U.S. patent application number 17/666018 was filed with the patent office on 2022-05-26 for humanized anti-dkk2 antibody and uses thereof.
The applicant listed for this patent is YALE UNIVERSITY. Invention is credited to Bo CHEN, Dianqing WU, Hai WU.
Application Number | 20220162294 17/666018 |
Document ID | / |
Family ID | 1000006128683 |
Filed Date | 2022-05-26 |
United States Patent
Application |
20220162294 |
Kind Code |
A1 |
WU; Dianqing ; et
al. |
May 26, 2022 |
Humanized anti-DKK2 antibody and uses thereof
Abstract
The present invention relates to the discovery that inhibition
of Dickkopf2 (DKK2) increases CD8.sup.+ cytotoxic T lymphocyte
(CTL) activity, attenuates tumor, and hence suppresses tumor
formation. Thus, in various embodiments described herein, the
methods of the invention relate to methods of treating cancer by
administering to a patient an effective amount of a humanized
anti-DKK2 antibody, methods for providing anti-tumor immunity in a
subject, methods of stimulating a T cell mediated immune response
to a cell population or a tissue and suppressing tumor in a
subject. Additionally, the current invention includes methods of
diagnosing a cancer or a predisposition of developing a cancer or a
metastasis and methods for determining the use of immunotherapy
treatment or cancer vaccine for treating cancer. Furthermore, the
invention encompasses a pharmaceutical composition for treating
cancer as well as a kit for carrying out the aforementioned
methods.
Inventors: |
WU; Dianqing; (Cheshire,
CT) ; CHEN; Bo; (Daly City, CA) ; WU; Hai;
(Palo Alto, CA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
YALE UNIVERSITY |
New Haven |
CT |
US |
|
|
Family ID: |
1000006128683 |
Appl. No.: |
17/666018 |
Filed: |
February 7, 2022 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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15771965 |
Apr 27, 2018 |
11267875 |
|
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PCT/US2016/057814 |
Oct 20, 2016 |
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17666018 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C07K 16/18 20130101;
A61K 39/39558 20130101; A61P 35/00 20180101; C07K 16/2818 20130101;
C07K 2317/24 20130101; C12Q 2600/106 20130101; C07K 2317/34
20130101; C12Q 2600/156 20130101; A61K 2039/507 20130101; C12Q
1/6886 20130101; G01N 2800/52 20130101; G01N 33/68 20130101; A61K
39/001102 20180801; A61K 2039/505 20130101; G01N 33/574 20130101;
C07K 2317/76 20130101; A61P 35/04 20180101 |
International
Class: |
C07K 16/18 20060101
C07K016/18; C12Q 1/6886 20060101 C12Q001/6886; C07K 16/28 20060101
C07K016/28; G01N 33/68 20060101 G01N033/68; G01N 33/574 20060101
G01N033/574; A61K 39/395 20060101 A61K039/395; A61K 39/00 20060101
A61K039/00; A61P 35/04 20060101 A61P035/04; A61P 35/00 20060101
A61P035/00 |
Goverment Interests
STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH OR DEVELOPMENT
[0002] This invention was made with government support under grant
GM112182 awarded by National Institute of Health. The government
has certain rights in the invention.
Claims
1. A method of treating a cancer in a subject in need thereof, the
method comprising administering to the subject an effective amount
of a humanized anti-Dickkopf2 (anti-DKK2) antibody or fragment
thereof in a pharmaceutical acceptable carrier.
2. The method of claim 1, wherein the cancer comprises a tumor
comprising cells that express an adenomatosis polyposis coli (APC)
mutation.
3. The method of claim 1, wherein the humanized anti-DKK2 antibody
possesses neutralizing activity.
4. The method of claim 1, wherein the humanized anti-DKK2 antibody
targets a DDK2 neutralizing epitope comprising the amino acid
sequence SEQ ID NO: 5.
5. The method of claim 1, wherein the humanized anti-DKK2 antibody
comprises at least one of the amino acid sequences selected from
the group consisting of SEQ ID NOs: 1, 2 and 3.
6. The method of claim 1, wherein the cancer is selected from the
group consisting of colorectal cancer, pancreatic cancer, gastric
cancer, intestinal cancer, pancreatic cancer, and esophageal
cancer.
7. The method of claim 1, wherein the cancer is metastatic.
8. The method of claim 1, further comprising administering to the
subject an additional agent selected from the group consisting of a
chemotherapeutic agent, an anti-cell proliferation agent, an
immunotherapeutic agent and any combination thereof.
9. The method of claim 8, wherein the additional agent is a
programmed cell death 1 (PD-1) antibody.
10. The method of claim 8, wherein the humanized anti-DKK2 antibody
and the additional agent are co-administered to the subject.
11. The method of claim 8, wherein the humanized anti-DKK2 antibody
and the additional agent are co-formulated and are co-administered
to the subject.
12. The method of claim 1, wherein the route of administration is
selected from the group consisting of inhalation, oral, rectal,
vaginal, parenteral, topical, transdermal, pulmonary, intranasal,
buccal, ophthalmic, intrathecal, and any combination thereof.
13. A pharmaceutical composition for treating a cancer in a
subject, the pharmaceutical composition comprising a humanized
anti-Dickkopf2 (anti-DKK2) antibody or fragment thereof and a
pharmaceutical acceptable carrier.
14. The pharmaceutical composition of claim 13, wherein the cancer
comprises a tumor comprising cells that express an adenomatosis
polyposis coli (APC) mutation.
15. The pharmaceutical composition of claim 13, wherein the
humanized anti-DKK2 antibody possesses neutralizing activity.
16. The pharmaceutical composition of claim 13, wherein the
humanized anti-DKK2 antibody targets a DKK2 neutralizing epitope
that comprises the amino acid sequence SEQ ID NO: 5.
17. The pharmaceutical composition of claim 13, wherein the
humanized anti-DKK2 antibody comprises at least one of the amino
acid sequences selected from the group consisting of SEQ ID NOs: 1,
2 and 3.
18. The pharmaceutical composition of claim 13, comprising an
additional agent selected from the group consisting of a
chemotherapeutic agent, an anti-cell proliferation agent, an
immunotherapeutic agent and any combination thereof.
19. The pharmaceutical composition of claim 13, wherein the
additional agent is a programmed cell death 1 (PD-1) antibody.
20. The pharmaceutical composition of claim 13, wherein the cancer
is selected from the group consisting of colorectal cancer,
pancreatic cancer, gastric cancer, intestinal cancer, pancreatic
cancer, and esophageal cancer.
21. The pharmaceutical composition of claim 13, wherein the cancer
is metastatic.
22. A method for providing anti-tumor immunity in a subject, the
method comprising administering to the subject an effective amount
of a humanized anti-Dickkopf2 (anti-DKK2) antibody or fragment
thereof with a pharmaceutical acceptable carrier.
23. The method of claim 22, further comprising further
administering to the subject an additional agent selected from the
group consisting of a chemotherapeutic agent, an anti-cell
proliferation agent, an immunotherapeutic agent and any combination
thereof.
24. The method of claim 23, wherein the additional agent is a
programmed cell death 1 (PD-1) antibody.
25. The method of claim 23, wherein the humanized anti-DKK2
antibody and the additional agent are co-administered to the
subject.
26. A method for stimulating a T cell-mediated immune response to a
cell population or tissue in a subject, the method comprising
administering to the subject an effective amount of a humanized
anti-Dickkopf2 (anti-DKK2) antibody or fragment thereof with a
pharmaceutical acceptable carrier.
27. The method of claim 26, wherein the humanized anti-DKK2
antibody targets a DDK2 neutralizing epitope comprising the amino
acid sequence SEQ ID NO: 5.
28. The method of claim 26, wherein the humanized anti-DKK2
antibody comprises at least one of the amino acid sequences of SEQ
ID NOs: 1, 2 and 3.
29. The method of claim 26, wherein the T cell-mediated immune
response is a CD8.sup.+ cytotoxic T lymphocyte (CTL) response.
30. A method of diagnosing a cancer or a predisposition for
developing a cancer in a subject, the method comprising determining
the expression level of a DKK2 gene in a biological sample from the
subject, wherein an increase in the expression level of DKK2 in the
biological sample from the subject as compared with the level of
DKK2 expression in a control biological sample from a subject not
having a cancer is an indication that the subject has a cancer or a
predisposition for developing a cancer, and wherein when a cancer
or a predisposition for developing a cancer is detected in a
subject, a humanized anti-DKK2 antibody treatment is recommended
for the subject.
31. The method of claim 30, wherein the cancer is selected from the
group consisting of colorectal cancer, pancreatic cancer, gastric
cancer, intestinal cancer, pancreatic cancer, and esophageal
cancer.
32. The method of claim 30, wherein the expression level of DKK2 in
the biological sample from the subject is at least 10% greater than
the normal control level.
33. The method of claim 30, wherein the expression level of DKK2 in
the biological sample from the subject or normal control is
determined using a method selected from the group consisting of
detecting mRNA of the gene, detecting a protein encoded by the
gene, and detecting a biological activity of the protein encoded by
the gene.
34. A method for determining the efficacy of a humanized anti-DKK2
antibody treatment for cancer in a subject in need thereof, the
method comprising determining the expression level of Dickkopf2
(DKK2) gene in a biological sample from the subject, wherein an
increase in the expression level of DKK2 in the biological sample
from the subject as compared with the level of DKK2 expression in a
control biological sample from a subject not having a cancer is an
indication that the humanized anti-DKK2 antibody treatment is
effective, and wherein when the humanized anti-DKK2 antibody
treatment is determined to be effective, an additional treatment is
recommended for the subject.
35. The method of claim 34, wherein the additional treatment
comprises at least one selected from the group consisting of
chemotherapy, radiation therapy, immunotherapy and cancer vaccine
therapy.
36. The method of claim 34, wherein the expression level of DKK2 in
the biological sample from the subject is at least 10% greater than
the normal control level.
37. The method of claim 34, wherein the expression level is
determined by a method selected from the group consisting of
detecting mRNA of the gene, detecting a protein encoded by the
gene, and detecting a biological activity of the protein encoded by
the gene.
38. The method of claim 34, wherein the cancer is selected from the
group consisting of colorectal cancer, pancreatic cancer, gastric
cancer, intestinal cancer, pancreatic cancer, and esophageal
cancer.
39. The method of claim 1, wherein the subject is a human.
40. (canceled)
41. A composition comprising a humanized anti-Dickkopf2 (anti-DKK2)
antibody targeting a DKK2 epitope comprising the amino acid
sequence SEQ ID NO: 5.
42. A kit for diagnosing a cancer or a predisposition for
developing a cancer or a metastasis in a subject, the kit
comprising a humanized anti-DKK2 antibody targeting a DKK2 epitope
comprising the amino acid sequence SEQ ID NO: 5.
43. The kit of claim 42, wherein the cancer is selected from the
group consisting of colorectal cancer, pancreatic cancer, gastric
cancer, intestinal cancer, pancreatic cancer, and esophageal
cancer.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This present application is a 35 U.S.C. .sctn. 371 national
phase application from, and claims priority to, International
Application No. PCT/US2016/057814, filed Oct. 20, 2016, and
published under PCT Article 21(2) in English, which claims priority
under 35 U.S.C. .sctn. 119(e) to U.S. Provisional Application No.
62/247,410, filed Oct. 28, 2015, all of which are incorporated
herein by reference in their entireties.
BACKGROUND OF THE INVENTION
[0003] Cancer is a major health problem worldwide. Each year, tens
of millions of people are diagnosed with cancer around the world,
and more than half of the patients eventually die from it. About
one-half of all men and one-third of all women in the US will be
diagnosed with a cancer at some point during their lifetime, and
one in four deaths is caused by cancer (Jemal et al., CA Cancer J.
Clin., 2002, 52:23-47; Howlader et al., SEER Cancer Statistics
Review, 1975-2010, National Cancer Institute). The most-commonly
identified human cancers include those that arise from organs and
solid tissues, e.g., colon cancer, lung cancer, breast cancer,
stomach cancer, prostate cancer, and endometrial cancer. Colon
cancer affects 1 in 20 people in the western hemispheres
(Henderson, Nature Cell Biology, 2000, 2(9): p. 653-60). Globally,
every year 1 million new patients are diagnosed with colon cancer
and half of them succumb to this disease (Liu et al., Cell, 2002,
108(6): p. 837-47).
[0004] In the past decades remarkable advancements in cancer
treatment and diagnosis have occurred. Treatment options for cancer
includes surgery, chemotherapy, radiation therapy, and
immunotherapy. Most recently immunotherapy treatment, aiming on
stimulating the immune system, has particularly attracted lots of
investigations. Although immunotherapy could be highly efficacious,
only subsets of patients regardless of the organ of origin of the
tumor are usually responsive to therapy. New findings in this field
are clearly needed for improving immunotherapy efficacy and
specificity.
[0005] Wnt-signaling controls a wide variety of cell processes,
including cell fate determination, differentiation, polarity,
proliferation and migration. The Wnt family of secreted proteins
bind to several classes of receptors, such as the low-density
lipoprotein receptor related (LRP) proteins 5 and -6 (LRP5/6),
resulting in activation of several different intracellular
signaling cascades, including the Wnt/.beta.-catenin, Wnt/calcium
and Wnt/Jnk pathways. Binding of Wnts to LRP5/6 specifically
activates the Wnt/.beta.-catenin pathway by blocking the function
of a multiprotein complex that primes .beta.-catenin for
degradation, resulting in accumulation of .beta.-catenin in the
cytoplasm and nucleus. Nuclear .beta.-catenin complexes with
members of the Lef/TCF family of transcription factors and
activates gene expression.
[0006] Pathological states that may arise from altered stem cell
function, such as degenerative diseases and cancer, are frequently
associated with changes in Wnt/.beta.-catenin pathway activity.
Indeed, hyperactivation of the Wnt/.beta.-catenin pathway is
thought to induce premature senescence of stem cells and
age-related loss of stem cell function (Brack et al., Science,
2007, Vol. 317 no. 5839 pp. 807-810; Liu et al., Science, 2007,
Vol. 317 no. 5839 pp. 803-806). In cancer, hyperactivation of the
Wnt/.beta.-catenin pathway, often in conjunction with mutations in
other cell growth regulatory genes, can lead to aberrant cell
growth (Reya and Clevers, Nature, 2005, 434(7035):843-50). Thus,
many ongoing investigations are focusing on Wnt/.beta.-catenin
pathway as a potential therapeutic target in cancer (Breuhahn et
al., Oncogene, 2006, 25: 3787-3800; Greten et al., Br J Cancer,
2009, 100: 19-23). Particularly, several research studies including
cancer genomic sequencing projects revealed that more than 80% of
colon cancers harbor a mutation or even a loss of the adenomatosis
polyposis coli (APC) gene, a major suppressor of the
Wnt/.beta.-catenin pathway (Kinzler and Vogelstein, Cell. 1996,
October 18; 87(2):159-70. Review; Sjoblom et al., Science, 2006,
October 13; 314(5797):268-74; Mann et al., Proc Natl Acad Sci USA,
1999. 96(4): p. 1603-8). APC and proteins such as GSK3.beta. and
Axin form a complex which marks .beta.-catenin for degradation.
Mutations in APC disrupt this complex and leads to increased levels
of cytoplasmic .beta.-catenin and its nuclear translocation. Since
.beta.-catenin is the most important adaptor of the Wnt signaling
it promotes expression of oncogenic factors in response to Wnt
ligands.
[0007] Wnt signaling is also regulated by a number of secreted
polypeptide antagonists. These include four secreted Dickkopf (Dkk)
proteins (Monaghan et al., Mech Dev, 1999. 87: 45-56; Krupnik et
al., Gene, 1999. 238: 301-13). Among these four Dkk proteins, DKK1,
2 and 4 have been demonstrated to be effective antagonists of
canonical Wnt signaling (Mao et al., Nature, 2001. 411: 321-5;
Semenov et al., Curr Biol, 2001. 11: 951-61; Bafico et al., Nat
Cell Biol, 2001. 3: 683-6; Niehrs, Nature, 2006. 25: 7469-81) by
directly binding to Wnt coreceptor LRP 5/6 with high affinities
(Mao et al., Nature, 2001. 411: 321-5; Semenov et al., Curr Biol,
2001. 11: 951-61; Bafico et al., Nat Cell Biol, 2001. 3: 683-6).
While DKK1 is reported to play a crucial role in head and heart
formation in vertebrate development (Niida et al., Oncogene, 2004,
November 4; 23(52):8520-6), Dkk2 does not appear to play critical
roles in vertebrate development. Mice lacking Dkk2 have lower blood
glucose (Li et al., Proc Natl Acad Sci USA, 2012. 109: 11402-7),
reduced bone mass (Li et al., Nat Genet, 2005. 37: 945-52) and
defective ocular surface epithelia (Gage et al., Dev Biol, 2008.
317: 310-24; Mukhopadhyay et al., Development, 2006. 133: 2149-54).
Given that DKK proteins are Wnt antagonists, the conventional
wisdom is that inactivation of DKK would increase Wnt activity and
hence accelerate cancer formation. However, their roles in cancer
formation has not been directly investigated.
[0008] The Dkk molecules contain two conserved cysteine-rich
domains (Niehrs, Nature, 2006. 25: 7469-81). Previously, it was
shown that the second Cys-rich domains of DKK1 and DKK2 played a
more important role in the inhibition of canonical Wnt signaling
(Li et al., J Biol Chem, 2002. 277: 5977-81; Brott and Sokol Mol.
Cell. Biol., 2002. 22: 6100-10). More recently, the structure of
the second Cys-rich domain of DKK2 was solved and delineated amino
acid residues on the domain that are required for DKK interaction
with LRP5/6 and those for Kremens (Chen et al., J Biol Chem, 2008.
283: 23364-70; Wang et al., J Biol Chem, 2008. 283: 23371-5). Dkk
interaction with LRP5/6 underlie the primary mechanism for
Dkk-mediated inhibition of Wnt. Although Dkk interaction with
Kremen, also a transmembrane protein, was shown to facilitate Dkk
antagonism of Wnt signaling, this interaction may have other
unresolved functions. Ala scan mutagenesis identified amino acid
residues on the third YWTD repeat domain of LRP5 as being important
for binding to DKK1 and DKK2 (Zhang et al., Mol. Cell. Biol., 2004.
24: 4677-84). These results have been confirmed by the structural
studies of a DKK1/LRP6 third and fourth YWTD repeat domain complex
(Cheng et al., Nat Struct Mol Biol, 2011. 18: 1204-10; Chen et al.,
Dev Cell, 2011. 21: 848-61; Ahn et al., Dev Cell, 2011. 21: 862-73;
Bourhis et al., Structure, 2011. 19: 1433-42). One of the
structural studies also revealed a second DKK-LRP interaction site
between the N-terminus of DKK and the first YWTD repeat domain of
LRP (Bourhis et al., Structure, 2011. 19: 1433-42).
[0009] Although Wnt signaling was initially discovered for its role
in early embryonic development and for its promotion of
tumorigenesis, recent studies have revealed that is plays important
roles in a wide range of biological processes. The present
invention derives from unexpected discovery of a role of a Wnt
antagonist, against the conventional wisdom, in tumor promotion.
The neutralization of this Wnt inhibitor, which would result in
alteration of Wnt signaling, inhibits tumor formation probably by
modulating the tumor immune microenvironment.
[0010] Clearly there is a need of new ways to diminish cancer cell
proliferation, to trigger cancer cell death, and to treat cancer.
The current invention fulfills this need. Furthermore, the present
invention satisfies the need for improving anti-cancer
immunotherapy and cancer diagnosis.
SUMMARY OF THE INVENTION
[0011] The present invention relates to compositions and methods of
treating a cancer in a subject in need thereof.
[0012] In one aspect, the method of treating a cancer comprises
administering to the subject an effective amount of a humanized
anti-Dickkopf2 (anti-DKK2) antibody or fragment thereof in a
pharmaceutical acceptable carrier.
[0013] In another aspect, the invention includes a pharmaceutical
composition for treating a cancer in a subject. The pharmaceutical
composition of the invention comprises a humanized anti-Dickkopf2
(anti-DKK2) antibody or fragment thereof and a pharmaceutical
acceptable carrier.
[0014] In another aspect, the invention includes a method for
providing anti-tumor immunity in a subject. In yet another aspect,
the invention includes a method for stimulating a T cell-mediated
immune response to a cell population or tissue in a subject. The
method of the invention comprises administering to the subject an
effective amount of a humanized anti-Dickkopf2 (anti-DKK2) antibody
or fragment thereof with a pharmaceutical acceptable carrier. In
some embodiments, the T cell-mediated immune response is a
CD8.sup.+ cytotoxic T lymphocyte (CTL) response.
[0015] The invention also provides a method of diagnosing a cancer
and a method of diagnosing a predisposition for developing a cancer
in a subject. These methods comprise determining the expression
level of a DKK2 gene in a biological sample from the subject,
wherein an increase in the expression level of DKK2 in the
biological sample from the subject as compared with the level of
DKK2 expression in a control biological sample from a subject not
having a cancer is an indication that the subject has a cancer or a
predisposition for developing a cancer, and wherein when a cancer
or a predisposition for developing a cancer is detected in a
subject, a humanized anti-DKK2 antibody treatment is recommended
for the subject.
[0016] The invention further provides a method for determining the
efficacy of a humanized anti-DKK2 antibody treatment for cancer in
a subject in need thereof. The method comprises determining the
expression level of Dickkopf2 (DKK2) gene in a biological sample
from the subject, wherein an increase in the expression level of
DKK2 in the biological sample from the subject as compared with the
level of DKK2 expression in a control biological sample from a
subject not having a cancer is an indication that the humanized
anti-DKK2 antibody treatment is effective, and wherein when the
humanized anti-DKK2 antibody treatment is determined to be
effective, an additional treatment is recommended for the
subject.
[0017] In a further aspect, the invention includes a composition
comprising a humanized anti-Dickkopf2 (anti-DKK2) antibody
targeting a DKK2 epitope comprising the amino acid sequence SEQ ID
NO: 5.
[0018] In yet a further aspect, the invention includes a kit for
diagnosing a cancer or a predisposition for developing a cancer or
a metastasis in a subject. The kit of the invention comprises a
humanized anti-DKK2 antibody targeting a DKK2 epitope comprising
the amino acid sequence SEQ ID NO: 5.
[0019] In some embodiments, the cancer comprises a tumor comprising
cells that express an adenomatosis polyposis coli (APC) mutation.
In some embodiments, the humanized anti-DKK2 antibody possesses
neutralizing activity. In other embodiments, the humanized
anti-DKK2 antibody targets a DDK2 neutralizing epitope comprising
the amino acid sequence SEQ ID NO: 5. In yet other embodiments, the
humanized anti-DKK2 antibody comprises at least one of the amino
acid sequences selected from the group consisting of SEQ ID NOs: 1,
2 and 3.
[0020] In some embodiments, the cancer is selected from the group
consisting of colorectal cancer, pancreatic cancer, gastric cancer,
intestinal cancer, pancreatic cancer, and esophageal cancer. In
some embodiments, the cancer is metastatic.
[0021] In some embodiments, the compositions and methods of the
invention further comprise administering to the subject an
additional agent selected from the group consisting of a
chemotherapeutic agent, an anti-cell proliferation agent, an
immunotherapeutic agent and any combination thereof. In some
embodiments, the additional agent is a programmed cell death 1
(PD-1) antibody. In other embodiments, the humanized anti-DKK2
antibody and the additional agent are co-administered to the
subject. In yet other embodiments, the humanized anti-DKK2 antibody
and the additional agent are co-formulated and are co-administered
to the subject.
[0022] In some embodiments, the route of administration is selected
from the group consisting of inhalation, oral, rectal, vaginal,
parenteral, topical, transdermal, pulmonary, intranasal, buccal,
ophthalmic, intrathecal, and any combination thereof.
[0023] In some embodiments, the expression level of DKK2 in the
biological sample from the subject is at least 10% greater than the
normal control level. In some embodiments, the expression level of
DKK2 in the biological sample from the subject or normal control is
determined using a method selected from the group consisting of
detecting mRNA of the gene, detecting a protein encoded by the
gene, and detecting a biological activity of the protein encoded by
the gene. In some embodiments, the additional treatment comprises
at least one selected from the group consisting of chemotherapy,
radiation therapy, immunotherapy and cancer vaccine therapy.
[0024] In some embodiments, the subject is a mammal. In other
embodiments, the mammal is a human.
BRIEF DESCRIPTION OF THE DRAWINGS
[0025] For the purpose of illustrating the invention, there are
depicted in the drawings certain embodiments of the invention.
However, the invention is not limited to the precise arrangements
and instrumentalities of the embodiments depicted in the
drawings.
[0026] FIGS. 1A-1D are a series of box plots depicting the
upregulation of DKK2 gene expression in human GI tumors based on
the analysis of microarray data in the public domain.
[0027] FIGS. 2A-2B are series of images depicting the detection of
DKK2 proteins in histological sections of tumors of various tissue
origins by immunohistostaining using the 5F8 Anti-DKK2 monoclonal
antibody (mAb).
[0028] FIG. 3 is a series of histograms showing that genetic
inactivation of DKK2 suppresses tumor progression in the APC(min)
(aka, APC.sup.min/+) mice, a mouse colon cancer model. n>10, *,
p<0.01.
[0029] FIG. 4 is a series of images illustrating the decreased
tumor burden in APCKO (APC.sup.min/+DKK2.sup.-/-) mice. These
images showed that APCKO tumors tend to be smaller and less
frequent than those of APC mice.
[0030] FIG. 5 is a series of graphs depicting the binding of mAb
5F8 and 1A10 antibody to the DKK2 protein and the ability of mAb
5F8 and 1A10 to reverse the inhibition of Wnt activity by DKK2
protein via a Wnt activity assay in HEK293 cells.
[0031] FIG. 6 is a histogram demonstrating the decrease in polyps
volume in presence of the mAb 5F8 antibody in the APC(min) mice.
APC(min) mice were treated with 150 .mu.g mAb 5F8 twice a week for
six weeks starting at the age of 10 weeks.
[0032] FIG. 7 is a graph depicting the suppressive effect of mAb
5F8 on allograft LLC tumor growth in comparison to anti-PD-1.
Immunocompetent C57B1 mice were grafted with tumor cells and mAb
treatment started at Day 3 (n=5).
[0033] FIG. 8 is a graph depicting the effect of mAb 5F8 on the
life extension of mice grafted with LLC tumor cells in comparison
to anti-PD-1. The experiment was done similarly as in FIG. 7. Mice
with tumor volume larger than 1.5 CM.sup.3 were considered dead and
euthanized.
[0034] FIG. 9 is a graph depicting the suppressive effect of mAb
5F8 on allograft MC38 tumor growth in comparison to anti-PD-1.
Immunocompetent C57B1 mice were grafted with tumor cells and mAb
treatment started at Day 6, (n=5). The increases in tumor volume
were plotted.
[0035] FIG. 10 is a series of histograms and images showing that
mAb 5F8 neutralization reduces tumor burden accompanied by
increases in Granzyme B-positive cells and tumor cell death in an
allograft tumor model. Mouse colon cancer cells (MC38) were grafted
subcutaneously to immunocompetent C57BL mice and treated with the
anti-DKK2 mAb (5F8, also known as YAL-008-1-5F8) starting 6 days
after engraftment. Tumor growth curves and immunostaining of tumor
sections for apoptotic cells and Granzyme B positive cells are
shown. n=5
[0036] FIG. 11 is a series of histograms depicting that
neutralizing anti-DKK2 antibody increases Granzyme B-positive NK
and CD8 cells. Flow cytometry analysis of the cells in the
allograft tumors revealed that DKK2 neutralization did not affect
the number of CD45 hematopoietic cells, NK or CD8.sup.+ cells, but
increased the percentage of Granzyme B positive hematopoietic
cells, NK and CD8.sup.+ cells in the tumors. n=5
[0037] FIG. 12 is a series of graph and histogram depicting the
effect of humanized anti-DKK2 antibodies on tumor progression in an
allograft model. MC38 cells were inoculated to C57BL mice (8 weeks
old) and treated with the antibodies at Days 6, 9 and 12 (200
.mu.g/treatment). The antibodies showed significant inhibition of
tumor growth. *, p<0.05 vs. control IgG (n=5, Student's t-Test).
Tumors were analyzed by flow cytometry.
[0038] FIG. 13 is a series of histograms depicting the effect of
humanized anti-DKK2 antibody 5F8-HXT1-V2 on NK and CD8 cell
activation. 5F5-HXT1-V2 treatment increased Granzyme B-positive
immune cells, including CD8 positive lymphocytes and NK1.1 positive
neutral killer cells. *, p<0.05 vs. control IgG (n=5, Student's
t-Test).
[0039] FIG. 14 is a series of graph and histogram showing that the
suppressive effect of mouse anti-DKK2 antibody Y008-1-5F8 or its
humanized antibody 5F8-HXT1-V2 on grafted MC38 tumor progression is
dependent on the host immunity. These antibodies failed to show
significantly suppressive effect on the tumor progression in
MC38-grafted immunodeficient NSG mice purchased from JAX.
[0040] FIG. 15 is a graph demonstrating the binding of humanized
anti-DKK2 antibodies to human DKK2 protein. Human DKK2 protein was
coated on a ELISA plate and then incubated with the anti-DKK2
antibody followed by HRP-conjugated secondary antibody. The binding
was determined using a chemiluminescence assay after the
subtraction of background binding of the antibody to the plate.
[0041] FIGS. 16A-16B are lists of the amino acid sequences of
humanized anti-DKK2 antibodies. The antibody humanization was based
on mouse anti-DKK2 5F8 monoclonal antibody (5F8 mAb). FIG. 16A:
list of the amino acid sequences of one version of the humanized
anti-DKK2 antibody, 5F8-HXT1-V1, comprising the heavy chain 1 (HC1,
IgG1; SEQ ID NO: 1) and light chain 1 (LC1, Kappa; SEQ ID NO: 2).
FIG. 16B: list of the amino acid sequences of a second version of
the humanized anti-DKK2 antibody, 5F8-HXT1-V2, comprising the heavy
chain 2 (HC2, IgG1; SEQ ID NO: 3) and light chain 1 (LC1, Kappa;
SEQ ID NO: 2). The residues highlighted in red denote those
different between 5F8-HXT1-V1 and 5F8-HXT1-V2. The residues in bold
refer to complementarity determining regions (CDRs).
[0042] FIG. 17 is a graph demonstrating that DKK2 directly
inhibited Granzyme B expression in a human NK cell line (NK92)
together with Wnt5A. Recombinant Wnt5a and DKK2 (200 ng/ml) were
added to NK-92MI cells for 24 hours and Granzyme B contents were
analyzed by flow cytometry.
[0043] FIG. 18 is a list of the amino acid sequences of the antigen
(SEQ ID NO: 4) and the derived epitope for humanized anti-DKK2
antibodies (SEQ ID NO: 5).
DETAILED DESCRIPTION OF THE INVENTION
[0044] The present invention relates to the unexpected discovery
that inhibition of Dickkopf2 (DKK2) results in suppression of
tumors' formation accompanied by increased cytotoxic activity of
immune effector cells including neutral killer (NK) cells and
CD8.sup.+ cytotoxic T lymphocytes (CTLs), and increased tumor cell
apoptosis. Thus, in various embodiments described herein, the
methods of the invention relate to methods of treating cancer by
administering to a patient an effective amount of humanized
anti-DKK2 antibody, methods for providing anti-tumor immunity in a
subject, methods of stimulating immune effector cell-mediated
immune responses to a cell population or a tissue in a subject.
Additionally, the current invention includes methods of diagnosing
a cancer or a predisposition of developing a cancer and methods for
determining the use of immunotherapy treatment for treating cancer.
Furthermore, the invention encompasses a pharmaceutical composition
for treating cancer as well as a kit for carrying out the
aforementioned methods.
Definitions
[0045] Unless defined otherwise, all technical and scientific terms
used herein have the same meaning as commonly understood by one of
ordinary skill in the art to which the invention pertains. Although
any methods and materials similar or equivalent to those described
herein may be used in the practice for testing of the present
invention, the preferred materials and methods are described
herein. In describing and claiming the present invention, the
following terminology will be used.
[0046] It is also to be understood that the terminology used herein
is for the purpose of describing particular embodiments only, and
is not intended to be limiting.
[0047] As used herein, the articles "a" and "an" are used to refer
to one or to more than one (i.e., to at least one) of the
grammatical object of the article. By way of example, "an element"
means one element or more than one element.
[0048] As used herein when referring to a measurable value such as
an amount, a temporal duration, and the like, the term "about" is
meant to encompass variations of .+-.20% or .+-.10%, more
preferably .+-.5%, even more preferably .+-.1%, and still more
preferably .+-.0.1% from the specified value, as such variations
are appropriate to perform the disclosed methods.
[0049] As used herein, "10% greater" refers to expression levels
which are at least 10% or more, for example, 20%, 30%, 40%, or 50%,
60%, 70%, 80%, 90% higher or more, and/or 1.1 fold, 1.2 fold, 1.4
fold, 1.6 fold, 1.8 fold, 2.0 fold higher or more, and any and all
whole or partial increments therebetween, than a control.
[0050] As used herein, the terms "control," or "reference" are used
interchangeably, and refer to a value that is used as a standard of
comparison (e.g., DKK2 level of expression in a healthy
subject).
[0051] A "subject" or "patient," as used therein, may be a human or
non-human mammal. Non-human mammals include, for example, livestock
and pets, such as ovine, bovine, porcine, canine, feline and murine
mammals. Preferably, the subject is human.
[0052] A "mutation" as used therein is a change in a DNA sequence
resulting in an alteration from its natural state. The mutation can
comprise deletion and/or insertion and/or duplication and/or
substitution of at least one desoxyribonucleic acid base such as a
purine (adenine and/or thymine) and/or a pyrimidine (guanine and/or
cytosine) Mutations may or may not produce discernible changes in
the observable characteristics (phenotype) of an organism
(subject).
[0053] The term "immunogenicity" as used herein, is the ability of
a particular substance, such as an antigen or epitope, to provoke
an immune response in the body of a mammal. This immune response
could be humoral and/or cell-mediated.
[0054] The term "activation", as used herein, refers to the state
of a cell following sufficient cell surface moiety ligation to
induce a noticeable biochemical or morphological change. Within the
context of T cells, such activation refers to the state of a T cell
that has been sufficiently stimulated to induce cellular
proliferation. Activation of a T cell may also induce cytokine
production and performance of regulatory or cytolytic effector
functions. Within the context of other cells, this term infers
either up or down regulation of a particular physico-chemical
process The term "activated T cells" indicates T cells that are
currently undergoing cell division, cytokine production,
performance of regulatory or cytolytic effector functions, and/or
has recently undergone the process of "activation."
[0055] As used herein, the terms "peptide," "polypeptide," and
"protein" are used interchangeably, and refer to a compound
comprised of amino acid residues covalently linked by peptide
bonds. A protein or peptide must contain at least two amino acids,
and no limitation is placed on the maximum number of amino acids
that may comprise a protein or peptide's sequence. Polypeptides
include any peptide or protein comprising two or more amino acids
joined to each other by peptide bonds. As used herein, the term
refers to both short chains, which also commonly are referred to in
the art as peptides, oligopeptides and oligomers, for example, and
to longer chains, which generally are referred to in the art as
proteins, of which there are many types. "Polypeptides" include,
for example, biologically active fragments, substantially
homologous polypeptides, oligopeptides, homodimers, heterodimers,
variants of polypeptides, modified polypeptides, derivatives,
analogs, fusion proteins, among others. The polypeptides include
natural peptides, recombinant peptides, synthetic peptides, or a
combination thereof.
[0056] In the context of the present invention, the following
abbreviations for the commonly occurring nucleic acid bases are
used. "A" refers to adenosine, "C" refers to cytosine, "G" refers
to guanosine, "T" refers to thymidine, and "U" refers to
uridine.
[0057] The term "RNA" as used herein is defined as ribonucleic
acid.
[0058] The term the "immunotherapeutic agent" as used herein is
meant to include any agent that modulates the patient's immune
system. "immunotherapy" refers to the treatment that alters the
patient's immune system.
[0059] The term "therapeutic" as used herein means a treatment
and/or prophylaxis. A therapeutic effect is obtained by
suppression, remission, or eradication of a disease state.
[0060] The term "treatment" as used within the context of the
present invention is meant to include therapeutic treatment as well
as prophylactic, or suppressive measures for the disease or
disorder. Thus, for example, the term treatment includes the
administration of an agent prior to or following the onset of a
disease or disorder thereby preventing or removing all signs of the
disease or disorder. As another example, administration of the
agent after clinical manifestation of the disease to combat the
symptoms of the disease comprises "treatment" of the disease. This
includes prevention of cancer.
[0061] The term "biological sample" refers to a sample obtained
from an organism or from components (e.g., cells) of an organism.
The sample may be of any biological tissue or fluid. Frequently the
sample will be a "clinical sample" which is a sample derived from a
patient. Such samples include, but are not limited to, bone marrow,
cardiac tissue, sputum, blood, lymphatic fluid, blood cells (e.g.,
white cells), tissue or fine needle biopsy samples, urine,
peritoneal fluid, and pleural fluid, or cells therefrom. Biological
samples may also include sections of tissues such as frozen
sections taken for histological purposes.
[0062] "DKK protein" refers to a protein of the Dkk family of
proteins that contains one or more cysteine-rich domains. The Dkk
family of proteins includes Dkk1, Dkk2, Dkk3 and Dkk4, and any
other protein sufficiently related to one or more of these proteins
at the sequence level, structurally or functionally. This family of
proteins is described, e.g., in Krupnik et al. (1999) Gene 238:301.
Allelic variants and mutants of Dkk proteins such as those recited
herein are also encompassed by this definition.
[0063] The term "equivalent," when used in reference to nucleotide
sequences, is understood to refer to nucleotide sequences encoding
functionally equivalent polypeptides. Equivalent nucleotide
sequences will include sequences that differ by one or more
nucleotide substitutions, additions- or deletions, such as allelic
variants; and will, therefore, include sequences that differ from
the nucleotide sequence of the nucleic acids described herein due
to the degeneracy of the genetic code.
[0064] "Humanized" forms of non-human (e.g., murine) antibodies are
chimeric immunoglobulins, immunoglobulin chains or fragments
thereof (such as Fv, Fab, Fab', F(ab')2 or other antigen-binding
subsequences of antibodies) which contain minimal sequence derived
from non-human immunoglobulin. For the most part, humanized
antibodies are human immunoglobulins (recipient antibody) in which
residues from a complementary-determining region (CDR) of the
recipient are replaced by residues from a CDR of a non-human
species (donor antibody) such as mouse, rat or rabbit having the
desired specificity, affinity, and capacity. In some instances, Fv
framework region (FR) residues of the human immunoglobulin are
replaced by corresponding non-human residues. Furthermore,
humanized antibodies can comprise residues which are found neither
in the recipient antibody nor in the imported CDR or framework
sequences. These modifications are made to further refine and
optimize antibody performance. In general, the humanized antibody
will comprise substantially all of at least one, and typically two,
variable domains, in which all or substantially all of the CDR
regions correspond to those of a non-human immunoglobulin and all
or substantially all of the FR regions are those of a human
immunoglobulin sequence.
[0065] The humanized antibody optimally also will comprise at least
a portion of an immunoglobulin constant region (Fc), typically that
of a human immunoglobulin. For further details, see Jones et al.,
Nature, 321: 522-525, 1986; Reichmann et al., Nature, 332: 323-329,
1988; Presta, Curr. Op. Struct. Biol., 2: 593-596, 1992.
"Hybridization" refers to any process by which a strand of nucleic
acid binds with a complementary strand through base pairing. Two
single-stranded nucleic acids "hybridize" when they form a
double-stranded duplex. The region of double-strandedness can
include the full-length of one or both of the single-stranded
nucleic acids, or all of one single stranded nucleic acid and a
subsequence of the other single stranded nucleic acid, or the
region of double-strandedness can include a subsequence of each
nucleic acid. Hybridization also includes the formation of duplexes
which contain certain mismatches, provided that the two strands are
still forming a double stranded helix. "Stringent hybridization
conditions" refers to hybridization conditions resulting in
essentially specific hybridization. The term "specific
hybridization" of a probe to a target site of a template nucleic
acid refers to hybridization of the probe predominantly to the
target, such that the hybridization signal can be clearly
interpreted. As further described herein, such conditions resulting
in specific hybridization vary depending on the length of the
region of homology, the GC content of the region, the melting
temperature "Tm" of the hybrid. Hybridization conditions will thus
vary in the salt content, acidity, and temperature of the
hybridization solution and the washes.
[0066] The term "isolated" as used herein with respect to nucleic
acids, such as DNA or RNA, refers to molecules separated from other
DNAs or RNAs, respectively, that are present in the natural source
of the macromolecule. The term isolated as used herein also refers
to a nucleic acid or peptide that is substantially free of cellular
material, viral material, or culture medium when produced by
recombinant DNA techniques, or chemical precursors or other
chemicals when chemically synthesized. Moreover, an "isolated
nucleic acid" is meant to include nucleic acid fragments which are
not naturally occurring as fragments and would not be found in the
natural state. The term "isolated" is also used herein to refer to
polypeptides which are isolated from other cellular proteins and is
meant to encompass both purified and recombinant polypeptides. An
"isolated cell" or "isolated population of cells" is a cell or
population of cells that is not present in its natural
environment.
[0067] As used herein, the term "nucleic acid" refers to
polynucleotides such as deoxyribonucleic acid (DNA), and, where
appropriate, ribonucleic acid (RNA). The term should also be
understood to include, as equivalents, analogs of either RNA or DNA
made from nucleotide analogs, and, as applicable to the embodiment
being described, single (sense or antisense) and double-stranded
polynucleotides. ESTs, chromosomes, cDNAs, mRNAs, and rRNAs are
representative examples of molecules that may be referred to as
nucleic acids.
[0068] A "stem cell" refers to a cell that is capable of
differentiating into a desired cell type. A stem cell includes
embryonic stem (ES) cells; adult stem cells; and somatic stem
cells, such as SP cells from uncommitted mesoderm. A "totipotent"
stem cell is capable of differentiating into all tissue types,
including cells of the meso-, endo-, and ecto-derm. A "multipotent"
or "pluripotent" stem cell is a cell which is capable of
differentiating into at least two of several fates.
[0069] The term "variant," when used in the context of a
polynucleotide sequence, may encompass a polynucleotide sequence
related to that of a gene or the coding sequence thereof. This
definition may also include, for example, "allelic," "splice,"
"species," or "polymorphic" variants. The polypeptides generally
will have significant amino acid identity relative to each other. A
polymorphic variant is a variation in the polynucleotide sequence
of a particular gene between individuals of a given species.
Polymorphic variants may encompass "single nucleotide
polymorphisms" (SNPs) in which the polynucleotide sequence varies
by one base. The presence of SNPs may be indicative of, for
example, a certain population, a disease state, or a propensity for
a disease state.
[0070] The term "Wnt antagonist" or "Wnt inhibitor" refers to a
molecule or composition which downregulates (e.g., suppresses or
inhibits) signal transduction via the Wnt pathway. Downregulation
may occur directly, e.g., by inhibiting a bioactivity of a protein
in a Wnt signaling pathway, or indirectly, e.g., by inhibiting
downstream mediators of Wnt signaling (such as TCF3) or by
decreasing stability of .beta.-catenin, etc. Examples of Wnt
antagonists include, but are not limited to, Dkk polypeptides
(Glinka et al., Nature, 1998, 391: 357-62; Niehrs, Trends Genet,
1999, 15(8):314-9), crescent polypeptides (Marvin et al., Genes
& Dev., 2001, 15: 316-327), cerberus polypeptides (U.S. Pat.
No. 6,133,232), WISE/Sclerostin (Li et al., J Biol Chem, 2005. 280:
19883-7), axin polypeptides (Zeng et al., Cell, 1997, 90(1):181-92;
Itoh et al., Curr Biol, 1998, 8(10):591-4; Willert et al.,
Development, 1999, 126(18):4165-73), Frzb polypeptides (Cadigan et
al., Cell, 1998, 93(5):767-77; U.S. Pat. Nos. 6,133,232;
6,485,972), glycogen synthase kinase (GSK) polypeptides (He et al.,
Nature, 1995) 374(6523): 617-22), T-cell factor (TCF) polypeptides
(Molenaar et al., Cell, 1996, 86(3):391-9), dominant negative
dishevelled polypeptides (Wallingford et al., Nature, 2000,
405(6782): 81-5), dominant negative N-cadherin polypeptides (U.S.
Pat. No. 6,485,972), dominant negative .beta.-catenin polypeptides
(U.S. Pat. No. 6,485,972), dominant negatives of downstream
transcription factors (e.g., TCF, etc.), dominant negatives of Wnt
polypeptides, agents that disrupt LRP-frizzled-wnt complexes, and
agents that sequester Wnts (e.g., crescent and antibodies to Wnts).
Wnt antagonist polypeptides may be of mammalian origin, e.g.,
human, mouse, rat, canine, feline, bovine, or ovine, or
non-mammalian origin, e.g., from Xenopus, zebrafish, Drosophila,
chicken, or quail. Wnt antagonists also encompass fragments,
homologs, derivatives, allelic variants, and peptidomimetics of
various polypeptides, including, but not limited to, Dkk, crescent,
cerberus, axin, Frzb, GSK, TCF, dominant negative dishevelled,
dominant negative N-cadherin, and dominant negative .beta.-catenin
polypeptides. In other embodiments, Wnt antagonists also include
antibodies (e.g., Wnt-specific antibodies), polynucleotides and
small molecules.
[0071] The term "cancer" as used herein, includes any malignant
tumor including, but not limited to, carcinoma, sarcoma. Cancer
arises from the uncontrolled and/or abnormal division of cells that
then invade and destroy the surrounding tissues. As used herein,
"proliferating" and "proliferation" refer to cells undergoing
mitosis. As used herein, "metastasis" refers to the distant spread
of a malignant tumor from its sight of origin. Cancer cells may
metastasize through the bloodstream, through the lymphatic system,
across body cavities, or any combination thereof.
[0072] The term "carcinoma" refers to a malignant new growth made
up of epithelial cells tending to infiltrate surrounding tissues,
and to give rise to metastases.
[0073] The term "cancer vaccine" refers to a vaccine that
stimulates the immune system to fight a cancer or to fight the
agents that contribute to the development of a cancer. There are
two broad types of cancer vaccines: Preventive cancer vaccines,
which are intended to prevent cancer from developing in a healthy
subject; and therapeutic cancer vaccines, which are intended to
treat an existing cancer by strengthening the body's natural
defenses against the cancer (Lollini et al., Nature Reviews Cancer,
2006; 6(3):204-216). As used herein the term "cancer vaccine"
should be construed to include both preventive and therapeutic
cancer vaccines.
[0074] The term "metastasis" refers to the spread of a cancer from
one organ or part to another non-adjacent organ or part.
[0075] The term "ameliorating" or "treating" means that the
clinical signs and/or the symptoms associated with the cancer or
melanoma are lessened as a result of the actions performed. The
signs or symptoms to be monitored will be characteristic of a
particular cancer or melanoma and will be well known to the skilled
clinician, as will the methods for monitoring the signs and
conditions. For example, the skilled clinician will know that the
size or rate of growth of a tumor can monitored using a diagnostic
imaging method typically used for the particular tumor (e.g., using
ultrasound or magnetic resonance image (MRI) to monitor a
tumor).
[0076] As used herein, the term "pharmaceutical composition" refers
to a mixture of at least one compound useful within the invention
with other chemical components, such as carriers, stabilizers,
diluents, dispersing agents, suspending agents, thickening agents,
and/or excipients. The pharmaceutical composition facilitates
administration of the compound to an organism. Multiple techniques
of administering a compound exist in the art including, but not
limited to: intravenous, oral, aerosol, parenteral, ophthalmic,
pulmonary and topical administration.
[0077] The language "pharmaceutically acceptable carrier" includes
a pharmaceutically acceptable salt, pharmaceutically acceptable
material, composition or carrier, such as a liquid or solid filler,
diluent, excipient, solvent or encapsulating material, involved in
carrying or transporting a compound(s) of the present invention
within or to the subject such that it may perform its intended
function. Typically, such compounds are carried or transported from
one organ, or portion of the body, to another organ, or portion of
the body. Each salt or carrier must be "acceptable" in the sense of
being compatible with the other ingredients of the formulation, and
not injurious to the subject. Some examples of materials that may
serve as pharmaceutically acceptable carriers include: sugars, such
as lactose, glucose and sucrose; starches, such as corn starch and
potato starch; cellulose, and its derivatives, such as sodium
carboxymethyl cellulose, ethyl cellulose and cellulose acetate;
powdered tragacanth; malt; gelatin; talc; excipients, such as cocoa
butter and suppository waxes; oils, such as peanut oil, cottonseed
oil, safflower oil, sesame oil, olive oil, corn oil and soybean
oil; glycols, such as propylene glycol; polyols, such as glycerin,
sorbitol, mannitol and polyethylene glycol; esters, such as ethyl
oleate and ethyl laurate; agar; buffering agents, such as magnesium
hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water;
isotonic saline; Ringer's solution; ethyl alcohol; phosphate buffer
solutions; diluent; granulating agent; lubricant; binder;
disintegrating agent; wetting agent; emulsifier; coloring agent;
release agent; coating agent; sweetening agent; flavoring agent;
perfuming agent; preservative; antioxidant; plasticizer; gelling
agent; thickener; hardener; setting agent; suspending agent;
surfactant; humectant; carrier; stabilizer; and other non-toxic
compatible substances employed in pharmaceutical formulations, or
any combination thereof. As used herein, "pharmaceutically
acceptable carrier" also includes any and all coatings,
antibacterial and antifungal agents, and absorption delaying
agents, and the like that are compatible with the activity of the
compound, and are physiologically acceptable to the subject.
Supplementary active compounds may also be incorporated into the
compositions.
[0078] The term "antibody" or "Ab" as used herein, refers to a
protein, or polypeptide sequence derived from an immunoglobulin
molecule which specifically binds to a specific epitope on an
antigen. Antibodies can be intact immunoglobulins derived from
natural sources or from recombinant sources and can be
immunoreactive portions of intact immunoglobulins. The antibodies
useful in the present invention may exist in a variety of forms
including, for example, polyclonal antibodies, monoclonal
antibodies, intracellular antibodies ("intrabodies"), Fv, Fab and
F(ab).sub.2, as well as single chain antibodies (scFv) and
humanized antibodies (Harlow et al., 1998, Using Antibodies: A
Laboratory Manual, Cold Spring Harbor Laboratory Press, NY; Harlow
et al., 1989, Antibodies: A Laboratory Manual, Cold Spring Harbor,
N.Y.; Houston et al., 1988, Proc. Natl. Acad. Sci. USA
85:5879-5883; Bird et al., 1988, Science 242:423-426). An antibody
may be derived from natural sources or from recombinant sources.
Antibodies are typically tetramers of immunoglobulin molecules.
[0079] By the term "synthetic antibody" as used herein, is meant an
antibody generated using recombinant DNA technology, such as, for
example, an antibody expressed by a bacteriophage as described
herein. The term should also be construed to mean an antibody
generated by the synthesis of a DNA molecule encoding the antibody
and which DNA molecule expresses an antibody protein, or an amino
acid sequence specifying the antibody, wherein the DNA or amino
acid sequence has been obtained using synthetic DNA or amino acid
sequence technology which is available and well known in the art.
The term "antibody fragment" refers to at least one portion of an
intact antibody, or recombinant variants thereof, and refers to the
antigen binding domain, e.g., an antigenic determining variable
region of an intact antibody, that is sufficient to confer
recognition and specific binding of the antibody fragment to a
target, such as an antigen. Examples of antibody fragments include,
but are not limited to, Fab, Fab', F(ab').sub.2, and Fv fragments,
scFv antibody fragments, linear antibodies, single domain
antibodies such as sdAb (either VL or VH), VIHH domains, and
multi-specific antibodies formed from antibody fragments. The term
"scFv" refers to a fusion protein comprising at least one antibody
fragment comprising a variable region of a light chain and at least
one antibody fragment comprising a variable region of a heavy
chain, wherein the light and heavy chain variable regions are
contiguously linked via a short flexible polypeptide linker, and
capable of being expressed as a single chain polypeptide, and
wherein the scFv retains the specificity of the intact antibody
from which it is derived. Unless specified, as used herein an scFv
may have the VL and VH variable regions in either order, e.g., with
respect to the N-terminal and C-terminal ends of the polypeptide,
the scFv may comprise VL-linker-VH or may comprise
VH-linker-VL.
[0080] An "antibody heavy chain," as used herein, refers to the
larger of the two types of polypeptide chains present in antibody
molecules in their naturally occurring conformations, and which
normally determines the class to which the antibody belongs.
[0081] An "antibody light chain," as used herein, refers to the
smaller of the two types of polypeptide chains present in antibody
molecules in their naturally occurring conformations. Kappa
(.kappa.) and lambda (.lamda.) light chains refer to the two major
antibody light chain isotypes.
[0082] By the term "recombinant antibody" as used herein, is meant
an antibody which is generated using recombinant DNA technology,
such as, for example, an antibody expressed by a bacteriophage or
yeast expression system. The term should also be construed to mean
an antibody which has been generated by the synthesis of a DNA
molecule encoding the antibody and which DNA molecule expresses an
antibody protein, or an amino acid sequence specifying the
antibody, wherein the DNA or amino acid sequence has been obtained
using recombinant DNA or amino acid sequence technology which is
available and well known in the art.
[0083] The term "antigen" or "Ag" as used herein is defined as a
molecule that provokes an immune response. This immune response may
involve either antibody production, or the activation of specific
immunologically-competent cells, or both. The skilled artisan will
understand that any macromolecule, including virtually all proteins
or peptides, can serve as an antigen. Furthermore, antigens can be
derived from recombinant or genomic DNA. A skilled artisan will
understand that any DNA, which comprises a nucleotide sequences or
a partial nucleotide sequence encoding a protein that elicits an
immune response therefore encodes an "antigen" as that term is used
herein. Furthermore, one skilled in the art will understand that an
antigen need not be encoded solely by a full length nucleotide
sequence of a gene. It is readily apparent that the present
invention includes, but is not limited to, the use of partial
nucleotide sequences of more than one gene and that these
nucleotide sequences are arranged in various combinations to elicit
the desired immune response. Moreover, a skilled artisan will
understand that an antigen need not be encoded by a "gene" at all.
It is readily apparent that an antigen can be generated synthesized
or can be derived from a biological sample. Such a biological
sample can include, but is not limited to a tissue sample, a tumor
sample, a cell or a biological fluid.
[0084] By the term "applicator," as the term is used herein, is
meant any device including, but not limited to, a hypodermic
syringe, a pipette, and the like, for administering the compounds
and compositions of the invention.
[0085] As used herein, "aptamer" refers to a small molecule that
can bind specifically to another molecule. Aptamers are typically
either polynucleotide- or peptide-based molecules. A polynucleotide
aptamer is a DNA or RNA molecule, usually comprising several
strands of nucleic acids, that adopts highly specific
three-dimensional conformation designed to have appropriate binding
affinities and specificities towards specific target molecules,
such as peptides, proteins, drugs, vitamins, among other organic
and inorganic molecules. Such polynucleotide aptamers can be
selected from a vast population of random sequences through the use
of systematic evolution of ligands by exponential enrichment. A
peptide aptamer is typically a loop of about 10 to about 20 amino
acids attached to a protein scaffold that bind to specific ligands.
Peptide aptamers may be identified and isolated from combinatorial
libraries, using methods such as the yeast two-hybrid system.
[0086] The term "anti-tumor effect" as used herein, refers to a
biological effect which can be manifested by various means,
including but not limited to, e.g., a decrease in tumor volume, a
decrease in the number of tumor cells, a decrease in the number of
metastases, an increase in life expectancy, decrease in tumor cell
proliferation, decrease in tumor cell survival, or amelioration of
various physiological symptoms associated with the cancerous
condition. An "anti-tumor effect" can also be manifested by the
ability of the peptides, polynucleotides, cells and antibodies of
the invention in prevention of the occurrence of tumor in the first
place.
[0087] The term "xenograft" as used herein, refers to a graft of
tissue taken from a donor of one species and grafted into a
recipient of another species.
[0088] The term "allograft" as used herein, refers to a graft of
tissue taken from a donor of one species and grafted into a
recipient of the same species
[0089] Ranges: throughout this disclosure, various aspects of the
invention can be presented in a range format. It should be
understood that the description in range format is merely for
convenience and brevity and should not be construed as an
inflexible limitation on the scope of the invention. Accordingly,
the description of a range should be considered to have
specifically disclosed all the possible subranges as well as
individual numerical values within that range. For example,
description of a range such as from 1 to 6 should be considered to
have specifically disclosed subranges such as from 1 to 3, from 1
to 4, from 1 to 5, from 2 to 4, from 2 to 6, from 3 to 6 etc., as
well as individual numbers within that range, for example, 1, 2,
2.7, 3, 4, 5, 5.3, and 6. This applies regardless of the breadth of
the range.
DESCRIPTION
[0090] The immune system is balanced between activation and
suppression. Evasion of immunosurveillance is one of the
prerequisites for tumor formation. One of the ways for tumors to
evade immunosurveillance is to produce elevated amount of
immunosuppressive molecules. Increasing number of immunosuppressive
molecules and mechanisms have been identified over the years.
Neutralization of these immunosuppressive molecules has been shown
to be efficacious in treating various malignancies.
[0091] The present invention relates to the discovery of a secreted
tumor formation enhancer DKK2 that suppresses neutral killer (NK)
cell and CD8.sup.+ cytotoxic T lymphocyte (CTL) activity. DKK2 is a
secreted protein, which can inhibit .beta.-catenin-mediated Wnt
signaling, alter non-.beta.-catenin-mediated Wnt activity, and may
also have Wnt-independent functions. DKK2 is expressed in many
tissues and is upregulated in human colorectal, gastric intestinal,
liver, kidney, and pancreatic cancers. Experimental evidence
described below indicates that DKK2 inhibitors and neutralizing
antibodies are key immunomodulators for treating cancers in which
DKK2 is expressed. Thus DKK2 is a promising target for treating
these cancers.
[0092] Methods of the Invention
[0093] The present invention is directed to a method of treating
cancer in a subject in need thereof the method comprising
administering to the subject an effective amount of a humanized
anti-DKK2 antibody or fragment thereof in a pharmaceutical
acceptable carrier. The humanized anti-DKK2 antibody of the
invention inhibits or reduces expression of DKK2 and/or inhibits or
reduces DKK2 activity in a cell, tissue or bodily fluid.
[0094] Antibodies
[0095] The invention includes a composition comprising a humanized
anti-DKK2 antibody. In one embodiment, the humanized anti-DKK2
antibody comprises at least one of the amino acid sequences
selected from the group consisting of SEQ ID NOs: 1, 2 and 3 (FIGS.
16A-16B).
[0096] Methods of producing antibodies are known in the art.
Exemplary techniques for the production of the antibodies used in
accordance with the present invention are herein described. It will
be appreciated by one skilled in the art that an antibody comprises
any immunoglobulin molecule, whether derived from natural sources
or from recombinant sources, which is able to specifically bind to
an epitope present on a target molecule. In one embodiment, the
target molecule comprises
[0097] When the antibody to the target molecule used in the
compositions and methods of the invention is a polyclonal antibody
(IgG), the antibody is generated by inoculating a suitable animal
with a peptide comprising full length target protein, or a fragment
thereof, an upstream regulator, or fragments thereof. These
polypeptides, or fragments thereof, may be obtained by any methods
known in the art, including chemical synthesis and biological
synthesis.
[0098] Antibodies produced in the inoculated animal that
specifically bind to the target molecule, or fragments thereof, are
then isolated from fluid obtained from the animal. Antibodies may
be generated in this manner in several non-human mammals such as,
but not limited to goat, sheep, horse, camel, rabbit, and donkey.
Methods for generating polyclonal antibodies are well known in the
art and are described, for example in Harlow et al., 1998, In:
Antibodies, A Laboratory Manual, Cold Spring Harbor, N.Y.
[0099] Monoclonal antibodies directed against a full length target
molecule, or fragments thereof, may be prepared using any
well-known monoclonal antibody preparation procedures, such as
those described, for example, in Harlow et al. (1998, In:
Antibodies, A Laboratory Manual, Cold Spring Harbor, N.Y.) and in
Tuszynski et al. (1988, Blood, 72:109-115). Human monoclonal
antibodies may be prepared by the method described in U.S. Patent
Publication No. 2003/0224490. Monoclonal antibodies directed
against an antigen are generated from mice immunized with the
antigen using standard procedures as referenced herein. Nucleic
acid encoding the monoclonal antibody obtained using the procedures
described herein may be cloned and sequenced using technology which
is available in the art, and is described, for example, in Wright
et al., 1992, Critical Rev. Immunol. 12(3,4):125-168, and the
references cited therein.
[0100] When the antibody used in the methods of the invention is a
biologically active antibody fragment or a synthetic antibody
corresponding to antibody to a full length target molecule, or
fragments thereof, the antibody is prepared as follows: a nucleic
acid encoding the desired antibody or fragment thereof is cloned
into a suitable vector. The vector is transfected into cells
suitable for the generation of large quantities of the antibody or
fragment thereof. DNA encoding the desired antibody is then
expressed in the cell thereby producing the antibody. The nucleic
acid encoding the desired peptide may be cloned and sequenced using
technology available in the art, and described, for example, in
Wright et al., 1992, Critical Rev. in Immunol. 12(3,4): 125-168 and
the references cited therein. Alternatively, quantities of the
desired antibody or fragment thereof may also be synthesized using
chemical synthesis technology. If the amino acid sequence of the
antibody is known, the desired antibody can be chemically
synthesized using methods known in the art.
[0101] In one embodiment, the present invention includes the use of
humanized antibodies specifically reactive with an epitope present
on a target molecule. These antibodies are capable of binding to
the target molecule. The humanized antibodies useful in the
invention have a human framework and have one or more
complementarity determining regions (CDRs) from an antibody,
typically a mouse antibody, specifically reactive with a targeted
cell surface molecule.
[0102] In some embodiments, a non-human antibody can be humanized,
where specific sequences or regions of the antibody are modified to
increase similarity to an antibody naturally produced in a human.
For instance, in the present invention, the antibody or fragment
thereof may comprise a non-human mammalian scFv. In one embodiment,
the antigen binding domain portion is humanized.
[0103] A humanized antibody can be produced using a variety of
techniques known in the art, including but not limited to,
CDR-grafting (see, e.g., European Patent No. EP 239,400;
International Publication No. WO 91/09967; and U.S. Pat. Nos.
5,225,539, 5,530,101, and 5,585,089, each of which is incorporated
herein in its entirety by reference), veneering or resurfacing
(see, e.g., European Patent Nos. EP 592,106 and EP 519,596; Padlan,
1991, Molecular Immunology, 28(4/5):489-498; Studnicka et al.,
1994, Protein Engineering, 7(6):805-814; and Roguska et al., 1994,
PNAS, 91:969-973, each of which is incorporated herein by its
entirety by reference), chain shuffling (see, e.g., U.S. Pat. No.
5,565,332, which is incorporated herein in its entirety by
reference), and techniques disclosed in, e.g., U.S. Patent
Application Publication No. US2005/0042664, U.S. Patent Application
Publication No. US2005/0048617, U.S. Pat. Nos. 6,407,213,
5,766,886, International Publication No. WO 9317105, Tan et al., J.
Immunol., 169:1119-25 (2002), Caldas et al., Protein Eng.,
13(5):353-60 (2000), Morea et al., Methods, 20(3):267-79 (2000),
Baca et al., J. Biol. Chem., 272(16):10678-84 (1997), Roguska et
al., Protein Eng., 9(10):895-904 (1996), Couto et al., Cancer Res.,
55 (23 Supp):5973s-5977s (1995), Couto et al., Cancer Res.,
55(8):1717-22 (1995), Sandhu J S, Gene, 150(2):409-10 (1994), and
Pedersen et al., J. Mol. Biol., 235(3):959-73 (1994), each of which
is incorporated herein in its entirety by reference. Often,
framework residues in the framework regions will be substituted
with the corresponding residue from the CDR donor antibody to
alter, preferably improve, antigen binding. These framework
substitutions are identified by methods well-known in the art,
e.g., by modeling of the interactions of the CDR and framework
residues to identify framework residues important for antigen
binding and sequence comparison to identify unusual framework
residues at particular positions. (See, e.g., Queen et al., U.S.
Pat. No. 5,585,089; and Riechmann et al., 1988, Nature, 332:323,
which are incorporated herein by reference in their
entireties.)
[0104] A humanized antibody has one or more amino acid residues
introduced into it from a source which is nonhuman. These nonhuman
amino acid residues are often referred to as "import" residues,
which are typically taken from an "import" variable domain. Thus,
humanized antibodies comprise one or more CDRs from nonhuman
immunoglobulin molecules and framework regions from human.
Humanization of antibodies is well-known in the art and can
essentially be performed following the method of Winter and
co-workers (Jones et al., Nature, 321:522-525 (1986); Riechmann et
al., Nature, 332:323-327 (1988); Verhoeyen et al., Science,
239:1534-1536 (1988)), by substituting rodent CDRs or CDR sequences
for the corresponding sequences of a human antibody, i.e.,
CDR-grafting (EP 239,400; PCT Publication No. WO 91/09967; and U.S.
Pat. Nos. 4,816,567; 6,331,415; 5,225,539; 5,530,101; 5,585,089;
6,548,640, the contents of which are incorporated herein by
reference herein in their entirety). In such humanized chimeric
antibodies, substantially less than an intact human variable domain
has been substituted by the corresponding sequence from a nonhuman
species. In practice, humanized antibodies are typically human
antibodies in which some CDR residues and possibly some framework
(FR) residues are substituted by residues from analogous sites in
rodent antibodies. Humanization of antibodies can also be achieved
by veneering or resurfacing (EP 592,106; EP 519,596; Padlan, 1991,
Molecular Immunology, 28(4/5):489-498; Studnicka et al., Protein
Engineering, 7(6):805-814 (1994); and Roguska et al., PNAS,
91:969-973 (1994)) or chain shuffling (U.S. Pat. No. 5,565,332),
the contents of which are incorporated herein by reference herein
in their entirety.
[0105] The choice of human variable domains, both light and heavy,
to be used in making the humanized antibodies is to reduce
antigenicity. According to the so-called "best-fit" method, the
sequence of the variable domain of a rodent antibody is screened
against the entire library of known human variable-domain
sequences. The human sequence which is closest to that of the
rodent is then accepted as the human framework (FR) for the
humanized antibody (Sims et al., J. Immunol., 151:2296 (1993);
Chothia et al., J. Mol. Biol., 196:901 (1987), the contents of
which are incorporated herein by reference herein in their
entirety). Another method uses a particular framework derived from
the consensus sequence of all human antibodies of a particular
subgroup of light or heavy chains. The same framework may be used
for several different humanized antibodies (Carter et al., Proc.
Natl. Acad. Sci. USA, 89:4285 (1992); Presta et al., J. Immunol.,
151:2623 (1993), the contents of which are incorporated herein by
reference herein in their entirety).
[0106] Antibodies can be humanized with retention of high affinity
for the target antigen and other favorable biological properties.
According to one aspect of the invention, humanized antibodies are
prepared by a process of analysis of the parental sequences and
various conceptual humanized products using three-dimensional
models of the parental and humanized sequences. Three-dimensional
immunoglobulin models are commonly available and are familiar to
those skilled in the art. Computer programs are available which
illustrate and display probable three-dimensional conformational
structures of selected candidate immunoglobulin sequences.
Inspection of these displays permits analysis of the likely role of
the residues in the functioning of the candidate immunoglobulin
sequence, i.e., the analysis of residues that influence the ability
of the candidate immunoglobulin to bind the target antigen. In this
way, FR residues can be selected and combined from the recipient
and import sequences so that the desired antibody characteristic,
such as increased affinity for the target antigen, is achieved. In
general, the CDR residues are directly and most substantially
involved in influencing antigen binding.
[0107] A humanized antibody retains a similar antigenic specificity
as the original antibody. However, using certain methods of
humanization, the affinity and/or specificity of binding of the
antibody to the target antigen may be increased using methods of
"directed evolution," as described by Wu et al., J. Mol. Biol.,
294:151 (1999), the contents of which are incorporated herein by
reference herein in their entirety.
[0108] In some embodiments, an expression control DNA sequence can
be operably linked to humanized immunoglobulin coding sequences,
including naturally-associated or heterologous promoter regions.
The expression control sequences can be eukaryotic promoter systems
in vectors capable of transforming or transfecting eukaryotic host
cells, or the expression control sequences can be prokaryotic
promoter systems in vectors capable of transforming or transfecting
prokaryotic host cells. Once the vector has been incorporated into
the appropriate host, the host is maintained under conditions
suitable for high level expression of the introduced nucleotide
sequences and as desired the collection and purification of the
humanized light chains, heavy chains, light/heavy chain dimers or
intact antibodies, binding fragments or other immunoglobulin forms
may follow (Beychok, Cells of Immunoglobulin Synthesis, Academic
Press, New York, 1979, which is incorporated herein by
reference).
[0109] DNA sequences of human antibodies and particularly the
complementarity determining regions (CDRs) can be isolated in
accordance with procedures well known in the art. Preferably, the
human CDRs DNA sequences are isolated from immortalized B-cells as
described in International Patent Application Publication No. WO
1987/02671. CDRs useful in producing the antibodies of the present
invention may be similarly derived from DNA encoding monoclonal
antibodies capable of binding to the target molecule. Such
humanized antibodies may be generated using well-known methods in
any convenient mammalian source capable of producing antibodies,
including, but not limited to, mice, rats, camels, llamas, rabbits,
or other vertebrates. Suitable cells for constant region and
framework DNA sequences and host cells in which the antibodies are
expressed and secreted, can be obtained from a number of sources,
such as the American Type Culture Collection, Manassas, Va.
[0110] Another method of generating specific antibodies, or
antibody fragments, reactive against a DKK2 involves the screening
of expression libraries encoding immunoglobulin genes, or portions
thereof, expressed in bacteria with a DKK2 protein or peptide. For
example, complete Fab fragments, VH regions and Fv regions can be
expressed in bacteria using phage expression libraries. See for
example, Ward et al., Nature, 1989, 341: 544-546; Huse et al.,
Science, 1989, 246: 1275-1281; and McCafferty et al., Nature, 1990,
348: 552-554. Screening such libraries with, for example, a DKK2
peptide, can identify immunoglobulin fragments reactive with DKK2.
Alternatively, the SCID-hu mouse (available from Genpharm) can be
used to produce antibodies or fragments thereof.
[0111] In a further embodiment, antibodies or antibody fragments
can be isolated from antibody phage libraries generated using the
techniques described in McCafferty et al., Nature, 1990, 348:
552-554. Clackson et al., Nature, 1991, 352: 624-628 and Marks et
al., J Mol Biol, 1991, 222: 581-597 describe the isolation of
murine and human antibodies, respectively, using phage libraries.
Subsequent publications describe the production of high affinity
(nM range) human antibodies by chain shuffling (Marks et al.,
BioTechnology, 1992, 10: 779-783), as well as combinatorial
infection and in vivo recombination as a strategy for constructing
very large phage libraries (Waterhouse et al., Nuc. Acids. Res.,
1993, 21: 2265-2266). Thus, these techniques are viable
alternatives to traditional monoclonal antibody hybridoma
techniques for isolation of monoclonal antibodies.
[0112] The DNA also may be modified, for example, by substituting
the coding sequence for human heavy- and light-chain constant
domains in place of the homologous murine sequences (U.S. Pat. No.
4,816,567; Morrison, et al., Proc. Natl. Acad. Sci. USA, 1984, 81:
6851), or by covalently joining to the immunoglobulin coding
sequence all or part of the coding sequence for a
non-immunoglobulin polypeptide. Typically, such non-immunoglobulin
polypeptides are substituted for the constant domains of an
antibody, or they are substituted for the variable domains of one
antigen combining site of an antibody to create a chimeric bivalent
antibody having one antigen-combining site with specificity for a
first antigen and another antigen-combining site with specificity
for a different antigen.
[0113] Various techniques have been developed for the production of
functional antibody fragments. The antibody fragment may include a
variable region or antigen-binding region of the antibody.
Traditionally, these fragments were derived via proteolytic
digestion of intact antibodies (see, e.g., Morimoto et al., Journal
of Biochemical and Biophysical Methods, 1992, 24: 107-117 and
Brennan et al., Science, 1985, 229: 81). However, these fragments
can now be produced directly by recombinant host cells. For
example, the antibody fragments can be isolated from the antibody
phage libraries discussed above. Alternatively, Fab'-SH fragments
can be directly recovered from E. coli and chemically coupled to
form F (ab') 2 fragments (Carter et al., Bio/Technology, 1992, 10:
163-167). According to another approach, F (ab') 2 fragments can be
isolated directly from recombinant host cell culture. Other
techniques for the production of antibody fragments will be
apparent to the skilled practitioner. In other embodiments, the
antibody of choice is a single chain Fv fragment (scFv). See WO
93/16185; U.S. Pat. Nos. 5,571,894; and 5,587,458. The antibody
fragment may also be a "linear antibody", e.g., as described in
U.S. Pat. No. 5,641,870 for example. Such linear antibody fragments
may be monospecific or bispecific.
[0114] Antibody mimics or "non-antibody binding protein" use
non-immunoglobulin protein scaffolds, including adnectins, avimers,
single chain polypeptide binding molecules, and antibody-like
binding peptidomimetics by using non-immunoglobulin protein
scaffolds as alternative protein frameworks for the variable
regions of antibodies (U.S. Pat. Nos. 5,260,203; 5,770,380;
6,818,418 and 7,115,396). Other compounds have been developed that
target and bind to targets in a manner similar to antibodies.
Certain of these "antibody mimics" use non-immunoglobulin protein
scaffolds as alternative protein frameworks for the variable
regions of antibodies. A methodology for reducing antibodies into
smaller peptidomimetics, termed "antibody like binding
peptidomimetics" (ABiP) can be used, a methodology for reducing
antibodies into smaller peptidomimetics, can also be useful as an
alternative to antibodies (Murali et al. Cell Mol Biol., 2003,
49(2):209-216).
[0115] Fusion proteins that are single-chain polypeptides including
multiple domains termed "avimers" were developed from human
extracellular receptor domains by in vitro exon shuffling and phage
display and are a class of binding proteins somewhat similar to
antibodies in their affinities and specificities for various target
molecules (Silverman et al. Nat Biotechnol, 2005, 23: 1556-1561).
The resulting multidomain proteins can include multiple independent
binding domains that can exhibit improved affinity (in some cases
sub-nanomolar) and specificity compared with single-epitope binding
proteins. Additional details concerning methods of construction and
use of avimers are disclosed, for example, in US Pat. App. Pub.
Nos. 20040175756, 20050048512, 20050053973, 20050089932 and
20050221384.
[0116] In addition to non-immunoglobulin protein frameworks,
antibody properties have also been mimicked in compounds including,
but not limited to, RNA molecules and unnatural oligomers (e.g.,
protease inhibitors, benzodiazepines, purine derivatives and
beta-turn mimics) all of which are suitable for use with the
present invention. These are aimed to circumvent the limitations of
developing antibodies in animals by developing wholly in vitro
techniques for designing antibodies of tailored specificity.
[0117] As known in the art, aptamers are macromolecules composed of
nucleic acid that bind tightly to a specific molecular target.
Tuerk and Gold (Science, 1990, 249:505-510) discloses SELEX
(Systematic Evolution of Ligands by Exponential Enrichment) method
for selection of aptamers. In the SELEX method, a large library of
nucleic acid molecules (e.g., 1015 different molecules) is produced
and/or screened with the target molecule. Isolated aptamers can
then be further refined to eliminate any nucleotides that do not
contribute to target binding and/or aptamer structure (i.e.,
aptamers truncated to their core binding domain). See, e.g.,
Jayasena, 1999, Clin. Chem. 45:1628-1650 for review of aptamer
technology.
[0118] The term "neutralizing" in reference to an anti-DKK2
antibody of the invention or the phrase "antibody that neutralizes
DKK2 activity" is intended to refer to an antibody whose binding to
or contact with DKK2 results in inhibition of a cell proliferative
activity, metastasis of cancer, invasion of cancer cells or
migration of cancer cells, inhibition of Wnt signaling,
establishment of tumor-formation promoting microenvironment induced
by DKK2. Because the DKK2 is secreted to extracellular and
functions as an essential factor of proliferation, migration,
invasion and metastasis of cancer cells, some anti-DKK2 antibodies
may neutralize these activity. The neutralizing antibody in this
invention is especially useful in therapeutic applications: to
prevent or treat intractable diseases cancers, and cancer
metastasis. The neutralizing antibody in this invention can be
administered to a patient, or contacted with a cell for inhibiting
metastasis of a cancer characterized by the over-expression of
DKK2.
[0119] The antibody of the present invention can be assessed for
immunospecific binding by any method known in the art. The
immunoassays that can be used include but are not limited to
competitive and non-competitive assay systems using techniques such
as western blots, radioimmunoassays, ELISA (enzyme linked
immunosorbent assay), "sandwich" immunoassays, immunoprecipitation
assays, precipitin reactions, gel diffusion precipitin reactions,
immunodiffusion assays, agglutination assays, complement-fixation
assays, immunoradiometric assays, fluorescent immunoassays, protein
A immunoassays, to name but a few. Such assays are routine and well
known in the art (see, e.g., Current Protocols in Molecular
Biology, (Ausubel et al., eds.), Greene Publishing Associates and
Wiley-Interscience, New York, 2002).
[0120] Combination Therapies
[0121] The compounds identified in the methods described herein may
also be useful in the methods of the invention when combined with
at least one additional compound useful for treating cancer. The
additional compound may comprise a compound identified herein or a
compound, e.g., a commercially available compounds, known to treat,
prevent, or reduce the symptoms of cancer and/or metastasis.
[0122] In one aspect, the present invention contemplates that the
agents useful within the invention may be used in combination with
a therapeutic agent such as an anti-tumor agent, including but not
limited to a chemotherapeutic agent, immunotherapeutic agent, an
anti-cell proliferation agent or any combination thereof. For
example, any conventional chemotherapeutic agents of the following
non-limiting exemplary classes are included in the invention:
alkylating agents; nitrosoureas; antimetabolites; antitumor
antibiotics; plant alkyloids; taxanes; hormonal agents; and
miscellaneous agents.
[0123] Alkylating agents are so named because of their ability to
add alkyl groups to many electronegative groups under conditions
present in cells, thereby interfering with DNA replication to
prevent cancer cells from reproducing. Most alkylating agents are
cell cycle non-specific. In specific aspects, they stop tumor
growth by cross-linking guanine bases in DNA double-helix strands.
Non-limiting examples include busulfan, carboplatin, chlorambucil,
cisplatin, cyclophosphamide, dacarbazine, ifosfamide,
mechlorethamine hydrochloride, melphalan, procarbazine, thiotepa,
and uracil mustard.
[0124] Anti-metabolites prevent incorporation of bases into DNA
during the synthesis (S) phase of the cell cycle, prohibiting
normal development and division. Non-limiting examples of
antimetabolites include drugs such as 5-fluorouracil,
6-mercaptopurine, capecitabine, cytosine arabinoside, floxuridine,
fludarabine, gemcitabine, methotrexate, and thioguanine.
[0125] Antitumor antibiotics generally prevent cell division by
interfering with enzymes needed for cell division or by altering
the membranes that surround cells. Included in this class are the
anthracyclines, such as doxorubicin, which act to prevent cell
division by disrupting the structure of the DNA and terminate its
function. These agents are cell cycle non-specific. Non-limiting
examples of antitumor antibiotics include aclacinomycin,
actinomycin, anthramycin, azaserine, bleomycins, cactinomycin,
calicheamicin, carubicin, caminomycin, carzinophilin, chromomycin,
dactinomycin, daunorubicin, detorubicin,
6-diazo-5-oxo-L-norleucine, doxorubicin, epirubicin, esorubicin,
idarubicin, marcellomycin, mitomycins, mitoxantrone, mycophenolic
acid, nogalamycin, olivomycins, peplomycin, porfiromycin,
puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin,
tubercidin, ubenimex, zinostatin, zorubicin.
[0126] Plant alkaloids inhibit or stop mitosis or inhibit enzymes
that prevent cells from making proteins needed for cell growth.
Frequently used plant alkaloids include vinblastine, vincristine,
vindesine, and vinorelbine. However, the invention should not be
construed as being limited solely to these plant alkaloids.
[0127] The taxanes affect cell structures called microtubules that
are important in cellular functions. In normal cell growth,
microtubules are formed when a cell starts dividing, but once the
cell stops dividing, the microtubules are disassembled or
destroyed. Taxanes prohibit the microtubules from breaking down
such that the cancer cells become so clogged with microtubules that
they cannot grow and divide. Non-limiting exemplary taxanes include
paclitaxel and docetaxel.
[0128] Hormonal agents and hormone-like drugs are utilized for
certain types of cancer, including, for example, leukemia,
lymphoma, and multiple myeloma. They are often employed with other
types of chemotherapy drugs to enhance their effectiveness. Sex
hormones are used to alter the action or production of female or
male hormones and are used to slow the growth of breast, prostate,
and endometrial cancers. Inhibiting the production (aromatase
inhibitors) or action (tamoxifen) of these hormones can often be
used as an adjunct to therapy. Some other tumors are also hormone
dependent. Tamoxifen is a non-limiting example of a hormonal agent
that interferes with the activity of estrogen, which promotes the
growth of breast cancer cells.
[0129] Miscellaneous agents include chemotherapeutics such as
bleomycin, hydroxyurea, L-asparaginase, and procarbazine.
[0130] Other examples of chemotherapeutic agents include, but are
not limited to, the following and their pharmaceutically acceptable
salts, acids and derivatives: nitrogen mustards such as
chlorambucil, chlomaphazine, chlorophosphamide, estramustine,
ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride,
melphalan, novembichin, phenesterine, prednimustine, trofosfamide,
uracil mustard; nitrosoureas such as carmustine, chlorozotocin,
fotemustine, lomustine, nimustine, ranimustine; purine analogs such
as fludarabine, 6-mercaptopurine, thiamiprine, thioguanine;
pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine,
carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine,
floxuridine, 5-FU; androgens such as calusterone, dromostanolone
propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals
such as aminoglutethimide, mitotane, trilostane; folic acid
replenisher such as frolinic acid; aceglatone; aldophosphamide
glycoside; aminolevulinic acid; amsacrine; bestrabucil; bisantrene;
edatrexate; defofamine; demecolcine; diaziquone; eflornithine;
elliptinium acetate; etoglucid; gallium nitrate; hydroxyurea;
lentinan; lonidamine; mitoguazone; mitoxantrone; mopidamol;
nitracrine; pentostatin; phenamet; pirarubicin; podophyllinic acid;
2-ethylhydrazide; procarbazine; PSK@ razoxane; sizofuran;
spirogermanium; tenuazonic acid; triaziquone;
2,2',2''-trichlorotriethylamine; urethan; vindesine; dacarbazine;
mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine;
arabinoside ("Ara-C"); cyclophosphamide; thiotepa; taxoids, e.g.
paclitaxel (TAXOLO, Bristol-Myers Squibb Oncology, Princeton, N.J.)
and docetaxel (TAXOTERE, Rhone-Poulenc Rorer, Antony, France);
chlorambucil; gemcitabine; 6-thioguanine; mercaptopurine;
methotrexate; platinum analogs such as cisplatin and carboplatin;
vinblastine; platinum; etoposide (VP-16); ifosfamide; mitomycin C;
mitoxantrone; vincristine; vinorelbine; navelbine; novantrone;
teniposide; daunomycin; aminopterin; xeloda; ibandronate; CPT-11;
topoisomerase inhibitor RFS 2000; difluoromethylornithine (DMFO);
retinoic acid; esperamicins; and capecitabine.
[0131] An anti-cell proliferation agent can further be defined as
an apoptosis-inducing agent or a cytotoxic agent. The
apoptosis-inducing agent may be a granzyme, a Bcl-2 family member,
cytochrome C, a caspase, or a combination thereof. Exemplary
granzymes include granzyme A, granzyme B, granzyme C, granzyme D,
granzyme E, granzyme F, granzyme G, granzyme H, granzyme I,
granzyme J, granzyme K, granzyme L, granzyme M, granzyme N, or a
combination thereof. In other specific aspects, the Bcl-2 family
member is, for example, Bax, Bak, Bcl-Xs, Bad, Bid, Bik, Hrk, Bok,
or a combination thereof.
[0132] In additional aspects, the caspase is caspase-1, caspase-2,
caspase-3, caspase-4, caspase-5, caspase-6, caspase-7, caspase-8,
caspase-9, caspase-10, caspase-11, caspase-12, caspase-13,
caspase-14, or a combination thereof. In specific aspects, the
cytotoxic agent is TNF-.alpha., gelonin, Prodigiosin, a
ribosome-inhibiting protein (RIP), Pseudomonas exotoxin,
Clostridium difficile Toxin B, Helicobacter pylori VacA, Yersinia
enterocolitica YopT, Violacein, diethylenetriaminepentaacetic acid,
irofulven, Diptheria Toxin, mitogillin, ricin, botulinum toxin,
cholera toxin, saporin 6, or a combination thereof.
[0133] An immunotherapeutic agent may be, but is not limited to, an
interleukin-2 or other cytokine, an inhibitor of programmed cell
death protein 1 (PD-1) signaling such as a monoclonal antibody that
binds to PD-1, Ipilimumab. The immunotherapeutic agent can also
block cytotoxic T lymphocytes associated antigen A-4 (CTLA-4)
signaling and it can also relate to cancer vaccines and dendritic
cell-based therapies.
[0134] The immunotherapeutic agent can further be NK cells that are
activated and expanded by means of cytokine treatment or by
transferring exogenous cells by adoptive cell therapy and/or by
hematopoietic stem cell transplantation. NK cells suitable for
adoptive cell therapy can be derived from different sources,
including ex vivo expansion of autologous NK cells, unstimulated or
expanded allogeneic NK cells from peripheral blood, derived from
CD34+ hematopoietic progenitors from peripheral blood and umbilical
cord blood, and NK-cell lines. Genetically modified NK cells
expressing chimeric antigen receptors or cytokines are also
contemplated in this invention. Another immunotherapeutic agent
useful for this invention is an agent based on adoptive T cell
therapy (ACT) wherein tumor-infiltrating lymphocytes (TILs) are
administered to patients. The administered T cells can be
genetically engineered to express tumor-specific antigen receptors
such as chimeric antigen receptors (CARs), which recognize
cell-surface antigens in a non-major histocompatibility
(MHC)-restricted manner; or they can be traditional a.beta. TCRs,
which recognize epitopes of intracellular antigens presented by MEW
molecules.
[0135] Pharmaceutical Compositions and Formulations.
[0136] The invention envisions the use of a pharmaceutical
composition comprising a humanized anti-DKK2 antibody for use in
the methods of the invention.
[0137] Such a pharmaceutical composition is in a form suitable for
administration to a subject, or the pharmaceutical composition may
further comprise one or more pharmaceutically acceptable carriers,
one or more additional ingredients, or some combination of these.
The various components of the pharmaceutical composition may be
present in the form of a physiologically acceptable salt, such as
in combination with a physiologically acceptable cation or anion,
as is well known in the art.
[0138] In an embodiment, the pharmaceutical compositions useful for
practicing the method of the invention may be administered to
deliver a dose of between 1 ng/kg/day and 100 mg/kg/day. In another
embodiment, the pharmaceutical compositions useful for practicing
the invention may be administered to deliver a dose of between 1
ng/kg/day and 500 mg/kg/day.
[0139] The relative amounts of the active ingredient, the
pharmaceutically acceptable carrier, and any additional ingredients
in a pharmaceutical composition of the invention will vary,
depending upon the identity, size, and condition of the subject
treated and further depending upon the route by which the
composition is to be administered. By way of example, the
composition may comprise between 0.1% and 100% (w/w) active
ingredient.
[0140] Pharmaceutical compositions that are useful in the methods
of the invention may be suitably developed for inhalational, oral,
rectal, vaginal, parenteral, topical, transdermal, pulmonary,
intranasal, buccal, ophthalmic, intrathecal, intravenous or another
route of administration. Other contemplated formulations include
projected nanoparticles, liposomal preparations, resealed
erythrocytes containing the active ingredient, and
immunologically-based formulations. The route(s) of administration
is readily apparent to the skilled artisan and depends upon any
number of factors including the type and severity of the disease
being treated, the type and age of the veterinary or human patient
being treated, and the like.
[0141] The formulations of the pharmaceutical compositions
described herein may be prepared by any method known or hereafter
developed in the art of pharmacology. In general, such preparatory
methods include the step of bringing the active ingredient into
association with a carrier or one or more other accessory
ingredients, and then, if necessary or desirable, shaping or
packaging the product into a desired single- or multi-dose
unit.
[0142] As used herein, a "unit dose" is a discrete amount of the
pharmaceutical composition comprising a predetermined amount of the
active ingredient. The amount of the active ingredient is generally
equal to the dosage of the active ingredient that would be
administered to a subject or a convenient fraction of such a dosage
such as, for example, one-half or one-third of such a dosage. The
unit dosage form may be for a single daily dose or one of multiple
daily doses (e.g., about 1 to 4 or more times per day). When
multiple daily doses are used, the unit dosage form may be the same
or different for each dose.
[0143] Although the descriptions of pharmaceutical compositions
provided herein are principally directed to pharmaceutical
compositions suitable for ethical administration to humans, it is
understood by the skilled artisan that such compositions are
generally suitable for administration to animals of all sorts.
Modification of pharmaceutical compositions suitable for
administration to humans in order to render the compositions
suitable for administration to various animals is well understood,
and the ordinarily skilled veterinary pharmacologist can design and
perform such modification with merely ordinary, if any,
experimentation. Subjects to which administration of the
pharmaceutical compositions of the invention is contemplated
include, but are not limited to, humans and other primates, mammals
including commercially relevant mammals such as cattle, pigs,
horses, sheep, cats, and dogs.
[0144] In one embodiment, the compositions are formulated using one
or more pharmaceutically acceptable excipients or carriers. In one
embodiment, the pharmaceutical compositions comprise a
therapeutically effective amount of humanized anti-DKK2 antibody
and a pharmaceutically acceptable carrier. Pharmaceutically
acceptable carriers, which are useful, include, but are not limited
to, glycerol, water, saline, ethanol and other pharmaceutically
acceptable salt solutions such as phosphates and salts of organic
acids. Examples of these and other pharmaceutically acceptable
carriers are described in Remington's Pharmaceutical Sciences,
1991, Mack Publication Co., New Jersey.
[0145] The carrier may be a solvent or dispersion medium
containing, for example, water, ethanol, polyol (for example,
glycerol, propylene glycol, and liquid polyethylene glycol, and the
like), suitable mixtures thereof, and vegetable oils. The proper
fluidity may be maintained, for example, by the use of a coating
such as lecithin, by the maintenance of the required particle size
in the case of dispersion and by the use of surfactants. Prevention
of the action of microorganisms may be achieved by various
antibacterial and antifungal agents, for example, parabens,
chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In
many cases, it is preferable to include isotonic agents, for
example, sugars, sodium chloride, or polyalcohols such as mannitol
and sorbitol, in the composition. Prolonged absorption of the
injectable compositions may be brought about by including in the
composition an agent which delays absorption, for example, aluminum
monostearate or gelatin.
[0146] Formulations may be employed in admixtures with conventional
excipients, i.e., pharmaceutically acceptable organic or inorganic
carrier substances suitable for oral, parenteral, nasal,
intravenous, subcutaneous, enteral, or any other suitable mode of
administration, known to the art. The pharmaceutical preparations
may be sterilized and if desired mixed with auxiliary agents, e.g.,
lubricants, preservatives, stabilizers, wetting agents,
emulsifiers, salts for influencing osmotic pressure buffers,
coloring, flavoring and/or aromatic substances and the like. They
may also be combined where desired with other active agents, e.g.,
other analgesic agents.
[0147] The composition of the invention may comprise a preservative
from about 0.005% to 2.0% by total weight of the composition. The
preservative is used to prevent spoilage in the case of exposure to
contaminants in the environment. Examples of preservatives useful
in accordance with the invention included but are not limited to
those selected from the group consisting of benzyl alcohol, sorbic
acid, parabens, imidurea and combinations thereof. A particularly
preferred preservative is a combination of about 0.5% to 2.0%
benzyl alcohol and 0.05% to 0.5% sorbic acid.
[0148] The composition preferably includes an antioxidant and a
chelating agent which inhibit the degradation of the compound.
Preferred antioxidants for some compounds are BHT, BHA,
alpha-tocopherol and ascorbic acid in the preferred range of about
0.01% to 0.3% and more preferably BHT in the range of 0.03% to 0.1%
by weight by total weight of the composition. Preferably, the
chelating agent is present in an amount of from 0.01% to 0.5% by
weight by total weight of the composition. Particularly preferred
chelating agents include edetate salts (e.g. disodium edetate) and
citric acid in the weight range of about 0.01% to 0.20% and more
preferably in the range of 0.02% to 0.10% by weight by total weight
of the composition. The chelating agent is useful for chelating
metal ions in the composition which may be detrimental to the shelf
life of the formulation. While BHT and disodium edetate are the
particularly preferred antioxidant and chelating agent respectively
for some compounds, other suitable and equivalent antioxidants and
chelating agents may be substituted therefore as would be known to
those skilled in the art.
[0149] Administration/Dosing
[0150] The regimen of administration may affect what constitutes an
effective amount. For example, the therapeutic formulations may be
administered to the patient either prior to or after a surgical
intervention related to cancer, or shortly after the patient was
diagnosed with cancer. Further, several divided dosages, as well as
staggered dosages may be administered daily or sequentially, or the
dose may be continuously infused, or may be a bolus injection.
Further, the dosages of the therapeutic formulations may be
proportionally increased or decreased as indicated by the
exigencies of the therapeutic or prophylactic situation.
[0151] Administration of the compositions of the present invention
to a patient, preferably a mammal, more preferably a human, may be
carried out using known procedures, at dosages and for periods of
time effective to treat cancer in the patient. An effective amount
of the therapeutic compound necessary to achieve a therapeutic
effect may vary according to factors such as the activity of the
particular compound employed; the time of administration; the rate
of excretion of the compound; the duration of the treatment; other
drugs, compounds or materials used in combination with the
compound; the state of the disease or disorder, age, sex, weight,
condition, general health and prior medical history of the patient
being treated, and like factors well-known in the medical arts.
Dosage regimens may be adjusted to provide the optimum therapeutic
response. For example, several divided doses may be administered
daily or the dose may be proportionally reduced as indicated by the
exigencies of the therapeutic situation. A non-limiting example of
an effective dose range for a therapeutic compound of the invention
is from about 0.01 and 50 mg/kg of body weight/per day. One of
ordinary skill in the art would be able to study the relevant
factors and make the determination regarding the effective amount
of the therapeutic compound without undue experimentation.
[0152] The compound can be administered to an animal as frequently
as several times daily, or it may be administered less frequently,
such as once a day, once a week, once every two weeks, once a
month, or even less frequently, such as once every several months
or even once a year or less. It is understood that the amount of
compound dosed per day may be administered, in non-limiting
examples, every day, every other day, every 2 days, every 3 days,
every 4 days, or every 5 days. For example, with every other day
administration, a 5 mg per day dose may be initiated on Monday with
a first subsequent 5 mg per day dose administered on Wednesday, a
second subsequent 5 mg per day dose administered on Friday, and so
on. The frequency of the dose is readily apparent to the skilled
artisan and depends upon any number of factors, such as, but not
limited to, the type and severity of the disease being treated, and
the type and age of the animal. Actual dosage levels of the active
ingredients in the pharmaceutical compositions of this invention
may be varied so as to obtain an amount of the active ingredient
that is effective to achieve the desired therapeutic response for a
particular patient, composition, and mode of administration,
without being toxic to the patient. A medical doctor, e.g.,
physician or veterinarian, having ordinary skill in the art may
readily determine and prescribe the effective amount of the
pharmaceutical composition required. For example, the physician or
veterinarian could start doses of the compounds of the invention
employed in the pharmaceutical composition at levels lower than
that required in order to achieve the desired therapeutic effect
and gradually increase the dosage until the desired effect is
achieved.
[0153] In particular embodiments, it is especially advantageous to
formulate the compound in dosage unit form for ease of
administration and uniformity of dosage. Dosage unit form as used
herein refers to physically discrete units suited as unitary
dosages for the patients to be treated; each unit containing a
predetermined quantity of therapeutic compound calculated to
produce the desired therapeutic effect in association with the
required pharmaceutical vehicle. The dosage unit forms of the
invention are dictated by and directly dependent on (a) the unique
characteristics of the therapeutic compound and the particular
therapeutic effect to be achieved, and (b) the limitations inherent
in the art of compounding/formulating such a therapeutic compound
for the treatment of cancer in a patient.
[0154] Routes of Administration
[0155] One skilled in the art will recognize that although more
than one route can be used for administration, a particular route
can provide a more immediate and more effective reaction than
another route.
[0156] Routes of administration of any of the compositions of the
invention include inhalational, oral, nasal, rectal, parenteral,
sublingual, transdermal, transmucosal (e.g., sublingual, lingual,
(trans)buccal, (trans)urethral, vaginal (e.g., trans- and
perivaginally), (intra)nasal, and (trans)rectal), intravesical,
intrapulmonary, intraduodenal, intragastrical, intrathecal,
subcutaneous, intramuscular, intradermal, intra-arterial,
intravenous, intrabronchial, inhalation, and topical
administration. Suitable compositions and dosage forms include, for
example, tablets, capsules, caplets, pills, gel caps, troches,
dispersions, suspensions, solutions, syrups, granules, beads,
transdermal patches, gels, powders, pellets, magmas, lozenges,
creams, pastes, plasters, lotions, discs, suppositories, liquid
sprays for nasal or oral administration, dry powder or aerosolized
formulations for inhalation, compositions and formulations for
intravesical administration and the like. It should be understood
that the formulations and compositions that would be useful in the
present invention are not limited to the particular formulations
and compositions that are described herein.
[0157] Controlled Release Formulations and Drug Delivery
Systems
[0158] Controlled- or sustained-release formulations of a
pharmaceutical composition of the invention may be made using
conventional technology. In some cases, the dosage forms to be used
can be provided as slow or controlled-release of one or more active
ingredients therein using, for example, hydropropylmethyl
cellulose, other polymer matrices, gels, permeable membranes,
osmotic systems, multilayer coatings, microparticles, liposomes, or
microspheres or a combination thereof to provide the desired
release profile in varying proportions. Suitable controlled-release
formulations known to those of ordinary skill in the art, including
those described herein, can be readily selected for use with the
pharmaceutical compositions of the invention. Thus, single unit
dosage forms suitable for oral administration, such as tablets,
capsules, gelcaps, and caplets, which are adapted for
controlled-release are encompassed by the present invention.
[0159] Most controlled-release pharmaceutical products have a
common goal of improving drug therapy over that achieved by their
non-controlled counterparts. Ideally, the use of an optimally
designed controlled-release preparation in medical treatment is
characterized by a minimum of drug substance being employed to cure
or control the condition in a minimum amount of time. Advantages of
controlled-release formulations include extended activity of the
drug, reduced dosage frequency, and increased patient compliance.
In addition, controlled-release formulations can be used to affect
the time of onset of action or other characteristics, such as blood
level of the drug, and thus can affect the occurrence of side
effects.
[0160] Immune response stimulation.
[0161] In one embodiment, the invention comprises methods for
providing anti-tumor immunity and for stimulating T-cell mediated
immune response by administering the to the subject an effective
amount of a humanized anti-DKK2 antibody or fragment thereof with a
pharmaceutical acceptable carrier.
[0162] The activation T lymphocytes (T cells) and its use within
immunotherapy for the treatment of cancer and infectious diseases,
is well known in the art (Melief et al., Immunol. Rev., 1995,
145:167-177; Riddell et al., Annu. Rev. Immunol., 1995,
13:545-586). As disclosed in the current invention, elimination of
DKK2 leads to an activation of CD8+ cytotoxic T lymphocytes (CTL)
and suppression of tumors.
[0163] Markers for CTL activation could be, but are not limited to,
cytotoxins such as perforin, granzymes, and granulysin, cytokines,
IL-2, IL-4, CD25, CD54, CD69, CD38, CD45RO, CD49d, CD40L, CD137,
CD134. The measurement in a sample of level of at least one of
these markers can be used to assess CTL activation as presented
herein the Examples section. Sorting of T cells, or generally any
cells of the present invention, can be carried out using any of a
variety of commercially available cell sorters, including, but not
limited to, MoFlo sorter (DakoCytomation, Fort Collins, Colo.),
FACSAria.TM., FACSArray.TM. FACSVantage.TM., BD.TM. LSR II, and
FACSCalibur.TM. (BD Biosciences, San Jose, Calif.).
[0164] Diagnosis and Treatment
[0165] In one embodiment, the invention relates to a method of
diagnosing a cancer or a predisposition for developing a cancer or
a metastasis in a subject. The method comprises determining the
expression level of DKK2 gene in a biological sample from the
subject, wherein an increase in the expression level of DKK2 as
compared with a normal control level of DKK2 expression is an
indication that the subject has cancer or has a predisposition for
developing a cancer or metastasis. A humanized anti-DKK2 antibody,
as disclosed herein, is used in the method of the invention to
determine the expression level of DKK2 in the biological
sample.
[0166] In another embodiment, the invention relates to a method for
determining the efficacy of immunotherapy treatment for treating
cancer in a subject in need thereof. The method comprises
determining the expression level of DKK2 gene in a biological
sample from the subject, wherein an increase in the expression
level of DKK2 as compared with the expression level of DKK2 in a
normal control is an indication that immunotherapy treatment will
effective. In some aspects of the invention, treatment of cancer
may include the treatment of solid tumors or the treatment of
metastasis. Metastasis is a form of cancer wherein the transformed
or malignant cells are traveling and spreading the cancer from one
site to another. Such cancers include cancers of the skin, breast,
brain, cervix, testes, etc. More particularly, cancers may include,
but are not limited to the following organs or systems: cardiac,
lung, gastrointestinal, genitourinary tract, liver, bone, nervous
system, gynecological, hematologic, skin, and adrenal glands. More
particularly, the methods herein can be used for treating gliomas
(Schwannoma, glioblastoma, astrocytoma), neuroblastoma,
pheochromocytoma, paraganlioma, meningioma, adrenalcortical
carcinoma, kidney cancer, vascular cancer of various types,
osteoblastic osteocarcinoma, prostate cancer, ovarian cancer,
uterine leiomyomas, salivary gland cancer, choroid plexus
carcinoma, mammary cancer, pancreatic cancer, colon cancer, and
megakaryoblastic leukemia. Skin cancer includes malignant melanoma,
basal cell carcinoma, squamous cell carcinoma, Karposi's sarcoma,
moles dysplastic nevi, lipoma, angioma, dermatofibroma, keloids,
and psoriasis. A humanized anti-DKK2 antibody, as disclosed herein,
is used in the method of the invention to determine the expression
level of DKK2 in the biological sample.
[0167] Control Standard Amount of Expression of DKK2
[0168] The method of the invention includes comparing a measured
amount of expression of DKK2 in a biological sample from a subject
to a control amount (i.e. the reference) of expression of DKK2.
[0169] In one embodiment, the standard control level of expression
of DKK2 may be obtained by measuring the expression level of DKK2
in a healthy subject. Preferably, the healthy subject is a subject
of similar age, gender and race and has never been diagnosed with
any type of sever disease particularly any type of cancer.
[0170] In another embodiment, the control amount of expression of
DKK2 is a value for expression of DKK2 that is accepted in the art.
This reference value can be baseline value calculated for a group
of subjects based on the average or mean values of DKK2 expression
by applying standard statistically methods
[0171] In one embodiment, the expression level is determined by a
method selected from the group consisting of detecting mRNA of the
gene, detecting a protein encoded by the gene, and detecting a
biological activity of the protein encoded by the gene.
[0172] In certain aspects of the present invention, the expression
level of DKK2 is determined in a sample from a subject. The sample
preferably includes tumor cells, any fluid from the surrounding of
tumor cells (i.e., leukemic blood, tumor tissue, etc. . . . ) or
any fluid that is in physiological contact or proximity with the
tumor, or any other body fluid in addition to those recited herein
should also be considered to be included in the invention. A
humanized anti-DKK2 antibody, as disclosed herein, is used in the
method of the invention to determine the expression level of DKK2
in the biological sample.
[0173] Methods of Measurement
[0174] Any method known to those in the art can be employed for
determining the level of DKK2 expression. For example, a microarray
can be used. Microarrays are known in the art and consist of a
surface to which probes that correspond in sequence to gene
products (e.g. mRNAs, polypeptides, fragments thereof etc.) can be
specifically hybridized or bound to a known position. To detect at
least one gene of interest, a hybridization sample is formed by
contacting the test sample with at least one nucleic acid probe.
The nucleic acid probe can be, for example, a full-length nucleic
acid molecule, or a portion thereof, such as an oligonucleotide of
at least 10, 15, or 20 nucleotides in length and sufficient to
specifically hybridize under stringent conditions to the
appropriate target. In the instance of the present invention, in
some embodiments, the probe for detecting DKK2 is a labeled nucleic
acid probe capable of hybridizing to a human DKK2 mRNA or a
fragment thereof. In other embodiments, the sequence of the nucleic
acid probe is a nucleic acid sequence encoding one or a fragment of
the amino acid sequences selected from the group consisting of SEQ
ID NOs: 1, 2 and 3 (FIGS. 16A-16B). The hybridization sample is
maintained under conditions which are sufficient to allow specific
hybridization of the nucleic acid probe to a target of interest.
Specific hybridization can be performed under high stringency
conditions or moderate stringency conditions, as appropriate. In a
preferred embodiment, the hybridization conditions for specific
hybridization are high stringency. Specific hybridization, if
present, is then detected using standard methods. If specific
hybridization occurs between the nucleic acid probe and a gene in
the test sample, the sequence that is present in the nucleic acid
probe is also present in the mRNA of the subject. More than one
nucleic acid probe can also be used. Hybridization intensity data
detected by the scanner are automatically acquired and processed by
the Affymetrix Microarray Suite (MASS) software. Raw data is
normalized to expression levels using a target intensity of 150. An
alternate method to measure mRNA expression profiles of a small
number of different genes is by e.g. either classical TaqMan.RTM.
Gene Expression Assays or TaqMan.RTM. Low Density Array--micro
fluidic cards (Applied Biosystems). Particularly, this invention
preferably utilizes a qPCR system. Non-limiting examples include
commercial kits such as the PrimePCRPathways.RTM. commercially
available from Bio-rad (Berkley, Calif.).
[0175] The transcriptional state of a sample, particularly mRNAs,
may also be measured by other nucleic acid expression technologies
known in the art. mRNA can be isolated from the sample using any
method known to those in the art. Non-limiting examples include
commercial kits, such as the RNeasy.RTM. commercially available
from Qiagen (Netherlands) or the Mini Kit the TRI Reagent.RTM.
commercially available from Molecular Research Center, Inc.
(Cincinnati, Ohio), can be used to isolate RNA. Generally, the
isolated mRNA may be amplified using methods known in the art.
Amplification systems utilizing, for example, PCR or RT-PCR
methodologies are known to those skilled in the art. For a general
overview of amplification technology, see, for example, Dieffenbach
et al., PCR Primer: A Laboratory Manual, Cold Spring Harbor
Laboratory Press, New York (1995).
[0176] Another accurate method for profiling mRNA expression can
the use of Next Generation Sequencing (NGS) including first,
second, third as well as subsequent Next Generations Sequencing
technologies.
[0177] In other aspects of the present invention, determining the
amount or detecting the biological activity of a peptide,
polypeptide can be achieved by all known means in the art for
determining the amount of a peptide or polypeptide in a sample.
These means comprise immunoassay devices and methods which may
utilize labeled molecules in various sandwich, competition, or
other assay formats. Such assays will develop a signal which is
indicative for the presence or absence of the peptide or
polypeptide. Moreover, the signal strength can, preferably, be
correlated directly or indirectly (e.g. reverse-proportional) to
the amount of polypeptide present in a sample. Further suitable
methods comprise measuring a physical or chemical property specific
for the peptide or polypeptide such as its precise molecular mass
or NMR spectrum. Said methods comprise, preferably, biosensors,
optical devices coupled to immunoassays, biochips, analytical
devices such as mass-spectrometers, NMR-analyzers, or
chromatography devices. Further, methods include micro-plate
ELISA-based methods, fully-automated or robotic immunoassays
(available for example on Elecsys.TM. analyzers), CBA (an enzymatic
Cobalt Binding Assay, available for example on Roche-Hitachi.TM.
analyzers), and latex agglutination assays (available for example
on Roche-Hitachi.TM. analyzers).
[0178] Kit
[0179] The invention includes a set of preferred antibodies, either
labeled (e.g., fluorescer, quencher, etc.) or unlabeled, that are
useful for the detection of at least DKK2.
[0180] In certain embodiments, a kit is provided. Commercially
available kits for use in these methods are, in view of this
specification, known to those of skill in the art. In general, kits
will comprise a detection reagent that is suitable for detecting
the presence of a polypeptide or nucleic acid, or mRNA of
interest.
[0181] In another embodiment, there is a panel of probe sets or
antibodies. In some embodiments, the panel of antibodies comprises
a humanized anti-DKK2 antibody targeting a DKK2 epitope comprising
at least one of the amino acid sequences selected from the group
consisting of SEQ ID NOs: 4 and 5 (FIG. 18). In some embodiments,
the panel of probe sets is designed to detect the level of DKK2 and
provide information about cancer diagnosis or the predisposition of
developing a cancer or a metastasis. Probe sets are particularly
useful because they are smaller and cheaper than probe sets that
are intended to detect as many peptides as possible in a particular
genome. In the present invention, the probe sets are targeted at
the detection of polypeptides that are informative about cancer
genes. Probe sets may also comprise a large or small number of
probes that detect peptides that are not informative about cancer.
Such probes are useful as controls and for normalization (e.g.,
spiked-in markers). Probe sets may be a dry mixture or a mixture in
solution. In some embodiments, probe sets can be affixed to a solid
substrate to form an array of probes. The probes may be antibodies,
or nucleic acids (e.g., DNA, RNA, chemically modified forms of DNA
and RNA), LNAs (Locked nucleic acids), or PNAs (Peptide nucleic
acids), or any other polymeric compound capable of specifically
interacting with the peptides or nucleic acid sequences of
interest.
[0182] It is contemplated that kits may be designed for isolating
and/or detecting peptides (e.g. DKK2, know cancer markers, immune
activators or apoptotic proteins) or nucleic acid sequences in
essentially any sample (e.g., leukemic blood, tumor cells, tumor
tissue, etc.), and a wide variety of reagents and methods are, in
view of this specification, known in the art.
EXAMPLES
[0183] The invention is now described with reference to the
following Examples. These Examples are provided for the purpose of
illustration only and the invention should in no way be construed
as being limited to these Examples, but rather should be construed
to encompass any and all variations which become evident as a
result of the teaching provided herein.
[0184] Without further description, it is believed that one of
ordinary skill in the art can, using the preceding description and
the following illustrative examples, make and utilize the compounds
of the present invention and practice the claimed methods. The
following working examples therefore, specifically point out the
preferred embodiments of the present invention, and are not to be
construed as limiting in any way the remainder of the
disclosure.
Example 1: DKK2 is Expressed in a Wide Range of Solid Tumors
[0185] Analysis of publically available gene expression databases
revealed that DKK2 is upregulated in many of the gastric-intestinal
cancers, including rectal adenocarcinoma, colorectal carcinoma,
gastric adenocarcinoma, and pancreatic ductal adenocarcinoma (FIG.
1). Immunohistostaining using anti-DKK2 antibody also revealed that
DKK2 protein is upregulated in tumor samples from the colon,
rectum, kidney, lung and stomach, and detected in tumor samples
from the liver, breast, cervix and ovary (FIG. 2). These data
suggest that DKK2 can be a relevant therapeutic target for treating
human cancers.
Example 2: Genetic DKK2 Deletion Leads to Reduced Tumor Burden in
APC.sup.Min/+ Mice
[0186] APC (min) (also known as, APC.sup.Min/+ mice) and APC(min);
DKK2.sup.-/- mice were housed in a specific pathogen free vivarium.
In the absence of DKK2, tumor progression was significantly reduced
(FIG. 3 and FIG. 4). In accordance, tumor induced abnormalities
such as splenomegaly, thymic atrophy and lymphopenia (You, S., et
al., Int J Exp Pathol, 2006. 87(3): p. 227-36) were significantly
lower in APCKO mice. This tumor reduction phenomenon was seen in
groups of male and female mice on both high and low fat diets with
consistent results. Together, these data strongly suggest that in
the absence of DKK2, colon cancer progression is significantly
lower.
Example 3: Generation of Anti-DKK2 Antibodies
[0187] DKK2 is secreted and is a suitable candidate to be targeted
with an antibody (Ab) to reduce tumor burden. While DKK2 is
important for eyelid development (Gage et al., Dev Biol, 2008.
317(1): p. 310-24), it is not known to have a vital function in
adult mice. Two clones of mAb (5F8 and 1A10) were developed with
high specificity for DKK2, which neutralize DKK2 and inhibit its
Wnt antagonist functions (FIG. 5). Humanized antibodies carrying
the same CDRs of 5F8 were generated, and two of them showed similar
affinities for the DKK2 protein (FIG. 15).
Example 4: Targeting DKK2 in a Graft Mouse Model of Colon Cancer
Cells Showed that DKK2 is an Important Player for the Regulation of
Tumor Behavior and Microenvironment
[0188] MC38 cells, which were derived from mouse colon carcinoma in
a C57BL mouse, progress very fast when grafted to immune-competent
WT C57BL mice. Thus, this Xenograft model serves as a good
alternative to aggressive advanced tumor models, which can be used
to test the therapeutic potential of the anti-DKK2 Abs for treating
advanced cancers. In one study, C57BL mice (n=5 per group) were
grafted with MC38 cells. Six days later, the mice were treated via
the intraperitoneal (IP) route with mouse IgG or mAb 5F8 at 8 mg/kg
and mAb 5F8 showed a significant inhibition tumor growth (FIG. 9).
Immunostaining of tumor sections revealed that mAb 5F8 increases
tumor cell apoptosis and Granzyme B-positive cells (FIG. 10).
Importantly, flow cytometry analysis of leukocytes infiltrated into
these grafted tumors showed no differences in the number of CD45,
NK, CD8.sup.+, myeloid cells or CD4 but YAL008-1-5F8 treatment
resulted in significant increases in Granzyme B-positive
CD45-positive leukocytes including Granzyme B positive NK and
CD8.sup.+ cells (FIG. 11). These results suggest a mechanism that
involves the regulation of effector immune cells in DKK2
neutralization-mediated suppression of tumor progression.
Example 5: DKK2 Antibody Suppresses Lung Tumor Formation in an
Allograft Model
[0189] Mouse LLC lung cancer cells were grafted to C57BL mice and
treated with anti-DKK2 antibody (YAL008-1-5F8). This antibody
suppressed tumor formation (FIG. 7) and extended the survival of
tumor-bearing mice (FIG. 8).
Example 6: Effect of DKK2 and Wnt on NK Cell Activation
[0190] Human NK cell line NK-92 and primary mouse NK cells from
spleens and MC38-grafted tumors were tested for their expression of
Granzyme and cytotoxic activity in the presence or absence of
recombinant proteins of DKK2, Wnt3a, Wnt5a and DKK1, and in the
presence or absence of Wnt inhibitors (including LGK-974) and GSK
inhibitors (including CHIR 99021). In this manner, the regulation
of NK cell activation by DKK2 and Wnt was assessed. Experimental
results showed that recombinant DKK2 and Wnt5a inhibited Granzyme B
expression in human NK92 cells (FIG. 17), suggesting that DKK2 may
be directly involved in the inhibition of immune effector
cells.
Example 7: Anti-DKK2 Antibodies Inhibit Tumor Formation in an
Immune-Dependent Manner
[0191] When MC38 cells were grafted to immunodeficient NSG mice,
which lack mature B and T lymphocytes, myeloid cells, and NK cells,
neither mAb 5F8 nor humanized 5F8 showed any suppressive effect on
tumor growth (FIG. 14). These results indicate DKK2 neutralization
inhibit tumor formation depending on the presence of host
immunity.
Example 8: Anti-DKK2 Antibody Optimally Suppresses Tumor Formation
when Associated with PD-1 Antibody
[0192] C57BL mice (n=5 per group) were grafted with LLC or MC38
cells. Days later, the mice were treated via the intraperitoneal
(IP) route with mouse IgG, an anti-DKK2 antibody (5F8) and/or
anti-mouse PD-1 antibody at 16 mg (8 mg per antibody)/kg. The
effect of mAb 5F8 on tumors formation was compared with a PD-1
antibody (Cancer Res. 2005 Feb. 1; 65(3):1089-96). In the LLC
allograft lung tumor model, mAb 5F8 had a similar effect on tumor
retardation as did PD-1 antibody, and the combination of mAb 5F8
and PD-1 antibody exhibited a greater suppression of tumor
progression than with PD-1 antibody alone (FIG. 7); 5F8 and the
combination of 5F8 and PD-1 antibody exhibited increased survival
compared to the use of PD-1 antibody alone (FIG. 8). FIG. 9
illustrates the comparative effect of mAb 5F8 on tumor formation
when administered alone or in combination with other antibodies in
the MC38 colon cancer model. In this MC38 model, PD-1 antibody did
not exhibit a significant effect on tumor formation.
Example 9: Humanized Anti-DKK2 Antibody can Significantly Inhibit
Tumor Growth
[0193] Humanized anti-DKK2 antibodies 5F8-HXT1-V1 and 5F8-HXT1-V2,
were prepared and shown to bind with a very high affinity to human
DKK2 protein (FIG. 15). Both antibodies showed a significant
inhibition of tumor growth in an allograft model (MC38 cells) (FIG.
12). FIG. 13 demonstrated that 5F5-HXT1-V2 treatment increased
Granzyme B-positive immune cells, including CD8 positive
lymphocytes and NK1.1 positive neutral killer cells.
[0194] The disclosures of each and every patent, patent
application, and publication cited herein are hereby incorporated
herein by reference in their entirety.
[0195] While this invention has been disclosed with reference to
specific embodiments, it is apparent that other embodiments and
variations of this invention may be devised by others skilled in
the art without departing from the true spirit and scope of the
invention. The appended claims are intended to be construed to
include all such embodiments and equivalent variations.
Sequence CWU 1
1
51452PRTArtificial SequenceArtificially synthesized humanized
antibody 1Gln Val Gln Val Val Gln Ser Gly Ala Glu Val Lys Lys Pro
Gly Ala1 5 10 15Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Ser Phe
Thr Asn Tyr 20 25 30Trp Met Asn Trp Val Arg Gln Ala Pro Gly Gln Gly
Leu Glu Trp Met 35 40 45Gly Met Ile His Pro Ser Asp Ser Glu Thr Arg
Leu Asn Gln Lys Phe 50 55 60Gln Gly Arg Val Thr Leu Thr Val Asp Lys
Ser Ser Ser Thr Ala Tyr65 70 75 80Met Glu Leu Ser Ser Leu Arg Ser
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95Ala Arg Glu Gly Arg Leu Gly
Leu Arg Ser Tyr Ala Met Asp Tyr Trp 100 105 110Gly Gln Gly Thr Leu
Val Thr Val Ser Ser Ala Ser Thr Lys Gly Pro 115 120 125Ser Val Phe
Pro Leu Ala Pro Ser Ser Lys Ser Thr Ser Gly Gly Thr 130 135 140Ala
Ala Leu Gly Cys Leu Val Lys Asp Tyr Phe Pro Glu Pro Val Thr145 150
155 160Val Ser Trp Asn Ser Gly Ala Leu Thr Ser Gly Val His Thr Phe
Pro 165 170 175Ala Val Leu Gln Ser Ser Gly Leu Tyr Ser Leu Ser Ser
Val Val Thr 180 185 190Val Pro Ser Ser Ser Leu Gly Thr Gln Thr Tyr
Ile Cys Asn Val Asn 195 200 205His Lys Pro Ser Asn Thr Lys Val Asp
Lys Arg Val Glu Pro Lys Ser 210 215 220Cys Asp Lys Thr His Thr Cys
Pro Pro Cys Pro Ala Pro Glu Leu Leu225 230 235 240Gly Gly Pro Ser
Val Phe Leu Phe Pro Pro Lys Pro Lys Asp Thr Leu 245 250 255Met Ile
Ser Arg Thr Pro Glu Val Thr Cys Val Val Val Asp Val Ser 260 265
270His Glu Asp Pro Glu Val Lys Phe Asn Trp Tyr Val Asp Gly Val Glu
275 280 285Val His Asn Ala Lys Thr Lys Pro Arg Glu Glu Gln Tyr Asn
Ser Thr 290 295 300Tyr Arg Val Val Ser Val Leu Thr Val Leu His Gln
Asp Trp Leu Asn305 310 315 320Gly Lys Glu Tyr Lys Cys Lys Val Ser
Asn Lys Ala Leu Pro Ala Pro 325 330 335Ile Glu Lys Thr Ile Ser Lys
Ala Lys Gly Gln Pro Arg Glu Pro Gln 340 345 350Val Tyr Thr Leu Pro
Pro Ser Arg Glu Glu Met Thr Lys Asn Gln Val 355 360 365Ser Leu Thr
Cys Leu Val Lys Gly Phe Tyr Pro Ser Asp Ile Ala Val 370 375 380Glu
Trp Glu Ser Asn Gly Gln Pro Glu Asn Asn Tyr Lys Thr Thr Pro385 390
395 400Pro Val Leu Asp Ser Asp Gly Ser Phe Phe Leu Tyr Ser Lys Leu
Thr 405 410 415Val Asp Lys Ser Arg Trp Gln Gln Gly Asn Val Phe Ser
Cys Ser Val 420 425 430Met His Glu Ala Leu His Asn His Tyr Thr Gln
Lys Ser Leu Ser Leu 435 440 445Ser Pro Gly Lys 4502220PRTArtificial
SequenceArtificially synthesized humanized antibody 2Asp Ile Val
Met Thr Gln Ser Pro Asp Ser Leu Ala Val Ser Leu Gly1 5 10 15Glu Arg
Ala Thr Ile Asn Cys Lys Ser Ser Gln Ser Leu Leu Asn Ser 20 25 30Ser
Asn Gln Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly Gln 35 40
45Pro Pro Lys Leu Leu Val Tyr Phe Ala Ser Thr Arg Glu Ser Gly Val
50 55 60Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu
Thr65 70 75 80Ile Ser Ser Leu Gln Ala Glu Asp Val Ala Val Tyr Phe
Cys Gln Gln 85 90 95His Tyr Ile Thr Pro Leu Thr Phe Gly Gly Gly Thr
Lys Val Glu Ile 100 105 110Lys Arg Thr Val Ala Ala Pro Ser Val Phe
Ile Phe Pro Pro Ser Asp 115 120 125Glu Gln Leu Lys Ser Gly Thr Ala
Ser Val Val Cys Leu Leu Asn Asn 130 135 140Phe Tyr Pro Arg Glu Ala
Lys Val Gln Trp Lys Val Asp Asn Ala Leu145 150 155 160Gln Ser Gly
Asn Ser Gln Glu Ser Val Thr Glu Gln Asp Ser Lys Asp 165 170 175Ser
Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys Ala Asp Tyr 180 185
190Glu Lys His Lys Val Tyr Ala Cys Glu Val Thr His Gln Gly Leu Ser
195 200 205Ser Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 210 215
2203452PRTArtificial SequenceArtificially synthesized humanized
antibody 3Gln Val Gln Leu Val Gln Ser Gly Ser Glu Leu Lys Lys Pro
Gly Ala1 5 10 15Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe
Thr Asn Tyr 20 25 30Trp Met Asn Trp Val Arg Gln Ala Pro Gly Gln Gly
Leu Glu Trp Met 35 40 45Gly Met Ile His Pro Ser Asp Ser Glu Thr Arg
Leu Asn Gln Lys Phe 50 55 60Lys Asp Arg Val Thr Ile Thr Val Asp Lys
Ser Thr Ser Thr Ala Tyr65 70 75 80Met Glu Leu Ser Ser Leu Arg Ser
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95Ala Arg Glu Gly Arg Leu Gly
Leu Arg Ser Tyr Ala Met Asp Tyr Trp 100 105 110Gly Gln Gly Thr Leu
Val Thr Val Ser Ser Ala Ser Thr Lys Gly Pro 115 120 125Ser Val Phe
Pro Leu Ala Pro Ser Ser Lys Ser Thr Ser Gly Gly Thr 130 135 140Ala
Ala Leu Gly Cys Leu Val Lys Asp Tyr Phe Pro Glu Pro Val Thr145 150
155 160Val Ser Trp Asn Ser Gly Ala Leu Thr Ser Gly Val His Thr Phe
Pro 165 170 175Ala Val Leu Gln Ser Ser Gly Leu Tyr Ser Leu Ser Ser
Val Val Thr 180 185 190Val Pro Ser Ser Ser Leu Gly Thr Gln Thr Tyr
Ile Cys Asn Val Asn 195 200 205His Lys Pro Ser Asn Thr Lys Val Asp
Lys Arg Val Glu Pro Lys Ser 210 215 220Cys Asp Lys Thr His Thr Cys
Pro Pro Cys Pro Ala Pro Glu Leu Leu225 230 235 240Gly Gly Pro Ser
Val Phe Leu Phe Pro Pro Lys Pro Lys Asp Thr Leu 245 250 255Met Ile
Ser Arg Thr Pro Glu Val Thr Cys Val Val Val Asp Val Ser 260 265
270His Glu Asp Pro Glu Val Lys Phe Asn Trp Tyr Val Asp Gly Val Glu
275 280 285Val His Asn Ala Lys Thr Lys Pro Arg Glu Glu Gln Tyr Asn
Ser Thr 290 295 300Tyr Arg Val Val Ser Val Leu Thr Val Leu His Gln
Asp Trp Leu Asn305 310 315 320Gly Lys Glu Tyr Lys Cys Lys Val Ser
Asn Lys Ala Leu Pro Ala Pro 325 330 335Ile Glu Lys Thr Ile Ser Lys
Ala Lys Gly Gln Pro Arg Glu Pro Gln 340 345 350Val Tyr Thr Leu Pro
Pro Ser Arg Glu Glu Met Thr Lys Asn Gln Val 355 360 365Ser Leu Thr
Cys Leu Val Lys Gly Phe Tyr Pro Ser Asp Ile Ala Val 370 375 380Glu
Trp Glu Ser Asn Gly Gln Pro Glu Asn Asn Tyr Lys Thr Thr Pro385 390
395 400Pro Val Leu Asp Ser Asp Gly Ser Phe Phe Leu Tyr Ser Lys Leu
Thr 405 410 415Val Asp Lys Ser Arg Trp Gln Gln Gly Asn Val Phe Ser
Cys Ser Val 420 425 430Met His Glu Ala Leu His Asn His Tyr Thr Gln
Lys Ser Leu Ser Leu 435 440 445Ser Pro Gly Lys 4504259PRTHomo
sapiens 4Met Ala Ala Leu Met Arg Ser Lys Asp Ser Ser Cys Cys Leu
Leu Leu1 5 10 15Leu Ala Ala Val Leu Met Val Glu Ser Ser Gln Ile Gly
Ser Ser Arg 20 25 30Ala Lys Leu Asn Ser Ile Lys Ser Ser Leu Gly Gly
Glu Thr Pro Gly 35 40 45Gln Ala Ala Asn Arg Ser Ala Gly Met Tyr Gln
Gly Leu Ala Phe Gly 50 55 60Gly Ser Lys Lys Gly Lys Asn Leu Gly Gln
Ala Tyr Pro Cys Ser Ser65 70 75 80Asp Lys Glu Cys Glu Val Gly Arg
Tyr Cys His Ser Pro His Gln Gly 85 90 95Ser Ser Ala Cys Met Val Cys
Arg Arg Lys Lys Lys Arg Cys His Arg 100 105 110Asp Gly Met Cys Cys
Pro Ser Thr Arg Cys Asn Asn Gly Ile Cys Ile 115 120 125Pro Val Thr
Glu Ser Ile Leu Thr Pro His Ile Pro Ala Leu Asp Gly 130 135 140Thr
Arg His Arg Asp Arg Asn His Gly His Tyr Ser Asn His Asp Leu145 150
155 160Gly Trp Gln Asn Leu Gly Arg Pro His Thr Lys Met Ser His Ile
Lys 165 170 175Gly His Glu Gly Asp Pro Cys Leu Arg Ser Ser Asp Cys
Ile Glu Gly 180 185 190Phe Cys Cys Ala Arg His Phe Trp Thr Lys Ile
Cys Lys Pro Val Leu 195 200 205His Gln Gly Glu Val Cys Thr Lys Gln
Arg Lys Lys Gly Ser His Gly 210 215 220Leu Glu Ile Phe Gln Arg Cys
Asp Cys Ala Lys Gly Leu Ser Cys Lys225 230 235 240Val Trp Lys Asp
Ala Thr Tyr Ser Ser Lys Ala Arg Leu His Val Cys 245 250 255Gln Lys
Ile515PRTArtificial SequenceArtificially synthesized humanized
antibody epitope 5Lys Leu Asn Ser Ile Lys Ser Ser Leu Gly Gly Glu
Thr Pro Gly1 5 10 15
* * * * *