIIKRY TPNNEIDSFV KSGDFIKLYV SYNNNEHIVG
YPKDGNAFNN LDRILRVGYN APGIPLYKKM EAVKLRDLKT YSVQLKLYDD KNASLGLVGT
HNGQIGNDPN RDILIASNWY FNHLKDKILG CDWYFVPTDE GWTND
[0321] 9. Diphtheria Toxin (DT) (NAD(+)-diphthamide
ADP-ribosyltransferase) (EC 2.4.2.36)
TABLE-US-00032 P00588; DTX_CORBE (SEQ ID NO: 147) MLVRGYVVSR
KLFASILIGA LLGIGAPPSA HAGADDVVDS SKSFVMENFS SYHGTKPGYV DSIQKGIQKP
KSGTQGNYDD DWKGFYSTDN KYDAAGYSVD NENPLSGKAG GVVKVTYPGL TKVLALKVDN
AETIKKELGL SLTEPLMEQV GTEEFIKRFG DGASRVVLSL PFAEGSSSVE YINNWEQAKA
LSVELEINFE TRGKRGQDAM YEYMAQACAG NRVRRSVGSS LSCINLDWDV IRDKTKTKIE
SLKEHGPIKN KMSESPNKTV SEEKAKQYLE EFHQTALEHP ELSELKTVTG TNPVFAGANY
AAWAVNVAQV IDSETADNLE KTTAALSILP GIGSVMGIAD GAVHHNTEEI VAQSIALSSL
MVAQAIPLVG ELVDIGFAAY NFVESIINLF QVVHNSYNRP AYSPGHKTQP FLHDGYAVSW
NTVEDSIIRT GFQGESGHDI KITAENTPLP IAGVLLPTIP GKLDVNKSKT HISVNGRKIR
MRCRAIDGDV TFCRPKSPVY VGNGVHANLH VAFHRSSSEK IHSNEISSDS IGVLGYQKTV
DHTKVNSKLS LFFEIKS
[0322] 10. Pseudomonas Exotoxin
TABLE-US-00033 P11439; TOXA_PSEAE (SEQ ID NO: 148) MHLTPHWIPL
VASLGLLAGG SFASAAEEAF DLWNECAKAC VLDLKDGVRS SRMSVDPAIA DTNGQGVLHY
SMVLEGGNDA LKLAIDNALS ITSDGLTIRL EGGVEPNKPV RYSYTRQARG SWSLNWLVPI
GHEKPSNIKV FIHELNAGNQ LSHMSPIYTI EMGDELLAKL ARDATFFVRA HESNEMQPTL
AISHAGVSVV MAQAQPRREK RWSEWASGKV LCLLDPLDGV YNYLAQQRCN LDDTWEGKIY
RVLAGNPAKH DLDIKPTVIS HRLHFPEGGS LAALTAHQAC HLPLETFTRH RQPRGWEQLE
QCGYPVQRLV ALYLAARLSW NQVDQVIRNA LASPGSGGDL GEAIREQPEQ ARLALTLAAA
ESERFVRQGT GNDEAGAASA DVVSLTCPVA AGECAGPADS GDALLERNYP TGAEFLGDGG
DISFSTRGTQ NWTVERLLQA HRQLEERGYV FVGYHGTFLE AAQSIVFGGV RARSQDLDAI
WRGFYIAGDP ALAYGYAQDQ EPDARGRIRN GALLRVYVPR SSLPGFYRTG LTLAAPEAAG
EVERLIGHPL PLRLDAITGP EEEGGRLETI LGWPLAERTV VIPSAIPTDP RNVGGDLDPS
SIPDKEQAIS ALPDYASQPG KPPREDLK
[0323] Peptide Synthesis
[0324] There are at least four ways to obtain a peptide: (1)
purification from a biological system (e.g., tissue, serum, urine,
etc.); (Donini P et al., Acta Endocrinol (Copenh). 1966;
52(2):169-85 and Donini P et al., Acta Endocrinol (Copenh). 1966;
52(2):186-98. (2) purification of a peptide fragment after
digestion of a protein; (Schulz-Knappe P et al., Eur J Med. Res.
1996; 1(5):223-36. and Kilara A, and Panyam D. Crit. Rev Food Sci
Nutr. 2003; 43(6):607-33 (3) genetic engineering and recombinant
technologies well known in the art (Martial J A et al., Science.
1979; 205(4406):602-7) and (4) direct chemical synthesis Peptide
Synthesis and Applications, 1984. Edited by John Howl (Methods in
Molecular Biology, Vol. 298), Humana Press, Totowa, N.J. Chemistry
of Peptide Synthesis, 2005. N. Leo Benoiton, CRC Press, Boca Raton,
Fla.
[0325] The first two approaches are often impractical due to a lack
of control over the peptide sequences. The first approach is also
problematic due to a low concentration of peptide in biological
samples that requires significant concentrating steps prior to
purification. Typically, therefore, for shorter peptides direct
chemical synthesis is an attractive option, whereas, for larger
peptides, recombinant technology is preferred.
[0326] Traditional synthetic approaches of organic chemistry are
generally impractical for peptides with more than four or five
amino acid residues due to the complexities of amino acids and
peptides. The problems include the presence of multiple reactive
groups in the peptide which lead to multiple sites of conjugation
on a peptide thereby leading to peptide mixtures that are impure
with respect to the peptide of interest and therefore require
purification after each step. (Reference: Lehninger Principles of
Biochemistry, 3.sup.rd Ed., 2000. Edited by David L. Nelson and
Michael M. Cox, Worth Publishers, New York, N.Y.)
[0327] The advent of solid phase peptide synthesis (Merrifield,
1962) in which a peptide is synthesized while keeping it
immobilized at one end to a solid support provided the major
breakthrough in the direct chemical synthesis of peptides. Today,
most solid phase peptide syntheses involve FMOC chemistry. Briefly,
chemical synthesis proceeds from the carboxyl terminus (C terminus)
to the amino terminus (N terminus). The solid phase support is an
insoluble polymer or resin. The 9-fluorenyl-methoxycarbonyl (FMOC)
group prevents unwanted reactions at the .alpha.-amino group of the
amino acid residue. The peptide is built on a resin support one
amino acid at a time using a standard set of reactions in a
repeating cycle. First, the C-terminal amino acid with the
.alpha.-amino group protected by an FMOC group is attached to the
reactive group on the resin. The protecting group on the
.alpha.-amino group of the amino acid attached to the resin is
removed, generally with a mild organic base. Now, the resin with
the C-terminal amino acid is ready to receive the second amino acid
of the peptide. Each amino acid is received, protected with
different chemistries at the .alpha.-amino group (FMOC) and
carboxyl group (generally, Dicyclohexylcarbodiimide, DCC). The
carboxyl group of the second amino acid is activated by removing
DCC and reacted with the deprotected .alpha.-amino group of the
first amino acid on the solid support to form the peptide bond
(Peptide Synthesis and Applications, 1984. Edited by John Howl
(Methods in Molecular Biology, Vol. 298), Humana Press, Totowa,
N.J. Chemistry of Peptide Synthesis, 2005. N. Leo Benoiton, CRC
Press, Boca Raton, Fla.) (Reference: Lehninger Principles of
Biochemistry, 3.sup.rd Ed., 2000. Edited by David L. Nelson and
Michael M. Cox, Worth Publishers, New York, N.Y.).
[0328] At each successive step in the cycle, protective chemical
groups block unwanted reactions and the sequence of (i)
deprotection of the .alpha.-amino group on the nascent peptide;
(ii) activation of the carboxyl group on the next amino acid and
(iii) reaction to form peptide bond continues until the entire
peptide sequence is synthesized. When the peptide synthesis is
complete, the linkage between the resin and the peptide is cleaved
off to obtain the final peptide. The state-of-the-art solid phase
peptide synthesis technology is automated, and several kinds of
commercial instruments are now available and well known in the art.
(Peptide Synthesis and Applications, 1984. Edited by John Howl
(Methods in Molecular Biology, Vol. 298), Humana Press, Totowa,
N.J. Chemistry of Peptide Synthesis, 2005. N. Leo Benoiton, CRC
Press, Boca Raton, Fla.; Lehninger Principles of Biochemistry,
3.sup.rd Ed., 2000. Edited by David L. Nelson and Michael M. Cox,
Worth Publishers, New York, N.Y.)
[0329] Since the solid phase synthesis is a stepwise process for
longer peptides it has the important limitation of lower overall
yield and therefore increased cost. For example, with a 96%
stepwise yield, the overall yield for 21mer, 51mer and 100mer
peptides are 44%, 13% and 1.7%, respectively. Similarly, with a
99.8% stepwise yield, the overall yield for 21mer, 51mer and 100mer
peptides are 96%, 90% and 82%, respectively. Therefore, for longer
peptides it is more cost- and time-effective to genetically
engineer A sequence in an expression cassette and express the
sequence in an appropriate expression system (e.g., microbial
expression system such as E. coli or yeast) or mammalian expression
system (cell culture). For smaller peptides, however, the cost of
genetically engineer the sequence and expressing and purifying the
peptides are generally cost- and time-effective compared to the
solid phase peptide synthesis.
[0330] Peptides useful for the current invention are synthesized,
expressed or purified using the methods described above or other
methods of synthesis, expression or purification known in the
art.
[0331] Formation of dsRNA-Peptide Conjugate
[0332] At least one peptide is conjugated to a dsRNA either to the
first or second strand or both and either on the 3' end or 5' end
or both or internally. A peptide of the invention can be conjugated
to a dsRNA of the invention via any amino acid residue in the
peptide, e.g., the C-terminal amino acid of the C-terminus via the
carboxyl group of the C-terminal amino acid or the N-terminal amino
acid of the N-terminus via the .alpha.-amino group of the
N-terminal amino acid or to a specific functional group on the
amino acid residue (e.g., --SH group on Cys or amino group of
Lys).
[0333] A dsRNA is conjugated to a peptide of the invention using
any conjugation chemistry known in the art for peptide or proteins
(References: Bioconjugate Techniques, 1996. Greg T. Hermanson,
Academic Press, San Diego, Calif.; Chemistry of Protein Conjugation
and Cross-linking, 1991. Shan S. Wong, CRC Press, Boca Raton,
Fla.).
[0334] In one embodiment the 5' end of the first or second strand
is synthesized with a (CH.sub.2).sub.6--NH.sub.3 linker and
conjugated to the --SH group of Cys of a peptide using maleimide
chemistry to form a stable conjugate.
[0335] In another embodiment the 3' end of the first or second
strand is synthesized with a (CH.sub.2).sub.6--SH linker and
conjugated to the --SH group of Cys or a peptide via disulfide
exchange to form a cleavable conjugate.
[0336] Following conjugation, dsRNA-peptide conjugates are purified
by methods well known in the art (Oehlke J et al., Eur J. Biochem.
2002; 269(16):4025-32, Hamma T and Miller P S. Bioconjug Chem.
2003; 14(2):320-30, Zatsepin T S et al., Bioconjug Chem. 2005;
16(3):471-89, Ferenc G et al. Nucleosides Nucleotides Nucleic
Acids. 2005; 24(5-7):1059-61). and characterized for identity and
purity with standard analytical methods.
[0337] Determining the Function of dsRNA-Delivery Peptide
Conjugates
[0338] A dsRNA-peptide conjugate of the invention is assayed to
determine the ability of the dsRNA to be delivered to the
appropriate target and to mediate RNAi cleavage (as described in
the section entitled "RNAi In Vitro Assay to Assess DsiRNA
Activity", hereinbelow). A dsRNA peptide conjugate of the invention
is also assayed to determine the ability of the peptide to be
delivered to the appropriate target.
[0339] In one embodiment, a dsRNA-peptide or a peptide alone
attaches to or interacts with a cell surface. The dsRNA-peptide
conjugates or the peptide alone is taken up by a cell by directly
penetrating the cell membrane, by an endocytic pathway, by both or
by other methods known in the art.
[0340] The functionality of a dsRNA-peptide conjugate of the
invention can be determined by quantitation of dsRNA
Oligonucleotide according to the following method.
[0341] The technology employed to quantitate the DsiRNA
oligonucleotides from plasma or tissue samples consists of solid
phase extraction to isolate the analyte from the matrix followed by
reversed phase ion pairing ultraperformance liquid chromatography
(HPLC) separation and detection by electrospray ionization tandem
mass spectrometry (ESI-MS/MS). The analytical instrumentation
consists of a Waters Acquity HPLC chromatograph with a photodiode
array detector connected in series to a Waters Quattro Premiere
triple quadrupole mass spectrometer.
[0342] The solid phase extraction is accomplished using
Phenomenex's Clarity extraction media and protocol. A "load/lysis"
buffer is added to the plasma sample containing the oligo to remove
any bound proteins. The oligo is preferentially adsorbed onto the
solid phase media. Then a series of buffers are used to wash the
oligo to remove contaminants and salts which will inhibit
separation and ionization. Finally, the oligo is eluted from the
media, concentrated and resuspended in a buffer which is amenable
to the downstream analysis.
[0343] The chromatographic separation is accomplished using a
mobile phase of hexafluoroisopropanol (HFIP) and triethylamine
(TEA) and a C.sub.18 stationary phase. The mass spectrometric
detection is accomplished using electrospray ionization followed by
a tandem MS (MS/MS) analysis. LC/MS system is developed to
determine the characteristic transitions for that particular
oligonucleotide molecule. Quantitation of the DsiRNA content in the
samples is accomplished by comparing the MS response of the samples
to a standard curve of the same DsiRNA in the test sample at varied
concentrations (Lin et al. J Pharm Biomed Anal. 2007 Jun. 28:
44(2):330-341). The final data is expressed as a concentration of
DsiRNA oligo mass per unit volume of sample (e.g., ng/mL).
Modification of DsiRNAs
[0344] dsRNAs and dsRNA-peptide conjugates are transfected in vitro
in cell culture models to establish comparative uptake or delivery
of the dsRNAs and dsRNA-peptide conjugates. Appropriate cell
culture models are utilized and end point measurements include, but
are not limited to, one or more of the following: (i) mRNA
quantification using qPCR; (ii) protein quantification using
Western blot; (iii) labelled cell internalization of dsRNAs and
dsRNA-peptide conjugates. Comparative uptake or delivery of the
dsRNAs and dsRNA-peptide conjugates are assessed for the amount of
delivered dsRNA, the speed of delivery of dsRNA and the stability
of delivered dsRNA, for example, using the above-recited end point
measurements.
[0345] In one example, transfection is performed in 24- or 48-well
plates for transfecting dsRNAs or dsRNA-peptide conjugates into
HeLa cells. Prior to application, dsRNAs and dsRNA-peptide
conjugates are diluted into the cell culture media and incubated at
room temperature for about 30 min. For dose-response experiments,
the final concentration of dsRNAs and dsRNA-peptide conjugates
applied are varied within a range of 0 to 50 nM. For the
time-course experiments, to determine the speed with which a dsRNA
is delivered as defined herein, an optimum concentration of
dsRNA-peptide conjugate determine from the dose response experiment
is studied for various incubation times, e.g., 30 min to 7
days.
[0346] The functionality of peptide, dsRNA and dsRNA-peptide
conjugates are also tested by differentially labelling the peptide
and the dsRNA with fluorescent tags and performing fluorescent co
localization studies. A peptide is tagged with a green fluorescent
dye and the dsRNAs are tagged with red florescent dye. Using this
methodology, and a comparison with the localization of free (i.e.,
unconjugated) dsRNA confirms the ability of a peptide to
internalize both the peptide alone and dsRNA-peptide conjugates.
The following references describe how to conduct fluorescent
localization and cellular trafficking studies--Moschos et al.,
Bioconjug Chem. 2007; 18(5):1450-1459; Moschos et al., Biochemical
Society Transactions 2007; 35(4):807-810; Lord-Fontaine et al., J.
Neurotrauma 2008; 25:1309-1322; Winton et al., J. Biol. Chem. 2002;
36(6):32820-32829; Lu, Langer and Chen. Mol. Pharm. 2009 Mar. 30.
[Epub ahead of print]; McNaughton et al., Proc Natl Acad Sci USA.
2009 Apr. 14; 106(15):6111-6116.
Modification of dsRNAs
[0347] One major factor that inhibits the effect of double stranded
RNAs ("dsRNAs") is the degradation of dsRNAs (e.g., double-stranded
RNA, siRNAs and DsiRNAs) by nucleases. A 3'-exonuclease is the
primary nuclease activity present in serum and modification of the
3'-ends of antisense DNA oligonucleotides is crucial to prevent
degradation (Eder et al., 1991, Antisense Res Dev, 1: 141-151). An
RNase-T family nuclease has been identified called ERI-1 which has
3' to 5' exonuclease activity that is involved in regulation and
degradation of siRNAs (Kennedy et al., 2004, Nature 427: 645-649;
Hong et al., 2005, Biochem J, 390: 675-679). This gene is also
known as Thex1 (NM.sub.--02067) in mice or THEX1 (NM.sub.--153332)
in humans and is involved in degradation of histone mRNA; it also
mediates degradation of 3'-overhangs in siRNAs, but does not
degrade duplex RNA (Yang et al., 2006, J Biol Chem, 281:
30447-30454). It is therefore reasonable to expect that
3'-end-stabilization of dsRNAs, including the DsiRNAs of the
instant invention, will improve stability.
[0348] XRN1 (NM.sub.--019001) is a 5' to 3' exonuclease that
resides in P-bodies and has been implicated in degradation of mRNA
targeted by miRNA (Rehwinkel et al., 2005, RNA 11: 1640-1647) and
may also be responsible for completing degradation initiated by
internal cleavage as directed by a siRNA. XRN2 (NM.sub.--012255) is
a distinct 5' to 3' exonuclease that is involved in nuclear RNA
processing. Although not currently implicated in degradation or
processing of siRNAs and miRNAs, these both are known nucleases
that can degrade RNAs and may also be important to consider.
[0349] RNase A is a major endonuclease activity in mammals that
degrades RNAs. It is specific for ssRNA and cleaves at the 3'-end
of pyrimidine bases. SiRNA degradation products consistent with
RNase A cleavage can be detected by mass spectrometry after
incubation in serum (Turner et al., 2007, Mol Biosyst 3: 43-50).
The 3'-overhangs enhance the susceptibility of siRNAs to RNase
degradation. Depletion of RNase A from serum reduces degradation of
siRNAs; this degradation does show some sequence preference and is
worse for sequences having poly A/U sequence on the ends
(Haupenthal et al., 2006 Biochem Pharmacol 71: 702-710). This
suggests the possibility that lower stability regions of the duplex
may "breathe" and offer transient single-stranded species available
for degradation by RNase A. RNase A inhibitors can be added to
serum and improve siRNA longevity and potency (Haupenthal et al.,
2007, Int J. Cancer 121: 206-210).
[0350] In 21mers, phosphorothioate or boranophosphate modifications
directly stabilize the internucleoside phosphate linkage.
Boranophosphate modified RNAs are highly nuclease resistant, potent
as silencing agents, and are relatively non-toxic. Boranophosphate
modified RNAs cannot be manufactured using standard chemical
synthesis methods and instead are made by in vitro transcription
(IVT) (Hall et al., 2004, Nucleic Acids Res 32: 5991-6000; Hall et
al., 2006, Nucleic Acids Res 34: 2773-2781). Phosphorothioate (PS)
modifications can be easily placed in the RNA duplex at any desired
position and can be made using standard chemical synthesis methods.
The PS modification shows dose-dependent toxicity, so most
investigators have recommended limited incorporation in siRNAs,
favoring the 3'-ends where protection from nucleases is most
important (Harborth et al., 2003, Antisense Nucleic Acid Drug Dev
13: 83-105; Chiu and Rana, 2003, Mol Cell 10: 549-561; Braasch et
al., 2003, Biochemistry 42: 7967-7975; Amarzguioui et al., 2003,
Nucleic Acids Research 31: 589-595). More extensive PS modification
can be compatible with potent RNAi activity; however, use of sugar
modifications (such as 2'-O-methyl RNA) may be superior (Choung et
al., 2006, Biochem Biophys Res Commun 342: 919-927).
[0351] A variety of substitutions can be placed at the 2'-position
of the ribose which generally increases duplex stability (T.sub.m)
and can greatly improve nuclease resistance. 2'-O-methyl RNA is a
naturally occurring modification found in mammalian ribosomal RNAs
and transfer RNAs. 2'-O-methyl modification in siRNAs is known, but
the precise position of modified bases within the duplex is
important to retain potency and complete substitution of
2'-O-methyl RNA for RNA will inactivate the siRNA. For example, a
pattern that employs alternating 2'-O-methyl bases can have potency
equivalent to unmodified RNA and is quite stable in serum (Choung
et al., 2006, Biochem Biophys Res Commun 342: 919-927; Czauderna et
al., 2003, Nucleic Acids Research 31: 2705-2716).
[0352] The 2'-fluoro (2'-F) modification is also compatible with
dsRNA (e.g., siRNA and DsiRNA) function; it is most commonly placed
at pyrimidine sites (due to reagent cost and availability) and can
be combined with 2'-O-methyl modification at purine positions; 2'-F
purines are available and can also be used. Heavily modified
duplexes of this kind can be potent triggers of RNAi in vitro
(Allerson et al., 2005, J Med Chem 48: 901-904; Prakash et al.,
2005, J Med Chem 48: 4247-4253; Kraynack and Baker, 2006, RNA 12:
163-176) and can improve performance and extend duration of action
when used in vivo (Morrissey et al., 2005, Hepatology 41:
1349-1356; Morrissey et al., 2005, Nat Biotechnol 23: 1002-1007). A
highly potent, nuclease stable, blunt 19mer duplex containing
alternative 2'-F and 2'-O-Me bases is taught by Allerson. In this
design, alternating 2'-O-Me residues are positioned in an identical
pattern to that employed by Czauderna, however the remaining RNA
residues are converted to 2'-F modified bases. A highly potent,
nuclease resistant siRNA employed by Morrissey employed a highly
potent, nuclease resistant siRNA in vivo. In addition to 2'-O-Me
RNA and 2'-F RNA, this duplex includes DNA, RNA, inverted abasic
residues, and a 3'-terminal PS internucleoside linkage. While
extensive modification has certain benefits, more limited
modification of the duplex can also improve in vivo performance and
is both simpler and less costly to manufacture. Soutschek et al.
(2004, Nature 432: 173-178) employed a duplex in vivo and was
mostly RNA with two 2'-O-Me RNA bases and limited 3'-terminal PS
internucleoside linkages.
[0353] Locked nucleic acids (LNAs) are a different class of
2'-modification that can be used to stabilize dsRNA (e.g., siRNA
and DsiRNA). Patterns of LNA incorporation that retain potency are
more restricted than 2'-O-methyl or 2'-F bases, so limited
modification is preferred (Braasch et al., 2003, Biochemistry 42:
7967-7975; Grunweller et al., 2003, Nucleic Acids Res 31:
3185-3193; Elmen et al., 2005, Nucleic Acids Res 33: 439-447). Even
with limited incorporation, the use of LNA modifications can
improve dsRNA performance in vivo and may also alter or improve off
target effect profiles (Mook et al., 2007, Mol Cancer Ther 6:
833-843).
[0354] Synthetic nucleic acids introduced into cells or live
animals can be recognized as "foreign" and trigger an immune
response. Immune stimulation constitutes a major class of
off-target effects which can dramatically change experimental
results and even lead to cell death. The innate immune system
includes a collection of receptor molecules that specifically
interact with DNA and RNA that mediate these responses, some of
which are located in the cytoplasm and some of which reside in
endosomes (Marques and Williams, 2005, Nat Biotechnol 23:
1399-1405; Schlee et al., 2006, Mol Ther 14: 463-470). Delivery of
siRNAs by cationic lipids or liposomes exposes the siRNA to both
cytoplasmic and endosomal compartments, maximizing the risk for
triggering a type 1 interferon (IFN) response both in vitro and in
vivo (Morrissey et al., 2005, Nat Biotechnol 23: 1002-1007; Sioud
and Sorensen, 2003, Biochem Biophys Res Commun 312: 1220-1225;
Sioud, 2005, J Mol Biol 348: 1079-1090; Ma et al., 2005, Biochem
Biophys Res Commun 330: 755-759). RNAs transcribed within the cell
are less immunogenic (Robbins et al., 2006, Nat Biotechnol 24:
566-571) and synthetic RNAs that are immunogenic when delivered
using lipid-based methods can evade immune stimulation when
introduced unto cells by mechanical means, even in vivo (Heidel et
al., 2004, Nat Biotechnol 22: 1579-1582). However, lipid based
delivery methods are convenient, effective, and widely used. Some
general strategy to prevent immune responses is needed, especially
for in vivo application where all cell types are present and the
risk of generating an immune response is highest. Use of chemically
modified RNAs may solve most or even all of these problems.
[0355] Although certain sequence motifs are clearly more
immunogenic than others, it appears that the receptors of the
innate immune system in general distinguish the presence or absence
of certain base modifications which are more commonly found in
mammalian RNAs than in prokaryotic RNAs. For example,
pseudouridine, N6-methyl-A, and 2'-O-methyl modified bases are
recognized as "self" and inclusion of these residues in a synthetic
RNA can help evade immune detection (Kariko et al., 2005, Immunity
23: 165-175). Extensive 2'-modification of a sequence that is
strongly immunostimulatory as unmodified RNA can block an immune
response when administered to mice intravenously (Morrissey et al.,
2005, Nat Biotechnol 23: 1002-1007). However, extensive
modification is not needed to escape immune detection and
substitution of as few as two 2'-O-methyl bases in a single strand
of a siRNA duplex can be sufficient to block a type 1 IFN response
both in vitro and in vivo; modified U and G bases are most
effective (Judge et al., 2006, Mol Ther 13: 494-505). As an added
benefit, selective incorporation of 2'-O-methyl bases can reduce
the magnitude of off-target effects (Jackson et al., 2006, RNA 12:
1197-1205). Use of 2'-O-methyl bases should therefore be considered
for all dsRNAs intended for in vivo applications as a means of
blocking immune responses and has the added benefit of improving
nuclease stability and reducing the likelihood of off-target
effects.
[0356] Although cell death can result from immune stimulation,
assessing cell viability is not an adequate method to monitor
induction of IFN responses. IFN responses can be present without
cell death, and cell death can result from target knockdown in the
absence of IFN triggering (for example, if the targeted gene is
essential for cell viability). Relevant cytokines can be directly
measured in culture medium and a variety of commercial kits exist
which make performing such assays routine. While a large number of
different immune effector molecules can be measured, testing levels
of IFN-.alpha., TNF-.alpha., and IL-6 at 4 and 24 hours post
transfection is usually sufficient for screening purposes. It is
important to include a "transfection reagent only control" as
cationic lipids can trigger immune responses in certain cells in
the absence of any nucleic acid cargo. Including controls for IFN
pathway induction should be considered for cell culture work. It is
essential to test for immune stimulation whenever administering
nucleic acids in vivo, where the risk of triggering IFN responses
is highest.
[0357] Modifications can be included in the DsiRNA agents of the
present invention so long as the modification does not prevent the
DsiRNA agent from serving as a substrate for Dicer. In one
embodiment, one or more modifications are made that enhance Dicer
processing of the DsiRNA agent. In a second embodiment, one or more
modifications are made that result in more effective RNAi
generation. In a third embodiment, one or more modifications are
made that support a greater RNAi effect. In a fourth embodiment,
one or more modifications are made that result in greater potency
per each DsiRNA agent molecule to be delivered to the cell.
Modifications can be incorporated in the 3'-terminal region, the
5'-terminal region, in both the 3'-terminal and 5'-terminal region
or in some instances in various positions within the sequence. With
the restrictions noted above in mind, any number and combination of
modifications can be incorporated into the DsiRNA agent. Where
multiple modifications are present, they may be the same or
different. Modifications to bases, sugar moieties, the phosphate
backbone, and their combinations are contemplated. Either
5'-terminus can be phosphorylated.
[0358] Examples of modifications contemplated for the phosphate
backbone include phosphonates, including methylphosphonate,
phosphorothioate, and phosphotriester modifications such as
alkylphosphotriesters, and the like. Examples of modifications
contemplated for the sugar moiety include 2'-alkyl pyrimidine, such
as 2'-O-methyl, 2'-fluoro, amino, and deoxy modifications and the
like (see, e.g., Amarzguioui et al., 2003, Nucleic Acids Research
31: 589-595). Examples of modifications contemplated for the base
groups include abasic sugars, 2-O-alkyl modified pyrimidines,
4-thiouracil, 5-bromouracil, 5-iodouracil, and
5-(3-aminoallyl)-uracil and the like. Locked nucleic acids, or
LNA's, could also be incorporated. Many other modifications are
known and can be used so long as the above criteria are satisfied.
Examples of modifications are also disclosed in U.S. Pat. Nos.
5,684,143, 5,858,988 and 6,291,438 and in U.S. published patent
application No. 2004/0203145 A1. Other modifications are disclosed
in Herdewijn (2000, Antisense Nucleic Acid Drug Dev 10: 297-310),
Eckstein (2000, Antisense Nucleic Acid Drug Dev 10: 117-21),
Rusckowski et al. (2000, Antisense Nucleic Acid Drug Dev 10:
333-345), Stein et al. (2001, Antisense Nucleic Acid Drug Dev 11:
317-25); Vorobjev et al. (2001, Antisense Nucleic Acid Drug Dev 11:
77-85).
[0359] One or more modifications contemplated can be incorporated
into either strand. The placement of the modifications in the
DsiRNA agent can greatly affect the characteristics of the DsiRNA
agent, including conferring greater potency and stability, reducing
toxicity, enhance Dicer processing, and minimizing an immune
response. In one embodiment, the antisense strand or the sense
strand or both strands have one or more 2'-O-methyl modified
nucleotides. In another embodiment, the antisense strand contains
2'-O-methyl modified nucleotides. In another embodiment, the
antisense stand contains a 3' overhang that is comprised of
2'-O-methyl modified nucleotides. The antisense strand could also
include additional 2'-O-methyl modified nucleotides.
[0360] In certain embodiments of the present invention, the DsiRNA
agent has one or more properties which enhance its processing by
Dicer. According to these embodiments, the DsiRNA agent has a
length sufficient such that it is processed by Dicer to produce an
active siRNA and at least one of the following properties: (i) the
DsiRNA agent is asymmetric, e.g., has a 3' overhang on the
antisense strand and (ii) the DsiRNA agent has a modified 3' end on
the sense strand to direct orientation of Dicer binding and
processing of the dsRNA to an active siRNA. According to this
embodiment, the longest strand in the dsRNA comprises 25-35
nucleotides. In one embodiment, the DsiRNA agent is asymmetric such
that the sense strand comprises 25-28 nucleotides and the antisense
strand comprises 25-30 nucleotides. Thus, the resulting dsRNA has
an overhang on the 3' end of the antisense strand. The overhang is
1-4 nucleotides, for example 2 nucleotides. The sense strand may
also have a 5' phosphate.
[0361] In other embodiments, the sense strand of the DsiRNA agent
is modified for Dicer processing by suitable modifiers located at
the 3' end of the sense strand, i.e., the DsiRNA agent is designed
to direct orientation of Dicer binding and processing. Suitable
modifiers include nucleotides such as deoxyribonucleotides,
dideoxyribonucleotides, acyclonucleotides and the like and
sterically hindered molecules, such as fluorescent molecules and
the like. Acyclonucleotides substitute a 2-hydroxyethoxymethyl
group for the 2'-deoxyribofuranosyl sugar normally present in
dNMPs. Other nucleotides modifiers could include 3'-deoxyadenosine
(cordycepin), 3'-azido-3'-deoxythymidine (AZT),
2',3'-dideoxyinosine (ddI), 2',3'-dideoxy-3'-thiacytidine (3TC),
2',3'-didehydro-2',3'-dideoxythymidine (d4T) and the monophosphate
nucleotides of 3'-azido-3'-deoxythymidine (AZT),
2',3'-dideoxy-3'-thiacytidine (3TC) and
2',3'-didehydro-2',3'-dideoxythymidine (d4T). In one embodiment,
deoxynucleotides are used as the modifiers. When nucleotide
modifiers are utilized, 1-3 nucleotide modifiers, or 2 nucleotide
modifiers are substituted for the ribonucleotides on the 3' end of
the sense strand. When sterically hindered molecules are utilized,
they are attached to the ribonucleotide at the 3' end of the
antisense strand. Thus, the length of the strand does not change
with the incorporation of the modifiers. In another embodiment, the
invention contemplates substituting two DNA bases in the DsiRNA
agent to direct the orientation of Dicer processing of the
antisense strand. In a further embodiment of the present invention,
two terminal DNA bases are substituted for two ribonucleotides on
the 3'-end of the sense strand forming a blunt end of the duplex on
the 3' end of the sense strand and the 5' end of the antisense
strand, and a two-nucleotide RNA overhang is located on the 3'-end
of the antisense strand. This is an asymmetric composition with DNA
on the blunt end and RNA bases on the overhanging end.
[0362] The sense and antisense strands of a DsiRNA agent of the
instant invention anneal under biological conditions, such as the
conditions found in the cytoplasm of a cell. In addition, a region
of one of the sequences, particularly of the antisense strand, of
the DsiRNA agent has a sequence length of at least 19 nucleotides,
wherein these nucleotides are in the 21-nucleotide region adjacent
to the 3' end of the antisense strand and are sufficiently
complementary to a nucleotide sequence of the RNA produced from the
target gene.
[0363] The DsiRNA agent may also have one or more of the following
additional properties: (a) the antisense strand has a right shift
from the typical 21mer, (b) the strands may not be completely
complementary, i.e., the strands may contain simple mismatch
pairings and (c) base modifications such as locked nucleic acid(s)
may be included in the 5' end of the sense strand. A "typical"
21mer siRNA is designed using conventional techniques. In one
technique, a variety of sites are commonly tested in parallel or
pools containing several distinct siRNA duplexes specific to the
same target with the hope that one of the reagents will be
effective (Ji et al., 2003, FEBS Lett 552: 247-252). Other
techniques use design rules and algorithms to increase the
likelihood of obtaining active RNAi effector molecules (Schwarz et
al., 2003, Cell 115: 199-208; Khvorova et al., 2003, Cell 115:
209-216; Ui-Tei et al., 2004, Nucleic Acids Res 32: 936-948;
Reynolds et al., 2004, Nat Biotechnol 22: 326-330; Krol et al.,
2004, J Biol Chem 279: 42230-42239; Yuan et al., 2004, Nucl Acids
Res 32 (Webserver issue):W130-134; Boese et al., 2005, Methods
Enzymol 392: 73-96). High throughput selection of siRNA has also
been developed (U.S. published patent application No. 2005/0042641
A1). Potential target sites can also be analyzed by secondary
structure predictions (Heale et al., 2005, Nucleic Acids Res 33(3):
e30). This 21mer is then used to design a right shift to include
3-9 additional nucleotides on the 5' end of the 21mer. The sequence
of these additional nucleotides may have any sequence. In one
embodiment, the added ribonucleotides are based on the sequence of
the target gene. Even in this embodiment, full complementarity
between the target sequence and the antisense siRNA is not
required.
[0364] The first and second oligonucleotides of a DsiRNA agent of
the instant invention are not required to be completely
complementary. They only need to be substantially complementary to
anneal under biological conditions and to provide a substrate for
Dicer that produces a siRNA sufficiently complementary to the
target sequence. Locked nucleic acids, or LNA's, are well known to
a skilled artisan (Elmen et al., 2005, Nucleic Acids Res 33:
439-447; Kurreck et al., 2002, Nucleic Acids Res 30: 1911-1918;
Crinelli et al., 2002, Nucleic Acids Res 30: 2435-2443; Braasch and
Corey, 2001, Chem Biol 8: 1-7; Bondensgaard et al., 2000, Chemistry
6: 2687-2695; Wahlestedt et al., 2000, Proc Natl Acad Sci USA 97:
5633-5638). In one embodiment, an LNA is incorporated at the 5'
terminus of the sense strand. In another embodiment, an LNA is
incorporated at the 5' terminus of the sense strand in duplexes
designed to include a 3' overhang on the antisense strand.
[0365] In certain embodiments, the DsiRNA agent of the instant
invention has an asymmetric structure, with the sense strand having
a 25-base pair length, and the antisense strand having a 27-base
pair length with a 2 base 3'-overhang. In other embodiments, this
DsiRNA agent having an asymmetric structure further contains 2
deoxynucleotides at the 3' end of the sense strand in place of two
of the ribonucleotides.
[0366] Certain DsiRNA agent compositions containing two separate
oligonucleotides can be linked by a third structure. The third
structure will not block Dicer activity on the DsiRNA agent and
will not interfere with the directed destruction of the RNA
transcribed from the target gene. In one embodiment, the third
structure may be a chemical linking group. Many suitable chemical
linking groups are known in the art and can be used. Alternatively,
the third structure may be an oligonucleotide that links the two
oligonucleotides of the DsiRNA agent in a manner such that a
hairpin structure is produced upon annealing of the two
oligonucleotides making up the dsRNA composition. The hairpin
structure will not block Dicer activity on the DsiRNA agent and
will not interfere with the directed destruction of the target
RNA.
[0367] In certain embodiments, the DsiRNA agents of the invention
have several properties which enhance its processing by Dicer.
According to such embodiments, the DsiRNA agent has a length
sufficient such that it is processed by Dicer to produce an siRNA
and at least one of the following properties: (i) the DsiRNA agent
is asymmetric, e.g., has a 3' overhang on the sense strand and (ii)
the DsiRNA agent has a modified 3' end on the antisense strand to
direct orientation of Dicer binding and processing of the dsRNA to
an active siRNA. According to these embodiments, the longest strand
in the DsiRNA agent comprises 25-30 nucleotides. In one embodiment,
the sense strand comprises 25-30 nucleotides and the antisense
strand comprises 25-28 nucleotides. Thus, the resulting dsRNA has
an overhang on the 3' end of the sense strand. The overhang is 1-4
nucleotides, such as 2 nucleotides. The antisense strand may also
have a 5' phosphate.
[0368] In certain embodiments, the sense strand of a DsiRNA agent
is modified for Dicer processing by suitable modifiers located at
the 3' end of the sense strand, i.e., the DsiRNA agent is designed
to direct orientation of Dicer binding and processing. Suitable
modifiers include nucleotides such as deoxyribonucleotides,
dideoxyribonucleotides, acyclonucleotides and the like and
sterically hindered molecules, such as fluorescent molecules and
the like. Acyclonucleotides substitute a 2-hydroxyethoxymethyl
group for the 2'-deoxyribofuranosyl sugar normally present in
dNMPs. Other nucleotide modifiers could include 3'-deoxyadenosine
(cordycepin), 3'-azido-3'-deoxythymidine (AZT),
2',3'-dideoxyinosine (ddI), 2',3'-dideoxy-3'-thiacytidine (3TC),
2',3'-didehydro-2',3'-dideoxythymidine (d4T) and the monophosphate
nucleotides of 3'-azido-3'-deoxythymidine (AZT),
2',3'-dideoxy-3'-thiacytidine (3TC) and
2',3'-didehydro-2',3'-dideoxythymidine (d4T). In one embodiment,
deoxynucleotides are used as the modifiers. When nucleotide
modifiers are utilized, 1-3 nucleotide modifiers, or 2 nucleotide
modifiers are substituted for the ribonucleotides on the 3' end of
the sense strand. When sterically hindered molecules are utilized,
they are attached to the ribonucleotide at the 3' end of the
antisense strand. Thus, the length of the strand does not change
with the incorporation of the modifiers. In another embodiment, the
invention contemplates substituting two DNA bases in the dsRNA to
direct the orientation of Dicer processing. In a further invention,
two terminal DNA bases are located on the 3' end of the sense
strand in place of two ribonucleotides forming a blunt end of the
duplex on the 5' end of the antisense strand and the 3' end of the
sense strand, and a two-nucleotide RNA overhang is located on the
3'-end of the antisense strand. This is an asymmetric composition
with DNA on the blunt end and RNA bases on the overhanging end.
[0369] In certain other embodiments, the antisense strand of a
DsiRNA agent is modified for Dicer processing by suitable modifiers
located at the 3' end of the antisense strand, i.e., the DsiRNA
agent is designed to direct orientation of Dicer binding and
processing. Suitable modifiers include nucleotides such as
deoxyribonucleotides, dideoxyribonucleotides, acyclonucleotides and
the like and sterically hindered molecules, such as fluorescent
molecules and the like. Acyclonucleotides substitute a
2-hydroxyethoxymethyl group for the 2'-deoxyribofuranosyl sugar
normally present in dNMPs. Other nucleotide modifiers could include
3'-deoxyadenosine (cordycepin), 3'-azido-3'-deoxythymidine (AZT),
2',3'-dideoxyinosine (ddI), 2',3'-dideoxy-3'-thiacytidine (3TC),
2',3'-didehydro-2',3'-dideoxythymidine (d4T) and the monophosphate
nucleotides of 3'-azido-3'-deoxythymidine (AZT),
2',3'-dideoxy-3'-thiacytidine (3TC) and
2',3'-didehydro-2',3'-dideoxythymidine (d4T). In one embodiment,
deoxynucleotides are used as the modifiers. When nucleotide
modifiers are utilized, 1-3 nucleotide modifiers, or 2 nucleotide
modifiers are substituted for the ribonucleotides on the 3' end of
the antisense strand. When sterically hindered molecules are
utilized, they are attached to the ribonucleotide at the 3' end of
the antisense strand. Thus, the length of the strand does not
change with the incorporation of the modifiers. In another
embodiment, the invention contemplates substituting two DNA bases
in the dsRNA to direct the orientation of Dicer processing. In a
further invention, two terminal DNA bases are located on the 3' end
of the antisense strand in place of two ribonucleotides forming a
blunt end of the duplex on the 5' end of the sense strand and the
3' end of the antisense strand, and a two-nucleotide RNA overhang
is located on the 3'-end of the sense strand. This is also an
asymmetric composition with DNA on the blunt end and RNA bases on
the overhanging end.
[0370] The sense and antisense strands anneal under biological
conditions, such as the conditions found in the cytoplasm of a
cell. In addition, a region of one of the sequences, particularly
of the antisense strand, of the dsRNA has a sequence length of at
least 19 nucleotides, wherein these nucleotides are adjacent to the
3' end of antisense strand and are sufficiently complementary to a
nucleotide sequence of the target RNA.
[0371] Additionally, the DsiRNA agent structure can be optimized to
ensure that the oligonucleotide segment generated from Dicer's
cleavage will be the portion of the oligonucleotide that is most
effective in inhibiting gene expression. For example, in one
embodiment of the invention, a 27-bp oligonucleotide of the DsiRNA
agent structure is synthesized wherein the anticipated 21 to 22-bp
segment that will inhibit gene expression is located on the 3'-end
of the antisense strand. The remaining bases located on the 5'-end
of the antisense strand will be cleaved by Dicer and will be
discarded. This cleaved portion can be homologous (i.e., based on
the sequence of the target sequence) or non-homologous and added to
extend the nucleic acid strand.
[0372] US 2007/0265220 discloses that 27mer DsiRNAs show improved
stability in serum over comparable 21mer siRNA compositions, even
absent chemical modification. Modifications of DsiRNA agents, such
as inclusion of 2'-O-methyl RNA in the antisense strand, in
patterns such as detailed above, when coupled with addition of a 5'
Phosphate, can improve stability of DsiRNA agents. Addition of
5'-phosphate to all strands in synthetic RNA duplexes may be an
inexpensive and physiological method to confer some limited degree
of nuclease stability. The chemical modification patterns of the
DsiRNA agents of the instant invention are designed to enhance the
efficacy of such agents. Accordingly, such modifications are
designed to avoid reducing potency of DsiRNA agents; to avoid
interfering with Dicer processing of DsiRNA agents; to improve
stability in biological fluids (reduce nuclease sensitivity) of
DsiRNA agents; or to block or evade detection by the innate immune
system. Such modifications are also designed to avoid being toxic
and to avoid increasing the cost or impact the ease of
manufacturing the instant DsiRNA agents of the invention.
[0373] RNAi In Vitro Assay to Assess DsiRNA Activity
[0374] An in vitro assay that recapitulates RNAi in a cell-free
system can be used to evaluate DsiRNA constructs targeting an RNA
sequence(s) of interest. The assay comprises the system described
by Tuschl et al., 1999, Genes and Development, 13, 3191-3197 and
Zamore et al., 2000, Cell, 101, 25-33 adapted for use with DsiRNA
agents directed against a target RNA. A Drosophila extract derived
from syncytial blastoderm is used to reconstitute RNAi activity in
vitro. Target RNA is generated via in vitro transcription from an
appropriate target RNA expressing plasmid using T7 RNA polymerase
or via chemical synthesis. Sense and antisense DsiRNA strands (for
example 20 uM each) are annealed by incubation in buffer (such as
100 mM potassium acetate, 30 mM HEPES-KOH, pH 7.4, 2 mM magnesium
acetate) for 1 minute at 90.degree. C. followed by 1 hour at
37.degree. C., then diluted in lysis buffer (for example 100 mM
potassium acetate, 30 mM HEPES-KOH at pH 7.4, 2 mM magnesium
acetate). Annealing can be monitored by gel electrophoresis on an
agarose gel in TBE buffer and stained with ethidium bromide. The
Drosophila lysate is prepared using zero to two-hour-old embryos
from Oregon R flies collected on yeasted molasses agar that are
dechorionated and lysed. The lysate is centrifuged and the
supernatant isolated. The assay comprises a reaction mixture
containing 50% lysate [vol/vol], RNA (10-50 pM final
concentration), and 10% [vol/vol] lysis buffer containing DsiRNA
(10 nM final concentration). The reaction mixture also contains 10
mM creatine phosphate, 10 ug/ml creatine phosphokinase, 100 um GTP,
100 uM UTP, 100 uM CTP, 500 uM ATP, 5 mM DTT, 0.1 U/uL RNasin
(Promega), and 100 uM of each amino acid. The final concentration
of potassium acetate is adjusted to 100 mM. The reactions are
pre-assembled on ice and preincubated at 25.degree. C. for 10
minutes before adding RNA, then incubated at 25.degree. C. for an
additional 60 minutes. Reactions are quenched with 4 volumes of
1.25.times. Passive Lysis Buffer (Promega). Target RNA cleavage is
assayed by RT-PCR analysis or other methods known in the art and
are compared to control reactions in which DsiRNA is omitted from
the reaction.
[0375] Alternately, internally-labeled target RNA for the assay is
prepared by in vitro transcription in the presence of
[alpha-.sup.32P] CTP, passed over a G50 Sephadex column by spin
chromatography and used as target RNA without further purification.
Optionally, target RNA is 5'-.sup.32P-end labeled using T4
polynucleotide kinase enzyme. Assays are performed as described
above and target RNA and the specific RNA cleavage products
generated by RNAi are visualized on an autoradiograph of a gel. The
percentage of cleavage is determined by PHOSPHOR IMAGER.RTM.
(autoradiography) quantitation of bands representing intact control
RNA or RNA from control reactions without DsiRNA and the cleavage
products generated by the assay.
[0376] In one embodiment, this assay is used to determine target
sites in the RNA target of interest for DsiRNA mediated RNAi
cleavage, wherein a plurality of DsiRNA constructs are screened for
RNAi mediated cleavage of the RNA target of interest, for example,
by analyzing the assay reaction by electrophoresis of labeled
target RNA, or by northern blotting, as well as by other
methodology well known in the art.
Structures of dsiRNA-Peptide Agents
[0377] In certain embodiments, the dsRNA agents of the invention
can have any of the following structures:
[0378] In one such embodiment, the dsRNA comprises:
TABLE-US-00034 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0379] In another such embodiment, the dsRNA comprises:
TABLE-US-00035 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0380] In another such embodiment, the dsRNA comprises:
TABLE-US-00036 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0381] In another such embodiment, the dsRNA comprises:
TABLE-US-00037 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0382] In another such embodiment, the dsRNA comprises:
TABLE-US-00038 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0383] In another such embodiment, the dsRNA comprises:
TABLE-US-00039 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0384] In another such embodiment, the dsRNA comprises:
TABLE-US-00040 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0385] In another such embodiment, the dsRNA comprises:
TABLE-US-00041 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0386] In another such embodiment, the dsRNA comprises:
TABLE-US-00042 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0387] In another such embodiment, the dsRNA comprises:
TABLE-US-00043 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
wherein "X"=RNA, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA and
"P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0388] In other embodiments, the DsiRNA comprises:
TABLE-US-00044 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3 '
3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXDD-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXDDP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PYXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXXX-5' or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PYXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-PXXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXX-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3' 3'-XXXXXXXXXXXXXXXXXXXXXXXXXXX-5'
or 5'-XXXXXXXXXXXXXXXXXXXXXXXXX-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5' or
5'-PXXXXXXXXXXXXXXXXXXXXXXXXXP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXXXP-5'
wherein "X"=RNA, "X"=2'-O-methyl RNA, "Y" is an overhang domain
comprised of 1-4 RNA monomers that are optionally 2'-O-methyl RNA
monomers, underlined residues are 2'-O-methyl RNA monomers, "D"=DNA
and "P"=peptide. The top strand is the sense strand, and the bottom
strand is the antisense strand.
[0389] In another embodiment, the dsRNA comprises strands having
equal lengths.
[0390] In one such embodiment, the dsRNA comprises:
TABLE-US-00045 5'-XXXXXXXXXXXXXXXXXXXXXXXXXMMP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXMM-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0391] In one such embodiment, the dsRNA comprises:
TABLE-US-00046 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXMM-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXMM-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0392] In one such embodiment, the dsRNA comprises:
TABLE-US-00047 5'-XXXXXXXXXXXXXXXXXXXXXXXXXMM-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXMMP-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0393] In one such embodiment, the dsRNA comprises:
TABLE-US-00048 5'-XXXXXXXXXXXXXXXXXXXXXXXXXMM-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXMM-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0394] In one such embodiment, the dsRNA comprises:
TABLE-US-00049 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXMMP-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXMM-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0395] In one such embodiment, the dsRNA comprises:
TABLE-US-00050 5'-XXXXXXXXXXXXXXXXXXXXXXXXXMM-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXMMP-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0396] In one such embodiment, the dsRNA comprises:
TABLE-US-00051 5'-PXXXXXXXXXXXXXXXXXXXXXXXXXMMP-3'
3'-PXXXXXXXXXXXXXXXXXXXXXXXXXMMP-5'
wherein "X"=RNA, "M" is Nucleic acid residues (RNA, DNA or
non-natural or modified nucleic acids) and "P"=a peptide. Any such
residues of such agents can optionally be 2'-O-methyl RNA
monomers-alternating positioning of 2'-O-methyl RNA monomers that
commences from the 3'-terminal residue of the bottom (second)
strand, as shown for above asymmetric agents, can also be used in
the above blunt-blunt dsRNA agents.
[0397] The invention also contemplates any of the exemplary
structures recited below, wherein at least one peptide of the
invention is conjugated to at least one end of at least one of the
first or second strand or internally to at least one of the first
or second strand of the dsRNA of the invention.
[0398] In another embodiment, the DsiRNA comprises strands having
equal lengths possessing 1-3 mismatched residues that serve to
orient Dicer cleavage (specifically, one or more of positions 1, 2
or 3 on the first strand of the DsiRNA, when numbering from the
3'-terminal residue, are mismatched with corresponding residues of
the 5'-terminal region on the second strand when first and second
strands are annealed to one another). An exemplary 27mer DsiRNA
agent with two terminal mismatched residues is shown:
TABLE-US-00052 5'-XXXXXXXXXXXXXXXXXXXXXXXXX.sup.M.sup.M-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXX.sub.M.sub.M-5'
wherein "X"=RNA, "M"=Nucleic acid residues (RNA, DNA or non-natural
or modified nucleic acids) that do not base pair (hydrogen bond)
with corresponding "M" residues of otherwise complementary strand
when strands are annealed. Any of the residues of such agents can
optionally be 2'-O-methyl RNA monomers--alternating positioning of
2'-O-methyl RNA monomers that commences from the 3'-terminal
residue of the bottom (second) strand, as shown for above
asymmetric agents, can also be used in the above "blunt/fray"
DsiRNA agent. The top strand (first strand) is the sense strand,
and the bottom strand (second strand) is the antisense strand.
[0399] In certain additional embodiments, the present invention
provides compositions for RNA interference (RNAi) that possess one
or more base paired deoxyribonucleotides within a region of a
double stranded nucleic acid (dsNA) that is positioned 3' of a
projected sense strand Dicer cleavage site and correspondingly 5'
of a projected antisense strand Dicer cleavage site. The
compositions of the invention comprise a dsNA which is a precursor
molecule, i.e., the dsNA of the present invention is processed in
vivo to produce an active small interfering nucleic acid (siRNA).
The dsNA is processed by Dicer to an active siRNA which is
incorporated into RISC.
[0400] In certain embodiments, the DsiRNA agents of the invention
can have any of the following exemplary structures:
[0401] In one such embodiment, the DsiRNA comprises:
TABLE-US-00053 5'-XXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NXX-5'
wherein "X"=RNA, "Y" is an optional overhang domain comprised of
0-10 RNA monomers that are optionally 2'-O-methyl RNA monomers--in
certain embodiments, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA, and
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top
strand is the sense strand, and the bottom strand is the antisense
strand. Alternatively, the bottom strand is the sense strand and
the top strand is the antisense strand.
[0402] In a related embodiment, the DsiRNA comprises:
TABLE-US-00054 5'-XXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NDD-5'
wherein "X"=RNA, "Y" is an optional overhang domain comprised of
0-10 RNA monomers that are optionally 2'-O-methyl RNA monomers--in
certain embodiments, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA, and
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top
strand is the sense strand, and the bottom strand is the antisense
strand. Alternatively, the bottom strand is the sense strand and
the top strand is the antisense strand.
[0403] In another such embodiment, the DsiRNA comprises:
TABLE-US-00055 5'-XXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NZZ-5'
wherein "X"=RNA, "X"=2'-O-methyl RNA, "Y" is an optional overhang
domain comprised of 0-10 RNA monomers that are optionally
2'-O-methyl RNA monomers--in certain embodiments, "Y" is an
overhang domain comprised of 1-4 RNA monomers that are optionally
2'-O-methyl RNA monomers, "D"=DNA, "Z"=DNA or RNA, and "N"=1 to 50
or more, but is optionally 1-8. "N*"=0 to 15 or more, but is
optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top strand
is the sense strand, and the bottom strand is the antisense strand.
Alternatively, the bottom strand is the sense strand and the top
strand is the antisense strand, with 2'-O-methyl RNA monomers
located at alternating residues along the top strand, rather than
the bottom strand presently depicted in the above schematic.
[0404] In another such embodiment, the DsiRNA comprises:
TABLE-US-00056 5'-XXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NZZ-5'
wherein "X"=RNA, "X"=2'-O-methyl RNA, "Y" is an optional overhang
domain comprised of 0-10 RNA monomers that are optionally
2'-O-methyl RNA monomers--in certain embodiments, "Y" is an
overhang domain comprised of 1-4 RNA monomers that are optionally
2'-O-methyl RNA monomers, "D"=DNA, "Z"=DNA or RNA, and "N"=1 to 50
or more, but is optionally 1-8. "N*"=0 to 15 or more, but is
optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top strand
is the sense strand, and the bottom strand is the antisense strand.
Alternatively, the bottom strand is the sense strand and the top
strand is the antisense strand, with 2'-O-methyl RNA monomers
located at alternating residues along the top strand, rather than
the bottom strand presently depicted in the above schematic.
[0405] In another embodiment, the DsiRNA comprises:
TABLE-US-00057 5'-XXXXXXXXXXXXXXXXXXXXXXXX.sub.N*[X1/D1].sub.NDD-3'
3'-YXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*[X2/D2].sub.NZZ-5'
wherein "X"=RNA, "Y" is an optional overhang domain comprised of
0-10 RNA monomers that are optionally 2'-O-methyl RNA monomers--in
certain embodiments, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA,
"Z"=DNA or RNA, and "N"=1 to 50 or more, but is optionally 1-8,
where at least one D1.sub.N is present in the top strand and is
base paired with a corresponding D2.sub.N in the bottom strand.
Optionally, D1.sub.N and D1.sub.N+1 are base paired with
corresponding D2.sub.N and D2.sub.N+1; D1.sub.N, D1.sub.N+1 and
D1.sub.N+2 are base paired with corresponding D2.sub.N, D1.sub.N+1
and D1.sub.N+2, etc. "N*"=0 to 15 or more, but is optionally 0, 1,
2, 3, 4, 5 or 6. In one embodiment, the top strand is the sense
strand, and the bottom strand is the antisense strand.
Alternatively, the bottom strand is the sense strand and the top
strand is the antisense strand, with 2'-O-methyl RNA monomers
located at alternating residues along the top strand, rather than
the bottom strand presently depicted in the above schematic.
[0406] In any of the above-depicted structures, the 5' end of
either the sense strand or antisense strand optionally comprises a
phosphate group.
[0407] In another embodiment, the DNA:DNA-extended DsiRNA comprises
strands having equal lengths possessing 1-3 mismatched residues
that serve to orient Dicer cleavage (specifically, one or more of
positions 1, 2 or 3 on the first strand of the DsiRNA, when
numbering from the 3'-terminal residue, are mismatched with
corresponding residues of the 5'-terminal region on the second
strand when first and second strands are annealed to one another).
An exemplary DNA:DNA-extended DsiRNA agent with two terminal
mismatched residues is shown:
TABLE-US-00058
5'-XXXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.N.sup.M.sup.M-3'
3'-XXXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*D.sub.NM.sub.M-5'
wherein "X"=RNA, "M"=Nucleic acid residues (RNA, DNA or non-natural
or modified nucleic acids) that do not base pair (hydrogen bond)
with corresponding "M" residues of otherwise complementary strand
when strands are annealed, "D"=DNA and "N"=1 to 50 or more, but is
optionally 1-8. "N*"=0 to 15 or more, but is optionally 0, 1, 2, 3,
4, 5 or 6. Any of the residues of such agents can optionally be
2'-O-methyl RNA monomers--alternating positioning of
2'-.beta.-methyl RNA monomers that commences from the 3'-terminal
residue of the bottom (second) strand, as shown for above
asymmetric agents, can also be used in the above "blunt/fray"
DsiRNA agent. In one embodiment, the top strand (first strand) is
the sense strand, and the bottom strand (second strand) is the
antisense strand. Alternatively, the bottom strand is the sense
strand and the top strand is the antisense strand. Modification and
DNA:DNA extension patterns paralleling those shown above for
asymmetric/overhang agents can also be incorporated into such
"blunt/frayed" agents.
[0408] In one embodiment, a length-extended DsiRNA agent is
provided that comprises deoxyribonucleotides positioned at sites
modeled to function via specific direction of Dicer cleavage, yet
which does not require the presence of a base-paired
deoxyribonucleotide in the dsNA structure. An exemplary structure
for such a molecule is shown:
TABLE-US-00059 5'-XXXXXXXXXXXXXXXXXXXDDXX-3'
3'-YXXXXXXXXXXXXXXXXXDDXXXX-5'
wherein "X"=RNA, "Y" is an optional overhang domain comprised of
0-10 RNA monomers that are optionally 2'-O-methyl RNA monomers--in
certain embodiments, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, and "D"=DNA.
In one embodiment, the top strand is the sense strand, and the
bottom strand is the antisense strand. Alternatively, the bottom
strand is the sense strand and the top strand is the antisense
strand. The above structure is modeled to force Dicer to cleave a
minimum of a 21mer duplex as its primary post-processing form. In
embodiments where the bottom strand of the above structure is the
antisense strand, the positioning of two deoxyribonucleotide
residues at the ultimate and penultimate residues of the 5' end of
the antisense strand is likely to reduce off-target effects (as
prior studies have shown a 2'-O-methyl modification of at least the
penultimate position from the 5' terminus of the antisense strand
to reduce off-target effects; see, e.g., US 2007/0223427).
[0409] In one embodiment, the DsiRNA comprises:
TABLE-US-00060 5'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*Y-3'
3'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*-5'
wherein "X"=RNA, "Y" is an optional overhang domain comprised of
0-10 RNA monomers that are optionally 2'-O-methyl RNA monomers--in
certain embodiments, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, "D"=DNA, and
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top
strand is the sense strand, and the bottom strand is the antisense
strand. Alternatively, the bottom strand is the sense strand and
the top strand is the antisense strand.
[0410] In a related embodiment, the DsiRNA comprises:
TABLE-US-00061 5'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*DD-3'
3'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*XX-5'
wherein "X"=RNA, optionally a 2'-O-methyl RNA monomers "D"=DNA,
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top
strand is the sense strand, and the bottom strand is the antisense
strand. Alternatively, the bottom strand is the sense strand and
the top strand is the antisense strand.
[0411] In another such embodiment, the DsiRNA comprises:
TABLE-US-00062 5'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*DD-3'
3'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*ZZ-5'
wherein "X"=RNA, optionally a 2'-O-methyl RNA monomers "D"=DNA,
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. "Z"=DNA or RNA. In one
embodiment, the top strand is the sense strand, and the bottom
strand is the antisense strand. Alternatively, the bottom strand is
the sense strand and the top strand is the antisense strand, with
2'-O-methyl RNA monomers located at alternating residues along the
top strand, rather than the bottom strand presently depicted in the
above schematic.
[0412] In another such embodiment, the DsiRNA comprises:
TABLE-US-00063 5'-D.sub.NZZXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*DD-3'
3'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*ZZ-5'
wherein "X"=RNA, "X"=2'-O-methyl RNA, "D"=DNA, "Z"=DNA or RNA, and
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top
strand is the sense strand, and the bottom strand is the antisense
strand. Alternatively, the bottom strand is the sense strand and
the top strand is the antisense strand, with 2'-O-methyl RNA
monomers located at alternating residues along the top strand,
rather than the bottom strand presently depicted in the above
schematic.
[0413] In another such embodiment, the DsiRNA comprises:
TABLE-US-00064 5'-D.sub.NZZXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*Y-3'
3'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*-5'
wherein "X"=RNA, "X"=2'-O-methyl RNA, "D"=DNA, "Z"=DNA or RNA, and
"N"=1 to 50 or more, but is optionally 1-8. "N*"=0 to 15 or more,
but is optionally 0, 1, 2, 3, 4, 5 or 6. "Y" is an optional
overhang domain comprised of 0-10 RNA monomers that are optionally
2'-O-methyl RNA monomers--in certain embodiments, "Y" is an
overhang domain comprised of 1-4 RNA monomers that are optionally
2'-O-methyl RNA monomers. In one embodiment, the top strand is the
sense strand, and the bottom strand is the antisense strand.
Alternatively, the bottom strand is the sense strand and the top
strand is the antisense strand, with 2'-O-methyl RNA monomers
located at alternating residues along the top strand, rather than
the bottom strand presently depicted in the above schematic.
[0414] In another embodiment, the DsiRNA comprises:
TABLE-US-00065 5'-[X1/D1].sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*DD-3'
3'-[X2/D2].sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*ZZ-5'
wherein "X"=RNA, "D"=DNA, "Z"=DNA or RNA, and "N"=1 to 50 or more,
but is optionally 1-8, where at least one D1.sub.N is present in
the top strand and is base paired with a corresponding D2.sub.N in
the bottom strand. Optionally, D1.sub.N and D 1.sub.N+1 are base
paired with corresponding D2.sub.N and D2.sub.N+1; D1.sub.N,
D1.sub.N+1 and D1.sub.N+2 are base paired with corresponding
D2.sub.N, D1.sub.N+1 and D1.sub.N+2, etc. "N*"=0 to 15 or more, but
is optionally 0, 1, 2, 3, 4, 5 or 6. In one embodiment, the top
strand is the sense strand, and the bottom strand is the antisense
strand. Alternatively, the bottom strand is the sense strand and
the top strand is the antisense strand, with 2'-O-methyl RNA
monomers located at alternating residues along the top strand,
rather than the bottom strand presently depicted in the above
schematic.
[0415] In a related embodiment, the DsiRNA comprises:
TABLE-US-00066 5'-[X1/D1].sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*Y-3'
3'-[X2/D2].sub.NXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*-5'
wherein "X"=RNA, "D"=DNA, "Y" is an optional overhang domain
comprised of 0-10 RNA monomers that are optionally 2'-O-methyl RNA
monomers--in certain embodiments, "Y" is an overhang domain
comprised of 1-4 RNA monomers that are optionally 2'-O-methyl RNA
monomers, and "N"=1 to 50 or more, but is optionally 1-8, where at
least one D1.sub.N is present in the top strand and is base paired
with a corresponding D2.sub.N in the bottom strand. Optionally,
D1.sub.N and D1.sub.N+1 are base paired with corresponding D2.sub.N
and D2.sub.N+1; D1.sub.N; D1.sub.N+1 and D1.sub.N+2 are base paired
with corresponding D2.sub.N, D1.sub.N+1 and D1.sub.N+2, etc. "N*"=0
to 15 or more, but is optionally 0, 1, 2, 3, 4, 5 or 6. In one
embodiment, the top strand is the sense strand, and the bottom
strand is the antisense strand. Alternatively, the bottom strand is
the sense strand and the top strand is the antisense strand, with
2'-O-methyl RNA monomers located at alternating residues along the
top strand, rather than the bottom strand presently depicted in the
above schematic.
[0416] In any of the above-depicted structures, the 5' end of
either the sense strand or antisense strand optionally comprises a
phosphate group.
[0417] In another embodiment, the DNA:DNA-extended DsiRNA comprises
strands having equal lengths possessing 1-3 mismatched residues
that serve to orient Dicer cleavage (specifically, one or more of
positions 1, 2 or 3 on the first strand of the DsiRNA, when
numbering from the 3'-terminal residue, are mismatched with
corresponding residues of the 5'-terminal region on the second
strand when first and second strands are annealed to one another).
An exemplary DNA:DNA-extended DsiRNA agent with two terminal
mismatched residues is shown:
TABLE-US-00067
5'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*.sup.M.sup.M-3'
3'-D.sub.NXXXXXXXXXXXXXXXXXXXXXXXXXX.sub.N*M.sub.M-5'
wherein "X"=RNA, "M"=Nucleic acid residues (RNA, DNA or non-natural
or modified nucleic acids) that do not base pair (hydrogen bond)
with corresponding "M" residues of otherwise complementary strand
when strands are annealed, "D"=DNA and "N"=1 to 50 or more, but is
optionally 1-8. "N*"=0 to 15 or more, but is optionally 0, 1, 2, 3,
4, 5 or 6. Any of the residues of such agents can optionally be
2'-O-methyl RNA monomers--alternating positioning of
2'-.beta.-methyl RNA monomers that commences from the 3'-terminal
residue of the bottom (second) strand, as shown for above
asymmetric agents, can also be used in the above "blunt/fray"
DsiRNA agent. In one embodiment, the top strand (first strand) is
the sense strand, and the bottom strand (second strand) is the
antisense strand. Alternatively, the bottom strand is the sense
strand and the top strand is the antisense strand. Modification and
DNA:DNA extension patterns paralleling those shown above for
asymmetric/overhang agents can also be incorporated into such
"blunt/frayed" agents.
[0418] In another embodiment, a length-extended DsiRNA agent is
provided that comprises deoxyribonucleotides positioned at sites
modeled to function via specific direction of Dicer cleavage, yet
which does not require the presence of a base-paired
deoxyribonucleotide in the dsNA structure. An exemplary structure
for such a molecule is shown:
TABLE-US-00068 5'-XXDDXXXXXXXXXXXXXXXXXXXX.sub.N*Y-3'
3'-DDXXXXXXXXXXXXXXXXXXXXXX.sub.N*-5'
wherein "X"=RNA, "Y" is an optional overhang domain comprised of
0-10 RNA monomers that are optionally 2'-O-methyl RNA monomers--in
certain embodiments, "Y" is an overhang domain comprised of 1-4 RNA
monomers that are optionally 2'-O-methyl RNA monomers, and "D"=DNA.
"N*"=0 to 15 or more, but is optionally 0, 1, 2, 3, 4, 5 or 6. In
one embodiment, the top strand is the sense strand, and the bottom
strand is the antisense strand. Alternatively, the bottom strand is
the sense strand and the top strand is the antisense strand. The
above structure is modeled to force Dicer to cleave a minimum of a
21mer duplex as its primary post-processing form. In embodiments
where the bottom strand of the above structure is the antisense
strand, the positioning of two deoxyribonucleotide residues at the
ultimate and penultimate residues of the 5' end of the antisense
strand is likely to reduce off-target effects (as prior studies
have shown a 2'-O-methyl modification of at least the penultimate
position from the 5' terminus of the antisense strand to reduce
off-target effects; see, e.g., US 2007/0223427).
[0419] In certain embodiments, the "D" residues of any of the above
structures include at least one PS-DNA or PS-RNA. Optionally, the
"D" residues of any of the above structures include at least one
modified nucleotide that inhibits Dicer cleavage.
[0420] While the above-described "DNA-extended" DsiRNA agents can
be categorized as either "left extended" or "right extended",
DsiRNA agents comprising both left- and right-extended
DNA-containing sequences within a single agent (e.g., both flanks
surrounding a core dsRNA structure are dsDNA extensions) can also
be generated and used in similar manner to those described herein
for "right-extended" and "left-extended" agents.
[0421] In some embodiments, the DsiRNA of the instant invention
further comprises a linking moiety or domain that joins the sense
and antisense strands of a DNA:DNA-extended DsiRNA agent.
Optionally, such a linking moiety domain joins the 3' end of the
sense strand and the 5' end of the antisense strand. The linking
moiety may be a chemical (non-nucleotide) linker, such as an
oligomethylenediol linker, oligoethylene glycol linker, or other
art-recognized linker moiety. Alternatively, the linker can be a
nucleotide linker, optionally including an extended loop and/or
tetraloop.
[0422] In one embodiment, the DsiRNA agent has an asymmetric
structure, with the sense strand having a 25-base pair length, and
the antisense strand having a 27-base pair length with a 1-4 base
3'-overhang (e.g., a one base 3'-overhang, a two base 3'-overhang,
a three base 3'-overhang or a four base 3'-overhang). In another
embodiment, this DsiRNA agent has an asymmetric structure further
containing 2 deoxynucleotides at the 3' end of the sense
strand.
[0423] In another embodiment, the DsiRNA agent has an asymmetric
structure, with the antisense strand having a 25-base pair length,
and the sense strand having a 27-base pair length with a 1-4 base
3'-overhang (e.g., a one base 3'-overhang, a two base 3'-overhang,
a three base 3'-overhang or a four base 3'-overhang). In another
embodiment, this DsiRNA agent has an asymmetric structure further
containing 2 deoxynucleotides at the 3' end of the antisense
strand.
[0424] For the above blunt/fray agents of the invention, it is
recognized that the precise sequence of a frayed end structure is
not critical to efficacy, e.g., one or two of the 3'-terminal
residues of the first strand only need to be non-complementary to
the corresponding 5'-terminal residues of the second strand. In
certain embodiments, the DsiRNA agents of the invention require,
e.g., at least 19, at least 20, at least 21, at least 22, at least
23, at least 24, at least 25 or at least 26 residues of the first
strand to be complementary to corresponding residues of the second
strand. In certain related embodiments, these first strand residues
complementary to corresponding residues of the second strand are
optionally consecutive residues. Additionally and/or alternatively,
certain mismatch residues can also be positioned within, e.g., the
5' half of the sense strand, meaning that in certain embodiments,
perfect complementarity between first and second strands does not
hold across the entirety of the first and second strands even
exclusive of a fray structure at the 3' terminus of the first
strand/5' terminus of the second strand--in such embodiments, the
first strand can be an effective first strand while the extent of
complementarity between first and second strands across
residues--optionally exclusive of the two 3'-terminal residues of
the first strand/two 5'-terminal residues of the second strand for
frayed agents--is at least 80% of residues, at least 85% of
residues, at least 90% of residues, at least 90% of residues, at
least 96% of residues. In certain embodiments, the extent of
complementarity of the second strand of a DsiRNA of the invention
relative to the first strand or relative to the target RNA sequence
can be a level of complementarity with the first strand or with the
target RNA sequence equivalent to that described above for the
first strand of such DsiRNAs.
RNA Processing
[0425] siRNA
[0426] The process of siRNA-mediated RNAi is triggered by the
presence of long, dsRNA molecules in a cell. During the initiation
step of RNAi, these dsRNA molecules are cleaved into 21-23
nucleotide (nt) small-interfering RNA duplexes (siRNAs) by Dicer, a
conserved family of enzymes containing two RNase III-like domains
(Bernstein et al. 2001; Elbashir et al. 2001). The siRNAs are
characterized by a 19-21 base pair duplex region and 2 nucleotide
3' overhangs on each strand. During the effector step of RNAi, the
siRNAs become incorporated into a multimeric protein complex called
RNA-induced silencing complex (RISC), where they serve as guides to
select fully complementary mRNA substrates for degradation.
Degradation is initiated by endonucleolytic cleavage of the mRNA
within the region complementary to the siRNA. More precisely, the
mRNA is cleaved at a position 10 nucleotides from the 5' end of the
guiding siRNA (Elbashir et al. 2001 Genes & Dev. 15: 188-200;
Nykanen et al. 2001 Cell 107: 309-321; Martinez et al. 2002 Cell
110: 563-574). An endonuclease responsible for this cleavage was
identified as Argonaute2 (Ago2; Liu et al. Science, 305:
1437-41).
miRNA
[0427] The majority of human miRNAs (70%)--and presumably the
majority of miRNAs of other mammals--are transcribed from introns
and/or exons, and approximately 30% are located in intergenic
regions (Rodriguez et al., Genome Res. 2004, 14(10A), 1902-1910).
In human and animal, miRNAs are usually transcribed by RNA
polymerase II (Farh et al. Science 2005, 310(5755), 1817-1821), and
in some cases by pol III (Borchert et al. Nat. Struct. Mol. Biol.
2006, 13(12), 1097-1101). Certain viral encoded miRNAs are
transcribed by RNA polymerase III (Pfeffer et al. Nat. Methods
2005, 2(4), 269-276; Andersson et al. J. Virol. 2005, 79(15),
9556-9565), and some are located in the open reading frame of viral
gene (Pfeffer et al. Nat. Methods 2005, 2(4), 269-276; Samols et
al. J. Virol. 2005, 79(14), 9301-9305). miRNA transcription results
in the production of large monocistronic, bicistronic or
polycistronic primary transcripts (pri-miRNAs). A single pri-miRNA
may range from approximately 200 nucleotides (nt) to several
kilobases (kb) in length and have both a 5' 7-methylguanosine (m7)
caps and a 3' poly (A) tail. Characteristically, the mature miRNA
sequences are localized to regions of imperfect stem-loop sequences
within the pri-miRNAs (Cullen, Mol. Cell. 2004, 16(6),
861-865).
[0428] The first step of miRNA maturation in the nucleus is the
recognition and cleavage of the pri-miRNAs by the RNase III
Drosha-DGCR8 nuclear microprocessor complex, which releases a
.about.70 nt hairpin-containing precursor molecule called
pre-miRNAs, with a monophosphate at the 5' terminus and a 2-nt
overhang with a hydroxyl group at the 3' terminus (Cai et al. RNA
2004, 10(12), 1957-1966; Lee et al. Nature 2003, 425(6956),
415-419; Kim Nat. Rev. Mol. Cell. Biol. 2005, 6(5), 376-385). The
next step is the nuclear transport of the pre-miRNAs out of the
nucleus into the cytoplasm by Exportin-5, a carrier protein (Yi et
al. Genes. Dev. 2003, 17(24), 3011-3016, Bohnsack et al. RNA 2004,
10(2), 185-191). Exportin-5 and the GTP-bound form of its cofactor
Ran together recognize and bind the 2 nucleotide 3' overhang and
the adjacent stem that are characteristics of pre-miRNA (Basyuk et
al. Nucl. Acids Res. 2003, 31(22), 6593-6597, Zamore Mol. Cell.
2001, 8(6), 1158-1160). In the cytoplasm, GTP hydrolysis results in
release of the pre-miRNA, which is then processed by a cellular
endonuclease III enzyme Dicer (Bohnsack et al.). Dicer was first
recognized for its role in generating siRNAs that mediate RNA
interference (RNAi). Dicer acts in concert with its cofactors TRBP
(Transactivating region binding protein; Chendrimata et al. Nature
2005, 436(7051), 740-744) and PACT (interferon-inducible double
strand-RNA-dependant protein kinase activator; Lee et al. EMBO J.
2006, 25(3), 522-532). These enzymes bind at the 3' 2 nucleotide
overhang at the base of the pre-miRNA hairpin and remove the
terminal loop, yielding an approximately 21-nt miRNA duplex
intermediate with both termini having 5' monophosphates, 3' 2
nucleotide overhangs and 3' hydroxyl groups. The miRNA guide
strand, the 5' terminus of which is energetically less stable, is
then selected for incorporation into the RISC(RNA-induced silencing
complex), while the `passenger` strand is released and degraded
(Maniataki et al. Genes. Dev. 2005, 19(24), 2979-2990; Hammond et
al. Nature 2000, 404(6775), 293-296). The composition of RISC
remains incompletely defined, but a key component is a member of
the Argonaute (Ago) protein family (Maniataki et al.; Meister et
al. Mol. Cell. 2004, 15(2), 185-197).
[0429] The mature miRNA then directs RISC to complementary mRNA
species. If the target mRNA has perfect complementarity to the
miRNA-armed RISC, the mRNA will be cleaved and degraded (Zeng et
al. Proc. Natl. Acad. Sci. USA 2003, 100(17), 9779-9784; Hutvagner
et al. Science 2002, 297(55 89), 2056-2060). But as the most common
situation in mammalian cells, the miRNAs targets mRNAs with
imperfect complementarity and suppress their translation, resulting
in reduced expression of the corresponding proteins (Yekta et al.
Science 2004, 304(5670), 594-596; Olsen et al. Dev. Biol. 1999,
216(2), 671-680). The 5' region of the miRNA, especially the match
between miRNA and target sequence at nucleotides 2-7 or 8 of miRNA
(starting from position 1 at the 5' terminus), which is called the
seed region, is essentially important for miRNA targeting, and this
seed match has also become a key principle widely used in computer
prediction of the miRNA targeting (Lewis et al. Cell 2005, 120(1),
15-20; Brennecke et al. PLoS Biol. 2005, 3(3), e85). miRNA
regulation of the miRNA-mRNA duplexes is mediated mainly through
multiple complementary sites in the 3' UTRs, but there are many
exceptions. miRNAs may also bind the 5' UTR and/or the coding
region of mRNAs, resulting in a similar outcome (Lytle et al. Proc.
Natl. Acad. Sci. USA 2007, 104(23), 9667-9672).
RNase H
[0430] RNase H is a ribonuclease that cleaves the 3'-O--P bond of
RNA in a DNA/RNA duplex to produce 3'-hydroxyl and 5'-phosphate
terminated products. RNase H is a non-specific endonuclease and
catalyzes cleavage of RNA via a hydrolytic mechanism, aided by an
enzyme-bound divalent metal ion. Members of the RNase H family are
found in nearly all organisms, from archaea and prokaryotes to
eukaryotes. During DNA replication, RNase H is believed to cut the
RNA primers responsible for priming generation of Okazaki
fragments; however, the RNase H enzyme may be more generally
employed to cleave any DNA:RNA hybrid sequence of sufficient length
(e.g., typically DNA:RNA hybrid sequences of 4 or more base pairs
in length in mammals).
MicroRNA and MicroRNA-Like Therapeutics
[0431] MicroRNAs (miRNAs) have been described to act by binding to
the 3' UTR of a template transcript, thereby inhibiting expression
of a protein encoded by the template transcript by a mechanism
related to but distinct from classic RNA interference.
Specifically, miRNAs are believed to act by reducing translation of
the target transcript, rather than by decreasing its stability.
Naturally-occurring miRNAs are typically approximately 22 nt in
length. It is believed that they are derived from larger precursors
known as small temporal RNAs (stRNAs) approximately 70 nt long.
[0432] Interference agents such as siRNAs, and more specifically
such as miRNAs, that bind within the 3' UTR (or elsewhere in a
target transcript, e.g., in repeated elements of, e.g., Notch
and/or transcripts of the Notch family) and inhibit translation may
tolerate a larger number of mismatches in the siRNA/template
(miRNA/template) duplex, and particularly may tolerate mismatches
within the central region of the duplex. In fact, there is evidence
that some mismatches may be desirable or required, as naturally
occurring stRNAs frequently exhibit such mismatches, as do miRNAs
that have been shown to inhibit translation in vitro (Zeng et al.,
Molecular Cell, 9: 1-20). For example, when hybridized with the
target transcript, such miRNAs frequently include two stretches of
perfect complementarity separated by a region of mismatch. Such a
hybridized complex commonly includes two regions of perfect
complementarily (duplex portions) comprising nucleotide pairs, and
at least a single mismatched base pair, which may be, e.g., G:A,
G:U, G:G, A:A, A:C, U:U, U:C, C:C, G:-, A:-, U:-, C:-, etc. Such
mismatched nucleotides, especially if present in tandem (e.g., a
two, three or four nucleotide area of mismatch) can form a bulge
that separates duplex portions which are located on either flank of
such a bulge. A variety of structures are possible. For example,
the miRNA may include multiple areas of nonidentity (mismatch). The
areas of nonidentity (mismatch) need not be symmetrical in the
sense that both the target and the miRNA include nonpaired
nucleotides. For example, structures have been described in which
only one strand includes nonpaired nucleotides (Zeng et al., FIG.
14). Typically the stretches of perfect complementarily within a
miRNA agent are at least 5 nucleotides in length, e.g., 6, 7, or
more nucleotides in length, while the regions of mismatch may be,
for example, 1, 2, 3, or 4 nucleotides in length.
[0433] In general, any particular siRNA could function to inhibit
gene expression both via (i) the "classical" siRNA pathway, in
which stability of a target transcript is reduced and in which
perfect complementarily between the siRNA and the target is
frequently preferred, and also by (ii) the "alternative" pathway
(generally characterized as the miRNA pathway in animals), in which
translation of a target transcript is inhibited. Generally, the
transcripts targeted by a particular siRNA via mechanism (i) would
be distinct from the transcript targeted via mechanism (ii),
although it is possible that a single transcript could contain
regions that could serve as targets for both the classical and
alternative pathways. (Note that the terms "classical" and
"alternative" are used merely for convenience and generally are
believed to reflect historical timing of discovery of such
mechanisms in animal cells, but do not reflect the importance,
effectiveness, or other features of either mechanism.) One common
goal of siRNA design has been to target a single transcript with
great specificity, via mechanism (i), while minimizing off-target
effects, including those effects potentially elicited via mechanism
(ii). However, it is among the goals of the instant invention to
provide RNA interference agents that possess mismatch residues by
design, either for purpose of mimicking the activities of
naturally-occurring miRNAs, or to create agents directed against
target RNAs for which no corresponding miRNA is presently known,
with the inhibitory and/or therapeutic efficacies/potencies of such
"DmiRNA" agents tolerant of, and indeed possibly enhanced by, such
mismatches.
[0434] The tolerance of miRNA agents for mismatched nucleotides
(and, indeed the existence and natural use of mechanism (ii) above
in the cell) suggests the use of miRNAs in manners that are
advantageous to and/or expand upon the "classical" use of perfectly
complementary siRNAs that act via mechanism (i). Because miRNAs are
naturally occurring molecules, there are likely to be distinct
advantages in applying miRNAs as therapeutic agents. miRNAs benefit
from hundreds of millions of years of evolutionary "fine tuning" of
their function. Thus, sequence-specific "off target" effects should
not be an issue with naturally occurring miRNAs, nor, by extension,
with synthetic DmiRNAs of the invention designed to directly mimic
naturally occurring miRNAs. In addition, miRNAs have evolved to
modulate the expression of groups of genes, driving both up and
down regulation (in certain instances, performing both functions
concurrently within a cell with a single miRNA acting promiscuously
upon multiple target RNAs), with the result that complex cell
functions can be precisely modulated. Such replacement of naturally
occurring miRNAs can involve introducing synthetic miRNAs or miRNA
mimetics (e.g., DmiRNAs) into diseased tissues in an effort to
restore normal proliferation, apoptosis, cell cycle, and other
cellular functions that have been affected by down-regulation of
one or more miRNAs. In certain instances, reactivation of these
miRNA-regulated pathways has produced a significant therapeutic
response (e.g., In one study on cardiac hypertrophy, overexpression
of miR-133 by adenovirus-mediated delivery of a miRNA expression
cassette protected animals from agonist-induced cardiac
hypertrophy, whereas reciprocally reduction of miR-133 in wild-type
mice by antagomirs caused an increase in hypertrophic markers (Care
et al. Nat. Med. 13: 613-618)).
[0435] To date, more than 600 miRNAs have been identified as
encoded within the human genome, with such miRNAs expressed and
processed by a combination of proteins in the nucleus and
cytoplasm. miRNAs are highly conserved among vertebrates and
comprise approximately 2% of all mammalian genes. Since each miRNA
appears to regulate the expression of multiple, e.g., two, three,
four, five, six, seven, eight, nine or even tens to hundreds of
different genes, miRNAs can function as "master-switches",
efficiently regulating and coordinating multiple cellular pathways
and processes. By coordinating the expression of multiple genes,
miRNAs play key roles in embryonic development, immunity,
inflammation, as well as cellular growth and proliferation.
[0436] Expression and functional studies suggest that the altered
expression of specific miRNAs is critical to a variety of human
diseases. Mounting evidence indicates that the introduction of
specific miRNAs into disease cells and tissues can induce favorable
therapeutic responses (Pappas et al., Expert Opin Ther Targets. 12:
115-27). The promise of miRNA therapy is perhaps greatest in cancer
due to the apparent role of certain miRNAs as tumor suppressors.
The rationale for miRNA-based therapeutics for, e.g., cancer is
supported, at least in part, by the following observations: [0437]
(1) miRNAs are frequently mis-regulated and expressed at altered
levels in diseased tissues when compared to normal tissues. A
number of studies have shown altered levels of miRNAs in cancerous
tissues relative to their corresponding normal tissues. Often,
altered expression is the consequence of genetic mutations that
lead to increased or reduced expression of particular miRNAs.
Diseases that possess unique miRNA expression signatures can be
exploited as diagnostic and prognostic markers, and can be targeted
with the DsiRNA (DmiRNA) agents of the invention. [0438] (2)
Mis-regulated miRNAs contribute to cancer development by
functioning as oncogenes or tumor suppressors. Oncogenes are
defined as genes whose over-expression or inappropriate activation
leads to oncogenesis. Tumor suppressors are genes that are required
to keep cells from being cancerous; the down-regulation or
inactivation of tumor suppressors is a common inducer of cancer.
Both types of genes represent preferred drug targets, as such
targeting can specifically act upon the molecular basis for a
particular cancer. Examples of oncogenic miRNAs are miR-155 and
miR-17-92; let-7 is an example of a tumor suppressive miRNA. [0439]
(3) Administration of miRNA induces a therapeutic response by
blocking or reducing tumor growth in pre-clinical animal studies.
The scientific literature provides proof-of-concept studies
demonstrating that restoring miRNA function can prevent or reduce
the growth of cancer cells in vitro and also in animal models. A
well-characterized example is the anti-tumor activity of let-7 in
models for breast and lung cancer. DsiRNAs (DmiRNAs) of the
invention which are designed to mimic let-7 can be used to target
such cancers, and it is also possible to use the DsiRNA design
parameters described herein to generate new DsiRNA (DmiRNA) agents
directed against target RNAs for which no counterpart naturally
occurring miRNA is known (e.g., repeats within Notch or other
transcripts), to screen for therapeutic lead compounds, e.g.,
agents that are capable of reducing tumor burden in pre-clinical
animal models. [0440] (4) A given miRNA controls multiple cellular
pathways and therefore may have superior therapeutic activity.
Based on their biology, miRNAs can function as "master switches" of
the genome, regulating multiple gene products and coordinating
multiple pathways. Genes regulated by miRNAs include genes that
encode conventional oncogenes and tumor suppressors, many of which
are individually pursued as drug targets by the pharmaceutical
industry. Thus, miRNA therapeutics could possess activity superior
to siRNAs and other forms of lead compounds by targeting multiple
disease and/or cancer-associated genes. Given the observation that
mis-regulation of miRNAs is frequently an early event in the
process of tumorigenesis, miRNA therapeutics, which replace missing
miRNAs, may be the most appropriate therapy. [0441] (5) miRNAs are
natural molecules and are therefore less prone to induce
non-specific side-effects. Millions of years of evolution helped to
develop the regulatory network of miRNAs, fine-tuning the
interaction of miRNA with target messenger RNAs. Therefore, miRNAs
and miRNA derivatives (e.g., DmiRNAs designed to mimic naturally
occurring miRNAs) will have few if any sequence-specific
"off-target" effects when applied in the proper context.
[0442] The physical characteristics of siRNAs and miRNAs are
similar. Accordingly, technologies that are effective in delivering
siRNAs (e.g., DsiRNAs of the invention) are likewise effective in
delivering synthetic miRNAs (e.g., DmiRNAs of the invention).
Conjugation and Delivery of DsiRNA Agents
[0443] In certain embodiments the present invention relates to a
method for treating a subject having a disease or disorder, or at
risk of developing a disease or disorder. In such embodiments, the
DsiRNA can act as novel therapeutic agents for controlling the
disease or disorder. The method comprises administering a
pharmaceutical composition of the invention to the patient (e.g.,
human), such that the expression, level and/or activity of a target
RNA is reduced. The expression, level and/or activity of a
polypeptide encoded by an RNA of interest might also be reduced by
a DsiRNA of the instant invention, even where said DsiRNA is
directed against a non-coding region of the transcript (e.g., a
targeted 5' UTR or 3' UTR sequence). Because of their high
specificity, the DsiRNAs of the present invention can specifically
target a sequence of interest of cells and tissues, optionally in
an allele-specific manner where polymorphic alleles exist within an
individual and/or population.
[0444] In the treatment of a disease or disorder, the DsiRNA can be
brought into contact with the cells or tissue of a subject, e.g.,
the cells or tissue of a subject exhibiting disregulation of a
protein and/or otherwise targeted for reduction of protein levels.
For example, DsiRNA substantially identical to all or part of an
RNA sequence of interest, may be brought into contact with or
introduced into such a cell, either in vivo or in vitro. Similarly,
DsiRNA substantially identical to all or part of an RNA sequence of
interest may be administered directly to a subject having or at
risk of developing a disease or disorder.
[0445] Therapeutic use of the DsiRNA agents of the instant
invention can involve use of formulations of DsiRNA agents
comprising multiple different DsiRNA agent sequences. For example,
two or more, three or more, four or more, five or more, etc. of the
presently described agents can be combined to produce a formulation
that, e.g., targets multiple different regions of a target RNA, or
that not only target an RNA of interest but also target, e.g.,
cellular target genes associated with a disease or disorder
associated with a target RNA of interest. A DsiRNA agent of the
instant invention may also be constructed such that either strand
of the DsiRNA agent independently targets two or more regions of an
RNA target, or such that one of the strands of the DsiRNA agent
targets a cellular target gene of a target mRNA known in the
art.
[0446] Use of multifunctional DsiRNA molecules that target more
then one region of a target nucleic acid molecule can also provide
potent inhibition of RNA levels and expression. For example, a
single multifunctional DsiRNA construct of the invention can target
both.
[0447] Thus, the DsiRNA agents of the instant invention,
individually, or in combination or in conjunction with other drugs,
can be used to treat, inhibit, reduce, or prevent a disease or
disorder-associated with a target RNA. For example, the DsiRNA
molecules can be administered to a subject or can be administered
to other appropriate cells evident to those skilled in the art,
individually or in combination with one or more drugs under
conditions suitable for the treatment.
[0448] The DsiRNA molecules also can be used in combination with
other known treatments to treat, inhibit, reduce, or prevent a
disease or disorder associated with a target RNA in a subject or
organism. For example, the described molecules could be used in
combination with one or more known compounds, treatments, or
procedures to treat, inhibit, reduce, or prevent a disease or
disorder associated with a target RNA in a subject or organism as
are known in the art.
[0449] A DsiRNA agent of the invention can be conjugated (e.g., at
its 5' or 3' terminus of its sense or antisense strand) or
unconjugated to another moiety (e.g. a non-nucleic acid moiety such
as a peptide), an organic compound (e.g., a dye, cholesterol, or
the like). Modifying DsiRNA agents in this way may improve cellular
uptake or enhance cellular targeting activities of the resulting
DsiRNA agent derivative as compared to the corresponding
unconjugated DsiRNA agent, are useful for tracing the DsiRNA agent
derivative in the cell, or improve the stability of the DsiRNA
agent derivative compared to the corresponding unconjugated DsiRNA
agent.
[0450] The invention also contemplates dsRNA-peptide conjugates
further conjugated to a therapeutic agent, for example an agent
that treats or ameliorates the symptoms and/or progression of a
disease, for example cancer.
Methods of Introducing Nucleic Acids, Vectors, and Host Cells
[0451] DsiRNA agents of the invention may be directly introduced
into a cell (i.e., intracellularly); or introduced extracellularly
into a cavity, interstitial space, into the circulation of an
organism, introduced orally, or may be introduced by bathing a cell
or organism in a solution containing the nucleic acid. Vascular or
extravascular circulation, the blood or lymph system, and the
cerebrospinal fluid are sites where the nucleic acid may be
introduced.
[0452] The DsiRNA agents of the invention can be introduced using
nucleic acid delivery methods known in art including injection of a
solution containing the nucleic acid, bombardment by particles
covered by the nucleic acid, soaking the cell or organism in a
solution of the nucleic acid, or electroporation of cell membranes
in the presence of the nucleic acid. Other methods known in the art
for introducing nucleic acids to cells may be used, such as
lipid-mediated carrier transport, chemical-mediated transport, and
cationic liposome transfection such as calcium phosphate, and the
like. The nucleic acid may be introduced along with other
components that perform one or more of the following activities:
enhance nucleic acid uptake by the cell or otherwise increase
inhibition of the target RNA.
[0453] A cell having a target RNA may be from the germ line or
somatic, totipotent or pluripotent, dividing or non-dividing,
parenchyma or epithelium, immortalized or transformed, or the like.
The cell may be a stem cell or a differentiated cell. Cell types
that are differentiated include adipocytes, fibroblasts, myocytes,
cardiomyocytes, endothelium, neurons, glia, blood cells,
megakaryocytes, lymphocytes, macrophages, neutrophils, eosinophils,
basophils, mast cells, leukocytes, granulocytes, keratinocytes,
chondrocytes, osteoblasts, osteoclasts, hepatocytes, and cells of
the endocrine or exocrine glands.
[0454] Depending on the particular target RNA sequence and the dose
of DsiRNA agent material delivered, this process may provide
partial or complete loss of function for the RNA. A reduction or
loss of RNA levels or expression (either RNA expression or encoded
polypeptide expression) in at least 50%, 60%, 70%, 80%, 90%, 95% or
99% or more of targeted cells is exemplary. Inhibition of RNA
levels or expression refers to the absence (or observable decrease)
in the level of RNA or RNA-encoded protein. Specificity refers to
the ability to inhibit the RNA without manifest effects on other
genes of the cell. The consequences of inhibition can be confirmed
by examination of the outward properties of the cell or organism or
by biochemical techniques such as RNA solution hybridization,
nuclease protection, Northern hybridization, reverse transcription,
gene expression monitoring with a microarray, antibody binding,
enzyme linked immunosorbent assay (ELISA), Western blotting,
radioimmunoassay (RIA), other immunoassays, and fluorescence
activated cell analysis (FACS). Inhibition of target RNA
sequence(s) by the DsiRNA agents of the invention also can be
measured based upon the effect of administration of such DsiRNA
agents upon development/progression of a disease or disorder
associated with a target RNA of interest, e.g., tumor formation,
growth, metastasis, etc., either in vivo or in vitro. Treatment
and/or reductions in tumor or cancer cell levels can include
halting or reduction of growth of tumor or cancer cell levels or
reductions of, e.g., 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%,
95% or 99% or more, and can also be measured in logarithmic terms,
e.g., 10-fold, 100-fold, 1000-fold, 10.sup.5-fold, 10.sup.6-fold,
10.sup.7-fold reduction in cancer cell levels could be achieved via
administration of the DsiRNA agents of the invention to cells, a
tissue, or a subject.
[0455] For RNA-mediated inhibition in a cell line or whole
organism, expression a reporter or drug resistance gene whose
protein product is easily assayed can be measured. Such reporter
genes include acetohydroxyacid synthase (AHAS), alkaline
phosphatase (AP), beta galactosidase (LacZ), beta glucoronidase
(GUS), chloramphenicol acetyltransferase (CAT), green fluorescent
protein (GFP), horseradish peroxidase (HRP), luciferase (Luc),
nopaline synthase (NOS), octopine synthase (OCS), and derivatives
thereof. Multiple selectable markers are available that confer
resistance to ampicillin, bleomycin, chloramphenicol, gentamycin,
hygromycin, kanamycin, lincomycin, methotrexate, phosphinothricin,
puromycin, and tetracyclin. Depending on the assay, quantitation of
the amount of gene expression allows one to determine a degree of
inhibition which is greater than 10%, 33%, 50%, 90%, 95% or 99% as
compared to a cell not treated according to the present
invention.
[0456] Lower doses of injected material and longer times after
administration of RNA silencing agent may result in inhibition in a
smaller fraction of cells (e.g., at least 10%, 20%, 50%, 75%, 90%,
or 95% of targeted cells). Quantitation of gene expression in a
cell may show similar amounts of inhibition at the level of
accumulation of target RNA or translation of target protein. As an
example, the efficiency of inhibition may be determined by
assessing the amount of gene product in the cell; RNA may be
detected with a hybridization probe having a nucleotide sequence
outside the region used for the inhibitory DsiRNA, or translated
polypeptide may be detected with an antibody raised against the
polypeptide sequence of that region.
[0457] The DsiRNA agent may be introduced in an amount which allows
delivery of at least one copy per cell. Higher doses (e.g., at
least 5, 10, 100, 500 or 1000 copies per cell) of material may
yield more effective inhibition; lower doses may also be useful for
specific applications.
Pharmaceutical Compositions
[0458] In certain embodiments, the present invention provides for a
pharmaceutical composition comprising the dsRNA-peptide agents of
the present invention. The dsRNA-peptide agent sample can be
suitably formulated and introduced into the environment of the cell
by any means that allows for a sufficient portion of the sample to
enter the cell to induce gene silencing, if it is to occur. Many
formulations for dsRNA are known in the art and can be used so long
as the dsRNA gains entry to the target cells so that it can act.
See, e.g., U.S. published patent application Nos. 2004/0203145 A1
and 2005/0054598 A1. For example, the dsRNA-peptide agent of the
instant invention can be formulated in buffer solutions such as
phosphate buffered saline solutions, liposomes, micellar
structures, and capsids. Formulations of DsiRNA agent with cationic
lipids can be used to facilitate transfection of the DsiRNA agent
into cells. For example, cationic lipids, such as lipofectin (U.S.
Pat. No. 5,705,188), cationic glycerol derivatives, and
polycationic molecules, such as polylysine (published PCT
International Application WO 97/30731), can be used. Suitable
lipids include Oligofectamine, Lipofectamine (Life Technologies),
NC388 (Ribozyme Pharmaceuticals, Inc., Boulder, Colo.), or FuGene 6
(Roche) all of which can be used according to the manufacturer's
instructions.
[0459] Such compositions typically include the nucleic acid
molecule and a pharmaceutically acceptable carrier. As used herein
the language "pharmaceutically acceptable carrier" includes saline,
solvents, dispersion media, coatings, antibacterial and antifungal
agents, isotonic and absorption delaying agents, and the like,
compatible with pharmaceutical administration. Supplementary active
compounds can also be incorporated into the compositions.
[0460] A pharmaceutical composition is formulated to be compatible
with its intended route of administration. Examples of routes of
administration include parenteral, e.g., intravenous, intradermal,
subcutaneous, oral (e.g., inhalation), transdermal (topical),
transmucosal, and rectal administration. Solutions or suspensions
used for parenteral, intradermal, or subcutaneous application can
include the following components: a sterile diluent such as water
for injection, saline solution, fixed oils, polyethylene glycols,
glycerine, propylene glycol or other synthetic solvents;
antibacterial agents such as benzyl alcohol or methyl parabens;
antioxidants such as ascorbic acid or sodium bisulfite; chelating
agents such as ethylenediaminetetraacetic acid; buffers such as
acetates, citrates or phosphates and agents for the adjustment of
tonicity such as sodium chloride or dextrose. pH can be adjusted
with acids or bases, such as hydrochloric acid or sodium hydroxide.
The parenteral preparation can be enclosed in ampoules, disposable
syringes or multiple dose vials made of glass or plastic.
[0461] Pharmaceutical compositions suitable for injectable use
include sterile aqueous solutions (where water soluble) or
dispersions and sterile powders for the extemporaneous preparation
of sterile injectable solutions or dispersion. For intravenous
administration, suitable carriers include physiological saline,
bacteriostatic water, Cremophor EL.TM. (BASF, Parsippany, N.J.) or
phosphate buffered saline (PBS). In all cases, the composition must
be sterile and should be fluid to the extent that easy
syringability exists. It should be stable under the conditions of
manufacture and storage and must be preserved against the
contaminating action of microorganisms such as bacteria and fungi.
The carrier can be a solvent or dispersion medium containing, for
example, water, ethanol, polyol (for example, glycerol, propylene
glycol, and liquid polyethylene glycol, and the like), and suitable
mixtures thereof. The proper fluidity can be maintained, for
example, by the use of a coating such as lecithin, by the
maintenance of the required particle size in the case of dispersion
and by the use of surfactants. Prevention of the action of
microorganisms can be achieved by various antibacterial and
antifungal agents, for example, parabens, chlorobutanol, phenol,
ascorbic acid, thimerosal, and the like. In many cases, it will be
preferable to include isotonic agents, for example, sugars,
polyalcohols such as mannitol, sorbitol, sodium chloride in the
composition. Prolonged absorption of the injectable compositions
can be brought about by including in the composition an agent which
delays absorption, for example, aluminum monostearate and
gelatin.
[0462] Sterile injectable solutions can be prepared by
incorporating the active compound in the required amount in an
appropriate solvent with one or a combination of ingredients
enumerated above, as required, followed by filtered sterilization.
Generally, dispersions are prepared by incorporating the active
compound into a sterile vehicle, which contains a basic dispersion
medium and the required other ingredients from those enumerated
above. In the case of sterile powders for the preparation of
sterile injectable solutions, the preferred methods of preparation
are vacuum drying and freeze-drying which yields a powder of the
active ingredient plus any additional desired ingredient from a
previously sterile-filtered solution thereof.
[0463] Oral compositions generally include an inert diluent or an
edible carrier. For the purpose of oral therapeutic administration,
the active compound can be incorporated with excipients and used in
the form of tablets, troches, or capsules, e.g., gelatin capsules.
Oral compositions can also be prepared using a fluid carrier for
use as a mouthwash. Pharmaceutically compatible binding agents,
and/or adjuvant materials can be included as part of the
composition. The tablets, pills, capsules, troches and the like can
contain any of the following ingredients, or compounds of a similar
nature: a binder such as microcrystalline cellulose, gum tragacanth
or gelatin; an excipient such as starch or lactose, a
disintegrating agent such as alginic acid, Primogel, or corn
starch; a lubricant such as magnesium stearate or Sterotes; a
glidant such as colloidal silicon dioxide; a sweetening agent such
as sucrose or saccharin; or a flavoring agent such as peppermint,
methyl salicylate, or orange flavoring.
[0464] For administration by inhalation, the compounds are
delivered in the form of an aerosol spray from pressured container
or dispenser which contains a suitable propellant, e.g., a gas such
as carbon dioxide, or a nebulizer. Such methods include those
described in U.S. Pat. No. 6,468,798.
[0465] Systemic administration can also be by transmucosal or
transdermal means. For transmucosal or transdermal administration,
penetrants appropriate to the barrier to be permeated are used in
the formulation. Such penetrants are generally known in the art,
and include, for example, for transmucosal administration,
detergents, bile salts, and fusidic acid derivatives. Transmucosal
administration can be accomplished through the use of nasal sprays
or suppositories. For transdermal administration, the active
compounds are formulated into ointments, salves, gels, or creams as
generally known in the art.
[0466] The compounds can also be prepared in the form of
suppositories (e.g., with conventional suppository bases such as
cocoa butter and other glycerides) or retention enemas for rectal
delivery.
[0467] The compounds can also be administered by transfection or
infection using methods known in the art, including but not limited
to the methods described in McCaffrey et al. (2002), Nature,
418(6893), 38-9 (hydrodynamic transfection); Xia et al. (2002),
Nature Biotechnol., 20(10), 1006-10 (viral-mediated delivery); or
Putnam (1996), Am. J. Health Syst. Pharm. 53(2), 151-160, erratum
at Am. J. Health Syst. Pharm. 53(3), 325 (1996).
[0468] The compounds can also be administered by any method
suitable for administration of nucleic acid agents, such as a DNA
vaccine. These methods include gene guns, bio injectors, and skin
patches as well as needle-free methods such as the micro-particle
DNA vaccine technology disclosed in U.S. Pat. No. 6,194,389, and
the mammalian transdermal needle-free vaccination with powder-form
vaccine as disclosed in U.S. Pat. No. 6,168,587. Additionally,
intranasal delivery is possible, as described in, inter alia,
Hamajima et al. (1998), Clin. Immunol. Immunopathol., 88(2),
205-10. Liposomes (e.g., as described in U.S. Pat. No. 6,472,375)
and microencapsulation can also be used. Biodegradable targetable
microparticle delivery systems can also be used (e.g., as described
in U.S. Pat. No. 6,471,996).
[0469] In one embodiment, the active compounds are prepared with
carriers that will protect the compound against rapid elimination
from the body, such as a controlled release formulation, including
implants and microencapsulated delivery systems. Biodegradable,
biocompatible polymers can be used, such as ethylene vinyl acetate,
polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and
polylactic acid. Such formulations can be prepared using standard
techniques. The materials can also be obtained commercially from
Alza Corporation and Nova Pharmaceuticals, Inc. Liposomal
suspensions (including liposomes targeted to infected cells with
monoclonal antibodies to viral antigens) can also be used as
pharmaceutically acceptable carriers. These can be prepared
according to methods known to those skilled in the art, for
example, as described in U.S. Pat. No. 4,522,811.
[0470] Toxicity and therapeutic efficacy of such compounds can be
determined by standard pharmaceutical procedures in cell cultures
or experimental animals, e.g., for determining the LD.sub.50 (the
dose lethal to 50% of the population) and the ED.sub.50 (the dose
therapeutically effective in 50% of the population). The dose ratio
between toxic and therapeutic effects is the therapeutic index and
it can be expressed as the ratio LD.sub.50/ED.sub.50. Compounds
which exhibit high therapeutic indices are preferred. While
compounds that exhibit toxic side effects may be used, care should
be taken to design a delivery system that targets such compounds to
the site of affected tissue in order to minimize potential damage
to uninfected cells and, thereby, reduce side effects.
[0471] The data obtained from the cell culture assays and animal
studies can be used in formulating a range of dosage for use in
humans. The dosage of such compounds lies preferably within a range
of circulating concentrations that include the ED.sub.50 with
little or no toxicity. The dosage may vary within this range
depending upon the dosage form employed and the route of
administration utilized. For any compound used in the method of the
invention, the therapeutically effective dose can be estimated
initially from cell culture assays. A dose may be formulated in
animal models to achieve a circulating plasma concentration range
that includes the IC.sub.50 (i.e., the concentration of the test
compound which achieves a half-maximal inhibition of symptoms) as
determined in cell culture. Such information can be used to more
accurately determine useful doses in humans. Levels in plasma may
be measured, for example, by high performance liquid
chromatography.
[0472] As defined herein, a therapeutically effective amount of a
nucleic acid molecule (i.e., an effective dosage) depends on the
nucleic acid selected. For instance, if a plasmid encoding a DsiRNA
agent is selected, single dose amounts in the range of
approximately 1 pg to 1000 mg may be administered; in some
embodiments, 10, 30, 100, or 1000 pg, or 10, 30, 100, or 1000 ng,
or 10, 30, 100, or 1000 .mu.g, or 10, 30, 100, or 1000 mg may be
administered. In some embodiments, 1-5 g of the compositions can be
administered. The compositions can be administered one from one or
more times per day to one or more times per week; including once
every other day. The skilled artisan will appreciate that certain
factors may influence the dosage and timing required to effectively
treat a subject, including but not limited to the severity of the
disease or disorder, previous treatments, the general health and/or
age of the subject, and other diseases present. Moreover, treatment
of a subject with a therapeutically effective amount of a protein,
polypeptide, or antibody can include a single treatment or,
preferably, can include a series of treatments.
[0473] As therapeutically useful peptide according to the invention
"increases" targeting, as defined hereinabove, of a peptide-dsRNA
conjugate such that less dsRNA (a lower dose of dsRNA) as compared
to the amount or dose of an identical dsRNA that is not conjugated
to a peptide and that is required to achieve an equivalent level of
binding, association or internalization, as determined by the
IC.sub.50s in the assays described hereinbelow is required. For
example, the IC.sub.50 for a dsRNA-peptide conjugate that is
required to achieve a 50% reduction in RNA/gene expression is
decreased as compared to the IC.sub.50 for an identical dsRNA that
is not conjugated to a peptide, as measured in vivo or in vitro
(see for example Hefner et al. J Biomol Tech. 2008 September: 19(4)
231-237; Zimmermann et al. Nature. 2006 May 4: 441(7089):111-114;
Durcan et al. Mol. Pharm. 2008 July-August; 5(4):559-566; Heidel et
al. Proc Natl Acad Sci USA. 2007 Apr. 3: 104(14):5715-5721.).
[0474] A useful dose of dsRNA-peptide as defined herein is on the
order of 0.1 mg/kg-100 mg/kg, for example, 0.2 kg/mg-50 kg/mg, 0.5
kg/mg-30 kg/mg or 0.5 mg/kg-20 mg/kg (including 0.5, 0.6, 0.7, 0.8,
0.9, 1, 1.5, 2, 2.5, 3, 3.5, 4, 4.5, 5, 5.5, 6, 6.5, 7, 7.5, 8,
8.5, 9, 9.5, 10, 10.5, 11, 11.5, 12, 12.5, 13, 13.5, 14, 14.5, 15,
15.5, 16, 16.5, 17, 17.5, 18, 18.5, 19, 19.5, 20 kg/mg or
more).
[0475] The nucleic acid molecules of the invention can be inserted
into expression constructs, e.g., viral vectors, retroviral
vectors, expression cassettes, or plasmid viral vectors, e.g.,
using methods known in the art, including but not limited to those
described in Xia et al., (2002), supra. Expression constructs can
be delivered to a subject by, for example, inhalation, orally,
intravenous injection, local administration (see U.S. Pat. No.
5,328,470) or by stereotactic injection (see e.g., Chen et al.
(1994), Proc. Natl. Acad. Sci. USA, 91, 3054-3057). The
pharmaceutical preparation of the delivery vector can include the
vector in an acceptable diluent, or can comprise a slow release
matrix in which the delivery vehicle is imbedded. Alternatively,
where the complete delivery vector can be produced intact from
recombinant cells, e.g., retroviral vectors, the pharmaceutical
preparation can include one or more cells which produce the gene
delivery system.
[0476] The expression constructs may be any construct suitable for
use in the appropriate expression system and include, but are not
limited to retroviral vectors, linear expression cassettes,
plasmids and viral or virally-derived vectors, as known in the art.
Such expression constructs may include one or more inducible
promoters, RNA Pol III promoter systems such as U6 snRNA promoters
or H1 RNA polymerase III promoters, or other promoters known in the
art. The constructs can include one or both strands of the siRNA.
Expression constructs expressing both strands can also include loop
structures linking both strands, or each strand can be separately
transcribed from separate promoters within the same construct. Each
strand can also be transcribed from a separate expression
construct, e.g., Tuschl (2002, Nature Biotechnol 20: 500-505).
[0477] It can be appreciated that the method of introducing DsiRNA
agents into the environment of the cell will depend on the type of
cell and the make up of its environment. For example, when the
cells are found within a liquid, one preferable formulation is with
a lipid formulation such as in lipofectamine and the DsiRNA agents
can be added directly to the liquid environment of the cells. Lipid
formulations can also be administered to animals such as by
intravenous, intramuscular, or intraperitoneal injection, or orally
or by inhalation or other methods as are known in the art. When the
formulation is suitable for administration into animals such as
mammals and more specifically humans, the formulation is also
pharmaceutically acceptable. Pharmaceutically acceptable
formulations for administering oligonucleotides are known and can
be used. In some instances, it may be preferable to formulate
DsiRNA agents in a buffer or saline solution and directly inject
the formulated DsiRNA agents into cells, as in studies with
oocytes. The direct injection of DsiRNA agents duplexes may also be
done. For suitable methods of introducing dsRNA (e.g., DsiRNA
agents), see U.S. published patent application No. 2004/0203145
A1.
[0478] Suitable amounts of a DsiRNA agent must be introduced and
these amounts can be empirically determined using standard methods.
Typically, effective concentrations of individual DsiRNA agent
species in the environment of a cell will be about 50 nanomolar or
less, 10 nanomolar or less, or compositions in which concentrations
of about 1 nanomolar or less can be used. In another embodiment,
methods utilizing a concentration of about 200 picomolar or less,
100 picomolar or less, 50 picomolar or less, 20 picomolar or less
and even a concentration of about 10 picomolar or less, 5 picomolar
or less, 2 picomolar or less or 1 picomolar or less can be used in
many circumstances.
[0479] The method can be carried out by addition of the DsiRNA
agent compositions to any extracellular matrix in which cells can
live provided that the DsiRNA agent composition is formulated so
that a sufficient amount of the DsiRNA agent can enter the cell to
exert its effect. For example, the method is amenable for use with
cells present in a liquid such as a liquid culture or cell growth
media, in tissue explants, or in whole organisms, including
animals, such as mammals and especially humans.
[0480] The level or activity of an RNA can be determined by any
suitable method now known in the art or that is later developed. It
can be appreciated that the method used to measure a target RNA
and/or the expression of a target RNA can depend upon the nature of
the target RNA. For example, where the target RNA sequence encodes
a protein, the term "expression" can refer to a protein or the
RNA/transcript derived from the gene of interest (either genomic or
of exogenous origin). In such instances the expression of the
target RNA can be determined by measuring the amount of target
RNA/transcript directly or by measuring the amount of the protein
product of the RNA of interest. Protein can be measured in protein
assays such as by staining or immunoblotting or, if the protein
catalyzes a reaction that can be measured, by measuring reaction
rates. All such methods are known in the art and can be used. Where
target RNA levels are to be measured, any art-recognized methods
for detecting RNA levels can be used (e.g., RT-PCR, Northern
Blotting, etc.). In targeting RNAs with the DsiRNA agents of the
instant invention, it is also anticipated that measurement of the
efficacy of a DsiRNA agent in reducing levels of RNA or protein in
a subject, tissue, in cells, either in vitro or in vivo, or in cell
extracts can also be used to determine the extent of reduction of
phenotypes associated with a particular RNA of interest (e.g.,
disease or disorders, e.g., cancer or tumor formation, growth,
metastasis, spread, etc.). Any of the above measurements can be
made on cells, cell extracts, tissues, tissue extracts or any other
suitable source material.
[0481] The determination of whether the expression of a target RNA
has been reduced can be by any suitable method that can reliably
detect changes in RNA levels. Typically, the determination is made
by introducing into the environment of a cell undigested DsiRNA
such that at least a portion of that DsiRNA agent enters the
cytoplasm, and then measuring the level of the target RNA. The same
measurement is made on identical untreated cells and the results
obtained from each measurement are compared.
[0482] The DsiRNA agent can be formulated as a pharmaceutical
composition which comprises a pharmacologically effective amount of
a DsiRNA agent and pharmaceutically acceptable carrier. A
pharmacologically or therapeutically effective amount refers to
that amount of a DsiRNA agent effective to produce the intended
pharmacological, therapeutic or preventive result. The phrases
"pharmacologically effective amount" and "therapeutically effective
amount" or simply "effective amount" refer to that amount of an RNA
effective to produce the intended pharmacological, therapeutic or
preventive result. For example, if a given clinical treatment is
considered effective when there is at least a 20% reduction in a
measurable parameter associated with a disease or disorder, a
therapeutically effective amount of a drug for the treatment of
that disease or disorder is the amount necessary to effect at least
a 20% reduction in that parameter.
[0483] Suitably formulated pharmaceutical compositions of this
invention can be administered by any means known in the art such as
by parenteral routes, including intravenous, intramuscular,
intraperitoneal, subcutaneous, transdermal, airway (aerosol),
rectal, vaginal and topical (including buccal and sublingual)
administration. In some embodiments, the pharmaceutical
compositions are administered by intravenous or intraparenteral
infusion or injection.
[0484] In general, a suitable dosage unit of dsRNA will be in the
range of 0.001 to 0.25 milligrams per kilogram body weight of the
recipient per day, or in the range of 0.01 to 20 micrograms per
kilogram body weight per day, or in the range of 0.01 to 10
micrograms per kilogram body weight per day, or in the range of
0.10 to 5 micrograms per kilogram body weight per day, or in the
range of 0.1 to 2.5 micrograms per kilogram body weight per day.
Pharmaceutical composition comprising the dsRNA can be administered
once daily. However, the therapeutic agent may also be dosed in
dosage units containing two, three, four, five, six or more
sub-doses administered at appropriate intervals throughout the day.
In that case, the dsRNA contained in each sub-dose must be
correspondingly smaller in order to achieve the total daily dosage
unit. The dosage unit can also be compounded for a single dose over
several days, e.g., using a conventional sustained release
formulation which provides sustained and consistent release of the
dsRNA over a several day period. Sustained release formulations are
well known in the art. In this embodiment, the dosage unit contains
a corresponding multiple of the daily dose. Regardless of the
formulation, the pharmaceutical composition must contain dsRNA in a
quantity sufficient to inhibit expression of the target gene in the
animal or human being treated. The composition can be compounded in
such a way that the sum of the multiple units of dsRNA together
contain a sufficient dose.
[0485] Data can be obtained from cell culture assays and animal
studies to formulate a suitable dosage range for humans. The dosage
of compositions of the invention lies within a range of circulating
concentrations that include the ED.sub.50 (as determined by known
methods) with little or no toxicity. The dosage may vary within
this range depending upon the dosage form employed and the route of
administration utilized. For any compound used in the method of the
invention, the therapeutically effective dose can be estimated
initially from cell culture assays. A dose may be formulated in
animal models to achieve a circulating plasma concentration range
of the compound that includes the IC.sub.50 (i.e., the
concentration of the test compound which achieves a half-maximal
inhibition of symptoms) as determined in cell culture. Such
information can be used to more accurately determine useful doses
in humans. Levels of dsRNA in plasma may be measured by standard
methods, for example, by high performance liquid
chromatography.
[0486] The pharmaceutical compositions can be included in a kit,
container, pack, or dispenser together with instructions for
administration.
Methods of Treatment
[0487] The present invention provides for both prophylactic and
therapeutic methods of treating a subject at risk of (or
susceptible to) a disease or disorder caused, in whole or in part,
by the an RNA of interest (e.g., misregulation and/or elevation of
transcript and/or protein levels), or treatable via selective
targeting of an RNA of interest.
[0488] "Treatment", or "treating" as used herein, is defined as the
application or administration of a therapeutic agent (e.g., a
DsiRNA agent or vector or transgene encoding same) to a patient, or
application or administration of a therapeutic agent to an isolated
tissue or cell line from a patient, who has the disease or
disorder, a symptom of disease or disorder or a predisposition
toward a disease or disorder, with the purpose to cure, heal,
alleviate, relieve, alter, remedy, ameliorate, improve or affect
the disease or disorder, the symptoms of the disease or disorder,
or the predisposition toward disease.
[0489] In one aspect, the invention provides a method for
preventing in a subject, a disease or disorder as described above
(including, e.g., prevention of the commencement of transforming
events within a subject via inhibition of expression of an RNA of
interest), by administering to the subject a therapeutic agent
(e.g., a DsiRNA agent or vector or transgene encoding same).
Subjects at risk for the disease can be identified by, for example,
any or a combination of diagnostic or prognostic assays as
described herein. Administration of a prophylactic agent can occur
prior to the detection of, e.g., cancer in a subject, or the
manifestation of symptoms characteristic of the disease or
disorder, such that the disease or disorder is prevented or,
alternatively, delayed in its progression.
[0490] Another aspect of the invention pertains to methods of
treating subjects therapeutically, i.e., altering the onset of
symptoms of the disease or disorder. These methods can be performed
in vitro (e.g., by culturing the cell with the DsiRNA agent) or,
alternatively, in vivo (e.g., by administering the DsiRNA agent to
a subject).
[0491] With regards to both prophylactic and therapeutic methods of
treatment, such treatments may be specifically tailored or
modified, based on knowledge obtained from the field of
pharmacogenomics. "Pharmacogenomics", as used herein, refers to the
application of genomics technologies such as gene sequencing,
statistical genetics, and gene expression analysis to drugs in
clinical development and on the market. More specifically, the term
refers the study of how a patient's genes determine his or her
response to a drug (e.g., a patient's "drug response phenotype", or
"drug response genotype"). Thus, another aspect of the invention
provides methods for tailoring an individual's prophylactic or
therapeutic treatment with either the target RNA molecules of the
present invention or target RNA modulators according to that
individual's drug response genotype. Pharmacogenomics allows a
clinician or physician to target prophylactic or therapeutic
treatments to patients who will most benefit from the treatment and
to avoid treatment of patients who will experience toxic
drug-related side effects.
[0492] Therapeutic agents can be tested in an appropriate animal
model. For example, a DsiRNA agent (or expression vector or
transgene encoding same) as described herein can be used in an
animal model to determine the efficacy, toxicity, or side effects
of treatment with said agent. Alternatively, an agent (e.g., a
therapeutic agent) can be used in an animal model to determine the
mechanism of action of such an agent.
Models Useful to Evaluate the Down-Regulation of mRNA Levels and
Expression
Cell Culture
[0493] The dsRNA-peptide agents of the invention can be tested for
cleavage activity in vivo, for example, using the following
procedure.
[0494] The dsRNA-peptide reagents of the invention can be tested in
cell culture using HeLa or other mammalian cells to determine the
extent of target RNA and target protein inhibition. dsRNA-peptide
reagents (e.g., see FIG. 1 and above-recited structures) are
selected against the target as described herein. Target RNA
inhibition is measured after delivery of these reagents by a
suitable transfection agent to, for example, cultured HeLa cells or
other transformed or non-transformed mammalian cells in culture.
Relative amounts of target RNA are measured versus actin or other
appropriate control using real-time PCR monitoring of amplification
(e.g., ABI 7700 TAQMAN.RTM.). A comparison is made to a mixture of
oligonucleotide sequences made to unrelated targets or to a
randomized DsiRNA control with the same overall length and
chemistry, but randomly substituted at each position, or simply to
appropriate vehicle-treated or untreated controls. Primary and
secondary lead reagents are chosen for the target and optimization
performed. After an optimal transfection agent concentration is
chosen, a RNA time-course of inhibition is performed with the lead
DsiRNA molecule.
[0495] TAQMAN.RTM. (Real-Time PCR Monitoring of Amplification) and
Lightcycler Quantification of mRNA
[0496] Total RNA is prepared from cells following dsRNA delivery,
for example, using Ambion Rnaqueous 4-PCR purification kit for
large scale extractions, or Ambion Rnaqueous-96 purification kit
for 96-well assays. For Taqman analysis, dual-labeled probes are
synthesized with, for example, the reporter dyes FAM or VIC
covalently linked at the 5'-end and the quencher dye TAMARA
conjugated to the 3'-end. One-step RT-PCR amplifications are
performed on, for example, an ABI PRISM 7700 Sequence detector
using 50 uL reactions consisting of 10 uL total RNA, 100 nM forward
primer, 100 mM reverse primer, 100 nM probe, 1.times. TaqMan PCR
reaction buffer (PE-Applied Biosystems), 5.5 mM MgCl2, 100 uM each
dATP, dCTP, dGTP and dTTP, 0.2 U RNase Inhibitor (Promega), 0.025 U
AmpliTaq Gold (PE-Applied Biosystems) and 0.2 U M-MLV Reverse
Transcriptase (Promega). The thermal cycling conditions can consist
of 30 minutes at 48.degree. C., 10 minutes at 95.degree. C.,
followed by 40 cycles of 15 seconds at 95.degree. C. and 1 minute
at 60.degree. C. Quantitation of target KRAS mRNA level is
determined relative to standards generated from serially diluted
total cellular RNA (300, 100, 30, 10 ng/rxn) and normalizing to,
for example, 36B4 mRNA in either parallel or same tube TaqMan
reactions.
[0497] Western Blotting
[0498] Nuclear extracts can be prepared using a standard micro
preparation technique (see for example Andrews and Faller, 1991,
Nucleic Acids Research, 19, 2499). Protein extracts from
supernatants are prepared, for example using TCA precipitation. An
equal volume of 20% TCA is added to the cell supernatant, incubated
on ice for 1 hour and pelleted by centrifugation for 5 minutes.
Pellets are washed in acetone, dried and resuspended in water.
Cellular protein extracts are run on a 10% Bis-Tris NuPage (nuclear
extracts) or 4-12% Tris-Glycine (supernatant extracts)
polyacrylamide gel and transferred onto nitro-cellulose membranes.
Non-specific binding can be blocked by incubation, for example,
with 5% non-fat milk for 1 hour followed by primary antibody for 16
hours at 4.degree. C. Following washes, the secondary antibody is
applied, for example (1:10,000 dilution) for 1 hour at room
temperature and the signal detected with SuperSignal reagent
(Pierce).
[0499] In several cell culture systems, cationic lipids have been
shown to enhance the bioavailability of oligonucleotides to cells
in culture (Bennet, et al., 1992, Mol. Pharmacology, 41,
1023-1033). In one embodiment, DsiRNA molecules of the invention
are complexed with cationic lipids for cell culture experiments.
DsiRNA and cationic lipid mixtures are prepared in serum-free DMEM
immediately prior to addition to the cells. DMEM plus additives are
warmed to room temperature (about 20-25.degree. C.) and cationic
lipid is added to the final desired concentration and the solution
is vortexed briefly. DsiRNA molecules are added to the final
desired concentration and the solution is again vortexed briefly
and incubated for 10 minutes at room temperature. In dose response
experiments, the RNA/lipid complex is serially diluted into DMEM
following the 10 minute incubation.
Animal Models
[0500] Evaluating the efficacy of dsRNA-peptide agents in animal
models is an important prerequisite to human clinical trials.
Various animal models of cancer and/or proliferative diseases,
conditions, or disorders as are known in the art can be adapted for
use for pre-clinical evaluation of the efficacy of DsiRNA
compositions of the invention in modulating target gene expression
toward therapeutic use.
[0501] For example, if the target is KRAS, as in cell culture
models, the most Ras sensitive mouse tumor xenografts are those
derived from cancer cells that express mutant Ras proteins. Nude
mice bearing H-Ras transformed bladder cancer cell xenografts were
sensitive to an anti-Ras antisense nucleic acid, resulting in an
80% inhibition of tumor growth after a 31 day treatment period
(Wickstrom, 2001, Mol. Biotechnol., 18, 35-35). Zhang et al., 2000,
Gene Ther., 7, 2041, describes an anti-KRAS ribozyme adenoviral
vector (KRbz-ADV) targeting a KRAS mutant (KRAS codon 12 GGT to
GTT; H441 and H1725 cells respectively). Non-small cell lung cancer
cells (NSCLC H441 and H1725 cells) that express the mutant KRas
protein were used in nude mouse xenografts compared to NSCLC H1650
cells that lack the relevant mutation. Pre-treatment with KRbz-ADV
completely abrogated engraftment of both H441 and H1725 cells and
compared to 100% engraftment and tumor growth in animals that
received untreated tumor cells or a control vector. Additional
mouse models of KRAS misregulation/mutation have also been
described (e.g., in Kim et al. Cell 121: 823-835, which identified
a role of KRAS in promoting lung adenocarcinomas). The above
studies provide proof that inhibition of Ras expression (e.g., KRAS
expression) by anti-Ras agents causes inhibition of tumor growth in
animals.
[0502] As such, these models can be used in evaluating the efficacy
of DsiRNA molecules of the invention in inhibiting KRAS levels,
expression, tumor/cancer formation, growth, spread, development of
other KRAS-associated phenotypes, diseases or disorders, etc. These
models and others can similarly be used to evaluate the
safety/toxicity and efficacy of DsiRNA molecules of the invention
in a pre-clinical setting.
[0503] The practice of the present invention employs, unless
otherwise indicated, conventional techniques of chemistry,
molecular biology, microbiology, recombinant DNA, genetics,
immunology, cell biology, cell culture and transgenic biology,
which are within the skill of the art. See, e.g., Maniatis et al.,
1982, Molecular Cloning (Cold Spring Harbor Laboratory Press, Cold
Spring Harbor, N.Y.); Sambrook et al., 1989, Molecular Cloning, 2nd
Ed. (Cold Spring Harbor Laboratory Press, Cold Spring Harbor,
N.Y.); Sambrook and Russell, 2001, Molecular Cloning, 3rd Ed. (Cold
Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.); Ausubel
et al., 1992), Current Protocols in Molecular Biology (John Wiley
& Sons, including periodic updates); Glover, 1985, DNA Cloning
(IRL Press, Oxford); Anand, 1992; Guthrie and Fink, 1991; Harlow
and Lane, 1988, Antibodies, (Cold Spring Harbor Laboratory Press,
Cold Spring Harbor, N.Y.); Jakoby and Pastan, 1979; Nucleic Acid
Hybridization (B. D. Hames & S. J. Higgins eds. 1984);
Transcription And Translation (B. D. Hames & S. J. Higgins eds.
1984); Culture Of Animal Cells (R. I. Freshney, Alan R. Liss, Inc.,
1987); Immobilized Cells And Enzymes (IRL Press, 1986); B. Perbal,
A Practical Guide To Molecular Cloning (1984); the treatise,
Methods In Enzymology (Academic Press, Inc., N.Y.); Gene Transfer
Vectors For Mammalian Cells (J. H. Miller and M. P. Calos eds.,
1987, Cold Spring Harbor Laboratory); Methods In Enzymology, Vols.
154 and 155 (Wu et al. eds.), Immunochemical Methods In Cell And
Molecular Biology (Mayer and Walker, eds., Academic Press, London,
1987); Handbook Of Experimental Immunology, Volumes I-IV (D. M.
Weir and C. C. Blackwell, eds., 1986); Riott, Essential Immunology,
6th Edition, Blackwell Scientific Publications, Oxford, 1988; Hogan
et al., Manipulating the Mouse Embryo, (Cold Spring Harbor
Laboratory Press, Cold Spring Harbor, N.Y., 1986); Westerfield, M.,
The zebrafish book. A guide for the laboratory use of zebrafish
(Danio rerio), (4th Ed., Univ. of Oregon Press, Eugene, 2000).
[0504] Unless otherwise defined, all technical and scientific terms
used herein have the same meaning as commonly understood by one of
ordinary skill in the art to which this invention belongs. Although
methods and materials similar or equivalent to those described
herein can be used in the practice or testing of the present
invention, suitable methods and materials are described below. All
publications, patent applications, patents, and other references
mentioned herein are incorporated by reference in their entirety.
In case of conflict, the present specification, including
definitions, will control. In addition, the materials, methods, and
examples are illustrative only and not intended to be limiting.
EXAMPLES
[0505] The present invention is described by reference to the
following Examples, which are offered by way of illustration and
are not intended to limit the invention in any manner. Standard
techniques well known in the art or the techniques specifically
described below were utilized.
Example 1
Preparation of Double-Stranded RNA Oligonucleotides
[0506] Oligonucleotide Synthesis and Purification
[0507] DsiRNA molecules can be designed to interact with various
sites in the RNA message, for example, target sequences within the
RNA sequences described herein. The DsiRNA molecules are chemically
synthesized using methods described herein. Generally, DsiRNA
constructs are synthesized using solid phase oligonucleotide
synthesis methods as described for 19-23mer siRNAs (see for example
Usman et al., U.S. Pat. Nos. 5,804,683; 5,831,071; 5,998,203;
6,117,657; 6,353,098; 6,362,323; 6,437,117; 6,469,158; Scaringe et
al., U.S. Pat. Nos. 6,111,086; 6,008,400; 6,111,086).
[0508] Individual RNA strands are synthesized and HPLC purified
according to standard methods (Integrated DNA Technologies,
Coralville, Iowa). For example, RNA oligonucleotides are
synthesized using solid phase phosphoramidite chemistry,
deprotected and desalted on NAP-5 columns (Amersham Pharmacia
Biotech, Piscataway, N.J.) using standard techniques (Damha and
Olgivie, 1993, Methods Mol Biol 20: 81-114; Wincott et al., 1995,
Nucleic Acids Res 23: 2677-84). The oligomers are purified using
ion-exchange high performance liquid chromatography (IE-HPLC) on an
Amersham Source 15Q column (1.0 cm.times.25 cm; Amersham Pharmacia
Biotech, Piscataway, N.J.) using a 15 min step-linear gradient. The
gradient varies from 90:10 Buffers A:B to 52:48 Buffers A:B, where
Buffer A is 100 mM Tris pH 8.5 and Buffer B is 100 mM Tris pH 8.5,
1 M NaCl. Samples are monitored at 260 nm and peaks corresponding
to the full-length oligonucleotide species are collected, pooled,
desalted on NAP-5 columns, and lyophilized.
[0509] The purity of each oligomer was determined by capillary
electrophoresis (CE) on a Beckman PACE 5000 (Beckman Coulter, Inc.,
Fullerton, Calif.). The CE capillaries had a 100 .mu.m inner
diameter and contains ssDNA 100R Gel (Beckman-Coulter). Typically,
about 0.6 nmole of oligonucleotide was injected into a capillary,
run in an electric field of 444 V/cm and detected by UV absorbance
at 260 nm. Denaturing Tris-Borate-7 M-urea running buffer was
purchased from Beckman-Coulter. Oligoribonucleotides were obtained
that are at least 90% pure as assessed by CE for use in experiments
described below. Compound identity was verified by matrix-assisted
laser desorption ionization time-of-flight (MALDI-TOF) mass
spectroscopy on a Voyager DE.TM. Biospectometry Work Station
(Applied Biosystems, Foster City, Calif.) following the
manufacturer's recommended protocol. Relative molecular masses of
all oligomers were obtained, often within 0.2% of expected
molecular mass.
[0510] Preparation of Duplexes
[0511] Single-stranded RNA (ssRNA) oligomers were resuspended,
e.g., at 100 .mu.M concentration in duplex buffer consisting of 100
mM potassium acetate, 30 mM HEPES, pH 7.5. Complementary sense and
antisense strands were mixed in equal molar amounts to yield a
final solution of, e.g., 50 .mu.M duplex. Samples were heated to
100.degree. C. for 5' in RNA buffer (IDT) and allowed to cool to
room temperature before use. Double-stranded RNA (dsRNA) oligomers
were stored at -20.degree. C. Single-stranded RNA oligomers were
stored lyophilized or in nuclease-free water at -80.degree. C.
[0512] Nomenclature
[0513] For consistency, the following nomenclature has been
employed in the instant specification. Names given to duplexes
indicate the length of the oligomers and the presence or absence of
overhangs. A "25/27" is an asymmetric duplex having a 25 base sense
strand and a 27 base antisense strand with a 2-base 3'-overhang. A
"27/25" is an asymmetric duplex having a 27 base sense strand and a
25 base antisense strand.
[0514] Cell Culture and RNA Transfection
[0515] HeLa cells were obtained from ATCC and maintained in
Dulbecco's modified Eagle medium (HyClone) supplemented with 10%
fetal bovine serum (HyClone) at 37.degree. C. under 5% CO.sub.2.
For RNA transfections, HeLa cells were transfected with DsiRNAs as
indicated at a final concentration of 1 nM or 0.1 nM using
Lipofectamine.TM. RNAiMAX (Invitrogen) and following manufacturer's
instructions. Briefly, 2.54, of a 0.2 .mu.M or 0.02 .mu.M stock
solution of each DsiRNA were mixed with 46.54, of Opti-MEM I
(Invitrogen) and 1 .mu.L of Lipofectamine.TM. RNAiMAX. The
resulting 50 .mu.L mix was added into individual wells of 12 well
plates and incubated for 20 min at RT to allow
DsiRNA:Lipofectamine.TM. RNAiMAX complexes to form. Meanwhile, HeLa
cells were trypsinized and resuspended in medium at a final
concentration of 367 cells/.mu.L. Finally, 450 .mu.L of the cell
suspension were added to each well (final volume 500 .mu.L) and
plates were placed into the incubator for 24 hours.
[0516] Assessment of Inhibition
[0517] Target gene knockdown was determined by qRT-PCR, with values
normalized to HPRT expression control treatments, including
Lipofectamine.TM. RNAiMAX alone (Vehicle control) or untreated.
[0518] RNA Isolation and Analysis
[0519] Cells were washed once with 2 mL of PBS, and total RNA was
extracted using RNeasy Mini Kit.TM. (Qiagen) and eluted in a final
volume of 30 .mu.L. 1 .mu.g of total RNA was reverse-transcribed
using Transcriptor 1.sup.st Strand cDNA Kit.TM. (Roche) and random
hexamers following manufacturer's instructions. One-thirtieth (0.66
.mu.L) of the resulting cDNA was mixed with 54, of IQ Multiplex
Powermix (Bio-Rad) together with 3.33 .mu.L of H.sub.2O and 1 .mu.L
of a 304 mix containing primers and probes specific for human genes
HPRT-1 (accession number NM.sub.--000194) and KRAS target
sequences.
[0520] Quantitative RT-PCR
[0521] A CFX96 Real-time System with a C1000 Thermal cycler
(Bio-Rad) was used for the amplification reactions. PCR conditions
were: 95.degree. C. for 3 min; and then cycling at 95.degree. C.,
10 sec; 55.degree. C., 1 min for 40 cycles. Each sample was tested
in triplicate. Relative HPRT mRNA levels were normalized to target
mRNA levels and compared with mRNA levels obtained in control
samples treated with the transfection reagent alone, or untreated.
Data was analyzed using Bio-Rad CFX Manager version 1.0
software.
Example 2
Preparation and Use of DsiRNA-Peptide Conjugates
[0522] Oligonucleotide-peptide conjugates of the present invention
were synthesized with chemistry based on the conjugation of HyNic
(6-Hydrazinonicotinamide)-modified peptides to 4FB
(4-Formylbenzamide)-modified oligonucleotides. Other peptide
synthesis methods and conjugation procedures known in the art are
also applicable.
[0523] HyNic moieties were incorporated on a peptide at either N-
or C-termini using 6-Boc-HyNic or
FMOC-Lys-(.epsilon.-6-BocHyNic)OH, respectively. Cleavage from
resin was accomplished using TFA/acetone/water/triisopropylsilane
(TIS) (92.5/2.5/2.5/2.5) for 2 hours. The presence of the acetone
forms a hydrazone with the deprotected hydrazine moiety in situ
blocking any trifluoroacetamide formation from the reaction of TFA
with the strongly nucleophilic hydrazine. Crude peptides were
analyzed by HPLC and ES-MS. Products were isolated by RP-HPLC using
a gradient method. For Peg12 peptides, polyethylene glycol synthons
were directly added during solid phase peptide synthesis. In some
instances, additional polyethylene glycol spacers were also added
to the oligonucleotide termini using polyethylene glycol
oligonucleotide synthons.
[0524] Amino-modified oligonucleotides were converted to
5'-4FB-oligonucleotides. Linking of HyNic-peptides to 4FB-modified
oligonucleotides was performed at a 2-5 mole excess of
HyNic-peptide and generally produced >80% conjugate yield.
Hydrazone bond formation was catalyzed and reaction kinetics
improved 10-100-fold via inclusion of aniline, generally leading to
conjugation yields >95%. Optimal conjugation kinetics (formation
of the hydrazone bond) was achieved between pH 4.5-5.0. However,
the reaction also can proceed at higher pH, albeit at a slower
rate. The optimum pH for each conjugation was determined
empirically, also taking into account the solubility of the
different peptide sequences. The degree of conjugation can be
monitored spectrophotometrically. Formation of the bis-aryl
hydrazone bond was utilized both to trace and to quantify progress
of the conjugation reaction, using the known molar extinction
coefficient (29,000 @ 354 nm). Diafiltration was used to remove
excess peptide, yielding the oligonucleotide-peptide conjugates. To
produce HyNic-quenched peptides, HyNic-peptides were reacted with
2-Sulfobenzaldehyde to inactivate the HyNic reactive moiety on the
peptide.
[0525] Cell-Free Dicing Assay
[0526] DsiRNA or peptide-conjugated DsiRNA (final concentration at
5 .mu.M) was incubated with recombinant human dicer enzyme mixture
(Genlantis, #T52002) at 37.degree. C. for 2 hrs, and the reaction
was stopped with stop solution. This final solution was mixed with
gel loading buffer (Bio-Rad, #161-0767). Dicer-cleaved dsRNAs and
intact DsiRNAs were resolved by 18% native polyacrylamide gel
electrophoresis. Gel images were obtained using the Bio-Rad
VersaDoc.TM. imaging system (model #4000 MP).
[0527] Serum Stability Assay
[0528] DsiRNA or peptide-conjugated DsiRNA (2 .mu.M final
concentration) was incubated in 90% (v/v) mouse serum (Sigma
#M5905) at 37.degree. C. At different time points (0, 2, 4, 8, 1,
10 & 25 hours), 10 .mu.L sample was mixed with 2 .mu.L H.sub.2O
and 3 .mu.L gel loading buffer (Bio-Rad #161-0767) and was
immediately flash frozen in an alcohol-dry ice bath. Samples were
electrophoresed on an 18% native polyacrylamide gel (Bio-Rad
#161-1216). Resolved siRNA bands were quantified using the Bio-Rad
VersaDoc.TM. imaging system (Bio-Rad model #4000 MP). The half-life
of individual dsRNAs in 90% serum was calculated by plotting the
change in dsRNA band intensity over time.
[0529] HPRT1- and KRAS-Targeting DsiRNAs
[0530] Exemplary DsiRNAs directed against HPRT1 and KRAS target
genes were synthesized as described herein, with DsiRNAs possessing
the oligonucleotide sequences, 2'-O-methyl and end modifications
shown in FIG. 2.
[0531] Conjugated Peptides
[0532] Exemplary peptides used or capable of use in conjugation
with the DsiRNAs of the instant invention are listed in FIG. 3,
which also indicates the net charge associated with each individual
peptide.
[0533] The successful synthesis of various peptide-DsiRNA
conjugates was confirmed via observation of the increased size
(and, therefore, retarded electrophoretic mobility) associated with
a successful conjugation. As shown in FIGS. 4-6, both HPRT1- and
KRAS-targeting DsiRNAs were successfully conjugated with a number
of peptides, forming the following conjugates: K1379-SEQ ID NO:32;
K1379-SEQ ID NO:62; K1459-SEQ ID NO:32 (FIG. 4); K1459-SEQ ID
NO:118; K1459-Peg12-SEQ ID NO:118; K1379-SEQ ID NO:118;
K1379-Peg12-SEQ ID NO:118 (FIG. 5); H1460-SEQ ID NO:118; and
H1460-Peg12-SEQ ID NO:118 (FIG. 6).
[0534] DsiRNA-peptide conjugates possessing cleavable linker
moieties (e.g., disulfide groups) were also successfully
synthesized. Specifically, FIG. 7 shows that both stable and
cleavable conjugates of SEQ ID NOs: 118 and 120 peptides with
KRAS-targeting DsiRNA K1379 were produced.
[0535] DsiRNAs were also conjugated with cyclic peptides. As shown
in FIG. 8, the KRAS-targeting DsiRNA, K1459, was successfully
conjugated with cyclic peptide SEQ ID NO:151.
[0536] To assess Dicer cleavage of certain peptide-DsiRNA
conjugates, cell-free dicing assays were performed as described
above upon conjugates K1096-SEQ ID NO:39 and K1096-SEQ ID NO:120.
As shown in FIGS. 9 and 10, Dicer cleavage of both conjugates was
observed.
Example 3
Transfected dsRNA-Peptide Conjugates (e.g., dsRNA-Delivery Peptide
Conjugates) Reduced Expression of Target Gene Levels in a Cell
[0537] Cell Culture and RNA Transfection
[0538] HeLa and HepG2 cells were obtained from ATCC and maintained
in Dulbecco's modified Eagle medium (HyClone) supplemented with 10%
fetal bovine serum (HyClone) at 37.degree. C. under 5% CO.sub.2.
For dsRNA and dsRNA-delivery peptide conjugate transfections, HeLa
cells were transfected with the unconjugated or conjugated DsiRNAs
at indicated final concentrations (e.g., 1 nM or 0.1 nM) in the
presence of Lipofectamine.TM. RNAiMAX (Invitrogen). In certain
examples, unconjugated DsiRNAs were also used as positive controls.
In certain examples, 2.54, of a 0.2 .mu.M or 0.02 .mu.M stock
solution of each DsiRNA was mixed with 47.54, of Opti-MEM I
(Invitrogen). For Lipofectamine.TM. controls, 2.54, of a 0.2 .mu.M
or 0.02 .mu.M stock solution of each DsiRNA was mixed with 46.54,
of Opti-MEM I (Invitrogen) and 1 .mu.L of Lipofectamine.TM.
RNAiMAX. The resulting 50 .mu.L mix was added into individual wells
of 12 well plates and incubated for 20 minutes at room temperature
to allow DsiRNA:Lipofectamine.TM. RNAiMAX complexes to form.
Meanwhile, HeLa or HepG2 cells were trypsinized and resuspended in
medium at a final concentration of about 367 cells/.mu.L. Finally,
450 .mu.L of the cell suspension was added to each well (final
volume 500 .mu.L) and plates were placed into the incubator for 24
hours. For dose-response studies, the concentrations of transfected
DsiRNAs were varied from initially 1 pM to 1 nM. For dose-response
studies involving DsiRNA-peptide conjugates administered to cells
in the absence of transfection vehicle, the concentrations of
administered DsiRNAs and DsiRNA-peptide conjugates were varied from
approximately 5 nM to approximately 5 .mu.M. Time course studies
can also be performed, with incubation times of about 4 hours to
about 72 hours studied.
[0539] Assessment of Inhibition
[0540] Target gene knockdown was determined by qRT-PCR, with values
normalized to HPRT expression control treatments, including
Lipofectamine.TM. RNAiMAX alone (Vehicle control) or untreated.
[0541] RNA Isolation and Analysis
[0542] Cells were washed once with 2 mL of PBS, and total RNA was
extracted using RNeasy Mini Kit.TM. (Qiagen) and eluted in a final
volume of 30 .mu.L. 1 .mu.g of total RNA was reverse-transcribed
using Transcriptor 1.sup.st Strand cDNA Kit.TM. (Roche) and random
hexamers following manufacturer's instructions. One-thirtieth (0.66
.mu.L) of the resulting cDNA was mixed with 54, of IQ Multiplex
Powermix (Bio-Rad) together with 3.334, of H.sub.2O and 14, of a
304 mix containing primers and probes specific for human genes
HPRT-1 (accession number NM.sub.--000194) and KRAS target
sequences.
[0543] Quantitative RT-PCR
[0544] A CFX96 Real-time System with a C1000 Thermal cycler
(Bio-Rad) was used for the amplification reactions. PCR conditions
were: 95.degree. C. for 3 min; and then cycling at 95.degree. C.,
10 sec; 55.degree. C., 1 min for 40 cycles. Each sample was tested
in duplicate (with duplicate experiments performed for each agent
for which data is shown in FIGS. 2-19). Relative HPRT mRNA levels
were normalized to target mRNA levels and compared with mRNA levels
obtained in control samples treated with the transfection reagent
alone, or untreated. Data were analyzed using Bio-Rad CFX Manager
version 1.0 software. Expression data were presented as a
comparison of the expression under the treatment of unconjugated
dsRNA versus that of dsRNA-delivery peptide conjugates.
[0545] DsiRNA-peptide conjugates were initially examined for the
ability to inhibit target mRNA levels in a cell when administered
via transfection. As shown in FIGS. 11 and 12, three different
peptide conjugates of KRAS-targeting DsiRNA K1096 conjugates
(K1096-SEQ ID NO:39; K1096-Peg12-SEQ ID NO:32; and K1096-SEQ ID
NO:120) were all observed to inhibit target mRNA levels by at least
80% when administered to HeLa cells via transfection at 0.1 nM and
higher concentrations. The levels of target gene inhibition seen
for peptide-DsiRNA conjugates were also observed to be similar to
those seen for the free K1096 DsiRNA. Accordingly, peptide-DsiRNA
conjugates were observed to be effective inhibitors of target RNA
levels when administered to HeLa cells via transfection.
Example 4
DsiRNA-Peptide Conjugates Demonstrated Stability in Serum
[0546] Serum stability of DsiRNA agents was assessed as described
herein. As shown in FIGS. 13 and 14, conjugation of DsiRNA K1096
with either the SEQ ID NO:39 or 120 peptide resulted in
significantly extended half-lives for conjugated agents K1096-SEQ
ID NO:39 (half life=12.1 hours) and K1096-SEQ ID NO:120 (half
life=13.3 hours), as compared to DsiRNAs possessing otherwise
identical modification patterns but lacking the SEQ ID NO:39 or 120
peptides.
Example 5
dsRNA-Peptide Conjugates (e.g., dsRNA-Delivery Peptide Conjugates)
Administered without Transfection Vehicle Reduced Expression of
Target Gene Levels in a Cell
[0547] To assess the ability of exemplified DsiRNA-peptide
conjugates to promote delivery of such conjugated agents to target
cells in the absence of any transfection vehicle, a series of
DsiRNA-peptide conjugates were administered to HeLa cells at
concentrations ranging from 20 nM to 2 .mu.M. As shown in FIGS.
15-17, elevated concentrations of DsiRNA-peptide conjugates were
required to achieve significant inhibition of target mRNA levels,
as compared to transfected DsiRNAs. However, all six tested
conjugates (K1096-Peg12-SEQ ID NO:32 and K1096-Peg12-SEQ ID NO:62
of FIG. 15; K1096-Peg12-SEQ ID NO:118 and K1096-SEQ ID NO:120 of
FIG. 16; and K1336-SEQ ID NO:32 and K1336-SEQ ID NO:62 of FIG. 17)
behaved in a dose-responsive manner, with significant levels of
target gene inhibition observed for all conjugated molecules at 2
.mu.M concentration. Indeed, the K1096-SEQ ID NO:120 conjugate of
FIG. 16 exhibited surprising and significant reduction of target
mRNA levels at all tested concentrations (20 nM, 200 nM and 2
.mu.M).
[0548] DsiRNA-peptide conjugates K1379-SEQ ID NO:118 and K1379-SEQ
ID NO:120 were then assessed for the ability to inhibit the KRAS
target gene when administered to HepG2 cells at a concentration of
5 .mu.M in the absence of transfection vehicle. As shown in FIG.
18, remarkably, greater than 90% reduction in target mRNA levels
were observed for both conjugates administered to HepG2 cells at a
concentration of 5 .mu.M in the absence of transfection vehicle.
Such results were similar to results observed for the K1379 DsiRNA
alone administered at 1 nM to HepG2 cells. Surprisingly, inclusion
of a quenched peptide (either quenched SEQ ID NO:118 or quenched
SEQ ID NO:120) with free DsiRNA K1379 in a mixture that was
administered to HepG2 cells resulted in a complete loss of any
target mRNA inhibition activity.
[0549] To examine whether exemplary DsiRNA-peptide conjugates were
more efficient inhibitors of target mRNA levels in the absence of
delivery vehicle than corresponding free DsiRNAs, dose-response
curves were obtained that compared free K1379 DsiRNA with K1379-SEQ
ID NO:118 conjugate and also compared free K1379 DsiRNA with the
K1379-SEQ ID NO:120 conjugate. As shown in FIG. 19, K1379-peptide
conjugates performed significantly better than corresponding free
K1379 DsiRNAs across all IC.sub.50-informative concentrations.
Indeed, measured IC.sub.50 values for DsiRNA-peptide conjugates in
the absence of transfection vehicle were two- to three-fold higher
(and therefore less potent) for free DsiRNA as compared to
corresponding DsiRNA-peptide conjugates.
Example 6
Preparation of Additional Delivery Peptide-dsRNA and/or Targeting
Peptide-dsRNA Conjugates
[0550] Additional preferred target DsiRNA agents are selected from
a pre-screened population of DsiRNAs. Design of DsiRNAs can
optionally involve use of predictive scoring algorithms that
perform in silico assessments of the projected activity/efficacy of
a number of possible DsiRNAs spanning a region of sequence.
[0551] A dsRNA of the invention is conjugated to a delivery peptide
or a targeting peptide by any of the methods described herein
above. About 20 mg of DsiRNAs (.about.1 .mu.moles) with 5' amino
group are reacted with 3-5 molar excess of peptides with terminal
Cys sulfhydryl group using maleimide chemistry (Moschos et al.,
Bioconjug Chem. 2007; 18(5):1450-9; Nishina et al., Mol. Ther.
2008; 16(4):734-40). The peptide-RNA conjugates are purified by
diafiltration to remove excess peptide, desalted and supplied as
lyophilized powder. The purity of the final products is determined
by analytical anion-exchange HPLC and electrospray mass
spectroscopy with deconvolution.
Example 7
Additional Use of a dsRNA-Targeting Peptide Conjugate to Reduce
Expression of a Target Gene in a Cell
[0552] Cell Culture and RNA Transfection
[0553] HeLa, Hep3B, HepG2, HT29, LS174T, and Neuro2a are obtained
from ATCC and maintained in the recommended basal medium with 10%
heat-inactivated FBS at 37.degree. C. under 5% CO.sub.2. For dsRNA
and dsRNA-targeting peptide conjugate transfections, cells are
transfected with the unconjugated or conjugated DsiRNAs as
indicated at a final concentration of 1 nM or 0.1 nM.
Lipofectamine.TM. RNAiMAX (Invitrogen). DsiRNAs are used as
positive controls. Briefly, 2.5 .mu.L, of a 0.2 .mu.M or 0.02 .mu.M
stock solution of each DsiRNAs is mixed with 47.54, of Opti-MEM I
(Invitrogen). For Lipofectamine.TM. control, 2.5 .mu.L, of a 0.2
.mu.M or 0.02 .mu.M stock solution of each DsiRNAs is mixed with
46.54, of Opti-MEM I (Invitrogen) and 1 .mu.L of Lipofectamine.TM.
RNAiMAX. The resulting 50 .mu.L mix is added into individual wells
of 12 well plates and incubated for 20 min at RT to allow
DsiRNA:Lipofectamine.TM. RNAiMAX complexes to form. Meanwhile,
cells are trypsinized and resuspended in medium at a final
concentration of about 367 cells/.mu.L. Finally, 450 .mu.L of the
cell suspension are added to each well (final volume 500 .mu.L) and
plates are placed into the incubator for 24 hours. For dose
response study, the concentrations of DsiRNAs are varied from
initially 1 pM to 1 nM. For time course studies, incubation times
of about 4 hours to about 72 hours are studied.
[0554] Assessment of Inhibition
[0555] Target gene knockdown is determined by qRT-PCR, with values
normalized to HPRT expression control treatments, including
Lipofectamine.TM. RNAiMAX alone (Vehicle control) or untreated.
[0556] RNA Isolation and Analysis
[0557] Cells are washed once with 2 mL of PBS, and total RNA is
extracted using RNeasy Mini Kit.TM. (Qiagen) and eluted in a final
volume of 30 .mu.L. 1 .mu.g of total RNA is reverse-transcribed
using Transcriptor 1.sup.st Strand cDNA Kit.TM. (Roche) and random
hexamers following manufacturer's instructions. One-thirtieth (0.66
.mu.L) of the resulting cDNA is mixed with 54, of IQ Multiplex
Powermix (Bio-Rad) together with 3.334, of H.sub.2) and 14, of a
304 mix containing primers and probes specific for human genes
HPRT-1 (accession number NM.sub.--000194) and KRAS target
sequences.
[0558] Quantitative RT-PCR
[0559] A CFX96 Real-time System with a C1000 Thermal cycler
(Bio-Rad) is used for the amplification reactions. PCR conditions
are: 95.degree. C. for 3 min; and then cycling at 95.degree. C., 10
sec; 55.degree. C., 1 min for 40 cycles. Each sample is tested in
triplicate. Relative HPRT mRNA levels are normalized to target mRNA
levels and compared with mRNA levels obtained in control samples
treated with the transfection reagent alone, or untreated. Data are
analyzed using Bio-Rad CFX Manager version 1.0 software. Expression
data are presented as a comparison of the expression under the
treatment of unconjugated dsRNA versus that of dsRNA-targeting
peptide conjugates.
Example 8
Use of a dsRNA-Delivery Peptide Conjugate to Reduce Expression of a
Target Gene in an Animal
[0560] In order to assess the efficiency of delivery and subsequent
functionality of the dsRNAs, peptides and dsRNA-delivery peptide
conjugates, subcutaneous (s.c.) tumor models (Judge et al., J Clin
Invest. 2009; 119(3):661-73) are utilized. Hep3B tumors are
established in female SCID/beige mice by s.c. injection of
3.times.10.sup.6 cells in 50 .mu.L PBS into the left-hind flank.
Mice are randomized into treatment groups 10-17 days after seeding
as tumors became palpable. Formulations of dsRNA, peptide and
dsRNA-delivery peptide conjugates or PBS vehicle controls are
administered by standard intravenous (i.v.) injection via the
lateral tail vein, calculated based on a mg dsRNAs/kg body weight
basis according to individual animal weights. Tumors are measured
in 2 dimensions (width.times.length) to assess tumor growth using
digital calipers. Tumor volume is calculated using the equation
x*y*y/2, where x=largest diameter and y=smallest diameter, and is
expressed as group mean.+-.SD. Tumor tissues are also removed from
the animals of different treatment groups and gene knockdown is
confirmed. Tumor volume, survival and RNA expression data are
presented as a comparison between the treatments of unconjugated
dsRNA versus dsRNA-delivery peptide conjugates.
Example 9
Use of a dsRNA-Targeting Peptide Conjugate to Reduce Expression of
a Target Gene in a Cell
[0561] In order to assess the efficiency of targeting and
subsequent functionality of the dsRNAs, peptide and dsRNA-targeting
peptide conjugates, intrahepatic tumor models (Judge et al., J Clin
Invest. 2009; 119(3):661-73) are used. Liver tumors are established
in mice by direct intrahepatic injection of Hep3B or Neuro2a tumor
cells. Female SCID/beige mice and male A/J mice are used as hosts
for the Hep3B and Neuro2a tumors, respectively. Maintaining the
mice under gas anesthesia, a single 1.5-cm incision across the
midline is made below the sternum, and the left lateral hepatic
lobe is exteriorized. 1.times.10.sup.6 Hep3B cells or
1.times.10.sup.5 Neuro2a cells suspended in 25 .mu.L PBS are
injected slowly into the lobe at a shallow angle using a Hamilton
syringe and a 30-gauge needle. A swab is then applied to the
puncture wound to stop any bleeding prior to suturing. Mice are
allowed to recover from anesthesia in a sterile cage and monitored
closely for 2-4 hours before being returned to conventional
housing. Eight to eleven days after tumor implantation, mice are
randomized into treatment groups: dsRNA, peptide and dsRNA-peptide
conjugate formulations or PBS vehicle controls are administered by
standard intravenous (i.v.) injection via the lateral tail vein,
calculated based on a mg dsRNAs/kg body weight basis according to
individual animal weights. Body weights are monitored throughout
the duration of the study as an indicator of developing tumor
burden and treatment tolerability. For efficacy studies, defined
humane end points are determined as a surrogate for survival.
Assessments are made based on a combination of clinical signs,
weight loss, and abdominal distension to define the day of
euthanization due to tumor burden. Tumor tissues are removed from
the animals of different treatment groups and gene knockdown is
confirmed.
[0562] Functionality of peptide, dsRNA and dsRNA-peptide conjugates
for tumor cell targeting are also tested by labeling the peptide
and/or dsRNA with fluorescent tags and performing fluorescent
biodistribution studies using a live-animal imaging system (Xenogen
or BioRad) (Eguchi et al., Nat. Biotechnol. 2009 May 17. [Epub
ahead of print]). Using this methodology, and by comparing with the
free (i.e., unconjugated) dsRNAs the ability of the peptide to bind
to the tumor cell for both the peptide alone and dsRNA-peptide
conjugates is confirmed. Unconjugated dsRNAs, used as a control in
this study, by contrast, are unable to bind to the same extent as
conjugated dsRNAs to the tumor surface. Efficacy end points, RNA
expression and biodistribution data are presented as a comparison
between the treatments with unconjugated dsRNA versus
dsRNA-targeting peptide conjugates.
Example 10
Use of Additional Cell Culture Models to Evaluate the
Down-Regulation of KRAS Gene Expression
[0563] A variety of endpoints have been used in cell culture models
to look at Ras-mediated effects after treatment with anti-Ras
agents. Phenotypic endpoints include inhibition of cell
proliferation, RNA expression, and reduction of Ras protein
expression. Because KRAS oncogene mutations are directly associated
with increased proliferation of certain tumor cells, a
proliferation endpoint for cell culture assays is preferably used
as the primary screen. There are several methods by which this
endpoint can be measured. Following treatment of cells with
DsiRNA-peptide conjugates of the invention, cells are allowed to
grow (typically 5 days), after which the cell viability, the
incorporation of [.sup.3H] thymidine into cellular DNA and/or the
cell density are measured. The assay of cell density can be done in
a 96-well format using commercially available fluorescent nucleic
acid stains (such as Syto.RTM. 13 or CyQuant.RTM.). As a secondary,
confirmatory endpoint, a DsiRNA-peptide-mediated decrease in the
level of KRas protein expression can be evaluated using a
KRas-specific ELISA.
Example 11
Evaluation of Anti-KRAS DsiRNA Efficacy in a Mouse Model of KRAS
Misregulation
[0564] Anti-KRAS DsiRNA-peptide conjugates chosen from in vitro
assays can be further tested in mouse models, including, e.g.,
xenograft and other animal models as recited above. In one example,
mice possessing misregulated (e.g., elevated) KRAS levels are
administered a DsiRNA-peptide agent of the present invention via
hydrodynamic tail vein injection. 3-4 mice per group (divided based
upon specific DsiRNA agent tested) are injected with 50 .mu.g or
200 .mu.g of DsiRNA. Levels of KRAS RNA are evaluated using
RT-qPCR. Additionally or alternatively, levels of KRas (e.g., KRas
protein levels and/or cancer cell/tumor formation, growth or
spread) can be evaluated using an art-recognized method, or
phenotypes associated with misregulation of KRAS (e.g., tumor
formation, growth, metastasis, etc.) are monitored (optionally as a
proxy for measurement of KRAS transcript or KRas protein levels).
Active DsiRNA-peptide conjugates in such animal models can also be
subsequently tested in combination with standard
chemotherapies.
Example 12
Diagnostic Uses
[0565] The dsRNA-peptide molecules of the invention can be used in
a variety of diagnostic applications, such as in the identification
of molecular targets (e.g., RNA) in a variety of applications, for
example, in clinical, industrial, environmental, agricultural
and/or research settings. Such diagnostic use of dsRNA-peptide
molecules involves utilizing reconstituted RNAi systems, for
example, using cellular lysates or partially purified cellular
lysates. dsRNA-peptide molecules of this invention can be used as
diagnostic tools to examine genetic drift and mutations within
diseased cells. The close relationship between dsRNA-peptide
activity and the structure of the target RNA allows the detection
of mutations in any region of the target molecule, which alters the
base-pairing and three-dimensional structure of the target RNA. By
using multiple dsRNA-peptide molecules described in this invention,
one can map nucleotide changes, which are important to RNA
structure and function in vitro, as well as in cells and tissues.
Cleavage of target RNAs with DsiRNA molecules can be used to
inhibit gene expression and define the role of specified gene
products in the progression of a disease or disorder associated
with a particular target. In this manner, other genetic targets can
be defined as important mediators of a disease. These experiments
will lead to better treatment of the disease progression by
affording the possibility of combination therapies (e.g., multiple
DsiRNA molecules targeted to different genes, DsiRNA molecules
coupled with known small molecule inhibitors, or intermittent
treatment with combinations of DsiRNA molecules and/or other
chemical or biological molecules). Other in vitro uses of DsiRNA
molecules of this invention are well known in the art, and include
detection of the presence of RNAs associated with a disease or
related condition. Such RNA is detected by determining the presence
of a cleavage product after treatment with a DsiRNA using standard
methodologies, for example, fluorescence resonance emission
transfer (FRET).
[0566] In a specific example, DsiRNA molecules that cleave only
wild-type or mutant or polymorphic forms of the target KRAS RNA are
used for the assay. The first DsiRNA molecules (i.e., those that
cleave only wild-type forms of target KRAS RNA) are used to
identify wild-type KRAS RNA present in the sample and the second
DsiRNA molecules (i.e., those that cleave only mutant or
polymorphic forms of target RNA) are used to identify mutant or
polymorphic KRAS RNA in the sample. As reaction controls, synthetic
substrates of both wild-type and mutant or polymorphic KRAS RNA are
cleaved by both DsiRNA molecules to demonstrate the relative DsiRNA
efficiencies in the reactions and the absence of cleavage of the
"non-targeted" KRAS RNA species. The cleavage products from the
synthetic substrates also serve to generate size markers for the
analysis of wild-type and mutant KRAS RNAs in the sample
population. Thus, each analysis requires two DsiRNA molecules, two
substrates and one unknown sample, which is combined into six
reactions. The presence of cleavage products is determined using an
RNase protection assay so that full-length and cleavage fragments
of each KRAS RNA can be analyzed in one lane of a polyacrylamide
gel. It is not absolutely required to quantify the results to gain
insight into the expression of mutant or polymorphic KRAS RNAs and
putative risk of KRAS-associated phenotypic changes in target
cells. The expression of KRAS mRNA whose protein product is
implicated in the development of the phenotype (i.e., disease
related/associated) is adequate to establish risk. If probes of
comparable specific activity are used for both transcripts, then a
qualitative comparison of KRAS RNA levels is adequate and decreases
the cost of the initial diagnosis. Higher mutant or polymorphic
form to wild-type ratios are correlated with higher risk whether
KRAS RNA levels are compared qualitatively or quantitatively.
[0567] All patents and publications mentioned in the specification
are indicative of the levels of skill of those skilled in the art
to which the invention pertains. All references cited in this
disclosure are incorporated by reference to the same extent as if
each reference had been incorporated by reference in its entirety
individually.
[0568] One skilled in the art would readily appreciate that the
present invention is well adapted to carry out the objects and
obtain the ends and advantages mentioned, as well as those inherent
therein. The methods and compositions described herein as presently
representative of preferred embodiments are exemplary and are not
intended as limitations on the scope of the invention. Changes
therein and other uses will occur to those skilled in the art,
which are encompassed within the spirit of the invention, are
defined by the scope of the claims.
[0569] It will be readily apparent to one skilled in the art that
varying substitutions and modifications can be made to the
invention disclosed herein without departing from the scope and
spirit of the invention. Thus, such additional embodiments are
within the scope of the present invention and the following claims.
The present invention teaches one skilled in the art to test
various combinations and/or substitutions of chemical modifications
described herein toward generating nucleic acid constructs with
improved activity for mediating RNAi activity. Such improved
activity can comprise improved stability, improved bioavailability,
and/or improved activation of cellular responses mediating RNAi.
Therefore, the specific embodiments described herein are not
limiting and one skilled in the art can readily appreciate that
specific combinations of the modifications described herein can be
tested without undue experimentation toward identifying DsiRNA
molecules with improved RNAi activity.
[0570] The invention illustratively described herein suitably can
be practiced in the absence of any element or elements, limitation
or limitations that are not specifically disclosed herein. Thus,
for example, in each instance herein any of the terms "comprising",
"consisting essentially of", and "consisting of" may be replaced
with either of the other two terms. The terms and expressions which
have been employed are used as terms of description and not of
limitation, and there is no intention that in the use of such terms
and expressions of excluding any equivalents of the features shown
and described or portions thereof, but it is recognized that
various modifications are possible within the scope of the
invention claimed. Thus, it should be understood that although the
present invention has been specifically disclosed by preferred
embodiments, optional features, modification and variation of the
concepts herein disclosed may be resorted to by those skilled in
the art, and that such modifications and variations are considered
to be within the scope of this invention as defined by the
description and the appended claims.
[0571] In addition, where features or aspects of the invention are
described in terms of Markush groups or other grouping of
alternatives, those skilled in the art will recognize that the
invention is also thereby described in terms of any individual
member or subgroup of members of the Markush group or other
group.
[0572] The use of the terms "a" and "an" and "the" and similar
referents in the context of describing the invention (especially in
the context of the following claims) are to be construed to cover
both the singular and the plural, unless otherwise indicated herein
or clearly contradicted by context. The terms "comprising,"
"having," "including," and "containing" are to be construed as
open-ended terms (i.e., meaning "including, but not limited to,")
unless otherwise noted. Recitation of ranges of values herein are
merely intended to serve as a shorthand method of referring
individually to each separate value falling within the range,
unless otherwise indicated herein, and each separate value is
incorporated into the specification as if it were individually
recited herein. All methods described herein can be performed in
any suitable order unless otherwise indicated herein or otherwise
clearly contradicted by context. The use of any and all examples,
or exemplary language (e.g., "such as") provided herein, is
intended merely to better illuminate the invention and does not
pose a limitation on the scope of the invention unless otherwise
claimed. No language in the specification should be construed as
indicating any non-claimed element as essential to the practice of
the invention.
[0573] Embodiments of this invention are described herein,
including the best mode known to the inventors for carrying out the
invention. Variations of those embodiments may become apparent to
those of ordinary skill in the art upon reading the foregoing
description.
[0574] The inventors expect skilled artisans to employ such
variations as appropriate, and the inventors intend for the
invention to be practiced otherwise than as specifically described
herein. Accordingly, this invention includes all modifications and
equivalents of the subject matter recited in the claims appended
hereto as permitted by applicable law. Moreover, any combination of
the above-described elements in all possible variations thereof is
encompassed by the invention unless otherwise indicated herein or
otherwise clearly contradicted by context. Those skilled in the art
will recognize, or be able to ascertain using no more than routine
experimentation, many equivalents to the specific embodiments of
the invention described herein. Such equivalents are intended to be
encompassed by the following claims.
Sequence CWU 1
1
161123PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 1Val Arg Gly Ile Ile Thr Ser Lys Thr Lys Ser Leu
Asp Lys Gly Tyr1 5 10 15Asn Lys Ala Leu Asn Asp Leu
20223PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 2Val Arg Gly Ile Ile Pro Phe Lys Thr Lys Ser Leu
Asp Glu Gly Tyr1 5 10 15Asn Lys Ala Leu Asn Asp Leu
2038PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 3Lys Ser Val Lys Ala Pro Gly Ile1
5415PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 4His Lys Ala Ile Asp Gly Arg Ser Leu Tyr Asn Lys
Thr Leu Asp1 5 10 15512PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 5Leu Arg Leu Thr Lys Asn Ser
Arg Asp Asp Ser Thr1 5 10613PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 6Lys Asn Ile Val Ser Val Lys
Gly Ile Arg Lys Ser Ile1 5 10715PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptide 7Lys Ser Val Ile Pro Arg
Lys Gly Thr Lys Ala Pro Pro Arg Leu1 5 10 15813PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 8Lys
Pro Val Met Tyr Lys Asn Thr Gly Lys Ser Glu Gln1 5
10918PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 9Glu Phe Val Met Asn Pro Ala Asn Ala Gln Gly His
Thr Pro Gly Thr1 5 10 15Arg Leu1018PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 10Glu
Phe Val Met Asn Pro Ala Asn Ala Gln Gly His Thr Ala Gly Thr1 5 10
15Arg Leu1118PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 11Glu Phe Val Met Asn Ala Ala Asn Ala
Gln Gly His Thr Pro Gly Thr1 5 10 15Arg Leu1219PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 12Glu
Phe Val Met Asn Pro Ala Asn Ala Gln Gly Arg His Thr Pro Gly1 5 10
15Thr Arg Leu1321PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 13Asn Pro Lys Glu Phe Val Met Asn Pro
Ala Asn Ala Gln Gly His Thr1 5 10 15Pro Gly Thr Arg Leu
201422PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 14Asn Pro Lys Glu Phe Val Met Asn Pro Ala Asn Ala
Gln Gly Arg His1 5 10 15Thr Pro Gly Thr Arg Leu 201527PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 15Lys
Lys Ile Ile Pro Pro Thr Asn Ile Arg Glu Asn Leu Tyr Asn Arg1 5 10
15Thr Ala Ser Leu Thr Asp Leu Gly Gly Glu Leu 20
251624PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 16Cys Val Arg Gly Ile Ile Thr Ser Lys Thr Lys Ser
Leu Asp Lys Gly1 5 10 15Tyr Asn Lys Ala Leu Asn Asp Leu
201724PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 17Cys Val Arg Gly Ile Ile Pro Phe Lys Thr Lys Ser
Leu Asp Glu Gly1 5 10 15Tyr Asn Lys Ala Leu Asn Asp Leu
20189PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 18Cys Lys Ser Val Lys Ala Pro Gly Ile1
51916PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 19Cys His Lys Ala Ile Asp Gly Arg Ser Leu Tyr Asn
Lys Thr Leu Asp1 5 10 152013PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 20Cys Leu Arg Leu Thr Lys Asn
Ser Arg Asp Asp Ser Thr1 5 102114PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptide 21Cys Lys Asn Ile Val Ser
Val Lys Gly Ile Arg Lys Ser Ile1 5 102216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 22Cys
Lys Ser Val Ile Pro Arg Lys Gly Thr Lys Ala Pro Pro Arg Leu1 5 10
152314PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 23Cys Lys Pro Val Met Tyr Lys Asn Thr Gly Lys Ser
Glu Gln1 5 102419PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 24Cys Glu Phe Val Met Asn Pro Ala Asn
Ala Gln Gly His Thr Pro Gly1 5 10 15Thr Arg Leu2519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 25Cys
Glu Phe Val Met Asn Pro Ala Asn Ala Gln Gly His Thr Ala Gly1 5 10
15Thr Arg Leu2619PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 26Cys Glu Phe Val Met Asn Ala Ala Asn
Ala Gln Gly His Thr Pro Gly1 5 10 15Thr Arg Leu2720PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 27Cys
Glu Phe Val Met Asn Pro Ala Asn Ala Gln Gly Arg His Thr Pro1 5 10
15Gly Thr Arg Leu 202822PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 28Cys Asn Pro Lys Glu Phe Val
Met Asn Pro Ala Asn Ala Gln Gly His1 5 10 15Thr Pro Gly Thr Arg Leu
202923PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 29Cys Asn Pro Lys Glu Phe Val Met Asn Pro Ala Asn
Ala Gln Gly Arg1 5 10 15His Thr Pro Gly Thr Arg Leu
203028PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 30Cys Lys Lys Ile Ile Pro Pro Thr Asn Ile Arg Glu
Asn Leu Tyr Asn1 5 10 15Arg Thr Ala Ser Leu Thr Asp Leu Gly Gly Glu
Leu 20 253124PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 31Gly Val Arg Gly Ile Ile Thr Ser Lys
Thr Lys Ser Leu Asp Lys Gly1 5 10 15Tyr Asn Lys Ala Leu Asn Asp Leu
203224PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 32Gly Val Arg Gly Ile Ile Pro Phe Lys Thr Lys Ser
Leu Asp Glu Gly1 5 10 15Tyr Asn Lys Ala Leu Asn Asp Leu
20339PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 33Gly Lys Ser Val Lys Ala Pro Gly Ile1
53416PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 34Gly His Lys Ala Ile Asp Gly Arg Ser Leu Tyr Asn
Lys Thr Leu Asp1 5 10 153513PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 35Gly Leu Arg Leu Thr Lys Asn
Ser Arg Asp Asp Ser Thr1 5 103614PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptide 36Gly Lys Asn Ile Val Ser
Val Lys Gly Ile Arg Lys Ser Ile1 5 103716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 37Gly
Lys Ser Val Ile Pro Arg Lys Gly Thr Lys Ala Pro Pro Arg Leu1 5 10
153814PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 38Gly Lys Pro Val Met Tyr Lys Asn Thr Gly Lys Ser
Glu Gln1 5 103919PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 39Gly Glu Phe Val Met Asn Pro Ala Asn
Ala Gln Gly His Thr Pro Gly1 5 10 15Thr Arg Leu4019PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 40Gly
Glu Phe Val Met Asn Pro Ala Asn Ala Gln Gly His Thr Ala Gly1 5 10
15Thr Arg Leu4119PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 41Gly Glu Phe Val Met Asn Ala Ala Asn
Ala Gln Gly His Thr Pro Gly1 5 10 15Thr Arg Leu4220PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 42Gly
Glu Phe Val Met Asn Pro Ala Asn Ala Gln Gly Arg His Thr Pro1 5 10
15Gly Thr Arg Leu 204322PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 43Gly Asn Pro Lys Glu Phe Val
Met Asn Pro Ala Asn Ala Gln Gly His1 5 10 15Thr Pro Gly Thr Arg Leu
204423PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 44Gly Asn Pro Lys Glu Phe Val Met Asn Pro Ala Asn
Ala Gln Gly Arg1 5 10 15His Thr Pro Gly Thr Arg Leu
204528PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 45Gly Lys Lys Ile Ile Pro Pro Thr Asn Ile Arg Glu
Asn Leu Tyr Asn1 5 10 15Arg Thr Ala Ser Leu Thr Asp Leu Gly Gly Glu
Leu 20 254624PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 46Val Arg Gly Ile Ile Thr Ser Lys Thr
Lys Ser Leu Asp Lys Gly Tyr1 5 10 15Asn Lys Ala Leu Asn Asp Leu Cys
204724PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 47Val Arg Gly Ile Ile Pro Phe Lys Thr Lys Ser Leu
Asp Glu Gly Tyr1 5 10 15Asn Lys Ala Leu Asn Asp Leu Cys
20489PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 48Lys Ser Val Lys Ala Pro Gly Ile Cys1
54916PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 49His Lys Ala Ile Asp Gly Arg Ser Leu Tyr Asn Lys
Thr Leu Asp Cys1 5 10 155013PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 50Leu Arg Leu Thr Lys Asn Ser
Arg Asp Asp Ser Thr Cys1 5 105114PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptide 51Lys Asn Ile Val Ser Val
Lys Gly Ile Arg Lys Ser Ile Cys1 5 105216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 52Lys
Ser Val Ile Pro Arg Lys Gly Thr Lys Ala Pro Pro Arg Leu Cys1 5 10
155314PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 53Lys Pro Val Met Tyr Lys Asn Thr Gly Lys Ser Glu
Gln Cys1 5 105419PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 54Glu Phe Val Met Asn Pro Ala Asn Ala
Gln Gly His Thr Pro Gly Thr1 5 10 15Arg Leu Cys5519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 55Glu
Phe Val Met Asn Pro Ala Asn Ala Gln Gly His Thr Ala Gly Thr1 5 10
15Arg Leu Cys5619PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 56Glu Phe Val Met Asn Ala Ala Asn Ala
Gln Gly His Thr Pro Gly Thr1 5 10 15Arg Leu Cys5720PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 57Glu
Phe Val Met Asn Pro Ala Asn Ala Gln Gly Arg His Thr Pro Gly1 5 10
15Thr Arg Leu Cys 205822PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 58Asn Pro Lys Glu Phe Val Met
Asn Pro Ala Asn Ala Gln Gly His Thr1 5 10 15Pro Gly Thr Arg Leu Cys
205923PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 59Asn Pro Lys Glu Phe Val Met Asn Pro Ala Asn Ala
Gln Gly Arg His1 5 10 15Thr Pro Gly Thr Arg Leu Cys
206028PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 60Lys Lys Ile Ile Pro Pro Thr Asn Ile Arg Glu Asn
Leu Tyr Asn Arg1 5 10 15Thr Ala Ser Leu Thr Asp Leu Gly Gly Glu Leu
Cys 20 256118PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 61Lys Ser Val Lys Ala Pro Gly Ile Gly
Gly Lys Ser Val Lys Ala Pro1 5 10 15Gly Ile6228PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 62Lys
Ser Val Lys Ala Pro Gly Ile Gly Gly Lys Ser Val Lys Ala Pro1 5 10
15Gly Ile Gly Gly Lys Ser Val Lys Ala Pro Gly Ile 20
256310PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 63Lys Ser Val Lys Ala Pro Gly Ile Gly Gly1 5
106419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 64Cys Lys Ser Val Lys Ala Pro Gly Ile Gly Gly Lys
Ser Val Lys Ala1 5 10 15Pro Gly Ile6529PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 65Cys
Lys Ser Val Lys Ala Pro Gly Ile Gly Gly Lys Ser Val Lys Ala1 5 10
15Pro Gly Ile Gly Gly Lys Ser Val Lys Ala Pro Gly Ile 20
256623PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 66Gly Leu Phe Gly Ala Ile Ala Gly Phe Ile Glu Asn
Gly Trp Glu Gly1 5 10 15Met Ile Asp Gly Trp Tyr Gly
206724PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 67Cys Gly Leu Phe Gly Ala Ile Ala Gly Phe Ile Glu
Asn Gly Trp Glu1 5 10 15Gly Met Ile Asp Gly Trp Tyr Gly
206824PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 68Gly Leu Phe Gly Ala Ile Ala Gly Phe Ile Glu Asn
Gly Trp Glu Gly1 5 10 15Met Ile Asp Gly Trp Tyr Gly Cys
20696PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 69Gly Arg Gly Asp Gly Gly1 5706PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 70Cys
Arg Gly Asp Gly Gly1 5716PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 71Gly Arg Gly Asp Gly Cys1
5727PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 72Thr His Ala Leu Trp His Thr1 5738PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 73Gly
Thr His Ala Leu Trp His Thr1 5748PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptide 74Thr His Ala Leu Trp His
Thr Gly1 5758PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 75Cys Thr His Ala Leu Trp His Thr1
5768PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 76Thr His Ala Leu Trp His Thr Cys1
57715PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 77Gln Pro Phe Met Gln Cys Leu Cys Leu Ile Tyr Asp
Ala Ser Cys1 5 10 157816PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 78Gly Gln Pro Phe Met Gln Cys
Leu Cys Leu Ile Tyr Asp Ala Ser Cys1 5 10 157916PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 79Gln
Pro Phe Met Gln Cys Leu Cys Leu Ile Tyr Asp Ala Ser Cys Gly1 5 10
158015PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 80Arg Asn Val Pro Pro Ile Phe Asn Asp Val Tyr Trp
Ile Ala Phe1 5 10 158116PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 81Gly Arg Asn Val Pro Pro Ile
Phe Asn Asp Val Tyr Trp Ile Ala Phe1 5 10 158216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 82Arg
Asn Val Pro Pro Ile Phe Asn Asp Val Tyr Trp Ile Ala Phe Gly1 5 10
158316PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 83Cys Arg Asn Val Pro Pro Ile Phe Asn Asp Val Tyr
Trp Ile Ala Phe1 5 10 158416PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 84Arg Asn Val Pro Pro Ile Phe
Asn Asp Val Tyr Trp Ile Ala Phe Cys1 5 10 158514PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 85Val
Phe Arg Val Arg Pro Trp Tyr Gln Ser Thr Ser Gln Ser1 5
108615PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 86Gly Val Phe Arg Val Arg Pro Trp Tyr
Gln Ser Thr Ser Gln Ser1 5 10 158715PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 87Val
Phe Arg Val Arg Pro Trp Tyr Gln Ser Thr Ser Gln Ser Gly1 5 10
158815PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 88Cys Val Phe Arg Val Arg Pro Trp Tyr Gln Ser Thr
Ser Gln Ser1 5 10 158915PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 89Val Phe Arg Val Arg Pro Trp
Tyr Gln Ser Thr Ser Gln Ser Cys1 5 10 1590115PRTHomo sapiens 90Met
Ile Pro Ala Lys Asp Met Ala Lys Val Met Ile Val Met Leu Ala1 5 10
15Ile Cys Phe Leu Thr Lys Ser Asp Gly Lys Ser Val Lys Lys Arg Ser
20 25 30Val Ser Glu Ile Gln Leu Met His Asn Leu Gly Lys His Leu Asn
Ser 35 40 45Met Glu Arg Val Glu Trp Leu Arg Lys Lys Leu Gln Asp Val
His Asn 50 55 60Phe Val Ala Leu Gly Ala Pro Leu Ala Pro Arg Asp Ala
Gly Ser Gln65 70 75 80Arg Pro Arg Lys Lys Glu Asp Asn Val Leu Val
Glu Ser His Glu Lys 85 90 95Ser Leu Gly Glu Ala Asp Lys Ala Asp Val
Asn Val Leu Thr Lys Ala 100 105 110Lys Ser Gln 11591138PRTHomo
sapiens 91Met Thr Ala Leu Phe Leu Met Ser Met Leu Phe Gly Leu Ala
Cys Gly1 5 10 15Gln Ala Met Ser Phe Cys Ile Pro Thr Glu Tyr Thr Met
His Ile Glu 20 25 30Arg Arg Glu Cys Ala Tyr Cys Leu Thr Ile Asn Thr
Thr Ile Cys Ala 35 40 45Gly Tyr Cys Met Thr Arg Asp Ile Asn Gly Lys
Leu Phe Leu Pro Lys 50 55 60Tyr Ala Leu Ser Gln Asp Val Cys Thr Tyr
Arg Asp Phe Ile Tyr Arg65 70 75 80Thr Val Glu Ile Pro Gly Cys Pro
Leu His Val Ala Pro Tyr Phe Ser 85 90 95Tyr Pro Val Ala Leu Ser Cys
Lys Cys Gly Lys Cys Asn Thr Asp Tyr 100 105 110Ser Asp Cys Ile His
Glu Ala Ile Lys Thr Asn Tyr Cys Thr Lys Pro 115 120 125Gln Lys Ser
Tyr Leu Val Gly Phe Ser Val 130 13592242PRTHomo sapiens 92Met Pro
Gly Pro Trp Leu Leu Leu Ala Leu Ala Leu Thr Leu Asn Leu1 5 10 15Thr
Gly Val Pro Gly Gly Arg Ala Gln Pro Glu Ala Ala Gln Gln Glu 20 25
30Ala Val Thr Ala Ala Glu His Pro Gly Leu Asp Asp Phe Leu Arg Gln
35 40 45Val Glu Arg Leu Leu Phe Leu Arg Glu Asn Ile Gln Arg Leu Gln
Gly 50 55 60Asp Gln Gly Glu His Ser Ala Ser Gln Ile Phe Gln Ser Asp
Trp Leu65 70 75 80Ser Lys Arg Gln His Pro Gly Lys Arg Glu Glu Glu
Glu Glu Glu Gly 85 90 95Val Glu Glu Glu Glu Glu Glu Glu Gly Gly Ala
Val Gly Pro His Lys 100 105 110Arg Gln His Pro Gly Arg Arg Glu Asp
Glu Ala Ser Trp Ser Val Asp 115 120 125Val Thr Gln His Lys Arg Gln
His Pro Gly Arg Arg Ser Pro Trp Leu 130 135 140Ala Tyr Ala Val Pro
Lys Arg Gln His Pro Gly Arg Arg Leu Ala Asp145 150 155 160Pro Lys
Ala Gln Arg Ser Trp Glu Glu Glu Glu Glu Glu Glu Glu Arg 165 170
175Glu Glu Asp Leu Met Pro Glu Lys Arg Gln His Pro Gly Lys Arg Ala
180 185 190Leu Gly Gly Pro Cys Gly Pro Gln Gly Ala Tyr Gly Gln Ala
Gly Leu 195 200 205Leu Leu Gly Leu Leu Asp Asp Leu Ser Arg Ser Gln
Gly Ala Glu Glu 210 215 220Lys Arg Gln His Pro Gly Arg Arg Ala Ala
Trp Val Arg Glu Pro Leu225 230 235 240Glu Glu9392PRTHomo sapiens
93Met Lys Pro Ile Gln Lys Leu Leu Ala Gly Leu Ile Leu Leu Thr Trp1
5 10 15Cys Val Glu Gly Cys Ser Ser Gln His Trp Ser Tyr Gly Leu Arg
Pro 20 25 30Gly Gly Lys Arg Asp Ala Glu Asn Leu Ile Asp Ser Phe Gln
Glu Ile 35 40 45Val Lys Glu Val Gly Gln Leu Ala Glu Thr Gln Arg Phe
Glu Cys Thr 50 55 60Thr His Gln Pro Arg Ser Pro Leu Arg Asp Leu Lys
Gly Ala Leu Glu65 70 75 80Ser Leu Ile Glu Glu Glu Thr Gly Gln Lys
Lys Ile 85 9094120PRTHomo sapiens 94Met Ala Ser Ser Arg Arg Gly Leu
Leu Leu Leu Leu Leu Leu Thr Ala1 5 10 15His Leu Gly Pro Ser Glu Ala
Gln His Trp Ser His Gly Trp Tyr Pro 20 25 30Gly Gly Lys Arg Ala Leu
Ser Ser Ala Gln Asp Pro Gln Asn Ala Leu 35 40 45Arg Pro Pro Gly Arg
Ala Leu Asp Thr Ala Ala Gly Ser Pro Val Gln 50 55 60Thr Ala His Gly
Leu Pro Ser Asp Ala Leu Ala Pro Leu Asp Asp Ser65 70 75 80Met Pro
Trp Glu Gly Arg Thr Thr Ala Gln Trp Ser Leu His Arg Lys 85 90 95Arg
His Leu Ala Arg Thr Leu Leu Thr Ala Ala Arg Glu Pro Arg Pro 100 105
110Ala Pro Pro Ser Ser Asn Lys Val 115 12095196PRTHomo sapiens
95Met Arg Leu Pro Leu Leu Val Ser Ala Gly Val Leu Leu Val Ala Leu1
5 10 15Leu Pro Cys Pro Pro Cys Arg Ala Leu Leu Ser Arg Gly Pro Val
Pro 20 25 30Gly Ala Arg Gln Ala Pro Gln His Pro Gln Pro Leu Asp Phe
Phe Gln 35 40 45Pro Pro Pro Gln Ser Glu Gln Pro Gln Gln Pro Gln Ala
Arg Pro Val 50 55 60Leu Leu Arg Met Gly Glu Glu Tyr Phe Leu Arg Leu
Gly Asn Leu Asn65 70 75 80Lys Ser Pro Ala Ala Pro Leu Ser Pro Ala
Ser Ser Leu Leu Ala Gly 85 90 95Gly Ser Gly Ser Arg Pro Ser Pro Glu
Gln Ala Thr Ala Asn Phe Phe 100 105 110Arg Val Leu Leu Gln Gln Leu
Leu Leu Pro Arg Arg Ser Leu Asp Ser 115 120 125Pro Ala Ala Leu Ala
Glu Arg Gly Ala Arg Asn Ala Leu Gly Gly His 130 135 140Gln Glu Ala
Pro Glu Arg Glu Arg Arg Ser Glu Glu Pro Pro Ile Ser145 150 155
160Leu Asp Leu Thr Phe His Leu Leu Arg Glu Val Leu Glu Met Ala Arg
165 170 175Ala Glu Gln Leu Ala Gln Gln Ala His Ser Asn Arg Lys Leu
Met Glu 180 185 190Ile Ile Gly Lys 19596267PRTHomo sapiens 96Met
Pro Arg Ser Cys Cys Ser Arg Ser Gly Ala Leu Leu Leu Ala Leu1 5 10
15Leu Leu Gln Ala Ser Met Glu Val Arg Gly Trp Cys Leu Glu Ser Ser
20 25 30Gln Cys Gln Asp Leu Thr Thr Glu Ser Asn Leu Leu Glu Cys Ile
Arg 35 40 45Ala Cys Lys Pro Asp Leu Ser Ala Glu Thr Pro Met Phe Pro
Gly Asn 50 55 60Gly Asp Glu Gln Pro Leu Thr Glu Asn Pro Arg Lys Tyr
Val Met Gly65 70 75 80His Phe Arg Trp Asp Arg Phe Gly Arg Arg Asn
Ser Ser Ser Ser Gly 85 90 95Ser Ser Gly Ala Gly Gln Lys Arg Glu Asp
Val Ser Ala Gly Glu Asp 100 105 110Cys Gly Pro Leu Pro Glu Gly Gly
Pro Glu Pro Arg Ser Asp Gly Ala 115 120 125Lys Pro Gly Pro Arg Glu
Gly Lys Arg Ser Tyr Ser Met Glu His Phe 130 135 140Arg Trp Gly Lys
Pro Val Gly Lys Lys Arg Arg Pro Val Lys Val Tyr145 150 155 160Pro
Asn Gly Ala Glu Asp Glu Ser Ala Glu Ala Phe Pro Leu Glu Phe 165 170
175Lys Arg Glu Leu Thr Gly Gln Arg Leu Arg Glu Gly Asp Gly Pro Asp
180 185 190Gly Pro Ala Asp Asp Gly Ala Gly Ala Gln Ala Asp Leu Glu
His Ser 195 200 205Leu Leu Val Ala Ala Glu Lys Lys Asp Glu Gly Pro
Tyr Arg Met Glu 210 215 220His Phe Arg Trp Gly Ser Pro Pro Lys Asp
Lys Arg Tyr Gly Gly Phe225 230 235 240Met Thr Ser Glu Lys Ser Gln
Thr Pro Leu Val Thr Leu Phe Lys Asn 245 250 255Ala Ile Ile Lys Asn
Ala Tyr Lys Lys Gly Glu 260 26597622PRTHomo sapiens 97Met Ala His
Val Arg Gly Leu Gln Leu Pro Gly Cys Leu Ala Leu Ala1 5 10 15Ala Leu
Cys Ser Leu Val His Ser Gln His Val Phe Leu Ala Pro Gln 20 25 30Gln
Ala Arg Ser Leu Leu Gln Arg Val Arg Arg Ala Asn Thr Phe Leu 35 40
45Glu Glu Val Arg Lys Gly Asn Leu Glu Arg Glu Cys Val Glu Glu Thr
50 55 60Cys Ser Tyr Glu Glu Ala Phe Glu Ala Leu Glu Ser Ser Thr Ala
Thr65 70 75 80Asp Val Phe Trp Ala Lys Tyr Thr Ala Cys Glu Thr Ala
Arg Thr Pro 85 90 95Arg Asp Lys Leu Ala Ala Cys Leu Glu Gly Asn Cys
Ala Glu Gly Leu 100 105 110Gly Thr Asn Tyr Arg Gly His Val Asn Ile
Thr Arg Ser Gly Ile Glu 115 120 125Cys Gln Leu Trp Arg Ser Arg Tyr
Pro His Lys Pro Glu Ile Asn Ser 130 135 140Thr Thr His Pro Gly Ala
Asp Leu Gln Glu Asn Phe Cys Arg Asn Pro145 150 155 160Asp Ser Ser
Thr Thr Gly Pro Trp Cys Tyr Thr Thr Asp Pro Thr Val 165 170 175Arg
Arg Gln Glu Cys Ser Ile Pro Val Cys Gly Gln Asp Gln Val Thr 180 185
190Val Ala Met Thr Pro Arg Ser Glu Gly Ser Ser Val Asn Leu Ser Pro
195 200 205Pro Leu Glu Gln Cys Val Pro Asp Arg Gly Gln Gln Tyr Gln
Gly Arg 210 215 220Leu Ala Val Thr Thr His Gly Leu Pro Cys Leu Ala
Trp Ala Ser Ala225 230 235 240Gln Ala Lys Ala Leu Ser Lys His Gln
Asp Phe Asn Ser Ala Val Gln 245 250 255Leu Val Glu Asn Phe Cys Arg
Asn Pro Asp Gly Asp Glu Glu Gly Val 260 265 270Trp Cys Tyr Val Ala
Gly Lys Pro Gly Asp Phe Gly Tyr Cys Asp Leu 275 280 285Asn Tyr Cys
Glu Glu Ala Val Glu Glu Glu Thr Gly Asp Gly Leu Asp 290 295 300Glu
Asp Ser Asp Arg Ala Ile Glu Gly Arg Thr Ala Thr Ser Glu Tyr305 310
315 320Gln Thr Phe Phe Asn Pro Arg Thr Phe Gly Ser Gly Glu Ala Asp
Cys 325 330 335Gly Leu Arg Pro Leu Phe Glu Lys Lys Ser Leu Glu Asp
Lys Thr Glu 340 345 350Arg Glu Leu Leu Glu Ser Tyr Ile Asp Gly Arg
Ile Val Glu Gly Ser 355 360 365Asp Ala Glu Ile Gly Met Ser Pro Trp
Gln Val Met Leu Phe Arg Lys 370 375 380Ser Pro Gln Glu Leu Leu Cys
Gly Ala Ser Leu Ile Ser Asp Arg Trp385 390 395 400Val Leu Thr Ala
Ala His Cys Leu Leu Tyr Pro Pro Trp Asp Lys Asn 405 410 415Phe Thr
Glu Asn Asp Leu Leu Val Arg Ile Gly Lys His Ser Arg Thr 420 425
430Arg Tyr Glu Arg Asn Ile Glu Lys Ile Ser Met Leu Glu Lys Ile Tyr
435 440 445Ile His Pro Arg Tyr Asn Trp Arg Glu Asn Leu Asp Arg Asp
Ile Ala 450 455 460Leu Met Lys Leu Lys Lys Pro Val Ala Phe Ser Asp
Tyr Ile His Pro465 470 475 480Val Cys Leu Pro Asp Arg Glu Thr Ala
Ala Ser Leu Leu Gln Ala Gly 485 490 495Tyr Lys Gly Arg Val Thr Gly
Trp Gly Asn Leu Lys Glu Thr Trp Thr 500 505 510Ala Asn Val Gly Lys
Gly Gln Pro Ser Val Leu Gln Val Val Asn Leu 515 520 525Pro Ile Val
Glu Arg Pro Val Cys Lys Asp Ser Thr Arg Ile Arg Ile 530 535 540Thr
Asp Asn Met Phe Cys Ala Gly Tyr Lys Pro Asp Glu Gly Lys Arg545 550
555 560Gly Asp Ala Cys Glu Gly Asp Ser Gly Gly Pro Phe Val Met Lys
Ser 565 570 575Pro Phe Asn Asn Arg Trp Tyr Gln Met Gly Ile Val Ser
Trp Gly Glu 580 585 590Gly Cys Asp Arg Asp Gly Lys Tyr Gly Phe Tyr
Thr His Val Phe Arg 595 600 605Leu Lys Lys Trp Ile Gln Lys Val Ile
Asp Gln Phe Gly Glu 610 615 620981663PRTHomo sapiens 98Met Gly Pro
Thr Ser Gly Pro Ser Leu Leu Leu Leu Leu Leu Thr His1 5 10 15Leu Pro
Leu Ala Leu Gly Ser Pro Met Tyr Ser Ile Ile Thr Pro Asn 20 25 30Ile
Leu Arg Leu Glu Ser Glu Glu Thr Met Val Leu Glu Ala His Asp 35 40
45Ala Gln Gly Asp Val Pro Val Thr Val Thr Val His Asp Phe Pro Gly
50 55 60Lys Lys Leu Val Leu Ser Ser Glu Lys Thr Val Leu Thr Pro Ala
Thr65 70 75 80Asn His Met Gly Asn Val Thr Phe Thr Ile Pro Ala Asn
Arg Glu Phe 85 90 95Lys Ser Glu Lys Gly Arg Asn Lys Phe Val Thr Val
Gln Ala Thr Phe 100 105 110Gly Thr Gln Val Val Glu Lys Val Val Leu
Val Ser Leu Gln Ser Gly 115 120 125Tyr Leu Phe Ile Gln Thr Asp Lys
Thr Ile Tyr Thr Pro Gly Ser Thr 130 135 140Val Leu Tyr Arg Ile Phe
Thr Val Asn His Lys Leu Leu Pro Val Gly145 150 155 160Arg Thr Val
Met Val Asn Ile Glu Asn Pro Glu Gly Ile Pro Val Lys 165 170 175Gln
Asp Ser Leu Ser Ser Gln Asn Gln Leu Gly Val Leu Pro Leu Ser 180 185
190Trp Asp Ile Pro Glu Leu Val Asn Met Gly Gln Trp Lys Ile Arg Ala
195 200 205Tyr Tyr Glu Asn Ser Pro Gln Gln Val Phe Ser Thr Glu Phe
Glu Val 210 215 220Lys Glu Tyr Val Leu Pro Ser Phe Glu Val Ile Val
Glu Pro Thr Glu225 230 235 240Lys Phe Tyr Tyr Ile Tyr Asn Glu Lys
Gly Leu Glu Val Thr Ile Thr 245 250 255Ala Arg Phe Leu Tyr Gly Lys
Lys Val Glu Gly Thr Ala Phe Val Ile 260 265 270Phe Gly Ile Gln Asp
Gly Glu Gln Arg Ile Ser Leu Pro Glu Ser Leu 275 280 285Lys Arg Ile
Pro Ile Glu Asp Gly Ser Gly Glu Val Val Leu Ser Arg 290 295 300Lys
Val Leu Leu Asp Gly Val Gln Asn Pro Arg Ala Glu Asp Leu Val305 310
315 320Gly Lys Ser Leu Tyr Val Ser Ala Thr Val Ile Leu His Ser Gly
Ser 325 330 335Asp Met Val Gln Ala Glu Arg Ser Gly Ile Pro Ile Val
Thr Ser Pro 340 345 350Tyr Gln Ile His Phe Thr Lys Thr Pro Lys Tyr
Phe Lys Pro Gly Met 355 360 365Pro Phe Asp Leu Met Val Phe Val Thr
Asn Pro Asp Gly Ser Pro Ala 370 375 380Tyr Arg Val Pro Val Ala Val
Gln Gly Glu Asp Thr Val Gln Ser Leu385 390 395 400Thr Gln Gly Asp
Gly Val Ala Lys Leu Ser Ile Asn Thr His Pro Ser 405 410 415Gln Lys
Pro Leu Ser Ile Thr Val Arg Thr Lys Lys Gln Glu Leu Ser 420 425
430Glu Ala Glu Gln Ala Thr Arg Thr Met Gln Ala Leu Pro Tyr Ser Thr
435 440 445Val Gly Asn Ser Asn Asn Tyr Leu His Leu Ser Val Leu Arg
Thr Glu 450 455 460Leu Arg Pro Gly Glu Thr Leu Asn Val Asn Phe Leu
Leu Arg Met Asp465 470 475 480Arg Ala His Glu Ala Lys Ile Arg Tyr
Tyr Thr Tyr Leu Ile Met Asn 485 490 495Lys Gly Arg Leu Leu Lys Ala
Gly Arg Gln Val Arg Glu Pro Gly Gln 500 505 510Asp Leu Val Val Leu
Pro Leu Ser Ile Thr Thr Asp Phe Ile Pro Ser 515 520 525Phe Arg Leu
Val Ala Tyr Tyr Thr Leu Ile Gly Ala Ser Gly Gln Arg 530 535 540Glu
Val Val Ala Asp Ser Val Trp Val Asp Val Lys Asp Ser Cys Val545
550
555 560Gly Ser Leu Val Val Lys Ser Gly Gln Ser Glu Asp Arg Gln Pro
Val 565 570 575Pro Gly Gln Gln Met Thr Leu Lys Ile Glu Gly Asp His
Gly Ala Arg 580 585 590Val Val Leu Val Ala Val Asp Lys Gly Val Phe
Val Leu Asn Lys Lys 595 600 605Asn Lys Leu Thr Gln Ser Lys Ile Trp
Asp Val Val Glu Lys Ala Asp 610 615 620Ile Gly Cys Thr Pro Gly Ser
Gly Lys Asp Tyr Ala Gly Val Phe Ser625 630 635 640Asp Ala Gly Leu
Thr Phe Thr Ser Ser Ser Gly Gln Gln Thr Ala Gln 645 650 655Arg Ala
Glu Leu Gln Cys Pro Gln Pro Ala Ala Arg Arg Arg Arg Ser 660 665
670Val Gln Leu Thr Glu Lys Arg Met Asp Lys Val Gly Lys Tyr Pro Lys
675 680 685Glu Leu Arg Lys Cys Cys Glu Asp Gly Met Arg Glu Asn Pro
Met Arg 690 695 700Phe Ser Cys Gln Arg Arg Thr Arg Phe Ile Ser Leu
Gly Glu Ala Cys705 710 715 720Lys Lys Val Phe Leu Asp Cys Cys Asn
Tyr Ile Thr Glu Leu Arg Arg 725 730 735Gln His Ala Arg Ala Ser His
Leu Gly Leu Ala Arg Ser Asn Leu Asp 740 745 750Glu Asp Ile Ile Ala
Glu Glu Asn Ile Val Ser Arg Ser Glu Phe Pro 755 760 765Glu Ser Trp
Leu Trp Asn Val Glu Asp Leu Lys Glu Pro Pro Lys Asn 770 775 780Gly
Ile Ser Thr Lys Leu Met Asn Ile Phe Leu Lys Asp Ser Ile Thr785 790
795 800Thr Trp Glu Ile Leu Ala Val Ser Met Ser Asp Lys Lys Gly Ile
Cys 805 810 815Val Ala Asp Pro Phe Glu Val Thr Val Met Gln Asp Phe
Phe Ile Asp 820 825 830Leu Arg Leu Pro Tyr Ser Val Val Arg Asn Glu
Gln Val Glu Ile Arg 835 840 845Ala Val Leu Tyr Asn Tyr Arg Gln Asn
Gln Glu Leu Lys Val Arg Val 850 855 860Glu Leu Leu His Asn Pro Ala
Phe Cys Ser Leu Ala Thr Thr Lys Arg865 870 875 880Arg His Gln Gln
Thr Val Thr Ile Pro Pro Lys Ser Ser Leu Ser Val 885 890 895Pro Tyr
Val Ile Val Pro Leu Lys Thr Gly Leu Gln Glu Val Glu Val 900 905
910Lys Ala Ala Val Tyr His His Phe Ile Ser Asp Gly Val Arg Lys Ser
915 920 925Leu Lys Val Val Pro Glu Gly Ile Arg Met Asn Lys Thr Val
Ala Val 930 935 940Arg Thr Leu Asp Pro Glu Arg Leu Gly Arg Glu Gly
Val Gln Lys Glu945 950 955 960Asp Ile Pro Pro Ala Asp Leu Ser Asp
Gln Val Pro Asp Thr Glu Ser 965 970 975Glu Thr Arg Ile Leu Leu Gln
Gly Thr Pro Val Ala Gln Met Thr Glu 980 985 990Asp Ala Val Asp Ala
Glu Arg Leu Lys His Leu Ile Val Thr Pro Ser 995 1000 1005Gly Cys
Gly Glu Gln Asn Met Ile Gly Met Thr Pro Thr Val Ile 1010 1015
1020Ala Val His Tyr Leu Asp Glu Thr Glu Gln Trp Glu Lys Phe Gly
1025 1030 1035Leu Glu Lys Arg Gln Gly Ala Leu Glu Leu Ile Lys Lys
Gly Tyr 1040 1045 1050Thr Gln Gln Leu Ala Phe Arg Gln Pro Ser Ser
Ala Phe Ala Ala 1055 1060 1065Phe Val Lys Arg Ala Pro Ser Thr Trp
Leu Thr Ala Tyr Val Val 1070 1075 1080Lys Val Phe Ser Leu Ala Val
Asn Leu Ile Ala Ile Asp Ser Gln 1085 1090 1095Val Leu Cys Gly Ala
Val Lys Trp Leu Ile Leu Glu Lys Gln Lys 1100 1105 1110Pro Asp Gly
Val Phe Gln Glu Asp Ala Pro Val Ile His Gln Glu 1115 1120 1125Met
Ile Gly Gly Leu Arg Asn Asn Asn Glu Lys Asp Met Ala Leu 1130 1135
1140Thr Ala Phe Val Leu Ile Ser Leu Gln Glu Ala Lys Asp Ile Cys
1145 1150 1155Glu Glu Gln Val Asn Ser Leu Pro Gly Ser Ile Thr Lys
Ala Gly 1160 1165 1170Asp Phe Leu Glu Ala Asn Tyr Met Asn Leu Gln
Arg Ser Tyr Thr 1175 1180 1185Val Ala Ile Ala Gly Tyr Ala Leu Ala
Gln Met Gly Arg Leu Lys 1190 1195 1200Gly Pro Leu Leu Asn Lys Phe
Leu Thr Thr Ala Lys Asp Lys Asn 1205 1210 1215Arg Trp Glu Asp Pro
Gly Lys Gln Leu Tyr Asn Val Glu Ala Thr 1220 1225 1230Ser Tyr Ala
Leu Leu Ala Leu Leu Gln Leu Lys Asp Phe Asp Phe 1235 1240 1245Val
Pro Pro Val Val Arg Trp Leu Asn Glu Gln Arg Tyr Tyr Gly 1250 1255
1260Gly Gly Tyr Gly Ser Thr Gln Ala Thr Phe Met Val Phe Gln Ala
1265 1270 1275Leu Ala Gln Tyr Gln Lys Asp Ala Pro Asp His Gln Glu
Leu Asn 1280 1285 1290Leu Asp Val Ser Leu Gln Leu Pro Ser Arg Ser
Ser Lys Ile Thr 1295 1300 1305His Arg Ile His Trp Glu Ser Ala Ser
Leu Leu Arg Ser Glu Glu 1310 1315 1320Thr Lys Glu Asn Glu Gly Phe
Thr Val Thr Ala Glu Gly Lys Gly 1325 1330 1335Gln Gly Thr Leu Ser
Val Val Thr Met Tyr His Ala Lys Ala Lys 1340 1345 1350Asp Gln Leu
Thr Cys Asn Lys Phe Asp Leu Lys Val Thr Ile Lys 1355 1360 1365Pro
Ala Pro Glu Thr Glu Lys Arg Pro Gln Asp Ala Lys Asn Thr 1370 1375
1380Met Ile Leu Glu Ile Cys Thr Arg Tyr Arg Gly Asp Gln Asp Ala
1385 1390 1395Thr Met Ser Ile Leu Asp Ile Ser Met Met Thr Gly Phe
Ala Pro 1400 1405 1410Asp Thr Asp Asp Leu Lys Gln Leu Ala Asn Gly
Val Asp Arg Tyr 1415 1420 1425Ile Ser Lys Tyr Glu Leu Asp Lys Ala
Phe Ser Asp Arg Asn Thr 1430 1435 1440Leu Ile Ile Tyr Leu Asp Lys
Val Ser His Ser Glu Asp Asp Cys 1445 1450 1455Leu Ala Phe Lys Val
His Gln Tyr Phe Asn Val Glu Leu Ile Gln 1460 1465 1470Pro Gly Ala
Val Lys Val Tyr Ala Tyr Tyr Asn Leu Glu Glu Ser 1475 1480 1485Cys
Thr Arg Phe Tyr His Pro Glu Lys Glu Asp Gly Lys Leu Asn 1490 1495
1500Lys Leu Cys Arg Asp Glu Leu Cys Arg Cys Ala Glu Glu Asn Cys
1505 1510 1515Phe Ile Gln Lys Ser Asp Asp Lys Val Thr Leu Glu Glu
Arg Leu 1520 1525 1530Asp Lys Ala Cys Glu Pro Gly Val Asp Tyr Val
Tyr Lys Thr Arg 1535 1540 1545Leu Val Lys Val Gln Leu Ser Asn Asp
Phe Asp Glu Tyr Ile Met 1550 1555 1560Ala Ile Glu Gln Thr Ile Lys
Ser Gly Ser Asp Glu Val Gln Val 1565 1570 1575Gly Gln Gln Arg Thr
Phe Ile Ser Pro Ile Lys Cys Arg Glu Ala 1580 1585 1590Leu Lys Leu
Glu Glu Lys Lys His Tyr Leu Met Trp Gly Leu Ser 1595 1600 1605Ser
Asp Phe Trp Gly Glu Lys Pro Asn Leu Ser Tyr Ile Ile Gly 1610 1615
1620Lys Asp Thr Trp Val Glu His Trp Pro Glu Glu Asp Glu Cys Gln
1625 1630 1635Asp Glu Glu Asn Gln Lys Gln Cys Gln Asp Leu Gly Ala
Phe Thr 1640 1645 1650Glu Ser Met Val Val Phe Gly Cys Pro Asn 1655
1660991744PRTHomo sapiens 99Met Arg Leu Leu Trp Gly Leu Ile Trp Ala
Ser Ser Phe Phe Thr Leu1 5 10 15Ser Leu Gln Lys Pro Arg Leu Leu Leu
Phe Ser Pro Ser Val Val His 20 25 30Leu Gly Val Pro Leu Ser Val Gly
Val Gln Leu Gln Asp Val Pro Arg 35 40 45Gly Gln Val Val Lys Gly Ser
Val Phe Leu Arg Asn Pro Ser Arg Asn 50 55 60Asn Val Pro Cys Ser Pro
Lys Val Asp Phe Thr Leu Ser Ser Glu Arg65 70 75 80Asp Phe Ala Leu
Leu Ser Leu Gln Val Pro Leu Lys Asp Ala Lys Ser 85 90 95Cys Gly Leu
His Gln Leu Leu Arg Gly Pro Glu Val Gln Leu Val Ala 100 105 110His
Ser Pro Trp Leu Lys Asp Ser Leu Ser Arg Thr Thr Asn Ile Gln 115 120
125Gly Ile Asn Leu Leu Phe Ser Ser Arg Arg Gly His Leu Phe Leu Gln
130 135 140Thr Asp Gln Pro Ile Tyr Asn Pro Gly Gln Arg Val Arg Tyr
Arg Val145 150 155 160Phe Ala Leu Asp Gln Lys Met Arg Pro Ser Thr
Asp Thr Ile Thr Val 165 170 175Met Val Glu Asn Ser His Gly Leu Arg
Val Arg Lys Lys Glu Val Tyr 180 185 190Met Pro Ser Ser Ile Phe Gln
Asp Asp Phe Val Ile Pro Asp Ile Ser 195 200 205Glu Pro Gly Thr Trp
Lys Ile Ser Ala Arg Phe Ser Asp Gly Leu Glu 210 215 220Ser Asn Ser
Ser Thr Gln Phe Glu Val Lys Lys Tyr Val Leu Pro Asn225 230 235
240Phe Glu Val Lys Ile Thr Pro Gly Lys Pro Tyr Ile Leu Thr Val Pro
245 250 255Gly His Leu Asp Glu Met Gln Leu Asp Ile Gln Ala Arg Tyr
Ile Tyr 260 265 270Gly Lys Pro Val Gln Gly Val Ala Tyr Val Arg Phe
Gly Leu Leu Asp 275 280 285Glu Asp Gly Lys Lys Thr Phe Phe Arg Gly
Leu Glu Ser Gln Thr Lys 290 295 300Leu Val Asn Gly Gln Ser His Ile
Ser Leu Ser Lys Ala Glu Phe Gln305 310 315 320Asp Ala Leu Glu Lys
Leu Asn Met Gly Ile Thr Asp Leu Gln Gly Leu 325 330 335Arg Leu Tyr
Val Ala Ala Ala Ile Ile Glu Ser Pro Gly Gly Glu Met 340 345 350Glu
Glu Ala Glu Leu Thr Ser Trp Tyr Phe Val Ser Ser Pro Phe Ser 355 360
365Leu Asp Leu Ser Lys Thr Lys Arg His Leu Val Pro Gly Ala Pro Phe
370 375 380Leu Leu Gln Ala Leu Val Arg Glu Met Ser Gly Ser Pro Ala
Ser Gly385 390 395 400Ile Pro Val Lys Val Ser Ala Thr Val Ser Ser
Pro Gly Ser Val Pro 405 410 415Glu Val Gln Asp Ile Gln Gln Asn Thr
Asp Gly Ser Gly Gln Val Ser 420 425 430Ile Pro Ile Ile Ile Pro Gln
Thr Ile Ser Glu Leu Gln Leu Ser Val 435 440 445Ser Ala Gly Ser Pro
His Pro Ala Ile Ala Arg Leu Thr Val Ala Ala 450 455 460Pro Pro Ser
Gly Gly Pro Gly Phe Leu Ser Ile Glu Arg Pro Asp Ser465 470 475
480Arg Pro Pro Arg Val Gly Asp Thr Leu Asn Leu Asn Leu Arg Ala Val
485 490 495Gly Ser Gly Ala Thr Phe Ser His Tyr Tyr Tyr Met Ile Leu
Ser Arg 500 505 510Gly Gln Ile Val Phe Met Asn Arg Glu Pro Lys Arg
Thr Leu Thr Ser 515 520 525Val Ser Val Phe Val Asp His His Leu Ala
Pro Ser Phe Tyr Phe Val 530 535 540Ala Phe Tyr Tyr His Gly Asp His
Pro Val Ala Asn Ser Leu Arg Val545 550 555 560Asp Val Gln Ala Gly
Ala Cys Glu Gly Lys Leu Glu Leu Ser Val Asp 565 570 575Gly Ala Lys
Gln Tyr Arg Asn Gly Glu Ser Val Lys Leu His Leu Glu 580 585 590Thr
Asp Ser Leu Ala Leu Val Ala Leu Gly Ala Leu Asp Thr Ala Leu 595 600
605Tyr Ala Ala Gly Ser Lys Ser His Lys Pro Leu Asn Met Gly Lys Val
610 615 620Phe Glu Ala Met Asn Ser Tyr Asp Leu Gly Cys Gly Pro Gly
Gly Gly625 630 635 640Asp Ser Ala Leu Gln Val Phe Gln Ala Ala Gly
Leu Ala Phe Ser Asp 645 650 655Gly Asp Gln Trp Thr Leu Ser Arg Lys
Arg Leu Ser Cys Pro Lys Glu 660 665 670Lys Thr Thr Arg Lys Lys Arg
Asn Val Asn Phe Gln Lys Ala Ile Asn 675 680 685Glu Lys Leu Gly Gln
Tyr Ala Ser Pro Thr Ala Lys Arg Cys Cys Gln 690 695 700Asp Gly Val
Thr Arg Leu Pro Met Met Arg Ser Cys Glu Gln Arg Ala705 710 715
720Ala Arg Val Gln Gln Pro Asp Cys Arg Glu Pro Phe Leu Ser Cys Cys
725 730 735Gln Phe Ala Glu Ser Leu Arg Lys Lys Ser Arg Asp Lys Gly
Gln Ala 740 745 750Gly Leu Gln Arg Ala Leu Glu Ile Leu Gln Glu Glu
Asp Leu Ile Asp 755 760 765Glu Asp Asp Ile Pro Val Arg Ser Phe Phe
Pro Glu Asn Trp Leu Trp 770 775 780Arg Val Glu Thr Val Asp Arg Phe
Gln Ile Leu Thr Leu Trp Leu Pro785 790 795 800Asp Ser Leu Thr Thr
Trp Glu Ile His Gly Leu Ser Leu Ser Lys Thr 805 810 815Lys Gly Leu
Cys Val Ala Thr Pro Val Gln Leu Arg Val Phe Arg Glu 820 825 830Phe
His Leu His Leu Arg Leu Pro Met Ser Val Arg Arg Phe Glu Gln 835 840
845Leu Glu Leu Arg Pro Val Leu Tyr Asn Tyr Leu Asp Lys Asn Leu Thr
850 855 860Val Ser Val His Val Ser Pro Val Glu Gly Leu Cys Leu Ala
Gly Gly865 870 875 880Gly Gly Leu Ala Gln Gln Val Leu Val Pro Ala
Gly Ser Ala Arg Pro 885 890 895Val Ala Phe Ser Val Val Pro Thr Ala
Ala Ala Ala Val Ser Leu Lys 900 905 910Val Val Ala Arg Gly Ser Phe
Glu Phe Pro Val Gly Asp Ala Val Ser 915 920 925Lys Val Leu Gln Ile
Glu Lys Glu Gly Ala Ile His Arg Glu Glu Leu 930 935 940Val Tyr Glu
Leu Asn Pro Leu Asp His Arg Gly Arg Thr Leu Glu Ile945 950 955
960Pro Gly Asn Ser Asp Pro Asn Met Ile Pro Asp Gly Asp Phe Asn Ser
965 970 975Tyr Val Arg Val Thr Ala Ser Asp Pro Leu Asp Thr Leu Gly
Ser Glu 980 985 990Gly Ala Leu Ser Pro Gly Gly Val Ala Ser Leu Leu
Arg Leu Pro Arg 995 1000 1005Gly Cys Gly Glu Gln Thr Met Ile Tyr
Leu Ala Pro Thr Leu Ala 1010 1015 1020Ala Ser Arg Tyr Leu Asp Lys
Thr Glu Gln Trp Ser Thr Leu Pro 1025 1030 1035Pro Glu Thr Lys Asp
His Ala Val Asp Leu Ile Gln Lys Gly Tyr 1040 1045 1050Met Arg Ile
Gln Gln Phe Arg Lys Ala Asp Gly Ser Tyr Ala Ala 1055 1060 1065Trp
Leu Ser Arg Asp Ser Ser Thr Trp Leu Thr Ala Phe Val Leu 1070 1075
1080Lys Val Leu Ser Leu Ala Gln Glu Gln Val Gly Gly Ser Pro Glu
1085 1090 1095Lys Leu Gln Glu Thr Ser Asn Trp Leu Leu Ser Gln Gln
Gln Ala 1100 1105 1110Asp Gly Ser Phe Gln Asp Leu Ser Pro Val Ile
His Arg Ser Met 1115 1120 1125Gln Gly Gly Leu Val Gly Asn Asp Glu
Thr Val Ala Leu Thr Ala 1130 1135 1140Phe Val Thr Ile Ala Leu His
His Gly Leu Ala Val Phe Gln Asp 1145 1150 1155Glu Gly Ala Glu Pro
Leu Lys Gln Arg Val Glu Ala Ser Ile Ser 1160 1165 1170Lys Ala Asn
Ser Phe Leu Gly Glu Lys Ala Ser Ala Gly Leu Leu 1175 1180 1185Gly
Ala His Ala Ala Ala Ile Thr Ala Tyr Ala Leu Ser Leu Thr 1190 1195
1200Lys Ala Pro Val Asp Leu Leu Gly Val Ala His Asn Asn Leu Met
1205 1210 1215Ala Met Ala Gln Glu Thr Gly Asp Asn Leu Tyr Trp Gly
Ser Val 1220 1225 1230Thr Gly Ser Gln Ser Asn Ala Val Ser Pro Thr
Pro Ala Pro Arg 1235 1240 1245Asn Pro Ser Asp Pro Met Pro Gln Ala
Pro Ala Leu Trp Ile Glu 1250 1255 1260Thr Thr Ala Tyr Ala Leu Leu
His Leu Leu Leu His Glu Gly Lys 1265 1270 1275Ala Glu Met Ala Asp
Gln Ala Ser Ala Trp Leu Thr Arg Gln Gly 1280 1285 1290Ser Phe Gln
Gly Gly Phe Arg Ser Thr Gln Asp Thr Val Ile Ala 1295 1300 1305Leu
Asp Ala Leu Ser Ala Tyr Trp Ile Ala Ser His Thr Thr Glu 1310 1315
1320Glu Arg Gly Leu Asn Val Thr Leu Ser Ser Thr Gly Arg Asn Gly
1325 1330 1335Phe Lys Ser His Ala Leu Gln Leu Asn Asn Arg Gln Ile
Arg Gly
1340 1345 1350Leu Glu Glu Glu Leu Gln Phe Ser Leu Gly Ser Lys Ile
Asn Val 1355 1360 1365Lys Val Gly Gly Asn Ser Lys Gly Thr Leu Lys
Val Leu Arg Thr 1370 1375 1380Tyr Asn Val Leu Asp Met Lys Asn Thr
Thr Cys Gln Asp Leu Gln 1385 1390 1395Ile Glu Val Thr Val Lys Gly
His Val Glu Tyr Thr Met Glu Ala 1400 1405 1410Asn Glu Asp Tyr Glu
Asp Tyr Glu Tyr Asp Glu Leu Pro Ala Lys 1415 1420 1425Asp Asp Pro
Asp Ala Pro Leu Gln Pro Val Thr Pro Leu Gln Leu 1430 1435 1440Phe
Glu Gly Arg Arg Asn Arg Arg Arg Arg Glu Ala Pro Lys Val 1445 1450
1455Val Glu Glu Gln Glu Ser Arg Val His Tyr Thr Val Cys Ile Trp
1460 1465 1470Arg Asn Gly Lys Val Gly Leu Ser Gly Met Ala Ile Ala
Asp Val 1475 1480 1485Thr Leu Leu Ser Gly Phe His Ala Leu Arg Ala
Asp Leu Glu Lys 1490 1495 1500Leu Thr Ser Leu Ser Asp Arg Tyr Val
Ser His Phe Glu Thr Glu 1505 1510 1515Gly Pro His Val Leu Leu Tyr
Phe Asp Ser Val Pro Thr Ser Arg 1520 1525 1530Glu Cys Val Gly Phe
Glu Ala Val Gln Glu Val Pro Val Gly Leu 1535 1540 1545Val Gln Pro
Ala Ser Ala Thr Leu Tyr Asp Tyr Tyr Asn Pro Glu 1550 1555 1560Arg
Arg Cys Ser Val Phe Tyr Gly Ala Pro Ser Lys Ser Arg Leu 1565 1570
1575Leu Ala Thr Leu Cys Ser Ala Glu Val Cys Gln Cys Ala Glu Gly
1580 1585 1590Lys Cys Pro Arg Gln Arg Arg Ala Leu Glu Arg Gly Leu
Gln Asp 1595 1600 1605Glu Asp Gly Tyr Arg Met Lys Phe Ala Cys Tyr
Tyr Pro Arg Val 1610 1615 1620Glu Tyr Gly Phe Gln Val Lys Val Leu
Arg Glu Asp Ser Arg Ala 1625 1630 1635Ala Phe Arg Leu Phe Glu Thr
Lys Ile Thr Gln Val Leu His Phe 1640 1645 1650Thr Lys Asp Val Lys
Ala Ala Ala Asn Gln Met Arg Asn Phe Leu 1655 1660 1665Val Arg Ala
Ser Cys Arg Leu Arg Leu Glu Pro Gly Lys Glu Tyr 1670 1675 1680Leu
Ile Met Gly Leu Asp Gly Ala Thr Tyr Asp Leu Glu Gly His 1685 1690
1695Pro Gln Tyr Leu Leu Asp Ser Asn Ser Trp Ile Glu Glu Met Pro
1700 1705 1710Ser Glu Arg Leu Cys Arg Ser Thr Arg Gln Arg Ala Ala
Cys Ala 1715 1720 1725Gln Leu Asn Asp Phe Leu Gln Glu Tyr Gly Thr
Gln Gly Cys Gln 1730 1735 1740Val100770PRTHomo sapiens 100Met Leu
Pro Gly Leu Ala Leu Leu Leu Leu Ala Ala Trp Thr Ala Arg1 5 10 15Ala
Leu Glu Val Pro Thr Asp Gly Asn Ala Gly Leu Leu Ala Glu Pro 20 25
30Gln Ile Ala Met Phe Cys Gly Arg Leu Asn Met His Met Asn Val Gln
35 40 45Asn Gly Lys Trp Asp Ser Asp Pro Ser Gly Thr Lys Thr Cys Ile
Asp 50 55 60Thr Lys Glu Gly Ile Leu Gln Tyr Cys Gln Glu Val Tyr Pro
Glu Leu65 70 75 80Gln Ile Thr Asn Val Val Glu Ala Asn Gln Pro Val
Thr Ile Gln Asn 85 90 95Trp Cys Lys Arg Gly Arg Lys Gln Cys Lys Thr
His Pro His Phe Val 100 105 110Ile Pro Tyr Arg Cys Leu Val Gly Glu
Phe Val Ser Asp Ala Leu Leu 115 120 125Val Pro Asp Lys Cys Lys Phe
Leu His Gln Glu Arg Met Asp Val Cys 130 135 140Glu Thr His Leu His
Trp His Thr Val Ala Lys Glu Thr Cys Ser Glu145 150 155 160Lys Ser
Thr Asn Leu His Asp Tyr Gly Met Leu Leu Pro Cys Gly Ile 165 170
175Asp Lys Phe Arg Gly Val Glu Phe Val Cys Cys Pro Leu Ala Glu Glu
180 185 190Ser Asp Asn Val Asp Ser Ala Asp Ala Glu Glu Asp Asp Ser
Asp Val 195 200 205Trp Trp Gly Gly Ala Asp Thr Asp Tyr Ala Asp Gly
Ser Glu Asp Lys 210 215 220Val Val Glu Val Ala Glu Glu Glu Glu Val
Ala Glu Val Glu Glu Glu225 230 235 240Glu Ala Asp Asp Asp Glu Asp
Asp Glu Asp Gly Asp Glu Val Glu Glu 245 250 255Glu Ala Glu Glu Pro
Tyr Glu Glu Ala Thr Glu Arg Thr Thr Ser Ile 260 265 270Ala Thr Thr
Thr Thr Thr Thr Thr Glu Ser Val Glu Glu Val Val Arg 275 280 285Glu
Val Cys Ser Glu Gln Ala Glu Thr Gly Pro Cys Arg Ala Met Ile 290 295
300Ser Arg Trp Tyr Phe Asp Val Thr Glu Gly Lys Cys Ala Pro Phe
Phe305 310 315 320Tyr Gly Gly Cys Gly Gly Asn Arg Asn Asn Phe Asp
Thr Glu Glu Tyr 325 330 335Cys Met Ala Val Cys Gly Ser Ala Met Ser
Gln Ser Leu Leu Lys Thr 340 345 350Thr Gln Glu Pro Leu Ala Arg Asp
Pro Val Lys Leu Pro Thr Thr Ala 355 360 365Ala Ser Thr Pro Asp Ala
Val Asp Lys Tyr Leu Glu Thr Pro Gly Asp 370 375 380Glu Asn Glu His
Ala His Phe Gln Lys Ala Lys Glu Arg Leu Glu Ala385 390 395 400Lys
His Arg Glu Arg Met Ser Gln Val Met Arg Glu Trp Glu Glu Ala 405 410
415Glu Arg Gln Ala Lys Asn Leu Pro Lys Ala Asp Lys Lys Ala Val Ile
420 425 430Gln His Phe Gln Glu Lys Val Glu Ser Leu Glu Gln Glu Ala
Ala Asn 435 440 445Glu Arg Gln Gln Leu Val Glu Thr His Met Ala Arg
Val Glu Ala Met 450 455 460Leu Asn Asp Arg Arg Arg Leu Ala Leu Glu
Asn Tyr Ile Thr Ala Leu465 470 475 480Gln Ala Val Pro Pro Arg Pro
Arg His Val Phe Asn Met Leu Lys Lys 485 490 495Tyr Val Arg Ala Glu
Gln Lys Asp Arg Gln His Thr Leu Lys His Phe 500 505 510Glu His Val
Arg Met Val Asp Pro Lys Lys Ala Ala Gln Ile Arg Ser 515 520 525Gln
Val Met Thr His Leu Arg Val Ile Tyr Glu Arg Met Asn Gln Ser 530 535
540Leu Ser Leu Leu Tyr Asn Val Pro Ala Val Ala Glu Glu Ile Gln
Asp545 550 555 560Glu Val Asp Glu Leu Leu Gln Lys Glu Gln Asn Tyr
Ser Asp Asp Val 565 570 575Leu Ala Asn Met Ile Ser Glu Pro Arg Ile
Ser Tyr Gly Asn Asp Ala 580 585 590Leu Met Pro Ser Leu Thr Glu Thr
Lys Thr Thr Val Glu Leu Leu Pro 595 600 605Val Asn Gly Glu Phe Ser
Leu Asp Asp Leu Gln Pro Trp His Ser Phe 610 615 620Gly Ala Asp Ser
Val Pro Ala Asn Thr Glu Asn Glu Val Glu Pro Val625 630 635 640Asp
Ala Arg Pro Ala Ala Asp Arg Gly Leu Thr Thr Arg Pro Gly Ser 645 650
655Gly Leu Thr Asn Ile Lys Thr Glu Glu Ile Ser Glu Val Lys Met Asp
660 665 670Ala Glu Phe Arg His Asp Ser Gly Tyr Glu Val His His Gln
Lys Leu 675 680 685Val Phe Phe Ala Glu Asp Val Gly Ser Asn Lys Gly
Ala Ile Ile Gly 690 695 700Leu Met Val Gly Gly Val Val Ile Ala Thr
Val Ile Val Ile Thr Leu705 710 715 720Val Met Leu Lys Lys Lys Gln
Tyr Thr Ser Ile His His Gly Val Val 725 730 735Glu Val Asp Ala Ala
Val Thr Pro Glu Glu Arg His Leu Ser Lys Met 740 745 750Gln Gln Asn
Gly Tyr Glu Asn Pro Thr Tyr Lys Phe Phe Glu Gln Met 755 760 765Gln
Asn 770101217PRTHomo sapiens 101Met Ala Thr Gly Ser Arg Thr Ser Leu
Leu Leu Ala Phe Gly Leu Leu1 5 10 15Cys Leu Pro Trp Leu Gln Glu Gly
Ser Ala Phe Pro Thr Ile Pro Leu 20 25 30Ser Arg Leu Phe Asp Asn Ala
Met Leu Arg Ala His Arg Leu His Gln 35 40 45Leu Ala Phe Asp Thr Tyr
Gln Glu Phe Glu Glu Ala Tyr Ile Pro Lys 50 55 60Glu Gln Lys Tyr Ser
Phe Leu Gln Asn Pro Gln Thr Ser Leu Cys Phe65 70 75 80Ser Glu Ser
Ile Pro Thr Pro Ser Asn Arg Glu Glu Thr Gln Gln Lys 85 90 95Ser Asn
Leu Glu Leu Leu Arg Ile Ser Leu Leu Leu Ile Gln Ser Trp 100 105
110Leu Glu Pro Val Gln Phe Leu Arg Ser Val Phe Ala Asn Ser Leu Val
115 120 125Tyr Gly Ala Ser Asp Ser Asn Val Tyr Asp Leu Leu Lys Asp
Leu Glu 130 135 140Glu Gly Ile Gln Thr Leu Met Gly Arg Leu Glu Asp
Gly Ser Pro Arg145 150 155 160Thr Gly Gln Ile Phe Lys Gln Thr Tyr
Ser Lys Phe Asp Thr Asn Ser 165 170 175His Asn Asp Asp Ala Leu Leu
Lys Asn Tyr Gly Leu Leu Tyr Cys Phe 180 185 190Arg Lys Asp Met Asp
Lys Val Glu Thr Phe Leu Arg Ile Val Gln Cys 195 200 205Arg Ser Val
Glu Gly Ser Cys Gly Phe 210 215102117PRTHomo sapiens 102Met Pro Ser
Pro Gly Thr Val Cys Ser Leu Leu Leu Leu Gly Met Leu1 5 10 15Trp Leu
Asp Leu Ala Met Ala Gly Ser Ser Phe Leu Ser Pro Glu His 20 25 30Gln
Arg Val Gln Gln Arg Lys Glu Ser Lys Lys Pro Pro Ala Lys Leu 35 40
45Gln Pro Arg Ala Leu Ala Gly Trp Leu Arg Pro Glu Asp Gly Gly Gln
50 55 60Ala Glu Gly Ala Glu Asp Glu Leu Glu Val Arg Phe Asn Ala Pro
Phe65 70 75 80Asp Val Gly Ile Lys Leu Ser Gly Val Gln Tyr Gln Gln
His Ser Gln 85 90 95Ala Leu Gly Lys Phe Leu Gln Asp Ile Leu Trp Glu
Glu Ala Lys Glu 100 105 110Ala Pro Ala Asp Lys 115103390PRTHomo
sapiens 103Met Pro Pro Ser Gly Leu Arg Leu Leu Leu Leu Leu Leu Pro
Leu Leu1 5 10 15Trp Leu Leu Val Leu Thr Pro Gly Arg Pro Ala Ala Gly
Leu Ser Thr 20 25 30Cys Lys Thr Ile Asp Met Glu Leu Val Lys Arg Lys
Arg Ile Glu Ala 35 40 45Ile Arg Gly Gln Ile Leu Ser Lys Leu Arg Leu
Ala Ser Pro Pro Ser 50 55 60Gln Gly Glu Val Pro Pro Gly Pro Leu Pro
Glu Ala Val Leu Ala Leu65 70 75 80Tyr Asn Ser Thr Arg Asp Arg Val
Ala Gly Glu Ser Ala Glu Pro Glu 85 90 95Pro Glu Pro Glu Ala Asp Tyr
Tyr Ala Lys Glu Val Thr Arg Val Leu 100 105 110Met Val Glu Thr His
Asn Glu Ile Tyr Asp Lys Phe Lys Gln Ser Thr 115 120 125His Ser Ile
Tyr Met Phe Phe Asn Thr Ser Glu Leu Arg Glu Ala Val 130 135 140Pro
Glu Pro Val Leu Leu Ser Arg Ala Glu Leu Arg Leu Leu Arg Leu145 150
155 160Lys Leu Lys Val Glu Gln His Val Glu Leu Tyr Gln Lys Tyr Ser
Asn 165 170 175Asn Ser Trp Arg Tyr Leu Ser Asn Arg Leu Leu Ala Pro
Ser Asp Ser 180 185 190Pro Glu Trp Leu Ser Phe Asp Val Thr Gly Val
Val Arg Gln Trp Leu 195 200 205Ser Arg Gly Gly Glu Ile Glu Gly Phe
Arg Leu Ser Ala His Cys Ser 210 215 220Cys Asp Ser Arg Asp Asn Thr
Leu Gln Val Asp Ile Asn Gly Phe Thr225 230 235 240Thr Gly Arg Arg
Gly Asp Leu Ala Thr Ile His Gly Met Asn Arg Pro 245 250 255Phe Leu
Leu Leu Met Ala Thr Pro Leu Glu Arg Ala Gln His Leu Gln 260 265
270Ser Ser Arg His Arg Arg Ala Leu Asp Thr Asn Tyr Cys Phe Ser Ser
275 280 285Thr Glu Lys Asn Cys Cys Val Arg Gln Leu Tyr Ile Asp Phe
Arg Lys 290 295 300Asp Leu Gly Trp Lys Trp Ile His Glu Pro Lys Gly
Tyr His Ala Asn305 310 315 320Phe Cys Leu Gly Pro Cys Pro Tyr Ile
Trp Ser Leu Asp Thr Gln Tyr 325 330 335Ser Lys Val Leu Ala Leu Tyr
Asn Gln His Asn Pro Gly Ala Ser Ala 340 345 350Ala Pro Cys Cys Val
Pro Gln Ala Leu Glu Pro Leu Pro Ile Val Tyr 355 360 365Tyr Val Gly
Arg Lys Pro Lys Val Glu Gln Leu Ser Asn Met Ile Val 370 375 380Arg
Ser Cys Lys Cys Ser385 39010499PRTHomo sapiens 104Met Lys Val Ser
Ala Ala Leu Leu Cys Leu Leu Leu Ile Ala Ala Thr1 5 10 15Phe Ile Pro
Gln Gly Leu Ala Gln Pro Asp Ala Ile Asn Ala Pro Val 20 25 30Thr Cys
Cys Tyr Asn Phe Thr Asn Arg Lys Ile Ser Val Gln Arg Leu 35 40 45Ala
Ser Tyr Arg Arg Ile Thr Ser Ser Lys Cys Pro Lys Glu Ala Val 50 55
60Ile Phe Lys Thr Ile Val Ala Lys Glu Ile Cys Ala Asp Pro Lys Gln65
70 75 80Lys Trp Val Gln Asp Ser Met Asp His Leu Asp Lys Gln Thr Gln
Thr 85 90 95Pro Lys Thr105798PRTHomo sapiens 105Met Asn Leu Gln Pro
Ile Phe Trp Ile Gly Leu Ile Ser Ser Val Cys1 5 10 15Cys Val Phe Ala
Gln Thr Asp Glu Asn Arg Cys Leu Lys Ala Asn Ala 20 25 30Lys Ser Cys
Gly Glu Cys Ile Gln Ala Gly Pro Asn Cys Gly Trp Cys 35 40 45Thr Asn
Ser Thr Phe Leu Gln Glu Gly Met Pro Thr Ser Ala Arg Cys 50 55 60Asp
Asp Leu Glu Ala Leu Lys Lys Lys Gly Cys Pro Pro Asp Asp Ile65 70 75
80Glu Asn Pro Arg Gly Ser Lys Asp Ile Lys Lys Asn Lys Asn Val Thr
85 90 95Asn Arg Ser Lys Gly Thr Ala Glu Lys Leu Lys Pro Glu Asp Ile
Thr 100 105 110Gln Ile Gln Pro Gln Gln Leu Val Leu Arg Leu Arg Ser
Gly Glu Pro 115 120 125Gln Thr Phe Thr Leu Lys Phe Lys Arg Ala Glu
Asp Tyr Pro Ile Asp 130 135 140Leu Tyr Tyr Leu Met Asp Leu Ser Tyr
Ser Met Lys Asp Asp Leu Glu145 150 155 160Asn Val Lys Ser Leu Gly
Thr Asp Leu Met Asn Glu Met Arg Arg Ile 165 170 175Thr Ser Asp Phe
Arg Ile Gly Phe Gly Ser Phe Val Glu Lys Thr Val 180 185 190Met Pro
Tyr Ile Ser Thr Thr Pro Ala Lys Leu Arg Asn Pro Cys Thr 195 200
205Ser Glu Gln Asn Cys Thr Ser Pro Phe Ser Tyr Lys Asn Val Leu Ser
210 215 220Leu Thr Asn Lys Gly Glu Val Phe Asn Glu Leu Val Gly Lys
Gln Arg225 230 235 240Ile Ser Gly Asn Leu Asp Ser Pro Glu Gly Gly
Phe Asp Ala Ile Met 245 250 255Gln Val Ala Val Cys Gly Ser Leu Ile
Gly Trp Arg Asn Val Thr Arg 260 265 270Leu Leu Val Phe Ser Thr Asp
Ala Gly Phe His Phe Ala Gly Asp Gly 275 280 285Lys Leu Gly Gly Ile
Val Leu Pro Asn Asp Gly Gln Cys His Leu Glu 290 295 300Asn Asn Met
Tyr Thr Met Ser His Tyr Tyr Asp Tyr Pro Ser Ile Ala305 310 315
320His Leu Val Gln Lys Leu Ser Glu Asn Asn Ile Gln Thr Ile Phe Ala
325 330 335Val Thr Glu Glu Phe Gln Pro Val Tyr Lys Glu Leu Lys Asn
Leu Ile 340 345 350Pro Lys Ser Ala Val Gly Thr Leu Ser Ala Asn Ser
Ser Asn Val Ile 355 360 365Gln Leu Ile Ile Asp Ala Tyr Asn Ser Leu
Ser Ser Glu Val Ile Leu 370 375 380Glu Asn Gly Lys Leu Ser Glu Gly
Val Thr Ile Ser Tyr Lys Ser Tyr385 390 395 400Cys Lys Asn Gly Val
Asn Gly Thr Gly Glu Asn Gly Arg Lys Cys Ser 405 410 415Asn Ile Ser
Ile Gly Asp Glu Val Gln Phe Glu Ile Ser Ile Thr Ser 420 425 430Asn
Lys Cys Pro Lys Lys Asp Ser Asp Ser Phe Lys Ile Arg Pro Leu 435 440
445Gly Phe Thr Glu Glu Val Glu Val Ile Leu Gln Tyr Ile Cys Glu Cys
450 455 460Glu Cys Gln Ser Glu Gly Ile Pro Glu Ser Pro
Lys Cys His Glu Gly465 470 475 480Asn Gly Thr Phe Glu Cys Gly Ala
Cys Arg Cys Asn Glu Gly Arg Val 485 490 495Gly Arg His Cys Glu Cys
Ser Thr Asp Glu Val Asn Ser Glu Asp Met 500 505 510Asp Ala Tyr Cys
Arg Lys Glu Asn Ser Ser Glu Ile Cys Ser Asn Asn 515 520 525Gly Glu
Cys Val Cys Gly Gln Cys Val Cys Arg Lys Arg Asp Asn Thr 530 535
540Asn Glu Ile Tyr Ser Gly Lys Phe Cys Glu Cys Asp Asn Phe Asn
Cys545 550 555 560Asp Arg Ser Asn Gly Leu Ile Cys Gly Gly Asn Gly
Val Cys Lys Cys 565 570 575Arg Val Cys Glu Cys Asn Pro Asn Tyr Thr
Gly Ser Ala Cys Asp Cys 580 585 590Ser Leu Asp Thr Ser Thr Cys Glu
Ala Ser Asn Gly Gln Ile Cys Asn 595 600 605Gly Arg Gly Ile Cys Glu
Cys Gly Val Cys Lys Cys Thr Asp Pro Lys 610 615 620Phe Gln Gly Gln
Thr Cys Glu Met Cys Gln Thr Cys Leu Gly Val Cys625 630 635 640Ala
Glu His Lys Glu Cys Val Gln Cys Arg Ala Phe Asn Lys Gly Glu 645 650
655Lys Lys Asp Thr Cys Thr Gln Glu Cys Ser Tyr Phe Asn Ile Thr Lys
660 665 670Val Glu Ser Arg Asp Lys Leu Pro Gln Pro Val Gln Pro Asp
Pro Val 675 680 685Ser His Cys Lys Glu Lys Asp Val Asp Asp Cys Trp
Phe Tyr Phe Thr 690 695 700Tyr Ser Val Asn Gly Asn Asn Glu Val Met
Val His Val Val Glu Asn705 710 715 720Pro Glu Cys Pro Thr Gly Pro
Asp Ile Ile Pro Ile Val Ala Gly Val 725 730 735Val Ala Gly Ile Val
Leu Ile Gly Leu Ala Leu Leu Leu Ile Trp Lys 740 745 750Leu Leu Met
Ile Ile His Asp Arg Arg Glu Phe Ala Lys Phe Glu Lys 755 760 765Glu
Lys Met Asn Ala Lys Trp Asp Thr Gly Glu Asn Pro Ile Tyr Lys 770 775
780Ser Ala Val Thr Thr Val Val Asn Pro Lys Tyr Glu Gly Lys785 790
795106156PRTHomo sapiens 106Met Tyr Arg Met Gln Leu Leu Ser Cys Ile
Ala Leu Ile Leu Ala Leu1 5 10 15Val Thr Asn Ser Ala Pro Thr Ser Ser
Ser Thr Lys Lys Thr Lys Lys 20 25 30Thr Gln Leu Gln Leu Glu His Leu
Leu Leu Asp Leu Gln Met Ile Leu 35 40 45Asn Gly Ile Asn Asn Tyr Lys
Asn Pro Lys Leu Thr Arg Met Leu Thr 50 55 60Phe Lys Phe Tyr Met Pro
Lys Lys Ala Thr Glu Leu Lys Gln Leu Gln65 70 75 80Cys Leu Glu Glu
Glu Leu Lys Pro Leu Glu Glu Val Leu Asn Leu Ala 85 90 95Gln Ser Lys
Asn Phe His Leu Arg Pro Arg Asp Leu Ile Ser Asn Ile 100 105 110Asn
Val Ile Val Leu Glu Leu Lys Gly Ser Glu Thr Thr Phe Met Cys 115 120
125Glu Tyr Ala Asp Glu Thr Ala Thr Ile Val Glu Phe Leu Asn Arg Trp
130 135 140Ile Thr Phe Cys Gln Ser Ile Ile Ser Thr Leu Thr145 150
155107986PRTHomo sapiens 107Met Pro Gly Val Ala Arg Leu Pro Leu Leu
Leu Gly Leu Leu Leu Leu1 5 10 15Pro Arg Pro Gly Arg Pro Leu Asp Leu
Ala Asp Tyr Thr Tyr Asp Leu 20 25 30Ala Glu Glu Asp Asp Ser Glu Pro
Leu Asn Tyr Lys Asp Pro Cys Lys 35 40 45Ala Ala Ala Phe Leu Gly Asp
Ile Ala Leu Asp Glu Glu Asp Leu Arg 50 55 60Ala Phe Gln Val Gln Gln
Ala Val Asp Leu Arg Arg His Thr Ala Arg65 70 75 80Lys Ser Ser Ile
Lys Ala Ala Val Pro Gly Asn Thr Ser Thr Pro Ser 85 90 95Cys Gln Ser
Thr Asn Gly Gln Pro Gln Arg Gly Ala Cys Gly Arg Trp 100 105 110Arg
Gly Arg Ser Arg Ser Arg Arg Ala Ala Thr Ser Arg Pro Glu Arg 115 120
125Val Trp Pro Asp Gly Val Ile Pro Phe Val Ile Gly Gly Asn Phe Thr
130 135 140Gly Ser Gln Arg Ala Val Phe Arg Gln Ala Met Arg His Trp
Glu Lys145 150 155 160His Thr Cys Val Thr Phe Leu Glu Arg Thr Asp
Glu Asp Ser Tyr Ile 165 170 175Val Phe Thr Tyr Arg Pro Cys Gly Cys
Cys Ser Tyr Val Gly Arg Arg 180 185 190Gly Gly Gly Pro Gln Ala Ile
Ser Ile Gly Lys Asn Cys Asp Lys Phe 195 200 205Gly Ile Val Val His
Glu Leu Gly His Val Val Gly Phe Trp His Glu 210 215 220His Thr Arg
Pro Asp Arg Asp Arg His Val Ser Ile Val Arg Glu Asn225 230 235
240Ile Gln Pro Gly Gln Glu Tyr Asn Phe Leu Lys Met Glu Pro Gln Glu
245 250 255Val Glu Ser Leu Gly Glu Thr Tyr Asp Phe Asp Ser Ile Met
His Tyr 260 265 270Ala Arg Asn Thr Phe Ser Arg Gly Ile Phe Leu Asp
Thr Ile Val Pro 275 280 285Lys Tyr Glu Val Asn Gly Val Lys Pro Pro
Ile Gly Gln Arg Thr Arg 290 295 300Leu Ser Lys Gly Asp Ile Ala Gln
Ala Arg Lys Leu Tyr Lys Cys Pro305 310 315 320Ala Cys Gly Glu Thr
Leu Gln Asp Ser Thr Gly Asn Phe Ser Ser Pro 325 330 335Glu Tyr Pro
Asn Gly Tyr Ser Ala His Met His Cys Val Trp Arg Ile 340 345 350Ser
Val Thr Pro Gly Glu Lys Ile Ile Leu Asn Phe Thr Ser Leu Asp 355 360
365Leu Tyr Arg Ser Arg Leu Cys Trp Tyr Asp Tyr Val Glu Val Arg Asp
370 375 380Gly Phe Trp Arg Lys Ala Pro Leu Arg Gly Arg Phe Cys Gly
Ser Lys385 390 395 400Leu Pro Glu Pro Ile Val Ser Thr Asp Ser Arg
Leu Trp Val Glu Phe 405 410 415Arg Ser Ser Ser Asn Trp Val Gly Lys
Gly Phe Phe Ala Val Tyr Glu 420 425 430Ala Ile Cys Gly Gly Asp Val
Lys Lys Asp Tyr Gly His Ile Gln Ser 435 440 445Pro Asn Tyr Pro Asp
Asp Tyr Arg Pro Ser Lys Val Cys Ile Trp Arg 450 455 460Ile Gln Val
Ser Glu Gly Phe His Val Gly Leu Thr Phe Gln Ser Phe465 470 475
480Glu Ile Glu Arg His Asp Ser Cys Ala Tyr Asp Tyr Leu Glu Val Arg
485 490 495Asp Gly His Ser Glu Ser Ser Thr Leu Ile Gly Arg Tyr Cys
Gly Tyr 500 505 510Glu Lys Pro Asp Asp Ile Lys Ser Thr Ser Ser Arg
Leu Trp Leu Lys 515 520 525Phe Val Ser Asp Gly Ser Ile Asn Lys Ala
Gly Phe Ala Val Asn Phe 530 535 540Phe Lys Glu Val Asp Glu Cys Ser
Arg Pro Asn Arg Gly Gly Cys Glu545 550 555 560Gln Arg Cys Leu Asn
Thr Leu Gly Ser Tyr Lys Cys Ser Cys Asp Pro 565 570 575Gly Tyr Glu
Leu Ala Pro Asp Lys Arg Arg Cys Glu Ala Ala Cys Gly 580 585 590Gly
Phe Leu Thr Lys Leu Asn Gly Ser Ile Thr Ser Pro Gly Trp Pro 595 600
605Lys Glu Tyr Pro Pro Asn Lys Asn Cys Ile Trp Gln Leu Val Ala Pro
610 615 620Thr Gln Tyr Arg Ile Ser Leu Gln Phe Asp Phe Phe Glu Thr
Glu Gly625 630 635 640Asn Asp Val Cys Lys Tyr Asp Phe Val Glu Val
Arg Ser Gly Leu Thr 645 650 655Ala Asp Ser Lys Leu His Gly Lys Phe
Cys Gly Ser Glu Lys Pro Glu 660 665 670Val Ile Thr Ser Gln Tyr Asn
Asn Met Arg Val Glu Phe Lys Ser Asp 675 680 685Asn Thr Val Ser Lys
Lys Gly Phe Lys Ala His Phe Phe Ser Asp Lys 690 695 700Asp Glu Cys
Ser Lys Asp Asn Gly Gly Cys Gln Gln Asp Cys Val Asn705 710 715
720Thr Phe Gly Ser Tyr Glu Cys Gln Cys Arg Ser Gly Phe Val Leu His
725 730 735Asp Asn Lys His Asp Cys Lys Glu Ala Gly Cys Asp His Lys
Val Thr 740 745 750Ser Thr Ser Gly Thr Ile Thr Ser Pro Asn Trp Pro
Asp Lys Tyr Pro 755 760 765Ser Lys Lys Glu Cys Thr Trp Ala Ile Ser
Ser Thr Pro Gly His Arg 770 775 780Val Lys Leu Thr Phe Met Glu Met
Asp Ile Glu Ser Gln Pro Glu Cys785 790 795 800Ala Tyr Asp His Leu
Glu Val Phe Asp Gly Arg Asp Ala Lys Ala Pro 805 810 815Val Leu Gly
Arg Phe Cys Gly Ser Lys Lys Pro Glu Pro Val Leu Ala 820 825 830Thr
Gly Ser Arg Met Phe Leu Arg Phe Tyr Ser Asp Asn Ser Val Gln 835 840
845Arg Lys Gly Phe Gln Ala Ser His Ala Thr Glu Cys Gly Gly Gln Val
850 855 860Arg Ala Asp Val Lys Thr Lys Asp Leu Tyr Ser His Ala Gln
Phe Gly865 870 875 880Asp Asn Asn Tyr Pro Gly Gly Val Asp Cys Glu
Trp Val Ile Val Ala 885 890 895Glu Glu Gly Tyr Gly Val Glu Leu Val
Phe Gln Thr Phe Glu Val Glu 900 905 910Glu Glu Thr Asp Cys Gly Tyr
Asp Tyr Met Glu Leu Phe Asp Gly Tyr 915 920 925Asp Ser Thr Ala Pro
Arg Leu Gly Arg Tyr Cys Gly Ser Gly Pro Pro 930 935 940Glu Glu Val
Tyr Ser Ala Gly Asp Ser Val Leu Val Lys Phe His Ser945 950 955
960Asp Asp Thr Ile Thr Lys Lys Gly Phe His Leu Arg Tyr Thr Ser Thr
965 970 975Lys Phe Gln Asp Thr Leu His Ser Arg Lys 980
985108148PRTHomo sapiens 108Met Arg Gly Ser Glu Leu Pro Leu Val Leu
Leu Ala Leu Val Leu Cys1 5 10 15Leu Ala Pro Arg Gly Arg Ala Val Pro
Leu Pro Ala Gly Gly Gly Thr 20 25 30Val Leu Thr Lys Met Tyr Pro Arg
Gly Asn His Trp Ala Val Gly His 35 40 45Leu Met Gly Lys Lys Ser Thr
Gly Glu Ser Ser Ser Val Ser Glu Arg 50 55 60Gly Ser Leu Lys Gln Gln
Leu Arg Glu Tyr Ile Arg Trp Glu Glu Ala65 70 75 80Ala Arg Asn Leu
Leu Gly Leu Ile Glu Ala Lys Glu Asn Arg Asn His 85 90 95Gln Pro Pro
Gln Pro Lys Ala Leu Gly Asn Gln Gln Pro Ser Trp Asp 100 105 110Ser
Glu Asp Ser Ser Asn Phe Lys Asp Val Gly Ser Lys Gly Lys Val 115 120
125Gly Arg Leu Ser Ala Pro Gly Ser Gln Arg Glu Gly Arg Asn Pro Gln
130 135 140Leu Asn Gln Gln145109170PRTHomo sapiens 109Met Asp Thr
Arg Asn Lys Ala Gln Leu Leu Val Leu Leu Thr Leu Leu1 5 10 15Ser Val
Leu Phe Ser Gln Thr Ser Ala Trp Pro Leu Tyr Arg Ala Pro 20 25 30Ser
Ala Leu Arg Leu Gly Asp Arg Ile Pro Phe Glu Gly Ala Asn Glu 35 40
45Pro Asp Gln Val Ser Leu Lys Glu Asp Ile Asp Met Leu Gln Asn Ala
50 55 60Leu Ala Glu Asn Asp Thr Pro Tyr Tyr Asp Val Ser Arg Asn Ala
Arg65 70 75 80His Ala Asp Gly Val Phe Thr Ser Asp Phe Ser Lys Leu
Leu Gly Gln 85 90 95Leu Ser Ala Lys Lys Tyr Leu Glu Ser Leu Met Gly
Lys Arg Val Ser 100 105 110Ser Asn Ile Ser Glu Asp Pro Val Pro Val
Lys Arg His Ser Asp Ala 115 120 125Val Phe Thr Asp Asn Tyr Thr Arg
Leu Arg Lys Gln Met Ala Val Lys 130 135 140Lys Tyr Leu Asn Ser Ile
Leu Asn Gly Lys Arg Ser Ser Glu Gly Glu145 150 155 160Ser Pro Asp
Phe Pro Glu Glu Leu Glu Lys 165 170110110PRTHomo sapiens 110Met Ala
Leu Trp Met Arg Leu Leu Pro Leu Leu Ala Leu Leu Ala Leu1 5 10 15Trp
Gly Pro Asp Pro Ala Ala Ala Phe Val Asn Gln His Leu Cys Gly 20 25
30Ser His Leu Val Glu Ala Leu Tyr Leu Val Cys Gly Glu Arg Gly Phe
35 40 45Phe Tyr Thr Pro Lys Thr Arg Arg Glu Ala Glu Asp Leu Gln Val
Gly 50 55 60Gln Val Glu Leu Gly Gly Gly Pro Gly Ala Gly Ser Leu Gln
Pro Leu65 70 75 80Ala Leu Glu Gly Ser Leu Gln Lys Arg Gly Ile Val
Glu Gln Cys Cys 85 90 95Thr Ser Ile Cys Ser Leu Tyr Gln Leu Glu Asn
Tyr Cys Asn 100 105 110111153PRTHomo sapiens 111Met Gly Lys Ile Ser
Ser Leu Pro Thr Gln Leu Phe Lys Cys Cys Phe1 5 10 15Cys Asp Phe Leu
Lys Val Lys Met His Thr Met Ser Ser Ser His Leu 20 25 30Phe Tyr Leu
Ala Leu Cys Leu Leu Thr Phe Thr Ser Ser Ala Thr Ala 35 40 45Gly Pro
Glu Thr Leu Cys Gly Ala Glu Leu Val Asp Ala Leu Gln Phe 50 55 60Val
Cys Gly Asp Arg Gly Phe Tyr Phe Asn Lys Pro Thr Gly Tyr Gly65 70 75
80Ser Ser Ser Arg Arg Ala Pro Gln Thr Gly Ile Val Asp Glu Cys Cys
85 90 95Phe Arg Ser Cys Asp Leu Arg Arg Leu Glu Met Tyr Cys Ala Pro
Leu 100 105 110Lys Pro Ala Lys Ser Ala Arg Ser Val Arg Ala Gln Arg
His Thr Asp 115 120 125Met Pro Lys Thr Gln Lys Glu Val His Leu Lys
Asn Ala Ser Arg Gly 130 135 140Ser Ala Gly Asn Lys Asn Tyr Arg
Met145 150112195PRTHomo sapiens 112Met Gly Lys Ile Ser Ser Leu Pro
Thr Gln Leu Phe Lys Cys Cys Phe1 5 10 15Cys Asp Phe Leu Lys Val Lys
Met His Thr Met Ser Ser Ser His Leu 20 25 30Phe Tyr Leu Ala Leu Cys
Leu Leu Thr Phe Thr Ser Ser Ala Thr Ala 35 40 45Gly Pro Glu Thr Leu
Cys Gly Ala Glu Leu Val Asp Ala Leu Gln Phe 50 55 60Val Cys Gly Asp
Arg Gly Phe Tyr Phe Asn Lys Pro Thr Gly Tyr Gly65 70 75 80Ser Ser
Ser Arg Arg Ala Pro Gln Thr Gly Ile Val Asp Glu Cys Cys 85 90 95Phe
Arg Ser Cys Asp Leu Arg Arg Leu Glu Met Tyr Cys Ala Pro Leu 100 105
110Lys Pro Ala Lys Ser Ala Arg Ser Val Arg Ala Gln Arg His Thr Asp
115 120 125Met Pro Lys Thr Gln Lys Tyr Gln Pro Pro Ser Thr Asn Lys
Asn Thr 130 135 140Lys Ser Gln Arg Arg Lys Gly Trp Pro Lys Thr His
Pro Gly Gly Glu145 150 155 160Gln Lys Glu Gly Thr Glu Ala Ser Leu
Gln Ile Arg Gly Lys Lys Lys 165 170 175Glu Gln Arg Arg Glu Ile Gly
Ser Arg Asn Ala Glu Cys Arg Gly Lys 180 185 190Lys Gly Lys
195113141PRTHomo sapiens 113Met Gly Phe Gln Lys Phe Ser Pro Phe Leu
Ala Leu Ser Ile Leu Val1 5 10 15Leu Leu Gln Ala Gly Ser Leu His Ala
Ala Pro Phe Arg Ser Ala Leu 20 25 30Glu Ser Ser Pro Ala Asp Pro Ala
Thr Leu Ser Glu Asp Glu Ala Arg 35 40 45Leu Leu Leu Ala Ala Leu Val
Gln Asp Tyr Val Gln Met Lys Ala Ser 50 55 60Glu Leu Glu Gln Glu Gln
Glu Arg Glu Gly Ser Ser Leu Asp Ser Pro65 70 75 80Arg Ser Lys Arg
Cys Gly Asn Leu Ser Thr Cys Met Leu Gly Thr Tyr 85 90 95Thr Gln Asp
Phe Asn Lys Phe His Thr Phe Pro Gln Thr Ala Ile Gly 100 105 110Val
Gly Ala Pro Gly Lys Lys Arg Asp Met Ser Ser Asp Leu Glu Arg 115 120
125Asp His Arg Pro His Val Ser Met Pro Gln Asn Ala Asn 130 135
140114554PRTHomo sapiens 114Met Thr Ala Pro Gly Ala Ala Gly Arg Cys
Pro Pro Thr Thr Trp Leu1 5 10 15Gly Ser Leu Leu Leu Leu Val Cys Leu
Leu Ala Ser Arg Ser Ile Thr 20 25 30Glu Glu Val Ser Glu Tyr Cys Ser
His Met Ile Gly Ser Gly His Leu 35 40 45Gln Ser Leu Gln Arg Leu Ile
Asp Ser Gln Met Glu Thr Ser Cys Gln 50 55 60Ile Thr Phe Glu Phe
Val
Asp Gln Glu Gln Leu Lys Asp Pro Val Cys65 70 75 80Tyr Leu Lys Lys
Ala Phe Leu Leu Val Gln Asp Ile Met Glu Asp Thr 85 90 95Met Arg Phe
Arg Asp Asn Thr Pro Asn Ala Ile Ala Ile Val Gln Leu 100 105 110Gln
Glu Leu Ser Leu Arg Leu Lys Ser Cys Phe Thr Lys Asp Tyr Glu 115 120
125Glu His Asp Lys Ala Cys Val Arg Thr Phe Tyr Glu Thr Pro Leu Gln
130 135 140Leu Leu Glu Lys Val Lys Asn Val Phe Asn Glu Thr Lys Asn
Leu Leu145 150 155 160Asp Lys Asp Trp Asn Ile Phe Ser Lys Asn Cys
Asn Asn Ser Phe Ala 165 170 175Glu Cys Ser Ser Gln Asp Val Val Thr
Lys Pro Asp Cys Asn Cys Leu 180 185 190Tyr Pro Lys Ala Ile Pro Ser
Ser Asp Pro Ala Ser Val Ser Pro His 195 200 205Gln Pro Leu Ala Pro
Ser Met Ala Pro Val Ala Gly Leu Thr Trp Glu 210 215 220Asp Ser Glu
Gly Thr Glu Gly Ser Ser Leu Leu Pro Gly Glu Gln Pro225 230 235
240Leu His Thr Val Asp Pro Gly Ser Ala Lys Gln Arg Pro Pro Arg Ser
245 250 255Thr Cys Gln Ser Phe Glu Pro Pro Glu Thr Pro Val Val Lys
Asp Ser 260 265 270Thr Ile Gly Gly Ser Pro Gln Pro Arg Pro Ser Val
Gly Ala Phe Asn 275 280 285Pro Gly Met Glu Asp Ile Leu Asp Ser Ala
Met Gly Thr Asn Trp Val 290 295 300Pro Glu Glu Ala Ser Gly Glu Ala
Ser Glu Ile Pro Val Pro Gln Gly305 310 315 320Thr Glu Leu Ser Pro
Ser Arg Pro Gly Gly Gly Ser Met Gln Thr Glu 325 330 335Pro Ala Arg
Pro Ser Asn Phe Leu Ser Ala Ser Ser Pro Leu Pro Ala 340 345 350Ser
Ala Lys Gly Gln Gln Pro Ala Asp Val Thr Gly Thr Ala Leu Pro 355 360
365Arg Val Gly Pro Val Arg Pro Thr Gly Gln Asp Trp Asn His Thr Pro
370 375 380Gln Lys Thr Asp His Pro Ser Ala Leu Leu Arg Asp Pro Pro
Glu Pro385 390 395 400Gly Ser Pro Arg Ile Ser Ser Leu Arg Pro Gln
Gly Leu Ser Asn Pro 405 410 415Ser Thr Leu Ser Ala Gln Pro Gln Leu
Ser Arg Ser His Ser Ser Gly 420 425 430Ser Val Leu Pro Leu Gly Glu
Leu Glu Gly Arg Arg Ser Thr Arg Asp 435 440 445Arg Arg Ser Pro Ala
Glu Pro Glu Gly Gly Pro Ala Ser Glu Gly Ala 450 455 460Ala Arg Pro
Leu Pro Arg Phe Asn Ser Val Pro Leu Thr Asp Thr Gly465 470 475
480His Glu Arg Gln Ser Glu Gly Ser Ser Ser Pro Gln Leu Gln Glu Ser
485 490 495Val Phe His Leu Leu Val Pro Ser Val Ile Leu Val Leu Leu
Ala Val 500 505 510Gly Gly Leu Leu Phe Tyr Arg Trp Arg Arg Arg Ser
His Gln Glu Pro 515 520 525Gln Arg Ala Asp Ser Pro Leu Glu Gln Pro
Glu Gly Ser Pro Leu Thr 530 535 540Gln Asp Asp Arg Gln Val Glu Leu
Pro Val545 55011520PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 115Gly Thr Phe Val Tyr Gly Gly Cys Arg
Ala Lys Arg Asn Asn Phe Lys1 5 10 15Ser Ala Glu Asp
2011620PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 116Gly Pro Phe Phe Tyr Gly Gly Cys Gly Gly Asn
Arg Asn Asn Phe Asp1 5 10 15Thr Glu Glu Tyr 2011720PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 117Gly
Thr Phe Phe Tyr Gly Gly Cys Arg Gly Lys Arg Asn Asn Phe Lys1 5 10
15Thr Glu Glu Tyr 2011820PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 118Gly Thr Phe Phe Tyr Gly
Gly Ser Arg Gly Lys Arg Asn Asn Phe Lys1 5 10 15Thr Glu Glu Tyr
2011920PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 119Gly Arg Phe Phe Tyr Gly Gly Ser Arg Gly Lys
Arg Asn Asn Phe Arg1 5 10 15Thr Glu Glu Tyr 2012020PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 120Gly
Thr Phe Phe Tyr Gly Gly Ser Arg Gly Arg Arg Asn Asn Phe Arg1 5 10
15Thr Glu Glu Tyr 2012120PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 121Cys Thr Phe Val Tyr Gly
Gly Cys Arg Ala Lys Arg Asn Asn Phe Lys1 5 10 15Ser Ala Glu Asp
2012220PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 122Cys Pro Phe Phe Tyr Gly Gly Cys Gly Gly Asn
Arg Asn Asn Phe Asp1 5 10 15Thr Glu Glu Tyr 2012320PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 123Cys
Thr Phe Phe Tyr Gly Gly Cys Arg Gly Lys Arg Asn Asn Phe Lys1 5 10
15Thr Glu Glu Tyr 2012420PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 124Cys Thr Phe Phe Tyr Gly
Gly Ser Arg Gly Lys Arg Asn Asn Phe Lys1 5 10 15Thr Glu Glu Tyr
2012520PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 125Cys Arg Phe Phe Tyr Gly Gly Ser Arg Gly Lys
Arg Asn Asn Phe Arg1 5 10 15Thr Glu Glu Tyr 2012620PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 126Cys
Thr Phe Phe Tyr Gly Gly Ser Arg Gly Arg Arg Asn Asn Phe Arg1 5 10
15Thr Glu Glu Tyr 2012720PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 127Thr Phe Val Tyr Gly Gly
Cys Arg Ala Lys Arg Asn Asn Phe Lys Ser1 5 10 15Ala Glu Asp Gly
2012820PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 128Pro Phe Phe Tyr Gly Gly Cys Gly Gly Asn Arg
Asn Asn Phe Asp Thr1 5 10 15Glu Glu Tyr Gly 2012920PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 129Thr
Phe Phe Tyr Gly Gly Cys Arg Gly Lys Arg Asn Asn Phe Lys Thr1 5 10
15Glu Glu Tyr Gly 2013020PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 130Thr Phe Phe Tyr Gly Gly
Ser Arg Gly Lys Arg Asn Asn Phe Lys Thr1 5 10 15Glu Glu Tyr Gly
2013120PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 131Arg Phe Phe Tyr Gly Gly Ser Arg Gly Lys Arg
Asn Asn Phe Arg Thr1 5 10 15Glu Glu Tyr Gly 2013220PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 132Thr
Phe Phe Tyr Gly Gly Ser Arg Gly Arg Arg Asn Asn Phe Arg Thr1 5 10
15Glu Glu Tyr Gly 2013320PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 133Thr Phe Val Tyr Gly Gly
Cys Arg Ala Lys Arg Asn Asn Phe Lys Ser1 5 10 15Ala Glu Asp Cys
2013420PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 134Pro Phe Phe Tyr Gly Gly Cys Gly Gly Asn Arg
Asn Asn Phe Asp Thr1 5 10 15Glu Glu Tyr Cys 2013520PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 135Thr
Phe Phe Tyr Gly Gly Cys Arg Gly Lys Arg Asn Asn Phe Lys Thr1 5 10
15Glu Glu Tyr Cys 2013620PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 136Thr Phe Phe Tyr Gly Gly
Ser Arg Gly Lys Arg Asn Asn Phe Lys Thr1 5 10 15Glu Glu Tyr Cys
2013720PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 137Arg Phe Phe Tyr Gly Gly Ser Arg Gly Lys Arg
Asn Asn Phe Arg Thr1 5 10 15Glu Glu Tyr Cys 2013820PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 138Thr
Phe Phe Tyr Gly Gly Ser Arg Gly Arg Arg Asn Asn Phe Arg Thr1 5 10
15Glu Glu Tyr Cys 201391296PRTClostridium botulinum 139Met Pro Phe
Val Asn Lys Gln Phe Asn Tyr Lys Asp Pro Val Asn Gly1 5 10 15Val Asp
Ile Ala Tyr Ile Lys Ile Pro Asn Val Gly Gln Met Gln Pro 20 25 30Val
Lys Ala Phe Lys Ile His Asn Lys Ile Trp Val Ile Pro Glu Arg 35 40
45Asp Thr Phe Thr Asn Pro Glu Glu Gly Asp Leu Asn Pro Pro Pro Glu
50 55 60Ala Lys Gln Val Pro Val Ser Tyr Tyr Asp Ser Thr Tyr Leu Ser
Thr65 70 75 80Asp Asn Glu Lys Asp Asn Tyr Leu Lys Gly Val Thr Lys
Leu Phe Glu 85 90 95Arg Ile Tyr Ser Thr Asp Leu Gly Arg Met Leu Leu
Thr Ser Ile Val 100 105 110Arg Gly Ile Pro Phe Trp Gly Gly Ser Thr
Ile Asp Thr Glu Leu Lys 115 120 125Val Ile Asp Thr Asn Cys Ile Asn
Val Ile Gln Pro Asp Gly Ser Tyr 130 135 140Arg Ser Glu Glu Leu Asn
Leu Val Ile Ile Gly Pro Ser Ala Asp Ile145 150 155 160Ile Gln Phe
Glu Cys Lys Ser Phe Gly His Glu Val Leu Asn Leu Thr 165 170 175Arg
Asn Gly Tyr Gly Ser Thr Gln Tyr Ile Arg Phe Ser Pro Asp Phe 180 185
190Thr Phe Gly Phe Glu Glu Ser Leu Glu Val Asp Thr Asn Pro Leu Leu
195 200 205Gly Ala Gly Lys Phe Ala Thr Asp Pro Ala Val Thr Leu Ala
His Glu 210 215 220Leu Ile His Ala Gly His Arg Leu Tyr Gly Ile Ala
Ile Asn Pro Asn225 230 235 240Arg Val Phe Lys Val Asn Thr Asn Ala
Tyr Tyr Glu Met Ser Gly Leu 245 250 255Glu Val Ser Phe Glu Glu Leu
Arg Thr Phe Gly Gly His Asp Ala Lys 260 265 270Phe Ile Asp Ser Leu
Gln Glu Asn Glu Phe Arg Leu Tyr Tyr Tyr Asn 275 280 285Lys Phe Lys
Asp Ile Ala Ser Thr Leu Asn Lys Ala Lys Ser Ile Val 290 295 300Gly
Thr Thr Ala Ser Leu Gln Tyr Met Lys Asn Val Phe Lys Glu Lys305 310
315 320Tyr Leu Leu Ser Glu Asp Thr Ser Gly Lys Phe Ser Val Asp Lys
Leu 325 330 335Lys Phe Asp Lys Leu Tyr Lys Met Leu Thr Glu Ile Tyr
Thr Glu Asp 340 345 350Asn Phe Val Lys Phe Phe Lys Val Leu Asn Arg
Lys Thr Tyr Leu Asn 355 360 365Phe Asp Lys Ala Val Phe Lys Ile Asn
Ile Val Pro Lys Val Asn Tyr 370 375 380Thr Ile Tyr Asp Gly Phe Asn
Leu Arg Asn Thr Asn Leu Ala Ala Asn385 390 395 400Phe Asn Gly Gln
Asn Thr Glu Ile Asn Asn Met Asn Phe Thr Lys Leu 405 410 415Lys Asn
Phe Thr Gly Leu Phe Glu Phe Tyr Lys Leu Leu Cys Val Arg 420 425
430Gly Ile Ile Thr Ser Lys Thr Lys Ser Leu Asp Lys Gly Tyr Asn Lys
435 440 445Ala Leu Asn Asp Leu Cys Ile Lys Val Asn Asn Trp Asp Leu
Phe Phe 450 455 460Ser Pro Ser Glu Asp Asn Phe Thr Asn Asp Leu Asn
Lys Gly Glu Glu465 470 475 480Ile Thr Ser Asp Thr Asn Ile Glu Ala
Ala Glu Glu Asn Ile Ser Leu 485 490 495Asp Leu Ile Gln Gln Tyr Tyr
Leu Thr Phe Asn Phe Asp Asn Glu Pro 500 505 510Glu Asn Ile Ser Ile
Glu Asn Leu Ser Ser Asp Ile Ile Gly Gln Leu 515 520 525Glu Leu Met
Pro Asn Ile Glu Arg Phe Pro Asn Gly Lys Lys Tyr Glu 530 535 540Leu
Asp Lys Tyr Thr Met Phe His Tyr Leu Arg Ala Gln Glu Phe Glu545 550
555 560His Gly Lys Ser Arg Ile Ala Leu Thr Asn Ser Val Asn Glu Ala
Leu 565 570 575Leu Asn Pro Ser Arg Val Tyr Thr Phe Phe Ser Ser Asp
Tyr Val Lys 580 585 590Lys Val Asn Lys Ala Thr Glu Ala Ala Met Phe
Leu Gly Trp Val Glu 595 600 605Gln Leu Val Tyr Asp Phe Thr Asp Glu
Thr Ser Glu Val Ser Thr Thr 610 615 620Asp Lys Ile Ala Asp Ile Thr
Ile Ile Ile Pro Tyr Ile Gly Pro Ala625 630 635 640Leu Asn Ile Gly
Asn Met Leu Tyr Lys Asp Asp Phe Val Gly Ala Leu 645 650 655Ile Phe
Ser Gly Ala Val Ile Leu Leu Glu Phe Ile Pro Glu Ile Ala 660 665
670Ile Pro Val Leu Gly Thr Phe Ala Leu Val Ser Tyr Ile Ala Asn Lys
675 680 685Val Leu Thr Val Gln Thr Ile Asp Asn Ala Leu Ser Lys Arg
Asn Glu 690 695 700Lys Trp Asp Glu Val Tyr Lys Tyr Ile Val Thr Asn
Trp Leu Ala Lys705 710 715 720Val Asn Thr Gln Ile Asp Leu Ile Arg
Lys Lys Met Lys Glu Ala Leu 725 730 735Glu Asn Gln Ala Glu Ala Thr
Lys Ala Ile Ile Asn Tyr Gln Tyr Asn 740 745 750Gln Tyr Thr Glu Glu
Glu Lys Asn Asn Ile Asn Phe Asn Ile Asp Asp 755 760 765Leu Ser Ser
Lys Leu Asn Glu Ser Ile Asn Lys Ala Met Ile Asn Ile 770 775 780Asn
Lys Phe Leu Asn Gln Cys Ser Val Ser Tyr Leu Met Asn Ser Met785 790
795 800Ile Pro Tyr Gly Val Lys Arg Leu Glu Asp Phe Asp Ala Ser Leu
Lys 805 810 815Asp Ala Leu Leu Lys Tyr Ile Tyr Asp Asn Arg Gly Thr
Leu Ile Gly 820 825 830Gln Val Asp Arg Leu Lys Asp Lys Val Asn Asn
Thr Leu Ser Thr Asp 835 840 845Ile Pro Phe Gln Leu Ser Lys Tyr Val
Asp Asn Gln Arg Leu Leu Ser 850 855 860Thr Phe Thr Glu Tyr Ile Lys
Asn Ile Ile Asn Thr Ser Ile Leu Asn865 870 875 880Leu Arg Tyr Glu
Ser Asn His Leu Ile Asp Leu Ser Arg Tyr Ala Ser 885 890 895Lys Ile
Asn Ile Gly Ser Lys Val Asn Phe Asp Pro Ile Asp Lys Asn 900 905
910Gln Ile Gln Leu Phe Asn Leu Glu Ser Ser Lys Ile Glu Val Ile Leu
915 920 925Lys Asn Ala Ile Val Tyr Asn Ser Met Tyr Glu Asn Phe Ser
Thr Ser 930 935 940Phe Trp Ile Arg Ile Pro Lys Tyr Phe Asn Ser Ile
Ser Leu Asn Asn945 950 955 960Glu Tyr Thr Ile Ile Asn Cys Met Glu
Asn Asn Ser Gly Trp Lys Val 965 970 975Ser Leu Asn Tyr Gly Glu Ile
Ile Trp Thr Leu Gln Asp Thr Gln Glu 980 985 990Ile Lys Gln Arg Val
Val Phe Lys Tyr Ser Gln Met Ile Asn Ile Ser 995 1000 1005Asp Tyr
Ile Asn Arg Trp Ile Phe Val Thr Ile Thr Asn Asn Arg 1010 1015
1020Leu Asn Asn Ser Lys Ile Tyr Ile Asn Gly Arg Leu Ile Asp Gln
1025 1030 1035Lys Pro Ile Ser Asn Leu Gly Asn Ile His Ala Ser Asn
Asn Ile 1040 1045 1050Met Phe Lys Leu Asp Gly Cys Arg Asp Thr His
Arg Tyr Ile Trp 1055 1060 1065Ile Lys Tyr Phe Asn Leu Phe Asp Lys
Glu Leu Asn Glu Lys Glu 1070 1075 1080Ile Lys Asp Leu Tyr Asp Asn
Gln Ser Asn Ser Gly Ile Leu Lys 1085 1090 1095Asp Phe Trp Gly Asp
Tyr Leu Gln Tyr Asp Lys Pro Tyr Tyr Met 1100 1105 1110Leu Asn Leu
Tyr Asp Pro Asn Lys Tyr Val Asp Val Asn Asn Val 1115 1120 1125Gly
Ile Arg Gly Tyr Met Tyr Leu Lys Gly Pro Arg Gly Ser Val 1130 1135
1140Met Thr Thr Asn Ile Tyr Leu Asn Ser Ser Leu Tyr Arg Gly Thr
1145 1150 1155Lys Phe Ile Ile Lys Lys Tyr Ala Ser Gly Asn Lys Asp
Asn Ile 1160 1165 1170Val Arg Asn Asn Asp Arg Val Tyr Ile Asn Val
Val Val Lys Asn 1175 1180 1185Lys Glu Tyr Arg Leu Ala
Thr Asn Ala Ser Gln Ala Gly Val Glu 1190 1195 1200Lys Ile Leu Ser
Ala Leu Glu Ile Pro Asp Val Gly Asn Leu Ser 1205 1210 1215Gln Val
Val Val Met Lys Ser Lys Asn Asp Gln Gly Ile Thr Asn 1220 1225
1230Lys Cys Lys Met Asn Leu Gln Asp Asn Asn Gly Asn Asp Ile Gly
1235 1240 1245Phe Ile Gly Phe His Gln Phe Asn Asn Ile Ala Lys Leu
Val Ala 1250 1255 1260Ser Asn Trp Tyr Asn Arg Gln Ile Glu Arg Ser
Ser Arg Thr Leu 1265 1270 1275Gly Cys Ser Trp Glu Phe Ile Pro Val
Asp Asp Gly Trp Gly Glu 1280 1285 1290Arg Pro Leu
12951401291PRTClostridium botulinum 140Met Pro Val Thr Ile Asn Asn
Phe Asn Tyr Asn Asp Pro Ile Asp Asn1 5 10 15Asn Asn Ile Ile Met Met
Glu Pro Pro Phe Ala Arg Gly Thr Gly Arg 20 25 30Tyr Tyr Lys Ala Phe
Lys Ile Thr Asp Arg Ile Trp Ile Ile Pro Glu 35 40 45Arg Tyr Thr Phe
Gly Tyr Lys Pro Glu Asp Phe Asn Lys Ser Ser Gly 50 55 60Ile Phe Asn
Arg Asp Val Cys Glu Tyr Tyr Asp Pro Asp Tyr Leu Asn65 70 75 80Thr
Asn Asp Lys Lys Asn Ile Phe Leu Gln Thr Met Ile Lys Leu Phe 85 90
95Asn Arg Ile Lys Ser Lys Pro Leu Gly Glu Lys Leu Leu Glu Met Ile
100 105 110Ile Asn Gly Ile Pro Tyr Leu Gly Asp Arg Arg Val Pro Leu
Glu Glu 115 120 125Phe Asn Thr Asn Ile Ala Ser Val Thr Val Asn Lys
Leu Ile Ser Asn 130 135 140Pro Gly Glu Val Glu Arg Lys Lys Gly Ile
Phe Ala Asn Leu Ile Ile145 150 155 160Phe Gly Pro Gly Pro Val Leu
Asn Glu Asn Glu Thr Ile Asp Ile Gly 165 170 175Ile Gln Asn His Phe
Ala Ser Arg Glu Gly Phe Gly Gly Ile Met Gln 180 185 190Met Lys Phe
Cys Pro Glu Tyr Val Ser Val Phe Asn Asn Val Gln Glu 195 200 205Asn
Lys Gly Ala Ser Ile Phe Asn Arg Arg Gly Tyr Phe Ser Asp Pro 210 215
220Ala Leu Ile Leu Met His Glu Leu Ile His Val Leu His Gly Leu
Tyr225 230 235 240Gly Ile Lys Val Asp Asp Leu Pro Ile Val Pro Asn
Glu Lys Lys Phe 245 250 255Phe Met Gln Ser Thr Asp Ala Ile Gln Ala
Glu Glu Leu Tyr Thr Phe 260 265 270Gly Gly Gln Asp Pro Ser Ile Ile
Thr Pro Ser Thr Asp Lys Ser Ile 275 280 285Tyr Asp Lys Val Leu Gln
Asn Phe Arg Gly Ile Val Asp Arg Leu Asn 290 295 300Lys Val Leu Val
Cys Ile Ser Asp Pro Asn Ile Asn Ile Asn Ile Tyr305 310 315 320Lys
Asn Lys Phe Lys Asp Lys Tyr Lys Phe Val Glu Asp Ser Glu Gly 325 330
335Lys Tyr Ser Ile Asp Val Glu Ser Phe Asp Lys Leu Tyr Lys Ser Leu
340 345 350Met Phe Gly Phe Thr Glu Thr Asn Ile Ala Glu Asn Tyr Lys
Ile Lys 355 360 365Thr Arg Ala Ser Tyr Phe Ser Asp Ser Leu Pro Pro
Val Lys Ile Lys 370 375 380Asn Leu Leu Asp Asn Glu Ile Tyr Thr Ile
Glu Glu Gly Phe Asn Ile385 390 395 400Ser Asp Lys Asp Met Glu Lys
Glu Tyr Arg Gly Gln Asn Lys Ala Ile 405 410 415Asn Lys Gln Ala Tyr
Glu Glu Ile Ser Lys Glu His Leu Ala Val Tyr 420 425 430Lys Ile Gln
Met Cys Lys Ser Val Lys Ala Pro Gly Ile Cys Ile Asp 435 440 445Val
Asp Asn Glu Asp Leu Phe Phe Ile Ala Asp Lys Asn Ser Phe Ser 450 455
460Asp Asp Leu Ser Lys Asn Glu Arg Ile Glu Tyr Asn Thr Gln Ser
Asn465 470 475 480Tyr Ile Glu Asn Asp Phe Pro Ile Asn Glu Leu Ile
Leu Asp Thr Asp 485 490 495Leu Ile Ser Lys Ile Glu Leu Pro Ser Glu
Asn Thr Glu Ser Leu Thr 500 505 510Asp Phe Asn Val Asp Val Pro Val
Tyr Glu Lys Gln Pro Ala Ile Lys 515 520 525Lys Ile Phe Thr Asp Glu
Asn Thr Ile Phe Gln Tyr Leu Tyr Ser Gln 530 535 540Thr Phe Pro Leu
Asp Ile Arg Asp Ile Ser Leu Thr Ser Ser Phe Asp545 550 555 560Asp
Ala Leu Leu Phe Ser Asn Lys Val Tyr Ser Phe Phe Ser Met Asp 565 570
575Tyr Ile Lys Thr Ala Asn Lys Val Val Glu Ala Gly Leu Phe Ala Gly
580 585 590Trp Val Lys Gln Ile Val Asn Asp Phe Val Ile Glu Ala Asn
Lys Ser 595 600 605Asn Thr Met Asp Lys Ile Ala Asp Ile Ser Leu Ile
Val Pro Tyr Ile 610 615 620Gly Leu Ala Leu Asn Val Gly Asn Glu Thr
Ala Lys Gly Asn Phe Glu625 630 635 640Asn Ala Phe Glu Ile Ala Gly
Ala Ser Ile Leu Leu Glu Phe Ile Pro 645 650 655Glu Leu Leu Ile Pro
Val Val Gly Ala Phe Leu Leu Glu Ser Tyr Ile 660 665 670Asp Asn Lys
Asn Lys Ile Ile Lys Thr Ile Asp Asn Ala Leu Thr Lys 675 680 685Arg
Asn Glu Lys Trp Ser Asp Met Tyr Gly Leu Ile Val Ala Gln Trp 690 695
700Leu Ser Thr Val Asn Thr Gln Phe Tyr Thr Ile Lys Glu Gly Met
Tyr705 710 715 720Lys Ala Leu Asn Tyr Gln Ala Gln Ala Leu Glu Glu
Ile Ile Lys Tyr 725 730 735Arg Tyr Asn Ile Tyr Ser Glu Lys Glu Lys
Ser Asn Ile Asn Ile Asp 740 745 750Phe Asn Asp Ile Asn Ser Lys Leu
Asn Glu Gly Ile Asn Gln Ala Ile 755 760 765Asp Asn Ile Asn Asn Phe
Ile Asn Gly Cys Ser Val Ser Tyr Leu Met 770 775 780Lys Lys Met Ile
Pro Leu Ala Val Glu Lys Leu Leu Asp Phe Asp Asn785 790 795 800Thr
Leu Lys Lys Asn Leu Leu Asn Tyr Ile Asp Glu Asn Lys Leu Tyr 805 810
815Leu Ile Gly Ser Ala Glu Tyr Glu Lys Ser Lys Val Asn Lys Tyr Leu
820 825 830Lys Thr Ile Met Pro Phe Asp Leu Ser Ile Tyr Thr Asn Asp
Thr Ile 835 840 845Leu Ile Glu Met Phe Asn Lys Tyr Asn Ser Glu Ile
Leu Asn Asn Ile 850 855 860Ile Leu Asn Leu Arg Tyr Lys Asp Asn Asn
Leu Ile Asp Leu Ser Gly865 870 875 880Tyr Gly Ala Lys Val Glu Val
Tyr Asp Gly Val Glu Leu Asn Asp Lys 885 890 895Asn Gln Phe Lys Leu
Thr Ser Ser Ala Asn Ser Lys Ile Arg Val Thr 900 905 910Gln Asn Gln
Asn Ile Ile Phe Asn Ser Val Phe Leu Asp Phe Ser Val 915 920 925Ser
Phe Trp Ile Arg Ile Pro Lys Tyr Lys Asn Asp Gly Ile Gln Asn 930 935
940Tyr Ile His Asn Glu Tyr Thr Ile Ile Asn Cys Met Lys Asn Asn
Ser945 950 955 960Gly Trp Lys Ile Ser Ile Arg Gly Asn Arg Ile Ile
Trp Thr Leu Ile 965 970 975Asp Ile Asn Gly Lys Thr Lys Ser Val Phe
Phe Glu Tyr Asn Ile Arg 980 985 990Glu Asp Ile Ser Glu Tyr Ile Asn
Arg Trp Phe Phe Val Thr Ile Thr 995 1000 1005Asn Asn Leu Asn Asn
Ala Lys Ile Tyr Ile Asn Gly Lys Leu Glu 1010 1015 1020Ser Asn Thr
Asp Ile Lys Asp Ile Arg Glu Val Ile Ala Asn Gly 1025 1030 1035Glu
Ile Ile Phe Lys Leu Asp Gly Asp Ile Asp Arg Thr Gln Phe 1040 1045
1050Ile Trp Met Lys Tyr Phe Ser Ile Phe Asn Thr Glu Leu Ser Gln
1055 1060 1065Ser Asn Ile Glu Glu Arg Tyr Lys Ile Gln Ser Tyr Ser
Glu Tyr 1070 1075 1080Leu Lys Asp Phe Trp Gly Asn Pro Leu Met Tyr
Asn Lys Glu Tyr 1085 1090 1095Tyr Met Phe Asn Ala Gly Asn Lys Asn
Ser Tyr Ile Lys Leu Lys 1100 1105 1110Lys Asp Ser Pro Val Gly Glu
Ile Leu Thr Arg Ser Lys Tyr Asn 1115 1120 1125Gln Asn Ser Lys Tyr
Ile Asn Tyr Arg Asp Leu Tyr Ile Gly Glu 1130 1135 1140Lys Phe Ile
Ile Arg Arg Lys Ser Asn Ser Gln Ser Ile Asn Asp 1145 1150 1155Asp
Ile Val Arg Lys Glu Asp Tyr Ile Tyr Leu Asp Phe Phe Asn 1160 1165
1170Leu Asn Gln Glu Trp Arg Val Tyr Thr Tyr Lys Tyr Phe Lys Lys
1175 1180 1185Glu Glu Glu Lys Leu Phe Leu Ala Pro Ile Ser Asp Ser
Asp Glu 1190 1195 1200Phe Tyr Asn Thr Ile Gln Ile Lys Glu Tyr Asp
Glu Gln Pro Thr 1205 1210 1215Tyr Ser Cys Gln Leu Leu Phe Lys Lys
Asp Glu Glu Ser Thr Asp 1220 1225 1230Glu Ile Gly Leu Ile Gly Ile
His Arg Phe Tyr Glu Ser Gly Ile 1235 1240 1245Val Phe Glu Glu Tyr
Lys Asp Tyr Phe Cys Ile Ser Lys Trp Tyr 1250 1255 1260Leu Lys Glu
Val Lys Arg Lys Pro Tyr Asn Leu Lys Leu Gly Cys 1265 1270 1275Asn
Trp Gln Phe Ile Pro Lys Asp Glu Gly Trp Thr Glu 1280 1285
12901411291PRTClostridium botulinum 141Met Pro Ile Thr Ile Asn Asn
Phe Asn Tyr Ser Asp Pro Val Asp Asn1 5 10 15Lys Asn Ile Leu Tyr Leu
Asp Thr His Leu Asn Thr Leu Ala Asn Glu 20 25 30Pro Glu Lys Ala Phe
Arg Ile Thr Gly Asn Ile Trp Val Ile Pro Asp 35 40 45Arg Phe Ser Arg
Asn Ser Asn Pro Asn Leu Asn Lys Pro Pro Arg Val 50 55 60Thr Ser Pro
Lys Ser Gly Tyr Tyr Asp Pro Asn Tyr Leu Ser Thr Asp65 70 75 80Ser
Asp Lys Asp Pro Phe Leu Lys Glu Ile Ile Lys Leu Phe Lys Arg 85 90
95Ile Asn Ser Arg Glu Ile Gly Glu Glu Leu Ile Tyr Arg Leu Ser Thr
100 105 110Asp Ile Pro Phe Pro Gly Asn Asn Asn Thr Pro Ile Asn Thr
Phe Asp 115 120 125Phe Asp Val Asp Phe Asn Ser Val Asp Val Lys Thr
Arg Gln Gly Asn 130 135 140Asn Trp Val Lys Thr Gly Ser Ile Asn Pro
Ser Val Ile Ile Thr Gly145 150 155 160Pro Arg Glu Asn Ile Ile Asp
Pro Glu Thr Ser Thr Phe Lys Leu Thr 165 170 175Asn Asn Thr Phe Ala
Ala Gln Glu Gly Phe Gly Ala Leu Ser Ile Ile 180 185 190Ser Ile Ser
Pro Arg Phe Met Leu Thr Tyr Ser Asn Ala Thr Asn Asp 195 200 205Val
Gly Glu Gly Arg Phe Ser Lys Ser Glu Phe Cys Met Asp Pro Ile 210 215
220Leu Ile Leu Met His Glu Leu Asn His Ala Met His Asn Leu Tyr
Gly225 230 235 240Ile Ala Ile Pro Asn Asp Gln Thr Ile Ser Ser Val
Thr Ser Asn Ile 245 250 255Phe Tyr Ser Gln Tyr Asn Val Lys Leu Glu
Tyr Ala Glu Ile Tyr Ala 260 265 270Phe Gly Gly Pro Thr Ile Asp Leu
Ile Pro Lys Ser Ala Arg Lys Tyr 275 280 285Phe Glu Glu Lys Ala Leu
Asp Tyr Tyr Arg Ser Ile Ala Lys Arg Leu 290 295 300Asn Ser Ile Thr
Thr Ala Asn Pro Ser Ser Phe Asn Lys Tyr Ile Gly305 310 315 320Glu
Tyr Lys Gln Lys Leu Ile Arg Lys Tyr Arg Phe Val Val Glu Ser 325 330
335Ser Gly Glu Val Thr Val Asn Arg Asn Lys Phe Val Glu Leu Tyr Asn
340 345 350Glu Leu Thr Gln Ile Phe Thr Glu Phe Asn Tyr Ala Lys Ile
Tyr Asn 355 360 365Val Gln Asn Arg Lys Ile Tyr Leu Ser Asn Val Tyr
Thr Pro Val Thr 370 375 380Ala Asn Ile Leu Asp Asp Asn Val Tyr Asp
Ile Gln Asn Gly Phe Asn385 390 395 400Ile Pro Lys Ser Asn Leu Asn
Val Leu Phe Met Gly Gln Asn Leu Ser 405 410 415Arg Asn Pro Ala Leu
Arg Lys Val Asn Pro Glu Asn Met Leu Tyr Leu 420 425 430Phe Thr Lys
Phe Cys His Lys Ala Ile Asp Gly Arg Ser Leu Tyr Asn 435 440 445Lys
Thr Leu Asp Cys Arg Glu Leu Leu Val Lys Asn Thr Asp Leu Pro 450 455
460Phe Ile Gly Asp Ile Ser Asp Val Lys Thr Asp Ile Phe Leu Arg
Lys465 470 475 480Asp Ile Asn Glu Glu Thr Glu Val Ile Tyr Tyr Pro
Asp Asn Val Ser 485 490 495Val Asp Gln Val Ile Leu Ser Lys Asn Thr
Ser Glu His Gly Gln Leu 500 505 510Asp Leu Leu Tyr Pro Ser Ile Asp
Ser Glu Ser Glu Ile Leu Pro Gly 515 520 525Glu Asn Gln Val Phe Tyr
Asp Asn Arg Thr Gln Asn Val Asp Tyr Leu 530 535 540Asn Ser Tyr Tyr
Tyr Leu Glu Ser Gln Lys Leu Ser Asp Asn Val Glu545 550 555 560Asp
Phe Thr Phe Thr Arg Ser Ile Glu Glu Ala Leu Asp Asn Ser Ala 565 570
575Lys Val Tyr Thr Tyr Phe Pro Thr Leu Ala Asn Lys Val Asn Ala Gly
580 585 590Val Gln Gly Gly Leu Phe Leu Met Trp Ala Asn Asp Val Val
Glu Asp 595 600 605Phe Thr Thr Asn Ile Leu Arg Lys Asp Thr Leu Asp
Lys Ile Ser Asp 610 615 620Val Ser Ala Ile Ile Pro Tyr Ile Gly Pro
Ala Leu Asn Ile Ser Asn625 630 635 640Ser Val Arg Arg Gly Asn Phe
Thr Glu Ala Phe Ala Val Thr Gly Val 645 650 655Thr Ile Leu Leu Glu
Ala Phe Pro Glu Phe Thr Ile Pro Ala Leu Gly 660 665 670Ala Phe Val
Ile Tyr Ser Lys Val Gln Glu Arg Asn Glu Ile Ile Lys 675 680 685Thr
Ile Asp Asn Cys Leu Glu Gln Arg Ile Lys Arg Trp Lys Asp Ser 690 695
700Tyr Glu Trp Met Met Gly Thr Trp Leu Ser Arg Ile Ile Thr Gln
Phe705 710 715 720Asn Asn Ile Ser Tyr Gln Met Tyr Asp Ser Leu Asn
Tyr Gln Ala Gly 725 730 735Ala Ile Lys Ala Lys Ile Asp Leu Glu Tyr
Lys Lys Tyr Ser Gly Ser 740 745 750Asp Lys Glu Asn Ile Lys Ser Gln
Val Glu Asn Leu Lys Asn Ser Leu 755 760 765Asp Val Lys Ile Ser Glu
Ala Met Asn Asn Ile Asn Lys Phe Ile Arg 770 775 780Glu Cys Ser Val
Thr Tyr Leu Phe Lys Asn Met Leu Pro Lys Val Ile785 790 795 800Asp
Glu Leu Asn Glu Phe Asp Arg Asn Thr Lys Ala Lys Leu Ile Asn 805 810
815Leu Ile Asp Ser His Asn Ile Ile Leu Val Gly Glu Val Asp Lys Leu
820 825 830Lys Ala Lys Val Asn Asn Ser Phe Gln Asn Thr Ile Pro Phe
Asn Ile 835 840 845Phe Ser Tyr Thr Asn Asn Ser Leu Leu Lys Asp Ile
Ile Asn Glu Tyr 850 855 860Phe Asn Asn Ile Asn Asp Ser Lys Ile Leu
Ser Leu Gln Asn Arg Lys865 870 875 880Asn Thr Leu Val Asp Thr Ser
Gly Tyr Asn Ala Glu Val Ser Glu Glu 885 890 895Gly Asp Val Gln Leu
Asn Pro Ile Phe Pro Phe Asp Phe Lys Leu Gly 900 905 910Ser Ser Gly
Glu Asp Arg Gly Lys Val Ile Val Thr Gln Asn Glu Asn 915 920 925Ile
Val Tyr Asn Ser Met Tyr Glu Ser Phe Ser Ile Ser Phe Trp Ile 930 935
940Arg Ile Asn Lys Trp Val Ser Asn Leu Pro Gly Tyr Thr Ile Ile
Asp945 950 955 960Ser Val Lys Asn Asn Ser Gly Trp Ser Ile Gly Ile
Ile Ser Asn Phe 965 970 975Leu Val Phe Thr Leu Lys Gln Asn Glu Asp
Ser Glu Gln Ser Ile Asn 980 985 990Phe Ser Tyr Asp Ile Ser Asn Asn
Ala Pro Gly Tyr Asn Lys Trp Phe 995 1000 1005Phe Val Thr Val Thr
Asn Asn Met Met Gly Asn Met Lys Ile Tyr 1010 1015 1020Ile Asn Gly
Lys Leu Ile Asp Thr Ile Lys Val Lys Glu Leu Thr 1025 1030 1035Gly
Ile Asn Phe Ser Lys Thr Ile Thr Phe Glu Ile Asn Lys Ile 1040 1045
1050Pro Asp Thr Gly Leu Ile Thr Ser Asp Ser
Asp Asn Ile Asn Met 1055 1060 1065Trp Ile Arg Asp Phe Tyr Ile Phe
Ala Lys Glu Leu Asp Gly Lys 1070 1075 1080Asp Ile Asn Ile Leu Phe
Asn Ser Leu Gln Tyr Thr Asn Val Val 1085 1090 1095Lys Asp Tyr Trp
Gly Asn Asp Leu Arg Tyr Asn Lys Glu Tyr Tyr 1100 1105 1110Met Val
Asn Ile Asp Tyr Leu Asn Arg Tyr Met Tyr Ala Asn Ser 1115 1120
1125Arg Gln Ile Val Phe Asn Thr Arg Arg Asn Asn Asn Asp Phe Asn
1130 1135 1140Glu Gly Tyr Lys Ile Ile Ile Lys Arg Ile Arg Gly Asn
Thr Asn 1145 1150 1155Asp Thr Arg Val Arg Gly Gly Asp Ile Leu Tyr
Phe Asp Met Thr 1160 1165 1170Ile Asn Asn Lys Ala Tyr Asn Leu Phe
Met Lys Asn Glu Thr Met 1175 1180 1185Tyr Ala Asp Asn His Ser Thr
Glu Asp Ile Tyr Ala Ile Gly Leu 1190 1195 1200Arg Glu Gln Thr Lys
Asp Ile Asn Asp Asn Ile Ile Phe Gln Ile 1205 1210 1215Gln Pro Met
Asn Asn Thr Tyr Tyr Tyr Ala Ser Gln Ile Phe Lys 1220 1225 1230Ser
Asn Phe Asn Gly Glu Asn Ile Ser Gly Ile Cys Ser Ile Gly 1235 1240
1245Thr Tyr Arg Phe Arg Leu Gly Gly Asp Trp Tyr Arg His Asn Tyr
1250 1255 1260Leu Val Pro Thr Val Lys Gln Gly Asn Tyr Ala Ser Leu
Leu Glu 1265 1270 1275Ser Thr Ser Thr His Trp Gly Phe Val Pro Val
Ser Glu 1280 1285 12901421276PRTClostridium botulinum 142Met Thr
Trp Pro Val Lys Asp Phe Asn Tyr Ser Asp Pro Val Asn Asp1 5 10 15Asn
Asp Ile Leu Tyr Leu Arg Ile Pro Gln Asn Lys Leu Ile Thr Thr 20 25
30Pro Val Lys Ala Phe Met Ile Thr Gln Asn Ile Trp Val Ile Pro Glu
35 40 45Arg Phe Ser Ser Asp Thr Asn Pro Ser Leu Ser Lys Pro Pro Arg
Pro 50 55 60Thr Ser Lys Tyr Gln Ser Tyr Tyr Asp Pro Ser Tyr Leu Ser
Thr Asp65 70 75 80Glu Gln Lys Asp Thr Phe Leu Lys Gly Ile Ile Lys
Leu Phe Lys Arg 85 90 95Ile Asn Glu Arg Asp Ile Gly Lys Lys Leu Ile
Asn Tyr Leu Val Val 100 105 110Gly Ser Pro Phe Met Gly Asp Ser Ser
Thr Pro Glu Asp Thr Phe Asp 115 120 125Phe Thr Arg His Thr Thr Asn
Ile Ala Val Glu Lys Phe Glu Asn Gly 130 135 140Ser Trp Lys Val Thr
Asn Ile Ile Thr Pro Ser Val Leu Ile Phe Gly145 150 155 160Pro Leu
Pro Asn Ile Leu Asp Tyr Thr Ala Ser Leu Thr Leu Gln Gly 165 170
175Gln Gln Ser Asn Pro Ser Phe Glu Gly Phe Gly Thr Leu Ser Ile Leu
180 185 190Lys Val Ala Pro Glu Phe Leu Leu Thr Phe Ser Asp Val Thr
Ser Asn 195 200 205Gln Ser Ser Ala Val Leu Gly Lys Ser Ile Phe Cys
Met Asp Pro Val 210 215 220Ile Ala Leu Met His Glu Leu Thr His Ser
Leu His Gln Leu Tyr Gly225 230 235 240Ile Asn Ile Pro Ser Asp Lys
Arg Ile Arg Pro Gln Val Ser Glu Gly 245 250 255Phe Phe Ser Gln Asp
Gly Pro Asn Val Gln Phe Glu Glu Leu Tyr Thr 260 265 270Phe Gly Gly
Leu Asp Val Glu Ile Ile Pro Gln Ile Glu Arg Ser Gln 275 280 285Leu
Arg Glu Lys Ala Leu Gly His Tyr Lys Asp Ile Ala Lys Arg Leu 290 295
300Asn Asn Ile Asn Lys Thr Ile Pro Ser Ser Trp Ile Ser Asn Ile
Asp305 310 315 320Lys Tyr Lys Lys Ile Phe Ser Glu Lys Tyr Asn Phe
Asp Lys Asp Asn 325 330 335Thr Gly Asn Phe Val Val Asn Ile Asp Lys
Phe Asn Ser Leu Tyr Ser 340 345 350Asp Leu Thr Asn Val Met Ser Glu
Val Val Tyr Ser Ser Gln Tyr Asn 355 360 365Val Lys Asn Arg Thr His
Tyr Phe Ser Arg His Tyr Leu Pro Val Phe 370 375 380Ala Asn Ile Leu
Asp Asp Asn Ile Tyr Thr Ile Arg Asp Gly Phe Asn385 390 395 400Leu
Thr Asn Lys Gly Phe Asn Ile Glu Asn Ser Gly Gln Asn Ile Glu 405 410
415Arg Asn Pro Ala Leu Gln Lys Leu Ser Ser Glu Ser Val Val Asp Leu
420 425 430Phe Thr Lys Val Cys Leu Arg Leu Thr Lys Asn Ser Arg Asp
Asp Ser 435 440 445Thr Cys Ile Lys Val Lys Asn Asn Arg Leu Pro Tyr
Val Ala Asp Lys 450 455 460Asp Ser Ile Ser Gln Glu Ile Phe Glu Asn
Lys Ile Ile Thr Asp Glu465 470 475 480Thr Asn Val Gln Asn Tyr Ser
Asp Lys Phe Ser Leu Asp Glu Ser Ile 485 490 495Leu Asp Gly Gln Val
Pro Ile Asn Pro Glu Ile Val Asp Pro Leu Leu 500 505 510Pro Asn Val
Asn Met Glu Pro Leu Asn Leu Pro Gly Glu Glu Ile Val 515 520 525Phe
Tyr Asp Asp Ile Thr Lys Tyr Val Asp Tyr Leu Asn Ser Tyr Tyr 530 535
540Tyr Leu Glu Ser Gln Lys Leu Ser Asn Asn Val Glu Asn Ile Thr
Leu545 550 555 560Thr Thr Ser Val Glu Glu Ala Leu Gly Tyr Ser Asn
Lys Ile Tyr Thr 565 570 575Phe Leu Pro Ser Leu Ala Glu Lys Val Asn
Lys Gly Val Gln Ala Gly 580 585 590Leu Phe Leu Asn Trp Ala Asn Glu
Val Val Glu Asp Phe Thr Thr Asn 595 600 605Ile Met Lys Lys Asp Thr
Leu Asp Lys Ile Ser Asp Val Ser Val Ile 610 615 620Ile Pro Tyr Ile
Gly Pro Ala Leu Asn Ile Gly Asn Ser Ala Leu Arg625 630 635 640Gly
Asn Phe Asn Gln Ala Phe Ala Thr Ala Gly Val Ala Phe Leu Leu 645 650
655Glu Gly Phe Pro Glu Phe Thr Ile Pro Ala Leu Gly Val Phe Thr Phe
660 665 670Tyr Ser Ser Ile Gln Glu Arg Glu Lys Ile Ile Lys Thr Ile
Glu Asn 675 680 685Cys Leu Glu Gln Arg Val Lys Arg Trp Lys Asp Ser
Tyr Gln Trp Met 690 695 700Val Ser Asn Trp Leu Ser Arg Ile Thr Thr
Gln Phe Asn His Ile Asn705 710 715 720Tyr Gln Met Tyr Asp Ser Leu
Ser Tyr Gln Ala Asp Ala Ile Lys Ala 725 730 735Lys Ile Asp Leu Glu
Tyr Lys Lys Tyr Ser Gly Ser Asp Lys Glu Asn 740 745 750Ile Lys Ser
Gln Val Glu Asn Leu Lys Asn Ser Leu Asp Val Lys Ile 755 760 765Ser
Glu Ala Met Asn Asn Ile Asn Lys Phe Ile Arg Glu Cys Ser Val 770 775
780Thr Tyr Leu Phe Lys Asn Met Leu Pro Lys Val Ile Asp Glu Leu
Asn785 790 795 800Lys Phe Asp Leu Arg Thr Lys Thr Glu Leu Ile Asn
Leu Ile Asp Ser 805 810 815His Asn Ile Ile Leu Val Gly Glu Val Asp
Arg Leu Lys Ala Lys Val 820 825 830Asn Glu Ser Phe Glu Asn Thr Met
Pro Phe Asn Ile Phe Ser Tyr Thr 835 840 845Asn Asn Ser Leu Leu Lys
Asp Ile Ile Asn Glu Tyr Phe Asn Ser Ile 850 855 860Asn Asp Ser Lys
Ile Leu Ser Leu Gln Asn Lys Lys Asn Ala Leu Val865 870 875 880Asp
Thr Ser Gly Tyr Asn Ala Glu Val Arg Val Gly Asp Asn Val Gln 885 890
895Leu Asn Thr Ile Tyr Thr Asn Asp Phe Lys Leu Ser Ser Ser Gly Asp
900 905 910Lys Ile Ile Val Asn Leu Asn Asn Asn Ile Leu Tyr Ser Ala
Ile Tyr 915 920 925Glu Asn Ser Ser Val Ser Phe Trp Ile Lys Ile Ser
Lys Asp Leu Thr 930 935 940Asn Ser His Asn Glu Tyr Thr Ile Ile Asn
Ser Ile Glu Gln Asn Ser945 950 955 960Gly Trp Lys Leu Cys Ile Arg
Asn Gly Asn Ile Glu Trp Ile Leu Gln 965 970 975Asp Val Asn Arg Lys
Tyr Lys Ser Leu Ile Phe Asp Tyr Ser Glu Ser 980 985 990Leu Ser His
Thr Gly Tyr Thr Asn Lys Trp Phe Phe Val Thr Ile Thr 995 1000
1005Asn Asn Ile Met Gly Tyr Met Lys Leu Tyr Ile Asn Gly Glu Leu
1010 1015 1020Lys Gln Ser Gln Lys Ile Glu Asp Leu Asp Glu Val Lys
Leu Asp 1025 1030 1035Lys Thr Ile Val Phe Gly Ile Asp Glu Asn Ile
Asp Glu Asn Gln 1040 1045 1050Met Leu Trp Ile Arg Asp Phe Asn Ile
Phe Ser Lys Glu Leu Ser 1055 1060 1065Asn Glu Asp Ile Asn Ile Val
Tyr Glu Gly Gln Ile Leu Arg Asn 1070 1075 1080Val Ile Lys Asp Tyr
Trp Gly Asn Pro Leu Lys Phe Asp Thr Glu 1085 1090 1095Tyr Tyr Ile
Ile Asn Asp Asn Tyr Ile Asp Arg Tyr Ile Ala Pro 1100 1105 1110Glu
Ser Asn Val Leu Val Leu Val Gln Tyr Pro Asp Arg Ser Lys 1115 1120
1125Leu Tyr Thr Gly Asn Pro Ile Thr Ile Lys Ser Val Ser Asp Lys
1130 1135 1140Asn Pro Tyr Ser Arg Ile Leu Asn Gly Asp Asn Ile Ile
Leu His 1145 1150 1155Met Leu Tyr Asn Ser Arg Lys Tyr Met Ile Ile
Arg Asp Thr Asp 1160 1165 1170Thr Ile Tyr Ala Thr Gln Gly Gly Glu
Cys Ser Gln Asn Cys Val 1175 1180 1185Tyr Ala Leu Lys Leu Gln Ser
Asn Leu Gly Asn Tyr Gly Ile Gly 1190 1195 1200Ile Phe Ser Ile Lys
Asn Ile Val Ser Lys Asn Lys Tyr Cys Ser 1205 1210 1215Gln Ile Phe
Ser Ser Phe Arg Glu Asn Thr Met Leu Leu Ala Asp 1220 1225 1230Ile
Tyr Lys Pro Trp Arg Phe Ser Phe Lys Asn Ala Tyr Thr Pro 1235 1240
1245Val Ala Val Thr Asn Tyr Glu Thr Lys Leu Leu Ser Thr Ser Ser
1250 1255 1260Phe Trp Lys Phe Ile Ser Arg Asp Pro Gly Trp Val Glu
1265 1270 12751431251PRTClostridium botulinum 143Met Pro Lys Ile
Asn Ser Phe Asn Tyr Asn Asp Pro Val Asn Asp Arg1 5 10 15Thr Ile Leu
Tyr Ile Lys Pro Gly Gly Cys Gln Glu Phe Tyr Lys Ser 20 25 30Phe Asn
Ile Met Lys Asn Ile Trp Ile Ile Pro Glu Arg Asn Val Ile 35 40 45Gly
Thr Thr Pro Gln Asp Phe His Pro Pro Thr Ser Leu Lys Asn Gly 50 55
60Asp Ser Ser Tyr Tyr Asp Pro Asn Tyr Leu Gln Ser Asp Glu Glu Lys65
70 75 80Asp Arg Phe Leu Lys Ile Val Thr Lys Ile Phe Asn Arg Ile Asn
Asn 85 90 95Asn Leu Ser Gly Gly Ile Leu Leu Glu Glu Leu Ser Lys Ala
Asn Pro 100 105 110Tyr Leu Gly Asn Asp Asn Thr Pro Asp Asn Gln Phe
His Ile Gly Asp 115 120 125Ala Ser Ala Val Glu Ile Lys Phe Ser Asn
Gly Ser Gln Asp Ile Leu 130 135 140Leu Pro Asn Val Ile Ile Met Gly
Ala Glu Pro Asp Leu Phe Glu Thr145 150 155 160Asn Ser Ser Asn Ile
Ser Leu Arg Asn Asn Tyr Met Pro Ser Asn His 165 170 175Arg Phe Gly
Ser Ile Ala Ile Val Thr Phe Ser Pro Glu Tyr Ser Phe 180 185 190Arg
Phe Asn Asp Asn Cys Met Asn Glu Phe Ile Gln Asp Pro Ala Leu 195 200
205Thr Leu Met His Glu Leu Ile His Ser Leu His Gly Leu Tyr Gly Ala
210 215 220Lys Gly Ile Thr Thr Lys Tyr Thr Ile Thr Gln Lys Gln Asn
Pro Leu225 230 235 240Ile Thr Asn Ile Arg Gly Thr Asn Ile Glu Glu
Phe Leu Thr Phe Gly 245 250 255Gly Thr Asp Leu Asn Ile Ile Thr Ser
Ala Gln Ser Asn Asp Ile Tyr 260 265 270Thr Asn Leu Leu Ala Asp Tyr
Lys Lys Ile Ala Ser Lys Leu Ser Lys 275 280 285Val Gln Val Ser Asn
Pro Leu Leu Asn Pro Tyr Lys Asp Val Phe Glu 290 295 300Ala Lys Tyr
Gly Leu Asp Lys Asp Ala Ser Gly Ile Tyr Ser Val Asn305 310 315
320Ile Asn Lys Phe Asn Asp Ile Phe Lys Lys Leu Tyr Ser Phe Thr Glu
325 330 335Phe Asp Leu Arg Thr Lys Phe Gln Val Lys Cys Arg Gln Thr
Tyr Ile 340 345 350Gly Gln Tyr Lys Tyr Phe Lys Leu Ser Asn Leu Leu
Asn Asp Ser Ile 355 360 365Tyr Asn Ile Ser Glu Gly Tyr Asn Ile Asn
Asn Leu Lys Val Asn Phe 370 375 380Arg Gly Gln Asn Ala Asn Leu Asn
Pro Arg Ile Ile Thr Pro Ile Thr385 390 395 400Gly Arg Gly Leu Val
Lys Lys Ile Ile Arg Phe Cys Lys Asn Ile Val 405 410 415Ser Val Lys
Gly Ile Arg Lys Ser Ile Cys Ile Glu Ile Asn Asn Gly 420 425 430Glu
Leu Phe Phe Val Ala Ser Glu Asn Ser Tyr Asn Asp Asp Asn Ile 435 440
445Asn Thr Pro Lys Glu Ile Asp Asp Thr Val Thr Ser Asn Asn Asn Tyr
450 455 460Glu Asn Asp Leu Asp Gln Val Ile Leu Asn Phe Asn Ser Glu
Ser Ala465 470 475 480Pro Gly Leu Ser Asp Glu Lys Leu Asn Leu Thr
Ile Gln Asn Asp Ala 485 490 495Tyr Ile Pro Lys Tyr Asp Ser Asn Gly
Thr Ser Asp Ile Glu Gln His 500 505 510Asp Val Asn Glu Leu Asn Val
Phe Phe Tyr Leu Asp Ala Gln Lys Val 515 520 525Pro Glu Gly Glu Asn
Asn Val Asn Leu Thr Ser Ser Ile Asp Thr Ala 530 535 540Leu Leu Glu
Gln Pro Lys Ile Tyr Thr Phe Phe Ser Ser Glu Phe Ile545 550 555
560Asn Asn Val Asn Lys Pro Val Gln Ala Ala Leu Phe Val Ser Trp Ile
565 570 575Gln Gln Val Leu Val Asp Phe Thr Thr Glu Ala Asn Gln Lys
Ser Thr 580 585 590Val Asp Lys Ile Ala Asp Ile Ser Ile Val Val Pro
Tyr Ile Gly Leu 595 600 605Ala Leu Asn Ile Gly Asn Glu Ala Gln Lys
Gly Asn Phe Lys Asp Ala 610 615 620Leu Glu Leu Leu Gly Ala Gly Ile
Leu Leu Glu Phe Glu Pro Glu Leu625 630 635 640Leu Ile Pro Thr Ile
Leu Val Phe Thr Ile Lys Ser Phe Leu Gly Ser 645 650 655Ser Asp Asn
Lys Asn Lys Val Ile Lys Ala Ile Asn Asn Ala Leu Lys 660 665 670Glu
Arg Asp Glu Lys Trp Lys Glu Val Tyr Ser Phe Ile Val Ser Asn 675 680
685Trp Met Thr Lys Ile Asn Thr Gln Phe Asn Lys Arg Lys Glu Gln Met
690 695 700Tyr Gln Ala Leu Gln Asn Gln Val Asn Ala Ile Lys Thr Ile
Ile Glu705 710 715 720Ser Lys Tyr Asn Ser Tyr Thr Leu Glu Glu Lys
Asn Glu Leu Thr Asn 725 730 735Lys Tyr Asp Ile Lys Gln Ile Glu Asn
Glu Leu Asn Gln Lys Val Ser 740 745 750Ile Ala Met Asn Asn Ile Asp
Arg Phe Leu Thr Glu Ser Ser Ile Ser 755 760 765Tyr Leu Met Lys Ile
Ile Asn Glu Val Lys Ile Asn Lys Leu Arg Glu 770 775 780Tyr Asp Glu
Asn Val Lys Thr Tyr Leu Leu Asn Tyr Ile Ile Gln His785 790 795
800Gly Ser Ile Leu Gly Glu Ser Gln Gln Glu Leu Asn Ser Met Val Thr
805 810 815Asp Thr Leu Asn Asn Ser Ile Pro Phe Lys Leu Ser Ser Tyr
Thr Asp 820 825 830Asp Lys Ile Leu Ile Ser Tyr Phe Asn Lys Phe Phe
Lys Arg Ile Lys 835 840 845Ser Ser Ser Val Leu Asn Met Arg Tyr Lys
Asn Asp Lys Tyr Val Asp 850 855 860Thr Ser Gly Tyr Asp Ser Asn Ile
Asn Ile Asn Gly Asp Val Tyr Lys865 870 875 880Tyr Pro Thr Asn Lys
Asn Gln Phe Gly Ile Tyr Asn Asp Lys Leu Ser 885 890 895Glu Val Asn
Ile Ser Gln Asn Asp Tyr Ile Ile Tyr Asp Asn Lys Tyr 900 905 910Lys
Asn Phe Ser Ile Ser Phe Trp Val Arg Ile Pro Asn Tyr Asp Asn 915 920
925Lys Ile Val Asn Val Asn Asn Glu Tyr Thr Ile Ile Asn Cys Met Arg
930 935 940Asp Asn Asn Ser Gly Trp Lys Val
Ser Leu Asn His Asn Glu Ile Ile945 950 955 960Trp Thr Phe Glu Asp
Asn Arg Gly Ile Asn Gln Lys Leu Ala Phe Asn 965 970 975Tyr Gly Asn
Ala Asn Gly Ile Ser Asp Tyr Ile Asn Lys Trp Ile Phe 980 985 990Val
Thr Ile Thr Asn Asp Arg Leu Gly Asp Ser Lys Leu Tyr Ile Asn 995
1000 1005Gly Asn Leu Ile Asp Gln Lys Ser Ile Leu Asn Leu Gly Asn
Ile 1010 1015 1020His Val Ser Asp Asn Ile Leu Phe Lys Ile Val Asn
Cys Ser Tyr 1025 1030 1035Thr Arg Tyr Ile Gly Ile Arg Tyr Phe Asn
Ile Phe Asp Lys Glu 1040 1045 1050Leu Asp Glu Thr Glu Ile Gln Thr
Leu Tyr Ser Asn Glu Pro Asn 1055 1060 1065Thr Asn Ile Leu Lys Asp
Phe Trp Gly Asn Tyr Leu Leu Tyr Asp 1070 1075 1080Lys Glu Tyr Tyr
Leu Leu Asn Val Leu Lys Pro Asn Asn Phe Ile 1085 1090 1095Asp Arg
Arg Lys Asp Ser Thr Leu Ser Ile Asn Asn Ile Arg Ser 1100 1105
1110Thr Ile Leu Leu Ala Asn Arg Leu Tyr Ser Gly Ile Lys Val Lys
1115 1120 1125Ile Gln Arg Val Asn Asn Ser Ser Thr Asn Asp Asn Leu
Val Arg 1130 1135 1140Lys Asn Asp Gln Val Tyr Ile Asn Phe Val Ala
Ser Lys Thr His 1145 1150 1155Leu Phe Pro Leu Tyr Ala Asp Thr Ala
Thr Thr Asn Lys Glu Lys 1160 1165 1170Thr Ile Lys Ile Ser Ser Ser
Gly Asn Arg Phe Asn Gln Val Val 1175 1180 1185Val Met Asn Ser Val
Gly Asn Cys Thr Met Asn Phe Lys Asn Asn 1190 1195 1200Asn Gly Asn
Asn Ile Gly Leu Leu Gly Phe Lys Ala Asp Thr Val 1205 1210 1215Val
Ala Ser Thr Trp Tyr Tyr Thr His Met Arg Asp His Thr Asn 1220 1225
1230Ser Asn Gly Cys Phe Trp Asn Phe Ile Ser Glu Glu His Gly Trp
1235 1240 1245Gln Glu Lys 12501441274PRTClostridium botulinum
144Met Pro Val Ala Ile Asn Ser Phe Asn Tyr Asn Asp Pro Val Asn Asp1
5 10 15Asp Thr Ile Leu Tyr Met Gln Ile Pro Tyr Glu Glu Lys Ser Lys
Lys 20 25 30Tyr Tyr Lys Ala Phe Glu Ile Met Arg Asn Val Trp Ile Ile
Pro Glu 35 40 45Arg Asn Thr Ile Gly Thr Asn Pro Ser Asp Phe Asp Pro
Pro Ala Ser 50 55 60Leu Lys Asn Gly Ser Ser Ala Tyr Tyr Asp Pro Asn
Tyr Leu Thr Thr65 70 75 80Asp Ala Glu Lys Asp Arg Tyr Leu Lys Thr
Thr Ile Lys Leu Phe Lys 85 90 95Arg Ile Asn Ser Asn Pro Ala Gly Lys
Val Leu Leu Gln Glu Ile Ser 100 105 110Tyr Ala Lys Pro Tyr Leu Gly
Asn Asp His Thr Pro Ile Asp Glu Phe 115 120 125Ser Pro Val Thr Arg
Thr Thr Ser Val Asn Ile Lys Leu Ser Thr Asn 130 135 140Val Glu Ser
Ser Met Leu Leu Asn Leu Leu Val Leu Gly Ala Gly Pro145 150 155
160Asp Ile Phe Glu Ser Cys Cys Tyr Pro Val Arg Lys Leu Ile Asp Pro
165 170 175Asp Val Val Tyr Asp Pro Ser Asn Tyr Gly Phe Gly Ser Ile
Asn Ile 180 185 190Val Thr Phe Ser Pro Glu Tyr Glu Tyr Thr Phe Asn
Asp Ile Ser Gly 195 200 205Gly His Asn Ser Ser Thr Glu Ser Phe Ile
Ala Asp Pro Ala Ile Ser 210 215 220Leu Ala His Glu Leu Ile His Ala
Leu His Gly Leu Tyr Gly Ala Arg225 230 235 240Gly Val Thr Tyr Glu
Glu Thr Ile Glu Val Lys Gln Ala Pro Leu Met 245 250 255Ile Ala Glu
Lys Pro Ile Arg Leu Glu Glu Phe Leu Thr Phe Gly Gly 260 265 270Gln
Asp Leu Asn Ile Ile Thr Ser Ala Met Lys Glu Lys Ile Tyr Asn 275 280
285Asn Leu Leu Ala Asn Tyr Glu Lys Ile Ala Thr Arg Leu Ser Glu Val
290 295 300Asn Ser Ala Pro Pro Glu Tyr Asp Ile Asn Glu Tyr Lys Asp
Tyr Phe305 310 315 320Gln Trp Lys Tyr Gly Leu Asp Lys Asn Ala Asp
Gly Ser Tyr Thr Val 325 330 335Asn Glu Asn Lys Phe Asn Glu Ile Tyr
Lys Lys Leu Tyr Ser Phe Thr 340 345 350Glu Ser Asp Leu Ala Asn Lys
Phe Lys Val Lys Cys Arg Asn Thr Tyr 355 360 365Phe Ile Lys Tyr Glu
Phe Leu Lys Val Pro Asn Leu Leu Asp Asp Asp 370 375 380Ile Tyr Thr
Val Ser Glu Gly Phe Asn Ile Gly Asn Leu Ala Val Asn385 390 395
400Asn Arg Gly Gln Ser Ile Lys Leu Asn Pro Lys Ile Ile Asp Ser Ile
405 410 415Pro Asp Lys Gly Leu Val Glu Lys Ile Val Lys Phe Cys Lys
Ser Val 420 425 430Ile Pro Arg Lys Gly Thr Lys Ala Pro Pro Arg Leu
Cys Ile Arg Val 435 440 445Asn Asn Ser Glu Leu Phe Phe Val Ala Ser
Glu Ser Ser Tyr Asn Glu 450 455 460Asn Asp Ile Asn Thr Pro Lys Glu
Ile Asp Asp Thr Thr Asn Leu Asn465 470 475 480Asn Asn Tyr Arg Asn
Asn Leu Asp Glu Val Ile Leu Asp Tyr Asn Ser 485 490 495Gln Thr Ile
Pro Gln Ile Ser Asn Arg Thr Leu Asn Thr Leu Val Gln 500 505 510Asp
Asn Ser Tyr Val Pro Arg Tyr Asp Ser Asn Gly Thr Ser Glu Ile 515 520
525Glu Glu Tyr Asp Val Val Asp Phe Asn Val Phe Phe Tyr Leu His Ala
530 535 540Gln Lys Val Pro Glu Gly Glu Thr Asn Ile Ser Leu Thr Ser
Ser Ile545 550 555 560Asp Thr Ala Leu Leu Glu Glu Ser Lys Asp Ile
Phe Phe Ser Ser Glu 565 570 575Phe Ile Asp Thr Ile Asn Lys Pro Val
Asn Ala Ala Leu Phe Ile Asp 580 585 590Trp Ile Ser Lys Val Ile Arg
Asp Phe Thr Thr Glu Ala Thr Gln Lys 595 600 605Ser Thr Val Asp Lys
Ile Ala Asp Ile Ser Leu Ile Val Pro Tyr Val 610 615 620Gly Leu Ala
Leu Asn Ile Ile Ile Glu Ala Glu Lys Gly Asn Phe Glu625 630 635
640Glu Ala Phe Glu Leu Leu Gly Val Gly Ile Leu Leu Glu Phe Val Pro
645 650 655Glu Leu Thr Ile Pro Val Ile Leu Val Phe Thr Ile Lys Ser
Tyr Ile 660 665 670Asp Ser Tyr Glu Asn Lys Asn Lys Ala Ile Lys Ala
Ile Asn Asn Ser 675 680 685Leu Ile Glu Arg Glu Ala Lys Trp Lys Glu
Ile Tyr Ser Trp Ile Val 690 695 700Ser Asn Trp Leu Thr Arg Ile Asn
Thr Gln Phe Asn Lys Arg Lys Glu705 710 715 720Gln Met Tyr Gln Ala
Leu Gln Asn Gln Val Asp Ala Ile Lys Thr Ala 725 730 735Ile Glu Tyr
Lys Tyr Asn Asn Tyr Thr Ser Asp Glu Lys Asn Arg Leu 740 745 750Glu
Ser Glu Tyr Asn Ile Asn Asn Ile Glu Glu Glu Leu Asn Lys Lys 755 760
765Val Ser Leu Ala Met Lys Asn Ile Glu Arg Phe Met Thr Glu Ser Ser
770 775 780Ile Ser Tyr Leu Met Lys Leu Ile Asn Glu Ala Lys Val Gly
Lys Leu785 790 795 800Lys Lys Tyr Asp Asn His Val Lys Ser Asp Leu
Leu Asn Tyr Ile Leu 805 810 815Asp His Arg Ser Ile Leu Gly Glu Gln
Thr Asn Glu Leu Ser Asp Leu 820 825 830Val Thr Ser Thr Leu Asn Ser
Ser Ile Pro Phe Glu Leu Ser Ser Tyr 835 840 845Thr Asn Asp Lys Ile
Leu Ile Ile Tyr Phe Asn Arg Leu Tyr Lys Lys 850 855 860Ile Lys Asp
Ser Ser Ile Leu Asp Met Arg Tyr Glu Asn Asn Lys Phe865 870 875
880Ile Asp Ile Ser Gly Tyr Gly Ser Asn Ile Ser Ile Asn Gly Asn Val
885 890 895Tyr Ile Tyr Ser Thr Asn Arg Asn Gln Phe Gly Ile Tyr Asn
Ser Arg 900 905 910Leu Ser Glu Val Asn Ile Ala Gln Asn Asn Asp Ile
Ile Tyr Asn Ser 915 920 925Arg Tyr Gln Asn Phe Ser Ile Ser Phe Trp
Val Arg Ile Pro Lys His 930 935 940Tyr Lys Pro Met Asn His Asn Arg
Glu Tyr Thr Ile Ile Asn Cys Met945 950 955 960Gly Asn Asn Asn Ser
Gly Trp Lys Ile Ser Leu Arg Thr Val Arg Asp 965 970 975Cys Glu Ile
Ile Trp Thr Leu Gln Asp Thr Ser Gly Asn Lys Glu Asn 980 985 990Leu
Ile Phe Arg Tyr Glu Glu Leu Asn Arg Ile Ser Asn Tyr Ile Asn 995
1000 1005Lys Trp Ile Phe Val Thr Ile Thr Asn Asn Arg Leu Gly Asn
Ser 1010 1015 1020Arg Ile Tyr Ile Asn Gly Asn Leu Ile Val Glu Lys
Ser Ile Ser 1025 1030 1035Asn Leu Gly Asp Ile His Val Ser Asp Asn
Ile Leu Phe Lys Ile 1040 1045 1050Val Gly Cys Asp Asp Glu Thr Tyr
Val Gly Ile Arg Tyr Phe Lys 1055 1060 1065Val Phe Asn Thr Glu Leu
Asp Lys Thr Glu Ile Glu Thr Leu Tyr 1070 1075 1080Ser Asn Glu Pro
Asp Pro Ser Ile Leu Lys Asn Tyr Trp Gly Asn 1085 1090 1095Tyr Leu
Leu Tyr Asn Lys Lys Tyr Tyr Leu Phe Asn Leu Leu Arg 1100 1105
1110Lys Asp Lys Tyr Ile Thr Leu Asn Ser Gly Ile Leu Asn Ile Asn
1115 1120 1125Gln Gln Arg Gly Val Thr Glu Gly Ser Val Phe Leu Asn
Tyr Lys 1130 1135 1140Leu Tyr Glu Gly Val Glu Val Ile Ile Arg Lys
Asn Gly Pro Ile 1145 1150 1155Asp Ile Ser Asn Thr Asp Asn Phe Val
Arg Lys Asn Asp Leu Ala 1160 1165 1170Tyr Ile Asn Val Val Asp Arg
Gly Val Glu Tyr Arg Leu Tyr Ala 1175 1180 1185Asp Thr Lys Ser Glu
Lys Glu Lys Ile Ile Arg Thr Ser Asn Leu 1190 1195 1200Asn Asp Ser
Leu Gly Gln Ile Ile Val Met Asp Ser Ile Gly Asn 1205 1210 1215Asn
Cys Thr Met Asn Phe Gln Asn Asn Asn Gly Ser Asn Ile Gly 1220 1225
1230Leu Leu Gly Phe His Ser Asn Asn Leu Val Ala Ser Ser Trp Tyr
1235 1240 1245Tyr Asn Asn Ile Arg Arg Asn Thr Ser Ser Asn Gly Cys
Phe Trp 1250 1255 1260Ser Ser Ile Ser Lys Glu Asn Gly Trp Lys Glu
1265 12701451297PRTClostridium botulinumMOD_RES(7)..(7)Any amino
acid 145Met Pro Val Asn Ile Lys Xaa Phe Asn Tyr Asn Asp Pro Ile Asn
Asn1 5 10 15Asp Asp Ile Ile Met Met Glu Pro Phe Asn Asp Pro Gly Pro
Gly Thr 20 25 30Tyr Tyr Lys Ala Phe Arg Ile Ile Asp Arg Ile Trp Ile
Val Pro Glu 35 40 45Arg Phe Thr Tyr Gly Phe Gln Pro Asp Gln Phe Asn
Ala Ser Thr Gly 50 55 60Val Phe Ser Lys Asp Val Tyr Glu Tyr Tyr Asp
Pro Thr Tyr Leu Lys65 70 75 80Thr Asp Ala Glu Lys Asp Lys Phe Leu
Lys Thr Met Ile Lys Leu Phe 85 90 95Asn Arg Ile Asn Ser Lys Pro Ser
Gly Gln Arg Leu Leu Asp Met Ile 100 105 110Val Asp Ala Ile Pro Tyr
Leu Gly Asn Ala Ser Thr Pro Pro Asp Lys 115 120 125Phe Ala Ala Asn
Val Ala Asn Val Ser Ile Asn Lys Lys Ile Ile Gln 130 135 140Pro Gly
Ala Glu Asp Gln Ile Lys Gly Leu Met Thr Asn Leu Ile Ile145 150 155
160Phe Gly Pro Gly Pro Val Leu Ser Asp Asn Phe Thr Asp Ser Met Ile
165 170 175Met Asn Gly His Ser Pro Ile Ser Glu Gly Phe Gly Ala Arg
Met Met 180 185 190Ile Arg Phe Cys Pro Ser Cys Leu Asn Val Phe Asn
Asn Val Gln Glu 195 200 205Asn Lys Asp Thr Ser Ile Phe Ser Arg Arg
Ala Tyr Phe Ala Asp Pro 210 215 220Ala Leu Thr Leu Met His Glu Leu
Ile His Val Leu His Gly Leu Tyr225 230 235 240Gly Ile Lys Ile Ser
Asn Leu Pro Ile Thr Pro Asn Thr Lys Glu Phe 245 250 255Phe Met Gln
His Ser Asp Pro Val Gln Ala Glu Glu Leu Tyr Thr Phe 260 265 270Gly
Gly His Asp Pro Ser Val Ile Ser Pro Ser Thr Asp Met Asn Ile 275 280
285Tyr Asn Lys Ala Leu Gln Asn Phe Gln Asp Ile Ala Asn Arg Leu Asn
290 295 300Ile Val Ser Ser Ala Gln Gly Ser Gly Ile Asp Ile Ser Leu
Tyr Lys305 310 315 320Gln Ile Tyr Lys Asn Lys Tyr Asp Phe Val Glu
Asp Pro Asn Gly Lys 325 330 335Tyr Ser Val Asp Lys Asp Lys Phe Asp
Lys Leu Tyr Lys Ala Leu Met 340 345 350Phe Gly Phe Thr Glu Thr Asn
Leu Ala Gly Glu Tyr Gly Ile Lys Thr 355 360 365Arg Tyr Ser Tyr Phe
Ser Glu Tyr Leu Pro Pro Ile Lys Thr Glu Lys 370 375 380Leu Leu Asp
Asn Thr Ile Tyr Thr Gln Asn Glu Gly Phe Asn Ile Ala385 390 395
400Ser Lys Asn Leu Lys Thr Glu Phe Asn Gly Gln Asn Lys Ala Val Asn
405 410 415Lys Glu Ala Tyr Glu Glu Ile Ser Leu Glu His Leu Val Ile
Tyr Arg 420 425 430Ile Ala Met Cys Lys Pro Val Met Tyr Lys Asn Thr
Gly Lys Ser Glu 435 440 445Gln Cys Ile Ile Val Asn Asn Glu Asp Leu
Phe Phe Ile Ala Asn Lys 450 455 460Asp Ser Phe Ser Lys Asp Leu Ala
Lys Ala Glu Thr Ile Ala Tyr Asn465 470 475 480Thr Gln Asn Asn Thr
Ile Glu Asn Asn Phe Ser Ile Asp Gln Leu Ile 485 490 495Leu Asp Asn
Asp Leu Ser Ser Gly Ile Asp Leu Pro Asn Glu Asn Thr 500 505 510Glu
Pro Phe Thr Asn Phe Asp Asp Ile Asp Ile Pro Val Tyr Ile Lys 515 520
525Gln Ser Ala Leu Lys Lys Ile Phe Val Asp Gly Asp Ser Leu Phe Glu
530 535 540Tyr Leu His Ala Gln Thr Phe Pro Ser Asn Ile Glu Asn Leu
Gln Leu545 550 555 560Thr Asn Ser Leu Asn Asp Ala Leu Arg Asn Asn
Asn Lys Val Tyr Thr 565 570 575Phe Phe Ser Thr Asn Leu Val Glu Lys
Ala Asn Thr Val Val Gly Ala 580 585 590Ser Leu Phe Val Asn Trp Val
Lys Gly Val Ile Asp Asp Phe Thr Ser 595 600 605Glu Ser Thr Gln Lys
Ser Thr Ile Asp Lys Val Ser Asp Val Ser Ile 610 615 620Ile Ile Pro
Tyr Ile Gly Pro Ala Leu Asn Val Gly Asn Glu Thr Ala625 630 635
640Lys Glu Asn Phe Lys Asn Ala Phe Glu Ile Gly Gly Ala Ala Ile Leu
645 650 655Met Glu Phe Ile Pro Glu Leu Ile Val Pro Ile Val Gly Phe
Phe Thr 660 665 670Leu Glu Ser Tyr Val Gly Asn Lys Gly His Ile Ile
Met Thr Ile Ser 675 680 685Asn Ala Leu Lys Lys Arg Asp Gln Lys Trp
Thr Asp Met Tyr Gly Leu 690 695 700Ile Val Ser Gln Trp Leu Ser Thr
Val Asn Thr Gln Phe Tyr Thr Ile705 710 715 720Lys Glu Arg Met Tyr
Asn Ala Leu Asn Asn Gln Ser Gln Ala Ile Glu 725 730 735Lys Ile Ile
Glu Asp Gln Tyr Asn Arg Tyr Ser Glu Glu Asp Lys Met 740 745 750Asn
Ile Asn Ile Asp Phe Asn Asp Ile Asp Phe Lys Leu Asn Gln Ser 755 760
765Ile Asn Leu Ala Ile Asn Asn Ile Asp Asp Phe Ile Asn Gln Cys Ser
770 775 780Ile Ser Tyr Leu Met Asn Arg Met Ile Pro Leu Ala Val Lys
Lys Leu785 790 795 800Lys Asp Phe Asp Asp Asn Leu Lys Arg Asp Leu
Leu Glu Tyr Ile Asp 805 810 815Thr Asn Glu Leu Tyr Leu Leu Asp Glu
Val Asn Ile Leu Lys Ser Lys 820 825 830Val Asn Arg His Leu Lys Asp
Ser Ile Pro Phe Asp Leu Ser Leu Tyr 835 840 845Thr Lys Asp Thr Ile
Leu Ile Gln Val Phe Asn Asn Tyr Ile Ser Asn 850 855 860Ile Ser Ser
Asn Ala Ile Leu Ser Leu Ser Tyr Arg Gly Gly Arg Leu865
870 875 880Ile Asp Ser Ser Gly Tyr Gly Ala Thr Met Asn Val Gly Ser
Asp Val 885 890 895Ile Phe Asn Asp Ile Gly Asn Gly Gln Phe Lys Leu
Asn Asn Ser Glu 900 905 910Asn Ser Asn Ile Thr Ala His Gln Ser Lys
Phe Val Val Tyr Asp Ser 915 920 925Met Phe Asp Asn Phe Ser Ile Asn
Phe Trp Val Arg Thr Pro Lys Tyr 930 935 940Asn Asn Asn Asp Ile Gln
Thr Tyr Leu Gln Asn Glu Tyr Thr Ile Ile945 950 955 960Ser Cys Ile
Lys Asn Asp Ser Gly Trp Lys Val Ser Ile Lys Gly Asn 965 970 975Arg
Ile Ile Trp Thr Leu Ile Asp Val Asn Ala Lys Ser Lys Ser Ile 980 985
990Phe Phe Glu Tyr Ser Ile Lys Asp Asn Ile Ser Asp Tyr Ile Asn Lys
995 1000 1005Trp Phe Ser Ile Thr Ile Thr Asn Asp Arg Leu Gly Asn
Ala Asn 1010 1015 1020Ile Tyr Ile Asn Gly Ser Leu Lys Lys Ser Glu
Lys Ile Leu Asn 1025 1030 1035Leu Asp Arg Ile Asn Ser Ser Asn Asp
Ile Asp Phe Lys Leu Ile 1040 1045 1050Asn Cys Thr Asp Thr Thr Lys
Phe Val Trp Ile Lys Asp Phe Asn 1055 1060 1065Ile Phe Gly Arg Glu
Leu Asn Ala Thr Glu Val Ser Ser Leu Tyr 1070 1075 1080Trp Ile Gln
Ser Ser Thr Asn Thr Leu Lys Asp Phe Trp Gly Asn 1085 1090 1095Pro
Leu Arg Tyr Asp Thr Gln Tyr Tyr Leu Phe Asn Gln Gly Met 1100 1105
1110Gln Asn Ile Tyr Ile Lys Tyr Phe Ser Lys Ala Ser Met Gly Glu
1115 1120 1125Thr Ala Pro Arg Thr Asn Phe Asn Asn Ala Ala Ile Asn
Tyr Gln 1130 1135 1140Asn Leu Tyr Leu Gly Leu Arg Phe Ile Ile Lys
Lys Ala Ser Asn 1145 1150 1155Ser Arg Asn Ile Asn Asn Asp Asn Ile
Val Arg Glu Gly Asp Tyr 1160 1165 1170Ile Tyr Leu Asn Ile Asp Asn
Ile Ser Asp Glu Ser Tyr Arg Val 1175 1180 1185Tyr Val Leu Val Asn
Ser Lys Glu Ile Gln Thr Gln Leu Phe Leu 1190 1195 1200Ala Pro Ile
Asn Asp Asp Pro Thr Phe Tyr Asp Val Leu Gln Ile 1205 1210 1215Lys
Lys Tyr Tyr Glu Lys Thr Thr Tyr Asn Cys Gln Ile Leu Cys 1220 1225
1230Glu Lys Asp Thr Lys Thr Phe Gly Leu Phe Gly Ile Gly Lys Phe
1235 1240 1245Val Lys Asp Tyr Gly Tyr Val Trp Asp Thr Tyr Asp Asn
Tyr Phe 1250 1255 1260Cys Ile Ser Gln Trp Tyr Leu Arg Arg Ile Ser
Glu Asn Ile Asn 1265 1270 1275Lys Leu Arg Leu Gly Cys Asn Trp Gln
Phe Ile Pro Val Asp Glu 1280 1285 1290Gly Trp Thr Glu
12951461315PRTClostridium tetani 146Met Pro Ile Thr Ile Asn Asn Phe
Arg Tyr Ser Asp Pro Val Asn Asn1 5 10 15Asp Thr Ile Ile Met Met Glu
Pro Pro Tyr Cys Lys Gly Leu Asp Ile 20 25 30Tyr Tyr Lys Ala Phe Lys
Ile Thr Asp Arg Ile Trp Ile Val Pro Glu 35 40 45Arg Tyr Glu Phe Gly
Thr Lys Pro Glu Asp Phe Asn Pro Pro Ser Ser 50 55 60Leu Ile Glu Gly
Ala Ser Glu Tyr Tyr Asp Pro Asn Tyr Leu Arg Thr65 70 75 80Asp Ser
Asp Lys Asp Arg Phe Leu Gln Thr Met Val Lys Leu Phe Asn 85 90 95Arg
Ile Lys Asn Asn Val Ala Gly Glu Ala Leu Leu Asp Lys Ile Ile 100 105
110Asn Ala Ile Pro Tyr Leu Gly Asn Ser Tyr Ser Leu Leu Asp Lys Phe
115 120 125Asp Thr Asn Ser Asn Ser Val Ser Phe Asn Leu Leu Glu Gln
Asp Pro 130 135 140Ser Gly Ala Thr Thr Lys Ser Ala Met Leu Thr Asn
Leu Ile Ile Phe145 150 155 160Gly Pro Gly Pro Val Leu Asn Lys Asn
Glu Val Arg Gly Ile Val Leu 165 170 175Arg Val Asp Asn Lys Asn Tyr
Phe Pro Cys Arg Asp Gly Phe Gly Ser 180 185 190Ile Met Gln Met Ala
Phe Cys Pro Glu Tyr Val Pro Thr Phe Asp Asn 195 200 205Val Ile Glu
Asn Ile Thr Ser Leu Thr Ile Gly Lys Ser Lys Tyr Phe 210 215 220Gln
Asp Pro Ala Leu Leu Leu Met His Glu Leu Ile His Val Leu His225 230
235 240Gly Leu Tyr Gly Met Gln Val Ser Ser His Glu Ile Ile Pro Ser
Lys 245 250 255Gln Glu Ile Tyr Met Gln His Thr Tyr Pro Ile Ser Ala
Glu Glu Leu 260 265 270Phe Thr Phe Gly Gly Gln Asp Ala Asn Leu Ile
Ser Ile Asp Ile Lys 275 280 285Asn Asp Leu Tyr Glu Lys Thr Leu Asn
Asp Tyr Lys Ala Ile Ala Asn 290 295 300Lys Leu Ser Gln Val Thr Ser
Cys Asn Asp Pro Asn Ile Asp Ile Asp305 310 315 320Ser Tyr Lys Gln
Ile Tyr Gln Gln Lys Tyr Gln Phe Asp Lys Asp Ser 325 330 335Asn Gly
Gln Tyr Ile Val Asn Glu Asp Lys Phe Gln Ile Leu Tyr Asn 340 345
350Ser Ile Met Tyr Gly Phe Thr Glu Ile Glu Leu Gly Lys Lys Phe Asn
355 360 365Ile Lys Thr Arg Leu Ser Tyr Phe Ser Met Asn His Asp Pro
Val Lys 370 375 380Ile Pro Asn Leu Leu Asp Asp Thr Ile Tyr Asn Asp
Thr Glu Gly Phe385 390 395 400Asn Ile Glu Ser Lys Asp Leu Lys Ser
Glu Tyr Lys Gly Gln Asn Met 405 410 415Arg Val Asn Thr Asn Ala Phe
Arg Asn Val Asp Gly Ser Gly Leu Val 420 425 430Ser Lys Leu Ile Gly
Leu Cys Lys Lys Ile Ile Pro Pro Thr Asn Ile 435 440 445Arg Glu Asn
Leu Tyr Asn Arg Thr Ala Ser Leu Thr Asp Leu Gly Gly 450 455 460Glu
Leu Cys Ile Lys Ile Lys Asn Glu Asp Leu Thr Phe Ile Ala Glu465 470
475 480Lys Asn Ser Phe Ser Glu Glu Pro Phe Gln Asp Glu Ile Val Ser
Tyr 485 490 495Asn Thr Lys Asn Lys Pro Leu Asn Phe Asn Tyr Ser Leu
Asp Lys Ile 500 505 510Ile Val Asp Tyr Asn Leu Gln Ser Lys Ile Thr
Leu Pro Asn Asp Arg 515 520 525Thr Thr Pro Val Thr Lys Gly Ile Pro
Tyr Ala Pro Glu Tyr Lys Ser 530 535 540Asn Ala Ala Ser Thr Ile Glu
Ile His Asn Ile Asp Asp Asn Thr Ile545 550 555 560Tyr Gln Tyr Leu
Tyr Ala Gln Lys Ser Pro Thr Thr Leu Gln Arg Ile 565 570 575Thr Met
Thr Asn Ser Val Asp Asp Ala Leu Ile Asn Ser Thr Lys Ile 580 585
590Tyr Ser Tyr Phe Pro Ser Val Ile Ser Lys Val Asn Gln Gly Ala Gln
595 600 605Gly Ile Leu Phe Leu Gln Trp Val Arg Asp Ile Ile Asp Asp
Phe Thr 610 615 620Asn Glu Ser Ser Gln Lys Thr Thr Ile Asp Lys Ile
Ser Asp Val Ser625 630 635 640Thr Ile Val Pro Tyr Ile Gly Pro Ala
Leu Asn Ile Val Lys Gln Gly 645 650 655Tyr Glu Gly Asn Phe Ile Gly
Ala Leu Glu Thr Thr Gly Val Val Leu 660 665 670Leu Leu Glu Tyr Ile
Pro Glu Ile Thr Leu Pro Val Ile Ala Ala Leu 675 680 685Ser Ile Ala
Glu Ser Ser Thr Gln Lys Glu Lys Ile Ile Lys Thr Ile 690 695 700Asp
Asn Phe Leu Glu Lys Arg Tyr Glu Lys Trp Ile Glu Val Tyr Lys705 710
715 720Leu Val Lys Ala Lys Trp Leu Gly Thr Val Asn Thr Gln Phe Gln
Lys 725 730 735Arg Ser Tyr Gln Met Tyr Arg Ser Leu Glu Tyr Gln Val
Asp Ala Ile 740 745 750Lys Lys Ile Ile Asp Tyr Glu Tyr Lys Ile Tyr
Ser Gly Pro Asp Lys 755 760 765Glu Gln Ile Ala Asp Glu Ile Asn Asn
Leu Lys Asn Lys Leu Glu Glu 770 775 780Lys Ala Asn Lys Ala Met Ile
Asn Ile Asn Ile Phe Met Arg Glu Ser785 790 795 800Ser Arg Ser Phe
Leu Val Asn Gln Met Ile Asn Glu Ala Lys Lys Gln 805 810 815Leu Leu
Glu Phe Asp Thr Gln Ser Lys Asn Ile Leu Met Gln Tyr Ile 820 825
830Lys Ala Asn Ser Lys Phe Ile Gly Ile Thr Glu Leu Lys Lys Leu Glu
835 840 845Ser Lys Ile Asn Lys Val Phe Ser Thr Pro Ile Pro Phe Ser
Tyr Ser 850 855 860Lys Asn Leu Asp Cys Trp Val Asp Asn Glu Glu Asp
Ile Asp Val Ile865 870 875 880Leu Lys Lys Ser Thr Ile Leu Asn Leu
Asp Ile Asn Asn Asp Ile Ile 885 890 895Ser Asp Ile Ser Gly Phe Asn
Ser Ser Val Ile Thr Tyr Pro Asp Ala 900 905 910Gln Leu Val Pro Gly
Ile Asn Gly Lys Ala Ile His Leu Val Asn Asn 915 920 925Glu Ser Ser
Glu Val Ile Val His Lys Ala Met Asp Ile Glu Tyr Asn 930 935 940Asp
Met Phe Asn Asn Phe Thr Val Ser Phe Trp Leu Arg Val Pro Lys945 950
955 960Val Ser Ala Ser His Leu Glu Gln Tyr Gly Thr Asn Glu Tyr Ser
Ile 965 970 975Ile Ser Ser Met Lys Lys His Ser Leu Ser Ile Gly Ser
Gly Trp Ser 980 985 990Val Ser Leu Lys Gly Asn Asn Leu Ile Trp Thr
Leu Lys Asp Ser Ala 995 1000 1005Gly Glu Val Arg Gln Ile Thr Phe
Arg Asp Leu Pro Asp Lys Phe 1010 1015 1020Asn Ala Tyr Leu Ala Asn
Lys Trp Val Phe Ile Thr Ile Thr Asn 1025 1030 1035Asp Arg Leu Ser
Ser Ala Asn Leu Tyr Ile Asn Gly Val Leu Met 1040 1045 1050Gly Ser
Ala Glu Ile Thr Gly Leu Gly Ala Ile Arg Glu Asp Asn 1055 1060
1065Asn Ile Thr Leu Lys Leu Asp Arg Cys Asn Asn Asn Asn Gln Tyr
1070 1075 1080Val Ser Ile Asp Lys Phe Arg Ile Phe Cys Lys Ala Leu
Asn Pro 1085 1090 1095Lys Glu Ile Glu Lys Leu Tyr Thr Ser Tyr Leu
Ser Ile Thr Phe 1100 1105 1110Leu Arg Asp Phe Trp Gly Asn Pro Leu
Arg Tyr Asp Thr Glu Tyr 1115 1120 1125Tyr Leu Ile Pro Val Ala Ser
Ser Ser Lys Asp Val Gln Leu Lys 1130 1135 1140Asn Ile Thr Asp Tyr
Met Tyr Leu Thr Asn Ala Pro Ser Tyr Thr 1145 1150 1155Asn Gly Lys
Leu Asn Ile Tyr Tyr Arg Arg Leu Tyr Asn Gly Leu 1160 1165 1170Lys
Phe Ile Ile Lys Arg Tyr Thr Pro Asn Asn Glu Ile Asp Ser 1175 1180
1185Phe Val Lys Ser Gly Asp Phe Ile Lys Leu Tyr Val Ser Tyr Asn
1190 1195 1200Asn Asn Glu His Ile Val Gly Tyr Pro Lys Asp Gly Asn
Ala Phe 1205 1210 1215Asn Asn Leu Asp Arg Ile Leu Arg Val Gly Tyr
Asn Ala Pro Gly 1220 1225 1230Ile Pro Leu Tyr Lys Lys Met Glu Ala
Val Lys Leu Arg Asp Leu 1235 1240 1245Lys Thr Tyr Ser Val Gln Leu
Lys Leu Tyr Asp Asp Lys Asn Ala 1250 1255 1260Ser Leu Gly Leu Val
Gly Thr His Asn Gly Gln Ile Gly Asn Asp 1265 1270 1275Pro Asn Arg
Asp Ile Leu Ile Ala Ser Asn Trp Tyr Phe Asn His 1280 1285 1290Leu
Lys Asp Lys Ile Leu Gly Cys Asp Trp Tyr Phe Val Pro Thr 1295 1300
1305Asp Glu Gly Trp Thr Asn Asp 1310 1315147567PRTCorynephage beta
147Met Leu Val Arg Gly Tyr Val Val Ser Arg Lys Leu Phe Ala Ser Ile1
5 10 15Leu Ile Gly Ala Leu Leu Gly Ile Gly Ala Pro Pro Ser Ala His
Ala 20 25 30Gly Ala Asp Asp Val Val Asp Ser Ser Lys Ser Phe Val Met
Glu Asn 35 40 45Phe Ser Ser Tyr His Gly Thr Lys Pro Gly Tyr Val Asp
Ser Ile Gln 50 55 60Lys Gly Ile Gln Lys Pro Lys Ser Gly Thr Gln Gly
Asn Tyr Asp Asp65 70 75 80Asp Trp Lys Gly Phe Tyr Ser Thr Asp Asn
Lys Tyr Asp Ala Ala Gly 85 90 95Tyr Ser Val Asp Asn Glu Asn Pro Leu
Ser Gly Lys Ala Gly Gly Val 100 105 110Val Lys Val Thr Tyr Pro Gly
Leu Thr Lys Val Leu Ala Leu Lys Val 115 120 125Asp Asn Ala Glu Thr
Ile Lys Lys Glu Leu Gly Leu Ser Leu Thr Glu 130 135 140Pro Leu Met
Glu Gln Val Gly Thr Glu Glu Phe Ile Lys Arg Phe Gly145 150 155
160Asp Gly Ala Ser Arg Val Val Leu Ser Leu Pro Phe Ala Glu Gly Ser
165 170 175Ser Ser Val Glu Tyr Ile Asn Asn Trp Glu Gln Ala Lys Ala
Leu Ser 180 185 190Val Glu Leu Glu Ile Asn Phe Glu Thr Arg Gly Lys
Arg Gly Gln Asp 195 200 205Ala Met Tyr Glu Tyr Met Ala Gln Ala Cys
Ala Gly Asn Arg Val Arg 210 215 220Arg Ser Val Gly Ser Ser Leu Ser
Cys Ile Asn Leu Asp Trp Asp Val225 230 235 240Ile Arg Asp Lys Thr
Lys Thr Lys Ile Glu Ser Leu Lys Glu His Gly 245 250 255Pro Ile Lys
Asn Lys Met Ser Glu Ser Pro Asn Lys Thr Val Ser Glu 260 265 270Glu
Lys Ala Lys Gln Tyr Leu Glu Glu Phe His Gln Thr Ala Leu Glu 275 280
285His Pro Glu Leu Ser Glu Leu Lys Thr Val Thr Gly Thr Asn Pro Val
290 295 300Phe Ala Gly Ala Asn Tyr Ala Ala Trp Ala Val Asn Val Ala
Gln Val305 310 315 320Ile Asp Ser Glu Thr Ala Asp Asn Leu Glu Lys
Thr Thr Ala Ala Leu 325 330 335Ser Ile Leu Pro Gly Ile Gly Ser Val
Met Gly Ile Ala Asp Gly Ala 340 345 350Val His His Asn Thr Glu Glu
Ile Val Ala Gln Ser Ile Ala Leu Ser 355 360 365Ser Leu Met Val Ala
Gln Ala Ile Pro Leu Val Gly Glu Leu Val Asp 370 375 380Ile Gly Phe
Ala Ala Tyr Asn Phe Val Glu Ser Ile Ile Asn Leu Phe385 390 395
400Gln Val Val His Asn Ser Tyr Asn Arg Pro Ala Tyr Ser Pro Gly His
405 410 415Lys Thr Gln Pro Phe Leu His Asp Gly Tyr Ala Val Ser Trp
Asn Thr 420 425 430Val Glu Asp Ser Ile Ile Arg Thr Gly Phe Gln Gly
Glu Ser Gly His 435 440 445Asp Ile Lys Ile Thr Ala Glu Asn Thr Pro
Leu Pro Ile Ala Gly Val 450 455 460Leu Leu Pro Thr Ile Pro Gly Lys
Leu Asp Val Asn Lys Ser Lys Thr465 470 475 480His Ile Ser Val Asn
Gly Arg Lys Ile Arg Met Arg Cys Arg Ala Ile 485 490 495Asp Gly Asp
Val Thr Phe Cys Arg Pro Lys Ser Pro Val Tyr Val Gly 500 505 510Asn
Gly Val His Ala Asn Leu His Val Ala Phe His Arg Ser Ser Ser 515 520
525Glu Lys Ile His Ser Asn Glu Ile Ser Ser Asp Ser Ile Gly Val Leu
530 535 540Gly Tyr Gln Lys Thr Val Asp His Thr Lys Val Asn Ser Lys
Leu Ser545 550 555 560Leu Phe Phe Glu Ile Lys Ser
565148638PRTPseudomonas aeruginosa 148Met His Leu Thr Pro His Trp
Ile Pro Leu Val Ala Ser Leu Gly Leu1 5 10 15Leu Ala Gly Gly Ser Phe
Ala Ser Ala Ala Glu Glu Ala Phe Asp Leu 20 25 30Trp Asn Glu Cys Ala
Lys Ala Cys Val Leu Asp Leu Lys Asp Gly Val 35 40 45Arg Ser Ser Arg
Met Ser Val Asp Pro Ala Ile Ala Asp Thr Asn Gly 50 55 60Gln Gly Val
Leu His Tyr Ser Met Val Leu Glu Gly Gly Asn Asp Ala65 70 75 80Leu
Lys Leu Ala Ile Asp Asn Ala Leu Ser Ile Thr Ser Asp Gly Leu 85 90
95Thr Ile Arg Leu Glu Gly Gly Val Glu Pro Asn Lys Pro Val Arg Tyr
100 105 110Ser Tyr Thr Arg Gln Ala Arg Gly Ser Trp Ser Leu Asn Trp
Leu Val 115 120 125Pro Ile Gly His Glu Lys Pro Ser Asn Ile Lys Val
Phe Ile His Glu 130 135 140Leu Asn
Ala Gly Asn Gln Leu Ser His Met Ser Pro Ile Tyr Thr Ile145 150 155
160Glu Met Gly Asp Glu Leu Leu Ala Lys Leu Ala Arg Asp Ala Thr Phe
165 170 175Phe Val Arg Ala His Glu Ser Asn Glu Met Gln Pro Thr Leu
Ala Ile 180 185 190Ser His Ala Gly Val Ser Val Val Met Ala Gln Ala
Gln Pro Arg Arg 195 200 205Glu Lys Arg Trp Ser Glu Trp Ala Ser Gly
Lys Val Leu Cys Leu Leu 210 215 220Asp Pro Leu Asp Gly Val Tyr Asn
Tyr Leu Ala Gln Gln Arg Cys Asn225 230 235 240Leu Asp Asp Thr Trp
Glu Gly Lys Ile Tyr Arg Val Leu Ala Gly Asn 245 250 255Pro Ala Lys
His Asp Leu Asp Ile Lys Pro Thr Val Ile Ser His Arg 260 265 270Leu
His Phe Pro Glu Gly Gly Ser Leu Ala Ala Leu Thr Ala His Gln 275 280
285Ala Cys His Leu Pro Leu Glu Thr Phe Thr Arg His Arg Gln Pro Arg
290 295 300Gly Trp Glu Gln Leu Glu Gln Cys Gly Tyr Pro Val Gln Arg
Leu Val305 310 315 320Ala Leu Tyr Leu Ala Ala Arg Leu Ser Trp Asn
Gln Val Asp Gln Val 325 330 335Ile Arg Asn Ala Leu Ala Ser Pro Gly
Ser Gly Gly Asp Leu Gly Glu 340 345 350Ala Ile Arg Glu Gln Pro Glu
Gln Ala Arg Leu Ala Leu Thr Leu Ala 355 360 365Ala Ala Glu Ser Glu
Arg Phe Val Arg Gln Gly Thr Gly Asn Asp Glu 370 375 380Ala Gly Ala
Ala Ser Ala Asp Val Val Ser Leu Thr Cys Pro Val Ala385 390 395
400Ala Gly Glu Cys Ala Gly Pro Ala Asp Ser Gly Asp Ala Leu Leu Glu
405 410 415Arg Asn Tyr Pro Thr Gly Ala Glu Phe Leu Gly Asp Gly Gly
Asp Ile 420 425 430Ser Phe Ser Thr Arg Gly Thr Gln Asn Trp Thr Val
Glu Arg Leu Leu 435 440 445Gln Ala His Arg Gln Leu Glu Glu Arg Gly
Tyr Val Phe Val Gly Tyr 450 455 460His Gly Thr Phe Leu Glu Ala Ala
Gln Ser Ile Val Phe Gly Gly Val465 470 475 480Arg Ala Arg Ser Gln
Asp Leu Asp Ala Ile Trp Arg Gly Phe Tyr Ile 485 490 495Ala Gly Asp
Pro Ala Leu Ala Tyr Gly Tyr Ala Gln Asp Gln Glu Pro 500 505 510Asp
Ala Arg Gly Arg Ile Arg Asn Gly Ala Leu Leu Arg Val Tyr Val 515 520
525Pro Arg Ser Ser Leu Pro Gly Phe Tyr Arg Thr Gly Leu Thr Leu Ala
530 535 540Ala Pro Glu Ala Ala Gly Glu Val Glu Arg Leu Ile Gly His
Pro Leu545 550 555 560Pro Leu Arg Leu Asp Ala Ile Thr Gly Pro Glu
Glu Glu Gly Gly Arg 565 570 575Leu Glu Thr Ile Leu Gly Trp Pro Leu
Ala Glu Arg Thr Val Val Ile 580 585 590Pro Ser Ala Ile Pro Thr Asp
Pro Arg Asn Val Gly Gly Asp Leu Asp 595 600 605Pro Ser Ser Ile Pro
Asp Lys Glu Gln Ala Ile Ser Ala Leu Pro Asp 610 615 620Tyr Ala Ser
Gln Pro Gly Lys Pro Pro Arg Glu Asp Leu Lys625 630
63514919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 149Gly Glu Phe Val Met Asn Ala Ala Asn Ala Gln
Gly His Thr Ala Gly1 5 10 15Thr Arg Leu15010PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 150Thr
Gln Ile Glu Asn Leu Lys Glu Lys Gly1 5 101515PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 151Cys
Ser Lys Cys Gly1 51528PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 152Cys Phe Thr Lys Trp Phe
Phe Cys1 51538PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptide 153Thr Phe Thr Lys Trp Phe Phe Phe1
515425DNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 154gccagacuuu guuggauuug aaatt
2515527RNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 155aauuucaaau ccaacaaagu cuggcuu
2715625DNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 156ggagggcuuu cuuuguguau uugcc
2515727RNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 157ggcaaauaca caaagaaagc ccucccc
271588PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 158Arg Arg Arg Arg Arg Arg Arg Arg1
51599PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 159Arg Arg Arg Arg Arg Arg Arg Arg Arg1
516085PRTArtificial SequenceDescription of Artificial Sequence
Synthetic polypeptide 160Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa1 5 10 15Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa 20 25 30Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Phe Xaa Tyr Gly Gly Xaa Xaa Xaa 35 40 45Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa 50 55 60Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa65 70 75 80Xaa Xaa Xaa Xaa
Xaa 8516119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 161Gly Lys Ser Val Lys Ala Pro Gly Ile Gly Gly
Lys Ser Val Lys Ala1 5 10 15Pro Gly Ile
* * * * *