U.S. patent application number 17/682655 was filed with the patent office on 2022-06-16 for methods for modulating chemotherapeutic cytotoxicity.
This patent application is currently assigned to The United States of America, as represented by the Secretary, Dept. of Health and Human Services. The applicant listed for this patent is The United States of America, as represented by the Secretary, Dept. of Health and Human Services, The United States of America, as represented by the Secretary, Dept. of Health and Human Services. Invention is credited to David D. Roberts, David R. Soto Pantoja.
Application Number | 20220184111 17/682655 |
Document ID | / |
Family ID | 1000006170167 |
Filed Date | 2022-06-16 |
United States Patent
Application |
20220184111 |
Kind Code |
A1 |
Roberts; David D. ; et
al. |
June 16, 2022 |
METHODS FOR MODULATING CHEMOTHERAPEUTIC CYTOTOXICITY
Abstract
Disclosed herein are methods of reducing cytotoxicity of a
chemotherapeutic agent to non-cancer cells by administering to a
subject with cancer an effective amount of an agent that inhibits
CD47 signaling and a chemotherapeutic agent. Example disclosed
methods reduce cardiotoxicity of a chemotherapeutic agent. Also
disclosed are methods of increasing cytotoxicity of a
chemotherapeutic agent in cancer cells by administering to a
subject with a tumor an effective amount of an agent that inhibits
CD47 signaling and a chemotherapeutic agent. In some embodiments,
the inhibitor of CD47 signaling is administered to the subject
before, during, or after the administration of the chemotherapeutic
agent.
Inventors: |
Roberts; David D.;
(Bethesda, MD) ; Soto Pantoja; David R.;
(Rockville, MD) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
The United States of America, as represented by the Secretary,
Dept. of Health and Human Services |
Bethesda |
MD |
US |
|
|
Assignee: |
The United States of America, as
represented by the Secretary, Dept. of Health and Human
Services
Bethesda
MD
|
Family ID: |
1000006170167 |
Appl. No.: |
17/682655 |
Filed: |
February 28, 2022 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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14775428 |
Sep 11, 2015 |
11285169 |
|
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PCT/US14/25989 |
Mar 13, 2014 |
|
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17682655 |
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61779587 |
Mar 13, 2013 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
A61K 31/711 20130101;
A61K 31/7064 20130101; A61P 35/00 20180101; A61K 31/505 20130101;
A61K 31/65 20130101; A61P 39/00 20180101; A61K 31/137 20130101;
A61K 31/712 20130101; A61K 31/704 20130101; A61K 31/52 20130101;
A61K 31/706 20130101; A61K 31/513 20130101; A61K 31/351 20130101;
A61K 39/39558 20130101; A61K 31/365 20130101; C07K 16/2803
20130101; A61K 31/437 20130101; A61K 31/713 20130101; A61K 31/787
20130101; A61K 45/06 20130101 |
International
Class: |
A61K 31/713 20060101
A61K031/713; A61K 31/704 20060101 A61K031/704; A61K 31/52 20060101
A61K031/52; A61K 31/137 20060101 A61K031/137; A61K 31/365 20060101
A61K031/365; A61K 31/65 20060101 A61K031/65; A61K 31/706 20060101
A61K031/706; A61K 39/395 20060101 A61K039/395; A61K 31/711 20060101
A61K031/711; A61K 31/7064 20060101 A61K031/7064; A61K 31/437
20060101 A61K031/437; A61K 31/505 20060101 A61K031/505; A61K 31/712
20060101 A61K031/712; C07K 16/28 20060101 C07K016/28; A61P 39/00
20060101 A61P039/00; A61K 31/351 20060101 A61K031/351; A61K 31/787
20060101 A61K031/787; A61P 35/00 20060101 A61P035/00; A61K 31/513
20060101 A61K031/513; A61K 45/06 20060101 A61K045/06 |
Claims
1. A method of reducing cytotoxicity of an anthracycline, a
topoisomerase inhibitor, or a nucleotide synthesis inhibitor to
non-cancer cells in a subject in need thereof, comprising
administering to the subject an effective amount of: an agent that
inhibits TSP1-dependent CD47 signaling, wherein the agent that
inhibits TSP1-dependent CD47 signaling is an anti-CD47 antibody;
and the anthracycline, the topoisomerase inhibitor, or the
nucleotide synthesis inhibitor, wherein the agent that inhibits
TSP1-dependent CD47 signaling is administered to the subject
before, during, or after administration of the anthracycline, the
topoisomerase inhibitor, or the nucleotide synthesis inhibitor.
2. The method of claim 1, wherein the anthracycline is doxorubicin,
daunorubicin, epirubicin, idarubicin, or valrubicin.
3. The method of claim 1, wherein the nucleotide synthesis
inhibitor is cladribine, clofarabine, fludarabine, mercaptopurine,
thioguanine, pentostatin, capecitabine, cytarabine, 5-fluorouracil,
floxuridine, or gemcitabine.
4. The method of claim 1, wherein the topoisomerase inhibitor is
camptothecin, topotecan, irinotecan, or etoposide.
5. The method of claim 1, wherein the anti-CD47 antibody is
anti-human CD47 antibody B6H12.
6. The method of claim 1, wherein the subject has breast cancer,
lung cancer, ovarian cancer, prostate cancer, thyroid cancer,
bladder cancer, stomach cancer, multiple myeloma, soft tissue
sarcoma, leukemia, or lymphoma.
7. The method of claim 1, wherein the cytotoxicity of the
anthracycline, the topoisomerase inhibitor, or the nucleotide
synthesis inhibitor to non-cancer cells is cardiotoxicity,
nephrotoxicity, hepatotoxicity, myelosuppression, alopecia,
gastrointestinal distress, or peripheral neuropathy.
8. The method of claim 1, wherein the agent that inhibits
TSP1-dependent CD47 signaling is administered to the subject prior
to administration of the anthracycline, the topoisomerase
inhibitor, or the nucleotide synthesis inhibitor.
9. The method of claim 8, wherein the agent that inhibits
TSP1-dependent CD47 signaling is administered to the subject at
least about 24 hours prior to administration of the anthracycline,
the topoisomerase inhibitor, or the nucleotide synthesis inhibitor
or at least about 48 hours prior to the administration of the
anthracycline, the topoisomerase inhibitor, or the nucleotide
synthesis inhibitor.
10. The method of claim 1, further comprising detecting
cytotoxicity to non-cancer cells in the subject by detecting a
reduction or inhibition of cardiotoxicity in the subject compared
to a control.
11. The method of claim 1, further comprising selecting a subject
who is at risk for cytotoxicity of the anthracycline, the
topoisomerase inhibitor, or the nucleotide synthesis inhibitor to
non-cancer cells for administration of the agent that inhibits
TSP1-dependent CD47 signaling and the anthracycline, the
topoisomerase inhibitor, or the nucleotide synthesis inhibitor,
wherein the subject has pre-existing heart disease, hypertension,
previous mediastinal irradiation, female gender, and/or age less
than 4 years, or the subject has received a cumulative dose of
greater than 400 mg/m.sup.2 and/or administration of an
anthracycline at more than 50 mg/m.sup.2 dose per day.
12. A method of reducing cytotoxicity of an anthracycline, a
topoisomerase inhibitor, or a nucleotide synthesis inhibitor to
non-cancer cells in a subject in need thereof, comprising: (a)
administering to the subject an agent that inhibits TSP1-depedent
CD47 signaling, wherein the agent that inhibits TSP1-dependent CD47
signaling is an anti-CD47 antibody; (b) administering the
anthracycline, the topoisomerase inhibitor, or the nucleotide
synthesis inhibitor to the subject, wherein (a) and (b) can be
performed in either order or concurrently; and (c) detecting a
reduction of cytotoxicity to non-cancer cells in the subject by
detecting a reduction or inhibition of cardiotoxicity,
nephrotoxicity, hepatotoxicity, myelosuppression, alopecia,
gastrointestinal distress, or peripheral neuropathy in the subject
compared to a control.
13. The method of claim 12, further comprising selecting a subject
who is at risk for cytotoxicity of the DNA damaging agent to
non-cancer cells for administration of the agent that inhibits
TSP1-dependent CD47 signaling and the anthracycline, the
topoisomerase inhibitor, or the nucleotide synthesis inhibitor,
wherein the subject has pre-existing heart disease, hypertension,
previous mediastinal irradiation, female gender, and/or age less
than 4 years, or the subject has received a cumulative dose of
greater than 400 mg/m.sup.2 and/or administration of an
anthracycline at more than 50 mg/m.sup.2 dose per day.
14. A method of increasing cytotoxicity of an anthracycline, a
topoisomerase inhibitor, or a nucleotide synthesis inhibitor to
cancer cells in a subject in need thereof, comprising administering
to a subject with cancer an effective amount of: an agent that
inhibits TSP1-dependent CD47 signaling, wherein the agent that
inhibits TSP1-dependent CD47 signaling is an anti-CD47 antibody;
and the anthracycline, the topoisomerase inhibitor, or the
nucleotide synthesis inhibitor, wherein the agent that inhibits
TSP1-dependent CD47 signaling is administered to the subject
before, during, or after administration of the anthracycline, the
topoisomerase inhibitor, or the nucleotide synthesis inhibitor.
15. The method of claim 14, wherein the agent that inhibits
TSP1-dependent CD47 signaling is administered to the subject prior
to administration of the anthracycline, the topoisomerase
inhibitor, or the nucleotide synthesis inhibitor.
16. The method of claim 14, wherein increasing cytotoxicity of the
anthracycline, the topoisomerase inhibitor, or the nucleotide
synthesis inhibitor to cancer cells comprises decreasing tumor
size, decreasing tumor number, decreasing tumor metastasis,
decreasing tumor recurrence, increasing survival, or any
combination of two or more thereof.
17. The method of claim 14, wherein the anthracycline is
doxorubicin, daunorubicin, epirubicin, idarubicin, or
valrubicin.
18. The method of claim 14, wherein the nucleotide synthesis
inhibitor is cladribine, clofarabine, fludarabine, mercaptopurine,
thioguanine, pentostatin, capecitabine, cytarabine, 5-fluorouracil,
floxuridine, or gemcitabine.
19. The method of claim 14, wherein the topoisomerase inhibitor is
camptothecin, topotecan, irinotecan, or etoposide.
20. The method of claim 14, wherein the anti-CD47 antibody is
anti-human CD47 antibody B6H12.
Description
CROSS REFERENCE TO RELATED APPLICATION
[0001] This is a divisional of U.S. application Ser. No.
14/775,428, filed Sep. 11, 2015, which is the .sctn. 371 U.S.
National Stage of International Application No. PCT/US2014/025989,
filed Mar. 13, 2014, which was published in English under PCT
Article 21(2), which in turn claims the benefit of U.S. Provisional
Application No. 61/779,587, filed Mar. 13, 2013, which is
incorporated by reference herein in its entirety.
FIELD
[0002] This disclosure relates to methods of modulating
cytotoxicity of chemotherapeutic agents, particularly reducing
cytotoxicity of chemotherapeutic agents to non-cancer cells and/or
increasing cytotoxicity of chemotherapeutic agents to cancer
cells.
BACKGROUND
[0003] Traditional chemotherapeutic agents act by killing rapidly
dividing cells, as is typical of cancer cells.
[0004] However, this means that chemotherapy also damages or kills
non-cancer cells that are rapidly dividing (such as cells in bone
marrow, the digestive tract, and hair follicles) and this is
responsible for many of the side effects of chemotherapy. Many
chemotherapy agents damage DNA, for example by intercalating into
DNA, interfering with DNA synthesis or replication, or by causing
oxidative damage to DNA. For example, DNA intercalating agents such
as anthracyclines are widely used in cancer chemotherapy. Even
though DNA intercalating agent-based therapies are effective in the
treatment of a wide array of cancers, administration of these
agents is accompanied by harmful side effects, mainly damaging
replicating cells in normal tissue.
[0005] Although chemotherapeutic treatment is widely used and
effective, it is limited by its detrimental side effects,
particularly cardiac toxicity. These toxicities limit the
cumulative dose of many chemotherapeutics (particularly
anthracyclines) that can safely be administered to a patient. To
overcome cardiotoxicity, researchers have introduced modifications
to the structure of many chemotherapeutics, but these either
decrease efficacy or do not improve the side effect profile.
Therefore, the off-target effects of these agents limit their use
and there is a continuing need for alternative agents or treatment
regimens that can be used in the treatment of diverse cancers to
improve survival and quality of life for those with cancer.
SUMMARY
[0006] It has surprisingly been discovered that inhibition of CD47
signaling modulates cytotoxic effects of chemotherapeutic agents.
In particular, cytotoxicity of chemotherapeutic agents to
non-cancer cells (e.g., non-tumor cells) can be dramatically
decreased through inhibition of CD47 signaling. This effect is
specific to non-cancer cells. Moreover, it has also been discovered
that inhibition of CD47 signaling increases the cytotoxicity of
chemotherapeutic agents to cancer cells in a subject being treated
with chemotherapy. In some embodiments, CD47 signaling blockade
reduces cytotoxicity to non-cancer cells and/or increases
cytotoxicity to cancer cells of chemotherapeutic agents,
particularly those that damage DNA (for example, directly or
through interfering with DNA synthesis or replication) or that
cause oxidative damage to cells.
[0007] Disclosed herein are methods of reducing cytotoxicity of a
chemotherapeutic agent to non-cancer cells by administering to a
subject with cancer an effective amount of an agent that inhibits
CD47 signaling and one or more chemotherapeutic agents. In some
embodiments, the inhibitor of CD47 signaling is administered to the
subject before, during, or after the administration of the
chemotherapeutic agent(s). In some examples, administering to a
subject with cancer an effective amount of an agent that inhibits
CD47 signaling and a chemotherapeutic agent reduces cardiotoxicity
of the chemotherapeutic agent in the subject.
[0008] Also disclosed are methods of increasing cytotoxicity of a
chemotherapeutic agent to cancer cells or a tumor by administering
to a subject with a tumor an effective amount of an agent that
inhibits CD47 signaling and a chemotherapeutic agent. In some
examples, the inhibitor of CD47 signaling is administered to the
subject before, during, or after the administration of the
chemotherapeutic agent (for example, a DNA damaging
chemotherapeutic agent).
[0009] In various embodiments, the agent that inhibits CD47
signaling includes a CD47-binding peptide; a thrombospondin 1
(TSP1)-binding peptide; a CD47 antisense oligonucleotide (such as a
CD47 morpholino); a TSP1 antisense oligonucleotide; an anti-CD47
antibody or a fragment thereof, an anti-TSP1 antibody or a fragment
thereof; an isolated or recombinant CD47 or TSP1 molecule or
soluble fragment thereof, or molecule that binds thereto; an agent
that decreases the expression of CD47 or TSP; a small molecule
capable of binding to CD47; a small molecule capable of binding to
TSP1 ; or a mixture of two or more thereof. In some examples, the
CD47 signaling is TSP1-dependent signaling.
[0010] The foregoing and other features of the disclosure will
become more apparent from the following detailed description, which
proceeds with reference to the accompanying figures.
BRIEF DESCRIPTION OF THE DRAWINGS
[0011] FIG. 1A is a graph showing tumor volume in Balb/c mice
injected with 4T1 breast cancer cells in the mammary fat pad and
treated with saline (circles), 10 .mu.g/mL Dox (squares), 10 .mu.M
CD47 morpholino (CD47M; inverted triangles) or 10 .mu.g/mL Dox plus
10 .mu.M CD47M (triangles). Tumor volume was measured every other
day and was calculated using the formula 1/2
(length.times.width.sup.2). Results are mean.+-.SD, 5 mice per
group. *p<0.05. The inset is a digital image of a Western blot
showing a decrease in CD47 protein in tumors 48 hours after
treatment with CD47 morpholino.
[0012] FIG. 1B is a graph showing the weight of the tumors in FIG.
1A at the end of the study. *, p<0.05, n=5 per group.
[0013] FIG. 2A is a graph showing oxygen consumption rate (OCR) in
4T1 breast cancer cells untreated or treated with 10 .mu.M CD47
morpholino (CD47M). After 48 hours, cells were administered
doxorubicin as indicated.
[0014] FIG. 2B is a graph showing OCR in B16 mouse melanoma cells
untreated or treated with 10 .mu.M CD47 morpholino (CD47M). After
48 hours, cells were administered doxorubicin as indicated.
[0015] FIG. 2C is a graph showing extracellular acidification rate
(ECAR) in 4T1 breast cancer cells untreated or treated with 10
.mu.M CD47 morpholino (CD47M). After 48 hours, cells were
administered doxorubicin as indicated.
[0016] FIGS. 3A and 3B are a pair of graphs showing RT-PCR
quantification of PTEN-Induced Putative Kinase (PINK) (A) and
PARKIN (B) gene expression in 4T1 breast cancer cells treated as
shown.
[0017] FIGS. 3C and 3D are a pair of graphs showing RT-PCR
quantification of PINK (C) and PARKIN (D) gene expression in 4T1
breast tumors at time of collection from mice treated as shown.
[0018] FIG. 4 is a series of digital images of hematoxylin &
eosin (H&E) stained (top panels) or TUNEL stained (bottom
panels) cardiac tissue from mice after four rounds of saline,
doxorubicin treatment, or doxorubicin treatment in combination with
CD47 morpholino.
[0019] FIGS. 5A and 5B are a pair of graphs showing Atg5 (A) and
Atg7 (B) gene expression in heart tissue from wild type (WT) or
CD47 null (CD47 -/-) mice treated with 10 .mu.g/kg doxorubicin.
Samples were collected after 24 hours of treatment.
[0020] FIG. 6 is a graph showing cell viability measured by
3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-
-2H-tetrazolium (MTS) reduction in wild type (WT) or CD47 null
(CD47-/-) Jurkat cells 72 hours after treatment with the indicated
concentrations of doxorubicin. n=3, in triplicate. *p<0.005.
[0021] FIGS. 7A-D are a series of graphs showing cell viability of
4T1 breast cancer cells (A), B16 mouse melanoma cells (B), CT26
mouse colon carcinoma cells (C), or human umbilical vein
endothelial cells (D) in the presence or absence of CD47 blockade.
Cells were plated in the presence or absence of 10 .mu.M CD47
morpholino. After 48 hours, cells were treated with the indicated
amounts of doxorubicin (10 .mu.g/ml in FIGS. 7B and C). Cell
viability was measured 72 hours after treatment by MTS reduction
(FIGS. 7A and D) or 24 hours after treatment by lactate
dehydrogenase (LDH) release (FIGS. 7B and C). *p<0.001. Control
cells were untreated and Endoporter indicates treatment with
vehicle without morpholino in FIGS. 7B and C.
[0022] FIG. 8 is a series of digital images showing PINK protein
expression (visualized as brown staining) in sections of tumor (top
panel) or heart (bottom panel) from tumor bearing mice, treated as
indicated.
[0023] FIG. 9 is a graph showing cell viability (expressed as
percent increase in cytotoxicity relative to untreated control
cells) in WT or CD47 null (CD47-) Jurkat cells cultured in the
presence of 5-fluorouracil (5-FU) or camptothecin (CPT).
[0024] FIG. 10 is a graph showing glucose uptake in 4T1B cells
treated with saline, doxorubicin (DOX), CD47 morpholino (CD47M), or
combination CD47 morpholino and doxorubicin treatment. Glucose
uptake was measured 24 hours after treatment.
[0025] FIG. 11 is a digital image of a Western blot of GLUT-1 (top
panel) and actin (bottom panel) in tumors from mice treated with
saline, doxorubicin (DOX), CD47 morpholino (CD47M), or combination
doxorubicin and CD47 morpholino treatment.
[0026] FIG. 12A is a pair of digital images of representative
hematoxylin and eosin stained lung tissue from mice injected with
4T1 breast cancer cells in the mammary fat pad and treated with
saline (left) or doxorubicin and CD47 morpholino (right). The
saline-treated animal had metastases in the lung (arrows), while
the animal treated with doxorubicin plus CD47 M had no lung
metastases.
[0027] FIG. 12B is a graph showing average number of tumor lesions
per lung section in mice injected with 4T1 breast cancer cells in
the mammary fat pad and treated with saline (control) or
doxorubicin and CD47 morpholino (Dox+CD47M).
[0028] FIG. 13 is a graph showing cytotoxicity (lactate
dehydrogenase release in H9c2 cardiac myoblast cells treated with
doxorubicin (Dox), CD47 morpholino (CD47M), or a combination of
doxorubicin and CD47 morpholino.
[0029] FIGS. 14A-14F are a series of graphs showing viability of
wild-type and CD47-/- Jurkat cells cultured for 48 hours in the
presence of the indicated concentrations of mitoxantrone (FIG.
14A), idarubicin hydrochloride (FIG. 14B), pirarubicin (FIG. 14C),
epirubicin hydrochloride (FIG. 14D), vosaroxin (FIG. 14E), and
doxorubicin (FIG. 14F).
[0030] FIGS. 15A-15F are a series of graphs showing viability of
wild-type and CD47-/- Jurkat cells cultured for 48 hours in the
presence of the indicated concentrations of topotecan hydrochloride
(FIG. 15A), camptothecin (FIG. 15B), 10-hydroxycamptothecin (FIG.
15C), SN-38 (FIG. 15D), irinotecan (FIG. 15E), and rebeccamycin
(FIG. 15F).
[0031] FIGS. 16A and B are digital images of lung sections from
mice treated with Dox (FIG. 16A) or Dox plus CD47 morpholino (FIG.
16B).
SEQUENCE LISTING
[0032] The nucleic acid and/or amino acid sequences provided
herewith and in the accompanying sequence listing are shown using
standard letter abbreviations for nucleotide bases and amino acids,
as defined in 37 C.F.R. 1.822. Only one strand of each nucleic acid
sequence is shown, but the complementary strand is understood as
included by any reference to the displayed strand.
[0033] The Sequence Listing is submitted as an ASCII text file in
the form of the file named
[0034] Sequence_Listing.txt, which was created on Feb. 28, 2022,
and is 1,119 bytes, which is incorporated by reference herein.
[0035] SEQ ID NO: 1 is a thrombospondin 1-derived CD47-binding
peptide 7N3 (1102-1112).
[0036] SEQ ID NO: 2 is a CD47-binding peptide (also known as
peptide 459 or 4N1).
[0037] SEQ ID NO: 3 is an antisense morpholino phosphorodiamidate
oligonucleotide complementary to human and murine CD47.
DETAILED DESCRIPTION
[0038] Thrombospondin 1 (TSP1; also known as THBS1) is an
extracellular secreted protein that is involved in a myriad of
cellular processes, including platelet aggregation, neurite
outgrowth, cell motility, cell survival, and cellular
proliferation. Among TSP1's best-characterized functions is
inhibition of angiogenesis. Agents that mimic the ability of TSP1
to inhibit angiogenesis are therefore considered possible therapies
for cancer. In vitro studies have shown the ability of such agents
to block tumor driven angiogenesis. In vivo results in animals have
also been encouraging and have led to clinical trials in people.
See Rusk et al., Clin Cancer Res 12:7456-7464, 2006; Markovic et
al., Am J Clin Oncol 30:303-309, 2007.
[0039] Overexpression of TSP1 has been observed in ischemic tissue,
and is proposed to regulate angiogenesis within ischemic tissue
(Favier et al., J PathoL 207(3): 358-366, 2005), since TSP1
preferentially interferes with wound healing-associated
angiogenesis (Streit et al., EMBO J. 19(13): 3272-3282, 2000) and
limits revascularization in a model of hind limb ischemia (Kopp et
al., J. Clin. Invest. 116(12): 3277-3291, 2006). Peptides derived
from the type 1 repeats inhibit angiogenesis (Shafiee et al., IOVS
41(8): 2378-2388, 2000; Yee et al., Am J. PathoL 165(2): 541-552,
2004; Tolsma et al., J. Cell Biol. 122: 497-511, 1993; Armstrong
and Bornstein, Mat. Biol. 22(1): 63-71, 2003; Guo et al., Cancer
Res. 58(14): 3154-3162, 1998; Guo et al., J. Peptide Res
50:210-221, 1997). Additional TSP1 peptides (e.g., 4N1 and 7N3
classes) have previously been described;
[0040] see, e.g., U.S. Pat. Nos. 5,399,667; 5,627,265; 6,469,138;
5,357,041; 5,491,130; 5,770,563; 5,849,701; 6,051,549; 6,384,189;
6,458,767; and 7,129,052.
[0041] Although identified earlier as "integrin associated protein"
(IAP), CD47 was discovered to be a receptor for the C-terminal
domain of TSP1 in 1996 (Gao et al., J. Biol. Chem. 271: 21-24,
1996). Two members of the signal inhibitory receptor protein
family, SIRPa (also known as BIT, SHPS-1 and p84) and SIRPy are
cell-bound counter receptors for CD47 (van Beek et al., J. Immunol.
175:7781-87, 2005). CD47 is expressed on many if not all normal
cells, and signals in part through coupling to heterotrimeric G
proteins of the G.sub.i class (Frazier et al., J. Biol Chem.
274:8554-8560, 1999).
[0042] TSP1, via binding to CD47, potently limits physiologic NO
signaling in all vascular cell types including endothelial cells,
vascular smooth muscle cells, and platelets. TSP1-CD47 signaling
also directly and acutely regulates tissue blood flow and arterial
tone by inhibiting NO-driven vasorelaxation, and exerts
anti-vasorelaxive effects on smooth muscle by antagonizing the
ability of NO to stimulate cGMP synthesis (Isenberg et al., Proc
Natl Acad Sci USA. 102(37):13141-13146, 2005; Isenberg et al.,
Cardiovasc Res., 71(4):785-793, 2006; Isenberg et al., J Biol Chem
281:26069-26080, 2006, Isenberg et al., Blood, 109(5):1945-1952,
2007). Though inhibition of NO signaling may be induced by TSP1
interacting with CD36, this effect occurs at doses 100- to
1000-fold greater than the doses of TSP1 that drive inhibition
through CD47. Also, TSP1 inhibition of NO signaling through CD36
cannot occur in the absence of CD47 at any dose; thus, the
physiologically relevant pathway is via CD47 (Isenberg et al., J
Biol Chem. 281(36):26069-26080, 2006). See also International
Patent Publication No. WO 2008/060785, which is incorporated herein
by reference in its entirety.
[0043] The structure and function of CD47 has been explored using
anti-CD47 antibodies and peptide ligands of the receptor. Certain
anti-CD47 and TSP1-derived CD47 ligands initiate cell death in
breast cancer cell lines (Manna and Frazier, Cancer Res.
64:1026-1036, 2004) and Jurkat T cells (Manna and Frazier, J
Immunol. 170(7):3544-3553, 2003). These, and similar experiments,
led to the hypothesis that CD47 is necessary for FAS-mediated
apoptosis of Jurkat T cells (Manna et al., J Biol. Chem.
280(33):29637-29644, 2005). Synthetic peptides derived from the
full-length sequence of CD47 have been used to probe its structure
(Rebres et al., J. Biol. Chem. 276(37):34607-34616, 2001). Ligation
of CD47 induces actin polymerization (Rebres et al., J. Biol. Chem.
276(10):7672-7680, 2001), and its ligation by peptides derived from
the carboxy-terminus of TSP1 stimulates the integrin-mediated
adhesion of melanoma cells to specific substrates (Barazi et al.,
J. Biol. Chem. 277(45):42859-42866, 2002; Gao et al., J. Cell Biol.
135(2):533-544, 1996).
[0044] Different antibodies engaging CD47 can exert opposing
stimulatory and inhibitory effects on cells (Li et al., J Immunol
166:2427-2436, 2001 ; Waclavicek et al., J Immunol 159:5345-5354,
1997; Pettersen et al., J Immunol 162:7031-7040, 1999; Ticchioni et
al., J Immunol 158:677-684, 1997). Likewise, a specific CD47 ligand
can act as an agonist or an antagonist in different contexts. For
instance, CD47 ligation by a particular ligand may have different
effects in isolated cells than in vivo. Therefore, some effects of
CD47 antibodies that have been defined using isolated cells do not
extrapolate to in vivo activities, and the function of a specific
CD47 ligand in vivo cannot be predicted solely on the basis of in
vitro testing. However, agents that block CD47 function in vitro
consistently show protective activities in mouse, rat, and pig
models of stress. These include fixed ischemia,
ischemia-reperfusion, and radiation injury (Maxhimer et al., Plast.
Reconstr. Surg. 124:1880-1889, 2009; Maxhimer et al., Sci. Transl.
Med. 1:3ra7, 2009; International Patent Publication Nos. WO
2008/060785 and WO 2010/017332, which are incorporated herein by
reference in their entirety).
[0045] Some of this tissue protection is mediated by increased
NO/cGMP signaling, but additional cytoprotective pathways are also
involved. For example, radioprotection caused by CD47 blockade
involves activation of a protective autophagy pathway (Soto-Pantoja
et al., Autophagy 8:1628-1642, 2012). This protective autophagy
response is evident in isolated cells and in tissues of an
irradiated mouse. In addition to these cell autonomous effects of
CD47 blockade on tumor cells, enhanced ablation of tumors by a CD47
antibody in mouse xenograft models or in conjunction with
irradiation in syngeneic tumor models has been proposed to involve
increased clearance of damaged tumor cells by phagocytes (Maxhimer
et al., Sci. Transl. Med. 1:3ra7, 2009; Majeti et al. Cell.
138:286-299, 2009). CD47 blockade using an antibody is also known
to enhance the efficacy of the CD20 antibody rituximab to treat
non-Hodgkin's lymphoma (Chao et al., Cell 142:699-713, 2010), and
this was proposed to involve a similar enhancement of
SIRP-dependent phagocytic clearance and/or enhanced
antibody-dependent cellular cytotoxicity rather than direct
CD47-dependent effects on the tumor cells.
[0046] It is shown herein that blockade of CD47 signaling in cancer
cells surprisingly enhances sensitivity of cancer cells to
chemotherapy treatment in vitro and tumor in vivo, whereas blockade
of CD47 signaling in non-cancer cells reduces cytotoxicity of the
chemotherapy treatment in these cells and tissues. Without being
bound by theory, contrary to the existing theory invoking
SIRPa-dependent phagocyte activity to explain effects of CD47
blocking antibodies on tumor growth, the increased sensitivity of
cancer cells to chemotherapy in combination with inhibition of CD47
signaling appears to be cell-autonomous and associated with an
increase in mitophagy. Similarly, the reduced cytotoxicity of
chemotherapeutic agents to non-cancer cells in combination with
inhibition of CD47 signaling in those cells appears to be
associated with an increase in autophagy that may be regulated
directly by CD47 or involve disruption of the interaction of CD47
with its soluble ligand TSP1.
I. Abbreviations
[0047] 5-FU 5-fluorouracil
[0048] CD47 M CD47 morpholino
[0049] CPT camptothecin
[0050] Dox doxorubicin
[0051] ECAR extracellular acidification rate
[0052] ECG electrocardiogram
[0053] LDH lactate dehydrogenase
[0054] LVEF left ventricular ejection fraction
[0055] MTS 3-(4,5-di
methylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetra-
zolium
[0056] OCR oxygen consumption rate
[0057] SIRP.alpha. signal-regulatory protein .alpha.
[0058] TSP1 thrombospondin 1
[0059] TUNEL terminal deoxynucleotidyl transferase dUTP nick end
labeling
II. Terms
[0060] Unless otherwise noted, technical terms are used according
to conventional usage. Definitions of common terms in molecular
biology can be found in Benjamin Lewin, Genes V, published by
Oxford University Press, 1994 (ISBN 0-19-854287-9); Kendrew et al.
(eds.), The Encyclopedia of Molecular Biology, published by
Blackwell Science Ltd., 1994 (ISBN 0-632-02182-9); and Robert A.
Meyers (ed.), Molecular Biology and Biotechnology: a Comprehensive
Desk Reference, published by VCH Publishers, Inc., 1995 (ISBN
1-56081-569-8).
[0061] Administration: Administration of an active compound or
composition can be by any route known to one of ordinary skill in
the art. Administration can be local or systemic. Examples of local
administration include, but are not limited to, topical
administration, subcutaneous administration, intramuscular
administration, intrathecal administration, intrapericardial
administration, intra-ocular administration, topical ophthalmic
administration, or administration to the nasal mucosa or lungs by
inhalational administration. In addition, local administration
includes routes of administration typically used for systemic
administration, for example by directing intravascular
administration to the arterial supply for a particular organ. Thus,
in particular embodiments, local administration includes
intra-arterial administration and intravenous administration when
such administration is targeted to the vasculature supplying a
particular organ. Local administration also includes the
incorporation of active compounds and agents into implantable
devices or constructs, such as vascular stents or other reservoirs,
which release the active agents and compounds over extended time
intervals for sustained treatment effects.
[0062] Systemic administration includes any route of administration
designed to distribute an active compound or composition widely
throughout the body via the circulatory system. Thus, systemic
administration includes, but is not limited to intra-arterial and
intravenous administration. Systemic administration also includes,
but is not limited to, oral administration, topical administration,
subcutaneous administration, intramuscular administration,
transdermal administration, or administration by inhalation, when
such administration is directed at absorption and distribution
throughout the body by the circulatory system.
[0063] Antibody: A protein (or protein complex) that includes one
or more polypeptides substantially encoded by immunoglobulin genes
or fragments of immunoglobulin genes. The recognized immunoglobulin
genes include the kappa, lambda, alpha, gamma, delta, epsilon and
mu constant region genes, as well as the myriad immunoglobulin
variable region genes. Light chains are classified as either kappa
or lambda. Heavy chains are classified as gamma, mu, alpha, delta,
or epsilon, which in turn define the immunoglobulin classes, IgG,
IgM, IgA, IgD and IgE, respectively.
[0064] The basic immunoglobulin (antibody) structural unit is
generally a tetramer. Each tetramer is composed of two identical
pairs of polypeptide chains, each pair having one light (about 25
kD) and one heavy chain (about 50-70 kD). The N-terminus of each
chain defines a variable region of about 100 to 110 or more amino
acids primarily responsible for antigen recognition. The terms
variable light chain (V.sub.L) and variable heavy chain (V.sub.H)
refer, respectively, to these light and heavy chains.
[0065] As used herein, the term antibody includes intact
immunoglobulins as well as a number of well-characterized fragments
produced by digestion with various peptidases, or genetically
engineered artificial antibodies. Thus, for example, pepsin digests
an antibody below the disulfide linkages in the hinge region to
produce F(ab)'.sub.2, a dimer of Fab which itself is a light chain
joined to V.sub.H-C.sub.H by a disulfide bond. The F(ab)'.sup.2 may
be reduced under mild conditions to break the disulfide linkage in
the hinge region thereby converting the F(ab)'.sub.2 dimer into an
Fab' monomer. The Fab' monomer is essentially a Fab with part of
the hinge region (see, Fundamental Immunology, W. E. Paul, ed.,
Raven Press, N.Y., 1993). While various antibody fragments are
defined in terms of the digestion of an intact antibody, it will be
appreciated that Fab' fragments may be synthesized de novo either
chemically or by utilizing recombinant DNA methodology. Thus, the
term antibody as used herein also includes antibody fragments
either produced by the modification of whole antibodies or
synthesized de novo using recombinant DNA methodologies.
[0066] Antibodies for use in the methods, compositions, and systems
of this disclosure can be monoclonal or polyclonal. Merely by way
of example, monoclonal antibodies can be prepared from murine
hybridomas according to the classical method of Kohler and Milstein
(Nature 256:495-497, 1975) or derivative methods thereof. Detailed
procedures for monoclonal antibody production are described in
Harlow and Lane (Using Antibodies, A Laboratory Manual, CSHL, New
York, 1998).
[0067] The terms "bind specifically" and "specific binding" refer
to the ability of a specific binding agent (such as, an antibody)
to bind to a target molecular species in preference to binding to
other molecular species with which the specific binding agent and
target molecular species are admixed. A specific binding agent is
said specifically to recognize a target molecular species when it
can bind specifically to that target.
[0068] A single-chain antibody (scFv) is a genetically engineered
molecule containing the V.sub.H and V.sub.L domains of one or more
antibody(ies) linked by a suitable polypeptide linker as a
genetically fused single chain molecule (see, for example, Bird et
al., Science, 242:423-426, 1988; Huston et al., Proc. Natl. Acad.
Sci., 85:5879-5883, 1988). Diabodies are bivalent, bispecific
antibodies in which V.sub.H and V.sub.L domains are expressed on a
single polypeptide chain, but using a linker that is too short to
allow for pairing between the two domains on the same chain,
thereby forcing the domains to pair with complementary domains of
another chain and creating two antigen binding sites (see, for
example, Holliger et al., Proc. Natl. Acad. Sci., 90:6444-6448,
1993; Poljak et al., Structure, 2:1121-1123, 1994). One or more
complementarity determining regions (CDRs) may be incorporated into
a molecule either covalently or noncovalently to make the resultant
molecule an immunoadhesin. An immunoadhesin may incorporate the
CDR(s) as part of a larger polypeptide chain, may covalently link
the CDR(s) to another polypeptide chain, or may incorporate the
CDR(s) noncovalently. The CDRs permit the immunoadhesin to
specifically bind to a particular antigen of interest. A chimeric
antibody is an antibody that contains one or more regions from one
antibody and one or more regions from one or more other
antibodies.
[0069] An antibody may have one or more binding sites. If there is
more than one binding site, the binding sites may be identical to
one another or may be different. For instance, a
naturally-occurring immunoglobulin has two identical binding sites,
a single-chain antibody or Fab fragment has one binding site, while
a bispecific or bifunctional antibody has two different binding
sites.
[0070] A neutralizing antibody or an inhibitory antibody is an
antibody that inhibits at least one activity of a target, usually a
polypeptide, such as by blocking the binding of the polypeptide to
a ligand to which it normally binds, or by disrupting or otherwise
interfering with a protein-protein interaction of the polypeptide
with a second polypeptide. An activating antibody is an antibody
that increases an activity of a polypeptide. Antibodies may
function as mimics of a target protein activity, or as blockers of
the target protein activity, with therapeutic effect derived
therein.
[0071] Antisense, Sense, and Antigene: Double-stranded DNA (dsDNA)
has two strands, a 5'->3' strand, referred to as the plus
strand, and a 3'->5' strand (the reverse compliment), referred
to as the minus strand. Because RNA polymerase adds nucleic acids
in a 5'->3' direction, the minus strand of the DNA serves as the
template for the RNA during transcription. Thus, the RNA formed
will have a sequence complementary to the minus strand and
identical to the plus strand (except that U is substituted for
T).
[0072] Antisense molecules are molecules that are specifically
hybridizable or specifically complementary to either RNA or plus
strand DNA. Sense molecules are molecules that are specifically
hybridizable or specifically complementary to the minus strand of
DNA. Antigene molecules are either antisense or sense molecules
complimentary to a dsDNA target. In one embodiment, an antisense
molecule specifically hybridizes to a target mRNA and inhibits
translation of the target mRNA.
[0073] Anthracycline: A class of chemotherapeutic agents that are
DNA intercalators. Anthracyclines were originally isolated from
Streptomyces peucetius. Anthracyclines include daunorubicin (trade
names: Cerubidine, DaunoXome.RTM.), doxorubicin (trade names:
Adriamycin, Rubex, Doxil.RTM., Caelyx, Myocet.TM.), epirubicin
(trade name: Ellence.RTM.), idarubicin (trade name: Idamycin),
pirarubicin, and valrubicin (trade name: Valstar.RTM.). Analogs of
anthracyclines, such as mitoxantrone (trade name: Novantrone.RTM.)
and vosaroxin, are also considered to be anthracycline-like
compounds, and are part of the class of anthracycline
chemotherapeutic agents.
[0074] Cancer: A malignant neoplasm that has undergone
characteristic anaplasia with loss of differentiation, increased
rate of growth, invasion of surrounding tissue, and is capable of
metastasis. For example, breast cancer is a malignant neoplasm that
arises in or from breast tissue (such as a ductal carcinoma) and
lung cancer is a malignant neoplasm that arises in or from lung
tissue (such as non-small cell lung cancer or small cell lung
cancer). In other examples, prostate cancer is a malignant neoplasm
that arises in or from prostate tissue and colorectal cancer is
cancer that arises in or from large bowel (colon or rectal tissue).
Cancer also includes hematological malignancies (such as leukemia)
which arise in blood cells and/or bone marrow.
[0075] Residual cancer is cancer that remains in a subject after
any form of treatment given to the subject to reduce or eradicate
cancer. Metastatic cancer is a cancer at one or more sites in the
body other than the site of origin of the original (primary) cancer
from which the metastatic cancer is derived. Local recurrence is
reoccurrence of the cancer at or near the same site (such as in the
same tissue) as the original cancer.
[0076] CD47: CD47 is an atypical member of the immunoglobulin and
the G protein-coupled receptor superfamilies. It consists of an
N-terminal extracellular IgV domain, five transmembrane segments
and an alternatively spliced cytoplasmic tail (Brown and Frazier,
Trends Cell Biol. 11(3): 130-135, 2001). CD47 sequences are
publically available, such as GenBank Accession Nos. NM_198793,
NM_001777, and NM_010581 (nucleic acids) and NP_942088, NP_001768,
and NP_034711 (protein), all of which are incorporated herein by
reference as present in GenBank on Mar. 1, 2013. One of ordinary
skill in the art can identify additional CD47 sequences, including
variant sequences.
[0077] Chemotherapeutic agent: A chemical agent with therapeutic
usefulness in the treatment of diseases characterized by abnormal
cell growth. Such diseases include tumors, neoplasms, and cancer,
as well as diseases characterized by hyperplastic growth such as
psoriasis. In one embodiment, a chemotherapeutic agent is an agent
of use in treating neoplasms such as solid tumors or hematopoietic
malignancies. One of ordinary skill in the art can readily identify
a chemotherapeutic agent of use (e.g., see Slapak and Kufe,
Principles of Cancer Therapy, Chapter 86 in Harrison's Principles
of Internal Medicine, 14th edition; Perry et al., Chemotherapy, Ch.
17 in Abeloff, Clinical Oncology 2.sup.nd ed., 2000 Churchill
Livingstone, Inc; Baltzer L, Berkery R (eds): Oncology Pocket Guide
to Chemotherapy, 2nd ed. St. Louis, Mosby-Year Book, 1995; Fischer
D S, Knobf M F, Durivage H J (eds): The Cancer Chemotherapy
Handbook, 4th ed. St. Louis, Mosby-Year Book, 1993).
[0078] Cytotoxicity: The quality of being toxic to cells. Compounds
that are cytotoxic damage cells and may cause or promote cell death
(such as necrosis or apoptosis) or may inhibit cell growth or
division. Chemotherapeutic or anti-neoplastic agents are examples
of cytotoxic compounds that in some examples may selectively kill
dividing cells. A specific form of cytotoxicity is cardiotoxicity,
which refers to the quality of being cytotoxic to cardiac cells or
tissue, for example cytotoxic to cardiomyocytes or cardiac
myoblasts.
[0079] DNA damaging agent: Agents that interfere with DNA
structure, DNA synthesis, or DNA replication. Some chemotherapeutic
agents are DNA damaging agents, such as DNA intercalating agents,
DNA alkylating agents, antimetabolites that inhibit nucleotide
synthesis (such as purine analogs, pyrimidine analogs, or folate
analogs), topoisomerase inhibitors, or agents that cause oxidative
damage (for example, anthracyclines and platinum compounds).
[0080] Effective amount: A quantity of an agent or compound
sufficient to achieve a desired effect in a subject being treated.
An effective amount of a compound can be administered in a single
dose, or in several doses, for example daily, during a course of
treatment. However, the effective amount of the compound will be
dependent on the compound applied, the subject being treated, the
severity and type of the affliction, and the manner of
administration of the compound.
[0081] Gene expression: The process by which the coded information
of a nucleic acid transcriptional unit (including, for example,
genomic DNA or cDNA) is converted into an operational,
non-operational, or structural part of a cell, often including the
synthesis of a protein. Gene expression can be influenced by
external signals; for instance, exposure of a subject to an agent
that inhibits gene expression. Expression of a gene also may be
regulated anywhere in the pathway from DNA to RNA to protein.
Regulation of gene expression occurs, for instance, through
controls acting on transcription, translation, RNA transport and
processing, degradation of intermediary molecules such as mRNA, or
through activation, inactivation, compartmentalization or
degradation of specific protein molecules after they have been
made, or by combinations thereof. Gene expression may be measured
at the RNA level or the protein level and by any method known in
the art, including Northern blot, RT-PCR, Western blot, or in
vitro, in situ, or in vivo protein activity assay(s).
[0082] The expression of a nucleic acid may be modulated compared
to a control state, such as at a control time (for example, prior
to administration of a substance or agent that affects regulation
of the nucleic acid under observation) or in a control cell or
subject, or as compared to another nucleic acid. Such modulation
includes but is not necessarily limited to overexpression,
underexpression, or suppression of expression. In addition, it is
understood that modulation of nucleic acid expression may be
associated with, and in fact may result in, a modulation in the
expression of an encoded protein or even a protein that is not
encoded by that nucleic acid.
[0083] It is understood that interfering with or inhibiting gene
expression is relative, and does not require absolute suppression
of the gene. Thus, in certain embodiments, interfering with or
inhibiting gene expression of a target gene requires that,
following application of an agent, the gene is expressed at least
5% less than prior to application (or compared to a control), at
least 10% less, at least 15% less, at least 20% less, at least 25%
less, or even more reduced. Thus, in some particular embodiments,
application of an agent reduces expression of the target gene by
about 30%, about 40%, about 50%, about 60%, or more for example,
compared to a control. In specific examples, where the agent is
particularly effective, expression is reduced by 70%, 80%, 85%,
90%, 95%, or even more compared to a control. Gene expression is
substantially eliminated when expression of the gene is reduced by
90%, 95%, 98%, 99% or even 100%.
[0084] Inhibiting protein activity: To decrease, limit, or block an
action, function or expression of a protein. The phrase "inhibit
protein activity" is not intended to be an absolute term. Instead,
the phrase is intended to convey a wide range of inhibitory effects
that various agents may have on the normal (for example,
uninhibited or control) protein activity. Inhibition of protein
activity may, but need not, result in an increase in the level or
activity of an indicator of the protein's activity. By way of
example, this can happen when the protein of interest is acting as
an inhibitor or suppressor of a downstream indicator. Thus, protein
activity may be inhibited when the level or activity of any direct
or indirect indicator of the protein's activity is changed (for
example, increased or decreased) by at least 10%, at least 20%, at
least 30%, at least 50%, at least 80%, at least 100% or at least
250% or more as compared to control measurements of the same
indicator.
[0085] Inhibition of protein activity may also be effected, for
example, by inhibiting expression of the gene encoding the protein
or by decreasing the half-life of the mRNA encoding the
protein.
[0086] Isolated: An isolated biological component (such as a
nucleic acid, peptide or protein) has been substantially separated,
produced apart from, or purified away from other biological
components in the cell of the organism in which the component
naturally occurs, for instance, other chromosomal and
extrachromosomal DNA and RNA, and proteins. Nucleic acids, peptides
and proteins that have been isolated thus include nucleic acids and
proteins purified by standard purification methods. The term also
embraces nucleic acids, peptides and proteins prepared by
recombinant expression in a host cell as well as chemically
synthesized nucleic acids. The terms isolated and purified do not
require absolute purity; rather, it is intended as a relative term.
Thus, for example, an isolated nucleic acid or peptide preparation
is one in which the nucleic acid, peptide, or protein is more
enriched than it is in its natural environment within a cell.
Preferably, a preparation is purified such that the nucleic acid,
peptide, or protein represents at least 50% of the total nucleic
acid, peptide, or protein content of the preparation.
[0087] Morpholino: A morpholino oligo is structurally different
from natural nucleic acids, with morpholino rings replacing the
ribose or deoxyribose sugar moieties and non-ionic
phosphorodiamidate linkages replacing the anionic phosphates of DNA
and RNA. Each morpholino ring suitably positions one of the
standard bases (A, G, C, T/U), so that a 25-base morpholino oligo
strongly and specifically binds to its complementary 25-base target
site in a strand of RNA via Watson-Crick pairing. Because the
backbone of the morpholino oligo is not recognized by cellular
enzymes of signaling proteins, it is stable to nucleases and does
not trigger an innate immune response through the toll-like
receptors. This avoids loss of oligo, inflammation or interferon
induction. Morpholinos can be delivered by a number of techniques,
including direct injection to tissues or via infusion pump and
intravenous bolus. A morpholino is one example of a stabilized
nucleic acid molecule.
[0088] Oligonucleotide: A plurality of joined nucleotides joined by
native phosphodiester bonds, between about 6 and about 300
nucleotides in length. An oligonucleotide analog refers to moieties
that function similarly to oligonucleotides but have non-naturally
occurring portions. For example, oligonucleotide analogs can
contain non-naturally occurring portions, such as altered sugar
moieties or inter-sugar linkages, such as a phosphorothioate
oligodeoxynucleotide. Functional analogs of naturally occurring
polynucleotides can bind to RNA or DNA, and include stabilized
oligonucleotides, such as peptide nucleic acid (PNA) molecules and
morpholinos.
[0089] Particular oligonucleotides and oligonucleotide analogs can
include linear sequences up to about 200 nucleotides in length, for
example a sequence (such as DNA or RNA) that is at least 6 bases,
for example at least 8, 10, 15, 20, 25, 30, 35, 40, 45, 50, 100 or
even 200 bases long, or from about 6 to about 50 bases, for example
about 10-25 bases, such as 12, 15 20, or 25 bases.
[0090] Pharmaceutically acceptable carriers: The pharmaceutically
acceptable carriers useful in this disclosure are conventional.
Remington: The Science and Practice of Pharmacy, The University of
the Sciences in Philadelphia, Editor, Lippincott, Williams, &
Wilkins, Philadelphia, Pa., 21St Edition (2005), describes
compositions and formulations suitable for pharmaceutical delivery
of the compounds herein disclosed.
[0091] In general, the nature of the carrier will depend on the
particular mode of administration being employed. For instance,
parenteral formulations usually comprise injectable fluids that
include pharmaceutically and physiologically acceptable fluids such
as water, physiological saline, balanced salt solutions, aqueous
dextrose, glycerol or the like as a vehicle. For solid compositions
(for example, powder, pill, tablet, or capsule forms), conventional
non-toxic solid carriers can include, for example, pharmaceutical
grades of mannitol, lactose, starch, or magnesium stearate. In
addition to biologically-neutral carriers, pharmaceutical
compositions to be administered can contain minor amounts of
non-toxic auxiliary substances, such as wetting or emulsifying
agents, preservatives, and pH buffering agents and the like, for
example sodium acetate or sorbitan monolaurate.
[0092] Purified: In a more pure form than is found in nature. The
term purified does not require absolute purity; rather, it is
intended as a relative term. Thus, for example, a purified protein
preparation is one in which the protein referred to is more pure
than the protein in its natural environment within a cell.
[0093] The term substantially purified as used herein refers to a
molecule (for example, a nucleic acid, polypeptide,
oligonucleotide, etc.) that is substantially free of other
proteins, lipids, carbohydrates, or other materials with which it
is naturally associated. In one non-limiting embodiment, a
substantially purified molecule is a polypeptide that is at least
50% free of other proteins, lipids, carbohydrates, or other
materials with which it is naturally associated. In another
embodiment, the polypeptide is at least at least 80% free of other
proteins, lipids, carbohydrates, or other materials with which it
is naturally associated. In yet other embodiments, the polypeptide
is at least 90% or at least 95% free of other proteins, lipids,
carbohydrates, or other materials with which it is naturally
associated.
[0094] RNA interference (RNA silencing; RNAi): A gene-silencing
mechanism whereby specific double-stranded RNA (dsRNA) trigger the
degradation of homologous mRNA (also called target RNA).
Double-stranded RNA is processed into small interfering RNAs
(siRNA), which serve as a guide for cleavage of the homologous mRNA
in the RNA-induced silencing complex (RISC). The remnants of the
target RNA may then also act as siRNA; thus resulting in a cascade
effect.
[0095] Small molecule inhibitor: A molecule, typically with a
molecular weight less than 1000 Daltons, or in some embodiments,
less than about 500 Daltons, wherein the molecule is capable of
inhibiting, to some measurable extent, an activity of some target
molecule.
[0096] Stabilized nucleic acid molecules: A variety of synthetic
nucleic acid derivatives with increased stability as compared to
native (e.g., non-modified) nucleic acids. Stabilized nucleic acid
molecules include nucleic acids where the labile phosphodiester
bonds in nucleic acids are replaced with more stable
phosphoramidates or peptide amide backbones, or oligonucleotides
including one or more such nucleic acid derivatives. Also included
are nucleic acids having a substitution of the deoxyribosyl moiety
with a more stable morpholine derivative (e.g., morpholinos) or
oligonucleotides including one or more morpholino nucleic acids. In
other examples, stabilized nucleic acid molecules include "locked"
nucleic acids where the ribose moiety is modified with a bridge
connecting the 2' oxygen and the 4' carbon, or oligonucleotides
including one or more locked nucleic acid.
[0097] Subject: Living multi-cellular organisms, including
vertebrate organisms, a category that includes both human and
non-human mammals.
[0098] Target sequence: A target sequence is a portion of ssDNA,
dsDNA, or RNA that, upon hybridization to an oligonucleotide or
oligonucleotide analog (e.g., a morpholino), results in the
inhibition of expression of the target. Either an antisense or a
sense molecule can be used to target a portion of dsDNA, as both
will interfere with the expression of that portion of the dsDNA.
The antisense molecule can bind to the plus strand, and the sense
molecule can bind to the minus strand. Thus, target sequences can
be ssDNA, dsDNA, and RNA.
[0099] Thrombospondin 1 (TSP1): TSP1 contains three type 1 repeat
structural domains and a carboxy-terminal domain that were
identified as the loci of the full-length protein's anti-angiogenic
functionality (Lawler, Curr. Opin. Cell Biol. 12(5): 634-640,
2000). TSP1 sequences are publically available, such as GenBank
[0100] Accession Nos. NM_003246 and NM_011580 (nucleic acids) and
NP_003237 and NP_035710 (protein), all of which are incorporated
herein by reference as present in GenBank on Mar. 1, 2013. One of
ordinary skill in the art can identify additional TSP1 sequences,
including variant sequences.
[0101] Treating a disease: Includes inhibiting or preventing the
partial or full development or progression of a disease, for
example in a person who is known to have a predisposition to a
disease. Furthermore, treating a disease refers to a therapeutic
intervention that ameliorates at least one sign or symptom of a
disease or pathological condition, or interferes with a
pathophysiological process, after the disease or pathological
condition has begun to develop.
[0102] Tumor: The product of neoplasia is a neoplasm (a tumor),
which is an abnormal growth of tissue that results from excessive
cell division. A tumor that does not invade surrounding tissue or
metastasize is referred to as "benign." A tumor that invades the
surrounding tissue and/or can metastasize is referred to as
"malignant."
[0103] Under conditions sufficient for: A phrase that is used to
describe any environment that permits the desired activity. In one
example, this includes administering an effective amount of a
composition that includes a peptide, antibody, or oligonucleotide
(e.g., morpholino), sufficient to enable the desired activity.
[0104] The singular terms "a," "an," and "the" include plural
referents unless context clearly indicates otherwise. Similarly,
the word "or" is intended to include "and" unless the context
clearly indicates otherwise. Hence "comprising A or B" means
"including A, or including B, or including A and B." It is further
to be understood that all base sizes or amino acid sizes, and all
molecular weight or molecular mass values, given for nucleic acids
or polypeptides are approximate, and are provided for description.
Although methods and materials similar or equivalent to those
described herein can be used in the practice or testing of the
present invention, suitable methods and materials are described
below. All publications, patent applications, patents, and other
references mentioned herein are incorporated by reference in their
entirety.
[0105] Unless otherwise explained, all technical and scientific
terms used herein have the same meaning as commonly understood by
one of ordinary skill in the art to which this invention belongs.
In case of conflict, the present specification, including
explanations of terms, will control. In addition, the materials,
methods, and examples are illustrative only and not intended to be
limiting.
III. Methods of Reducing Cytotoxicity and/or Increasing Anti-Tumor
Effects of Chemotherapeutic Agents
[0106] Disclosed herein are methods of reducing cytotoxicity of a
chemotherapeutic agent to non-cancer cells by administering to a
subject with cancer an effective amount of an agent that inhibits
CD47 signaling and one or more chemotherapeutic agents (such as DNA
damaging chemotherapeutic agents). Also disclosed herein are
methods of increasing cytotoxicity of a chemotherapeutic agent to
cancer cells (such as increasing the anti-tumor effect of a
chemotherapeutic agent) by administering to a subject with cancer
an effective amount of an agent that inhibits CD47 signaling and
one or more chemotherapeutic agents. In some examples,
administering to a subject with cancer an effective amount of an
agent that inhibits CD47 signaling and one or more chemotherapeutic
agents both reduces cytotoxicity of the chemotherapeutic agent to
non-cancer cells and increases cytotoxicity of the chemotherapeutic
agent to cancer cells. In some embodiments, the inhibitor of CD47
signaling is administered to the subject before, during, or after
the administration of the chemotherapeutic agent(s).
[0107] In addition to desired cytotoxicity to cancer cells, many
chemotherapeutic agents cause significant cytotoxicity to
non-cancer ("normal") cells, often limiting the dose and/or
duration of chemotherapy that can be administered to a subject.
Common side effects of chemotherapeutic agents include
myelosuppression (anemia, neutropenia, leukopenia, and/or
thrombocytopenia), gastrointestinal effects (nausea, vomiting,
and/or diarrhea), hair loss, cardiac damage (referred to as
cardiotoxicity, including but not limited to arrhythmia,
cardiomyopathy, and/or congestive heart failure), nephrotoxicity,
hepatotoxicity, and peripheral neuropathy. These side effects are
due to cytotoxicity of the chemotherapeutic agent to non-cancer
cells. It has surprisingly been discovered that inhibition of CD47
signaling in combination with a chemotherapeutic agent (for
example, before, after, or during administration of the
chemotherapeutic agent) reduces damage to non-cancer cells or
tissues, while maintaining or even increasing the cytotoxicity of
the chemotherapeutic agent to cancer cells.
[0108] In some embodiments, the disclosed methods also include
detecting a reduction of cytotoxicity of a chemotherapeutic agent
to non-cancer cells in a subject administered an agent that
inhibits CD47 signaling and a chemotherapeutic agent. One of
ordinary skill in the art can identify methods to detect a
reduction in cytotoxicity to non-cancer cells, as discussed below
in Section IIIB. In additional embodiments, the disclosed methods
also include selecting a subject at risk for cytotoxicity of a
chemotherapeutic reagent to non-cancer cells for administration of
an agent that inhibits CD47 signaling and a chemotherapeutic agent.
One of ordinary skill in the art can identify a subject at risk for
cytotoxicity of a chemotherapeutic agent to non-cancer cells. Risk
factors for cytotoxicity are discussed below in Section IIIB.
[0109] Agents that inhibit CD47 signaling include anti-CD47
antibodies, or fragments thereof; CD47-binding peptides; CD47
antisense oligonucleotides (such as a CD47 morpholino); anti-TSP1
antibodies, or fragments thereof; TSP1-binding peptides; TSP1
antisense oligonucleotides (such as a TSP1 morpholino); small
molecules capable of binding to CD47; small molecules capable of
binding to TSP1; or combinations of two or more thereof. Inhibitors
of CD47 signaling are discussed in more detail in Section IV,
below.
[0110] In some examples, the agent that inhibits CD47 signaling is
administered to the subject before the chemotherapeutic agent. For
example, the agent that inhibits CD47 signaling may be administered
at least about 1 hour to 1 week before administration of the
chemotherapeutic agent (for example, at least about 1 hour to 72
hours, about 6 hours to 48 hours, about 12 hours to 36 hours, about
24 hours to 48 hours, about 1 day to 10 days, about 1 day to 7
days, about 2 days to 5 days, or about 3 days to 4 days before
administration of the chemotherapeutic agent). In other examples,
the agent that inhibits CD47 signaling may be administered to the
subject more than about 1 hour, 2 hours, 3 hours, 4 hours, 5 hours,
6 hours, 8 hours, 10 hours, 12 hours, 16 hours, 18 hours, 24 hours,
36 hours, 48 hours, 60 hours, 3 days, 4 days, 5 days, 6 days, 7
days, 8 days, 9 days, or 10 days before administration of the
chemotherapeutic agent. In further examples, the agent that
inhibits CD47 signaling is administered to the subject no less than
about 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours, 8 hours,
10 hours, 12 hours, 16 hours, 18 hours, 24 hours, 36 hours, 48
hours, 60 hours, 3 days, 4 days, 5 days, 6 days, 7 days, 8 days, 9
days, or 10 days before administration of the chemotherapeutic
agent.
[0111] In other examples, the agent that inhibits CD47 signaling is
administered to the subject after the chemotherapeutic agent. For
example, the agent that inhibits CD47 signaling may be administered
at least about 1 hour to 1 week after administration of the
chemotherapeutic agent (for example, about 1 hour to 72 hours,
about 6 hours to 48 hours, about 12 hours to 36 hours, about 24
hours to 48 hours, about 1 day to 10 days, about 1 day to 7 days,
about 2 days to 5 days, or about 3 days to 4 days after
administration of the chemotherapeutic agent). In some examples,
the agent that inhibits CD47 signaling may be administered to the
subject more than about 1 hour, 2 hours, 3 hours, 4 hours, 5 hours,
6 hours, 8 hours, 10 hours, 12 hours, 16 hours, 18 hours, 24 hours,
36 hours, 48 hours, 60 hours, 3 days, 4 days, 5 days, 6 days, 7
days, 8 days, 9 days, or 10 days after administration of the
chemotherapeutic agent. In further examples, the agent that
inhibits CD47 signaling is administered to the subject no less than
about 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours, 8 hours,
10 hours, 12 hours, 16 hours, 18 hours, 24 hours, 36 hours, 48
hours, 60 hours, 3 days, 4 days, 5 days, 6 days, or 7 days after
administration of the chemotherapeutic agent.
[0112] In still further examples, the agent that inhibits CD47
signaling is administered to the subject simultaneously or
substantially simultaneously with the chemotherapeutic agent. In a
particular example, a chemotherapeutic agent is administered
starting immediately after the administration of an agent that
inhibits CD47 signaling, for example, no more than 1 hour after
administration of the agent that inhibits CD47 signaling (such as
no more than 55, 50, 45, 40, 35, 30, 25, 20, 15, 10, or 5 minutes
after administration of the agent that inhibits CD47 signaling). In
another example, an agent that inhibits CD47 signaling is
administered starting immediately after the administration of
chemotherapeutic agent, for example, no more than 1 hour after
administration of the chemotherapeutic agent (such as no more than
55, 50, 45, 40, 35, 30, 25, 20, 15, 10, or 5 minutes after
administration of the chemotherapeutic agent). In further examples,
the agent that inhibits CD47 signaling and the chemotherapeutic
agent are administered simultaneously, for example at the same time
(for example, by the same or different routes of administration) or
in the same formulation.
[0113] The subject may have cancer which includes a solid tumor,
malignant ascites, disseminated cancer, or a hematological
malignancy. Examples of solid cancers, such as sarcomas and
carcinomas, include but are not limited to fibrosarcoma,
myxosarcoma, liposarcoma, chondrosarcoma, osteogenic sarcoma, and
other sarcomas, synovioma, mesothelioma, Ewing's tumor,
leiomyosarcoma, rhabdomyosarcoma, colon carcinoma, lymphoid
malignancy, pancreatic cancer, breast cancer, lung cancers, ovarian
cancer, prostate cancer, hepatocellular carcinoma, squamous cell
carcinoma, basal cell carcinoma, adenocarcinoma, sweat gland
carcinoma, sebaceous gland carcinoma, papillary carcinoma,
papillary adenocarcinoma, medullary carcinoma, bronchogenic
carcinoma, renal cell carcinoma, hepatoma, bile duct carcinoma,
choriocarcinoma, Wilms' tumor, cervical cancer, testicular tumor,
bladder carcinoma, and CNS tumors (such as a glioma, astrocytoma,
medulloblastoma, craniopharyogioma, ependymoma, pinealoma,
hemangioblastoma, acoustic neuroma, oligodendroglioma, menangioma,
melanoma, neuroblastoma and retinoblastoma). Examples of
hematological cancers include but are not limited to leukemias,
including acute leukemias (such as acute lymphocytic leukemia,
acute myelocytic leukemia, acute myelogenous leukemia and
myeloblastic, promyelocytic, myelomonocytic, monocytic and
erythroleukemia), chronic leukemias (such as chronic myelocytic
(granulocytic) leukemia, chronic myelogenous leukemia, and chronic
lymphocytic leukemia), polycythemia vera, lymphoma, Hodgkin's
disease, non-Hodgkin's lymphoma (indolent and high grade forms),
multiple myeloma, Waldenstrom's macroglobulinemia, heavy chain
disease, myelodysplastic syndrome, and myelodysplasia. In some
examples, the subject may have a metastasis of a solid tumor or
hematological malignancy, for example, a metastasis to lung, brain,
liver, or bone.
[0114] In particular examples, the subject with cancer may have
breast cancer, lung cancer, ovarian cancer, prostate cancer,
thyroid cancer, bladder cancer, stomach cancer, multiple myeloma,
soft tissue sarcoma, chronic lymphocytic leukemia, acute
lymphocytic leukemia, non-Hodgkin's lymphoma, or a metastasis
thereof.
[0115] A. Chemotherapeutic agents
[0116] Chemotherapeutic agents of use in the disclosed methods
include, but are not limited to alkylating agents, such as nitrogen
mustards (for example, chlorambucil, chlormethine,
cyclophosphamide, ifosfamide, and melphalan), nitrosoureas (for
example, carmustine, fotemustine, lomustine, and streptozocin),
platinum compounds (for example, carboplatin, cisplatin,
oxaliplatin, and BBR3464), busulfan, dacarbazine, mechlorethamine,
procarbazine, temozolomide, thiotepa, and uramustine;
antimetabolites, such as folic acid (for example, methotrexate,
pemetrexed, and raltitrexed), purines (for example, cladribine,
clofarabine, fludarabine, mercaptopurine, and thioguanine),
pyrimidines (for example, capecitabine), cytarabine, fluorouracil
(e.g., 5-FU), and gemcitabine; plant alkaloids, such as podophyllum
(for example, etoposide, and teniposide), taxane (for example,
docetaxel and paclitaxel), vinca (for example, vinblastine,
vincristine, vindesine, and vinorelbine); cytotoxic/antitumor
antibiotics, such as anthracycline family members (for example,
daunorubicin, doxorubicin, epirubicin, idarubicin, mitoxantrone,
pirarubicin, vosaroxin, valrubicin, and mitoxantrone), bleomycin,
hydroxyurea, geldanamycin, 17-N-allylamino-17-demethoxygeldanamycin
(17-AAG), 17-dimethylaminoethylamino-17-demethoxygeldanamycin
(17-DMAG), and mitomycin; topoisomerase inhibitors, such as
camptothecin, 10-hydroxycamptothecin, irinotecan, SN-38, topotecan,
rebeccamycin, or etoposide; monoclonal antibodies, such as
alemtuzumab, bevacizumab, brentuximab, cetuximab, ibritumomab,
ipilimumab, gemtuzumab, rituximab, ofatumumab, panitumumab,
nimotuzumab, tositumomab, and trastuzumab; photosensitizers, such
as aminolevulinic acid, methyl aminolevulinate, porfimer sodium,
and verteporfin; tyrosine kinase inhibitors, such as afatinib,
axitinib, bosutinib, crizotinib, dasatinib, erlotinib,
fostamatinib, gefitinib, imatinib, lapatinib, lenvatinib,
nilotinib, pazopanib, pegaptianib, sorafenib, sunitinib, and
vemurafenib; and other agents, such as alitretinoin, altretamine,
amsacrine, anagrelide, arsenic trioxide, asparaginase, bexarotene,
bortezomib, celecoxib, denileukin diftitox, estramustine,
hydroxycarbamide, pentostatin, masoprocol, mitotane, pegaspargase,
and tretinoin. Additional chemotherapeutic agents are listed in
Tables 1 and 2 herein. Chemotherapeutic agents can be administered
individually, or in combination. Selection and therapeutic dosages
of such agents are known to those of ordinary in the art, and can
be determined by a skilled clinician.
[0117] Chemotherapeutic agents are frequently administered in
combination regimens. The disclosed methods include administering
an agent that inhibits CD47 signaling with a combination of
chemotherapeutic agents. Exemplary chemotherapy combinations
include but are not limited to adriamycin (doxorubicin), bleomycin,
vinblastine, dacarbazine (ABVD); adriamycin (doxorubicin),
cyclophosphamide (AC or CA); cyclophosphamide, adriamycin
(doxorubicin), vincristine (CAV); cyclophosphamide,
hydroxydaunorubicin (doxorubicin), vincristine (oncovin),
prednisone (CHOP); CHOP plus rituximab (CHOP-R); epirubicin,
cisplatin, fluorouracil (ECF); etoposide, prednisone, vincristine
(oncovin), cyclophosphamide, hydroxydaunorubicin (doxorubicin)
(EPOCH); fluorouracil, leucovorin (folinic acid), oxaliplatin
(FOLFOX); and ifosfamide, carboplatin, etoposide (ICE). One of
ordinary skill in the art can identify other combinations of
chemotherapeutic agents of use in the methods disclosed herein.
[0118] In particular embodiments of the disclosed methods a subject
is administered an agent that inhibits CD47 signaling and a DNA
intercalating chemotherapeutic agent (such as an anthracycline).
Anthracycline chemotherapeutic agents include anthracycline
antibiotic compounds from Streptomyces peucetius and derivatives,
analogs, or mimetics thereof, including anthracycline-like
chemotherapeutic agents. In some examples, an anthracycline
chemotherapeutic agent includes one or more of daunorubicin
(standard or liposomal formulation), doxorubicin (standard or
liposomal formulation), epirubicin, idarubicin, pirarubicin,
valrubicin, or derivatives thereof, such as liposomal formulations
thereof. In other examples, an anthracycline chemotherapeutic agent
includes an anthracycline-like chemotherapeutic agent, such as
mitoxantrone or pixantrone or a chemotherapeutic agent targeting
topoisomerase-II, such as vosaroxin. In a particular, non-limiting
example, the anthracycline chemotherapeutic agent is doxorubicin.
Other DNA intercalating chemotherapeutic agents include acridine
and psoralen.
[0119] In other embodiments of the disclosed methods, a subject is
administered an agent that inhibits CD47 signaling and an agent
that interferes with DNA synthesis or replication (such as
antimetabolite chemotherapeutic agent). Antimetabolite
chemotherapeutic agents include purine analogs, pyrimidine analogs,
and folate analogs. Purine analog chemotherapeutic agents include
fludarabine, mercaptopurine, thioguanine, cladribine, and
pentostatin. Pyrimidine analog chemotherapeutic agents include
5-fluorouracil, floxuridine, cytarabine, capecitabine, and
gemcitabine. Folate analog chemotherapeutic agents include
methotrexate, pemetrexed, raltitrexed, and pralatrexate. In one
non-limiting example, the antimetabolite chemotherapeutic agent is
5-fluorouracil.
[0120] In additional embodiments of the disclosed methods, a
subject is administered an agent that inhibits CD47 signaling and
an agent that interferes with DNA replication (such as a
topoisomerase inhibitor chemotherapeutic agent). In some examples,
the chemotherapeutic agent is a topoisomerase I inhibitor or a
topoisomerase II inhibitor. Topoisomerase inhibitor
chemotherapeutic agents include camptothecin,
10-hydroxycamptothecin, irinotecan, SN-38, topotecan, rebeccamycin,
etoposide, teniposide, amsacirine, ellipicine, and etoposide. In
one non-limiting example, the topoisomerase inhibitor
chemotherapeutic agent is camptothecin.
[0121] In further embodiments of the disclosed methods, a subject
is administered an agent that inhibits CD47 signaling and a
chemotherapeutic agent that causes oxidative damage to DNA. In some
examples, the chemotherapeutic agent is a platinum compound, such
as cis-platin, oxaliplatin, or carboplatin. In other examples, the
chemotherapeutic agent is geldanamycin or an analog thereof, such
as 17-AAG or 17-DMAG.
[0122] B. Reduction of Cytotoxicity to Non-Cancer Cells
[0123] The disclosed methods reduce or inhibit (or in some examples
even prevent) cytotoxicity of chemotherapeutic agents (such as DNA
damaging agents) to non-cancer cells. In some embodiments, the
methods include administering to a subject with cancer an agent
that inhibits CD47 signaling and one or more chemotherapeutic
agents, including but not limited to anthracycline, antimetabolite,
or topoisomerase inhibitor chemotherapeutics. In additional
embodiments, the methods also include detecting a reduction of
cytotoxicity of the chemotherapeutic agent to non-cancer cells in
the subject. In other embodiments, the methods further include
selecting a subject at risk for cytotoxicity of the
chemotherapeutic agent, for example, a subject at risk for
cardiotoxicity of the chemotherapeutic agent.
[0124] In some embodiments, the disclosed methods reduce
cytotoxicity of the chemotherapeutic agent to non-cancer cells as
compared to a subject or a population of subjects administered the
chemotherapeutic agent(s) without an agent that inhibits CD47
signaling. In some examples, administration of an agent that
inhibits CD47 signaling and a chemotherapeutic agent may produce
fewer or less severe symptoms of cytotoxicity to non-cancer cells
than those observed in a subject or population of subjects
administered the chemotherapeutic agent without an agent that
inhibits CD47 signaling. In other examples, administration of an
agent that inhibits CD47 signaling and a chemotherapeutic agent may
produce fewer or less severe symptoms of cytotoxicity to non-cancer
cells than those observed in the same subject administered the
chemotherapeutic agent without an agent that inhibits CD47
signaling. In some examples, the cytotoxicity to non-cancer cells
is reduced by at least 10% (such as at least 15%, 20%, 30%, 40%,
50%, 60%, 70%, 80%, 90%, 95%, or 100%) as compared to a control or
a subject or population of subjects administered the
chemotherapeutic agent without the inhibitor of CD47 signaling.
[0125] One major side effect of several widely used
chemotherapeutic agents is cardiotoxicity. Although cardiotoxicity
is generally associated with anthracycline or anthracycline-like
chemotherapeutics, many other chemotherapeutics, including
capecitabine, 5-FU, cytarabine, paclitaxel, vinca alkaloids,
cyclophosphamide, ifosfamide, mitomycin C, tyrosine kinase
inhibitors (such as sorafenib, sunitinib, and imatinib),
trastuzumab, and bevacizumab, among others, also can result in
cardiotoxicity in subjects. In some examples, the cardiotoxicity
may be reversible, while in other examples, it may be
irreversible.
[0126] In some embodiments, administration of an agent that
inhibits CD47 signaling and a chemotherapeutic agent to a subject
with cancer reduces, inhibits, or even prevents cardiotoxicity in
the subject. Cardiotoxicity resulting from chemotherapy treatment
includes any toxicity that affects the heart and can include
electrophysiological abnormalities (such as ST and T wave changes,
T wave flattening, decreased QRS voltage, and/or increased QT
interval), cardiac arrhythmias (such as ventricular,
supraventricular, or junctional tachycardia; atrial flutter; and/or
atrial fibrillation), pericarditis, myocarditis, left ventricular
dysfunction, cardiomyopathy, congestive heart failure, ischemia,
hypotension or hypertension, cardiogenic shock, and myocardial
fibrosis. Administration of an agent that inhibits CD47 signaling
and a chemotherapeutic agent (for example, before, during, or after
administration of the chemotherapeutic agent) reduces
cardiotoxicity of the chemotherapeutic agent. In some examples,
administration of an agent that inhibits CD47 signaling and a
chemotherapeutic agent reduces signs and symptoms of
cardiotoxicity, such as electrophysiological abnormalities, cardiac
arrhythmias, left ventricular dysfunction, heart failure, and/or
biochemical markers of cardiotoxicity. The disclosed methods may in
some embodiments include detecting cardiotoxicity (such as a
reduction in cardiotoxicity) in a subject administered an agent
that inhibits CD47 signaling and a chemotherapeutic agent.
[0127] In some examples, the disclosed methods include selecting a
subject at risk for (such as at increased risk for) cardiotoxicity
of a chemotherapeutic agent and administering to the selected
subject an agent that inhibits CD47 signaling and a
chemotherapeutic agent (in either order or concurrently). Risk
factors for cardiotoxicity from a chemotherapeutic agent include
previous cardiovascular disease and/or hypertension, age,
cumulative chemotherapy dose, and dosing schedule. However, risk
factors vary to some extent depending upon the type of
chemotherapeutic agent. For example, risk factors for anthracycline
and anthracycline-like chemotherapeutic agents include cumulative
dose of greater than 400 mg/m.sup.2 (for example, greater than 550
mg/m.sup.2, greater than 700 mg/m.sup.2, or greater than 1000
mg/m.sup.2), administration of more than 50 mg/m.sup.2 dose per
day, age of less than 4 years, increasing age, female patient,
previous history of cardiovascular disease or hypertension, and
mediastinal irradiation (for example pre-treatment with mediastinal
irradiation). The main risk factor for cardiotoxicity in subjects
treated with alkylating agents (such as cyclophosphamide,
ifosfamide, or mitomycin) is dose (for example, greater than about
1.5 g/m.sup.2/day for cyclophosphamide or greater than about 20-30
g/m.sup.2 cumulative dose for ifosfamide or mitomycin). For 5-FU,
the risk factors include high dose (for example greater than 800
mg/m.sup.2), continuous infusion administration (rather than bolus
administration), history of cardiovascular disease, and previous
mediastinal irradiation. One of ordinary skill in the art can
identify subjects at increased risk for cardiotoxicity from
chemotherapy based on the type of chemotherapy, the subject's prior
history, the planned course of treatment, and other factors. Such
subjects can be selected for treatment with the disclosed methods
in order to reduce cardiotoxicity of a chemotherapeutic agent. See,
e.g., Gharib and Burnett, Eur. J. Heart Failure 4:235-242,
2002.
[0128] Methods for detecting cardiotoxicity of a chemotherapeutic
agent (including a reduction in cardiotoxicity) include monitoring
cardiac function of a subject before, during, and/or after
administration of a chemotherapeutic agent with or without
administration of an agent that inhibits CD47 signaling. In some
examples, detecting cardiotoxicity includes detecting changes in
one or more parameters of an electrocardiogram (ECG), including but
not limited to ST and T wave changes, T wave flattening, decreased
QRS voltage or prolongation of the QT interval. Detecting normal
ECG parameters or an improvement in ECG parameter in the subject
(for example in comparison to a control population or in the
subject during or after treatment) indicates a reduction of
cardiotoxicity. In other examples, detecting cardiotoxicity of a
chemotherapeutic agent includes detecting a cardiac arrhythmia in
the subject, such as ventricular, supraventricular, or junctional
tachycardia, atrial flutter, or atrial fibrillation. Detecting
normal cardiac rhythm or an improvement in cardiac rhythm in the
subject (for example in comparison to a control population or in
the subject during or after treatment) indicates a reduction of
cardiotoxicity. In further examples, detecting cardiotoxicity
includes measuring left ventricular ejection fraction (LVEF).
Detecting a decrease in LVEF (for example in comparison to a
control population or in the subject prior to treatment) indicates
that cardiotoxicity is present, while maintenance of LVEF or an
improvement in LVEF (for example in comparison to a control
population or in the subject during or after treatment) indicates a
reduction of cardiotoxicity. In additional examples, detecting
cardiotoxicity includes measuring one or more biochemical markers
of cardiotoxicity in the subject, such as circulating cardiac
troponins and/or cardiac natriuretic peptides. Detecting an
increase in cardiac troponin I and/or cardiac troponin T in a
subject indicates cardiotoxicity, while a decrease in cardiac
troponin I and/or cardiac troponin T (for example, in comparison to
a population or reference value or in the subject during or after
treatment) indicates a reduction in cardiotoxicity. Similarly,
detecting an increase in cardiac natriuretic peptides (such as B
type natriuretic peptide) in a subject indicates cardiotoxicity,
while a decrease in cardiac natriuretic peptides (for example, in
comparison to a population or reference value or in the subject
during or after treatment) indicates a reduction in cardiotoxicity.
See, e.g., Gharib and Burnett, Eur. J. Heart Failure 4:235-242,
2002; Dolci et al., Am. J. Clin. Pathol. 130:688-695, 2008. In some
examples, the cardiotoxicity is reduced by at least 10% (such as at
least 15%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100%) as
compared to a control or a subject or population of subjects
administered the chemotherapeutic agent without the inhibitor of
CD47 signaling.
[0129] Additional cytotoxicities produced by chemotherapeutic
agents include myelosuppression (for example, anemia, leukopenia,
neutropenia, or thrombocytopenia), alopecia, gastrointestinal
distress (such as nausea, vomiting, or diarrhea), and peripheral
neuropathy. These cytotoxicities, especially when severe, can limit
the aggressiveness of treatment, requiring dose reduction or change
in therapy. Thus, in some examples, the methods disclosed herein
may also be used to reduce cytotoxicity of chemotherapeutic agents
to non-cancer cells, thereby reducing the number, severity, or
presence of symptoms of one or more of anemia, leukopenia,
neutropenia, thrombocytopenia, alopecia, nausea, vomiting,
diarrhea, or peripheral neuropathy. In some examples, the disclosed
methods further include detecting myelosuppression (such as a
reduction in myelosuppression) in a subject administered an
inhibitor of CD47 signaling and a chemotherapeutic agent. Methods
for detecting myelosuppression caused by a chemotherapeutic agent
(including a reduction in myelosuppression) include monitoring
blood cell counts (such as neutrophil counts, platelet counts, red
blood cell counts, hematocrit, or hemoglobin). In some examples,
the disclosed methods include selecting a subject at risk for (such
as at increased risk for) myelosuppression from a chemotherapeutic
agent and administering to the selected subject an agent that
inhibits CD47 signaling and a chemotherapeutic agent (in either
order or concurrently). Risk factors for myelosuppression from a
chemotherapeutic agent include age, nutritional status, surgery,
cumulative chemotherapy dose, and dosing schedule. Subjects having
cancers involving bone marrow (such as leukemias and multiple
myeloma) are also at elevated risk for myelosuppression. However,
risk factors vary to some extent depending upon the type of
chemotherapeutic agent.
[0130] In additional examples, the disclosed methods reduce
nephrotoxicity of chemotherapeutic agents (for example,
nephrotoxicity of cisplatin, carboplatin, ifosfamide, or
methotrexate). In some examples, nephrotoxicity is detected by
presence of reduced glomerular filtration rate, tubular injury,
renal insufficiency, and/or proteinuria. In other examples, the
disclosed methods reduce hepatotoxicity of chemotherapeutic agents
(for example, hepatotoxicity of 5-FU, floxuridine, irinotecan,
oxaliplatin, cisplatin, or methotrexate). Hepatotoxicity may be
detected by presence of elevated liver enzymes, elevated bilirubin,
steatosis, steatohepatitis, or sinusoidal obstruction syndrome.
See, e.g., King and Perry, Oncologist 6:162-176, 2001; Jones et
al., Pediatr. Blood Cancer 51:724-731, 2008. In some embodiments,
the disclosed methods further include detecting nephrotoxicity
and/or hepatotoxicity (or a reduction thereof) in a subject
administered an inhibitor of CD47 signaling and a chemotherapeutic
agent.
[0131] C. Increasing Cytotoxicity to Cancer Cells
[0132] The disclosed methods also increase cytotoxicity of
chemotherapeutic agents (such as DNA damaging chemotherapy agents)
to cancer cells (e.g., decreasing cancer cell viability, increasing
cancer cell death, and/or increasing anti-tumor effects). In some
embodiments, the methods include administering to a subject with
cancer an agent that inhibits CD47 signaling and one or more
chemotherapeutic agents (in either order or concurrently) to
increase the cytotoxic effects of the chemotherapeutic agent(s) to
cancer cells. In some examples, the cytotoxic effects of the
chemotherapeutic agent to cancer cells include decreasing tumor
size (for example, tumor volume and/or tumor weight), tumor number
(for example, number of primary tumors or number of tumor
metastases), occurrence, number, or size of tumor metastases, or
tumor recurrence. Cytotoxic effects of the chemotherapeutic agent
to cancer cells may also include decreasing number of cancer cells,
such as number of solid tumor or hematological cancer cells in the
subject. Cytotoxicity to cancer cells and/or anti-tumor effects of
the chemotherapeutic agent may also include decreasing the signs
and/or symptoms of a tumor or cancer in the subject. An increase in
cytotoxicity of the chemotherapeutic agent to cancer cells in the
subject may also include increasing survival of the subject (for
example, increasing overall survival, recurrence-free survival,
and/or metastasis-free survival).
[0133] In some embodiments, the disclosed methods increase the
cytotoxicity of a chemotherapeutic agent to cancer cells compared
to the subject treated with the chemotherapeutic agent alone or
compared to a subject or a population of subjects administered the
chemotherapeutic agent without an agent that inhibits CD47
signaling.
[0134] In some examples, administration of an agent that inhibits
CD47 signaling and a chemotherapeutic agent decreases tumor size,
tumor number, number of cancer cells, occurrence or size of
metastases, or tumor recurrence in the subject compared to the same
subject prior to treatment or after administration of the
chemotherapeutic agent without an agent that inhibits CD47
signaling. In other examples, administration of an agent that
inhibits CD47 signaling and a chemotherapeutic agent decreases
tumor size, tumor number, number of cancer cells, occurrence of
metastases, or tumor recurrence in the subject compared to a
subject or population of subjects administered the chemotherapeutic
agent without an agent that inhibits CD47 signaling. In some
examples, tumor size, tumor number, number of cancer cells,
occurrence, size, or number of metastases, or tumor recurrence or
number of recurrences is reduced by at least 10% (such as at least
15%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or 100%) as
compared to a control or a subject or population of subjects
administered the chemotherapeutic agent without the inhibitor of
CD47 signaling. In some examples, the methods further include
detecting an increase in cytotoxicity of the chemotherapeutic agent
to cancer cells as compared to a control, for example by detecting
tumor size, tumor number, number of cancer cells, occurrence or
size of metastases, or tumor recurrence in a subject administered
the chemotherapeutic agent.
[0135] In particular non-limiting embodiments, the methods include
increasing the cytotoxicity of an anthracycline or
anthracycline-like chemotherapeutic agent to cancer cells by
administering to a subject with cancer an agent that inhibits CD47
signaling and one or more anthracycline or anthracycline-like
chemotherapeutic agents (in either order or concurrently). In
particular examples, the anthracycline or anthracycline-like
chemotherapeutic agent includes doxorubicin (standard or liposomal
formulation), daunorubicin (standard or liposomal formulation),
epirubicin, valrubicin, idarubicin, pirarubicin, vosaroxin, or
mitoxantrone. In other non-limiting examples, the methods include
increasing cytotoxicity of topoisomerase inhibitors (such as
camptothecin, 10-hydroxycamptothecin, irinotecan, SN-38, topotecan,
rebeccamycin, or etoposide), or antimetabolite agents (such as
5-fluorouracil, gemcitabine, capecitabine, cytrarabine,
methotrexate, or pemetrexed) to cancer cells.
IV. Inhibitors of CD47 Signaling
[0136] The disclosed methods include inhibiting or blocking CD47
signaling (such as CD47/TSP1 signaling), for example to reduce
cytotoxicity of a chemotherapeutic agent to non-cancer cells or to
increase anti-tumor effects (e.g., cytotoxicity to cancer cells) of
a chemotherapeutic agent. In some examples, the inhibitor of CD47
signaling inhibits TSP1-dependent signaling. In various
embodiments, inhibiting CD47 signaling includes one or more of
inhibiting the expression of CD47, inhibiting the expression of
TSP1, removing endogenous TSP1 or CD47, or blockading or inhibiting
the interaction between endogenous TSP1 and CD47.
[0137] Agents that block or inhibit CD47 signaling include but are
not limited to peptides, antibodies, antisense oligonucleotides,
morpholinos, or small molecule inhibitors. The agent that inhibits
CD47 signaling includes, in various embodiments, a synthetic
peptide having specific binding affinity for CD47; a synthetic
peptide having specific binding affinity for TSP1; an
oligonucleotide comprising at least about 15 contiguous bases and
that hybridizes to the mRNA of CD47 under high stringency
conditions; an oligonucleotide comprising at least about 15
contiguous bases and that hybridizes to the mRNA of TSP1 under high
stringency conditions; an isolated or recombinant TSP1 or CD47
molecule or soluble fragment thereof, or molecule that binds
thereto; an agent that decreases the expression of CD47; an agent
that decreases the expression of TSP1; an agent that enhances the
proteolysis of CD47; an agent that enhances the proteolysis of
TSP1; an agent that enhances removal of CD47 from the cell surface;
a CD47 antagonist; an antibody that specifically binds TSP1; an
antibody that specifically binds CD47; or a mixture of two or more
thereof. Exemplary inhibitors of CD47 signaling include those
described in U.S. Pat. No. 8,236,313 and International Pat. Publ.
No. WO 2010/017332, both of which are incorporated herein by
reference in their entirety.
[0138] A. Suppression of Protein Expression
[0139] In some embodiments, inhibition or blockade of CD47
signaling is achieved by reducing or suppressing TSP1 or CD47
protein expression, for example in methods of reducing cytotoxicity
of a chemotherapeutic agent to non-cancer cells or increasing
cytotoxicity of a chemotherapeutic agent to cancer cells, such as
exemplified herein.
[0140] Although the mechanism by which antisense RNA molecules
interfere with gene expression has not been fully elucidated, it is
believed that antisense RNA molecules (or fragments thereof) bind
to the endogenous mRNA molecules and thereby inhibit translation or
splicing of the endogenous mRNA or result in its degradation. A
reduction of protein expression in a cell may be obtained by
introducing into cells an antisense construct based on TSP1 or CD47
encoding sequences, including the human (or other mammalian) TSP1
cDNA or CD47cDNA or gene sequence or flanking regions thereof. For
antisense suppression, a nucleotide sequence from a TSP1- or
CD47-encoding sequence, for example all or a portion of a TSP1 cDNA
or gene or all or a portion of a CD47cDNA or gene, is arranged in
reverse orientation relative to the promoter sequence in the
transformation vector. One of ordinary skill in the art will
understand how other aspects of the vector may be chosen.
[0141] The introduced sequence need not be the full length of the
cDNA or gene, or reverse complement thereof, and need not be
exactly homologous to the equivalent sequence found in the cell
type to be transformed. Generally, however, where the introduced
sequence is of shorter length, a higher degree of homology to the
native target sequence will be needed for effective antisense
suppression. The introduced antisense sequence in the vector may be
at least 15 nucleotides in length, and improved antisense
suppression will typically be observed as the length of the
antisense sequence increases. The length of the antisense sequence
in the vector advantageously may be greater than about 20
nucleotides, greater than about 30 nucleotides, or greater than
about 100 nucleotides. For suppression of the TSP1 gene itself,
transcription of an antisense construct results in the production
of RNA molecules that are the reverse complement of mRNA molecules
transcribed from the endogenous TSP1 gene in the cell. For
suppression of the CD47 gene itself, transcription of an antisense
construct results in the production of RNA molecules that are the
reverse complement of mRNA molecules transcribed from the
endogenous CD47 gene in the cell.
[0142] Suppression of endogenous TSP1 or CD47 expression can also
be achieved using ribozymes. Ribozymes are synthetic molecules that
possess highly specific endoribonuclease activity. The production
and use of ribozymes are disclosed in U.S. Pat. Nos. 4,987,071,
5,543,508. The inclusion of ribozyme sequences within antisense
RNAs may be used to confer RNA cleaving activity on the antisense
RNA, such that endogenous mRNA molecules that bind to the antisense
RNA are cleaved, which in turn leads to an enhanced antisense
inhibition of endogenous gene expression.
[0143] Suppression can also be achieved using RNA interference,
using known and previously disclosed methods. Several models have
been put forward to explain RNAi, in particular the mechanisms by
which the cleavage derived small dsRNAs or siRNAs interact with the
target mRNA and thus facilitate its degradation (Hamilton et al.,
Science 286:950, 1999; Zamore et al., Cell 101:25, 2000; Hammond et
al., Nature 404:293, 2000; Yang et al., Curr. Biol. 10:1191, 2000;
Elbashir et al., Genes Dev. 15:188, 2001; Bass Cell 101:235, 2000).
It has been proposed that the cleavage derived small dsRNAs or
siRNAs act as a guide for the enzymatic complex required for the
sequence specific cleavage of the target mRNA. Evidence for this
includes cleavage of the target mRNA at regular intervals of about
21-23 nucleotides in the region corresponding to the input dsRNA
(Zamore et al., Cell 101, 25, 2000), with the exact cleavage sites
corresponding to the middle of sequences covered by individual 21
or 22 nucleotide small dsRNAs or siRNAs (Elbashir et al., Genes
Dev. 15:188, 2001). Although mammals and lower organisms appear to
share dsRNA-triggered responses that involve a related intermediate
(small dsRNAs), it is likely that there will be differences as well
as similarities in the underlying mechanism. dsRNAs can be formed
from RNA oligomers produced synthetically (for technical details
see material from the companies Xeragon and Dharmacon, both
available on the internet). Small dsRNAs and siRNAs can also be
manufactured using standard methods of in vitro RNA production. In
addition, the Silencer.TM. siRNA Construction kit (and components
thereof) available from Ambion (Catalog #1620; Austin, Tex.), which
employs a T7 promoter and other well-known genetic engineering
techniques to produce dsRNAs. Double stranded RNA triggers could
also be expressed from DNA based vector systems.
[0144] Inhibition also can be accomplished using stabilized nucleic
acid molecules, including morpholino oligonucleotides, for instance
as described herein. The stabilized nucleic acid can be delivered
directly to cells (for example, in vitro) or can be administered to
a subject as herein described. In particular embodiments, the
stabilized nucleic acid molecule is an antisense morpholino
oligonucleotide complementary to CD47 (such as human and/or murine
CD47) or TSP1 (such as human and/or murine TSP1). One non-limiting
example is a CD47 morpholino with the nucleic acid sequence
CGTCACAGGCAGGACCCACTGCCCA (SEQ ID NO: 3).
[0145] The nucleic acids and nucleic acid analogs that are used to
suppress endogenous TSP1 or CD47 expression may be modified
chemically or biochemically or may contain one or more non-natural
or derivatized nucleotide bases, as will be readily appreciated by
those of ordinary skill in the art. Such modifications include, for
example, labels, methylation, substitution of one or more of the
naturally occurring nucleotides with an analog, internucleotide
modifications, such as uncharged linkages (for example, methyl
phosphonates, phosphotriesters, phosphoramidates, carbamates,
etc.), charged linkages (for example, phosphorothioates,
phosphorodithioates, etc.), pendent moieties (for example,
polypeptides), intercalators (for example, acridine, psoralen,
etc.), chelators, alkylators, and/or modified linkages (for
example, alpha anomeric nucleic acids, etc.). The term nucleic acid
molecule also includes any topological conformation, including
single-stranded, double-stranded, partially duplexed, triplexed,
hair-pinned, circular and padlocked conformations. Also included
are synthetic molecules that mimic polynucleotides in their ability
to bind to a designated sequence via hydrogen bonding and other
chemical interactions. Such molecules are known in the art and
include, for example, those in which peptide linkages substitute
for phosphate linkages in the backbone of the molecule.
[0146] Additionally, although particular exemplary sequences are
disclosed herein, one of ordinary skill in the art will appreciate
that the present methods also encompass sequence alterations of the
disclosed agents that yield the same results as described herein.
Such sequence alterations can include, but are not limited to,
deletions, base modifications, mutations, labeling, and
insertions.
[0147] Suppression of protein expression may also be achieved
through agents that enhance proteolysis of CD47 or TSP1 (see, e.g.,
Allen et al., Endocrinology 150:1321-1329, 2009). In other
particular examples, the suppression of CD47 expression involves an
agent that enhances the removal of CD47 from the cell surface or
decreases the transcription, mRNA processing, or translation of
CD47. Similar embodiments are envisioned, regarding suppression of
TSP1.
[0148] B. Suppression of Protein Activity
[0149] In some embodiments, inhibition or blockade of CD47
signaling is achieved by reducing or suppressing TSP1 or CD47
protein activity, for example in methods of reducing cytotoxicity
of a chemotherapeutic agent to non-cancer cells or increasing
cytotoxicity or anti-tumor effects of a chemotherapeutic agent,
such as exemplified herein.
[0150] In some examples, an inhibitor of CD47 signaling includes an
agent that decreases or blocks binding of a ligand (such as TSP1)
to CD47. The determination that an agent (such as an antibody or a
peptide) inhibits the association between TSP1 and CD47 may be
made, for example, using assays known to one of ordinary skill in
the art. For instance, the determination that an agent inhibits
TSP1 binding to purified or recombinant CD47 can be made by
comparing the binding activity alone with the binding activity in
the presence of the agent using a solid phase ligand binding assay.
An agent that inhibits the activity of TSP1 to signal through CD47
on cells will reduce the activity of a cGMP-dependent reporter in a
suitable transfected cell assay by a certain amount, for example,
by 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, or even by 100%. In
addition, an agent that inhibits the activity or CD47 or TSP1 can
be identified using any one of the assays described herein,
including, but not limited to, determining c-Myc expression in a
cell. An agent that inhibits CD47 signaling will increase c-Myc
expression (such as an increase in c-Myc mRNA or c-Myc protein) in
a cell or population of cells by a certain amount, for example by
20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 150%, 200%, 250%, or
more as compared to a suitable control.
[0151] Thus, in various embodiments an inhibitor of CD47 signaling
includes antibodies (such as monoclonal antibodies or humanized
antibodies) that specifically bind to CD47 or TSP1. In some
examples, an antibody that specifically binds CD47 is of use in the
methods disclosed herein. In other examples, an antibody that
specifically binds TSP1 is of use in the methods disclosed herein.
Antibodies that specifically bind to CD47 or TSP1 include
polyclonal antibodies, monoclonal antibodies, or humanized
monoclonal antibodies, or fragments thereof. Methods of
constructing such antibodies are known in the art (see, for
example, Green et al., "Production of Polyclonal Antisera," in:
Immunochemical Protocols, pages 1-5, Manson, ed., Humana Press,
1992; Coligan et al., "Production of Polyclonal Antisera in
Rabbits, Rats, Mice and Hamsters," in: Current Protocols in
Immunology, section 2.4.1, 1992; Kohler & Milstein, Nature
256:495, 1975; Coligan et al., sections 2.5.1-2.6.7; and Harlow et
al. in: Using Antibodies: a Laboratory Manual, Cold Spring Harbor
Pub., 1998). In addition, such antibodies may be commercially
available. In some examples, an inhibitor of CD47 signaling
includes an anti-CD47 antibody, such as anti-CD47 antibodies B6H12,
BRIC126, 6H9, Clkm1, OVTL16, OX101, or mIAP301 (also referred to as
ab301; Chang et al., Neuroscience 102:289-296, 2001; BD Biosciences
catalog no. 555297), a binding fragment of any one of these, or a
humanized version of any one of these, or an antibody or fragment
thereof that competes with B6H12, BRIC126, 6H9, Clkm1, OVTL16,
OX101, or mIAP301 for binding. In other examples, an inhibitor of
CD47 signaling includes an anti-TSP1 antibody, such as C6.7 (Dixit
et al., Proc. Natl. Acad. Sci. USA 82:3472-3476, 1985; Pierce
catalog no. MA5-13390), HB8432, D4.6, A65M, A4.1, A6.1, or SPM321,
a binding fragment of any one of these, or a humanized version of
any one of these, or an antibody or fragment thereof that competes
with C6.7, HB8432, D4.6, A65M, A4.1, A6.1 (e.g., Millipore catalog
no. BA24), or SPM321 for binding. It is to be understood that CD47
signaling inhibitors for use in the present disclosure also include
novel CD47 or TSP1 antibodies developed in the future.
[0152] In other embodiments, an inhibitor of CD47 signaling
includes a peptide that specifically binds to CD47 or TSP1. In some
examples an inhibitor of CD47 signaling is a CD47-binding peptide,
such as a TSP1-derived CD47-binding peptide. Exemplary CD47-binding
peptides include 7N3 (FIRVVMYEGKK; SEQ ID NO: 1) and 4N1 (also
known as 459; RFYVVMWK; SEQ ID NO: 2). Additional CD47-binding
peptides include those described in U.S. Pat. No. 8,236,313,
incorporated herein by reference in its entirety. It is to be
understood that CD47 signaling inhibitors for use in the present
disclosure also include novel CD47 or TSP1 binding peptides
developed in the future.
[0153] In additional embodiments, an inhibitor of CD47 signaling
includes a small molecule (such as a small organic molecule). Some
small molecule inhibitors may inhibit CD47 or TSP1 expression or
activity. It is to be understood that CD47 signaling inhibitors for
use in the present disclosure also include novel CD47 or TSP1 small
molecule inhibitors developed in the future.
[0154] C. Pharmaceutical Compositions
[0155] Pharmaceutical compositions that include at least one
inhibitor of CD47 signaling as described herein as an active
ingredient, or that include both an agent that inhibits CD47
signaling and an additional agent (such as a chemotherapeutic
agent) as active ingredients, may be formulated with an appropriate
solid or liquid carrier, depending upon the particular mode of
administration chosen.
[0156] A suitable administration format may best be determined by a
medical practitioner for each subject individually. Various
pharmaceutically acceptable carriers and their formulation are
described in standard formulation treatises, for example,
Remington: The Science and Practice of Pharmacy, The University of
the Sciences in Philadelphia, Editor, Lippincott, Williams, &
Wilkins, Philadelphia, Pa., 21st Edition (2005). See also Wang and
Hanson, J. Parenteral Sci. Technol., Technical Report No. 10, Supp.
42: 2S, 1988.
[0157] The dosage form of the pharmaceutical composition will be
determined by the mode of administration chosen. For instance, in
addition to injectable fluids, inhalational, topical, ophthalmic,
peritoneal, and oral formulations can be employed. Inhalational
preparations can include aerosols, particulates, and the like. In
general, the goal for particle size for inhalation is about 1 .mu.m
or less in order that the pharmaceutical reach the alveolar region
of the lung for absorption. Oral formulations may be liquid (for
example, syrups, solutions, or suspensions), or solid (for example,
powders, pills, tablets, or capsules). For solid compositions,
conventional non-toxic solid carriers can include pharmaceutical
grades of mannitol, lactose, starch, or magnesium stearate. Actual
methods of preparing such dosage forms are known, or will be
apparent, to those of ordinary skill in the art.
[0158] The compositions or pharmaceutical compositions can be
administered by any route, including parenteral administration, for
example, intravenous, intramuscular, intraperitoneal, intrasternal,
or intra-articular injection or infusion, or by transdermal,
sublingual, oral, topical, intra-nasal, ophthalmic, or transmucosal
administration, or by pulmonary inhalation. When the active
compounds are provided as parenteral compositions, for example, for
injection or infusion, they are generally suspended in an aqueous
carrier, for example, in an isotonic buffer solution at a pH of
about 3.0 to about 8.0, preferably at a pH of about 3.5 to about
7.4, 3.5 to 6.0, or 3.5 to about 5.0. Useful buffers include sodium
citrate-citric acid and sodium phosphate-phosphoric acid, and
sodium acetate/acetic acid buffers. A form of repository or depot
slow release preparation may be used so that therapeutically
effective amounts of the preparation are delivered into the
bloodstream over many hours or days following transdermal injection
or delivery.
[0159] Active compounds (e.g., peptides, proteins,
oligonucleotides, and so forth) are also suitably administered by
sustained-release systems. Suitable examples of sustained-release
formulations include suitable polymeric materials (such as, for
example, semi-permeable polymer matrices in the form of shaped
articles, for example, films, or microcapsules), suitable
hydrophobic materials (for example as an emulsion in an acceptable
oil) or ion exchange resins, and sparingly soluble derivatives
(such as, for example, a sparingly soluble salt). Sustained-release
compounds may be administered by intravascular, intravenous,
intra-arterial, intramuscular, subcutaneous, intra-pericardial, or
intra-coronary injection. Administration can also be oral, rectal,
parenteral, intracisternal, intravaginal, intraperitoneal, topical
(as by powders, ointments, gels, drops or transdermal patch),
buccal, or as an oral or nasal spray.
[0160] Preparations for administration can be suitably formulated
to give controlled release of the agent(s) (e.g., peptides,
antibodies, oligonucleotides or other compounds that block CD47
and/or TSP1 activity or interaction). For example, the
pharmaceutical compositions may be in the form of particles
comprising a biodegradable polymer and/or a polysaccharide
jellifying and/or bioadhesive polymer, an amphiphilic polymer, an
agent modifying the interface properties of the particles and a
pharmacologically active substance. These compositions exhibit
certain biocompatibility features that allow a controlled release
of the active substance. See, for example, U.S. Pat. No.
5,700,486.
[0161] In some embodiments, therapeutic agent(s) are delivered by
way of a pump (see Sefton, CRC Crit. Ref. Biomed. Eng. 14:201,
1987; Buchwald et al., Surgery 88:507, 1980; Saudek et al., N.
Engl. J. Med. 321:574, 1989) or by continuous subcutaneous
infusions, for example, using a mini-pump. An intravenous bag
solution may also be employed. The key factor in selecting an
appropriate dose is the result obtained, as measured by increases
or decreases in radioprotection, or by other criteria for measuring
control or prevention of disease, as are deemed appropriate by the
practitioner. Other controlled release systems are discussed in
Langer (Science 249:1527-1533, 1990).
[0162] In another aspect of the disclosure, therapeutic agent(s)
are delivered by way of an implanted pump, described, for example,
in U.S. Pat. Nos. 6,436,091, 5,939,380; and 5,993,414. Implantable
drug infusion devices are used to provide subjects with a constant
and long term dosage or infusion of a drug or any other therapeutic
agent. Essentially, such device may be categorized as either active
or passive.
[0163] Active drug or programmable infusion devices feature a pump
or a metering system to deliver the drug into the patient's system.
An example of such an active drug infusion device currently
available is the Medtronic SynchroMed.TM. programmable pump. Such
pumps typically include a drug reservoir, a peristaltic pump to
pump the drug out from the reservoir, and a catheter port to
transport the pumped out drug from the reservoir via the pump to a
patient's anatomy. Such devices also typically include a battery to
power the pump, as well as an electronic module to control the flow
rate of the pump. The Medtronic SynchroMed.TM. pump further
includes an antenna to permit the remote programming of the
pump.
[0164] Passive drug infusion devices, in contrast, do not feature a
pump, but rather rely upon a pressurized drug reservoir to deliver
the drug. Thus, such devices tend to be both smaller as well as
cheaper as compared to active devices. An example of such a device
includes the Medtronic IsoMed.TM. infusion system. This device
delivers the drug into the patient through the force provided by a
pressurized reservoir applied across a flow control unit.
[0165] The implanted pump can be completely implanted under the
skin of a subject, thereby negating the need for a percutaneous
catheter. These implanted pumps can provide the patient with
therapeutic agent(s) at a constant or a programmed delivery rate.
Constant rate or programmable rate pumps are based on either
phase-change or peristaltic technology. When a constant, unchanging
delivery rate is required, a constant-rate pump is well suited for
long-term implanted drug delivery. If changes to the infusion rate
are expected, a programmable pump may be used in place of the
constant rate pump system. Osmotic pumps may be much smaller than
other constant rate or programmable pumps, because their infusion
rate can be very low. An example of such a pump is described listed
in U.S. Pat. No. 5,728,396.
[0166] The therapeutic agents may also be delivered passively and
in sustained fashion as part of and incorporated into implantable
devices, such as vascular stents which can be placed directly into
diseased blood vessels through several standard approaches,
including direct surgical insertion or percutaneously with
angiographic control.
[0167] For oral administration, the pharmaceutical compositions can
take the form of, for example, tablets or capsules prepared by
conventional means with pharmaceutically acceptable excipients such
as binding agents (for example, pre-gelatinized maize starch,
polyvinylpyrrolidone or hydroxypropyl methylcellulose); fillers
(for example, lactose, microcrystalline cellulose or calcium
hydrogen phosphate); lubricants (for example, magnesium stearate,
talc or silica); disintegrants (for example, potato starch or
sodium starch glycolate); or wetting agents (for example, sodium
lauryl sulfate). The tablets can be coated by methods well known in
the art. Liquid preparations for oral administration can take the
form of, for example, solutions, syrups or suspensions, or they can
be presented as a dry product for constitution with water or other
suitable vehicle before use. Such liquid preparations can be
prepared by conventional means with pharmaceutically acceptable
additives such as suspending agents (for example, sorbitol syrup,
cellulose derivatives or hydrogenated edible fats); emulsifying
agents (for example, lecithin or acacia); non-aqueous vehicles (for
example, almond oil, oily esters, ethyl alcohol or fractionated
vegetable oils); and preservatives (for example, methyl or
propyl-p-hydroxybenzoates or sorbic acid). The preparations can
also contain buffer salts, flavoring, coloring, and sweetening
agents as appropriate.
[0168] For administration by inhalation, the compounds for use
according to the present disclosure are conveniently delivered in
the form of an aerosol spray presentation from pressurized packs or
a nebulizer, with the use of a suitable propellant, for example,
dichlorodifluoromethane, trichlorofluoromethane,
dichlorotetrafluoroethane, carbon dioxide or other suitable gas. In
the case of a pressurized aerosol, the dosage unit can be
determined by providing a valve to deliver a metered amount.
Capsules and cartridges for use in an inhaler or insufflator can be
formulated containing a powder mix of the compound and a suitable
powder base such as lactose or starch.
[0169] For topical administration, the compounds can be, for
example, mixed with a liquid delivery agent for administration
locally. The agents used therapeutically (such as peptides,
antibodies and morpholinos) are readily soluble or suspendable in
water and saline, and as such these would be useful for delivery
since water or saline do not cause adverse biological tissue
effects. This allows sufficiently high doses to be administered
locally or systemically, without secondary toxicity from the
delivery vehicle.
[0170] Pharmaceutical compositions that comprise at least one
therapeutic agent (such as an inhibitor of CD47 signaling) as
described herein as an active ingredient will normally be
formulated with an appropriate solid or liquid carrier, depending
upon the particular mode of administration chosen. The
pharmaceutically acceptable carriers and excipients useful in this
disclosure are conventional. For instance, parenteral formulations
usually comprise injectable fluids that are pharmaceutically and
physiologically acceptable fluid vehicles such as water,
physiological saline, other balanced salt solutions, aqueous
dextrose, glycerol or the like. Excipients that can be included
are, for instance, proteins, such as human serum albumin or plasma
preparations. If desired, the pharmaceutical composition to be
administered may also contain minor amounts of non-toxic auxiliary
substances, such as wetting or emulsifying agents, preservatives,
and pH buffering agents and the like, for example sodium acetate or
sorbitan monolaurate. Actual methods of preparing such dosage forms
are known, or will be apparent, to those skilled in the art.
[0171] For example, for parenteral administration, agent(s) can be
formulated generally by mixing them at the desired degree of
purity, in a unit dosage injectable form (solution, suspension, or
emulsion), with a pharmaceutically acceptable carrier, for
instance, one that is non-toxic to recipients at the dosages and
concentrations employed and is compatible with other ingredients of
the formulation. A pharmaceutically acceptable carrier is a
non-toxic solid, semisolid or liquid filler, diluent, encapsulating
material or formulation auxiliary of any type.
[0172] Generally, the formulations are prepared by contacting the
agent(s) each uniformly and intimately with liquid carriers or
finely divided solid carriers or both. Then, if necessary, the
product is shaped into the desired formulation. Optionally, the
carrier is a parenteral carrier, and in some embodiments it is a
solution that is isotonic with the blood of the recipient. Examples
of such carrier vehicles include water, saline, Ringer's solution,
and dextrose solution. Non-aqueous vehicles such as fixed oils and
ethyl oleate are also useful herein, as well as liposomes.
[0173] The pharmaceutical compositions that comprise at least one
therapeutic agent, in some embodiments, will be formulated in unit
dosage form, suitable for individual administration of precise
dosages. The amount of active compound(s) administered will be
dependent on the subject being treated, the severity of the
affliction, and the manner of administration, and is best left to
the judgment of the prescribing clinician. Within these bounds, the
formulation to be administered will contain a quantity of the
active component(s) in amounts effective to achieve the desired
effect in the subject being treated. The therapeutically effective
amount of an agent that inhibits CD47 signaling, such as a peptide,
antibody, or oligonucleotide (e.g., morpholino or other antisense
molecule) will be dependent on the peptide or inhibitor utilized,
the subject being treated, the severity and type of the affliction,
and the manner of administration. The exact dose is readily
determined by one of skill in the art based on the potency of the
specific compound, the age, weight, sex and physiological condition
of the subject.
[0174] The peptides/proteins of the present disclosure (for
example, CD47 or TSP1 peptides, or a peptide that inhibits or
alters binding between TSP1 and CD47, including a peptide from an
antibody or an artificial antibody with this functional
characteristic, or a peptide or protein that inhibits the
expression or activity of either of these proteins) also can be
administered as naked DNA encoding the peptide or protein. To
simplify the manipulation and handling of the nucleic acid encoding
the peptide, the nucleic acid is generally inserted into a
cassette, where it is operably linked to a promoter. Preferably,
the promoter is capable of driving expression of the protein in
cells of the desired target tissue. The selection of appropriate
promoters can readily be accomplished. Preferably, the promoter is
a high expression promoter, for example the 763-base-pair
cytomegalovirus (CMV) promoter, the Rous sarcoma virus (RSV)
promoter (Davis et al., Hum. Gene. Ther. 4:151-159, 1993), or the
MMT promoter.
[0175] Other elements that enhance expression also can be included,
such as an enhancer or a system that results in high levels of
expression, such as a tat gene or tar element. This cassette is
inserted into a vector, for example, a plasmid vector such as
pUC118, pBR322, or other known plasmid vector, that includes, for
example, an E. coli origin of replication. See, Sambrook, et al.,
Molecular Cloning: A Laboratory Manual, Cold Spring Harbor
Laboratory Press (1989). The plasmid vector may also include a
selectable marker such as the .beta.-lactamase gene for ampicillin
resistance, provided that the marker polypeptide does not adversely
affect the metabolism of the organism being treated. The cassette
also can be bound to a nucleic acid binding moiety in a synthetic
delivery system, such as the system disclosed in PCT publication WO
95/22618.
[0176] Optionally, the DNA may be used with a microdelivery vehicle
such as cationic liposomes and adenoviral vectors. (For a review of
the procedures for liposome preparation, targeting and delivery of
contents, see Mannino and Gould-Fogerite, BioTechniques, 6:682,
1988); Feigner and Holm, Bethesda Res. Lab. Focus, 11(2):21, 1989);
and Maurer, Bethesda Res. Lab. Focus, 11(2):25, 1989).
Replication-defective recombinant adenoviral vectors can be
produced in accordance with known techniques. (See Quantin, et al.,
Proc. Natl. Acad. Sci. USA, 89:2581-2584, 1992;
Stratford-Perricadet, et al., J. Clin. Invest., 90:626-630,1992;
and Rosenfeld, et al., Cell, 68:143-155, 1992).
[0177] The effective dose of the nucleic acid will be a function of
the particular expressed protein, the target tissue, the subject,
and his or her clinical condition. Effective amounts of DNA are
between about 1 and 4000 .mu.g, or about 1000 and 2000 .mu.g, or
between about 2000 and 4000 .mu.g. In certain situations, it is
desirable to use nucleic acids encoding two or more different
proteins in order to optimize the therapeutic outcome. For example,
DNA encoding a therapeutic peptide, such as a CD47 or TSP1 peptide
(for example, peptide p7N3 FIRVVMYEGKK (SEQ ID NO: 1) or peptide
4N1): RFYVVMWK (SEQ ID NO: 2)) can be used. Alternatively, DNA
encoding a CD47 or TSP1 peptide can be combined with other genes or
their encoded gene products to enhance the activity of targeted
cells.
[0178] In order to facilitate injection, the nucleic acid is
formulated with a pharmaceutically acceptable carrier. Examples of
suitable carriers include, but are not limited to, saline, albumin,
dextrose and sterile water. The nucleic acid is injected into the
ischemic tissue using standard injection techniques by use of, for
example, a hypodermic needle, for example a hypodermic needle size
between No. 29 and No. 16. The nucleic acid also may be injected by
an externally applied local injection apparatus, such as that used
to inject antigens for allergy testing; or a transcutaneous patch
capable of delivery to subcutaneous muscle. The nucleic acid is
injected at one site, or at multiple sites throughout the ischemic
tissue.
[0179] Once injected, the nucleic acid capable of expressing the
desired protein or peptide is taken up and expressed by the cells
of the tissue. Because the vectors containing the nucleic acid of
interest are not normally incorporated into the genome of the
cells, expression of the protein of interest takes place for only a
limited time. Typically, the peptide or protein is only expressed
at therapeutic levels for about two days to several weeks,
preferably for about one to two weeks. Reinjection of the DNA can
be utilized to provide additional periods of expression of the
peptide or protein. If desired, use of a retrovirus vector to
incorporate the heterologous DNA into the genome of the cells will
increase the length of time during which the therapeutic
polypeptide is expressed, from several weeks to indefinitely.
[0180] The therapeutic agents can also be administered directly as
part of a surgical or other medical procedure, or at the bedside by
a treating physician. Drug quality product (e.g., peptide, antibody
or morpholino) can be diluted for instance in sterile saline and
given by injection using sterile 1 cc syringes and small bore
needles (25 gauge and less) to a subject in need of treatment.
Precise control and localization of therapeutic effects can thus be
obtained.
[0181] Controlled release parenteral formulations can be made as
implants, oily injections, or as particulate systems. For a broad
overview of protein delivery systems, see Banga, Therapeutic
Peptides and Proteins: Formulation, Processing, and Delivery
Systems, Technomic Publishing Company, Inc., Lancaster, Pa., 1995.
Particulate systems include microspheres, microparticles,
microcapsules, nanocapsules, nanospheres, and nanoparticles.
Microcapsules contain the therapeutic peptide as a central core. In
microspheres, the therapeutic agent is dispersed throughout the
particle. Particles, microspheres, and microcapsules smaller than
about 1 .mu.m are generally referred to as nanoparticles,
nanospheres, and nanocapsules, respectively. Capillaries have a
diameter of approximately 5 .mu.m so that only nanoparticles are
administered intravenously. Microparticles are typically around 100
.mu.m in diameter and are administered subcutaneously or
intramuscularly (see Kreuter, Colloidal Drug Delivery Systems, J.
Kreuter, ed., Marcel Dekker, Inc., New York, N.Y., pp. 219-342,
1994; Tice & Tabibi, Treatise on Controlled Drug Delivery, A.
Kydonieus, ed., Marcel Dekker, Inc. New York, N.Y., pp. 315-339,
1992).
[0182] Also contemplated is the use of nanoparticles as delivery
agents, which can be targeted to specific cells, tissues or organ
for instance by incorporation on their surface ligands of receptors
specific in their expression to the targeted cells, tissues or
organs, The targeting entity can be the same or different than the
therapeutically active agent carried by the nanoparticle. Further,
distribution of nanoparticles to certain tissues spaces (e.g. the
blood versus the central nervous system protected by the
blood-brain barrier) can be determined by altering the size of the
nanoparticles thereby allowing or preventing their transit of such
barriers between tissue compartments.
[0183] Polymers can be used for ion-controlled release. Various
degradable and nondegradable polymeric matrices for use in
controlled drug delivery are known in the art (Langer, Accounts
Chem. Res. 26:537, 1993). For example, the block copolymer,
polaxamer 407 exists as a viscous yet mobile liquid at low
temperatures but forms a semisolid gel at body temperature. It has
shown to be an effective vehicle for formulation and sustained
delivery of recombinant interleukin-2 and urease (Johnston et al.,
Pharm. Res. 9:425, 1992; Pec, J. Parent. Sci. Tech. 44(2):58,
1990). Alternatively, hydroxyapatite has been used as a
microcarrier for controlled release of proteins (ljntema et al.,
Int. J. Pharm. 112:215, 1994). In yet another aspect, liposomes are
used for controlled release as well as drug targeting of
lipid-capsulated compounds (Betageri et al., Liposome Drug Delivery
Systems, Technomic Publishing Co., Inc., Lancaster, Pa., 1993).
Numerous additional systems for controlled delivery of therapeutic
proteins are known (e.g., U.S. Pat. Nos. 5,055,303, 5,188,837,
4,235,871, 4,501,728, 4,837,028, 4,957,735, 5,019,369, 5,055,303,
5,514,670, 5,413,797, 5,268,164, 5,004,697, 4,902,505, 5,506,206,
5,271,961, 5,254,342, 5,534,496).
[0184] The specific form of the agents and their manner of
administration depends in part upon the particular tissue to be
treated. The compounds or pharmaceutical compositions containing
them can be applied, for example, as a mouthwash to coat the oral
mucosal tissue, as a spray or syringe to coat the mucosal tissues
of the nose and/or throat, or as a cream or paste, an enema, or
other forms of topical administration known to one of ordinary
skill in the art, as appropriate.
[0185] The amount of agent to be delivered, as well as the dosing
schedule necessary to provide the desired effects, will be
influenced by the bioavailability of the specific compound selected
(and/or an active metabolite thereof), the type and extent of
chemotherapeutic dosage and schedule, and other factors that will
be apparent to those of skill in the art. The same dosage and
concentrations can be used when the agent that inhibits CD47
signaling is administered after chemotherapeutic treatment. The
administration (e.g., before, during, or after chemotherapy
treatment) may be used alone, or in any combination of two or all
three administrations, as needed.
V. Kits
[0186] Also disclosed herein are kits that can be used to reduce
cytotoxicity of a chemotherapeutic agent to non-cancer cells and/or
to increase anti-tumor effects of a chemotherapeutic agent. In some
embodiments, the kit includes one or more agent that blocks CD47
signaling (such as one or more of an anti-CD47 antibody or fragment
thereof, a CD47-binding peptide, a CD47 antisense oligonucleotide,
a CD47 morpholino, an anti-TSP1 antibody or fragment thereof, a
TSP1-binding peptide, a TSP1 antisense oligonucleotide, or a TSP1
morpholino) and a chemotherapeutic agent (such as an anthracycline
chemotherapeutic agent). In other embodiments, the kit includes a
small molecule capable of binding to CD47 or a small molecule
capable of binding to TSP1 and a chemotherapeutic agent.
[0187] In one example, the kit includes a CD47 morpholino, such as
a morpholino including the sequence of SEQ ID NO: 3 and a
chemotherapeutic agent (such as an anthracycline chemotherapeutic
agent, for example, daunorubicin or doxorubicin). In another
example, the kit includes an anti-CD47 antibody or fragment thereof
(such as monoclonal antibody MIAP301, monoclonal antibody OX101,
monoclonal antibody B6H12, or monoclonal antibody BRIC126) and a
chemotherapeutic agent (such as an anthracycline chemotherapeutic
agent, for example, daunorubicin or doxorubicin). In a further
example, the kit includes a CD47 binding peptide (such as a peptide
including the amino acid sequence of SEQ ID NO: 1 or SEQ ID NO: 2)
and a chemotherapeutic agent (such as an anthracycline
chemotherapeutic agent, for example, daunorubicin or doxorubicin).
In another example, the kit includes an anti-TSP1 antibody or
fragment thereof (such as monoclonal antibody A6.1 or monoclonal
antibody C6.7) and a chemotherapeutic agent (such as an
anthracycline chemotherapeutic agent, for example, daunorubicin or
doxorubicin).
[0188] The kits may further include additional components such as
instructional materials and additional reagents, for example
buffers or pharmaceutically acceptable carriers. The instructional
materials may be written, in an electronic form (such as a computer
diskette or compact disk), or may be visual (such as video
files).
[0189] The following examples are provided to illustrate certain
particular features and/or embodiments. These examples should not
be construed to limit the disclosure to the particular features or
embodiments described.
EXAMPLE 1
Blockade of CD47 Sensitizes Breast Tumors to Anthracycline
Chemotherapy and Protects Cardiovascular Tissue
Materials and Methods
[0190] Cell Culture: 4T1 mouse breast cancer cells or MDA-MB-231
human breast cancer cells were cultured in RPMI 1640 medium
supplemented with 10% FBS, penicillin/streptomycin, and glutamine
at 37.degree. C. and 5% CO.sub.2. For treatment with anthracycline,
doxorubicin was used at 10 .mu.g/mL. CD47 morpholino was used to
block CD47 expression at a 10 .mu.M dose.
[0191] Mouse Model: Balb/c mice were injected with 5.times.10.sup.3
4T1 breast cancer cells in the mammary fat pad. Tumors were left
untreated, treated with 100 .mu.l of 10 .mu.g/mL doxorubicin (Dox)
or with 10 .mu.g/mL Dox in combination with 10 .mu.M CD47
Morpholino (CD47 M). Doxorubicin treatment was given intravenously
weekly. Treatment with CD47 M was given intraperitoneally 48 hours
prior to doxorubicin injection.
[0192] Cell Survival: Cell viability was measured by 3-(4,5-d
imethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetr-
azolium (MTS) assay or lactate dehydrogenase (LDH) release and cell
death by terminal deoxynucleotidyl transferase dUTP nick end
labeling (TUNEL). LDH release was quantified in cell culture
supernatant using the CytoTox 96.RTM. Non-Radioactive Cytotoxicity
Assay following manufacturer's instructions (Promega, Catalog No.
G1780).
[0193] Immunohistochemistry: Staining of tissue sections was
performed as previously shown (Soto-Pantoja et al., Autophagy
8:1628-1642, 2012; Soto-Pantoja et al., Sci. Rep. 3:1038, 2013).
Briefly, slides were deparaffinized in xylene and rehydrated in
graded alcohol. Antigen retrieval was performed using microwave
antigen retrieval method with Target Retrieval Solution, pH 6.1
(Dako, Carpinteria, Calif.). Endogenous peroxidase activity was
quenched by 0.3% H.sub.2O.sub.2 in water. Slides were incubated
with respective antibodies. Sections were treated with
streptavidin-biotin and DAB (3,3-diaminobenzidine) was used as
chromogen. Hematoxylin was used for counterstaining. The intensity
of the staining was evaluated under light microscopy.
[0194] PCR: Total RNA was isolated using TRIZOL.RTM. reagent (Life
Technologies, Carlsbad, Calif.), following the manufacturer's
instructions. For each analysis, 5 .mu.g of RNA was
reverse-transcribed using the SUPERSCRIPT.RTM. III first strand
synthesis kit (Life Technologies). Quantitative real-time PCR was
performed using SYBR.RTM. Green on an MJ Research OPTICON.RTM. I
instrument. The results were quantified as C.sub.t values, where
C.sub.t is defined as the threshold cycle of PCR at which the
amplified product is first detected and expressed as fold gene
expression (the ratio of target/control).
[0195] Measurement of oxygen consumption rate (OCR) and
extracellular acidification rate (ECAR): 4T1 breast cancer cells or
B16 melanoma cells (2.times.10.sup.4 cells) were plated in the
presence or absence of CD47 morpholino (10 .mu.M). After a 48 hour
period of incubation, cells were treated with doxorubicin for 1
hour (10 .mu.g/ml). OCR and ECAR were measured using an XF24
analyzer (Seahorse Bioscience, N. Billerica, Mass.).
[0196] Cell viability: Wild type or CD47 null Jurkat T cells were
plated at a density of 7.times.10.sup.3/well in 96 well plates or
500 cells/well in 1536 well plates. Cells were treated with
increasing amounts of doxorubicin. Cell viability was measured 48
or 72 hours after treatment by MTS reduction or using
CellTiter-Glo.RTM. cell viability assay (Promega, Madison
Wis.).
Results
[0197] Blockade of CD47 sensitizes breast tumors to anthracycline
chemotherapy: 4T1 B breast cancer cells were implanted in the
mammary fat-pad of Balb/C mice. The mice were treated weekly with
saline, doxorubicin, CD47 M, or the combination of CD47 M with
doxorubicin. Tumor growth was measured using calipers and was
followed for 30 days. Treatment with CD47 morpholino was done two
days prior to each treatment with doxorubicin for four weeks. The
tumors in the saline control mice demonstrated rapid tumor growth
while treatment with doxorubicin or CD47 morpholino alone slightly
delayed tumor growth (FIG. 1A). In contrast, orthotopic tumors
treated with the CD47 morpholino followed by doxorubicin treatment
exhibited dramatically delayed tumor growth relative to doxorubicin
or CD47 morpholino alone (FIG. 1A). These data indicate that
blockade of CD47 enhances doxorubicin therapy to reduce tumor
growth.
[0198] Tumors were excised at the end of the study and weighed.
Tumors of mice treated with saline tripled in size (FIG. 1 B). On
the other hand, even though doxorubicin or CD47 morpholino
treatment caused a reduction in tumor weight, combination of CD47
blockade and doxorubicin further reduced tumor mass by 50% or more
(FIG. 1 B). Thus blockade CD47 enhances the reduction of breast
tumor growth by doxorubicin in a syngeneic tumor model, indicating
that CD47 potentiates anthracycline-mediated breast tumor
therapy.
[0199] Blockade of CD47 in combination with doxorubicin reduces
metastasis: The 4T1 breast cancer model is a well known model for
metastasis of orthotopic breast tumors to lung and other organs.
Mice were injected in the mammary fat pad with 4T1 cells. CD47
morpholino was administered intraperitoneally at a dose of 10 .mu.M
per mouse. Doxorubicin was adminstered intravenously at a dose of
10 mg/kg. The CD47 morpholino was administered weekly and the
Doxorubicin administration was done weekly 48 hours after CD47
treatment. Five mice per group were treated. Lungs were exised,
paraffin embedded, and hematoxylin and eosin stain was used to
determine tissue structure. Mice treated with saline showed
formation of tumors in the lung indicating that cells injected in
the mammary fatpad metastazised to lung (FIG. 12A, left panel). On
the other hand, combination of Dox and CD47 M completely reduced
metastasis to lung (FIG. 12A, right panel). No metastases were
observed in lungs from mice treated with Dox and CD47 M (FIG. 12B).
This indicates that the combination treatment reduces metastasis to
reduce tumor burden.
[0200] Blockade of CD47 regulates oxygen consumption rate and
extracellular acidification rate in 4T1 breast cancer cells. To
start elucidating the molecular mechanism of breast cancer
sensitization to anthracycline therapy with CD47 blockade oxygen
consumption rate (OCR) was tested. OCR is a measurement of
mitochondrial respiration and is extremely sensitive to changes in
metabolic demand (Tao et al., Anal. Biochem. 381:43-52, 2008).
Increased OCR is an indicator of mitochondrial dysfunction in
transformed cells associated with tumor aggressiveness and
resistance to therapy (Vaupel and Mayer, Int. J. Biochem. Cell
Biol. 44:1477-1481, 2012). To measure OCR, 4T1 breast cancer cells
or B16 melanoma cells were plated in 24-well plates using the XF24
flux analyzer (Seahorse Bioscience). Cells were exposed to known
mitochondrial poisons (oligomicin, carbonilcyanide
p-triflouromethoxy-phenylhydrazone FCCP, or actinomycin A) to
determine basal and maximal OCR. Untreated 4T1 cells showed an
increased oxygen consumption rate, which is associated with
mitochondrial dysfunction and cancer resistance. Treatment with
doxorubicin also showed the same pattern in both 4T1 breast cancer
cells and B16 melanoma cells (FIG. 2A and B). On the other hand,
blockade with CD47 alone caused a reduction in OCR, but blockade
with CD47 and doxorubicin significantly reduced the oxygen
consumption rate (FIG. 2A and B). This shows that blockade of CD47
alone and in conjunction with anthracycline treatment decreases OCR
in cancer cells.
[0201] It is well known that cancer cells show increased glycolytic
flux. Cells with elevated glycolysis exhibit increased lactic acid
production and therefore an increased extracellular acidification
rate. Increased glycolysis is a hallmark of tumor aggressiveness,
and targeting tumor acidity is demonstrated to reduce tumor burden.
The extracellular acidification rate (ECAR) was measured in 4T1 B
cells using the XF24 flux analyzer following the same treatments
stated above. As shown in FIG. 2C, control 4T1 B cells showed high
acidification in the media, as did the groups of cells treated with
doxorubicin alone. Blockade with CD47 caused a slight decrease in
the ECAR (FIG. 2C). However, combination with doxorubicin
significantly reduced the acidification rate (FIG. 2C), indicating
that blockade of CD47 reduces the glycolytic flux as measured by
reduction in ECAR to sensitize breast cancer cells to death by
chemotherapy treatment.
[0202] In addition, combination treatment with CD47 M and dox
reduced glucose uptake in vitro. 4T1 B cells were plated and
treated and a group was treated with CD47 M. After 48 hours, one
group of untreated cells and one of the CD47 M treated cells were
treated with Dox. Glucose uptake was measured 24 hours after
treatment by adding 2-NBDG, which is a fluorescently labeled
deoxyglucose analog that is used primarily to directly monitor
glucose uptake by living cells. This confirmed that the combination
treatment modified glucose metabolism to sensitize cells to Dox
treatment (FIG. 10). Furthermore, blockade of CD47 in combination
with dox decreased expression of the Glut-1 glucose transporter in
vivo (FIG. 11). Tumors of mice were exised and protein expression
was determined by western blot hybridization. Expression of Glut-1
was not affected by treatment with saline, doxorubicin or CD47
morpholino (CD47M) alone. However the combination of Dox and CD47 M
reduced Glut-1 transporter expression in vivo. Glut-1 facilitates
the transport of glucose in cells and is a poor prognostic factor
in breast cancer and other cancer types. This indicates that
reduction of Glut-1 could mediate in part the effects on
bioenergetics observed previously and the reduction of tumor growth
observed in the in vivo studies above.
[0203] Blockade of CD47 increases mitophagy gene expression in
vitro and in vivo: As shown in FIGS. 1A and B a profound
sensitization of breast tumor to anthracycline chemotherapy
resulted from CD47 blockade. Autophagy can promote either survival
or death of tissue. Selective mitochondrial turnover by mitophagy
in tumor tissue can shift this pathway to a pro-death response
(Gargini et al., Autophagy 7:466-476, 2011). To further understand
the mechanism of mitophagy in breast cancer cells, 4T1 breast
cancer cells were plated and treated with CD47 morpholino for 48
hours. After incubation, cells were treated with 10 .mu.g/ml of
doxorubicin. After 24 hours incubation, cells were harvested and
RNA was isolated. Gene expression was determined by qRT-PCR. While
control, doxorubicin treatment, and CD47 blockade alone showed
minimal effects, combination treatment with doxorubicin and CD47
morpholino increased PINK and PARKIN 3- to 10-fold respectively
(FIGS. 3A and B). Moreover, increases in both PINK and PARKIN
occurred in vivo in RNA isolated from 4T1 breast cancer tumors
grown in mice receiving the combination treatment (FIGS. 3C and D).
This suggests that blockade of CD47 in combination with doxorubicin
treatment increases both PINK and PARKIN to increase mitochondrial
turnover and that the tumor sensitization observed in this animal
model was associated with an increase in mitophagy.
[0204] Blockade of CD47 protects cardiac tissue from death
associated with anthracycline treatment. One of the most prevalent
side effects of anthracycline therapy is cardiac toxicity. H9c2
cardiac myoblast cells were plated and one group was treated with
CD47 Morpholino. After 48 hours incubation one group of untreated
cells and one of the CD47 M treated cells were administered Dox (10
mg/ml). Lactate dehydrogenase (LDH) release was determined 24 hours
after treatment as a measure of cell cytotoxicity. Treatment with
Dox alone increased LDH release when compared to untreated cells;
however, treatment with CD47M reduced the Dox-induced cardiac cell
cytotoxicity (FIG. 13). This indicates that blockade of CD47
reduces Dox mediated cardiac cell death.
[0205] Hearts were collected from mice at the end of the tumor
studies after four rounds of weekly doxorubicin treatment in the
presence or absence of CD47 blockade. Sections were paraffin
embedded and stained with H&E to determine tissue histology.
Hearts of saline treated animals show no evidence of toxicity (FIG.
4, top panel, left). Hearts of mice treated with doxorubicin showed
the characteristic degeneration of cardiac muscle caused by
doxorubicin treatment (Li et al., Circulation 113:535-543, 2006)
(FIG. 4A, top panel, middle). Blockade of CD47 using the antisense
morpholino prevented this cardiac damage (FIG. 4, top panel,
right).
[0206] Tissue sections were subjected to TUNEL staining to detect
cell death. Hearts of mice treated with saline showed basal cell
death and those of mice treated with doxorubicin showed high TUNEL
positive staining, indicating cell death in cardiac tissue (FIG. 4,
bottom panel, left and middle). However, blockade of CD47 caused a
remarkable protection from death associated with doxorubicin
treatment (FIG. 4, bottom panel, right). This indicates that
blockade of CD47 selectively protects cardiac tissue in a syngeneic
model of breast cancer and prevents anthracycline induced cardiac
toxicity. In addition, lung tissue in the mice treated with CD47
blockade in combination with doxorubicin appeared to be in better
condition than lung tissue in the mice treated with doxorubicin
alone by visual observation. There was less fibrosis in lung tissue
from mice treated with Dox alone as compared to mice treated with
CD47 morpholino in combination with Dox (FIGS. 16A and B). This
suggests that the protective effect of CD47 blockade from
anthracycline cytotoxicity is not limited solely to heart
tissue.
[0207] Blockade of CD47 induces protective autophagy in heart
tissue: WT and CD47 null mice were treated with doxorubicin to
determine effects on autophagy gene expression. Atg5 and Atg7 mRNA
levels were markedly increased in hearts of CD47 null mice treated
with doxorubicin (FIGS. 5A and B). On the other hand a slight
reduction of Atg5 (FIG. 5A) was observed in hearts of WT mice
treated with doxorubicin only, and minor effects on autophagy with
the rest of the treatment groups. This indicates that the
cardioprotection observed with CD47 treatment is associated with an
increase in autophagy gene expression.
[0208] Human CD47-deficient T cells are resistant to anthracycline
associated cell cytotoxicity: In order to determine if the
protection from doxorubicin associated cell death is cell
autonomous, WT and CD47 deficient Jurkat T cells were treated with
increasing concentration of doxorubicin. WT T-cells showed
decreased viability with doxorubicin treatment while CD47 deficient
cells showed a dose-dependent protection from
doxorubicin-associated cytotoxicity (FIG. 6). This indicates that
the protection observed with CD47 blockade also extends to T-cells,
which could indicate that it could protect normal tissue from death
associated to doxorubicin treatment. This also demonstrates that
loss of CD47 in human cells is cytoprotective against doxorubicin
treatment.
[0209] Blockade of CD47 does not protect breast cancer cells from
cytotoxicity associated with anthracycline treatment: 4T1 breast
cancer cells were treated with CD47 morpholino and treated with
increasing concentrations of doxorubicin. Treatment with
doxorubicin caused a reduction in cell viability (FIG. 7A).
Moreover, blockade of CD47 had no effect in the decrease in
viability observed with doxorubicin treatment (FIG. 7A). Blockade
of CD47 also reduced viability of B16 mouse melanoma cells and CT26
mouse colon carcinoma cells treated with doxorubicin (FIGS. 7B and
C). However, blockade of CD47 protected human umbilical vein
endothelial cells from doxorubicin toxicity (FIG. 7D). This
indicates that blockade of CD47 selectively protects normal but not
cancer cells.
[0210] Blockade with CD47 causes differential expression of PINK in
tumor and heart tissue: Tissue sections from the initial tumor
model were immune-stained for PINK. A marked increase in PINK
expression in tumor sections was observed in mice treated with CD47
morpholino in combination with anthracycline when compared to those
of saline or doxorubicin alone (FIG. 8, top panel, right). This
suggests that mitophagy is upregulated in tumor tissue sensitized
to doxorubicin chemotherapy by CD47 blockade. No change in PINK
expression was observed in hearts from the three treatment groups,
(FIG. 8, bottom panel) suggesting a tissue specific regulation of
PINK, and therefore mitophagy, in tumor versus normal heart
tissue.
EXAMPLE 2
Blockade of CD47 Decreases Antimetabolite and Topoisomerase
Inhibitor Cytotoxicity to Non-Tumor Cells
[0211] Wild type or CD47 null Jurkat cells were plated at a density
of 7.times.10.sup.3/well in 96 well plates. Cells were treated with
10 .mu.g/ml 5-FU or 50 mg/ml camptothecin. Cell viability was
measured 72 hours after treatment by MTS reduction.
[0212] Treatment with 5-FU caused 59% cytotoxicity to wild type
Jurkat cells, but only 31% cytotoxicity to CD47 deficient Jurkat
cells (FIG. 9). Moreover, treatment with camptothecin caused 79%
cytotoxicity to wild type
[0213] Jurkat cells and 56% in CD47 deficient Jurkat cells. These
data demonstrate that inhibition of CD47 signaling decreases the
cytotoxicity of these chemotherapy agents in non-tumor cells.
EXAMPLE 3
Blockade of CD47 Decreases Cytotoxicity of Chemotherapeutic
Compounds to Non-Tumor Cells
[0214] This example demonstrates that blockade of CD47 decreases
cytotoxicity of a broad spectrum of chemotherapeutic compounds in
non-tumor cells.
[0215] A panel of 1913 approved and experimental chemotherapeutic
agents were screened for inhibition of viability of non-tumor
cells. Wild-type or CD47 deficient Jurkats cells were plated in
sterile, tissue culture-treated 1536-well white solid-bottom
plates. A total of 500 cells per well were seeded using a Multidrop
Reagent dispenser with a small pin cassette. Compounds were
dispensed at concentrations ranging from 10.sup.-9 to 10.sup.-4 M,
and the plates were covered with stainless steel Kalypsys
microplate lids and placed into an incubator at 37.degree. C., with
5% CO2 and 95% relative humidity. The plates were incubated for 48
hours, and then 3 .mu..mu.L CellTiter-Glo.RTM. assay reagent
(Promega, Madison, Wis.) was added. Relative luminescence units
(RLU) were quantified using a ViewLux.TM. imager (PerkinElmer,
Waltham, Mass.) to determine viability of cells.
[0216] Table 1 shows compounds that exhibited decreased maximal
inhibition of cell survival at 48 hours in CD47 null Jurkat cells
compared to WT Jurkat cells. Table 2 shows compounds that exhibited
decreased potency for inhibiting cell viability (AC50 values) in
CD47 null Jurkat cells compared to WT Jurkat cells. Of the 1913
compounds tested, 411 were active, but showed no significant
differences in AC50 values between WT and CD47 null Jurkat
cells.
TABLE-US-00001 TABLE 1 Compounds with decreased maximal inhibition
of cell survival in CD47 deficient (CD47 KO) Jurkat T cells Maximal
Maximal z-score Response Response .DELTA. Maximal .DELTA. Maximal
CD47 KO WT Response Response Name (RLU) (RLU) CD47KO-WT CD47KO-WT
Silybin 40.999 13.77 27.229 1.369495095 Zosuquidar trihydrochloride
39.638 17.315 22.323 1.070129203 Valspodar 83.876 56.155 27.721
1.399517113 DCC-2036 41.19 3.812 37.378 1.988790741 Cladribine
59.738 21.67 38.068 2.030894791 Daidzin 144.949 115.579 29.37
1.500139688 JK 184 39.212 13.602 25.61 1.27070313 Rolofylline
84.234 61.315 22.919 1.106497338 Dobutamine hydrochloride 40.55
8.698 31.852 1.651592225 Isoprenaline hydrochloride 53.781 7.997
45.784 2.501727898 Eprosartan mesylate 90.261 63.38 26.881
1.348260009 EBPC 122.465 100.134 22.331 1.070617366 Triciribine
120.768 92.368 28.4 1.440949938 MK-2206 30.241 1.791 28.45
1.444000956 AZD-5363 25.014 1.231 23.783 1.15921893 Akt-I-1 72.553
10.094 62.459 3.519242422 Triciribine phosphate 80.607 52.513
28.094 1.422277707 GDC-0068 31.005 2.029 28.976 1.476097666
Masoprocol 31.706 3.946 27.76 1.401896907 Licofelone 32.374 9.166
23.208 1.124132222 MK-886 40.805 13.757 27.048 1.35845041 VE-821
64.063 17.653 46.41 2.539926644 SNS-314 60.794 31.863 28.931
1.47335175 AMG-900 52.081 26.057 26.024 1.29596556 JNJ-7706621
44.022 4.83 39.192 2.099481677 Alisertib 53.002 28.645 24.357
1.194244617 AT-9283 24.648 2.937 21.711 1.032784742 TAK-901 33.892
4.465 29.427 1.503617849 PF-03814735 25.285 2.512 22.773
1.097588365 MK-5108 85 50.854 34.146 1.791572934 ABT-737 29.852
1.054 28.798 1.465236042 TW-37 34.779 13.439 21.34 1.010146188
I-BET762 41.586 9.858 31.728 1.6440257 Aloxistatin 132.797 104.466
28.331 1.436739533 Emricasan 69.759 26.974 42.785 2.318727835 PAC-1
41.834 10.752 31.082 1.604606547 AC-265347 108.022 76.539 31.483
1.629075712 SB262470 NPS-2143 97.874 19.594 78.28 4.484645557
AG-041R 52.368 9.739 42.629 2.309208658 PHA-767491A 50.652 3.817
46.835 2.565860298 Flavopiridol??? 37.554 2.486 35.068 1.847833707
AT-7519 27.655 1.678 25.977 1.293097603 PHA-793887 33.85 1.453
32.397 1.684848322 RGB-286147 39.37 1.775 37.595 2.00203216 BS-194
43.598 1.928 41.67 2.250690132 R-547 36.61 3.1 33.51 1.752763984
Dinaciclib 47.924 3.92 44.004 2.393111655 Milciclib 34.643 3.772
30.871 1.591731251 SNS-032 34.22 0.946 33.274 1.738363179 PTC-124
109.291 77.858 31.433 1.626024694 Lumacaftor 34.976 4.41 30.566
1.57312004 AZD-7762 39.585 9.778 29.807 1.526805586 AM-630 36.125
12.87 23.255 1.127000179 Tolcapone 72.927 36.753 36.174 1.915322226
KI-20227 42.569 12.143 30.426 1.56457719 CAA0225 41.833 13.449
28.384 1.439973612 Methyltestosterone 45.934 19.391 26.543
1.327635127 Exemestane 77.388 48.822 28.566 1.451079318 Baicalein
91.667 63.506 28.161 1.426366072 Methyldopa 66.092 2.736 63.356
3.573977686 Methotrexate 54.169 9.002 45.167 2.464078335
Vidofludimus 64.725 19.287 45.438 2.480614853 NSC-48006 46.143
20.924 25.219 1.246844169 Gimeracil 106.453 83.034 23.419
1.137007519 Fenoldopam 93.129 61.271 31.858 1.651958347 AG-1024
55.705 21.585 34.12 1.789986404 Sapitinib 42.354 14.043 28.311
1.435519126 Mubritinib 45.69 17.243 28.447 1.443817895 Estriol
120.332 72.648 47.684 2.617666584 YK-4-279 38.318 14.615 23.703
1.154337301 Cerulenin 39.947 10.602 29.345 1.498614179 SG-00529
39.325 14.623 24.702 1.215296642 Orantinib 36.73 6.657 30.073
1.543037002 Tivozanib 30.389 8.955 21.434 1.015882102 Vargatef
50.125 12.253 37.872 2.0189348 Lenvatinib 51.428 5.012 46.416
2.540292766 Motesanib 68.692 21.286 47.406 2.600702924 JNJ-38158471
64.339 28.354 35.985 1.903789378 HMSL10084 24.556 2.486 22.07
1.054691051 Osthol 60.073 35.688 24.385 1.195953188
Dihydromyricetin 36.707 15.036 21.671 1.030343927 Spermidine 82.208
20.847 61.361 3.452242065 TWS-119 41.471 15.256 26.215 1.307620449
Ezatiostat 113.889 68.407 45.482 2.483299749 ICI-D7288 27.963 5.518
22.445 1.077573687 SB-408124 50.614 23.067 27.547 1.38889957
PCI-34051 74.801 33.723 41.078 2.214566078 2-Methoxyestradiol
45.435 21.899 23.536 1.144146901 IOX2 113.814 89.375 24.439
1.199248287 Atorvastatin calcium 57.007 34.989 22.018 1.051517992
Mizolastine 89.324 60.168 29.156 1.487081331 Ac-SAH-p53-8 37.723
11.534 26.189 1.306033919 Fluvoxamine maleate 34.845 0.209 34.636
1.821472911 Rizatriptan benzoate 83.76 62.211 21.549 1.022899443
Amoxapine 60.648 28.037 32.611 1.697906679 Ziprasidone
hydrochloride 42.21 17.586 24.624 1.210537054 Picropodophyllin
37.377 12.497 24.88 1.226158266 BMS-754807 82.867 47.422 35.445
1.870838383 BMS-345541 23.272 1.923 21.349 1.010695371 PS-1145
97.256 67.733 29.523 1.509475804 PF-184 51.177 15.645 35.532
1.876147154 Mycophenolic acid 58.678 19.34 39.338 2.108390649
Ribavirin 113.259 82.278 30.981 1.59844349 Mycophenolate mofetil
71.329 19.156 52.173 2.891586986 NCGC00241410-01 41.906 11.766
30.14 1.547125367 Merck 5 71.573 49.62 21.953 1.047551669
Tyrphostin B42 67.867 35.116 32.751 1.70644953 NCGC00183808-01
74.518 35.566 38.952 2.08483679 NCGC00241036-01 73.954 46.14 27.814
1.405192006 Sophocarpine 83.612 40.909 42.703 2.313724165
Flupirtine maleate 69.164 44.09 25.074 1.237996216 Monastrol 69.287
32.433 36.854 1.956816072 S-Trityl-L-cysteine 80.305 33.811 46.494
2.545052354 SU-6656 72.735 39.636 33.099 1.727684615 Phenelzine
51.795 13.556 38.239 2.041329272 Hydroxychloroquine sulfate 112.507
88.656 23.851 1.163368315 PD-184352 42.673 14.102 28.571 1.45138442
XMD8-92 39.731 15.283 24.448 1.19979747 HMSL10058 49.422 14.124
35.298 1.86186839 HLI-373989 27.558 1.53 26.028 1.296209641
Nutlin-3 49.966 7.821 42.145 2.279674803 EMD-1214063 39.443 4.948
34.495 1.81286904 AMG-1 40.721 12.765 27.956 1.413856898 Tivantinib
35.424 9.411 26.013 1.295294336 NVP-BVU-972 80.831 49.524 31.307
1.618336128 Doxycycline 47.095 19.309 27.786 1.403483436 PD-166793
46.846 10.39 36.456 1.932529968 Eltrombopagolamine 33.444 9.025
24.419 1.19802788 Pravadoline 110.289 83.446 26.843 1.345941236
WYE-354 31.102 2.442 28.66 1.456815232 Ridaforolimus 33.391 8.791
24.6 1.209072565 Carbidopa 43.994 12.731 31.263 1.615651232
Chlorambucil 92.524 16.98 75.544 4.317693849 Ganciclovir 69.097
6.562 62.535 3.523879969 Hydrochlorothiazide 42.166 15.923 26.243
1.309329019 Levodopa 77.71 43.316 34.394 1.806705983 Bufexamac
80.782 34.171 46.611 2.552191737 Methacycline hydrochloride 46.269
18.154 28.115 1.423559135 Amoxicillin sodium 61.467 27.97 33.497
1.751970719 Antimycin A 46.04 24.41 21.63 1.027842092 Fluocinolone
acetonide 57.23 25.744 31.486 1.629258773 Triamcinolone acetonide
99.996 71.308 28.688 1.458523802 Emetine 33.945 5.168 28.777
1.463954614 Aspartame 127.356 103.971 23.385 1.134932826
Neohesperidin 31.011 9.336 21.675 1.030588009 dihydrochalcone
Oxytetracycline 71.104 40.887 30.217 1.551823934 Chlormethine
77.133 42.804 34.329 1.80273966 Prostaglandin E2 68.744 41.698
27.046 1.358328369 Cytarabine 50.088 6.781 43.307 2.350580463
Cyclosporine A 34.992 13.202 21.79 1.03760535 ThioTEPA 81.874
23.813 58.061 3.250874873 Terbinafine hydrochloride 58.754 36.243
22.511 1.081601031 Rabeprazole 115.444 92.342 23.102 1.117664064
16,16-dimethyl PGE2 73.807 31.844 41.963 2.268569098 Elactocin
30.361 6.663 23.698 1.154032199 Niguldipine 133.155 102.048 31.107
1.606132056 Mitomycin 25.245 1.358 23.887 1.165565048 Echinomycin
55.044 8.075 46.969 2.574037026 Malotilate 81.666 32.716 48.95
2.694918362 Adapalene 48.053 20.674 27.379 1.378648149 Argatroban
92.128 64.584 27.544 1.388716509 Oxaliplatin 109.492 49.399 60.093
3.374868247 Limonin 137.297 106.306 30.991 1.599053694 Valaciclovir
73.063 45.639 27.424 1.381394065 Prednisolone 71.927 43.795 28.132
1.424596481 Idoxuridine 101.516 79.933 21.583 1.024974135
Fludarabine phosphate 46.884 12.348 34.536 1.815370875 Minocycline
52.108 7.169 44.939 2.450165693 Estramustine 135.618 105.466 30.152
1.547857611 Ibandronate sodium hydrate 127.096 103.48 23.616
1.14902853 Carboplatin 152.695 118.461 34.234 1.796942725
Nateglinide 111.519 76.528 34.991 1.843135139 Danoprevir 101.689
75.521 26.168 1.304752492 Bleomycin sulfate 76.042 18.436 57.606
3.223110609 Elvitegravir 44.755 12.72 32.035 1.662758951 Asiatic
acid 87.171 61.399 25.772 1.280588429 Baicalin 78.198 52.935 25.263
1.249529065 Puerarin 110.056 12.378 97.678 5.668318525
10-Deacetylbaccatin 76.768 39.362 37.406 1.990499311 Entecavir
63.062 7.89 55.172 3.074587049 Cyclocytidine HCl 59.998 9.572
50.426 2.784984415 UK-383367 49.091 13.282 35.809 1.893049794
Picoplatin 53.529 11.955 41.574 2.244832177 AGI-5198 45.976 24.153
21.823 1.039619022 Bioymifi 48.515 10.488 38.027 2.028392956
NSC319726 47.192 9.878 37.314 1.984885438 Moxonidine hydrochloride
66.695 34.088 32.607 1.697662598 hydrate Rilmenidine 87.857 56.878
30.979 1.59832145 SR9011 30.529 7.859 22.67 1.091303268 Ro 51
35.756 4.309 31.447 1.626878979 GW-791343 37.839 3.378 34.461
1.810794347 AZ 11645373 35.262 3.025 32.237 1.675085064 INO-1001
130.285 106.954 23.331 1.131637727 Olaparib 90.538 63.542 26.996
1.355277351 Niraparib 81.286 48.69 32.596 1.696991374 Lirimilast
87.201 61.864 25.337 1.254044571 ASR-isobudimer-SO.sub.2Ph-4-
50.082 27.802 22.28 1.067505327 CH.sub.2OC(O)NMe.sub.2 BTM-2C-dimer
ketone 61.349 28.3 33.049 1.724633597 Mifepristone 38.548 7.203
31.345 1.620654902 IC-87114 35.263 4.013 31.25 1.614857968 GNE-493
47.021 18.068 28.953 1.474694198 PIK-293 50.9 15.445 35.455
1.871448587 CH-5132799 32.385 10.205 22.18 1.061403291 GSK-2636771
51.53 26.827 24.703 1.215357662 TGX-221 40.352 17.942 22.41
1.075437974 CAL-101 32.28 9.332 22.948 1.108266928 Oleanolic acid
56.286 26.521 29.765 1.524242731 IVX-214 32.053 8.077 23.976
1.17099586 Triptolide 65.405 5.613 59.792 3.356501118 GW-7647
50.573 4.907 45.666 2.494527495 Ciprofibrate 94.451 12.532 81.919
4.706698652 GW-6471 36.938 6.324 30.614 1.576049018 GW-501516
97.955 75.948 22.007 1.050846769 SR1664 67.276 25.029 42.247
2.28589888 A-769662 125.676 69.086 56.59 3.161113922 Enzastaurin
40.303 13.534 26.769 1.341425729 Actinomycin D 42.128 2.014 40.114
2.15574245 Rifapentine 52.75 2.402 50.348 2.780224827 AP-768
130.711 99.963 30.748 1.584225746 Piroxicam 106.754 80.791 25.963
1.292243318 Acemetacin 130.505 103.666 26.839 1.345697154
Nimesulide 82.485 17.364 65.121 3.681678623 PF-431396 40.108 5.036
35.072 1.848077788 Parietin 123.156 97.435 25.721 1.27747639
Pluripotin 85.4 58.958 26.442 1.321472071 Glycyl-H-1152 99.473
62.229 37.244 1.980614013 Hydroxyurea 47.712 5.365 42.347
2.292000916 Gemcitabine 43.326 10.147 33.179 1.732566244 HPI-1
60.299 26.899 33.4 1.746051744 ABC-294640 32.778 8.808 23.97
1.170629738 PD-173955 35.348 8.871 26.477 1.323607783
Cryptotanshinone 31.687 5.548 26.139 1.302982901 BIBR 1532 45.071
23.105 21.966 1.048344934 Imiquimod 72.849 50.894 21.955 1.04767371
Tanshinone I 62.314 23.03 39.284 2.10509555 Topotecan hydrochloride
30.703 8.516 22.187 1.061830434 Camptothecin 37.178 9.64 27.538
1.388350387 10-hydroxy-camptothecin 33.266 9.333 23.933
1.168371984
Irinotecan 40.251 15.402 24.849 1.224266635 Rebeccamycin 41.489
12.004 29.485 1.50715703 Doxorubicin 61.232 5.625 55.607
3.101130906 Pirarubicin 26.932 4.326 22.606 1.087397965 Etoposide
69.938 10.441 59.497 3.338500112 Dexrazoxane hydrochloride 114.137
70.455 43.682 2.373463099 Epirubicin hydrochloride 49.805 4.322
45.483 2.483360769 Propylthiouracil 111.151 82.824 28.327
1.436495452 Ansamitocin P3 32.337 5.732 26.605 1.33141839 Noscapine
38.52 10.875 27.645 1.394879565 Paclitaxel 55.703 19.451 36.252
1.920081814 Colchicine 45.702 9.264 36.438 1.931431602 Indibulin
48.851 21.582 27.269 1.371935909 4-Demethylepipodophyllotoxin
78.185 17.735 60.45 3.396652516 Vincristine sulfate 37.863 9.981
27.882 1.409341391 Demecolcine 39.703 14.285 25.418 1.258987221
Epothilone B 49.832 27.108 22.724 1.094598368 Docetaxel 57.66
24.806 32.854 1.712734627 Combretastatin A-4 36.125 12.882 23.243
1.126267935 E-7010 44.092 10.419 33.673 1.762710303 Epothilone A
52.727 26.393 26.334 1.314881872 Lexibulin hydrochloride 46.894
13.896 32.998 1.721521559 Cephalomannine 45.625 22.158 23.467
1.139936496 Ombrabulin 38.265 9.585 28.68 1.458035639 RO495 38.025
13.348 24.677 1.213771133 Trifluridine 57.881 10.459 47.422
2.60167925 Raltitrexed 59.656 22.166 37.49 1.995625022 Vatalanib
60.983 14.015 46.968 2.573976006 Warfarin sodium 121.897 100.275
21.622 1.027353929 MK-1775 36.376 14.928 21.448 1.016736387
Bendamustine 122.856 25.146 97.71 5.670271176
TABLE-US-00002 TABLE 2 Compounds with decreased potency for
inhibiting cell viability in CD47KO Jurkat T cells AC50 (.mu.M)
AC50 (.mu.M) .DELTA. LogAC50 Name CD47 KO WT CD47KO-WT Cladribine
1.049 0.1482 0.85 AZD-5363 7.4266 0.1663 1.65 Akt-I-1 16.6261
2.3485 0.85 Navitoclax 5.8992 0.2348 1.4 ABT-737 14.818 1.8655 0.9
Obatoclax 1.4818 0.3722 0.6 I-BET151 20.931 5.8992 0.55 Purvalanol
B 52.5764 14.818 0.55 GSK-923295 4.6859 0.2635 1.25 CHIR-124 1.4818
0.1177 1.1 SCH-900776 1.4818 0.3722 0.6 AEE-788 20.931 1.8655 1.05
WZ-3146 13.2066 4.1763 0.5 XL-647 11.7704 3.7221 0.5 AST-1306 1.049
0.2635 0.6 YK-4-279 0.935 0.1663 0.75 Orantinib 16.6261 1.4818 1.05
Vargatef 14.818 3.3173 0.65 Lenvatinib 16.6261 2.6351 0.8
Trichostatin A 0.6619 0.2093 0.5 Entinostat 2.6351 0.8333 0.5 AR-42
0.935 0.2957 0.5 Mocetinostat 2.6351 0.5899 0.65 M344 0.5258 0.1663
0.5 2-Methoxyestradiol 6.619 0.4686 1.15 6-mercaptopurine 1.6626
0.5258 0.5 Alvespimycin 0.6619 0.1663 0.6 hydrochloride AVN-944
8.3328 0.3722 1.35 NCGC00344999-01 2.6351 0.1321 1.3 AZ-960 14.818
0.8333 1.25 Ispinesib 58.9917 0.0019 4.5 VU0482089-2 5.8992 1.8655
0.5 INK-128 4.1763 0.3317 1.1 Fenbendazole 2.0931 0.5899 0.55
Ciclopirox 14.818 1.049 1.15 Oxibendazole 0.5899 0.0053 2.05
Melphalan 23.485 1.4818 1.2 Methylrosaniline 1.3207 0.2348 0.75
chloride Halofantrine 16.6261 0.4686 1.55 Cinchonidine 20.931
3.3173 0.8 Entecavir 4.6859 0.3317 1.15 Cyclocytidine HCl 1.177
0.2348 0.7 Oridonin 7.4266 2.3485 0.5 RO-4929097 18.6548 1.8655 1
Crenolanib 14.818 2.6351 0.75 Artesunate (AS) 14.818 2.3485 0.8
CAY10626 6.619 1.049 0.8 3-Methyladenine 0.5899 0.1321 0.65
NVP-BGT226 0.5258 0.0662 0.9 Volasertib 0.3317 0.0662 0.7 IVX-214
1.4818 0.4686 0.5 Resistomycin 4.6859 1.177 0.6 Gemcitabine 0.1865
0.0526 0.55 NVP-LDE-225 18.6548 3.7221 0.7 PD-166285 4.6859 0.5899
0.9 AIM-100 16.6261 4.1763 0.6 Topotecan 2.0931 0.0418 1.7
hydrochloride Camptothecin 0.1865 0.0094 1.3 10-hydroxy- 0.3317
0.0209 1.2 camptothecin SN-38 0.2957 0.0037 1.9 Irinotecan 1.8655
0.3317 0.75 Rebeccamycin 0.7427 0.1482 0.7 Mitoxantrone 1.8655
0.1663 1.05 Idarubicin 0.6619 0.1482 0.65 hydrochloride Pirarubicin
13.2066 1.4818 0.95 Epirubicin 1.049 0.2635 0.6 hydrochloride
Vosaroxin 12.8702 1.1471 1.05 Teniposide 4.1763 0.1663 1.4 APR-246
16.6261 1.4818 1.05 Vinorelbine 0.0209 0.0066 0.5 Plinabulin 2.148
0.1914 1.05 Bayer-18 16.6261 2.6351 0.8
[0217] Deficiency of CD47 protected cells from increasing
concentrations of anthracycline family members, including
mitoxantrone, idarubicin, pirarubicin, and epirubicin (FIG. 14A-D)
and the quinolone vosaroxin (FIG. 14E), which targets
topoisomerase-II, as do other anthracyclines. This study also
confirmed the protective effect of CD47 blockade for doxorubicin
cytotoxicity in non-tumor cells (FIG. 14F). Cells deficient in CD47
were also protected from cytotoxicity of topoisomerase-I inhibitors
of the camptothecin family, including topotecan, camptothecin,
10-hydroxycamptothecin, SN-38, irinotecan, and rebeccamycin (FIG.
15A-F).
[0218] In addition to CD47-dependent sensitivity to the pyrimidine
synthesis inhibitor 5-fluororouracil (Example 2), CD47-deficient
Jurkat T cells exhibited significantly decreased maximal inhibition
of viability when treated with the nucleotide biosynthesis
inhibitors cladribine, fludarabine, cytarabine, and gemcitabine
(Table 1). A significant decrease in inhibitory potency as assessed
by the calculated 50% inhibitory dose (AC50) was also observed for
cladribine, 6-mercaptopurine, and gemcitabine (Table 2). This
activity also extended to additional metabolic DNA synthesis
inhibitors including entecavir and rifapentine (Tables 1 and 2).
Furthermore, CD47-expressing and deficient Jurkat T cells exhibited
differing sensitivities to the vinca alkaloid analog vinorelbine,
nitrogen mustards that alkylate and cross link DNA including
chlorambucil and bendamustine, the DNA alkylating agent ThioTEPA,
the platinum compound oxaliplatin that cross links purine bases in
DNA, and the well-characterized DNA strand break-inducing drug
bleomycin sulfate (Tables 1 and 2). Therefore, therapeutic
suppression of CD47 confers protection of nonmalignant cells
against a wide range of DNA damaging chemotherapeutic drugs. The
selectivity of cytoprotection by CD47 blockade is indicated by the
large number of drugs tested in this screen that exhibited no
significant differences in cytotoxicity for wild type versus
CD47-deficient Jurkat T cells. Some classes of targeted
therapeutics, such as mTOR inhibitors, generally showed
significantly increased potency in cells lacking CD47, indicating
that combining CD47 blockade with at least some members of this
class of therapeutics may not be beneficial.
[0219] In view of the many possible embodiments to which the
principles of the disclosure may be applied, it should be
recognized that the illustrated embodiments are only examples and
should not be taken as limiting the scope of the invention. Rather,
the scope of the invention is defined by the following claims. We
therefore claim as our invention all that comes within the scope
and spirit of these claims.
Sequence CWU 1
1
3111PRTArtificial SequenceThrombospondin 1-derived CD47 binding
peptide 1Phe Ile Arg Val Val Met Tyr Glu Gly Lys Lys1 5
1028PRTArtificial SequenceCD47 binding peptide 2Arg Phe Tyr Val Val
Met Trp Lys1 5325DNAArtificial SequenceCD47 antisense morpholino
oligonucleotide 3cgtcacaggc aggacccact gccca 25
* * * * *