U.S. patent application number 17/542358 was filed with the patent office on 2022-03-31 for papd5 and papd7 inhibitors for treating a hepatitis b infection.
This patent application is currently assigned to HOFFMANN-LA ROCHE INC.. The applicant listed for this patent is HOFFMANN-LA ROCHE INC.. Invention is credited to Xingchun HAN, Hassan JAVANBAKHT, Henrik MUELLER, Yongguang WANG, Song YANG.
Application Number | 20220096527 17/542358 |
Document ID | / |
Family ID | 1000006013478 |
Filed Date | 2022-03-31 |
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United States Patent
Application |
20220096527 |
Kind Code |
A1 |
HAN; Xingchun ; et
al. |
March 31, 2022 |
PAPD5 AND PAPD7 INHIBITORS FOR TREATING A HEPATITIS B INFECTION
Abstract
The present invention relates to a method for identifying a
compound that prevents, ameliorates and/or inhibits hepatitis B
virus (HBV) infections. The compound (i) reduces the expression
and/or activity of PAP associated domain containing 5 (PAPD5)
and/or PAP associated domain containing 7 (PAPD7); and/or (ii)
binds to PAPD5 and/or PAPD7 and inhibits 5 propagation of HBV; and
is identified as a compound that prevents, ameliorates and/or
inhibits HBV infections. An inhibitor of PAPD5 and/or PAPD7 for use
in treating and/or preventing HBV infections; as well as a combined
preparation comprising an inhibitor of PAPD5 and an inhibitor of
PAPD7 for simultaneous or sequential use in the treatment or
prevention of HBV infections is also provided. The present
invention includes a 10-pharmaceutical composition for use in
treatment and/or prevention of HBV infections, and a method for
monitoring therapeutic success during treatment of HBV
infections.
Inventors: |
HAN; Xingchun; (Shanghai,
CN) ; JAVANBAKHT; Hassan; (San Francisco, CA)
; MUELLER; Henrik; (Basel, CH) ; WANG;
Yongguang; (Shanghai, CN) ; YANG; Song;
(Shanghai, CN) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
HOFFMANN-LA ROCHE INC. |
Little Falls |
NJ |
US |
|
|
Assignee: |
HOFFMANN-LA ROCHE INC.
Little Falls
NJ
|
Family ID: |
1000006013478 |
Appl. No.: |
17/542358 |
Filed: |
December 3, 2021 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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16310765 |
Dec 17, 2018 |
11191775 |
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PCT/EP2017/064981 |
Jun 19, 2017 |
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17542358 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C12N 15/113 20130101;
C07K 16/40 20130101; A61K 31/519 20130101; C12Q 1/6883 20130101;
C12N 15/1137 20130101; C12N 2310/14 20130101; A61P 31/20 20180101;
C07K 2317/732 20130101; A61P 31/14 20180101; A61K 31/7125 20130101;
C12Q 1/706 20130101; A61K 31/4745 20130101 |
International
Class: |
A61K 31/7125 20060101
A61K031/7125; C12Q 1/6883 20060101 C12Q001/6883; C12N 15/113
20060101 C12N015/113; C12Q 1/70 20060101 C12Q001/70; A61P 31/14
20060101 A61P031/14; A61K 31/4745 20060101 A61K031/4745; A61K
31/519 20060101 A61K031/519; C07K 16/40 20060101 C07K016/40; A61P
31/20 20060101 A61P031/20 |
Foreign Application Data
Date |
Code |
Application Number |
Jun 17, 2016 |
EP |
16175045.0 |
Claims
1-16. (canceled)
17. An inhibitor of PAPD5 and/or PAPD7 for use in treating a HBV
infection, wherein said inhibitor is a. a small molecule that binds
to PAPD5 and/or PAPD7; or b. an antibody that specifically binds to
PAPD5 and/or PAPD7.
18. The inhibitor according to claim 17, which a. binds to PAPD5
and/or PAPD7 polypeptide; and/or b. inhibits expression and/or
activity of PAPD5 and/or PAPD7.
19. The inhibitor according to claim 17, wherein the inhibitor
reduces secretion of HBsAg and HBeAg.
20. The inhibitor according to claim 17, wherein the inhibitor
inhibits development of chronic HBV infection and/or reduces the
infectiousness of a HBV infected person.
21. The inhibitor according to claim 17, wherein the inhibitor is
the compound of formula (II): ##STR00020## wherein R.sup.1 is
C.sub.1-6alkyl, C.sub.3-7cycloalkyl, haloC.sub.1-6alkyl,
hydroxyC.sub.1-6alkyl, nitroC.sub.1-6alkyl,
C.sub.1-6alkoxycarbonylC.sub.1-6alkyl, carboxyC.sub.1-6alkyl,
di(C.sub.1-6alkoxycarbonyl)methylenyl, cyanoC.sub.1-6alkyl,
C.sub.3-7cycloalkylC.sub.1-6alkyl, phenylC.sub.1-6alkyl,
C.sub.1-6alkylsufanylC.sub.1-6alkyl,
C.sub.1-6alkylsufonylC.sub.1-6alkyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylcarbonylaminoC.sub.1-6alkyl,
C.sub.1-6alkylsufonylaminoC.sub.1-6alkyl, C.sub.1-6alkoxycarbonyl
aminoC.sub.1-6alkyl, aminocarbonylC.sub.1-6alkyl,
diC.sub.1-6alkylaminocarbonylC.sub.1-6alkyl, monocyclic
heterocycloalkylC.sub.1-6alkyl or imidazolylC.sub.1-6alkyl; R.sup.2
is aryl or heteroaryl, said aryl or heteroaryl being unsubstituted,
or substituted by one, two, three or four substituents
independently selected from C.sub.1-6alkyl, C.sub.3-7cycloalkyl,
halogen, haloC.sub.1-6alkyl, cyano, nitro, hydroxy,
haloC.sub.1-6alkoxy, --O--C.sub.xH.sub.2x--R.sup.3,
--O--C.sub.yH.sub.2--NHR.sup.6, --NR.sup.9R.sup.10,
--SO.sub.2--R.sup.11, --SO.sub.2--NR.sup.12R.sup.13, carboxy,
C.sub.1-6alkoxycarbonyl, --C(.dbd.O)--NR.sup.12R.sup.13, aryl,
heteroaryl, monocyclic heterocycloalkyl and --O-monocyclic
heterocycloalkyl; wherein monocyclic heterocycloalkyl is
unsubstituted or substituted by C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, C.sub.1-6alkylcarbonyl, C.sub.1-6alkylsufonyl
or C.sub.1-6alkoxycarbonyl; R.sup.3 is hydrogen;
C.sub.3-7cycloalkyl; haloC.sub.3-7cycloalkyl; hydroxy;
hydroxyC.sub.1-6alkylC.sub.3-7cycloalkyl; C.sub.1-6alkoxy;
monocyclic heterocycloalkyl; monocyclic heterocycloalkyl
substituted by C.sub.1-6alkyl, C.sub.1-6alkylcarbonyl,
C.sub.1-6alkylsufonyl, C.sub.3-7cycloalkyl or
C.sub.1-6alkoxycarbonyl; --C(.dbd.O)--R.sup.4;
C.sub.1-6alkylsulfinyl; --SO.sub.2--R.sup.5;
--C(NHR.sup.7)--C(.dbd.O)--R.sup.8; carboxyC.sub.1-6alkoxy or
aminocarbonylC.sub.1-6alkoxy; wherein R.sup.4 is hydroxy,
C.sub.1-6alkoxy, amino, C.sub.1-6alkylamino, diC.sub.1-6alkylamino,
tetrahydrofuranylamino, pyrrolidinyl or morpholinyl; R.sup.5 is
C.sub.1-6alkyl, C.sub.3-7cycloalkyl, hydroxy, amino,
C.sub.1-6alkylamino or diC.sub.1-6alkylamino; R.sup.7 is hydrogen
or C.sub.1-6alkoxycarbonyl; R.sup.8 is hydroxy or C.sub.1-6alkoxy;
R.sup.6 is hydrogen, C.sub.1-6alkylcarbonyl,
haloC.sub.1-6alkylcarbonyl, C.sub.1-6alkoxycarbonyl,
C.sub.1-6alkylsulfonyl, C.sub.3-7cycloalkylsulfonyl or
C.sub.1-6alkoxyC.sub.1-6alkylsulfonyl; R.sup.9 and R.sup.10 are
independently selected from hydrogen, C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, C.sub.1-6alkylcarbonyl,
C.sub.1-6alkylsulfonyl, C.sub.3-7cycloalkylcarbonyl and
C.sub.3-7cycloalkylsulfonyl; or R.sup.9 and R.sup.10 together with
the nitrogen to which they are attached form monocyclic
heterocycloalkyl; R.sup.11 is C.sub.1-6alkyl, haloC.sub.1-6alkyl,
C.sub.3-7cycloalkyl, haloC.sub.3-7cycloalkyl,
hydroxyC.sub.1-6alkyl, C.sub.1-6alkoxyC.sub.1-6alkyl,
haloC.sub.1-6alkoxyC.sub.1-6alkyl,
C.sub.3-7cycloalkylC.sub.1-6alkyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylaminoC.sub.1-6alkyl,
diC.sub.1-6alkylaminoC.sub.1-6alkyl,
C.sub.1-6alkylcarbonylaminoC.sub.1-6alkyl,
C.sub.1-6alkylsulfonylaminoC.sub.1-6alkyl,
C.sub.1-6alkoxycarbonylaminoC.sub.1-6alkyl,
C.sub.1-6alkylsulfenylC.sub.1-6alkyl,
C.sub.1-6alkylsulfanylC.sub.1-6alkyl or
C.sub.1-6alkylsulfonylC.sub.1-6alkyl; R.sup.12 and R.sup.13 are
independently selected from hydrogen, C.sub.1-6alkyl,
C.sub.1-6alkoxyC.sub.1-6alkyl, haloC.sub.1-6alkyl,
C.sub.3-7cycloalkyl and haloC.sub.3-7cycloalkyl; or R.sup.12 and
R.sup.13 together with the nitrogen to which they are attached form
monocyclic heterocycloalkyl; x is 1, 2, 3, 4, 5, 6, 7 or 8; y is 1,
2, 3, 4, 5, 6, 7 or 8; U, W and Z are independently selected from
CH and N; one of X and Y is N, and the other one is CH or N.
22. The inhibitor for the use according to claim 17, wherein the
inhibitor is an antibody that specifically binds to the amino acid
stretch of any one of SEQ ID NOs: 7, 8 or 9.
23. A pharmaceutical composition for use in the treatment of a HBV
infection, wherein the pharmaceutical composition comprises a. the
inhibitor for the use according to claim 17; and b. a
pharmaceutically acceptable carrier.
24. A method for monitoring the therapeutic success during the
treatment of a HBV infection, wherein the method comprises: a.
analyzing in a sample obtained from a test subject the amount
and/or activity of PAPD5 and/or PAPD7; b. comparing said amount
and/or activity with reference data corresponding to the amount
and/or activity of PAPD5 and/or PAPD7 of at least one reference
subject; and c. predicting therapeutic success based on the
comparison step (b).
25. A pharmaceutical composition for use in the treatment of a HBV
infection, wherein the pharmaceutical composition comprises: a. the
inhibitor according to claim 21; and b. a pharmaceutically
acceptable carrier.
26. A pharmaceutical composition for use in the treatment of a HBV
infection, wherein the pharmaceutical composition comprises: a. the
inhibitor according to claim 21; and b. a pharmaceutically
acceptable carrier.
Description
FIELD OF THE INVENTION
[0001] The present invention relates to a method for identifying a
compound that prevents, ameliorates and/or inhibits a hepatitis B
virus (HBV) infection, wherein a compound that (i) reduces the
expression and/or activity of PAP associated domain containing 5
(PAPD5) and/or PAP associated domain containing 7 (PAPD7); and/or
(ii) binds to PAPD5 and/or PAPD7 and inhibits propagation of HBV;
is identified as a compound that prevents, ameliorates and/or
inhibits a HBV infection. The invention also provides for an
inhibitor of PAPD5 and/or PAPD7 for use in treating and/or
preventing a HBV infection; as well as a combined preparation
comprising an inhibitor of PAPD5 and an inhibitor of PAPD7 for
simultaneous or sequential use in the treatment or prevention of a
HBV infection. Also comprised in the present invention is a
pharmaceutical composition for use in the treatment and/or
prevention of a HBV infection, and a method for monitoring the
therapeutic success during the treatment of a HBV infection.
BACKGROUND
[0002] The hepatitis B virus (HBV) is an enveloped, partially
double-stranded DNA virus. The compact 3.2 kb HBV genome consists
of four overlapping open reading frames (ORF), which encode for the
core, polymerase (Pol), envelope and X-proteins. The Pol ORF is the
longest and the envelope ORF is located within it, while the X and
core ORFs overlap with the Pol ORF. The lifecycle of HBV has two
main events: 1) generation of closed circular DNA (cccDNA) from
relaxed circular (RC DNA), and 2) reverse transcription of
pregenomic RNA (pgRNA) to produce RC DNA. Prior to the infection of
host cells, the HBV genome exists within the virion as RC DNA. It
has been determined that HBV virions are able to gain entry into
host cells by non-specifically binding to the negatively charged
proteoglycans present on the surface of human hepatocytes (Schulze,
Hepatology, 46, (2007), 1759-68) and via the specific binding of
HBV surface antigens (HBsAg) to the hepatocyte sodium-taurocholate
cotransporting polypeptide (NTCP) receptor (Yan, J Virol, 87,
(2013), 7977-91). The control of viral infection needs a tight
surveillance of the host innate immune system which could respond
within minutes to hours after infection to impact on the initial
growth of the virus and limit the development of a chronic and
persistent infection. Despite the available current treatments
based on IFN and nucleos(t)ide analogues, the HBV infection remains
a major health problem worldwide which concerns an estimated 350
million chronic carriers who have a higher risk of liver cirrhosis
and hepatocellular carcinoma.
[0003] The secretion of antiviral cytokines in response to a HBV
infection by the hepatocytes and/or the intra-hepatic immune cells
plays a central role in the viral clearance of the infected liver.
However, chronically infected patients only display a weak immune
response due to various escape strategies adopted by the virus to
counteract the host cell recognition systems and the subsequent
antiviral responses.
[0004] Many observations showed that several HBV viral proteins
could counteract the initial host cellular response by interfering
with the viral recognition signaling system and subsequently the
interferon (IFN) antiviral activity. Among these, the excessive
secretion of HBV empty subviral particles (SVPs, HBsAg) are thought
to participate to the maintenance of the immunological tolerant
state observed in chronically infected patients (CHB). The
persistent exposure to HBsAg and other viral antigens can lead to
HBV-specific T-cell deletion or to progressive functional
impairment (Kondo, Journal of Immunology (1993), 150, 4659-4671;
Kondo, Journal of Medical Virology (2004), 74, 425-433; Fisicaro,
Gastroenterology, (2010), 138, 682-93;). Moreover HBsAg has been
reported to suppress the function of immune cells such as
monocytes, dendritic cells (DCs) and natural killer (NK) cells by
direct interaction (Op den Brouw, Immunology, (2009b), 126, 280-9;
Woltman, PLoS One, (2011), 6, e15324; Shi, J Viral Hepat. (2012),
19, e26-33; Kondo. ISRN Gasteroenterology, (2013), Article ID
935295).
[0005] HBsAg quantification is a significant biomarker for
prognosis and treatment response in chronic hepatitis B. However
the achievement of HBsAg loss and seroconversion is rarely observed
in chronically infected patients but remains one of the ultimate
goals of therapy. Current therapy such as Nucleos(t)ide analogues
are molecules that inhibit HBV DNA synthesis but are not directed
at reducing HBsAg level. Nucleos(t)ide analogs, even with prolonged
therapy, only show weak HBsAg clearance comparable to those
observed naturally (between -1%-2%) (Janssen, Lancet, (2005), 365,
123-9; Marcellin, N. Engl. J. Med., (2004), 351, 1206-17; Buster,
Hepatology, (2007), 46, 388-94).
[0006] Hepatitis B e-antigen (also called HBV envelope antigen or
HBeAg) is a viral protein that is secreted by hepatitis B infected
cells. HBeAg is associated with chronic hepatitis B infections and
is used as a marker of active viral disease and a patient's degree
of infectiousness.
[0007] The function of the hepatitis B virus precore or HBeAg is
not completely known. However HBeAg is well known to play a key
role in viral persistence. HBeAg is thought to promote HBV
chronicity by functioning as an immunoregulatory protein. In
particular, the HBeAg is a secreted accessory protein, which
appears to attenuate the host immune response to the intracellular
nucleocapsid protein (Walsh, Virology, 2011, 411(1):132-141). The
HBeAg acts as an immune tolerogen contributing to HBV persistence,
and possibly functions in utero considering that soluble HBeAg
traverses the placenta (Walsh, Virology, 2011, 411(1):132-141).
Furthermore, HBeAg downregulates: i) cellular genes controlling
intracellular signaling; and ii) the Toll-like receptor 2 (TLR-2)
to dampen the innate immune response to viral infection (Walsh,
Virology, 2011, 411(1):132-141). In the absence of HBeAg, HBV
replication is associated with upregulation of the TLR2 pathway
(Walsh, Virology, 2011, 411(1):132-141). Accordingly, HBeAg has a
significant role in modulating virus/host interactions to influence
the host immune response (Walsh, Virology, 2011, 411(1):132-141).
Thus, reducing HBeAg in HBeAg positive patient population may lead
to reversal of HBV specific immunedysfunction (Milich, 1997, J.
Viral. Hep. 4: 48-59; Milich, 1998, J. Immunol. 160: 2013-2021). In
addition, the secreted HBeAg is significantly more efficient than
the intracellular hepatitis core antigen (HBcAg) at eliciting
T-cell tolerance, and the split T-cell tolerance between the HBeAg
and the HBcAg and the clonal heterogeneity of HBc/HBeAg-specific
T-cell tolerance may have significant implications for natural HBV
infection and especially for precore-negative chronic hepatitis
(Chen, 2005, Journal of Virology, 79: 3016-3027).
[0008] Accordingly, reducing secretion of HBeAg in addition to
secretion of HBsAg would lead to an improved inhibition of
development of a chronic HBV infection as compared to the
inhibition of secretion of HBsAg alone. In addition, the highest
rates of transmission of an acute infection to chronic (>80%)
have been reported in cases of materno-fetal and neonatal HBV
transmission from HBeAg-positive mothers (Liaw, Lancet, 2009, 373:
582-592; Liaw, Dig. Dis. Sci., 2010, 55: 2727-2734; and
Hadziyannis, 2011, Journal of hepatology, 55: 183-191). Therefore,
reducing HBeAg in an expected mother may not only reduce the
patient's degree of infectiousness, but may also inhibit the
development of a chronic HBV infection of her child.
[0009] Therefore, in the therapy of HBV there is an unmet medical
need to inhibit viral expression, particularly to inhibit secretion
of HBsAg and HBeAg (Wieland, S. F. & F. V. Chisari. J Virol,
(2005), 79, 9369-80; Kumar et al. J Virol, (2011), 85, 987-95;
Woltman et al. PLoS One, (2011), 6, e15324; Op den Brouw et al.
Immunology, (2009b), 126, 280-9).
[0010] WO 03/022987 discloses for example in Table 7A 1298 genes
that are upregulated in hepatitis C-positive tissue. One of the
mentioned genes is topoisomerase-related function protein 4 (TRF4,
AF089897). AF089897 is also called TRF4-2, which is quite similar
to position 880 to 2340 of SEQ ID NO: 4 herein. The observation
that a fragment of PAPD5 is upregulated slightly in hepatitis C
positive cells does not provide any indication that inhibiting
PAPD5 represents an effective therapy. WO 03/022987A2 does not
disclose any hint that fragments of PAPD5 plays any critical role
during hepatitis C infection at all. In addition, HCV and HBV are
two completely different viruses leading to two completely
different diseases with different etiologies, different progression
and different medication. This is in line with the observation of
the present inventors that the PAPD5 and PAPD7 inhibitors DHQ and
THP are inactive against hepatitis C virus (HCV) or other viruses
beside HBV (data not shown).
[0011] In WO 2010/040571 PAPD5 has been suggested in a long list of
other genes as having a potential role in cell proliferation in
metabolic and tumorous disease without the provision of any actual
evidence.
[0012] In WO2013/166264 PAPD5 has been suggested in a long list of
other genes as having a potential role in increasing viral
replication without the provision of any actual evidence.
[0013] In WO 2017/066712 down regulation of PAPD5 in relation to
the treatment and diagnosis of telomere diseases has been
described. Five shRNA structures for this purpose have been
described.
[0014] To our knowledge the expression of PAPD5 or PAPD7 has never
been associated with HBV infection.
OBJECTIVE OF THE INVENTION
[0015] Thus, the technical problem underlying the present invention
is the identification and provision of ameliorated means and
methods for treating and/or preventing a HBV infection.
[0016] The technical problem is solved by the provision of the
embodiments described herein and characterized in the claims.
SUMMARY OF INVENTION
[0017] One aspect of the present invention relates to a screening
method, particularly to a method for identifying a compound that
prevents, ameliorates and/or inhibits a HBV infection,
comprising:
[0018] (a) contacting a test compound with
[0019] (a1) PAPD5 polypeptide and/or PAPD7 polypeptide; or
[0020] (a2) a cell expressing PAPD5 and/or PAPD7;
[0021] (b) measuring the expression and/or activity of PAPD5 and/or
PAPD7 in the presence and absence of said test compound; and
[0022] (c) identifying a compound that reduces the expression
and/or activity of PAPD5 and/or PAPD7 as a compound that prevents,
ameliorates and/or inhibits a HBV infection.
[0023] A further aspect of the invention is a method for
identifying a compound that prevents, ameliorates and/or inhibits a
HBV infection, comprising:
[0024] (a) contacting a test compound with [0025] (i) PAPD5 and/or
PAPD7 polypeptide; or [0026] (ii) a cell expressing PAPD5 and/or
PAPD7;
[0027] (b) measuring whether the test compound binds to the PAPD5
and/or to PAPD7 polypeptide;
[0028] (c) measuring whether the test compound inhibits propagation
of HBV; and
[0029] (d) identifying a compound that binds to PAPD5 and/or PAPD7
polypeptide and inhibits propagation of HBV as a compound that
prevents, ameliorates and/or inhibits a HBV infection.
[0030] A further aspect of the present invention is an inhibitor of
PAPD5 and/or PAPD7 for use in treating and/or preventing a HBV
infection, wherein said inhibitor is
[0031] (a) a small molecule that binds to PAPD5 and/or PAPD7;
or
[0032] (b) an antibody that specifically binds to PAPD5 and/or
PAPD7.
[0033] The inhibitor for the use in treating or preventing HBV can
be selected from compounds of Formula (I) or (II). In particular
the inhibitors of Formula (III) and (IV) are useful in the
invention.
BRIEF DESCRIPTION OF THE FIGURES
[0034] The Figures show:
[0035] FIG. 1: Pictures from 1-by-1 experiment with
HBX129653/HBX129654 chemical probes and the 3 prey fragments.
[0036] FIG. 2: Pictures from 1-by-1 experiment with
HBX129653/HBX129654 chemical probes and PAPD5/7 full length
proteins.
[0037] FIG. 3: Pictures from competition assay using HBX129653
(DHQ) and MOL653/654 for competition
[0038] FIG. 4: Pictures from competition assay using HBX129654
(THP) and MOL653/654 for competition
[0039] FIG. 5: Pictures from competition assay using HBX129653
(DHQ) and INACT653/INACT654 for competition. MOL653 was included as
positive control.
[0040] FIG. 6: Pictures from competition assay using HBX129654
(THP) and INACT653/INACT654 for competition. MOL653 was included as
positive control.
[0041] FIG. 7: (A) SiRNA knock-down (KD) of PAPD5 and PAPD7 in
HBV-infected dHepaRG leads to reduction in HBV expression.
Differentiated HepaRG cells were infected with HBV and treated with
siRNA against either PAPD5, PAPD7 or both (25 nM each) one day
prior to HBV infection and on day 4 post infection. Supernatant
were harvested on day 11, levels of HBsAg and HBeAg secreted in the
supernatant were measured by ELISA and normalized to non-treated
control. Cell toxicity and inhibition of gene expression was
measured subsequently and also normalized to the non-treated
control. (B) The same experiment as described in (A) was performed,
with the exception that only the level of HBsAg secreted in the
supernatant was measured.
DETAILED DESCRIPTION OF THE INVENTION
[0042] PAPD5 and PAPD7 are non-canonical poly(A)-polymerases that
belong to the superfamily of polymerase .beta.-like nucleotidyl
transferases. In context of the present invention it has
surprisingly been shown that a compound that is useful for the
therapeutic intervention of a HBV infection can successfully be
identified by analyzing whether a test compound inhibits PAPD5
and/or PAPD7. Or, in other words, inhibition of PAPD5 and/or PAPD7
was identified in the appended examples as being an indicator for
the efficacy of a compound to inhibit a HBV infection. The appended
examples demonstrate that a dihydroquinolizinone compound having
the formula (III) as shown herein below (herein called DHQ) and a
tetrahydropyridopyrimidine compound having the formula (IV) as
shown herein below (herein called THP) bind to PAPD5 and PAPD7
polypeptides. These compounds have the capacity to inhibit
production of HBV surface antigen (HBsAg) and the expression of HBV
RNA during HBV infection (WO 2015/113990 A1 and WO2016/177655). In
addition, the appended examples show that inhibition of PAPD5
and/or PAPD7 by using siRNA leads to an inhibition of viral
expression, particularly of the secretion of HBsAg and HBeAg as
well as of the production of intracellular HBV mRNA. These results
directly indicate that by reducing the amount and/or activity (e.g.
the amount) of PAPD5 and/or PAPD7 an HBV infection (e.g. a chronic
HBV infection) can be prevented or treated (i.e. ameliorated and/or
inhibited). Thus, the present invention relates to a screening
method, wherein a compound that reduces the expression and/or
activity (e.g. the expression) of PAPD5 and/or PAPD7 (e.g. of PAPD5
and PAPD7) is identified as a compound that prevents and/or treats
(i.e. ameliorates and/or inhibits) a HBV infection.
[0043] It has been found in context of the present invention that a
compound antagonizes (i.e. inhibits) PAPD5 and/or PAPD7 leads to
inhibition of HBV gene expression and replication; and thus,
prevents, ameliorates and/or inhibits a HBV infection. Such a
compound may lead to a reduction of the PAPD5 and/or PAPD7
expression and/or activity of 10-100%, preferably of 20-100%, more
preferably of 30-100%, even more preferably of 40-100%, even more
preferable of 50-100%, even more preferably of 60-100%, even more
preferably of 70-100%, even more preferably of 80-100%, and most
preferably of 90-100%.
[0044] In the herein provided screening method it is envisaged that
the expression of PAPD5 and/or PAPD7 is measured (i.e.
analyzed/determined) by using in step (a) a cell expressing PAPD5
and/or PAPD7, i.e. (ai). The activity of PAPD5 and/or PAPD7 may be
measured (i.e. analyzed/determined) by using in step (a) either
(ai) PAPD5 and/or PAPD7 polypeptide, e.g. in a cell-free
preparation; or (aii) a cell expressing PAPD5 and/or PAPD7.
[0045] In one aspect of the invention, a compound that reduces the
expression of PAPD5 and/or PAPD7 (e.g. of PAPD5, preferably of
PAPD5 and PAPD7) is identified as a compound that prevents,
ameliorates and/or inhibits (i.e. treats) HBV infection. In another
aspect of the invention a compound that reduces the activity of
PAPD5 and/or PAPD7 (e.g. of PAPD5, preferably of PAPD5 and PAPD7)
is identified as a compound that prevents, ameliorates and/or
inhibits (i.e. treats) a HBV infection. It is prioritized that a
compound that reduces the expression and/or activity of PAPD5 or of
both molecules, PAPD5 and PAPD7, is identified as a compound that
prevents, ameliorates and/or inhibits a HBV infection. Most
preferably, a compound that reduces the expression and/or activity
of both molecules, PAPD5 and PAPD7, is identified as a compound
that prevents, ameliorates and/or inhibits a HBV infection.
[0046] In accordance with the present invention a compound that
prevents and/or treats (i.e. ameliorates and/or inhibits) a HBV
infection can be identified (i.e. selected) by performing a first
pre-selection step in order to identify a compound that binds to
PAPD5 and/or PAPD7. Subsequently, in a second step, it may be
evaluated whether a compound that has been identified as binding to
PAPD5 and/or PAPD7 inhibits propagation of HBV. Thus, the present
invention relates to a further screening method, wherein a compound
that binds to PAPD5 and/or PAPD7 (e.g. to PAPD5 and PAPD7) and
inhibits propagation of HBV is identified as a compound that
prevents, ameliorates and/or inhibits (i.e. treats) a HBV
infection.
[0047] Thus, the invention relates to a method for identifying a
compound that prevents, ameliorates and/or inhibits a HBV
infection, comprising:
[0048] (a) contacting a test compound with
[0049] (ai) PAPD5 polypeptide and/or PAPD7 polypeptide; or
[0050] (aii) a cell expressing PAPD5 and/or PAPD7;
[0051] (b) measuring whether the test compound binds to PAPD5
and/or to PAPD7;
[0052] (c) measuring whether the test compound inhibits propagation
of HBV; and
[0053] (d) identifying a compound that binds to PAPD5 and/or PAPD7
and inhibits propagation of HBV as a compound that prevents,
ameliorates and/or inhibits a HBV infection.
[0054] Thus, in accordance with the present invention a compound
that binds to PAPD5 and/or PAPD7 (e.g. to PAPD5, preferably to
PAPD5 and PAPD7) and inhibits propagation of HBV is identified as a
compound that prevents, ameliorates and/or inhibits (i.e. treats) a
HBV infection. It is prioritized that a compound that (i) binds to
PAPD5, or that binds to both molecules, PAPD5 and PAPD7; and (ii)
inhibits propagation of HBV, is identified as a compound that
prevents, ameliorates and/or inhibits a HBV infection. Most
preferably, a compound that binds to both molecules, PAPD5 and
PAPD7, and inhibits propagation of HBV, is identified as a compound
that prevents, ameliorates and/or inhibits a HBV infection.
[0055] The above described screening methods lead to the
identification of a compound that prevents, ameliorates and/or
inhibits a HBV infection. It is prioritized that said compounds
ameliorates and/or inhibits (i.e. treats) a HBV infection. Thus,
the herein provided screening methods are useful in the
identification of a compound that treats a HBV infection.
[0056] In the context of the present invention, PAPD5 may be the
PAPD5 polypeptide or the PAPD5 mRNA. It is prioritized in context
of the screening methods provided herein that PAPD5 is the PAPD5
polypeptide. One aspect of the present invention relates to the
herein provided screening methods, wherein the PAPD5 polypeptide is
a polypeptide comprising or consisting of
[0057] (a) the amino acid sequence of SEQ ID NO: 1 or 2;
[0058] (b) an amino acid sequence having at least 80%, preferably
at least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to an
amino acid sequence of (a), wherein the polypeptide has poly-A
polymerase function;
[0059] (c) the amino acid sequence of an enzymatically active
fragment of SEQ ID NO: 1 or 2; or
[0060] (d) an amino acid sequence having at least 80%, preferably
at least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to an
amino acid sequence of (d), wherein the polypeptide has poly-A
polymerase function.
[0061] Examples for enzymatically active fragments of SEQ ID NO: 1
or 2 (i.e. of PAPD5) are the nucleotidyltransferase domain at
positions 145-256 of SEQ ID NO: 1 or 2, or the Cid1 poly A
polymerase at positions 308-368 of SEQ ID NO: 1 or 2.
[0062] Another aspect of the present invention relates to the
herein provided screening methods, wherein the cells expressing
PAPD5 contain PAPD5 mRNA, a polynucleotide comprising or consisting
of
[0063] (i) the nucleotide sequence encoding the amino acid sequence
of SEQ ID NO: 1 or 2;
[0064] (ii) a nucleotide sequence encoding an amino acid sequence
having at least 80%, preferably at least 90%, more preferably at
least 95%, even more preferably at least 98%, and even more
preferably at least 99% identity to SEQ ID NO: 1 or 2, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function;
[0065] (iii) the nucleotide sequence encoding an enzymatically
active fragment of SEQ ID NO: 1 or 2;
[0066] (iv) a nucleotide sequence encoding an amino acid sequence
having at least 80%, preferably at least 90%, more preferably at
least 95%, even more preferably at least 98%, and even more
preferably at least 99% identity to an amino acid sequence of an
enzymatically active fragment of SEQ ID NO: 1 or 2, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function;
[0067] (v) a nucleotide sequence comprising or consisting of SEQ ID
NO: 4 or 5; or
[0068] (vi) a nucleotide sequence having at least 80%, preferably
at least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to SEQ ID
NO: 4 or 5, wherein the polypeptide expressed from the sequence has
poly-A polymerase function; or
[0069] (vii) a pre-mRNA that when processed (i.e. spliced) leads to
a polynucleotide of (v) or (vi).
[0070] In preferred embodiments, the PAPD5 mRNA may be a
polynucleotide comprising or consisting of the nucleotide sequence
of SEQ ID NO: 4 or 5. However, the PAPD5 mRNA may also be a
polynucleotide comprising or consisting of a nucleotide sequence
having at least 80%, preferably at least 90%, more preferably at
least 95%, even more preferably at least 98%, and even more
preferably at least 99% identity to SEQ ID NO: 4 or 5, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function.
[0071] In context of the present invention PAPD7 may be the PAPD7
polypeptide or the PAPD7 mRNA. It is prioritized in context of the
screening methods provided herein that PAPD7 is the PAPD7
polypeptide. One aspect of the present invention relates to the
herein provided screening methods, wherein the PAPD7 polypeptide is
a polypeptide comprising or consisting of
[0072] (a) the amino acid sequence of SEQ ID NO: 3;
[0073] (b) an amino acid sequence having at least 80%, preferably
at least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to an
amino acid sequence of (a), wherein the polypeptide has poly-A
polymerase function;
[0074] (c) the amino acid sequence of an enzymatically active
fragment of SEQ ID NO: 3; or
[0075] (d) an amino acid sequence having at least 80%, preferably
at least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to an
amino acid sequence of (c), wherein the polypeptide has poly-A
polymerase function.
[0076] Examples for enzymatically active fragments of SEQ ID NO: 3
(i.e. of PAPD7) are the nucleotidyltransferase domain at positions
15-125 of SEQ ID NO: 3; or the Cid1 family poly A polymerase at
positions 178-238 of SEQ ID NO: 3.
[0077] Another aspect of the present invention relates to the
herein provided screening methods, wherein the cells expressing
PAPD7 contain PAPD7 mRNA, a polynucleotide comprising or consisting
of
[0078] (i) the nucleotide sequence encoding the amino acid sequence
of SEQ ID NO: 3;
[0079] (ii) a nucleotide sequence encoding an amino acid sequence
having at least 80%, preferably at least 90%, more preferably at
least 95%, even more preferably at least 98%, and even more
preferably at least 99% identity to SEQ ID NO: 3, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function;
[0080] (iii) the nucleotide sequence encoding an enzymatically
active fragment of SEQ ID NO: 3; or (iv) a nucleotide sequence
encoding an amino acid sequence having at least 80%, preferably at
least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to an
amino acid sequence of an enzymatically active fragment of SEQ ID
NO: 3, wherein the polynucleotide encodes a polypeptide that has
poly-A polymerase function; or
[0081] (v) a nucleotide sequence comprising or consisting of SEQ ID
NO: 6; or
[0082] (vi) a nucleotide sequence having at least 80%, preferably
at least 90%, more preferably at least 95%, even more preferably at
least 98%, and even more preferably at least 99% identity to SEQ ID
NO: 6, wherein the polypeptide expressed from the sequence has
poly-A polymerase function; or
[0083] (vii) a pre-mRNA that when processed (i.e. spliced) leads to
a polynucleotide of (v) or (vi).
[0084] In preferred embodiments, the PAPD7 mRNA may be a
polynucleotide comprising or consisting of the nucleotide sequence
of SEQ ID NO: 6. However, the PAPD7 mRNA may also be a
polynucleotide comprising or consisting of a nucleotide sequence
having at least 80%, preferably at least 90%, more preferably at
least 95%, even more preferably at least 98%, and even more
preferably at least 99% identity to SEQ ID NO: 6, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function.
[0085] In context of the present invention said cell may be a
eukaryotic cell. For example, said cell may be a yeast cell or a
vertebrate cell. Vertebrate cells include fish, avian, reptilian,
amphibian, marsupial, and mammalian cells. Preferably, the cell is
a mammalian cell, most preferably, a human cell. Mammalian cells
also include feline, canine, bovine, equine, caprine, ovine,
porcine murine, such as mice and rat, and rabbit cells. In the
herein provided screening methods, the "cell" may endogenously
express PAPD5 and/or PAPD7 or overexpress PAPD5 and/or PAPD7. For
overexpressing PAPD5 and/or PAPD7 the cell may comprise the
nucleotide sequence encoding the PAPD5 polypeptide and/or the PAPD7
polypeptide within an expression vector. In preferred embodiments
the cell comprise a nucleotide sequence encoding the PAPD5
polypeptide and a nucleotide sequence encoding the PAPD7
polypeptide. The cell of the herein provided screening methods may
be comprised in a non-human animal, e.g. a mouse, rat, rabbit or
ferret.
[0086] In the above described screening method wherein the binding
to PAPD5 and/or PAPD7 is measured, a compound may be identified as
a compound that binds to PAPD5 polypeptide and/or PAPD7 polypeptide
if it has a particular binding affinity to PAPD5 and/or PAPD7. For
example, the compound that binds to PAPD5 and/or PAPD7 may have a
dissociation constant (Kd) in the micromolar range; or, preferably,
in the range of 100 nM to 1 pM.
[0087] In context of the present invention it may be measured (i.e.
analyzed) whether the test compound specifically binds to PAPD5
polypeptide and/or PAPD7 polypeptide, i.e. whether the test
compound exclusively or predominately binds to PAPAD5 and/or PAPD7.
For example, it may be measured whether the test compound
specifically binds to PAPD7. Preferably, it is measured whether the
test compound specifically binds to PAPD5. More preferably it is
measured whether the test compound binds to both, PAPD5 and PAPD7.
For example, it may be measured whether the test compound
specifically binds to PAPD5 and PAPD7.
[0088] For example, in the herein provided screening methods,
binding of the test compound to PAPD5 and/or PAPD7 may be measured
by conducting a yeast 3 hybrid screen. The Y3H system is a modified
version of the yeast two-hybrid (Y2H) system adapted for the
detection of drug-protein interactions. It requires coupling of the
drug of interest with a ligand that can be anchored to a
DNA-binding protein inside yeast cells. The interaction of the
anchored drug with a target protein is then detected by linking
their association to the transcriptional activation of a reporter
gene; see, e.g. Johnsson, Nature Chem Bio, 2011, 7: 375-383; and
Licitra, Proc Natl Acad Sci USA, 1996, 12; 93(23):12817-21. In such
a yeast 3 hybrid screen an inactive free compound may be used for
competition against the labeled test compound.
[0089] Binding of a test compound to PAPD5 and/or PAPD7 may also be
measured by using Biacore, ChemoProteomics, or Microscale
Thermophoresis.
[0090] A compound that inhibits the propagation of HBV may be a
compound that reduces the expression of viral RNA, that reduces the
production of viral DNA (HBV DNA) deriving from viral RNA (HBV
RNA), that reduces the production of new viral particles (HBV
particles), and/or that produces production and/or secretion of
HBsAg and/or HBeAg. Thus, one aspect of the present invention
relates to the herein provided screening methods, wherein the
compound that inhibits propagation of HBV inhibits secretion of
HBsAg, inhibits secretion of HBeAg, and/or inhibits production of
intracellular HBV mRNA or HBV DNA. Preferably, a compound that
inhibits the propagation of HBV is a compound that inhibits
secretion of HBsAg, secretion of HBeAg and production of
intracellular HBV mRNA.
[0091] For example, a compound that inhibits propagation of HBV may
reduce the expression of viral RNA (HBV RNA), the production of
viral DNA (HBV DNA) deriving from viral RNA, the production of new
viral particles (HBV particles), the production and/or secretion of
HBsAg and/or HBeAg by 10-100%, preferably by 20-100%, more
preferably by 30-100%, even more preferably by 40-100%, even more
preferable by 50-100%, even more preferably by 60-100%, even more
preferably by 70-100%, even more preferably by 80-100%, and most
preferably by 90-100%, when compared the untreated cells or animals
or cell or animal treated with an appropriate control.
[0092] The herein provided screening methods may additionally
comprise the step of comparing the test compound to a control. Said
control may be an inactive test compound, wherein said inactive
test compound is a compound that:
[0093] (i) does not reduce the expression and/or activity of PAPD5
and/or PAPD7; and/or
[0094] (ii) does not bind to PAPD5 and/or PAPD7 and does not
inhibit propagation of HBV.
[0095] This inactive test compound has no activity against HBV,
e.g. it does not lead to inhibition of secretion of HBsAg and HBeAg
and to inhibition of production of intracellular HBV mRNA. For
example, the inactive test compound may have an IC.sub.50 value in
the inhibition of HBsAg of more than 3 In the herein provided
screening method, the inactive test compound may be the compound
"DHQ compound inactive" or the compound "THP compound inactive" as
defined in the appended examples. In the screening method wherein
expression and/or activity of PAPD5 and/or PAPD7 is measured, the
test compound as defined above in (i) may be used. Alternatively,
in the screening method wherein binding to PAPD5 and/or PAPD7 is
measured, the test compound as defined above in (ii) may be used.
An inactive compound can be designed from an active one, e.g., by
chemical modification and/or chiral separation.
[0096] In the herein provided screening methods, the activity of
PAPD5 and/or PAPD7 in the presence and absence of the test compound
may be measured, e.g. by monitoring the in vitro polyadenylation of
mRNA, e.g., as described in Rammelt, RNA, 2011, 17:1737-1746. In
brief, a ribo-oligonucleotide A.sub.15 may be incubated with
recombinant PAPD5 protein expressed in Escherichia coli in the
presence of ATP(A), CTP (C), GTP(G), UTP(U), or a mixture of all
four dNTPs, respectively.
[0097] The expression of PAPD5 and/or PAPD7 in the presence and
absence of the test compound may be measured, e.g. by using (q)PCR,
western blot, or MassSpec.
[0098] Inhibition of propagation of HBV may be measured, e.g., by
measuring whether the test compound has the activity to inhibit
secretion of HBsAg and/or of HBeAg, and/or to inhibit production of
intracellular HBV mRNA. Inhibition of secretion of HBsAg and/or
HBeAg may be measured by ELISA, e.g. by using the CLIA ELISA Kit
(Autobio Diagnostic) according to the manufacturers' instructions.
Inhibition of production of intracellular HBV mRNA may be measured
by real-time PCR, e.g. as described in the appended examples.
Further methods for evaluating whether a test compound inhibits
propagation of HBV are measuring secretion of HBV DNA by RT-qPCR
e.g. as described in WO 2015/173208; Northern Blot; in-situ
hybridization, or immuno-fluorescence.
[0099] For performing the herein provided screening methods
publicly or commercially available molecule libraries may be used.
Thus, in context of the invention the said test compound may be
[0100] (i) a small molecule of a screening library; or
[0101] (ii) a peptide of a phage display library, of an antibody
fragment library, or derived from a cDNA library.
[0102] For example, the cDHA Human Liver (HLV) library or the cDNA
Human Placenta (PLA) library of Hybrigenics Services SAS may be
used.
[0103] In the herein provided screening method wherein the activity
of PAPD5 polypeptide and/or PAPD7 polypeptide is measured, said
activity of PAPD5 and PAPD7 is preferably the poly-A polymerase
function (i.e. the poly-A polymerase activity). The poly-A
polymerase function/activity of a polypeptide (e.g. of PAPD5 or
PAPD7) may be measured, e.g. by monitoring the in vitro
polyadenylation of mRNA, e.g. as described in Rammelt, RNA, 2011,
17:1737-1746. This method can also be used to measure the poly-A
polymerase function of PAPD5 and/or PAPD7 in the presence and
absence of a test compound.
[0104] The appended examples demonstrate that by inhibiting PAPD5
and/or PDPD7 polypeptide, the secretion of HBsAg and HBeAg as well
as production of intracellular HBV mRNA can effectively be
inhibited. These data demonstrate that an inhibitor of PAPD5 and/or
PAPD7 can be used to prevent and/or treat a HBV infection.
[0105] Several compounds that have a certain efficacy in the
treatment of a HBV infection have been described in the art (see,
e.g. WO 2015/113990 A1 and WO 2016/177655). However, in context of
the present invention it has surprisingly been found that anti-HBV
agents that are completely different in structure (e.g. DHQ and
THP) surprisingly and specifically bind to PAPD5 and PAPD7. In
addition, the prior art also encompass agents less active in the
inhibition of HBsAg production. Such agents have been shown in the
appended examples to have less binding affinity to PAPD5 and PAPD7
(see, e.g., "DHQ inactive"). Indeed, the appended examples
demonstrate a clear correlation between activity of the compound
against a HBV infection and binding affinity towards PAPD5 and
PAPD7. Thus, selectively using an anti-HBV agent that binds to
PAPD5 and/or PAPD7 leads to particularly high anti-HBV efficacy.
Furthermore, the present invention shows for the first time that a
compound that inhibits PAPD5, PAPD7, or particularly PAPD5 and
PAPD7 has an extraordinary high activity in terms of inhibition of
secretion of HBsAg and HBeAg as well as of production of
intracellular HBV mRNA. Reduction of secretion of HBsAg and HBeAg
inhibits development of chronic HBV infection more effectively as
compared to the reduction of secretion of HBsAg alone. In addition,
inhibition of secresion of HBsAg and HBeAg reduces the
infectiousness of a HBV infected person. Furthermore, reducing
HBeAg in an expected mother may also inhibit the development of a
chronic HBV infection of her child. Thus, the present invention
unexpectedly demonstrates that selectively using compounds that
inhibit PAPD5 and/or PAPD7 leads to an improved therapeutic success
in the treatment of a HBV infection in terms of a considerably more
effective reduction of HBsAg and HBeAg.
[0106] Accordingly, an aspect of the present invention is use of an
inhibitor of PAPD5 and/or PAPD7 in the treatment of HBV infection,
in particular a chronic HBV infection. In a further embodiment the
invention relates to the use of an inhibitor of a PAPD5 and/or
PAPD7 in reduction of the viral antigens HBsAg and HBeAg.
[0107] Thus, the present invention relates to an inhibitor of PAPD5
and/or PAPD7 for use in treating and/or preventing a HBV infection,
wherein said inhibitor is
[0108] (i) a small molecule that binds to PAPD5 and/or PAPD7;
[0109] (ii) a RNA interference (RNAi) molecule against PAPD5 and/or
PAPD7;
[0110] (iii) an antibody that specifically binds to PAPD5 and/or
PAPD7; or
[0111] (iv) a genome editing machinery, comprising:
[0112] (a) a site-specific DNA nuclease or a polynucleotide
encoding a site-specific DNA nuclease; and
[0113] (b) a guide RNA or a polynucleotide encoding a guide
RNA.
[0114] The inhibitor of the present invention may also be a PAPD5
and/or PAPD7 specific locked nucleic acid (LNA) molecule.
[0115] It is envisaged that the inhibitor of the invention is used
for treating (e.g. ameliorating) a HBV infection.
[0116] The inhibitor may be a molecule that specifically inhibits
PAPD7. Preferably, the inhibitor is a molecule that specifically
inhibits PAPD5. More preferably, the inhibitor inhibits both, PAPD5
and PAPD7. Thus, it is prioritized that the inhibitor of the
present invention either inhibits PAPD5 or both, PAPD5 and PAPD7.
Most preferably, the inhibitor of the present invention inhibits
PAPD5 and PAPD7. In one aspect of the invention the inhibitor of
the present invention inhibits both, PAPD5 and PAPD7 and leads to a
reduction of secretion of HBsAg and/or HBeAg of at least 50% as
compared to the no drug control (i.e. compared to cells or subjects
to which no drug has been administrated).
[0117] The inhibitor of the present invention may have an IC.sub.50
value in the inhibition of HBsAg and HBeAg of below 3 .mu.M,
preferably of below 2 .mu.M, more preferably belo 1 .mu.M, more
preferably below 0.1 .mu.M, and most preferably below 0.01
.mu.M.
[0118] Genome editing by using a site-specific DNA nuclease (such
as Cas9 or Cpf1) and a guide RNA is commonly known in the art and
described, e.g., in "CRISPR-Cas: A Laboratory Manual", 2016, edited
by Jennifer Doudna, ISBN 978-1-621821-31-1.
[0119] For example, if said site-specific DNA nuclease is a Cas9
nuclease, then the genome editing machinery preferably further
comprises:
[0120] (i) at least one guide RNA consisting of at least one target
sequence specific CRISPR RNA (crRNA) molecule and at least one
trans-activating crRNA (tracrRNA) molecule;
[0121] (ii) a polynucleotide encoding the RNA molecules of (i);
[0122] (iii) at least one guide RNA, which is a chimeric RNA
molecule comprising at least one target sequence specific crRNA and
at least one tracrRNA; or
[0123] (iv) a polynucleotide encoding the chimeric RNA of
(iii).
[0124] In an alternative example the site-specific DNA nuclease is
a Cpf1 nuclease, and the genome editing machinery preferably
further comprises:
[0125] (i) at least one guide RNA comprising a target sequence
specific CRISPR RNA (crRNA) molecule; or
[0126] (ii) a polynucleotide encoding the RNA molecules of (i).
[0127] The herein provided inhibitor of PAPD5 and/or PAPD7 may also
be a genome editing machinery that comprises at least one
pre-assembled Cas9 protein-guide RNA ribonucleoprotein complex
(RNP).
[0128] Herein, the guide RNA is designed to target the genomic
PAPD5 or PAPD7 DNA. Alternatively, several guide RNAs are used, so
that the genomic DNA of PAPD5 and of PAPD7 can be targeted.
Inhibition of PAPD5 and/or PAPD7 may be achieved by introducing
frame-shift knockout mutations into the genomic PAPD5 and/or PAPD7
DNA through non-homologous end-joining (NHEJ), or by modifying the
genomic PAPD5 and/or PAPD7 DNA through homology-directed repair
(HDR). How these mechanisms can be induced is commonly known in the
art and described, e.g., in Heidenreich, 2016, Nat Rev Neurosci 17
36-44.
[0129] The inhibitor of the present invention may be a naturally
occurring molecule, e.g. a naturally occurring antibody or a
naturally occurring RNAi molecule. However, the inhibitor of the
present invention may also be a non-naturally occurring molecule.
For example, the inhibitor of the invention may be an antibody
having an amino acid sequence that is not identical to naturally
occurring antibodies or may be an antibody comprising at least one
non-naturally occurring amino acid residue such as synthetic amino
acids providing similar side chain functionality. For example,
aromatic amino acids may be replaced with D- or L-naphthylalanine,
D- or L-phenylglycine, D- or L-2-thienylalanine, D- or L-1-, 2-,
3-, or 4-pyrenylalanine, D- or L-3-thienylalanine, D- or
L-(2-pyridinyl)-alanine, D- or L-(3-pyridinyl)-alanine, D- or
L-(2-pyrazinyl)-alanine, D- or L-(4-isopropyl)-phenylglycine,
D-(trifluoromethyl)-phenylglycine,
D-(trifluoromethyl)-phenylalanine, D-p-fluorophenylalanine, D- or
L-pbiphenylalanine D- or L-p-methoxybiphenylalanine, D- or
L-2-indole(alkyl)alanines, and D- or Lalkylalanines wherein the
alkyl group is selected from the group consisting of substituted or
unsubstituted methyl, ethyl, propyl, hexyl, butyl, pentyl,
isopropyl, iso-butyl, and iso-pentyl. Non-carboxylate amino acids
can be made to possess a negative charge, as provided by phosphono-
or sulfated amino acids, which are to be considered as non-limiting
examples. Further non-natural amino acids are alkylated amino
acids, made by combining an alkyl group with any natural amino
acid. Basic natural amino acids such as lysine and arginine may be
substituted with alkyl groups at the amine (NH.sub.2)
functionality. Yet other substitutions on non-natural amino acids
include nitrile derivatives (e.g., containing a CN-moiety in place
of the CONH.sub.2 functionality) of asparagine or glutamine, and
sulfoxide derivative of methionine.
[0130] Analogously, the inhibitor of the invention may be a RNAi
molecule having a nucleotide sequence that is not identical to
naturally occurring RNAi molecules or may be a RNAi molecule
comprising at least one non-naturally occurring nucleotides, such
as a oligonucleotide thiophosphate, a substituted
ribo-oligonucleotide, a LNA molecule, a PNA molecule, a GNA (glycol
nucleic acid) molecule, a TNA (threose nucleic acid) molecule, a
morpholino polynucleotide, or a nucleic acid with a modified
backbone such as polysiloxane, 2'-O-(2-methoxy)
ethyl-phosphorothioate, or a nucleic acid with a substituent, such
as methyl-, thio-, sulphate, benzoyl-, phenyl-, amino-, propyl-,
chloro-, and methanocarbanucleoside, or a reporter molecule to
facilitate its detection. The inhibitor of the invention may also
be naturally occurring or a non-naturally occurring small molecule
or genome editing machinery.
[0131] In context of the present invention, the herein provided
inhibitor may
[0132] (i) bind to PAPD5 and/or PAPD7 polypeptide; and/or
[0133] (ii) inhibit expression and/or activity of PAPD5 and/or
PAPD7.
[0134] For example, the inhibitor of the present invention may bind
to PAPD5 polypeptide and inhibit activity of PAPD5 polypeptide. In
another example, the inhibitor of the present invention binds to
PAPD7 polypeptide and inhibits activity of PAPD7 polypeptide. It is
prioritized herein that the inhibitor binds to both, PAPD5 and
PAPD7 polypeptide and inhibits the activity of both, PAPD5 and
PAPD7 polypeptide. The inhibitor of the present invention may
inhibit the expression of PAPD5 or PAPD7; or may inhibit the
expression of both, PAPD5 and PAPD7.
[0135] As described above, in context of the present invention it
has been shown that a compound that inhibits PAPD5 and/or PAPD7 has
a high activity in terms of inhibition of secretion of HBsAg and
HBeAg as well as of production of intracellular HBV mRNA.
Therefore, the inhibitor of the present invention reduces secretion
of HBsAg and HBeAg. Due to the reduction of HBsAg secretion the
inhibitor of the present invention inhibits development of chronic
HBV infection. In particular, due to inhibition of HBeAg secretion,
the inhibitor of the present invention more efficiently inhibits
development of a chronic HBV infection as compared to a compound
that only reduces secretion of HBsAg. In addition, reducing HBeAg
in an expected mother may also inhibit the development of a chronic
HBV infection of her child. Thus, due to the reduction of HBeAg
secretion the inhibitor of the present invention inhibits
development of a chronic HBV infection (such as development of a
chronic HBV infection in the offspring of an HBV infected mother)
and reduces the infectiousness of a HBV infected person.
Accordingly, one aspect of the present invention related to the
herein provided inhibitor, wherein the inhibitor reduces secretion
of HBsAg and HBeAg. In line with this, a further aspect of the
invention relates to the herein provided inhibitor, wherein the
inhibitor inhibits development of chronic HBV infection and reduces
the infectiousness of a HBV infected person. In a particular aspect
of the invention, the herein provided inhibitor inhibits
development of a chronic HBV infection in the offspring of a HBV
infected mother. This mother is preferably HBeAg positive.
[0136] The subject to be treated with the inhibitor of the
invention (or which prophylactically receives the inhibitor of the
present invention) is preferably a human, more preferably a human
patient who is HBsAg positive and/or HBeAg positive, even more
preferably a human patient that is HBsAg positive and HBeAg
positive. Said human patient may be an expected mother, e.g. an
expected mother who is HBeAg positive and/or HBsAg positive, more
preferably an expected mother who is HBeAg positive and HBsAg
positive.
[0137] Compounds of the Invention
[0138] As described above, the inhibitor of the present invention
may be a small molecule. For example, the inhibitor of the
invention may be the compound of formula (I) or (II):
##STR00001##
[0139] wherein
[0140] R.sup.1 is hydrogen, halogen, C.sub.1-6alkyl,
C.sub.1-6alkylamino or C.sub.1-6alkoxy;
[0141] R.sup.2 is hydrogen; halogen; C.sub.1-6alkyl, which is
unsubstituted or once, twice or three times substituted by fluoro;
C.sub.1-6alkoxy, which is unsubstituted or once, twice or three
times substituted by fluoro; cyano; C.sub.3-7cycloalkyl; hydroxy or
phenyl-C.sub.xH.sub.2x--O--;
[0142] R.sup.3 is hydrogen;
[0143] halogen;
[0144] C.sub.1-6alkyl, which is unsubstituted or once, twice or
three times substituted by fluoro;
[0145] cyano;
[0146] pyrrolidinyl;
[0147] amino;
[0148] phenyl-C.sub.xH.sub.2x--N(C.sub.1-6alkyl)-;
[0149] C.sub.1-6alkoxycarbonylpiperazinyl;
[0150] or R.sup.7--O--, wherein R.sup.7 is hydrogen;
C.sub.1-8alkyl, which is unsubstituted or substituted with one to
three substituents independently selected from fluoro, hydroxy and
C.sub.2-6alkenyl; C.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkoxyC.sub.1-6alkoxyC.sub.1-6alkyl; aminoC.sub.1-6alkyl;
C.sub.1-6alkylcarbonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfanylC.sub.1-6alkyl;
C.sub.1-6alkylsulfonylC.sub.1-8alkyl; cyanoC.sub.1-6alkyl;
C.sub.3-7cycloalkylC.sub.1-6alkyl;
cyanoC.sub.3-7cycloalkylC.sub.1-6alkyl; phenylC.sub.1-6alkyl;
pyrrolidinylcarbonylC.sub.1-6alkyl; C.sub.2-6alkynyl;
hydroxyC.sub.1-6alkylC.sub.2-6alkynyl;
aminoC.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkylaminoC.sub.1-6alkoxyC.sub.1-6alkyl;
diC.sub.1-6alkylaminoC.sub.1-6alkoxyC.sub.1-6alkyl;
carboxyC.sub.1-6alkyl; or
C.sub.1-6alkoxycarbonylaminoC.sub.1-8alkyl;
heteroarylC.sub.1-6alkyl, wherein heteroaryl is N-containing
monocyclic heteroaryl; or heterocycloalkylC.sub.1-6alkyl, wherein
heterocycloalkyl is monocyclic heterocycloalkyl;
[0151] R.sup.4 is hydrogen, halogen, C.sub.1-6alkyl, cyano or
C.sub.1-6alkoxy;
[0152] provided that R.sup.1, R.sup.2, R.sup.3 and R.sup.4 are not
hydrogen simultaneously;
[0153] R.sup.5 is hydrogen or C.sub.1-6alkyl;
[0154] R.sup.6 is hydrogen; C.sub.1-6alkyl, which is unsubstituted
or once, twice or three times substituted by fluoro;
C.sub.3-7cycloalkyl, which is unsubstituted or once, twice or three
times substituted by fluoro or C.sub.1-6alkyl; or
phenyl-C.sub.xH.sub.2x--;
[0155] x is 1-6;
[0156] or a pharmaceutically acceptable salt, or an enantiomer
thereof, or a diastereomer thereof;
##STR00002##
[0157] wherein
[0158] R.sup.1 is C.sub.1-6alkyl, C.sub.3-7cycloalkyl,
haloC.sub.1-6alkyl, hydroxyC.sub.1-6alkyl, nitroC.sub.1-6alkyl,
C.sub.1-6alkoxycarbonylC.sub.1-6alkyl, carboxyC.sub.1-6alkyl,
di(C.sub.1-6alkoxycarbonyl)methylenyl, cyanoC.sub.1-6alkyl,
C.sub.3-7cycloalkylC.sub.1-6alkyl, phenylC.sub.1-6alkyl,
C.sub.1-6alkylsulfanylC.sub.1-6alkyl,
C.sub.1-6alkylsufonylC.sub.1-6alkyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylcarbonylaminoC.sub.1-6alkyl,
C.sub.1-6alkylsufonylaminoC.sub.1-6alkyl, C.sub.1-6alkoxycarbonyl
aminoC.sub.1-6alkyl, aminocarbonylC.sub.1-6alkyl,
diC.sub.1-6alkylaminocarbonylC.sub.1-6alkyl, monocyclic
heterocycloalkylC.sub.1-6alkyl or imidazolylC.sub.1-6alkyl;
[0159] R.sup.2 is aryl or heteroaryl, said aryl or heteroaryl being
unsubstituted, or substituted by one, two, three or four
substituents independently selected from C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, halogen, haloC.sub.1-6alkyl, cyano, nitro,
hydroxy, haloC.sub.1-6alkoxy, --O--C.sub.xH.sub.2x--R.sup.3,
--O--C.sub.yH.sub.2y--NHR.sup.6, --NR.sup.9R.sup.19,
--SO.sub.2--R.sup.11, --SO.sub.2--NR.sup.12R.sup.13, carboxy,
C.sub.1-6alkoxycarbonyl, --C(.dbd.O)--NR.sup.12R.sup.13, aryl,
heteroaryl, monocyclic heterocycloalkyl and --O-monocyclic
heterocycloalkyl; wherein monocyclic heterocycloalkyl is
unsubstituted or substituted by C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, C.sub.1-6alkylcarbonyl, C.sub.1-6alkylsufonyl
or C.sub.1-6alkoxycarbonyl;
[0160] R.sup.3 is hydrogen; C.sub.3-7cycloalkyl;
haloC.sub.3-7cycloalkyl; hydroxy;
hydroxyC.sub.1-6alkylC.sub.3-7cycloalkyl; C.sub.1-6alkoxy;
monocyclic heterocycloalkyl; monocyclic heterocycloalkyl
substituted by C.sub.1-6alkyl, C.sub.1-6alkylcarbonyl,
C.sub.1-6alkylsufonyl, C.sub.3-7cycloalkyl or
C.sub.1-6alkoxycarbonyl; --C(.dbd.O)--R.sup.4;
C.sub.1-6alkylsulfinyl; --SO.sub.2--R.sup.5;
--C(NHR.sup.7)--C(.dbd.O)--R.sup.8; carboxyC.sub.1-6alkoxy or
aminocarbonylC.sub.1-6alkoxy; wherein
[0161] R.sup.4 is hydroxy, C.sub.1-6alkoxy, amino,
C.sub.1-6alkylamino, tetrahydrofuranylamino, pyrrolidinyl or
morpholinyl;
[0162] R.sup.5 is C.sub.1-6alkyl, C.sub.3-7cycloalkyl, hydroxy,
amino, C.sub.1-6alkylamino or diC.sub.1-6alkylamino;
[0163] R.sup.7 is hydrogen or C.sub.1-6alkoxycarbonyl;
[0164] R.sup.8 is hydroxy or C.sub.1-6alkoxy;
[0165] R.sup.6 is hydrogen, C.sub.1-6alkylcarbonyl,
haloC.sub.1-6alkylcarbonyl, C.sub.1-6alkoxycarbonyl,
[0166] C.sub.1-6alkylsulfonyl, C.sub.3-7cycloalkylsulfonyl or
C.sub.1-6alkoxyC.sub.1-6alkylsulfonyl;
[0167] R.sup.9 and R.sup.19 are independently selected from
hydrogen, C.sub.1-6alkyl, C.sub.3-7cycloalkyl,
C.sub.1-6alkylcarbonyl, C.sub.1-6alkylsulfonyl,
C.sub.3-7cycloalkylcarbonyl and C.sub.3-7cycloalkylsulfonyl; or
[0168] R.sup.9 and R.sup.19 together with the nitrogen to which
they are attached form monocyclic heterocycloalkyl;
[0169] R.sup.11 is C.sub.1-6alkyl, haloC.sub.1-6alkyl,
C.sub.3-7cycloalkyl, haloC.sub.3-7cycloalkyl,
hydroxyC.sub.1-6alkyl, C.sub.1-6alkoxyC.sub.1-6alkyl,
haloC.sub.1-6alkoxyC.sub.1-6alkyl,
C.sub.3-7cycloalkylC.sub.1-6alkyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylaminoC.sub.1-6alkyl,
C.sub.1-6alkylcarbonylaminoC.sub.1-6alkyl,
C.sub.1-6alkylsulfonylaminoC.sub.1-6alkyl,
C.sub.1-6alkoxycarbonylaminoC.sub.1-6alkyl,
C.sub.1-6alkylsulfenylC.sub.1-6alkyl,
C.sub.1-6alkylsulfanylC.sub.1-6alkyl or
C.sub.1-6alkylsulfonylC.sub.1-6alkyl;
[0170] R.sup.12 and R.sup.13 are independently selected from
hydrogen, C.sub.1-6alkyl, C.sub.1-6alkoxyC.sub.1-6alkyl,
haloC.sub.1-6alkyl, C.sub.3-7cycloalkyl and
haloC.sub.3-7cycloalkyl; or
[0171] R.sup.12 and R.sup.13 together with the nitrogen to which
they are attached form monocyclic heterocycloalkyl;
[0172] x is 1, 2, 3, 4, 5, 6, 7 or 8;
[0173] y is 1, 2, 3, 4, 5, 6, 7 or 8;
[0174] U, W and Z are independently selected from CH and N;
[0175] one of X and Y is N, and the other one is CH or N;
[0176] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0177] In one aspect of the invention
6-methyl-2-oxo-9-pyrrolidin-1-yl-6,7-dihydrobenzo[a]quinolizine-3-carboxy-
lic acid,
9-fluoro-6-methyl-2-oxo-6,7-dihydrobenzo[a]quinolizine-3-carboxy-
lic acid, and
9,10-difluoro-6-methyl-2-oxo-6,7-dihydrobenzo[a]quinolizine-3-carboxylic
acid are excluded from the compound of formula (I).
[0178] In one particular embodiment of the present invention the
compounds of formulae (I) and (II) are excluded from the inhibitor
of the present invention. Thus, one embodiment of the present
invention relates to the inhibitor of the present invention,
wherein said inhibitor is not a compound according to formula (I)
or (II).
[0179] As described above, the appended examples demonstrate that
the anti-HBV agents DHQ (i.e. a compound of formula (III)) and THP
(i.e. a compound of formula (IV)) effectively bind to PAPD5 and
PAPD7. Thus, it is prioritized in context of the invention that the
inhibitor of the invention is the compound of formula (III) or
(IV):
##STR00003##
[0180] In the appended examples also derivatives of the compounds
of formulae (III) and (IV) having a linker and anchor ligand have
been shown to have binding affinity to PAPD5 and PAPD7. These
derivatives are shown below as formulae (V) and (VI), respectively.
Thus, in one aspect of the present invention the inhibitor of the
invention is the compound of formula (V) or (VI):
##STR00004##
[0181] In context of the present invention the inhibitor of the
invention may be the compound according to formula (I), wherein the
inhibitor is any one of the compounds as defined in items (1)-(19),
below:
[0182] 1. A compound according to formula (I), wherein
[0183] R.sup.1 is hydrogen, fluoro, chloro, bromo, methyl,
methylamino, methoxy or ethoxy;
[0184] R.sup.2 is hydrogen, fluoro, chloro, bromo, methyl, ethyl,
trifluoromethyl, methoxy, ethoxy, propoxy, trifluoromethoxy, cyano,
cyclopropyl, hydroxy or phenylmethyl-O--;
[0185] R.sup.3 is hydrogen, bromo, methyl, propyl, trifluoromethyl,
cyano, phenylmethyl-N(methyl)-, tert-butoxycarbonylpiperazinyl,
hydroxy, methoxy, ethoxy, propoxy, isopropoxy, butoxy, isobutoxy,
difluoromethylmethyl-O--, difluoromethylethyl-O--,
trifluoromethoxy, trifluoromethylmethyl-O--,
trifluoromethylethyl-O--, ethyldifluoromethyl-O--,
vinyldifluoromethyl-O--, propargyl-O--, hydroxymethylpropargyl-O--,
methoxyethyl-O--, methoxypropyl-O--, methoxybutyl-O--,
ethoxyethyl-O--, methoxyethyl-O-ethyl-O--, aminoethyl-O--,
aminopentyl-O--, aminohexyl-O--, aminooctyl-O--,
tert-butoxycarbonylaminopentyl-O--,
tert-butoxycarbonylaminohexyl-O--,
tert-butoxycarbonylaminooctyl-O--, methylcarbonylaminoethyl-O--,
methylcarbonylaminopentyl-O--, methylsulfonylaminoethyl-O--,
methylsulfonylaminopentyl-O--, methylsulfonylethyl-O--,
methylsulfonylpropyl-O--, methylsulfanylpropyl-O--,
cyanopropyl-O--, cyanocyclopropylmethyl-O--, cyclopropylmethyl-O--,
cyclohexylethyl-O--, hydroxyethyl-O--, hydroxypropyl-O--,
hydroxy-dimethylpropyl-O--, hydroxy-difluoropropyl-O--,
hydroxybutyl-O--, hydroxypentyl-O--, hydroxyhexyl-O--,
aminoethyl-O-propyl-O--, ethylamino-ethyl-O-propyl-O--,
imidazolylethyl-O--, pyrazolylpropyl-O--, triazolylpropyl-O--,
morpholinylethyl-O--, morpholinylpropyl-O--,
(2-oxo-pyrrolidinyl)ethyl-O--, (2-oxo-pyrrolidinyl)propyl-O--,
phenylmethyl-O--, phenylethyl-O--, pyrrolidinylethyl-O--,
pyrrolidinylpropyl-O--, pyrrolidinylcarbonylmethyl-O--,
tetrahydropyranylmethyl-O-- or carboxypropyl-O--;
[0186] R.sup.4 is hydrogen, fluoro, chloro, bromo, methyl or
cyano;
[0187] provided that R.sup.1, R.sup.2, R.sup.3 and R.sup.4 are not
hydrogen simultaneously;
[0188] R.sup.5 is hydrogen or methyl;
[0189] R.sup.6 is hydrogen, methyl, ethyl, propyl, isopropyl,
isobutyl, tert-butyl, trifluoromethyl, trifluoromethylmethyl,
cyclopropyl, cyclobutyl, methylcyclopropyl or phenylmethyl; or a
pharmaceutically acceptable salt, or an enantiomer, or a
diastereomer thereof.
[0190] 2. A compound according to formula (I), wherein
[0191] R.sup.1 is hydrogen, halogen, C.sub.1-6alkylamino or
C.sub.1-6alkoxy;
[0192] R.sup.2 is hydrogen, halogen, C.sub.1-6alkyl,
C.sub.1-6alkoxy, C.sub.3-7cycloalkyl, hydroxy or
phenyl-C.sub.xH.sub.2x--O--;
[0193] R.sup.3 is hydrogen;
[0194] halogen;
[0195] C.sub.1-6alkyl;
[0196] cyano;
[0197] phenyl-C.sub.xH.sub.2x--N(C.sub.1-6alkyl)-;
[0198] C.sub.1-6alkoxycarbonylpiperazinyl;
[0199] or R.sup.7--O--, wherein R.sup.7 is hydrogen;
C.sub.1-6alkyl, which is unsubstituted or substituted with one to
three substituents independently selected from fluoro, hydroxy and
C.sub.2-6alkenyl; C.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkoxyC.sub.1-6alkoxyC.sub.1-6alkyl; aminoC.sub.1-8alkyl;
C.sub.1-6alkylcarbonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfanylC.sub.1-6alkyl;
C.sub.1-6alkylsulfonylC.sub.1-6alkyl; cyanoC.sub.1-6alkyl;
C.sub.3-7cycloalkylC.sub.1-6alkyl;
cyanoC.sub.3-7cycloalkylC.sub.1-6alkyl; phenylC.sub.1-6alkyl;
pyrrolidinylcarbonylC.sub.1-6alkyl; C.sub.2-6alkynyl;
hydroxyC.sub.1-6alkylC.sub.2-6alkynyl;
aminoC.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkylaminoC.sub.1-6alkoxyC.sub.1-6alkyl;
carboxyC.sub.1-6alkyl; C.sub.1-6alkoxycarbonylaminoC.sub.1-8alkyl;
heteroarylC.sub.1-6alkyl, wherein heteroaryl is N-containing
monocyclic heteroaryl; or heterocycloalkylC.sub.1-6alkyl, wherein
heterocycloalkyl is monocyclic heterocycloalkyl;
[0200] R.sup.4 is hydrogen, halogen, C.sub.1-6alkyl or cyano;
[0201] provided that R.sup.1, R.sup.2, R.sup.3 and R.sup.4 are not
hydrogen simultaneously;
[0202] R.sup.5 is hydrogen or C.sub.1-6alkyl;
[0203] R.sup.6 is hydrogen; C.sub.1-6alkyl, which is unsubstituted
or once, twice or three times substituted by fluoro;
C.sub.3-7cycloalkyl; C.sub.1-6alkylC.sub.3-7cycloalkyl; or
phenyl-C.sub.xH.sub.2x--;
[0204] x is 1-6;
[0205] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0206] 3. A compound according to formula (I) or according to item
1 or 2, wherein R.sup.1 is hydrogen, fluoro, chloro, bromo,
methylamino, methoxy or ethoxy;
[0207] R.sup.2 is hydrogen, fluoro, chloro, methyl, ethyl, methoxy,
ethoxy, propoxy, cyclopropyl, hydroxy or phenylmethyl-O--;
[0208] R.sup.3 is hydrogen, bromo, methyl, propyl, cyano,
phenylmethyl-N(methyl)-, tert-butoxycarbonylpiperazinyl, hydroxy,
methoxy, ethoxy, propoxy, isopropoxy, butoxy, isobutoxy,
difluoromethylmethyl-O--, difluoromethylethyl-O--,
trifluoromethylmethyl-O--, ethyldifluoromethyl-O--,
vinyldifluoromethyl-O--, propargyl-O--, hydroxymethylpropargyl-O--,
methoxyethyl-O--, methoxypropyl-O--, methoxybutyl-O--,
ethoxyethyl-O--, methoxyethyl-O-ethyl-O--, aminoethyl-O--,
aminopentyl-O--, aminohexyl-O--, aminooctyl-O--,
tert-butoxycarbonylaminopentyl-O--,
tert-butoxycarbonylaminohexyl-O--,
tert-butoxycarbonylaminooctyl-O--, methylcarbonylaminoethyl-O--,
methylcarbonylaminopentyl-O--, methylsulfonylaminoethyl-O--,
methylsulfonylaminopentyl-O--, methylsulfonylethyl-O--,
methylsulfonylpropyl-O--, methylsulfanylpropyl-O--,
cyanopropyl-O--, cyanocyclopropylmethyl-O--, cyclopropylmethyl-O--,
cyclohexylethyl-O--, hydroxyethyl-O--, hydroxypropyl-O--,
hydroxy-dimethylpropyl-O--, hydroxy-difluoropropyl-O--,
hydroxybutyl-O--, hydroxypentyl-O--, hydroxyhexyl-O--,
aminoethyl-O-propyl-O--, ethylamino-ethyl-O-propyl-O--,
imidazolylethyl-O--, pyrazolylpropyl-O--, triazolylpropyl-O--,
morpholinylethyl-O--, morpholinylpropyl-O--,
(2-oxo-pyrrolidinyl)ethyl-O--, (2-oxo-pyrrolidinyl)propyl-O--,
phenylmethyl-O--, phenylethyl-O--, pyrrolidinylethyl-O--,
pyrrolidinylpropyl-O--, pyrrolidinylcarbonylmethyl-O--,
tetrahydropyranylmethyl-O-- or carboxypropyl-O--;
[0209] R.sup.4 is hydrogen, chloro, bromo, methyl or cyano;
[0210] provided that R.sup.1, R.sup.2, R.sup.3 and R.sup.4 are not
hydrogen simultaneously;
[0211] R.sup.5 is hydrogen or methyl;
[0212] R.sup.6 is hydrogen, methyl, ethyl, propyl, isopropyl,
isobutyl, tert-butyl, trifluoromethyl, trifluoromethylmethyl,
cyclopropyl, cyclobutyl, methylcyclopropyl or phenylmethyl; or a
pharmaceutically acceptable salt, or enantiomer, or a diastereomer
thereof.
[0213] 4. A compound according to formula (I) or item 2, wherein
the compound is the compound of formula (IA):
##STR00005##
[0214] wherein
[0215] R.sup.1 is hydrogen, halogen or C.sub.1-6alkoxy;
[0216] R.sup.2 is hydrogen, halogen, C.sub.1-6alkyl,
C.sub.1-6alkoxy, C.sub.3-7cycloalkyl, hydroxy or
phenyl-C.sub.xH.sub.2x--O--;
[0217] R.sup.4 is hydrogen or halogen;
[0218] R.sup.5 is hydrogen or C.sub.1-6alkyl;
[0219] R.sup.5 is hydrogen; C.sub.1-6alkyl, which is unsubstituted
or once, twice or three times substituted by fluoro;
C.sub.3-7cycloalkyl; C.sub.1-6alkylC.sub.3-7cycloalkyl; or
phenyl-C.sub.xH.sub.2x--;
[0220] R.sup.7 is hydrogen; C.sub.1-6alkyl, which is unsubstituted
or substituted with one to three substituents independently
selected from fluoro, hydroxy and ethenyl;
C.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkoxyC.sub.1-6alkoxyC.sub.1-6alkyl; aminoC.sub.1-6alkyl;
C.sub.1-6alkylcarbonylaminoC.sub.1-6alkyl;
C.sub.1-6alkylsulfonylaminoC.sub.1-6alkyl;
C.sub.1-6alkylsulfanylC.sub.1-6alkyl;
C.sub.1-6alkylsulfonylC.sub.1-6alkyl; cyanoC.sub.1-6alkyl;
C.sub.3-7cycloalkylC.sub.1-6alkyl;
cyanoC.sub.3-7cycloalkylC.sub.1-6alkyl; phenylC.sub.1-6alkyl;
pyrrolidinylcarbonylC.sub.1-6alkyl; C.sub.2-6alkynyl;
hydroxyC.sub.1-6alkylC.sub.2-6alkynyl;
aminoC.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkylaminoC.sub.1-6alkoxyC.sub.1-6alkyl;
carboxyC.sub.1-6alkyl; C.sub.1-6alkoxycarbonylaminoC.sub.1-8alkyl;
heteroarylC.sub.1-6alkyl, wherein heteroaryl is N-containing
monocyclic heteroaryl; or heterocycloalkylC.sub.1-6alkyl, wherein
heterocycloalkyl is monocyclic heterocycloalkyl;
[0221] x is 1-6;
[0222] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0223] 5. A compound according to item 4, wherein
[0224] R.sup.1 is hydrogen, fluoro, chloro or methoxy;
[0225] R.sup.2 is hydrogen, fluoro, chloro, methyl, ethyl, methoxy,
ethoxy, propoxy, cyclopropyl, hydroxy or phenylmethyl-O--;
[0226] R.sup.4 is hydrogen or chloro;
[0227] R.sup.5 is hydrogen or methyl;
[0228] R.sup.6 is hydrogen, methyl, ethyl, propyl, isopropyl,
isobutyl, tert-butyl, trifluoromethyl, trifluoromethylmethyl,
cyclopropyl, cyclobutyl, methylcyclopropyl or phenylmethyl;
[0229] R.sup.7 is hydrogen, methyl, ethyl, propyl, isopropyl,
butyl, isobutyl, difluoromethylmethyl, difluoromethylethyl,
trifluoromethylmethyl, ethyldifluoromethyl, vinyldifluoromethyl,
propargyl, hydroxymethylpropargyl, methoxyethyl, methoxypropyl,
methoxybutyl, ethoxyethyl, methoxyethyl-O-ethyl, aminoethyl,
aminopentyl, aminohexyl, aminooctyl,
tert-butoxycarbonylaminopentyl, tert-butoxycarbonylaminohexyl,
tert-butoxycarbonylaminooctyl, methylcarbonylaminoethyl,
methylcarbonylaminopentyl, methylsulfonylaminoethyl,
methylsulfonylaminopentyl, methylsulfonylethyl,
methylsulfonylpropyl, methylsulfanylpropyl, cyanopropyl,
cyanocyclopropylmethyl, cyclopropylmethyl, cyclohexylethyl,
hydroxyethyl, hydroxypropyl, hydroxy-dimethylpropyl,
hydroxy-difluoropropyl, hydroxybutyl, hydroxypentyl, hydroxyhexyl,
aminoethyl-O-propyl, ethylamino-ethyl-O-propyl-, imidazolylethyl,
pyrazolyipropyl, triazolylpropyl, morpholinylethyl,
morpholinylpropyl, (2-oxo-pyrrolidinyl)ethyl,
(2-oxo-pyrrolidinyl)propyl, phenylmethyl, phenylethyl,
pyrrolidinylethyl, pyrrolidinylpropyl, pyrrolidinylcarbonylmethyl,
tetrahydropyranylmethyl or carboxypropyl;
[0230] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0231] 6. A compound according to item 4, wherein
[0232] R.sup.1 is hydrogen or halogen;
[0233] R.sup.2 is C.sub.1-6alkyl, halogen or
C.sub.3-7cycloalkyl;
[0234] R.sup.4 is hydrogen;
[0235] R.sup.5 is hydrogen or C.sub.1-6alkyl;
[0236] R.sup.6 is C.sub.1-6alkyl or
C.sub.1-6alkylC.sub.3-7cycloalkyl;
[0237] R.sup.7 is C.sub.1-6alkyl, C.sub.1-6alkoxyC.sub.1-6alkyl; or
phenylC.sub.1-6alkyl;
[0238] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0239] 7. A compound according to item 6, wherein
[0240] R.sup.1 is hydrogen, fluoro or chloro;
[0241] R.sup.2 is methyl, ethyl, fluoro, chloro or cyclopropyl;
[0242] R.sup.4 is hydrogen;
[0243] R.sup.5 is hydrogen or methyl;
[0244] R.sup.6 is methyl, ethyl, isopropyl, isobutyl, tert-butyl or
methylcyclopropyl;
[0245] R.sup.7 is methyl, ethyl, methoxyethyl, methoxypropyl or
phenylmethyl;
[0246] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0247] 8. A compound according to item 4, wherein wherein
[0248] R.sup.1 is hydrogen;
[0249] R.sup.2 is C.sub.1-6alkoxy;
[0250] R.sup.4 is hydrogen or halogen;
[0251] R.sup.5 is hydrogen or C.sub.1-6alkyl;
[0252] R.sup.6 is hydrogen; C.sub.1-6alkyl, which is unsubstituted
or once, twice or three times substituted by fluoro;
C.sub.3-7cycloalkyl; C.sub.1-6alkylC.sub.3-7cycloalkyl; or
phenyl-C.sub.xH.sub.2x--;
[0253] R.sup.7 is hydrogen; C.sub.1-6alkyl, which is unsubstituted
or substituted with one to three substituents independently
selected from fluoro, hydroxy and C.sub.2-6alkenyl;
C.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkoxyC.sub.1-6alkoxyC.sub.1-6alkyl; aminoC.sub.1-6alkyl;
C.sub.1-6alkylcarbonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfanylC.sub.1-6alkyl;
C.sub.1-6alkylsulfonylC.sub.1-6alkyl; cyanoC.sub.1-6alkyl;
cyanoC.sub.3-7cycloalkylC.sub.1-6alkyl;
C.sub.3-7cycloalkylC.sub.1-6alkyl; phenylC.sub.1-6alkyl;
pyrrolidinylcarbonylC.sub.1-6alkyl; C.sub.2-6alkynyl;
hydroxyC.sub.1-6alkylC.sub.2-6alkynyl;
aminoC.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkylaminoC.sub.1-6alkoxyC.sub.1-6alkyl;
carboxyC.sub.1-6alkyl; C.sub.1-6alkoxycarbonylaminoC.sub.1-8alkyl;
imidazolylC.sub.1-6alkyl; pyrazolylC.sub.1-6alkyl;
triazolylC.sub.1-6alkyl; morpholinylC.sub.1-6alkyl;
(2-oxo-pyrrolidinyl)C.sub.1-6alkyl; pyrrolidinylC.sub.1-6alkyl; or
tetrahydropyranylC.sub.1-6alkyl;
[0254] x is 1-6;
[0255] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0256] 9. A compound according to item 8, wherein
[0257] R.sup.1 is hydrogen;
[0258] R.sup.2 is methoxy, ethoxy or propoxy;
[0259] R.sup.4 is hydrogen or chloro;
[0260] R.sup.5 is hydrogen or methyl;
[0261] R.sup.6 is hydrogen, methyl, ethyl, propyl, isopropyl,
isobutyl, tert-butyl, trifluoromethyl, trifluoromethylmethyl,
cyclopropyl, cyclobutyl, methylcyclopropyl or phenylmethyl;
[0262] R.sup.7 is hydrogen, methyl, ethyl, propyl, isopropyl,
butyl, isobutyl, difluoromethylmethyl, difluoromethylethyl,
trifluoromethylmethyl, ethyldifluoromethyl, vinyldifluoromethyl,
propargyl, hydroxymethylpropargyl, methoxyethyl, methoxypropyl,
methoxybutyl, ethoxyethyl, methoxyethyl-O-ethyl, aminoethyl,
aminopentyl, aminohexyl, aminooctyl,
tert-butoxycarbonylaminopentyl, tert-butoxycarbonylaminohexyl,
tert-butoxycarbonylaminooctyl, methylcarbonylaminoethyl,
methylcarbonylaminopentyl, methylsulfonylaminoethyl,
methylsulfonylaminopentyl, methylsulfonylethyl,
methylsulfonylpropyl, methylsulfanylpropyl, cyanopropyl,
cyanocyclopropylmethyl, cyclopropylmethyl, cyclohexylethyl,
hydroxyethyl, hydroxypropyl, hydroxy-dimethylpropyl,
hydroxy-difluoropropyl, hydroxybutyl, hydroxypentyl, hydroxyhexyl,
aminoethyl-O-propyl, ethylamino-ethyl-O-propyl-, imidazolylethyl,
pyrazolylpropyl, triazolylpropyl, morpholinylethyl,
morpholinylpropyl, (2-oxo-pyrrolidinyl)ethyl,
(2-oxo-pyrrolidinyl)propyl, phenylmethyl, phenylethyl,
pyrrolidinylethyl, pyrrolidinylpropyl, pyrrolidinylcarbonylmethyl,
tetrahydropyranylmethyl or carboxypropyl;
[0263] or a pharmaceutically acceptable salt, or enantiomer, or a
diastereomer thereof.
[0264] 10. A compound according to item 4, wherein
[0265] R.sup.1 is hydrogen or halogen;
[0266] R.sup.2 is halogen, C.sub.1-6alkyl, C.sub.1-6alkoxy or
C.sub.3-7cycloalkyl;
[0267] R.sup.4 is hydrogen;
[0268] R.sup.5 is hydrogen or C.sub.1-6alkyl;
[0269] R.sup.6 is C.sub.1-6alkyl, which is unsubstituted or once,
twice or three times substituted by fluoro;
[0270] C.sub.3-7cycloalkyl or
C.sub.1-6alkylC.sub.3-7cycloalkyl;
[0271] R.sup.7 is C.sub.1-6alkyl, which is unsubstituted or
substituted with one to three substituents independently selected
from fluoro and hydroxy; C.sub.1-6alkoxyC.sub.1-6alkyl;
aminoC.sub.1-8alkyl; C.sub.1-6alkylcarbonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfonylaminoC.sub.1-8alkyl;
C.sub.1-6alkylsulfanylC.sub.1-6alkyl;
C.sub.1-6alkylsulfonylC.sub.1-6alkyl;
C.sub.3-7cycloalkylC.sub.1-6alkyl; phenylC.sub.1-6alkyl;
C.sub.1-6alkylaminoC.sub.1-6alkoxyC.sub.1-6alkyl;
C.sub.1-6alkoxycarbonylaminoC.sub.1-8alkyl;
morpholinylC.sub.1-6alkyl or tetrahydropyranylC.sub.1-6alkyl; or a
pharmaceutically acceptable salt, or enantiomer, or a diastereomer
thereof.
[0272] 11. A compound according to item 10, wherein
[0273] R.sup.1 is hydrogen, fluoro, or chloro;
[0274] R.sup.2 is fluoro, chloro, methyl, ethyl, methoxy, ethoxy or
cyclopropyl;
[0275] R.sup.4 is hydrogen;
[0276] R.sup.5 is hydrogen or methyl;
[0277] R.sup.6 is methyl, ethyl, isopropyl, isobutyl, tert-butyl,
trifluoromethylmethyl, cyclobutyl or methylcyclopropyl;
[0278] R.sup.7 is methyl, ethyl, propyl, butyl, isobutyl,
cyclopropylmethyl, difluoromethylmethyl, difluoroethylmethyl,
difluoromethylethyl, trifluoromethylmethyl, ethyldifluoromethyl,
methoxyethyl, methoxypropyl, ethoxyethyl, aminohexyl, aminooctyl,
tert-butoxycarbonylaminopentyl, tert-butoxycarbonylaminooctyl,
methylcarbonylaminopentyl, methylsulfonylaminopentyl,
methylsulfonylpropyl, methylsulfanylpropyl, hydroxypropyl,
hydroxy-dimethylpropyl, hydroxy-difluoropropyl, hydroxybutyl,
hydroxypentyl, hydroxyhexyl, ethylamino-ethyl-O-propyl-,
morpholinylethyl, morpholinylpropyl, phenylmethyl or
tetrahydropyranylmethyl; or a pharmaceutically acceptable salt, or
enantiomer, or a diastereomer thereof.
[0279] 12. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.1 is hydrogen.
[0280] 13. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.2 is halogen or C.sub.1-6alkoxy.
[0281] 14. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.2 is chloro or methoxy.
[0282] 15. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.5 is hydrogen.
[0283] 16. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.6 is C.sub.1-6alkyl or
C.sub.1-6alkylC.sub.3-7cycloalkyl.
[0284] 17. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.6 is ethyl, isopropyl, tert-butyl or
methylcyclopropyl.
[0285] 18. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.7 is C.sub.1-6alkoxyC.sub.1-6alkyl,
hydroxyC.sub.1-6alkyl or aminoC.sub.1-6alkyl.
[0286] 19. A compound according to formula (I), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer thereof,
wherein R.sup.7 is methoxyethyl, methoxypropyl,
hydroxydimethylpropyl, hydroxybutyl, hydroxypentyl, hydroxyhexyl,
aminobutyl, aminopentyl or aminohexyl.
[0287] In context of the present invention the inhibitor of the
invention may also be the compound according to formula (II),
wherein the inhibitor is any one of the compounds as defined in
items (1)-(20), below:
[0288] 1. A compound according to formula (II), wherein
[0289] R.sup.1 is C.sub.1-6alkyl, C.sub.3-7cycloalkyl,
hydroxyC.sub.1-6alkyl, C.sub.1-6alkoxycarbonylC.sub.1-6alkyl or
carboxyC.sub.1-6alkyl;
[0290] R.sup.2 is phenyl substituted by one, two, three or four
groups independently selected from C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, halogen, haloC.sub.1-6alkyl, cyano, nitro,
hydroxy, haloC.sub.1-6alkoxy, tetrahydrofuranyloxy,
--O--C.sub.xH.sub.2x--R.sup.3, --O--C.sub.yH.sub.2y--NHR.sup.6,
--SO.sub.2--R.sup.11. --SO.sub.2--NR.sup.12R.sup.13, carboxy,
C.sub.1-6alkoxycarbonyl and --C(.dbd.O)--NR.sup.12R.sup.13;
pyridinyl substituted by one, two or three groups independently
selected from halogen, C.sub.1-6alkyl, haloC.sub.1-6alkoxy,
tetrahydropyranyloxy, --O--C.sub.xH.sub.2x--R.sup.3 and
NR.sup.6R.sup.16; or pyrimidinyl substituted by C.sub.1-6alkyl and
diC.sub.1-6alkylamino; wherein
[0291] R.sup.3 is hydrogen, C.sub.3-7cycloalkyl,
haloC.sub.3-7cycloalkyl, hydroxy,
hydroxyC.sub.1-6alkylC.sub.3-7cycloalkyl, C.sub.1-6alkoxy,
oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, thietanyl,
1,1-dioxothietanyl, 1,1-dioxothiolanyl, morpholinyl,
oxopyrrolidinyl, oxomorpholinyl, oxopiperazinyl,
C.sub.1-6alkoxycarbonyloxopiperazinyl, oxoimidazolidinyl,
C.sub.1-6alkylpiperazinyl, C.sub.1-6alkylcarbonylpiperazinyl,
C.sub.1-6alkylsulfonylpiperazinyl,
C.sub.1-6alkoxycarbonylpiperazinyl, azetidinyl,
C.sub.1-6alkylcarbonylazetidinyl, C.sub.1-6alkylsulfonylazetidinyl,
C.sub.1-6alkoxycarbonylazetidinyl, --C(.dbd.O)--R.sup.4,
C.sub.1-6alkylsulfinyl, --SO.sub.2--R.sup.5,
--C(NHR.sup.7)--C(.dbd.O)--R.sup.8, carboxyC.sub.1-6alkoxy or
aminocarbonylC.sub.1-6alkoxy;
[0292] wherein
[0293] R.sup.4 is hydroxy, C.sub.1-6alkoxy, amino,
C.sub.1-6alkylamino, diC.sub.1-6alkylamino, tetrahydrofuranylamino,
pyrrolidinyl or morpholinyl;
[0294] R.sup.5 is C.sub.1-6alkyl, hydroxy or amino;
[0295] R.sup.7 is hydrogen or C.sub.1-6alkoxycarbonyl;
[0296] R.sup.8 is hydroxy or C.sub.1-6alkoxy;
[0297] R.sup.6 is hydrogen, C.sub.1-6alkylcarbonyl,
haloC.sub.1-6alkylcarbonyl, C.sub.1-6alkoxycarbonyl,
C.sub.1-6alkylsulfonyl, C.sub.3-7cycloalkylsulfonyl or
C.sub.1-6alkoxyC.sub.1-6alkylsulfonyl;
[0298] R.sup.9 and R.sup.10 are independently selected from
hydrogen, C.sub.1-6alkyl and C.sub.1-6alkylsulfonyl; or
[0299] R.sup.9 and R.sup.10 together with the nitrogen to which
they are attached form pyrrolidinyl, morpholinyl, piperidinyl,
piperazinyl and oxopiperazinyl;
[0300] R.sup.11 is C.sub.1-6alkyl or
C.sub.1-6alkoxyC.sub.1-6alkyl;
[0301] R.sup.12 and R.sup.13 are independently selected from
hydrogen, C.sub.1-6alkyl and C.sub.1-6alkoxyC.sub.1-6alkyl;
[0302] x is 1, 2, 3, 4, 5, 6, 7 or 8;
[0303] y is 1, 2, 3, 4, 5, 6, 7 or 8;
[0304] U is CH;
[0305] W is CH;
[0306] Z is CH or N;
[0307] X is N;
[0308] Y is N;
[0309] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0310] 2. A compound according to formula (II) or item 1,
wherein
[0311] R.sup.1 is C.sub.1-6alkyl;
[0312] R.sup.2 is phenyl substituted by one, two, three or four
groups independently selected from C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, halogen, haloC.sub.1-6alkyl, cyano, hydroxy,
haloC.sub.1-6alkoxy, tetrahydrofuranyloxy,
--O--C.sub.xH.sub.2x--R.sup.3, --O--C.sub.vH.sub.2y--NHR.sup.6,
--SO.sub.2--NR.sup.12R.sup.13, carboxy, C.sub.1-6alkoxycarbonyl and
--C(.dbd.O)--NR.sup.12R.sup.13; pyridinyl substituted by one, two
or three groups independently selected from halogen,
C.sub.1-6alkyl, haloC.sub.1-6alkoxy, tetrahydropyranyloxy,
--O--C.sub.xH.sub.2x--R.sup.3 and NR.sup.9R.sup.10; or pyrimidinyl
substituted by C.sub.1-6alkyl and diC.sub.1-6alkylamino;
wherein
[0313] R.sup.3 is hydrogen, C.sub.3-7cycloalkyl,
haloC.sub.3-7cycloalkyl, hydroxyC.sub.1-6alkylC.sub.3-7cycloalkyl,
oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, thietanyl,
1,1-dioxothietanyl, 1,1-dioxothiolanyl, oxopyrrolidinyl,
oxomorpholinyl, oxopiperazinyl,
C.sub.1-6alkoxycarbonyloxopiperazinyl, oxoimidazolidinyl,
C.sub.1-6alkylpiperazinyl, C.sub.1-6alkylcarbonylpiperazinyl,
C.sub.1-6alkylsulfonylpiperazinyl,
C.sub.1-6alkoxycarbonylpiperazinyl, azetidinyl,
C.sub.1-6alkylcarbonylazetidinyl. C.sub.1-6alkylsulfonylazetidinyl,
C.sub.1-6alkoxycarbonylazetidinyl, --C(.dbd.O)--R.sup.4,
C.sub.1-6alkylsulfinyl, --SO.sub.2--R.sup.5,
--C(NHR.sup.7)--C(.dbd.O)--R.sup.8 carboxyC.sub.1-6alkoxy or
aminocarbonylC.sub.1-6alkoxy; wherein
[0314] R.sup.4 is hydroxy, C.sub.1-6alkoxy, amino,
C.sub.1-6alkylamino, tetrahydrofuranylamino, or morpholinyl;
[0315] R.sup.5 is C.sub.1-6alkyl, hydroxy or amino;
[0316] R.sup.7 is hydrogen or C.sub.1-6alkoxycarbonyl;
[0317] R.sup.8 is hydroxy or C.sub.1-6alkoxy;
[0318] R.sup.6 is hydrogen, C.sub.1-6alkylcarbonyl,
haloC.sub.1-6alkylcarbonyl, C.sub.1-6alkoxycarbonyl,
[0319] C.sub.3-7cycloalkylsulfonyl or
C.sub.1-6alkoxyC.sub.1-6alkylsulfonyl;
[0320] R.sup.9 and R.sup.13 are independently selected from
hydrogen, C.sub.1-6alkyl and C.sub.1-6alkylsulfonyl; or
[0321] R.sup.9 and R.sup.10 together with the nitrogen to which
they are attached form pyrrolidinyl, morpholinyl, piperazinyl and
oxopiperazinyl;
[0322] R.sup.11 is C.sub.1-6alkoxyC.sub.1-6alkyl;
[0323] R.sup.12 and R.sup.13 are independently selected from
hydrogen, C.sub.1-6alkyl and C.sub.1-6alkoxyC.sub.1-6alkyl;
[0324] x is 1, 2, 3, 4, 5, 6, 7 or 8;
[0325] y is 1, 2, 3, 4, 5, 6, 7 or 8;
[0326] U is CH;
[0327] W is CH;
[0328] Z is N;
[0329] X is N;
[0330] Y is N;
[0331] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0332] 3. A compound according to formula (II), item 1 or item 2,
or a pharmaceutically acceptable salt, or enantiomer, or
diastereomer thereof, wherein R.sup.1 is methyl.
[0333] 4. A compound according to formula (II), item 1 or item 2,
wherein
[0334] R.sup.1 is C.sub.1-6alkyl;
[0335] R.sup.2 is phenyl substituted by one, two, three or four
groups independently selected from C.sub.1-6alkyl,
C.sub.3-7cycloalkyl, halogen, haloC.sub.1-6alkyl, cyano, hydroxy,
haloC.sub.1-6alkoxy, tetrahydrofuranyloxy,
--O--C.sub.xH.sub.2x--R.sup.3, --O--C.sub.vH.sub.2y--NHR.sup.6,
--SO.sub.2--R.sup.11, --SO.sub.2--NR.sup.12R.sup.13, carboxy,
C.sub.1-6alkoxycarbonyl and --C(.dbd.O)--NR.sup.12R.sup.12;
[0336] R.sup.3 is hydrogen, C.sub.3-7cycloalkyl,
haloC.sub.3-7cycloalkyl, hydroxyC.sub.1-6alkylC.sub.3-7cycloalkyl,
oxetanyl, tetrahydrofuranyl, tetrahydropyranyl, thietanyl,
1,1-dioxothietanyl, 1,1-dioxothiolanyl, oxopyrrolidinyl,
oxomorpholinyl, oxopiperazinyl,
C.sub.1-6alkoxycarbonyloxopiperazinyl, oxoimidazolidinyl,
C.sub.1-6alkylpiperazinyl, C.sub.1-6alkylcarbonylpiperazinyl,
C.sub.1-6alkylsulfonylpiperazinyl,
C.sub.1-6alkoxycarbonylpiperazinyl, azetidinyl,
C.sub.1-6alkylcarbonylazetidinyl, C.sub.1-6alkylsulfonylazetidinyl,
C.sub.1-6alkoxycarbonylazetidinyl, --C(.dbd.O)--R.sup.4,
C.sub.1-6alkylsulfinyl, --SO.sub.2--R.sup.5 or
--C(NHR.sup.7)--C(.dbd.O)--R.sup.8;
[0337] wherein
[0338] R.sup.4 is hydroxy, C.sub.1-6alkoxy, amino,
C.sub.1-6alkylamino, tetrahydrofuranylamino, or morpholinyl;
[0339] R.sup.5 is C.sub.1-6alkyl, hydroxy or amino;
[0340] R.sup.7 is hydrogen or C.sub.1-6alkoxycarbonyl;
[0341] R.sup.8 is hydroxy or C.sub.1-6alkoxy;
[0342] R.sup.6 is hydrogen, C.sub.1-6alkylcarbonyl,
haloC.sub.1-6alkylcarbonyl, C.sub.1-6alkoxycarbonyl,
C.sub.3-7cycloalkylsulfonyl or
C.sub.1-6alkoxyC.sub.1-6alkylsulfonyl;
[0343] R.sup.11 is C.sub.1-6alkoxyC.sub.1-6alkyl;
[0344] R.sup.12 and R.sup.13 are independently selected from
hydrogen, C.sub.1-6alkyl and C.sub.1-6alkoxyC.sub.1-6alkyl;
[0345] x is 1, 2, 3, 4, 5 or 6;
[0346] y is 1, 2, 3, 4, 5, 6, 7 or 8;
[0347] U is CH;
[0348] W is CH;
[0349] Z is N;
[0350] X is N;
[0351] Y is N;
[0352] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0353] 5. A compound according to formula (II), or any one of items
1 to 4, wherein
[0354] R.sup.1 is methyl;
[0355] R.sup.2 is phenyl substituted by one, two, three or four
groups independently selected from methyl, cyclopropyl, fluoro,
chloro, iodo, trifluoromethyl, cyano, hydroxy, methoxy,
difluoroethoxy, difluoromethoxy, trifluoroethoxy, trifluoromethoxy,
cyclopropylmethoxy, difluorocyclopropylmethoxy,
hydroxymethylcyclopropylmethoxy, oxetanylethoxy, oxetanylmethoxy,
tetrahydrofuranylethoxy, tetrahydrofuranylmethoxy,
tetrahydropyranylmethoxy, thietanylmethoxy,
(1,1-dioxothietanyl)methoxy, (1,1-dioxothiolanyl)methoxy,
oxopyrrolidinyipropoxy, oxomorpholinyipropoxy,
oxopiperazinylpropoxy, (tert-butoxycarbonyloxopiperazinyl)propoxy,
oxoimidazolidinylpropoxy, methylpiperazinylpropoxy,
acetylpiperazinylpropoxy, methylsulfonylpiperazinylpropoxy,
(tert-butoxycarbonylpiperazinyl)propoxy, azetidinylethoxy,
acetylazetidinylethoxy, methylsulfonylazetidinylethoxy,
(tert-butoxycarbonylazetidinyl)ethoxy,
(tert-butoxycarbonylazetidinyl)methoxy, carboxybutoxy,
carboxyethoxy, carboxyhexyloxy, carboxymethoxy, carboxypropoxy,
methoxycarbonylbutoxy, ethoxycarbonylhexyloxy, aminocarbonylbutoxy,
am inocarbonylhexyloxy, am inocarbonylmethoxy,
aminocarbonylpropoxy, methylaminocarbonylpropoxy,
tetrahydrofuranylaminocarbonylmethoxy, morpholinylcarbonylmethoxy,
methylsulfinylpropoxy, methylsulfonylpropoxy, sulfopropoxy,
aminosulfonylpropoxy, amino-carboxy-propoxy,
(tert-butoxycarbonylamino)-carboxy-propoxy,
(tert-butoxycarbonylamino)-(methoxycarbonyl)-propoxy, aminopropoxy,
aminopentoxy, aminohexyloxy, aminooctyloxy,
methylcarbonylaminopropoxy, chloropropylcarbonylaminopropoxy,
(tert-butoxycarbonylamino)hexyloxy,
(tert-butoxycarbonylamino)octyloxy,
(tert-butoxycarbonylamino)pentoxy,
(tert-butoxycarbonylamino)propoxy, cyclopropylsulfonylaminopropoxy,
methoxyethylsulfonylaminopropoxy, methoxypropylsulfonyl,
methoxypropylaminosulfonyl, N-methoxypropyl-N-methyl-aminosulfonyl,
carboxy, methoxycarbonyl, methoxypropylaminocarbonyl,
N-methoxypropyl-N-methyl-aminocarbonyl and
tetrahydrofuranyloxy;
[0356] U is CH;
[0357] W is CH;
[0358] Z is N;
[0359] X is N;
[0360] Y is N;
[0361] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0362] 6. A compound according to formula (II) or any one of items
1 to 4, or a pharmaceutically acceptable salt, or enantiomer, or
diastereomer thereof, wherein R.sup.2 is phenyl substituted by one,
two or three groups independently selected from halogen,
C.sub.1-6alkoxy, haloC.sub.1-6alkoxy,
C.sub.3-7cycloalkylC.sub.1-6alkoxy and
haloC.sub.3-7cycloalkylC.sub.1-6alkoxy.
[0363] 7. A compound according to formula (II), or any one of items
1 to 6, or a pharmaceutically acceptable salt, or enantiomer, or
diastereomer thereof, wherein R.sup.2 is phenyl substituted by one,
two or three groups independently selected from fluoro, chloro,
methoxy, difluoroethoxy, trifluoroethoxy, cyclopropylmethoxy and
difluorocyclopropylmethoxy.
[0364] 8. A compound according to formula (II), or any one of items
1, 2 and 4, wherein
[0365] R.sup.1 is C.sub.1-6alkyl;
[0366] R.sup.2 is phenyl substituted by two or three groups
independently selected from halogen, cyano, haloC.sub.1-6alkoxy,
--O--C.sub.xH.sub.2x--R.sup.3 and
--O--C.sub.yH.sub.2y--NHR.sup.6;
[0367] R.sup.3 is hydrogen, C.sub.3-7cycloalkyl,
haloC.sub.3-7cycloalkyl, oxetanyl, tetrahydrofuranyl,
tetrahydropyranyl, C.sub.1-6alkylsulfonylazetidinyl, aminocarbonyl
or C.sub.1-6alkylsulfonyl;
[0368] R.sup.6 is hydrogen or C.sub.1-6alkoxycarbonyl;
[0369] x is 1, 2, 3, 4, 5 or 6;
[0370] y is 1, 2, 3, 4, 5 or 6;
[0371] U is CH;
[0372] W is CH;
[0373] Z is N;
[0374] X is N;
[0375] Y is N;
[0376] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0377] 9. A compound according to formula (II), or any one of items
1 to 5 and 8, wherein
[0378] R.sup.1 is methyl;
[0379] R.sup.2 is phenyl substituted by two or three groups
independently selected from fluoro, chloro, cyano, methoxy,
difluoroethoxy, trifluoroethoxy, cyclopropylmethoxy,
difluorocyclopropylmethoxy, methylsulfonylpropoxy,
aminocarbonylmethoxy, oxetanylmethoxy, oxetanylethoxy,
tetrahydrofuranylmethoxy, tetrahydropyranylmethoxy,
methylsulfonylazetidinylethoxy, aminohexyloxy and
(tert-butoxycarbonylamino)propoxy;
[0380] U is CH;
[0381] W is CH;
[0382] Z is N;
[0383] X is N;
[0384] Y is N;
[0385] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0386] 10. A compound according to formula (II), or item 1 or item
2, wherein
[0387] R.sup.1 is C.sub.1-6alkyl;
[0388] R.sup.2 is pyridinyl substituted by one, two or three groups
independently selected from halogen,
[0389] C.sub.1-6alkyl, haloC.sub.1-6alkoxy, tetrahydropyranyloxy,
--O--C.sub.xH.sub.2x--R.sup.3 and NR.sup.9R.sup.19;
[0390] R.sup.3 is hydrogen, C.sub.3-7cycloalkyl, thietanyl,
tetrahydrofuranyl, tetrahydropyranyl, oxomorpholinyl,
1,1-dioxo-thietanyl, C.sub.1-6alkylcarbonylazetidinyl,
C.sub.1-6alkylsulfonylazetidinyl, --C(.dbd.O)--R.sup.4,
carboxyC.sub.1-6alkoxy or aminocarbonylC.sub.1-6alkoxy; wherein
[0391] R.sup.4 is hydroxy, C.sub.1-6alkoxy or amino;
[0392] R.sup.9 and R.sup.19 are independently selected from
hydrogen, C.sub.1-6alkyl and C.sub.1-6alkylsulfonyl; or
[0393] R.sup.9 and R.sup.10 together with the nitrogen to which
they are attached form pyrrolidinyl, morpholinyl, piperazinyl and
oxopiperazinyl;
[0394] x is 1, 2, 3, 4, 5, 6, 7 or 8;
[0395] U is CH;
[0396] W is CH;
[0397] Z is N;
[0398] X is N;
[0399] Y is N;
[0400] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0401] 11. A compound according to formula (II), or any one of
items 1 to 3 and 10, wherein
[0402] R.sup.1 is methyl;
[0403] R.sup.2 is pyridinyl substituted by one, two or three groups
independently selected from fluoro, chloro, iodo, methoxy, methyl,
difluoroethoxy, tetrahydropyranyloxy, cyclopropylmethoxy,
thietanylmethoxy, tetrahydrofuranylmethoxy,
tetrahydropyranylmethoxy, oxomorpholinylpropoxy,
(1,1-dioxo-thietanyl)methoxy, acetylazetidinylmethoxy,
methylsulfonylazetidinylmethoxy, carboxybutoxy, carboxyheptyloxy,
carboxyhexyloxy, carboxypentyloxy, carboxypropoxy,
methoxycarbonylheptyloxy, aminocarbonylbutoxy,
aminocarbonylheptyloxy, am inocarbonylhexyloxy,
aminocarbonylmethoxy, aminocarbonylpentyloxy, am
inocarbonylpropoxy, carboxymethoxypropoxy,
aminocarbonylmethoxypropoxy, amino, methylamino, dimethylamino,
methylsulfonylamino, pyrrolidinyl, morpholinyl, piperazinyl and
oxopiperazinyl;
[0404] U is CH;
[0405] W is CH;
[0406] Z is N;
[0407] X is N;
[0408] Y is N;
[0409] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0410] 12. A compound according to formula (II), or any one of
items 1 to 3 and 10, or a pharmaceutically acceptable salt, or
enantiomer, or diastereomer thereof, wherein R.sup.2 is pyridinyl
substituted by one, two or three groups independently selected from
halogen, C.sub.1-6alkoxy, haloC.sub.1-6alkoxy, C.sub.1-6alkylamino,
diC.sub.1-6alkylamino, pyrrolidinyl and oxopiperazinyl.
[0411] 13. A compound according to formula (II), or any one of
items 1 to 3, 10 and 11, or a pharmaceutically acceptable salt, or
enantiomer, or diastereomer thereof, wherein R.sup.2 is pyridinyl
substituted by one, two or three groups independently selected from
fluoro, chloro, methoxy, difluoroethoxy, methylamino,
dimethylamino, pyrrolidinyl and oxopiperazinyl.
[0412] 14. A compound according to formula (II), or any one of
items 1, 2 and 10, wherein
[0413] R.sup.1 is C.sub.1-6alkyl;
[0414] R.sup.2 is pyridinyl substituted by two or three groups
independently selected from halogen, haloC.sub.1-6alkoxy,
--O--C.sub.xH.sub.2x--R.sup.3 and NR.sup.9R.sup.15;
[0415] R.sup.3 is hydrogen, tetrahydrofuranyl, tetrahydropyranyl,
oxomorpholinyl or aminocarbonyl;
[0416] R.sup.9 and R.sup.19 are independently selected from
hydrogen and C.sub.1-6alkyl; or
[0417] R.sup.9 and R.sup.15 together with the nitrogen to which
they are attached form pyrrolidinyl and oxopiperazinyl;
[0418] x is 1, 2, 3, 4, 5 or 6;
[0419] U is CH;
[0420] W is CH;
[0421] Z is N;
[0422] X is N;
[0423] Y is N;
[0424] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0425] 15. A compound according to formula (II), or item 1, or item
6, wherein
[0426] R.sup.1 is methyl;
[0427] R.sup.2 is pyridinyl substituted by two or three groups
independently selected from fluoro, chloro, methoxy,
difluoroethoxy, tetrahydrofuranylmethoxy, tetrahydropyranylmethoxy,
oxomorpholinylpropoxy, aminocarbonylhexyloxy, methylamino,
dimethylamino, pyrrolidinyl and oxopiperazinyl;
[0428] U is CH;
[0429] W is CH;
[0430] Z is N;
[0431] X is N;
[0432] Y is N;
[0433] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0434] 16. A compound according to formula (II), or item 1,
wherein
[0435] R.sup.1 is C.sub.1-6alkyl, C.sub.3-7cycloalkyl,
hydroxyC.sub.1-6alkyl, C.sub.1-6alkoxycarbonylC.sub.1-6alkyl, or
carboxyC.sub.1-6alkyl;
[0436] R.sup.2 is phenyl substituted by one, two or three groups
independently selected from halogen, nitro, C.sub.1-6alkylsulfonyl,
--O--C.sub.xH.sub.2x--R.sup.3 and --O--C.sub.yH.sub.2y--NHR.sup.6;
or pyridinyl substituted by two groups independently selected from
halogen, haloC.sub.1-6alkoxy, --O--C.sub.xH.sub.2x--R.sup.3 and
NR.sup.9R.sup.18; wherein
[0437] R.sup.3 is hydrogen, C.sub.3-7cycloalkyl, hydroxy,
C.sub.1-6alkoxy, tetrahydrofuranyl, tetrahydropyranyl, morpholinyl,
--C(.dbd.O)--R.sup.4, --SO.sub.2--R.sup.5 or
aminocarbonylC.sub.1-6alkoxy; wherein
[0438] R.sup.4 is hydroxy, C.sub.1-6alkoxy, amino,
diC.sub.1-6alkylamino or pyrrolidinyl;
[0439] R.sup.5 is C.sub.1-6alkyl;
[0440] R.sup.6 is hydrogen or C.sub.1-6alkylsulfonyl;
[0441] R.sup.9 and R.sup.10 are C.sub.1-6alkyl; or
[0442] R.sup.9 and R.sup.10 together with the nitrogen to which
they are attached form pyrrolidinyl, morpholinyl, piperidinyl and
oxopiperazinyl;
[0443] x is 1, 2, 3, 4, 5 or 6;
[0444] y is 1, 2, 3, 4, 5 or 6;
[0445] U is CH;
[0446] W is CH;
[0447] Z is CH;
[0448] X is N;
[0449] Y is N;
[0450] or a pharmaceutically acceptable salt, or an enantiomer, or
a diastereomer thereof.
[0451] 17. A compound according to formula (II), or item 1, or item
16, or a pharmaceutically acceptable salt, or enantiomer, or
diastereomer thereof, wherein R.sup.1 is C.sub.1-6alkyl.
[0452] 18. A compound according to formula (II), or any one of
items 1, 16 and 17, or a pharmaceutically acceptable salt, or
enantiomer, or diastereomer thereof, wherein R.sup.1 is methyl.
[0453] 19. A compound according to formula (II), or any one of
items 1 and 16 to 18, or a pharmaceutically acceptable salt, or
enantiomer, or diastereomer thereof, wherein R.sup.2 is phenyl
substituted by one, two or three groups independently selected from
halogen and C.sub.1-6alkoxy; or pyridinyl substituted by two groups
independently selected from halogen, diC.sub.1-6alkylamino,
pyrrolidinyl, and oxopiperazinyl.
[0454] 20. A compound according to formula (II), or any one of
items 1, and 16 to 19, or a pharmaceutically acceptable salt, or
enantiomer, or diastereomer thereof, wherein R.sup.2 is phenyl
substituted by one, two or three groups independently selected from
fluoro and methoxy; or pyridinyl substituted by two groups
independently selected from fluoro, dimethylamino, pyrrolidinyl and
oxopiperazinyl.
[0455] As described above, the inhibitor of the present invention
may also be a RNAi molecule against
[0456] PAPD5 and/or PAPD7. Said RNAi molecule may be a siRNA or a
shRNA.
[0457] For example, the inhibitor of the present invention may be a
siRNA that is directed against PAPD5, wherein said siRNA is any one
of the following siRNAs:
[0458] PAPD5 siRNA Pool (L-010011-00-0010; ON-TARGETplus Human
PAPD5):
[0459] siRNA 1 J-010011-05 Target Sequence: CAUCAAUGCUUUAUAUCGA
(SEQ ID NO: 10)
[0460] siRNA 2 J-010011-06 Target Sequence: GGACGACACUUCAAUUAUU
(SEQ ID NO: 11)
[0461] siRNA 3 J-010011-07 Target Sequence: GAUAAAGGAUGGUGGUUCA
(SEQ ID NO: 12)
[0462] siRNA 4 J-010011-08 Target Sequence: GAAUAGACCUGAGCCUUCA
(SEQ ID NO: 13)
[0463] The inhibitor of the present invention may also be a siRNA
that is directed against PAPD7, wherein said siRNA is any one of
the following siRNAs:
[0464] PAPD7 siRNA Pool (L-009807-00-0005; ON-TARGETplus Human
PAPD7):
TABLE-US-00001 siRNA-1-J-009807-05-Target Sequence: (SEQ ID NO: 14)
GGAGUGACGUUGAUUCAGA siRNA-2-J-009807-06-Target Sequence: (SEQ ID
NO: 15) CGGAGUUCAUCAAGAAUUA siRNA-3-J-009807-07-Target Sequence:
(SEQ ID NO: 16) CGGAGUUCAUCAAGAAUUA siRNA-4-J-009807-08-Target
Sequence: (SEQ ID NO: 17) GCGAAUAGCCACAUGCAAU
[0465] Above, target sequences of suitable siRNAs are shown. The
sequences of the corresponding siRNAs are directly complementary to
these target sequences.
[0466] It is envisaged in context of the present invention that (a)
siRNA(s) directed against PAPD5 is combined with (a) siRNA(s)
directed against PAPD7, in order to inhibit expression of both,
PAPD5 and PAPD7.
[0467] The appended examples surprisingly demonstrate that two
anti-HBV agents that are completely different in structure (i.e.
DHQ and THP) have a shared binding site for PAPD5 and PAPD7 or at
least are binding in close proximity to each other. In particular,
selected interaction domains (SIDs) within PAPD5 and PAPD7 have
been identified. SIDs are the amino acid sequences that are shared
by all prey fragments matching the same reference protein.
Therefore, the SIDs correspond to the amino acid regions where the
anti-HBV agents DHQ and THP bind to PAPD5 and PAPD7. Accordingly,
binding to these regions leads to an inhibition of the activity of
PAPD5 and PAPD7, which results in inhibition of propagation of HBV.
Thus, the inhibitor of the invention may be an antibody that
specifically binds to at least one SID of PAPD5 and/or of PAPD7.
Accordingly, the inhibitor of the invention may be an antibody that
specifically binds to the amino acid stretch of any one of SEQ ID
NOs: 7-9. The inhibitor of the invention may also be an antibody
that specifically binds to more than one of the amino acid
stretches of SEQ ID NOs: 7-9.
[0468] Applications
[0469] In context of the present invention it has surprisingly been
shown that the combined inhibition of PAPD5 and PAPD7 leads to a
synergistic effect in the inhibition of HBV propagation. The
appended examples show that reduction of the expression of PAPD5
alone leads to a reduction of the secretion of HBsAg and HBeAg of
around 50%. Reduction of the expression of PAPD7 alone leads to a
reduction of the secretion of HBsAg and HBeAg of not more than 15%.
Simultaneous knock-down of PAPD5 and PAPD7 leads to a synergistic
effect in the reduction of secretion of HBsAg and HBeAg that lies
above the sum of the single knock-downs. Without being bound by
theory, this synergistic effect may be due to a compensatory effect
of PAPD5 and PAPD7 since both proteins have high sequence homology
and same enzymatic functions.
[0470] Therefore, one embodiment of the present invention relates
to a combined preparation comprising an inhibitor of PAPD5 and an
inhibitor of PAPD7 for use in the treatment and/or prevention of a
HBV infection. Thus, the present invention relates to a combined
preparation comprising an inhibitor of PAPD5 and an inhibitor of
PAPD7 for simultaneous or sequential use in the treatment and/or
prevention of a HBV infection. It is envisaged in context of the
invention that said combined preparation is used for treating (e.g.
ameliorating) a HBV infection. The definitions disclosed herein in
connection with the inhibitor of the present invention apply,
mutatis mutandis, to the combined preparation of the present
invention. The combined preparation may comprise a molecule that is
a PAPD5 inhibitor and a separate molecule that is a PAPD7 inhibitor
(e.g. two separate siRNA molecules or two separate small
molecules). These two separate inhibitors may be formulated within
one unit, e.g., within one pill or vial. Alternatively, these two
separate inhibitors may be formulated separately, in separate
units, e.g. separate pills or vials. The two separate inhibitors
may be administered together, (i.e. simultaneously) or separately
(i.e. sequentially) provided that the synergistic effect of the two
inhibitors is achieved. In one aspect of the invention the combined
preparation leads to a reduction of secretion of HBsAg and HBeAg of
at least 50% as compared to the no drug control (i.e. compared to
cells or subjects to which no drug is administrated).
[0471] The present invention also relates to a pharmaceutical
composition for use in the treatment and/or prevention of a HBV
infection, wherein the pharmaceutical composition comprises
[0472] (i) the inhibitor of the invention; or the combined
preparation of the invention; and
[0473] (ii) optionally a pharmaceutically acceptable carrier.
[0474] Accordingly, the present invention relates to a method of
treating and/or preventing a HBV infection, wherein the method
comprises administering an effective amount of the inhibitor of the
invention, the pharmaceutical composition of the invention, or of
the combined preparation of the invention to a subject in need of
such a treatment.
[0475] The inhibitor of the invention, the combined preparation of
the invention, or the pharmaceutical composition of the invention
may be used in a combination therapy. For example, the inhibitor of
the invention, the combined preparation of the invention, or the
pharmaceutical composition of the invention may be combined with
other anti-HBV agents such as interferon alpha-2b, interferon
alpha-2a, and interferon alphacon-1 (pegylated and unpegylated),
ribavirin, lamivudine (3TC), entecavir, tenofovir, telbivudine
(LdT), adefovir, or other emerging anti-HBV agents such as a HBV
RNA replication inhibitor, a HBsAg secretion inhibitor, a HBV
capsid inhibitor, an antisense oligomer (e.g. as described in
WO2012/145697 and WO 2014/179629), a siRNA (e.g. described in WO
2005/014806, WO 2012/024170, WO 2012/2055362, WO 2013/003520, WO
2013/159109, WO 2017/027350 and WO2017/015175), a HBV therapeutic
vaccine, a HBV prophylactic vaccine, a HBV antibody therapy
(monoclonal or polyclonal), or TLR 2, 3, 7, 8 or 9 agonists for the
treatment and/or prophylaxis of HBV.
[0476] The appended examples demonstrate that down regulation of
PAPD5 and/or PAPD7 goes along with a reduction in the production of
HBsAg and HBeAg as well as of intracellular HBV mRNA in HBV
infected cells. These results indicate that the amount and/or
activity of PAPD5 and/or PAPD7 can be used for monitoring
therapeutic success during the treatment of a HBV infection, e.g.
if treatment with an inhibitor of PAPD5 and/or PAPD7 is ongoing or
has been performed. Thus, the present invention relates to a method
for monitoring the therapeutic success during the treatment of a
HBV infection, wherein the method comprises:
[0477] (a) analyzing in a sample obtained from a test subject the
amount and/or activity of PAPD5 and/or PAPD7;
[0478] (b) comparing said amount and/or activity with reference
data corresponding to the amount and/or activity of PAPD5 and/or
PAPD7 of at least one reference subject; and
[0479] (c) predicting therapeutic success based on the comparison
step (b).
[0480] In the monitoring method of the invention the test subject
may be a human being who receives medication for a HBV infection or
has received medication for a HBV infection. The medication may
comprise anti-HBV agents as described above. The medication may
also comprise an inhibitor of PAPD5 and/or PAPD.
[0481] In the monitoring method of the invention the reference data
may correspond to the amount and/or activity of PAPD5 and/or PAPD7
in a sample of at least one reference subject. Said sample may be
blood or a liver biopsy.
[0482] One aspect of the invention relates to the monitoring method
of the invention, wherein the at least one reference subject has a
HBV infection but did not receive medication for a HBV infection;
and wherein in step (c) a decreased amount and/or activity of PAPD5
and/or PAPD7 of the test subject as compared to the reference data
indicates therapeutic success in the treatment of a HBV infection.
For example, said decreased amount and/or activity of PAPD5 and/or
PAPD7 may mean that the amount and/or activity of PAPD5 and/or
PAPD7 in the sample of the test subject is 0 to 90% of the amount
and/or activity of PAPD5 and/or PAPD7 in the sample of the at least
one reference subject. For example, said decreased amount and/or
activity of PAPD5 and/or PAPD7 may be 0 to 80%, preferably 0 to
70%, more preferably 0 to 60%, even more preferably 0 to 50%, even
more preferably 0 to 40%, even more preferably 0 to 30, even more
preferably 0 to 20%, and most preferably 0 to 10% of the amount
and/or activity of PAPD5 and/or PAPD7 in the sample of the at least
one reference subject.
[0483] Another aspect of the invention relates to the monitoring
method of the invention, wherein the at least one reference subject
has a HBV infection and has received medication for a HBV
infection; and wherein in step (c) an identical or similar amount
and/or activity of PAPD5 and/or PAPD7 of the test subject as
compared to the reference data indicates therapeutic success in the
treatment of a HBV infection. A further aspect of the invention
relates to the monitoring method of the invention, wherein the at
least one reference subject does not have a HBV infection; and
wherein in step (c) an identical or similar amount and/or activity
of PAPD5 and/or PAPD7 of the test subject as compared to the
reference data indicates therapeutic success in the treatment of a
HBV infection. An identical or similar amount and/or activity of
PAPD5 and/or PAPD7 may mean that the amount and/or activity of
PAPD5 and/or PAPD7 in the sample of the test subject is 90-110% of
the amount and/or activity of PAPD5 and/or PAPD7 in the sample of
the at least one reference subject. For example, said identical or
similar amount and/or activity of PAPD5 and/or PAPD7 may be 95-105%
of the amount and/or activity of PAPD5 and/or PAPD7 in the sample
of the at least one reference subject.
[0484] Also encompassed by the present invention is a cell or a
non-human animal (e.g. a mouse, rat, ferret or rabbit) with
increased, reduced or absent PAPD5 and/or PAPD7 expression that can
be used for identifying and/or characterizing a compound that
prevents and/or treats (e.g. ameliorates) a HBV infection. For
example, said cell or non-human animal may comprise an exogenous
nucleotide sequence encoding PAPD5 and/or PAPD7, e.g. cloned into
an expression vector and operable linked to an exogenous promoter.
Said cell or non-human animal may overexpress PAPD5 and/or PAPD7,
preferably PAPD5 and PAPD7. Alternatively, said cell or non-human
animal may have a knock-down of PAPD5 and/or PAPD7, preferably of
PAPD5 and PAPD7.
Embodiments of the Invention
[0485] Thus, the present invention relates to the following
items:
[0486] 1. A method for identifying a compound that prevents,
ameliorates and/or inhibits a hepatitis B virus (HBV) infection,
comprising:
[0487] (a) contacting a test compound with
[0488] (a1) PAP associated domain containing 5 (PAPD5) and/or PAP
associated domain containing 7 (PAPD7); or
[0489] (a2) a cell expressing PAPD5 and/or PAPD7;
[0490] (b) measuring the expression and/or activity of PAPD5 and/or
PAPD7 in the presence and absence of said test compound; and
[0491] (c) identifying a compound that reduces the expression
and/or activity of PAPD5 and/or PAPD7 as a compound that prevents,
ameliorates and/or inhibits a HBV infection.
[0492] 2. A method for identifying a compound that prevents,
ameliorates and/or inhibits a HBV infection, comprising:
[0493] (a) contacting a test compound with
[0494] (a1) PAPD5 and/or PAPD7; or
[0495] (a2) a cell expressing PAPD5 and/or PAPD7;
[0496] (b) measuring whether the test compound binds to PAPD5
and/or to PAPD7;
[0497] (c) measuring whether the test compound inhibits propagation
of HBV; and
[0498] (d) identifying a compound that binds to PAPD5 and/or PAPD7
and inhibits propagation of HBV as a compound that prevents,
ameliorates and/or inhibits a HBV infection. 3. The method of item
1 or 2, wherein PAPD5 is the PAPD5 polypeptide or the PAPD5
mRNA.
[0499] 4. The method of item 3, wherein the PAPD5 polypeptide is a
polypeptide comprising or consisting of
[0500] (i) the amino acid sequence of SEQ ID NO: 1 or 2;
[0501] (ii) an amino acid sequence having at least 80% identity to
an amino acid sequence of (i), wherein the polypeptide has poly-A
polymerase function;
[0502] (iii) the amino acid sequence of an enzymatically active
fragment of SEQ ID NO: 1 or 2; or
[0503] (iv) an amino acid sequence having at least 80% identity to
an amino acid sequence of (iii), wherein the polypeptide has poly-A
polymerase function.
[0504] 5. The method of item 3, wherein the PAPD5 mRNA is a
polynucleotide comprising or consisting of
[0505] (i) the nucleotide sequence encoding the amino acid sequence
of SEQ ID NO: 1 or 2;
[0506] (ii) a nucleotide sequence encoding an amino acid sequence
having at least 80% identity to SEQ ID NO: 1 or 2, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function;
[0507] (iii) the nucleotide sequence encoding an enzymatically
active fragment of SEQ ID NO: 1 or 2; or
[0508] (iv) a nucleotide sequence encoding an amino acid sequence
having at least 80% identity to an amino acid sequence of an
enzymatically active fragment of SEQ ID NO: 1 or 2, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function.
[0509] 6. The method of item 1 or 2, wherein PAPD7 is the PAPD7
polypeptide or the PAPD7 mRNA.
[0510] 7. The method of item 6, wherein the PAPD7 polypeptide is a
polypeptide comprising or consisting of
[0511] (i) the amino acid sequence of SEQ ID NO: 3;
[0512] (ii) an amino acid sequence having at least 80% identity to
an amino acid sequence of (i), wherein the polypeptide has poly-A
polymerase function;
[0513] (iii) the amino acid sequence of an enzymatically active
fragment of SEQ ID NO: 3; or
[0514] (iv) an amino acid sequence having at least 80% identity to
an amino acid sequence of (iii), wherein the polypeptide has poly-A
polymerase function.
[0515] 8. The method of item 6, wherein the PAPD7 mRNA is a
polynucleotide comprising or consisting of
[0516] (i) the nucleotide sequence encoding the amino acid sequence
of SEQ ID NO: 3;
[0517] (ii) a nucleotide sequence encoding an amino acid sequence
having at least 80% identity to SEQ ID NO: 3, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function;
[0518] (iii) the nucleotide sequence encoding an enzymatically
active fragment of SEQ ID NO: 3; or
[0519] (iv) a nucleotide sequence encoding an amino acid sequence
having at least 80% identity to an amino acid sequence of an
enzymatically active fragment of SEQ ID NO: 3, wherein the
polynucleotide encodes a polypeptide that has poly-A polymerase
function.
[0520] 9. The method of any one of items 1 to 8, wherein said cell
is a eukaryotic cell.
[0521] 10. The method of any one of items 2 to 9, wherein the
compound that inhibits propagation of HBV inhibits secretion of HBV
surface antigen (HBsAg), inhibits secretion of HBV envelope antigen
(HBeAg), and/or inhibits production of intracellular HBV mRNA or
HBV DNA.
[0522] 11. The method of any one of items 1 to 10, which
additionally comprises the step of comparing the test compound to a
control.
[0523] 12. The method of item 11, wherein in said control an
inactive test compound is used, wherein said inactive test compound
is a compound that:
[0524] (i) does not reduce the expression and/or activity of PAPD5
and/or PAPD7; and/or
[0525] (ii) does not bind to PAPD5 and/or PAPD7 and does not
inhibit propagation of HBV.
[0526] 13. The method of any one of items 1 to 12, wherein said
test compound is a small molecule of a screening library; or
[0527] (ii) a peptide of a phage display library, of an antibody
fragment library, or derived from a cDNA library.
[0528] 14. The method of any one of items 1 and 3 to 13, wherein
the activity of PAPD5 and PAPD7 is the poly-A polymerase
function.
[0529] 15. An inhibitor of PAPD5 and/or PAPD7 for use in treating
and/or preventing a HBV infection, wherein said inhibitor is
[0530] (i) a small molecule that binds to PAPD5 and/or PAPD7;
[0531] (ii) a RNA interference (RNAi) molecule against PAPD5 and/or
PAPD7;
[0532] (iii) an antibody that specifically binds to PAPD5 and/or
PAPD7; or
[0533] (iv) a genome editing machinery, comprising:
[0534] (a) a site-specific DNA nuclease or a polynucleotide
encoding a site-specific DNA nuclease; and
[0535] (b) a guide IRNA or a polynucleotide encoding a guide
IRNA.
[0536] 16. The inhibitor for the use according to item 15,
which
[0537] (i) binds to PAPD5 and/or PAPD7; and/or
[0538] (ii) inhibits expression and/or activity of PAPD5 and/or
PAPD7.
[0539] 17. The inhibitor for the use according to item 15 or 16,
wherein the inhibitor reduces secretion of HBsAg and HBeAg.
[0540] 18. The inhibitor for the use according to any one of items
15 to 17, wherein the inhibitor inhibits development of chronic HBV
infection and/or reduces the infectiousness of a HBV infected
person.
[0541] 19. The inhibitor for the use according to any one of items
15 to 18, wherein the inhibitor is the compound of formula (III) or
(IV):
##STR00006##
[0542] 20. The inhibitor for the use according to any one of items
15 to 18, wherein the inhibitor is an RNAi molecule such as a siRNA
or a shRNA.
[0543] 21. The inhibitor for the use according to any one of items
15 to 18, wherein the inhibitor is an antibody that specifically
binds to the amino acid stretch of any one of SEQ ID NOs: 7-9.
[0544] 22. Combined preparation comprising an inhibitor of PAPD5
and an inhibitor of PAPD7 for simultaneous or sequential use in the
treatment and/or prevention of a HBV infection.
[0545] 23. A pharmaceutical composition for use in the treatment
and/or prevention of a HBV infection, wherein the pharmaceutical
composition comprises
[0546] (i) the inhibitor for the use according to any one of items
15 to 21; or the combined preparation of item 22; and
[0547] (ii) optionally a pharmaceutically acceptable carrier.
[0548] 24. A method for monitoring the therapeutic success during
the treatment of a HBV infection, wherein the method comprises:
[0549] (a) analyzing in a sample obtained from a test subject the
amount and/or activity of PAPD5 and/or PAPD7;
[0550] (b) comparing said amount and/or activity with reference
data corresponding to the amount and/or activity of PAPD5 and/or
PAPD7 of at least one reference subject; and
[0551] (c) predicting therapeutic success based on the comparison
step (b).
[0552] 25. The monitoring method of item 24, wherein the test
subject is a human being who receives medication for a HBV
infection or has received medication for a HBV infection.
[0553] 26. The monitoring method of item 24 or 25, wherein the
reference data corresponds to the amount and/or activity of PAPD5
and/or PAPD7 in a sample of at least one reference subject.
[0554] 27. The monitoring method of any one of items 24 to 26,
wherein the at least one reference subject has a HBV infection but
did not receive medication for a HBV infection; and wherein in step
(c) a decreased amount and/or activity of PAPD5 and/or PAPD7 of the
test subject as compared to the reference data indicates
therapeutic success in the treatment of a HBV infection.
[0555] 28. The monitoring method of item 27, wherein said decreased
amount and/or activity of PAPD5 and/or PAPD7 means that the amount
and/or activity of PAPD5 and/or PAPD7 in the sample of the test
subject is 0 to 90% of the amount and/or activity of PAPD5 and/or
PAPD7 in the sample of the at least one reference subject.
[0556] 29. The monitoring method of any one of items 24 to 26,
wherein the at least one reference subject has a HBV infection and
has received medication for a HBV infection; and wherein in step
(c) an identical or similar amount and/or activity of PAPD5 and/or
PAPD7 of the test subject as compared to the reference data
indicates therapeutic success in the treatment of a HBV
infection.
[0557] 30. The monitoring method of any one of items 24 to 26,
wherein the at least one reference subject does not have a HBV
infection; and wherein in step (c) an identical or similar amount
and/or activity of PAPD5 and/or PAPD7 of the test subject as
compared to the reference data indicates therapeutic success in the
treatment of a HBV infection.
[0558] 31. The monitoring method of item 29 or 30, wherein said
identical or similar amount and/or activity of PAPD5 and/or PAPD7
means that the amount and/or activity of PAPD5 and/or PAPD7 in the
sample of the test subject is 90-110% of the amount and/or activity
of PAPD5 and/or PAPD7 in the sample of the at least one reference
subject.
[0559] Manufacture
[0560] A compound of formula (I) (i.e. a dihydroquinolizinone
compound according to formula (I)) may be synthesized as described
in WO 2015/113990 A1. In brief, a compound of formula (I) may be
prepared by a method comprising the following steps:
[0561] (a) hydrolysis of a compound of formula (A)
##STR00007##
[0562] or
[0563] (b) hydrolysis of a compound of formula (B)
##STR00008##
[0564] wherein R.sup.1 to R.sup.7 and R.sup.9 are defined above
with respect to formula (I) unless otherwise indicated.
[0565] In step (a) and step (b) a base such as lithium hydroxide or
sodium hydroxide can for example be used.
[0566] A compound of formula (II) (i.e. a
tetrahydropyridopyrimidine compound according to formula (II)) may
be synthesized as described in WO2016/177655. In brief, a compound
of formula (II) may be prepared by a method comprising one of the
following steps:
[0567] (a) coupling of a compound of formula (A)
##STR00009##
[0568] with a compound of formula (B)
R.sup.1M (B)
[0569] in the presence of a Lewis acid;
[0570] (b) coupling of a compound of formula (C)
##STR00010##
[0571] with a compound of formula (D)
NHR.sup.9R.sup.10 (D)
[0572] in the presence of a base;
[0573] (c) coupling of a compound of formula (E)
##STR00011##
[0574] with a compound of formula (F)
R.sup.2-L.sup.2 (F);
[0575] wherein R.sup.1, R.sup.2, U, W, X, Y and Z are defined as
above with respect to formula (II); M is H, Mg, Zn or Na; L.sup.1
is F, Cl or Br; and L.sup.2 is F, Cl or Br.
[0576] In step (a), the Lewis acid can for example be
BF.sub.3.Et.sub.2O or Sc(OTf).sub.3;
[0577] In step (b), the base can for example be K.sub.2CO.sub.3 or
DIEA;
[0578] In step (c), the reaction can be carried out in the presence
of a base, and the base can for example be K.sub.2CO.sub.3 or DIEA.
The reaction can also be carried out in the absence of a base.
[0579] Compositions
[0580] As described above, the invention relates to an inhibitor of
PAPD5 and/or PAPD7 for use in treating and/or preventing a HBV
infection; a combined preparation comprising an inhibitor of PAPD5
and an inhibitor of PAPD7 for use in the treatment and/or
prevention of a HBV infection; and a pharmaceutical composition
comprising said inhibitor or said combined preparation. Said
pharmaceutical composition (i.e. medicament) optionally comprises a
pharmaceutically acceptable carrier. Said pharmaceutical
composition may further comprise a therapeutically acceptable
diluent or excipient.
[0581] A typical pharmaceutical composition is prepared by mixing a
PAPD5 inhibitor and/or a PAPD7 inhibitor and a carrier or
excipient. Suitable carriers and excipients are well known to those
skilled in the art and are described in detail in, e.g., Ansel,
Ansel's Pharmaceutical Dosage Forms and Drug Delivery Systems,
Philadelphia: Lippincott, Williams & Wilkins, 2004; Gennaro,
Remington: The Science and Practice of Pharmacy, Philadelphia:
Lippincott, Williams & Wilkins, 2000; and Rowe, Handbook of
Pharmaceutical Excipients, Chicago, Pharmaceutical Press, 2005. The
formulations may also include one or more buffers, stabilizing
agents, surfactants, wetting agents, lubricating agents,
emulsifiers, suspending agents, preservatives, antioxidants,
opaquing agents, glidants, processing aids, colorants, sweeteners,
perfuming agents, flavoring agents, diluents and other known
additives to improve appearance of the drug or aid in the
manufacturing of the pharmaceutical product (i.e., medicament). For
example, the pharmaceutical composition of the invention may be
formulated by mixing an inhibitor of PAPD5 and/or an inhibitor of
PAPD7 at ambient temperature at an appropriate pH, and with the
desired degree of purity, with physiologically acceptable carriers,
i.e., carriers that are non-toxic to recipients at the dosages and
concentrations employed into a suitable administration form. The
pharmaceutical composition of the invention may be sterile.
[0582] The compounds according to the present invention may exist
in the form of their pharmaceutically acceptable salts. The term
"pharmaceutically acceptable salt" refers to conventional
acid-addition salts or base-addition salts that retain the
biological effectiveness and properties of the compounds of the
present invention and are formed from suitable non-toxic organic or
inorganic acids or organic or inorganic bases. Acid-addition salts
include for example those derived from inorganic acids such as
hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric
acid, sulfamic acid, phosphoric acid and nitric acid, and those
derived from organic acids such as p-toluenesulfonic acid,
salicylic acid, methanesulfonic acid, oxalic acid, succinic acid,
citric acid, malic acid, lactic acid, fumaric acid, and the like.
Base-addition salts include those derived from ammonium, potassium,
sodium and, quaternary ammonium hydroxides, such as for example,
tetramethyl ammonium hydroxide. The chemical modification of a
pharmaceutical compound into a salt is a technique well known to
pharmaceutical chemists in order to obtain improved physical and
chemical stability, hygroscopicity, flowability and solubility of
compounds. It is for example described in Bastin, Organic Process
Research & Development 2000, 4, 427-435 or in Ansel, In:
Pharmaceutical Dosage Forms and Drug Delivery Systems, 6th ed.
(1995), pp. 196 and 1456-1457. For example, the pharmaceutically
acceptable salt of the compounds provided herein may be a sodium
salt.
[0583] Compounds contain one or several chiral centers can either
be present as racemates, diastereomeric mixtures, or optically
active single isomers. The racemates can be separated according to
known methods into the enantiomers. Particularly, diastereomeric
salts which can be separated by crystallization are formed from the
racemic mixtures by reaction with an optically active acid such as
e.g. D- or L-tartaric acid, mandelic acid, malic acid, lactic acid
or camphorsulfonic acid.
[0584] The pharmaceutical composition of the invention is
formulated, dosed, and administered in a fashion consistent with
good medical practice. Factors for consideration in this context
include the particular mammal being treated, the clinical condition
of the individual patient, the site of delivery of the agent, the
method of administration, the scheduling of administration, the age
and sex of the patients and other factors known to medical
practitioners. Herein, an "effective amount" (also known as
"(therapeutically) effective dose") means the amount of a compound
that will elicit the biological or medical response of a subject
that is being sought by a medical doctor or other clinician. The
"effective amount" of the inhibitor of the invention, the combined
preparation of the invention, or the pharmaceutical composition of
the invention will be governed by such considerations, and is the
minimum amount necessary to inhibit HBsAg and/or HBeAg. For
example, such amount may be below the amount that is toxic to the
cells of the recipient, or to the mammal as a whole.
[0585] For example, if the PAPD5 inhibitor and/or the PAPD7
inhibitor is/are (a) compound(s) according to formula (I) or (II),
then the pharmaceutically effective amount administered
parenterally per dose may be in the range of about 0.01 to 100
mg/kg, alternatively about 0.01 to 100 mg/kg of patient body weight
per day, with the typical initial range of compound used being 0.3
to 15 mg/kg/day. In another example, if the PAPD5 inhibitor and/or
the PAPD7 inhibitor is/are (a) compound(s) according to formula (I)
or (II), oral unit dosage forms, such as tablets and capsules,
preferably contain from about 0.1 to about 1000 mg.
[0586] The inhibitor of the invention, the combined preparation of
the invention, or the pharmaceutical composition of the invention
may be administered by any suitable means, including oral, topical
(including buccal and sublingual), rectal, vaginal, transdermal,
parenteral, subcutaneous, intraperitoneal, intrapulmonary,
intradermal, intrathecal and epidural and intranasal, and, if
desired for local treatment, intralesional administration.
Parenteral infusions include intramuscular, intravenous,
intraarterial, intraperitoneal, or subcutaneous administration.
[0587] The inhibitor of the invention, the combined preparation of
the invention, or the pharmaceutical composition of the invention
may be administered in any convenient administrative form, e.g.,
tablets, powders, capsules, solutions, dispersions, suspensions,
syrups, sprays, suppositories, gels, emulsions, patches, etc. Such
compositions may contain components conventional in pharmaceutical
preparations, e.g., diluents, carriers, pH modifiers, sweeteners,
bulking agents, and further active agents.
[0588] The inhibitor of the invention, the combined preparation of
the invention, or the pharmaceutical composition of the invention
are useful in the prevention and/or treatment of an HBV invention.
They preferably inhibit secretion of HBsAg and/or HBeAg, most
preferably of HBsAg and HBeAg.
Definitions
[0589] The terms "treatment", "treating", "treats" or the like are
used herein to generally mean obtaining a desired pharmacological
and/or physiological effect. This effect is therapeutic in terms of
partially or completely curing a disease and/or adverse effect
attributed to the disease. The term "treatment" as used herein
covers any treatment of a disease in a subject and includes: (a)
inhibiting the disease, i.e. arresting its development like the
inhibition of increase of HBsAg and/or HBeAg; or (b) ameliorating
(i.e. relieving) the disease, i.e. causing regression of the
disease, like the repression of HBsAg and/or HBeAg production.
Thus, a compound that ameliorates and/or inhibits a HBV infection
is a compound that treats a HBV invention. Preferably, the term
"treatment" as used herein relates to medical intervention of an
already manifested disorder, like the treatment of an already
defined and manifested HBV infection. Herein the term "preventing",
"prevention" or "prevents" relates to a prophylactic treatment,
i.e. to a measure or procedure the purpose of which is to prevent,
rather than to cure a disease. Prevention means that a desired
pharmacological and/or physiological effect is obtained that is
prophylactic in terms of completely or partially preventing a
disease or symptom thereof. Accordingly, herein "preventing a HBV
infection" includes preventing a HBV infection from occurring in a
subject, and preventing the occurrence of symptoms of a HBV
infection.
[0590] For the purposes of the present invention the "subject" (or
"patient") may be a vertebrate. In context of the present
invention, the term "subject" includes both humans and other
animals, particularly mammals, and other organisms. Thus, the
herein provided means and methods are applicable to both human
therapy and veterinary applications. Accordingly, herein the
subject may be an animal such as a mouse, rat, hamster, rabbit,
guinea pig, ferret, cat, dog, chicken, sheep, bovine species,
horse, camel, or primate. Preferably, the subject is a mammal. More
preferably the subject is human.
[0591] The term "hepatitis B virus infection" or "HBV infection" is
commonly known in the art and refers to an infectious disease that
is caused by the hepatitis B virus (HBV) and affects the liver. A
HBV infection can be an acute or a chronic infection. Some infected
persons have no symptoms during the initial infection and some
develop a rapid onset of sickness with vomiting, yellowish skin,
tiredness, dark urine and abdominal pain ("Hepatitis B Fact sheet
N.sup.o 204". who.int. July 2014. Retrieved 4 Nov. 2014). Often
these symptoms last a few weeks and can result in death. It may
take 30 to 180 days for symptoms to begin. In those who get
infected around the time of birth 90% develop a chronic hepatitis B
infection while less than 10% of those infected after the age of
five do ("Hepatitis B FAQs for the Public--Transmission", U.S.
Centers for Disease Control and Prevention (CDC), retrieved
2011-11-29). Most of those with chronic disease have no symptoms;
however, cirrhosis and liver cancer may eventually develop (Chang,
2007, Semin Fetal Neonatal Med, 12: 160-167). These complications
result in the death of 15 to 25% of those with chronic disease
("Hepatitis B Fact sheet N.sup.o 204". who.int. July 2014,
retrieved 4 Nov. 2014). Herein, the term "HBV infection" includes
the acute and chronic hepatitis B infection. The term "HBV
infection" also includes the asymptotic stage of the initial
infection, the symptomatic stages, as well as the asymptotic
chronic stage of the HBV infection.
[0592] Herein, an enzymatically active fragment of SEQ ID NO: 1 or
2 (i.e. of PAPD5) relates to those polypeptides that comprise a
stretch of contiguous amino acid residues of SEQ ID NO: 1 or 2
(i.e. of PAPD5) and that retain a biological activity (i.e.
functionality) of PAPD5, particularly the poly-A polymerase
function. In line with this, herein, an enzymatically active
fragment of SEQ ID NO: 3 (i.e. of PAPD7) relates to those
polypeptides that comprise a stretch of contiguous amino acid
residues of SEQ ID NO: 3 (i.e. of PAPD7) and that retain a
biological activity (i.e. functionality) of PAPD7, particularly the
poly-A polymerase function. Examples for enzymatically active
fragments of PAPD5 and PAPD7 are the nucleotidyltransferase domain
and the Cid1 poly A polymerase.
[0593] Herein, term "polypeptide" includes all molecules that
comprise or consist of amino acid monomers linked by peptide
(amide) bonds. Thus, the term "polypeptide" comprises all amino
acid sequences, such as peptides, oliogopeptides, polypeptides and
proteins. The "polypeptide" described herein may be a naturally
occurring polypeptide or a non-naturally occurring polypeptide. The
non-naturally occurring polypeptide may comprise at least one
mutation (e.g. amino acid substitution, amino acid deletion or
amino acid addition) as compared to the naturally occurring
counterpart. The non-naturally occurring polypeptide may also be
cloned in a vector and/or be operable linked to a promoter that is
not the natural promoter of said polypeptide. Said promoter may be
a constitutively active promoter. The term "amino acid" or
"residue" as used herein includes both L- and D-isomers of the
naturally occurring amino acids as well as of other amino acids
(e.g., non-naturally-occurring amino acids, amino acids which are
not encoded by nucleic acid sequences, synthetic amino acids etc.).
Examples of naturally-occurring amino acids are alanine (Ala; A),
arginine (Arg; R), asparagine (Asn; N), aspartic acid (Asp; D),
cysteine (Cys; C), glutamine (Gin; Q), glutamic acid (Glu; E),
glycine (Gly; G), histidine (His; H), isoleucine (Ile; I), leucine
(Leu; L), lysine (Lys; K), methionine (Met; M), phenylalanine (Phe;
F), proline (Pro; P), serine (Ser; 5), threonine (Thr; T),
tryptophane (Trp; W), tyrosine (Tyr; Y), valine (Val; V).
Post-translationally modified naturally-occurring amino acids are
dehydrobutyrine (Dhb) and labionin (Lab). Examples for
non-naturally occurring amino acids are described above. The
non-naturally occurring polypeptide may comprise one or more
non-amino acid substituents, or heterologous amino acid
substituents, compared to the amino acid sequence of a naturally
occurring form of the polypeptide, for example a reporter molecule
or another ligand, covalently or non-covalently bound to the amino
acid sequence.
[0594] The term "nucleotide sequence" or "polynucleotide" is
commonly known in the art and comprises molecules comprising or
consisting of naturally occurring molecules such as DNA and RNA as
well as nucleic acid analogues such as, e.g., oligonucleotides
thiophosphates, substituted ribo-oligonucleotides, LNA molecules,
PNA molecules, GNA (glycol nucleic acid) molecules, TNA (threose
nucleic acid) molecules, morpholino polynucleotides, or nucleic
acids with modified backbones such as polysiloxane, and
2'-O-(2-methoxy) ethyl-phosphorothioate, or a nucleic acid with
substituents, such as methyl-, thio-, sulphate, benzoyl-, phenyl-,
amino-, propyl-, chloro-, and methanocarbanucleosides, or a
reporter molecule to facilitate its detection. Furthermore, the
term "nucleotide sequence" is to be construed equivalently with the
term "nucleic acid molecule" in context of the present invention
and may inter alia refer to DNA, RNA, PNA or LNA or hybrids thereof
or any modification thereof that is known in the art (see, e.g.,
U.S. Pat. Nos. 5,525,711, 4,711,955, 5,792,608 or EP 302175 for
examples of modifications). Nucleic acid residues comprised by the
nucleic acid sequence described and provided herein may be
naturally occurring nucleic acid residues or artificially produced
nucleic acid residues. Examples for nucleic acid residues are
adenine (A), guanine (G), cytosine (C), thymine (T), uracil (U),
xanthine (X), and hypoxanthine (HX). As understood by the person of
skill in the art, thymine (T) and uracil (U) may be used
interchangeably depending on the respective type of polynucleotide.
For example, as the skilled person is aware of, a thymine (T) as
part of a DNA corresponds to an uracil (U) as part of the
corresponding transcribed mRNA. The polynucleotides described and
provided herein may be single- or double-stranded, linear or
circular, natural or synthetic.
[0595] The nucleotide sequences provided herein may be cloned into
a vector. The term "vector" as used herein includes plasmids,
cosmids, viruses, bacteriophages and other vectors commonly used in
genetic engineering. In a preferred embodiment, these vectors are
suitable for the transformation of cells, like mammalian cells or
yeast cells. Herein, the vector may be an expression vector.
Generally, expression vectors have been widely described in the
literature. They may comprise a selection marker gene and a
replication-origin ensuring replication in the host, a promoter,
and a termination signal for transcription. Between the promoter
and the termination signal there may be at least one restriction
site or a polylinker which enables the insertion of a nucleic acid
sequence desired to be expressed. Non-limiting examples for the
vector into which a nucleotide sequence provided herein may be
cloned are adenoviral, adeno-associated viral (AAV), lentiviral,
HIV-based lentiviral, nonviral minicircle-vectors, or other vectors
for bacterial and eukaryotic expression systems.
[0596] Herein, the term "compound" means any molecule, including
organic molecules such as small molecules, polynucleotides such as
RNAi molecules, polypeptides such as antibodies, and inorganic
compounds. The term "compound" also includes lipids, hormone
analogs, polypeptide ligands, enzymes, receptors, channels, and
antibody conjugates. For example, herein the compound may be an
RNAi molecule against PAPD5 and/or PAPD7, an antibody that
specifically binds to PAPD5 and/or PAPD7, or a small molecule
binding to PAPD5 and/or PAPD7.
[0597] The term "inhibitor" is known in the art and relates to a
compound/substance capable of fully or partially preventing or
reducing the physiologic function (i.e. the activity) of (a)
specific protein(s) (e.g. of PAPD5 and/or PAPD7). Inhibitors are
also known as "antagonists". In the context of the present
invention, the inhibitor of PAPD5 and/or PAPD7 may prevent or
reduce or inhibit or inactivate the physiological activity of PAPD5
and/or PAPD7, respectively, e.g., upon binding of said
compound/substance to PAPD5 and/or PAPD7, respectively. Binding of
an inhibitor/antagonist to PAPD5 and/or PAPD7 may reduce the
enzymatic function of PAPD5 and/or PAPD7 (i.e. the poly-A
polymerase function) or may prevent the binding of an endogenous
activating molecule to PAPD5 and/or PAPD7, and thereby inhibiting
the activity (i.e. function) of these proteins. In the context of
the present invention, an "inhibitor" of PAPD5 and/or PAPD7 may be
capable of preventing the activity/function of PAPD5 and/or PAPD7,
respectively, by preventing or reducing the expression of the PAPD5
and/or PAPD7 gene. Thus, an inhibitor of PAPD5 and/or PAPD7 may
lead to a decreased expression level of PAPD5 and/or PAPD7 (e.g.
decreased level of PAPD5 and/or PAPD7 mRNA, or of PAPD5 and/or
PAPD7 protein) which is reflected in a decreased functionality
(i.e. activity) of PAPD5 and/or PAPD7, wherein said function
comprises the poly-A polymerase function. An inhibitor of PAPD5
and/or PAPD7, in the context of the present invention, accordingly,
may also encompass transcriptional repressors of PAPD5 and/or PAPD7
expression that are capable of reducing the level of PAPD5 and/or
PAPD7. Accordingly, all means and methods that result in a decrease
in activity (which may be the result of a lower expression) or
PAPD5 and/or PAPD7, are to be used as inhibitors of PAPD5 and/or
PAPD7 in accordance with the present invention.
[0598] Herein, the term "RNA interference (RNAi) molecule" refers
to any molecule inhibiting RNA expression or translation. A small
interfering RNA (siRNA) is a double-stranded RNA molecule that, by
binding complementary mRNA after transcription, leads to their
degradation and loss in translation. A small hairpin RNA (shRNA) is
an artificial RNA molecule with a hairpin structure which upon
expression is able to reduce mRNA via the DICER and RNA reducing
silencing complex (RISC). RNAi molecules can be designed on the
base of the RNA sequence of the gene of interest. Corresponding
RNAi can then be synthesized chemically or by in vitro
transcription, or expressed from a vector or PCR product
[0599] The term "small molecule" refers to an organic compound with
a low molecular weight (<900 daltons). Small molecules may help
to regulate a biological process, and have generally a size on the
order of 10.sup.-9 m. Many drugs are small molecules.
[0600] Herein the term "antibody" is used in the broadest sense and
specifically encompasses intact monoclonal antibodies, polyclonal
antibodies, multispecific antibodies (e.g., bispecific antibodies)
formed from at least two intact antibodies, and antibody fragments,
so long as they exhibit the desired biological activity (i.e.
specifically binding to PAPD5 and/or PAPD7). Also human, humanized,
camelized or CDR-grafted antibodies are comprised. "Antibody
fragments" comprise a portion of an intact antibody. The term
"antibody fragments" includes antigen-binding portions, i.e.,
"antigen binding sites" (e.g., fragments, subsequences,
complementarity determining regions (CDRs)) that retain capacity to
bind an antigen (such as PAPD5 and/or PAPD7), comprising or
alternatively consisting of, for example, (i) a Fab fragment, a
monovalent fragment consisting of the VL, VH, CL and CH1 domains;
(ii) a F(ab')2 fragment, a bivalent fragment comprising two Fab
fragments linked by a disulfide bridge at the hinge region; (iii) a
Fd fragment consisting of the VH and CH1 domains; (iv) a Fv
fragment consisting of the VL and VH domains of a single arm of an
antibody, (v) a dAb fragment (Ward; 1989; Nature 341; 544-546),
which consists of a VH domain; and (vi) an isolated complementarity
determining region (CDR). Antibody fragments or derivatives further
comprise F(ab')2, Fv or scFv fragments or single chain
antibodies.
[0601] The phrase "specifically bind(s)" or "bind(s) specifically"
when referring to a binding molecule refers to a binding molecule
(e.g. an antibody) which has intermediate or high binding affinity,
exclusively or predominately, to a target molecule, preferably
PAPD5 and/or PAPD7. The phrase "specifically binds to" refers to a
binding reaction that is determinative of the presence of a target
(preferably the PAPD5 and/or the PAPD7 protein) in the presence of
a heterogeneous population of proteins and other biologics. Thus,
under designated assay conditions, the specified binding molecules
bind preferentially to a particular target (preferably the PAPD5
and/or PAPD7 protein) and do not bind in a significant amount to
other components present in a test sample. Specific binding to a
target protein under such conditions may require a binding molecule
that is selected for its specificity for a particular target
protein. A variety of assay formats may be used to select binding
molecules that are specifically reactive with a particular target
protein. For example, solid-phase ELISA immunoassays,
immunoprecipitation, Biacore and Western blot may be used to
identify binding molecules that specifically react with the PAPD5
and/or PAPD7 protein. The PAPD5 protein is most preferably a
polypeptide that has the amino acid sequence as shown in SEQ ID NO:
1 or 2. However, the PAPD5 protein may also be a polypeptide having
at least 80%, preferably at least 90%, more preferably at least
95%, even more preferably at least 98%, and even more preferably at
least 99% identity to the amino acid sequence of SEQ ID NO: 1 or 2
and being functional, wherein the function is poly-A polymerase
function. The PAPD7 protein is most preferably a polypeptide that
has the amino acid sequence as shown in SEQ ID NO: 3. However, the
PAPD7 protein may also be a polypeptide having at least 80%,
preferably at least 90%, more preferably at least 95%, even more
preferably at least 98%, and even more preferably at least 99%
identity to the amino acid sequence of SEQ ID NO: 3 and being
functional, wherein the function is poly-A polymerase function.
Typically, a specific or selective reaction will be at least twice
background signal or noise and more typically more than 10 times
background. Or, in other words, the phrase "specifically binds to"
refers to a binding reaction that is determinative of the presence
of the target protein (preferably PAPD5 and/or PAPD7) in a
heterogeneous population of proteins and other biologics.
Typically, an antibody which specifically binds to a certain target
(preferably PAPD5 and/or PAPD7) binds to said target with an
association constant (K.sub.a) of at least about 1.times.10.sup.6
M.sup.-1 or 10.sup.7 M.sup.-1, or preferably about 10.sup.8
M.sup.-1 to 10.sup.9 M.sup.-1, or more preferably about 10.sup.10 M
to 10.sup.11 M.sup.-1 or higher. Moreover, an antibody that
specifically binds to a particular target (preferably PAPD5 and/or
PAPD7) preferably binds to this target with an affinity that is at
least two-fold greater than its affinity for binding to a
non-specific target (e.g., BSA, casein) other than the
predetermined target or a closely-related target.
[0602] In context of the present invention, the term "identity" or
"percent identity" means that amino acid or nucleotide sequences
have identities of at least 80%, preferably at least 90%, more
preferably at least 95%, even more preferably at least 98%, and
even more preferably at least 99% identity to the sequences shown
herein, e.g. those of SEQ ID NO: 1, 2, or 3, wherein the higher
identity values are preferred upon the lower ones. In accordance
with the present invention, the term "identity/identities" or
"percent identity/identities" in the context of two or more nucleic
acid or amino acid sequences, refers to two or more sequences that
are the same, or that have a specified percentage of amino acid
residues or nucleotides that are the same (e.g., at least 80%, at
least 90%, at least 95%, at least 98%, or at least 99% identity
with the amino acid sequences of, e.g., SEQ ID NO: 1, 2 or 3, or
with the nucleotide sequences of, e.g., SEQ ID NO: 4, 5 or 6), when
compared and aligned for maximum correspondence over a window of
comparison, or over a designated region as measured using a
sequence comparison algorithm as known in the art, or by manual
alignment and visual inspection.
[0603] Preferably the described identity to exists over a region
that is at least about 50 amino acids, preferably at least 100
amino acids, more preferably at least 400 amino acids, more
preferably at least 500 amino acids, more preferably at least 600
amino acids and most preferably all amino acids in length. In case
of nucleotide sequences, the described identity most preferably
exists over a region that is at least 100 nucleotides, preferably
at least 1,000 nucleotides, more preferably at least 2,000
nucleotides and most preferably all nucleotides in length.
[0604] Those having skills in the art will know how to determine
percent identity between/among sequences using, for example,
algorithms such as those based on CLUSTALW computer program
(Thompson, 1994, Nucl Acids Res, 2: 4673-4680) or FASTDB (Brutlag,
1990, Comp App Biosci, 6: 237-245), as known in the art. Also
available to those having skills in this art are the BLAST and
BLAST 2.0 algorithms (Altschul, 1997, Nucl Acids Res 25: 3389-3402;
Altschul, 1993, J Mol Evol, 36: 290-300; Altschul, 1990, J Mol Biol
215: 403-410). For example, BLAST 2.0, which stands for Basic Local
Alignment Search Tool BLAST (Altschul, 1997, loc. cit.; Altschul,
1993, loc. cit.; Altschul, 1990, loc. cit.), can be used to search
for local sequence alignments. BLAST, as discussed above, produces
alignments of both nucleotide and amino acid sequences to determine
sequence similarity. Because of the local nature of the alignments,
BLAST is especially useful in determining exact matches or in
identifying similar sequences.
[0605] Analogous computer techniques using BLAST (Altschul, 1997,
loc. cit.; Altschul, 1993, loc. cit.; Altschul, 1990, loc. cit.)
are used to search for identical or related molecules in nucleotide
databases such as GenBank or EMBL.
[0606] Herein, the term "measuring" also means "analyzing" or
"determining" (i.e. detecting and/or quantifying). For example, the
term "measuring the expression and/or activity of PAPD5 and/or
PAPD7" means determining the amount of PAPD5 and/or PAPD7
expression and/or activity, for example, determining the amount of
the PAPD5 and/or PAPD7 polypeptide (i.e. protein). Methods for
measuring (i.e. determining) the amount and/or activity of PAPD5
and/or PAPD7 protein are known in the art and described herein
above. Analogously, the term "measuring whether a test compound
binds to PAPD5 and/or PAPD7" means analyzing or determining (i.e.
detecting) whether a test compound binds to PAPD5 and/or PAPD7,
e.g. to the PAPD5 polypeptide (i.e. protein) and/or to the PAPD7
polypeptide (i.e. protein). In line with this, the term "measuring
whether a test compound inhibits propagation of HBV" means
analyzing or determining (i.e. detecting and/or quantifying)
whether a test compound inhibits propagation of HBV.
[0607] As used herein, the term "C.sub.1-6alkyl" alone or in
combination signifies a saturated, linear- or branched chain alkyl
group containing 1 to 6, particularly 1 to 4 carbon atoms, for
example methyl, ethyl, propyl, isopropyl, 1-butyl, 2-butyl,
tert-butyl and the like. Particular "C.sub.1-6alkyl" groups are
methyl, ethyl, isopropyl and tert-butyl.
[0608] The term "C.sub.3-7cycloalkyl", alone or in combination,
refers to a saturated carbon ring containing from 3 to 7 carbon
atoms, particularly from 3 to 6 carbon atoms, for example,
cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl and
the like. Particular "C.sub.3-7cycloalkyl" groups are cyclopropyl,
cyclobutyl, cyclopentyl and cyclohexyl.
[0609] The term "C.sub.2-6alkenyl" denotes an unsaturated, linear
or branched chain alkenyl group containing 2 to 6, particularly 2
to 4 carbon atoms, for example vinyl, propenyl, allyl, butenyl and
the like. Particular "C.sub.2-6alkenyl" group is allyl and
vinyl.
[0610] The term "C.sub.2-6alkynyl" denotes an unsaturated, linear
or branched chain alkynyl group containing 2 to 6, particularly 2
to 4 carbon atoms, for example ethynyl, 1-propynyl, propargyl,
butynyl and the like. Particular "C.sub.2-6alkynyl" groups are
ethynyl and 1-propynyl.
[0611] The term "C.sub.xH.sub.2x" alone or in combination signifies
a saturated, linear- or branched chain alkyl group containing 1 to
6, particularly 1 to 4 carbon atoms. The term "C.sub.1-6alkoxy"
alone or in combination signifies a group C.sub.1-6alkyl-O--,
wherein the "C.sub.1-6alkyl" is as defined above; for example
methoxy, ethoxy, propoxy, iso-propoxy, n-butoxy, iso-butoxy,
2-butoxy, tert-butoxy, pentoxy, hexyloxy and the like. Particular
"C.sub.1-6alkoxy" groups are methoxy, ethoxy and propoxy.
[0612] The term "halogen" means fluorine, chlorine, bromine or
iodine.
[0613] The term "haloC.sub.1-6alkyl" denotes a C.sub.1-6alkyl group
wherein at least one of the hydrogen atoms of the C.sub.1-6alkyl
group has been replaced by same or different halogen atoms,
particularly fluoro atoms. Examples of haloC.sub.1-6alkyl include
monofluoro-, difluoro- or trifluoro-methyl, -ethyl or -propyl, for
example 3,3,3-trifluoropropyl, 3,3-difluoropropyl, 2-fluoroethyl,
2,2-difluoroethyl, 2,2,2-trifluoroethyl, fluoromethyl,
difluoromethyl or trifluoromethyl. Particular "haloC.sub.1-6alkyl"
group is difluoromethyl or trifluoromethyl.
[0614] The term "haloC.sub.1-6alkoxy" denotes a C.sub.1-6alkoxy
group wherein at least one of the hydrogen atoms of the
C.sub.1-6alkoxy group has been replaced by same or different
halogen atoms, particularly fluoro atoms. Examples of
haloC.sub.1-6alkoxyl include monofluoro-, difluoro- or
trifluoro-methoxy, -ethoxy or -propoxy, for example fluoropropoxy,
difluoropropoxy, trifluoropropoxy, fluoroethoxy, difluoroethoxy,
trifluoroethoxy, fluoromethoxy, difluoromethoxy or
trifluoromethoxy. Particular "haloC.sub.1-6alkoxy" group is
3-fluoropropoxy, 3,3-difluoropropoxy, 3,3,3-trifluoropropoxy,
2-fluoroethoxy, 2,2-difluoroethoxy, 2,2,2-trifluoroethoxy,
fluoromethoxy, difluoromethoxy or trifluoromethoxy.
[0615] The term "C.sub.3-7cycloalkyl", alone or in combination,
refers to a saturated carbon ring containing from 3 to 7 carbon
atoms, particularly from 3 to 6 carbon atoms, for example,
cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl and
the like. Particular "C.sub.3-7cycloalkyl" groups are cyclopropyl,
cyclobutyl, cyclopentyl and cyclohexyl.
[0616] The term "C.sub.1-6alkoxy" alone or in combination signifies
a group C.sub.1-6alkyl-O--, wherein the "C.sub.1-6alkyl" is as
defined above; for example methoxy, ethoxy, propoxy, iso-propoxy,
n-butoxy, iso-butoxy, 2-butoxy, tert-butoxy and the like.
Particular "C.sub.1-6alkoxy" groups are methoxy and ethoxy and more
particularly methoxy.
[0617] The term "haloC.sub.3-7cycloalkyl" denotes a
C.sub.3-7cycloalkyl group wherein at least one of the hydrogen
atoms of the C.sub.3-7cycloalkyl group has been replaced by same or
different halogen atoms, particularly fluoro atoms. Examples of
haloC.sub.3-7cycloalkyl include monofluoro- or
difluoro-cyclopropyl, -cyclobutyl, -cyclopentyl or -cyclohexyl, for
example fluorocyclopropyl, difluorocyclopropyl, fluocyclobutyl,
difluocyclobutyl, fluocyclopentyl, difluocyclopentyl,
fluocyclohexyl or difluocyclohexyl. Particular "haloC.sub.1-6alkyl"
group is difluorocyclopropyl.
[0618] With respect to formula (I) the term "amino", alone or in
combination, refers to primary (--NH.sub.2), secondary (--NH--) or
tertiary amino
##STR00012##
[0619] With respect to formula (II) the term "amino" denotes a
group of the formula --NR'R'' wherein R' and R'' are independently
hydrogen, C.sub.1-6alkyl, C.sub.1-6alkoxy, C.sub.3-7cycloalkyl,
heteroC.sub.3-7cycloalkyl, aryl or heteroaryl. Alternatively, R'
and R'', together with the nitrogen to which they are attached, can
form a heteroC.sub.3-7cycloalkyl.
[0620] The term "carbonyl" alone or in combination refers to the
group --C(O)--.
[0621] The term "cyano" alone or in combination refers to the group
--CN.
[0622] The term "C.sub.1-6alkylsulfinyl" denotes a group
--SO--C.sub.1-6alkyl, wherein C.sub.1-6alkyl group is defined
above. Examples of C.sub.1-6alkylsulfinyl include methylsulfinyl
and ethylsulfinyl.
[0623] The term "C.sub.1-6alkylsulfonyl" denotes a group
--SO.sub.2--C.sub.1-6alkyl, wherein C.sub.1-6alkyl group is defined
above. Examples of C.sub.1-6alkylsulfonyl include methylsulfonyl
and ethylsulfonyl.
[0624] The term "monocyclic heteroaryl" denotes a monovalent
aromatic heterocyclic mono-ring system of 5 to 8 ring atoms,
comprising 1, 2, 3 or 4 heteroatoms selected from N, O and S, the
remaining ring atoms being carbon. Examples of monocyclic
heteroaryl moieties include pyrrolyl, furanyl, thienyl, imidazolyl,
oxazolyl, thiazolyl, triazolyl, oxadiazolyl, thiadiazolyl,
tetrazolyl, pyridinyl, pyrazinyl, pyrazolyl, pyridazinyl,
pyrimidinyl, triazinyl, azepinyl, diazepinyl, isoxazolyl,
isothiazolyl and the like.
[0625] With regard to formula (I) the term "monocyclic
heterocycloalkyl" refers to a monovalent saturated or partly
unsaturated monocyclic ring system of 3 to 7 ring atoms, comprising
1, 2, or 3 ring heteroatoms selected from N, O and S, the remaining
ring atoms being carbon. Examples for monocyclic heterocycloalkyl
are aziridinyl, oxiranyl, azetidinyl, oxetanyl, pyrrolidinyl,
2-oxo-pyrrolidinyl, tetrahydrofuranyl, tetrahydro-thienyl,
pyrazolidinyl, imidazolidinyl, oxazolidinyl, isoxazolidinyl,
thiazolidinyl, piperidinyl, tetrahydropyranyl,
tetrahydrothiopyranyl, piperazinyl, morpholinyl, thiomorpholinyl,
1,1-dioxo-thiomorpholin-4-yl, azepanyl, diazepanyl,
homopiperazinyl, or oxazepanyl. Particular "monocyclic
heterocycloalkyl" groups are morpholinyl, 2-oxo-pyrrolidinyl,
pyrrolidinyl, tetrahydropyranyl, and more particularly
pyrrolidin-1-yl, 2-oxo-pyrrolidin-1-yl, tetrahydropyran-4-yl and
morpholin-1-yl.
[0626] With regard to formula (II) the term "monocyclic
heterocycloalkyl" is a monovalent saturated or partly unsaturated
monocyclic ring system of 4 to 7 ring atoms, comprising 1, 2, or 3
ring heteroatoms selected from N, O and S, the remaining ring atoms
being carbon. Examples for monocyclic heterocycloalkyl are
aziridinyl, oxiranyl, azetidinyl, oxetanyl, pyrrolidinyl,
2-oxo-pyrrolidinyl, tetrahydrofuranyl, thietanyl, pyrazolidinyl,
imidazolidinyl, oxazolidinyl, isoxazolidinyl, thiazolidinyl,
piperidinyl, tetrahydropyranyl, tetrahydrothiopyranyl, piperazinyl,
morpholinyl, 2-oxo-morpholinyl, 2-oxo-piperazinyl, thiomorpholinyl,
1,1-dioxo-thiomorpholin-4-yl, 1,1-dioxothiolanyl,
1,1-dioxothietanyl, oxoimidazolidinyl, azepanyl, diazepanyl,
homopiperazinyl, or oxazepanyl. Particular "monocyclic
heterocycloalkyl" groups are azetidinyl, oxetanyl, thietanyl,
tetrahydrofuranyl, tetrahydropyranyl, 1,1-dioxothietanyl,
1,1-dioxothiolanyl, morpholinyl, pyrrolidinyl, piperidinyl,
piperazinyl, oxoimidazolidinyl, 2-oxo-pyrrolidinyl,
2-oxo-morpholinyl and 2-oxo-piperazinyl. More particularly,
"monocyclic heterocycloalkyl" groups are azetidinyl, pyrrolidinyl,
morpholinyl, oxomorpholinyl, piperidinyl, piperazinyl and
oxopiperazinyl.
[0627] The term "aryl" denotes a monovalent aromatic carbocyclic
mono- or bicyclic ring system comprising 6 to 10 carbon ring atoms.
Examples of aryl moieties include phenyl and naphthyl, Particular
"aryl" is phenyl.
[0628] The term "heteroaryl" denotes a monovalent aromatic
heterocyclic mono- or bicyclic ring system of 5 to 12 ring atoms,
comprising 1, 2, 3 or 4 heteroatoms selected from N, O and S, the
remaining ring atoms being carbon. Examples of heteroaryl moieties
include pyrrolyl, furanyl, thienyl, imidazolyl, oxazolyl,
thiazolyl, triazolyl, oxadiazolyl, thiadiazolyl, tetrazolyl,
pyridinyl, pyrazinyl, pyrazolyl, pyridazinyl, pyrimidinyl,
triazinyl, azepinyl, diazepinyl, isoxazolyl, benzofuranyl,
isothiazolyl, benzothienyl, indolyl, isoindolyl, isobenzofuranyl,
benzimidazolyl, benzoxazolyl, benzoisoxazolyl, benzothiazolyl,
benzoisothiazolyl, benzooxadiazolyl, benzothiadiazolyl,
benzotriazolyl, purinyl, quinolinyl, isoquinolinyl, quinazolinyl,
or quinoxalinyl. Particular "heteroaryl" are pyridinyl and
pyrimidinyl.
[0629] The term "N-containing monocyclic heteroaryl" refers to a
monocyclic heteroaryl wherein at least one of the heteroatoms is N.
Examples for N-containing monocyclic heteroaryl are pyrrolyl,
imidazolyl, oxazolyl, thiazolyl, triazolyl, oxadiazolyl,
thiadiazolyl, tetrazolyl, pyridinyl, pyrazinyl, pyrazolyl,
pyridazinyl, pyrimidinyl, triazinyl, azepinyl, diazepinyl,
isoxazolyl, isothiazolyl and the like. Particular "N-containing
monocyclic heteroaryl" groups are imidazolyl, pyrazolyl and
triazolyl, and more particularly imidazol-1-yl, pyrazol-1-yl and
1,2,4-triazol-1-yl.
[0630] The term "halogen" means fluorine, chlorine, bromine or
iodine. Halogen is particularly fluorine, chlorine or bromine.
[0631] The term "hydroxy" alone or in combination refers to the
group --OH.
##STR00013##
[0632] The term "2-oxo-pyrrolidinyl" alone or in combination refers
to the group.
[0633] The term "sulfonyl" alone or in combination refers to the
group --S(O).sub.2--.
[0634] The term "C.sub.1-6alkylamino" refers to amino group as
defined above wherein at least one of the hydrogen atoms of the
amino group is replaced by a C.sub.1-6alkyl group.
[0635] The term "C.sub.1-6alkylsulfonyl" refers to a group
C.sub.1-6alkyl-S(O).sub.2--, wherein the "C.sub.1-6alkyl" is as
defined above.
[0636] The term "aminocarbonyl" refers to a group amino-C(O)--,
wherein the "amino" is as defined above.
[0637] The term "cyanoC.sub.3-7cycloalkyl" refers to
C.sub.3-7cycloalkyl group as defined above wherein at least one of
the hydrogen atoms of the C.sub.3-7cycloalkyl group is replaced by
a cyano group.
[0638] The term "pyrrolidinylcarbonyl" refers to a group
pyrrolidinyl-C(O)--.
[0639] The term "enantiomer" denotes two stereoisomers of a
compound which are non-superimposable mirror images of one
another.
[0640] The term "diastereomer" denotes a stereoisomer with two or
more centers of chirality and whose molecules are not mirror images
of one another. Diastereomers have different physical properties,
e.g. melting points, boiling points, spectral properties, and
reactivities.
[0641] The present invention is further described by reference to
the non-limiting figures and examples.
[0642] Examples The Examples illustrate the invention.
[0643] Material and Methods
[0644] Compound Chemistry
[0645] Each one compound from the two chemical series DHQ and THP
were synthesized to be suitable for the Y3H screening performed by
HYBRIGENICS SERVICES SAS. Both compounds included PEG5 linker and
were tagged with a Trimethoprim (TMP) anchor ligand (Table 1).
TABLE-US-00002 TABLE 1 TMP-tagged compound IDs Hybrigenics ID
Structure DHQ com- pound- TMP HBX129653 ##STR00014## THP com-
pound- TMP HBX129654 ##STR00015##
[0646] Y3H ULTImate YChemH.TM. Screen
[0647] The two compounds were provided by Roche to HYBRIGENICS
SERVICES SAS and tested for permeability and toxicity. Compounds
were then screened against HYBRIGENICS's cDNA Human placenta
library (PLA). The screens were carried out according to the
optimized cell-to-cell mating protocol developed for Hybrigenics
ULTImate Y2H.TM. using at different compound concentration (Table
2).
TABLE-US-00003 TABLE 2 YChemH screens IDs Hybrigenics YChemH Probe
ID Project YChemH screen Project ID concentration DHQ HBX129653
hgx4240 PLA_RP6_hgx4240v1_pB409_A 5 .mu.M compound THP HBX129654
hgx4241 PLA_RP6_hgx4241v1_pB409_A 10 .mu.M compound
[0648] Y3H ULTImate YChemH.TM. Dependency Assay
[0649] Clones obtained from the screen were picked in 96-well
format and clones positive for growth under selective conditions
(HIS+) were evaluated in a dependency assay using spot assays. Only
clones that were able to grow on selective medium in the presence
of the tagged compound were being picked up, processed (cell lysis,
PCR, gene sequencing) and mapped for protein alignment using Blast
analysis.
[0650] Y3H ULTImate YChemH.TM. 1-by-1 Validation Experiment Prey
Fragments
[0651] In this validation step each one identified fragment prey
and one chemical probe (HBX129653, HBX129654) is tested in a 1-by-1
experiment. The plasmids from 3 selected preys from the screening
library were extracted from the yeast cells, amplified in E. coli
and re-transformed into YHGX13 yeast cells. For each interaction,
DO1, 1/10, 1/100 and 1/1000 of the diploid yeast culture expressing
both hook and prey constructs were spotted on a selective medium
without tryptophan, leucine and histidine and supplemented with the
chemical probe and FK506. Interactions were tested in duplicate.
One plate was used per chemical compound and concentration (DMSO,
5, 10 and 20 .mu.M of HBX129653, 5, 10 and 20 .mu.M of HBX129654, 5
.mu.M of HBX24786 Trimethoprim (TMP) and 5 .mu.M of HBX129634
(TMP-PEG5-OH)). Plates were incubated at 30.degree. C. for 3
days.
[0652] Y3H ULTImate YChemH.TM. 1-by-1 Validation Experiment Full
Length Proteins
[0653] The coding sequence of full-length PAPD5var1 (NM
001040284.2) and PAPD7varX1 (XM_005248234.2) were reconstituted
from an N-terminal codon-optimized gene fragment (to remove high GC
content) and commercially available clones of the C-terminal
regions of the proteins and cloned in frame with the Gal4
Activation Domain (AD) into plasmid pP7 (AD-Prey), derived from the
original pGADGH (Bartel et al., 1993 in Cellular interactions in
development: A practical approach. ed. Hartley, D. A., Oxford
University Press, Oxford, pp. 153-179). The constructs were checked
by sequencing the entire inserts. For each prey, a mini-mating was
carried out between YHGX13 (Y187 ade2-101::loxP-kanMX-IoxP, mato)
transformed with the prey plasmids and YPT6AT yeast cells (mata)
transformed with the DHFR hook (Dihydrofolate reductase) to produce
a diploid yeast culture. For each interaction, DO1, 1/10, 1/100 and
1/1000 of the diploid yeast culture expressing both hook and prey
constructs were spotted on a selective medium without tryptophan,
leucine and histidine and supplemented with the chemical probe and
FK506. Interactions were tested in duplicate. One plate was used
per chemical compound and concentration (DMSO, 5, 10 and 20 .mu.M
of HBX129653, 5, 10 and 20 .mu.M of HBX129654, 5 .mu.M of HBX24786
Trimethoprim (TMP) and 5 .mu.M of HBX129634 (TMP-PEG5-OH)). Plates
were incubated at 30.degree. C. for 3 days.
[0654] Y3H ULTImate YChemH.TM.--Competition with Free Compound
[0655] The competition assay is based on the previously described
1-by-1 validation with a constant concentration for the chemical
probe (HBX129653, HBX 129654) and increasing concentrations of the
parent compound of the chemical probe (MOL653, MOL654) or its
inactive enantiomer (INACT653, INACT654) (Table 3). The competition
assays were performed on selective medium at 8 concentrations of
the free compound (0, 0.25, 0.5, 1, 2, 5, 10 and 20 .mu.M) and a
consistent concentration for the tagged Y3H-compound (1 .mu.M).
TABLE-US-00004 TABLE 3 YChemH competition IDs Hybrigenics ID
Structure DHQ compound- active MOL653 ##STR00016## DHQ compound-
inactive INACT653 ##STR00017## THP compound- active MOL654
##STR00018## THP compound- inactive INACT654 ##STR00019##
[0656] HepaRG Cell Culture
[0657] HepaRG cells (Biopredics International, Rennes, France, Cat
#HPR101) were cultured at 37.degree. C. in a humidified atmosphere
with 5% CO2 in complete HepaRG growth medium consisting of
William's E Medium (GIBCO), Growth Medium Supplement (Biopredics,
Cat #ADD710) and 1% (v/v) GlutaMAX-1 (Gibco #32551) and 1.times.
Pen/Strep (Gibco, #15140) for 2 weeks. To initiate differentiation,
0.9% (v/v) DMSO (Sigma-Aldrich, D2650) was added to the growth
medium on confluent cells. After one week, medium was replaced by
complete differentiation medium (HepaRG growth medium supplemented
with 1.8% (v/v) DMSO) in which cells were maintained for
approximately 4 weeks with differentiation medium renewal every 7
days. Differentiated HepaRG cells (dHepaRG), displayed
hepatocyte-like cell islands surrounded by monolayer of
biliary-like cells. Prior to HBV infection and compound treatment,
dHepaRG cells were seeded into collagen I coated 96-well plates
(Gibco, Cat #A11428-03) at 60,000 cells per well in 100 .mu.L of
complete differentiation medium. Cells were allowed to recover
their differentiated phenotype in 96-well plates for approximately
1 week after plating prior to HBV infection.
[0658] HBV Infection of dHepaRG
[0659] dHepaRG cells were infected with HBV particles at an MOI of
30. The HBV particles were produced from HBV-producing HepG2.2.15
cells (Sells et al 1987 Proc Natl Acad Sci USA 84, 1005-1009).
dHepaRG culture conditions, differentiation and HBV infection have
been described previously (Hantz, 2009, J. Gen. Virol., 2009, 90:
127-135). In brief complete differentiation medium (120 .mu.L/well)
containing 4% PEG-8000 and virus stock (20 to 30 GE/cell) was
added. One day post-infection, the cells were washed three times
with phosphate-buffered saline and medium (complete differentiation
medium) was replaced every two days during the experiment.
[0660] siRNA Treatment of HBV-Infected HepaRG
[0661] A pool of four different siRNAs was acquired from GE
Dharmacon (ON TARGETplus) (Table 4).
TABLE-US-00005 TABLE 4 Overview siRNAs siRNA ON TARGETplus
(Cat.No.) Target Sequence SEQ ID NO siPAPD5 (Cat. No. # J-010011-05
CAUCAAUGCUUUAUAUCGA 10 L-010011-00-0010) J-010011-06
GGACGACACUUCAAUUAUU 11 J-010011-07 GAUAAAGGAUGGUGGUUCA 12
J-010011-08 GAAUAGACCUGAGCCUUCA 13 siPAPD7 (Cat. No. # J-009807-05
GGAGUGACGUUGAUUCAGA 14 L-009807-00-0005) J-009807-06
CGGAGUUCAUCAAGAAUUA 15 J-009807-07 CGGAGUUCAUCAAGAAUUA 16
J-009807-08 GCGAAUAGCCACAUGCAAU 17
[0662] One day before infection with HBV cells and 4 days after
infection cells were treated with siRNA pool either against PAPD5,
PAPD7, both or the non-targeting siRNA as control. The siRNAs were
transfected using DharmaFect 4 (GE Dharmacon; Cat. No. T-2004-01)
and OPTI-MEM (Thermo Scientific; Cat. No. 51985034) according to
manufacturer's protocol. The cells were treated for 11 days.
[0663] HBV Antigen Measurements
[0664] To evaluate the impact on HBV antigen expression and
secretion, supernatants were collected on Day 11. HBV HBsAg and
HBeAg levels were measured using CLIA ELISA Kits (Autobio
Diagnostic #CL0310-2, #CL0312-2), according to the manufacturer's
protocol. Briefly, 25 .mu.L of supernatant per well were
transferred to the respective antibody coated microtiter plate and
25 .mu.L of enzyme conjugate reagent were added. The plate was
incubated for 60 min on a shaker at room temperature before the
wells were washed five times with washing buffer using an automatic
washer. 25 .mu.L of substrate A and B were added to each well. The
plates were incubated on a shaker for 10 min at room temperature
before luminescence was measured using an Envision luminescence
reader (Perkin Elmer).
[0665] Cell Viability
[0666] After the removal of supernatant media from the HBV infected
dHepaRG cells, cells were incubated with CellTiterGlo One Solution
(Promega) to measure cell viability.
[0667] Real-Time PCR for Intracellular mRNA
[0668] For intracellular mRNA isolation, dHepaRG were washed once
with PBS (Gibco) and lysed using the MagNA Pure "96 Cellular RNA
Large Volume Kit" (Roche #05467535001). The lystates may be stored
at at -80.degree. C. For the real-time qPCR reaction an AB7900 HT
sequence detection system (Applied Biosystems), the TaqMan.RTM.
Gene Expression Master Mix (ThermoFisher Scientific) were used. For
detection of HBV mRNA HBV core-specific primer (Integrated DNA
Technologies) (Table 5) and to measure reduction of PAPD5 and
PAPD7, in the presence of siRNA, gene-specific TaqMan Expression
Assay probes (ThermoFisher Scientific; PAPD5 Cat. No. 4331182;
PAPD7 Cat. No. 4331182) were used. Samples were normalized using
TaqMan Expression Assay probe against b-Actin (ThermoFisher
Scientific; PAPD5 Cat. No. 4331182).
TABLE-US-00006 TABLE 5 HBV core specific TaqMan probes Name Dye
Sequence SEQ ID NO HBV Forward CTG TGC CTT GGG TGG CTT T 18 core
(F3_HBVcore) Primer Reverse AAG GAA AGA AGT CAG AAG GCA AAA 19
(R3_HBVcore) Probe FAM- AGC TCC AAA/ZEN/TTC TTT ATA AGG 20
(P3_HBVcore) MGB GTC GAT GTC CAT G
Example 1: DHQ and THP Binds to PAPD5 and PAPD7
[0669] PAPD5/7 were Identified in Y3H Ultimate YChemH Screen as
Common Interaction Partner of DHQ and THP
[0670] Both proteins PAPD5 (variant 1: NP_001035374; variant 2:
NP_001035375) and PAPD7 (XP_005248291) were identified by a
numerous number of fragments in the Y3H screen for both compounds
(DHQ and THP) as described in the Materials and Method section. The
identified proteins were ranked with a confidence score of A (scale
A-D) by HYBRIGENICS (Table 6).
TABLE-US-00007 TABLE 6 YChemH screen results for PAPD5/7
Hybrigenics Protein prey # of Confidence ID identified fragments
score DHQ HBX129653 PAPD5 variant 1 28 A compound PAPD5 variant 2 1
N/A PAPD7 12 A THP HBX129654 PAPD5 variant 1 5 N/A compound PAPD5
variant 2 49 A PAPD7 24 A
[0671] PAPD5/7 Interaction with DHQ and THP could be Confirmed
Using Y3H ULTImate YChemH 1-by-1 Validation of Identified Prey
Fragments and Further with Full Length Proteins
[0672] In a first validation step three fragments identified in the
first screen were selected for the 1-by-1 validation assay (as
described in the Materials and Method section) and tested at three
different concentrations (5, 10 and 20 .mu.M) (Table 7).
TABLE-US-00008 TABLE 7 interacting fragment selected for validation
assay Interaction # Prey fragment ID Protein Prey A
PLA_RP6_hgx4240v1_pB409_A-15 PAPD7 B PLA_RP6_hgx4241v1_pB409_A-112
PAPD5 variant 1 C PLA_RP6_hgx4240v1_pB409_A-24 PAPD5 variant 2
[0673] All three fragments could be validated as specific binders
for DHQ and THP already at the lowest tested concentration (FIG.
1).
[0674] In a second validation step, full length proteins for PAPD5
and PAPD7 were synthesized and used for 1-by-1 validation (as
described in the Materials and Method section) with DHQ and THP
(Table 8).
TABLE-US-00009 TABLE 8 Reference ID for full length protein prey
used in 1-by-1 validation assay Interaction # HYBRIGENICS Reference
Protein Prey A hgx4386v1_pP7 PAPD5 var1 full length B hgx4388v2_pP7
PAPD7 var1 full length
[0675] The interaction between these full length proteins and the
DHQ and THP compounds were confirmed at the lowest tested
concentration and shown to be specific for the chemical probes
(FIG. 2).
[0676] PAPD5/7 Interaction with DHQ and THP in Y3H can be Competed
by Both Free Active Compound, but not the Inactive Enantiomer
[0677] After validation of binding of DHQ and THP to protein
fragments and full length PAPD5 and PAPD7 the binding was confirmed
in a Y3H ULTImate YChenH competition experiment (as described in
the Materials and Method section) using either inactive or active
free compound (Table 9). A decrease of loss of yeast growth in the
presence of the parent active compound, but not in the presence of
the inactive enantiomer, means that the parent compound competes
with the chemical probe and interacts with the protein target.
[0678] For all tested compounds toxicity on non-selective medium at
the highest concentration (20 .mu.M) was tested using CellTiter-Glo
Luminescent Cell Viability Assay (Promega) according to the
manufacturer's protocol. No toxicity was observed at this
concentration for any compound as yeast growth was not affected
(data not shown). For both active free parent compounds (DHQ and
THP, MOL653 and MOL654, respectively) competition could be
observed, with lower concentration needed for competing the binding
to the full length protein than for the fragment interactions (FIG.
3+4). Successful cross competition suggests a shared binding side
for DHQ and THP to PAPD5/7 or at least binding in close proximity
to each other.
TABLE-US-00010 TABLE 9 Reference ID for protein prey used in
competition assay Interaction # Prey fragment ID Protein Prey A
PLA_RP6_hgx4241v1_pB409_A-112 PAPD5 var1 experimental fragment B
hgx4386v1_pP7 PAPD5 var1 full length C PLA_RP6_hgx4240v1_pB409_A-15
PAPD7 varX1 experimental fragment D hgx4388v2_pP7 PAPD7 varX1 full
length
Example 2: Inhibition of PAPD5 and/or PAPD7 with siRNA Results in
Effective Treatment of HBV Infection
[0679] To correlate the binding of DHQ and THP to PAPD5/7 and the
impact of these two proteins on HBV gene expression, we used RNAi
technology to reduce these proteins in naturally HBV infected
dHepaRG and to monitor the impact of this reduction on viral
parameters. For that we used siRNA pools against PAPD5 and PAPD7
(see table 4) in HBV infected dHepaRG cells as described in the
Materials and methods section.
[0680] Reduction of PAPD5 led to inhibition of viral expression
measured by secreted HBsAg and HBeAg as well as intracellular HBV
mRNA (measured using CLIA ELISA and real-time PCR as described in
the Materials and Methods section). While the reduction of PAPD5
mRNA dramatically reduced HBV gene expression, inhibition of PAPD7
had a modest effect on HBV expression (FIG. 7). However, an
enhanced synergistic anti-HBV activity was observed when siRNA
against PAPD7 and PAPD5 were combined (FIG. 7), suggesting a
compensative role for PAPD7 in the absence of PAPD5.
Example 3: DHQ and THP Effectively Reduces HBsAg and HBeAg
[0681] The potency of DHQ and THP and their variants against HBV
infection were measured in HepG2.2.15 cells using HBsAg and HBeAg
as read out.
[0682] HepG2.2.15 cells (Sells et al 1987 Proc Natl Acad Sci USA
84, 1005-1009) were cultured in 96 well plates (15.000 cells/well
in 100 uL) in DMEM+GluTaMax-1 (GiBCO Cat. NO. 10569), 1% Pen Strep
(Gibco Cat. No. 15140), 10% FBS (Clontech Cat. No. 631106),
Geneticin 0.25 ug/ml (Invitrogen 10131035). The compounds were
tested using three-fold serial dilutions in DMSO with a top
concentration of 100 .mu.M and 9 serial dilutions. Each compound
was tested in quadricate. The cells were incubated for 3 days,
supernatants were collected and HBsAg and HBeAg were measured as
described in the Materials and Methods section. The IC.sub.50
values of the tested compounds in the reduction of secretion of
HBsAg and HBeAg are shown in the following:
[0683] HBX129653 (DHQ TMP): IC.sub.50 HBsAg 1.181 uM
[0684] HBX129654 (THP TMP): IC.sub.50 HBsAg 0.299 uM
[0685] MOL653 (DHQ free--active): IC.sub.50 HBsAg 0.003 uM;
IC.sub.50 HBeAg 0.007 uM
[0686] MOL654 (THP free--active): IC.sub.50 HBsAg 0.003 uM
[0687] INACT653 (DHQ free--inactive): IC.sub.50 HBsAg 3.15 uM
[0688] INACT654 (THP free--inactive): IC.sub.50 HBsAg>25 uM
Sequence CWU 1
1
201698PRTHomo sapiens 1Met Arg Pro Arg Pro Arg Ser Ala Pro Gly Lys
Pro Arg Arg Arg Ser1 5 10 15Arg Ala Arg Leu Arg Ser Ser Arg Thr Pro
Ser Gly Gly Ala Ser Gly 20 25 30Gly Gly Gly Ser Ser Ser Ser Ser Ser
Thr Ala Thr Gly Gly Ser Gly 35 40 45Ser Ser Thr Gly Ser Pro Gly Gly
Ala Ala Ser Ala Pro Ala Pro Ala 50 55 60Pro Ala Gly Met Tyr Arg Ser
Gly Glu Arg Leu Leu Gly Ser His Ala65 70 75 80Leu Pro Ala Glu Gln
Arg Asp Phe Leu Pro Leu Glu Thr Thr Asn Asn 85 90 95Asn Asn Asn His
His Gln Pro Gly Ala Trp Ala Arg Arg Ala Gly Ser 100 105 110Ser Ala
Ser Ser Pro Pro Ser Ala Ser Ser Ser Pro His Pro Ser Ala 115 120
125Ala Val Pro Ala Ala Asp Pro Ala Asp Ser Ala Ser Gly Ser Ser Asn
130 135 140Lys Arg Lys Arg Asp Asn Lys Ala Ser Thr Tyr Gly Leu Asn
Tyr Ser145 150 155 160Leu Leu Gln Pro Ser Gly Gly Arg Ala Ala Gly
Gly Gly Arg Ala Asp 165 170 175Gly Gly Gly Val Val Tyr Ser Gly Thr
Pro Trp Lys Arg Arg Asn Tyr 180 185 190Asn Gln Gly Val Val Gly Leu
His Glu Glu Ile Ser Asp Phe Tyr Glu 195 200 205Tyr Met Ser Pro Arg
Pro Glu Glu Glu Lys Met Arg Met Glu Val Val 210 215 220Asn Arg Ile
Glu Ser Val Ile Lys Glu Leu Trp Pro Ser Ala Asp Val225 230 235
240Gln Ile Phe Gly Ser Phe Lys Thr Gly Leu Tyr Leu Pro Thr Ser Asp
245 250 255Ile Asp Leu Val Val Phe Gly Lys Trp Glu Asn Leu Pro Leu
Trp Thr 260 265 270Leu Glu Glu Ala Leu Arg Lys His Lys Val Ala Asp
Glu Asp Ser Val 275 280 285Lys Val Leu Asp Lys Ala Thr Val Pro Ile
Ile Lys Leu Thr Asp Ser 290 295 300Phe Thr Glu Val Lys Val Asp Ile
Ser Phe Asn Val Gln Asn Gly Val305 310 315 320Arg Ala Ala Asp Leu
Ile Lys Asp Phe Thr Lys Lys Tyr Pro Val Leu 325 330 335Pro Tyr Leu
Val Leu Val Leu Lys Gln Phe Leu Leu Gln Arg Asp Leu 340 345 350Asn
Glu Val Phe Thr Gly Gly Ile Gly Ser Tyr Ser Leu Phe Leu Met 355 360
365Ala Val Ser Phe Leu Gln Leu His Pro Arg Glu Asp Ala Cys Ile Pro
370 375 380Asn Thr Asn Tyr Gly Val Leu Leu Ile Glu Phe Phe Glu Leu
Tyr Gly385 390 395 400Arg His Phe Asn Tyr Leu Lys Thr Gly Ile Arg
Ile Lys Asp Gly Gly 405 410 415Ser Tyr Val Ala Lys Asp Glu Val Gln
Lys Asn Met Leu Asp Gly Tyr 420 425 430Arg Pro Ser Met Leu Tyr Ile
Glu Asp Pro Leu Gln Pro Gly Asn Asp 435 440 445Val Gly Arg Ser Ser
Tyr Gly Ala Met Gln Val Lys Gln Ala Phe Asp 450 455 460Tyr Ala Tyr
Val Val Leu Ser His Ala Val Ser Pro Ile Ala Lys Tyr465 470 475
480Tyr Pro Asn Asn Glu Thr Glu Ser Ile Leu Gly Arg Ile Ile Arg Val
485 490 495Thr Asp Glu Val Ala Thr Tyr Arg Asp Trp Ile Ser Lys Gln
Trp Gly 500 505 510Leu Lys Asn Arg Pro Glu Pro Ser Cys Asn Gly Asn
Gly Val Thr Leu 515 520 525Ile Val Asp Thr Gln Gln Leu Asp Lys Cys
Asn Asn Asn Leu Ser Glu 530 535 540Glu Asn Glu Ala Leu Gly Lys Cys
Arg Ser Lys Thr Ser Glu Ser Leu545 550 555 560Ser Lys His Ser Ser
Asn Ser Ser Ser Gly Pro Val Ser Ser Ser Ser 565 570 575Ala Thr Gln
Ser Ser Ser Ser Asp Val Asp Ser Asp Ala Thr Pro Cys 580 585 590Lys
Thr Pro Lys Gln Leu Leu Cys Arg Pro Ser Thr Gly Asn Arg Val 595 600
605Gly Ser Gln Asp Val Ser Leu Glu Ser Ser Gln Ala Val Gly Lys Met
610 615 620Gln Ser Thr Gln Thr Thr Asn Thr Ser Asn Ser Thr Asn Lys
Ser Gln625 630 635 640His Gly Ser Ala Arg Leu Phe Arg Ser Ser Ser
Lys Gly Phe Gln Gly 645 650 655Thr Thr Gln Thr Ser His Gly Ser Leu
Met Thr Asn Lys Gln His Gln 660 665 670Gly Lys Ser Asn Asn Gln Tyr
Tyr His Gly Lys Lys Arg Lys His Lys 675 680 685Arg Asp Ala Pro Leu
Ser Asp Leu Cys Arg 690 6952698PRTHomo sapiens 2Met Arg Pro Arg Pro
Arg Ser Ala Pro Gly Lys Pro Arg Arg Arg Ser1 5 10 15Arg Ala Arg Leu
Arg Ser Ser Arg Thr Pro Ser Gly Gly Ala Ser Gly 20 25 30Gly Gly Gly
Ser Ser Ser Ser Ser Ser Thr Ala Thr Gly Gly Ser Gly 35 40 45Ser Ser
Thr Gly Ser Pro Gly Gly Ala Ala Ser Ala Pro Ala Pro Ala 50 55 60Pro
Ala Gly Met Tyr Arg Ser Gly Glu Arg Leu Leu Gly Ser His Ala65 70 75
80Leu Pro Ala Glu Gln Arg Asp Phe Leu Pro Leu Glu Thr Thr Asn Asn
85 90 95Asn Asn Asn His His Gln Pro Gly Ala Trp Ala Arg Arg Ala Gly
Ser 100 105 110Ser Ala Ser Ser Pro Pro Ser Ala Ser Ser Ser Pro His
Pro Ser Ala 115 120 125Ala Val Pro Ala Ala Asp Pro Ala Asp Ser Ala
Ser Gly Ser Ser Asn 130 135 140Lys Arg Lys Arg Asp Asn Lys Ala Ser
Thr Tyr Gly Leu Asn Tyr Ser145 150 155 160Leu Leu Gln Pro Ser Gly
Gly Arg Ala Ala Gly Gly Gly Arg Ala Asp 165 170 175Gly Gly Gly Val
Val Tyr Ser Gly Thr Pro Trp Lys Arg Arg Asn Tyr 180 185 190Asn Gln
Gly Val Val Gly Leu His Glu Glu Ile Ser Asp Phe Tyr Glu 195 200
205Tyr Met Ser Pro Arg Pro Glu Glu Glu Lys Met Arg Met Glu Val Val
210 215 220Asn Arg Ile Glu Ser Val Ile Lys Glu Leu Trp Pro Ser Ala
Asp Val225 230 235 240Gln Ile Phe Gly Ser Phe Lys Thr Gly Leu Tyr
Leu Pro Thr Ser Asp 245 250 255Ile Asp Leu Val Val Phe Gly Lys Trp
Glu Asn Leu Pro Leu Trp Thr 260 265 270Leu Glu Glu Ala Leu Arg Lys
His Lys Val Ala Asp Glu Asp Ser Val 275 280 285Lys Val Leu Asp Lys
Ala Thr Val Pro Ile Ile Lys Leu Thr Asp Ser 290 295 300Phe Thr Glu
Val Lys Val Asp Ile Ser Phe Asn Val Gln Asn Gly Val305 310 315
320Arg Ala Ala Asp Leu Ile Lys Asp Phe Thr Lys Lys Tyr Pro Val Leu
325 330 335Pro Tyr Leu Val Leu Val Leu Lys Gln Phe Leu Leu Gln Arg
Asp Leu 340 345 350Asn Glu Val Phe Thr Gly Gly Ile Gly Ser Tyr Ser
Leu Phe Leu Met 355 360 365Ala Val Ser Phe Leu Gln Leu His Pro Arg
Glu Asp Ala Cys Ile Pro 370 375 380Asn Thr Asn Tyr Gly Val Leu Leu
Ile Glu Phe Phe Glu Leu Tyr Gly385 390 395 400Arg His Phe Asn Tyr
Leu Lys Thr Gly Ile Arg Ile Lys Asp Gly Gly 405 410 415Ser Tyr Val
Ala Lys Asp Glu Val Gln Lys Asn Met Leu Asp Gly Tyr 420 425 430Arg
Pro Ser Met Leu Tyr Ile Glu Asp Pro Leu Gln Pro Gly Asn Asp 435 440
445Val Gly Arg Ser Ser Tyr Gly Ala Met Gln Val Lys Gln Ala Phe Asp
450 455 460Tyr Ala Tyr Val Val Leu Ser His Ala Val Ser Pro Ile Ala
Lys Tyr465 470 475 480Tyr Pro Asn Asn Glu Thr Glu Ser Ile Leu Gly
Arg Ile Ile Arg Val 485 490 495Thr Asp Glu Val Ala Thr Tyr Arg Asp
Trp Ile Ser Lys Gln Trp Gly 500 505 510Leu Lys Asn Arg Pro Glu Pro
Ser Cys Asn Gly Asn Gly Val Thr Leu 515 520 525Ile Val Asp Thr Gln
Gln Leu Asp Lys Cys Asn Asn Asn Leu Ser Glu 530 535 540Glu Asn Glu
Ala Leu Gly Lys Cys Arg Ser Lys Thr Ser Glu Ser Leu545 550 555
560Ser Lys His Ser Ser Asn Ser Ser Ser Gly Pro Val Ser Ser Ser Ser
565 570 575Ala Thr Gln Ser Ser Ser Ser Asp Val Asp Ser Asp Ala Thr
Pro Cys 580 585 590Lys Thr Pro Lys Gln Leu Leu Cys Arg Pro Ser Thr
Gly Asn Arg Val 595 600 605Gly Ser Gln Asp Val Ser Leu Glu Ser Ser
Gln Ala Val Gly Lys Met 610 615 620Gln Ser Thr Gln Thr Thr Asn Thr
Ser Asn Ser Thr Asn Lys Ser Gln625 630 635 640His Gly Ser Ala Arg
Leu Phe Arg Ser Ser Ser Lys Gly Phe Gln Gly 645 650 655Thr Thr Gln
Thr Ser His Gly Ser Leu Met Thr Asn Lys Gln His Gln 660 665 670Gly
Lys Ser Asn Asn Gln Tyr Tyr His Gly Lys Lys Arg Lys His Lys 675 680
685Arg Asp Ala Pro Leu Ser Asp Leu Cys Arg 690 6953792PRTHomo
sapiens 3Met Asp Pro Arg Val Ala Trp Ile Gln Pro Glu Gln Lys Gly
Pro Ala1 5 10 15Asn Ala Leu Trp Met Gln Ile Trp Glu Thr Ser Gln Gly
Val Gly Arg 20 25 30Gly Gly Ser Gly Phe Ala Ser Tyr Phe Cys Leu Asn
Ser Pro Ala Leu 35 40 45Asp Thr Ala Ala Ala Ala Gly Ala Ala Gly Arg
Gly Ser Gly Gly Leu 50 55 60Gly Pro Ala Leu Pro Ala Ala Ser Pro Pro
Pro Pro Gly Pro Thr Ala65 70 75 80Pro Ala Ala Leu Pro Pro Ala Leu
Leu Thr Ala Leu Gly Pro Ala Ala 85 90 95Glu Gly Ala Arg Arg Leu His
Lys Ser Pro Ser Leu Ser Ser Ser Ser 100 105 110Ser Ser Ser Ser Ser
Asn Ala Glu Ser Gly Thr Glu Ser Pro Gly Cys 115 120 125Ser Ser Ser
Ser Ser Ser Ser Ala Ser Leu Gly Arg Pro Gly Gly Gly 130 135 140Arg
Gly Gly Ala Phe Phe Asn Phe Ala Asp Gly Ala Pro Ser Ala Pro145 150
155 160Gly Thr Ala Asn Gly His Pro Gly Pro Arg Gly Pro Ala Pro Ala
Gly 165 170 175Ser Pro Ser Gln His Gln Phe His Pro Gly Arg Arg Lys
Arg Glu Asn 180 185 190Lys Ala Ser Thr Tyr Gly Leu Asn Tyr Leu Leu
Ser Gly Ser Arg Ala 195 200 205Ala Ala Leu Ser Gly Gly Gly Gly Pro
Gly Ala Gln Ala Pro Arg Pro 210 215 220Gly Thr Pro Trp Lys Ser Arg
Ala Tyr Ser Pro Gly Ile Gln Gly Leu225 230 235 240His Glu Glu Ile
Ile Asp Phe Tyr Asn Phe Met Ser Pro Cys Pro Glu 245 250 255Glu Ala
Ala Met Arg Arg Glu Val Val Lys Arg Ile Glu Thr Val Val 260 265
270Lys Asp Leu Trp Pro Thr Ala Asp Val Gln Ile Phe Gly Ser Phe Ser
275 280 285Thr Gly Leu Tyr Leu Pro Thr Ser Asp Ile Asp Leu Val Val
Phe Gly 290 295 300Lys Trp Glu Arg Pro Pro Leu Gln Leu Leu Glu Gln
Ala Leu Arg Lys305 310 315 320His Asn Val Ala Glu Pro Cys Ser Ile
Lys Val Leu Asp Lys Ala Thr 325 330 335Val Pro Ile Ile Lys Leu Thr
Asp Gln Glu Thr Glu Val Lys Val Asp 340 345 350Ile Ser Phe Asn Met
Glu Thr Gly Val Arg Ala Ala Glu Phe Ile Lys 355 360 365Asn Tyr Met
Lys Lys Tyr Ser Leu Leu Pro Tyr Leu Ile Leu Val Leu 370 375 380Lys
Gln Phe Leu Leu Gln Arg Asp Leu Asn Glu Val Phe Thr Gly Gly385 390
395 400Ile Ser Ser Tyr Ser Leu Ile Leu Met Ala Ile Ser Phe Leu Gln
Leu 405 410 415His Pro Arg Ile Asp Ala Arg Arg Ala Asp Glu Asn Leu
Gly Met Leu 420 425 430Leu Val Glu Phe Phe Glu Leu Tyr Gly Arg Asn
Phe Asn Tyr Leu Lys 435 440 445Thr Gly Ile Arg Ile Lys Glu Gly Gly
Ala Tyr Ile Ala Lys Glu Glu 450 455 460Ile Met Lys Ala Met Thr Ser
Gly Tyr Arg Pro Ser Met Leu Cys Ile465 470 475 480Glu Asp Pro Leu
Leu Pro Gly Asn Asp Val Gly Arg Ser Ser Tyr Gly 485 490 495Ala Met
Gln Val Lys Gln Val Phe Asp Tyr Ala Tyr Ile Val Leu Ser 500 505
510His Ala Val Ser Pro Leu Ala Arg Ser Tyr Pro Asn Arg Asp Ala Glu
515 520 525Ser Thr Leu Gly Arg Ile Ile Lys Val Thr Gln Glu Val Ile
Asp Tyr 530 535 540Arg Arg Trp Ile Lys Glu Lys Trp Gly Ser Lys Ala
His Pro Ser Pro545 550 555 560Gly Met Asp Ser Arg Ile Lys Ile Lys
Glu Arg Ile Ala Thr Cys Asn 565 570 575Gly Glu Gln Thr Gln Asn Arg
Glu Pro Glu Ser Pro Tyr Gly Gln Arg 580 585 590Leu Thr Leu Ser Leu
Ser Ser Pro Gln Leu Leu Ser Ser Gly Ser Ser 595 600 605Ala Ser Ser
Val Ser Ser Leu Ser Gly Ser Asp Val Asp Ser Asp Thr 610 615 620Pro
Pro Cys Thr Thr Pro Ser Val Tyr Gln Phe Ser Leu Gln Ala Pro625 630
635 640Ala Pro Leu Met Ala Gly Leu Pro Thr Ala Leu Pro Met Pro Ser
Gly 645 650 655Lys Pro Gln Pro Thr Thr Ser Arg Thr Leu Ile Met Thr
Thr Asn Asn 660 665 670Gln Thr Arg Phe Thr Ile Pro Pro Pro Thr Leu
Gly Val Ala Pro Val 675 680 685Pro Cys Arg Gln Ala Gly Val Glu Gly
Thr Ala Ser Leu Lys Ala Val 690 695 700His His Met Ser Ser Pro Ala
Ile Pro Ser Ala Ser Pro Asn Pro Leu705 710 715 720Ser Ser Pro His
Leu Tyr His Lys Gln His Asn Gly Met Lys Leu Ser 725 730 735Met Lys
Gly Ser His Gly His Thr Gln Gly Gly Gly Tyr Ser Ser Val 740 745
750Gly Ser Gly Gly Val Arg Pro Pro Val Gly Asn Arg Gly His His Gln
755 760 765Tyr Asn Arg Thr Gly Trp Arg Arg Lys Lys His Thr His Thr
Arg Asp 770 775 780Ser Leu Pro Val Ser Leu Ser Arg785
79048114DNAHomo sapiens 4acaacgcgct ccctgcgggg cgggcggcaa
cctccatgcg gcctcgtcca cgctcagcac 60cggggaagcc gaggcggaga agccgcgcgc
gcctcagaag ctcccggacg cccagcggcg 120gcgcgagcgg cggcggcggc
agcagcagca gcagcagcac ggccaccggc gggagcggca 180gcagcaccgg
cagccccggc ggcgcggcct cggccccggc cccggccccg gccggcatgt
240atcgctccgg ggagcgcctg ctgggcagcc acgcgctgcc cgcggagcag
cgggacttcc 300tgcccctaga gacgaccaac aacaacaaca accaccacca
gcccggggcc tgggcccgcc 360gggcgggctc ctcggcgtcc tcgcctccct
cggcgtcctc gtccccgcac ccttcggccg 420ccgtccccgc cgccgatcca
gccgattcgg cctcgggcag cagcaacaag aggaagcgcg 480acaacaaggc
cagcacgtat ggactcaact acagcctgct gcagcccagc ggagggcggg
540ccgcgggggg cggccgagca gacggcggcg gggtcgtgta cagcgggacc
ccgtggaaac 600ggaggaacta caaccaggga gtcgtgggtc tgcatgaaga
aatcagtgat ttttatgaat 660acatgtctcc aagacctgag gaggagaaga
tgcggatgga ggtggtgaac aggatcgaga 720gtgtaattaa ggagctctgg
cccagcgctg acgtccagat atttggaagt tttaaaactg 780gactttattt
acctactagt gacatcgacc tagtggtgtt tgggaagtgg gagaacctac
840ccctctggac tctggaagaa gctcttcgga aacacaaagt cgcagatgag
gattcggtga 900aagttttaga caaagcaact gtacctatta ttaaattaac
agattctttt actgaagtga 960aagttgatat cagctttaat gtacagaatg
gcgtgagagc agctgacctc atcaaagatt 1020ttaccaagaa atatcctgta
ttgccatact tggttttagt attgaaacaa ttcctattgc 1080agagggacct
taatgaagta tttacaggtg gaattggttc ttatagtctc tttttaatgg
1140cagtcagttt ccttcagtta catcccaggg aagatgcttg catccccaat
acaaactatg 1200gtgttctctt aatagaattt tttgaattat atggacgaca
cttcaattat ttaaagactg 1260gcatccggat aaaggatggt ggttcatatg
tggccaaaga tgaagtacag aaaaatatgc 1320tagatggcta caggccatca
atgctttata tcgaagatcc tttacaacca ggtaacgatg 1380ttggaaggag
ttcatatggg gccatgcaag tgaagcaggc ctttgattat gcctacgttg
1440ttttgagtca tgctgtatca ccaatagcaa agtactatcc caacaatgaa
acagaaagca 1500tactaggtag aataattaga gtaacagatg aagttgccac
atatagagat tggatatcaa 1560agcagtgggg cttgaagaat agacctgagc
cttcatgcaa tggaaatggt gttaccttga 1620tagtagatac tcagcagtta
gataaatgta ataataatct atctgaagaa aatgaagccc 1680ttggaaaatg
tagaagtaaa acctcggaat
ctcttagtaa acactcttca aactcttcat 1740caggtccagt gtcgtcctct
tctgccacac agtccagctc tagtgatgta gattccgatg 1800caacaccatg
caaaaccccg aaacagctgc tttgccgtcc gtccactggg aaccgagtag
1860ggtcgcaaga tgtatccttg gagtcctctc aggcagttgg gaaaatgcaa
agcacccaaa 1920ccactaacac atccaacagc accaacaaat ctcagcatgg
atcagcaagg ctctttcgtt 1980cttccagcaa aggcttccaa ggtacaactc
aaacaagcca tggttccttg atgacaaaca 2040aacaacatca aggcaaatcc
aataatcagt attaccatgg caaaaagagg aaacacaaga 2100gggacgcgcc
cctctcagac ctctgtagat agtcagcgct gcgcggtgga ctgtcttctc
2160tgtgcaatga tctcatgctc aggacagttg cgcagggact cctgggagat
attcaggagc 2220ctcacactgt tcagacgttg acttagcaac tgcgtttttt
cccagctcgc cacagaatgg 2280atcatgaaga ctgacaactg caaaaaaaac
aaaacaaaac aaaaaaaaaa gcaagcaaaa 2340aagagggaaa aaaaaggctg
cttatttgat aagtcatatg ctacaacagg gtcattttaa 2400gatttaaagc
ttgaatgtaa aataaatata tttctcattg gctttatgca gagttatagg
2460gaatagtatt cagtgttggt agggtgatag aaacaaaaaa cagtatcaga
ggatgaggtg 2520gggaaggaaa acaaaggtat ctgataggaa gtccagattc
caaaggggaa agtgatctgt 2580gcatgttttt tttttaaata tttttgcata
tatttaccat tttattgtgt gtatatatag 2640aagaccatat aggagattga
tatttgtaat agtggatttg ttaataatac tttttacata 2700acattactgt
ttaaattgta aacagatttt ttctcaggat tagtttgaaa aataatctaa
2760attgtcatct taacatccat atatagggaa gtgattagtt ctattactca
atttgttttt 2820ctcagcattg aaatgactta atagaaccct tgtgtcctgc
tgcaaaaatt tttcctctct 2880aaagaaaagg tttatggtgg caaatgatgt
ttattttatt ttgtaaaaaa aaaaaaatgt 2940actatgtact tttgtgtaaa
cactgaaaaa tctctggtca tctccgagaa ttaacttgca 3000actgttttct
atagtgctgt cgtcttgggc aatgggcaat tacatgactt tgtgtttgct
3060tcctttgcag tctttttttt ttccccccat ttcttcctaa taggaaaaaa
aaaaaaaaaa 3120aggtcaccca tgtctggtct cattcctgtt gcagtgaaac
ttcgagttcc acagactttg 3180catgctggct tctctaaccc tgtgtgctgc
gtgtgcctgt ttctcatctc ttattctttt 3240taaaattcat gcttaactac
tgtgggagaa taactgtaaa cagctttaat taaatcatac 3300ttataaaaaa
ctattttctt atattccact ctatgctttt ggtattgttg atctttacaa
3360attaaatggt ctttgataat ggatctattt tgtattgcct tattaagacc
aaatacttct 3420tgtcatccca ttctttatcc tcttctttca tggaattgtt
atcgttaatt aaaacttttt 3480taaacattgg cttgtttcaa tcatactgta
aattttggtt gtagtcagct ttgagtgcaa 3540tgagatgtat aattctgtta
tcattacctg ttgagtttga aactcagttg ggaatattta 3600atataataga
atgtaagtga catttctgaa aatgctttct ttcagggtga aagctcttat
3660gtttagcatc aatgtgtatg gctctgttaa atgcagccat ttctgagacg
agattctttt 3720atatatatat acatataaag tactattggc ttttaggagt
ttcttttata tacatttatg 3780aaatactgaa gaccaatcag accattaatg
gacacttagt gtaacttttt ataaagaaaa 3840taatgctaaa gtaagaccaa
aactgatgtc atcactgaaa ttaacaattt tcaatatgtt 3900catattttaa
ttcacaatgg aaaaatgtgt tccaaaactg gaaactcata gtactcgtgt
3960aaactgtgga agatttcaaa tgtgatgtta ttttgacaat gttttaaatt
ttagagtcac 4020attttattct gatcagaatt tttattgaga tgttgagctt
ttgtttttga aactagtttg 4080tcataacatt gtgcataatc acagtattta
ttttctagga caattgtgaa tgtgtagact 4140tatgtttact gctaagggaa
caattattta taaaataata ttaaatccag tattagctgc 4200ctatttcaga
cacttaatac ttgcagagat ctatgttaca tttaccacac tgaagttttt
4260tttgttgttt tttgtttgtt tttaaagaat caccctcatt gttgaaagta
aatgtactct 4320tagggtgcga atattagtgt tccaataagc atgtgattat
attaaggtgg tggtagcggg 4380aagataattc tgattccatt gggaatctta
ggttttcgta aatttattgg gaaaatagtt 4440tttcctgtac tgctgaagtt
tctttttggt aaacagtatc tttctaaaag aaaaaagcat 4500gaaggagaaa
ttgaggtgtg tatacatttc ctcaaatgac cagcattgta ttcgtgaata
4560ctgtgtatct tgcagtgaac agtgtggaag ctgttcattt ttcaatctga
agtaaaatac 4620tttcaagaac ttttagtttg cctgctcatt tgttttatac
atttcatcta tttgactcct 4680atcttatttc ttttttgagt tttaatactt
cctatatttt gtgaatatat cagaaatgtg 4740tcatttatat attagagtcc
attcatatcc atgaatcata accttccttt gctaatactt 4800gttgaatggg
attttacaaa ttctccctca ctctggtgac atttctcagg cagtcatgta
4860tgtgtacctg gccattagaa atattaatat ttaaagactg ttttttagag
gagctgatgg 4920gttggtgagg tgtcagcaca aaatcttact ggttatgttt
tgatgataaa agtatatcca 4980ttttttccct ccagctttaa ggtgactgtg
aaggtgcctg gttttgaatg tctttgtttg 5040gtttggagat gtcgcactca
gttttcaaat ctagcttgga tctgtaggac ctatgttttt 5100tacaagtaat
tgccctccag tcttcaacag ttgattctgt tttattttta tcctgttttg
5160agtgtacttt acctttactt gcattttgag cctcattaat atttaggtta
tttgatttgg 5220ctccagatat tcctagatct gcacagggca aaacatgggc
tatagggtga gcatttttaa 5280ttgtcttttt ctgctggaac cttatatctc
tccatgtgtt ttctgctcct tccctccccc 5340atgaaatggt aagtgtgact
tgtgtttgcc tgaacctgtg gactagtgtt tggggtttct 5400ggaaacacta
gagggtcaga aaagagtaat gaccaccgtg acgtgcagga ttctcttgct
5460gtgacatgtt cattgcaaag ccctctccag tgactaggag gtgtagttat
taaggttgat 5520ctgttagaaa tcaccattat taggtattag tggtagatgt
tgctgatact tttattggtc 5580atgactacat ctcagtttta ctttaatatt
gatctatagt ttgatcagtt ccttgaattc 5640taatatgttg atttctcagt
gtttctgtca ctaaccaaga atgtttctag gcagttggtt 5700gcttcacagt
caaaactaaa tggtaaacta tcaaaaatac attcccaatt ttgctgtgat
5760aaatattgaa atgttaaaat taatgaacag aagaatttat tcttacccat
ctattcttgt 5820tctcctagtt cattaaactt tcagttattg gaaaggcaca
ttctcaaagt attttatgag 5880caaaatattc tataaatgcg tctaacaaac
ctaattgaat ataaaagtta tatttagtag 5940ttactgttga tagtaatttt
catcagggtc atagttcatc tagtaaaata tttagagaat 6000gatgttaaca
ttccagcatt aaagtgggaa caaagattta tatatgaaat tccttaaaag
6060agttcatctt gccttggttt ctgaccctca agactctagc tacctgccat
cttgtcaaaa 6120catttgtggg tagaataagt gttaaagatc aaattttaat
atgcttctcg atatttaaca 6180tagctaagaa gccagatttt actgtagaag
ttatttacat gatttgaaaa cttgacctaa 6240ctggaagcct ttttctcagt
catcttgttc taagccatct tgacttcaca cccttagcga 6300cttttctttt
ttttttggtc aaagataatg agctaaatat atatagacgt tgaatgttga
6360caaaattatt aaccagaaaa attgcttata aaggctgctg atctatttga
tacctagaat 6420taaatatttg aggacagttt ttagttaata aactgctaat
gtttatttta ctgtctctca 6480ggtttttggt ttttttaaaa aaaatgtgtt
tggcctttac attttctact taagtgtgta 6540ctttattgag tttaaccttg
tctgtagcct agtagcctga aagaaaagga gacagaacca 6600gagagatgga
tgtagtgcat tccctttggt tattacacat ttgtggtagc tcctggattt
6660actgagagat attttagcta tgtcaataag aacagctaat gatgtggaaa
tcaggtgttc 6720tcttgtgtat ttcagtgaac atttttatta gtagttgcat
atcatctcta gttccacatt 6780ttaacttaac gtctttgtgg cttcaccact
gagctacctt tcactacacc agcttctgtg 6840tggcctggta acatggaagg
tctctcctaa ggacagtctg gacgtatttt gggggaatgt 6900tatttatctt
aaagatgcct agaaacaaaa cgcatatagt accagtgaga aactatgaag
6960taaacaagtt gctcaggccg ggcatggtgg ctcacgcctg taatcccagc
actttgggag 7020gccgaagcgg gaggatggct tgaggctggg agtttgagac
cttcatctct taaaaaaaca 7080aacaaaaacc tgaatggtga ggtgtggtgg
aattgggtag gggagggaaa ggaggacttg 7140gaaaagcatt ctccaaagcc
agcaacttgg tgaagttcag tacttgcctc ttagaggtta 7200ggccatgcct
ttcaaagaga gtgaaatgat gggttatcag ccacattctt ggagttaata
7260tttttcttca tctttcagtt tgggttctgt gctattcata gttcttccct
aagaccattt 7320cattattacc ttttatattt agttgcaatt tattataata
tgttgttttg tccctgaact 7380taatctccta attttaagat cctctctgat
ttttgcatat tgaaacttac agaagtcact 7440ttaaaaaagt cttttgaaag
tcctacaatc ctaaaataaa tcacaagctt gtttgttaga 7500cgtgtcaaga
gtctccagtc tttactacta aaaagcagca ctgccttaac acacattgtt
7560atgggtgaaa agtgagggac gaccagtgta gtttctggat ataaagtgtg
aaggactgtt 7620gagttaaaca tttttagtgg aatatacata gataacgtgt
atttagaaac tttggtgaag 7680ccagtatttg tttttagtaa cctttttatg
tatttccttc tttgattagc attgtcttca 7740gtgttaagaa atgtggactc
ctgtgaggtg ctggaggttt gaatcatctt gaaaactttc 7800caatcttgtc
tagttaccac tgcagagaca ctaaggaatt taccagaaaa agatatttga
7860tacaagtgat ttaagaaatc tcaacatttc ctgaggccgt atcactgggc
aaccagtgat 7920gaaaactatg aatgaattgc acacctggaa gattttttaa
gctaatgaca gtttcttcaa 7980agatgtcaat tatttgcctt ggaaatttta
taaattgcat ttctatgcac atcggcctct 8040agtgcttacc actcggttta
ttattcataa tctgcaattc aataaaggct ttgtgttttc 8100atttatcttc aaaa
811457973DNAHomo sapiens 5acaacgcgct ccctgcgggg cgggcggcaa
cctccatgcg gcctcgtcca cgctcagcac 60cggggaagcc gaggcggaga agccgcgcgc
gcctcagaag ctcccggacg cccagcggcg 120gcgcgagcgg cggcggcggc
agcagcagca gcagcagcac ggccaccggc gggagcggca 180gcagcaccgg
cagccccggc ggcgcggcct cggccccggc cccggccccg gccggcatgt
240atcgctccgg ggagcgcctg ctgggcagcc acgcgctgcc cgcggagcag
cgggacttcc 300tgcccctaga gacgaccaac aacaacaaca accaccacca
gcccggggcc tgggcccgcc 360gggcgggctc ctcggcgtcc tcgcctccct
cggcgtcctc gtccccgcac ccttcggccg 420ccgtccccgc cgccgatcca
gccgattcgg cctcgggcag cagcaacaag aggaagcgcg 480acaacaaggc
cagcacgtat ggactcaact acagcctgct gcagcccagc ggagggcggg
540ccgcgggggg cggccgagca gacggcggcg gggtcgtgta cagcgggacc
ccgtggaaac 600ggaggaacta caaccaggga gtcgtgggtc tgcatgaaga
aatcagtgat ttttatgaat 660acatgtctcc aagacctgag gaggagaaga
tgcggatgga ggtggtgaac aggatcgaga 720gtgtaattaa ggagctctgg
cccagcgctg acgtccagat atttggaagt tttaaaactg 780gactttattt
acctactagt gacatcgacc tagtggtgtt tgggaagtgg gagaacctac
840ccctctggac tctggaagaa gctcttcgga aacacaaagt cgcagatgag
gattcggtga 900aagttttaga caaagcaact gtacctatta ttaaattaac
agattctttt actgaagtga 960aagttgatat cagctttaat gtacagaatg
gcgtgagagc agctgacctc atcaaagatt 1020ttaccaagaa atatcctgta
ttgccatact tggttttagt attgaaacaa ttcctattgc 1080agagggacct
taatgaagta tttacaggtg gaattggttc ttatagtctc tttttaatgg
1140cagtcagttt ccttcagtta catcccaggg aagatgcttg catccccaat
acaaactatg 1200gtgttctctt aatagaattt tttgaattat atggacgaca
cttcaattat ttaaagactg 1260gcatccggat aaaggatggt ggttcatatg
tggccaaaga tgaagtacag aaaaatatgc 1320tagatggcta caggccatca
atgctttata tcgaagatcc tttacaacca ggtaacgatg 1380ttggaaggag
ttcatatggg gccatgcaag tgaagcaggc ctttgattat gcctacgttg
1440ttttgagtca tgctgtatca ccaatagcaa agtactatcc caacaatgaa
acagaaagca 1500tactaggtag aataattaga gtaacagatg aagttgccac
atatagagat tggatatcaa 1560agcagtgggg cttgaagaat agacctgagc
cttcatgcaa tggtccagtg tcgtcctctt 1620ctgccacaca gtccagctct
agtgatgtag attccgatgc aacaccatgc aaaaccccga 1680aacagctgct
ttgccgtccg tccactggga accgagtagg gtcgcaagat gtatccttgg
1740agtcctctca ggcagttggg aaaatgcaaa gcacccaaac cactaacaca
tccaacagca 1800ccaacaaatc tcagcatgga tcagcaaggc tctttcgttc
ttccagcaaa ggcttccaag 1860gtacaactca aacaagccat ggttccttga
tgacaaacaa acaacatcaa ggcaaatcca 1920ataatcagta ttaccatggc
aaaaagagga aacacaagag ggacgcgccc ctctcagacc 1980tctgtagata
gtcagcgctg cgcggtggac tgtcttctct gtgcaatgat ctcatgctca
2040ggacagttgc gcagggactc ctgggagata ttcaggagcc tcacactgtt
cagacgttga 2100cttagcaact gcgttttttc ccagctcgcc acagaatgga
tcatgaagac tgacaactgc 2160aaaaaaaaca aaacaaaaca aaaaaaaaag
caagcaaaaa agagggaaaa aaaaggctgc 2220ttatttgata agtcatatgc
tacaacaggg tcattttaag atttaaagct tgaatgtaaa 2280ataaatatat
ttctcattgg ctttatgcag agttataggg aatagtattc agtgttggta
2340gggtgataga aacaaaaaac agtatcagag gatgaggtgg ggaaggaaaa
caaaggtatc 2400tgataggaag tccagattcc aaaggggaaa gtgatctgtg
catgtttttt ttttaaatat 2460ttttgcatat atttaccatt ttattgtgtg
tatatataga agaccatata ggagattgat 2520atttgtaata gtggatttgt
taataatact ttttacataa cattactgtt taaattgtaa 2580acagattttt
tctcaggatt agtttgaaaa ataatctaaa ttgtcatctt aacatccata
2640tatagggaag tgattagttc tattactcaa tttgtttttc tcagcattga
aatgacttaa 2700tagaaccctt gtgtcctgct gcaaaaattt ttcctctcta
aagaaaaggt ttatggtggc 2760aaatgatgtt tattttattt tgtaaaaaaa
aaaaaatgta ctatgtactt ttgtgtaaac 2820actgaaaaat ctctggtcat
ctccgagaat taacttgcaa ctgttttcta tagtgctgtc 2880gtcttgggca
atgggcaatt acatgacttt gtgtttgctt cctttgcagt cttttttttt
2940tccccccatt tcttcctaat aggaaaaaaa aaaaaaaaaa ggtcacccat
gtctggtctc 3000attcctgttg cagtgaaact tcgagttcca cagactttgc
atgctggctt ctctaaccct 3060gtgtgctgcg tgtgcctgtt tctcatctct
tattcttttt aaaattcatg cttaactact 3120gtgggagaat aactgtaaac
agctttaatt aaatcatact tataaaaaac tattttctta 3180tattccactc
tatgcttttg gtattgttga tctttacaaa ttaaatggtc tttgataatg
3240gatctatttt gtattgcctt attaagacca aatacttctt gtcatcccat
tctttatcct 3300cttctttcat ggaattgtta tcgttaatta aaactttttt
aaacattggc ttgtttcaat 3360catactgtaa attttggttg tagtcagctt
tgagtgcaat gagatgtata attctgttat 3420cattacctgt tgagtttgaa
actcagttgg gaatatttaa tataatagaa tgtaagtgac 3480atttctgaaa
atgctttctt tcagggtgaa agctcttatg tttagcatca atgtgtatgg
3540ctctgttaaa tgcagccatt tctgagacga gattctttta tatatatata
catataaagt 3600actattggct tttaggagtt tcttttatat acatttatga
aatactgaag accaatcaga 3660ccattaatgg acacttagtg taacttttta
taaagaaaat aatgctaaag taagaccaaa 3720actgatgtca tcactgaaat
taacaatttt caatatgttc atattttaat tcacaatgga 3780aaaatgtgtt
ccaaaactgg aaactcatag tactcgtgta aactgtggaa gatttcaaat
3840gtgatgttat tttgacaatg ttttaaattt tagagtcaca ttttattctg
atcagaattt 3900ttattgagat gttgagcttt tgtttttgaa actagtttgt
cataacattg tgcataatca 3960cagtatttat tttctaggac aattgtgaat
gtgtagactt atgtttactg ctaagggaac 4020aattatttat aaaataatat
taaatccagt attagctgcc tatttcagac acttaatact 4080tgcagagatc
tatgttacat ttaccacact gaagtttttt ttgttgtttt ttgtttgttt
4140ttaaagaatc accctcattg ttgaaagtaa atgtactctt agggtgcgaa
tattagtgtt 4200ccaataagca tgtgattata ttaaggtggt ggtagcggga
agataattct gattccattg 4260ggaatcttag gttttcgtaa atttattggg
aaaatagttt ttcctgtact gctgaagttt 4320ctttttggta aacagtatct
ttctaaaaga aaaaagcatg aaggagaaat tgaggtgtgt 4380atacatttcc
tcaaatgacc agcattgtat tcgtgaatac tgtgtatctt gcagtgaaca
4440gtgtggaagc tgttcatttt tcaatctgaa gtaaaatact ttcaagaact
tttagtttgc 4500ctgctcattt gttttataca tttcatctat ttgactccta
tcttatttct tttttgagtt 4560ttaatacttc ctatattttg tgaatatatc
agaaatgtgt catttatata ttagagtcca 4620ttcatatcca tgaatcataa
ccttcctttg ctaatacttg ttgaatggga ttttacaaat 4680tctccctcac
tctggtgaca tttctcaggc agtcatgtat gtgtacctgg ccattagaaa
4740tattaatatt taaagactgt tttttagagg agctgatggg ttggtgaggt
gtcagcacaa 4800aatcttactg gttatgtttt gatgataaaa gtatatccat
tttttccctc cagctttaag 4860gtgactgtga aggtgcctgg ttttgaatgt
ctttgtttgg tttggagatg tcgcactcag 4920ttttcaaatc tagcttggat
ctgtaggacc tatgtttttt acaagtaatt gccctccagt 4980cttcaacagt
tgattctgtt ttatttttat cctgttttga gtgtacttta cctttacttg
5040cattttgagc ctcattaata tttaggttat ttgatttggc tccagatatt
cctagatctg 5100cacagggcaa aacatgggct atagggtgag catttttaat
tgtctttttc tgctggaacc 5160ttatatctct ccatgtgttt tctgctcctt
ccctccccca tgaaatggta agtgtgactt 5220gtgtttgcct gaacctgtgg
actagtgttt ggggtttctg gaaacactag agggtcagaa 5280aagagtaatg
accaccgtga cgtgcaggat tctcttgctg tgacatgttc attgcaaagc
5340cctctccagt gactaggagg tgtagttatt aaggttgatc tgttagaaat
caccattatt 5400aggtattagt ggtagatgtt gctgatactt ttattggtca
tgactacatc tcagttttac 5460tttaatattg atctatagtt tgatcagttc
cttgaattct aatatgttga tttctcagtg 5520tttctgtcac taaccaagaa
tgtttctagg cagttggttg cttcacagtc aaaactaaat 5580ggtaaactat
caaaaataca ttcccaattt tgctgtgata aatattgaaa tgttaaaatt
5640aatgaacaga agaatttatt cttacccatc tattcttgtt ctcctagttc
attaaacttt 5700cagttattgg aaaggcacat tctcaaagta ttttatgagc
aaaatattct ataaatgcgt 5760ctaacaaacc taattgaata taaaagttat
atttagtagt tactgttgat agtaattttc 5820atcagggtca tagttcatct
agtaaaatat ttagagaatg atgttaacat tccagcatta 5880aagtgggaac
aaagatttat atatgaaatt ccttaaaaga gttcatcttg ccttggtttc
5940tgaccctcaa gactctagct acctgccatc ttgtcaaaac atttgtgggt
agaataagtg 6000ttaaagatca aattttaata tgcttctcga tatttaacat
agctaagaag ccagatttta 6060ctgtagaagt tatttacatg atttgaaaac
ttgacctaac tggaagcctt tttctcagtc 6120atcttgttct aagccatctt
gacttcacac ccttagcgac ttttcttttt tttttggtca 6180aagataatga
gctaaatata tatagacgtt gaatgttgac aaaattatta accagaaaaa
6240ttgcttataa aggctgctga tctatttgat acctagaatt aaatatttga
ggacagtttt 6300tagttaataa actgctaatg tttattttac tgtctctcag
gtttttggtt tttttaaaaa 6360aaatgtgttt ggcctttaca ttttctactt
aagtgtgtac tttattgagt ttaaccttgt 6420ctgtagccta gtagcctgaa
agaaaaggag acagaaccag agagatggat gtagtgcatt 6480ccctttggtt
attacacatt tgtggtagct cctggattta ctgagagata ttttagctat
6540gtcaataaga acagctaatg atgtggaaat caggtgttct cttgtgtatt
tcagtgaaca 6600tttttattag tagttgcata tcatctctag ttccacattt
taacttaacg tctttgtggc 6660ttcaccactg agctaccttt cactacacca
gcttctgtgt ggcctggtaa catggaaggt 6720ctctcctaag gacagtctgg
acgtattttg ggggaatgtt atttatctta aagatgccta 6780gaaacaaaac
gcatatagta ccagtgagaa actatgaagt aaacaagttg ctcaggccgg
6840gcatggtggc tcacgcctgt aatcccagca ctttgggagg ccgaagcggg
aggatggctt 6900gaggctggga gtttgagacc ttcatctctt aaaaaaacaa
acaaaaacct gaatggtgag 6960gtgtggtgga attgggtagg ggagggaaag
gaggacttgg aaaagcattc tccaaagcca 7020gcaacttggt gaagttcagt
acttgcctct tagaggttag gccatgcctt tcaaagagag 7080tgaaatgatg
ggttatcagc cacattcttg gagttaatat ttttcttcat ctttcagttt
7140gggttctgtg ctattcatag ttcttcccta agaccatttc attattacct
tttatattta 7200gttgcaattt attataatat gttgttttgt ccctgaactt
aatctcctaa ttttaagatc 7260ctctctgatt tttgcatatt gaaacttaca
gaagtcactt taaaaaagtc ttttgaaagt 7320cctacaatcc taaaataaat
cacaagcttg tttgttagac gtgtcaagag tctccagtct 7380ttactactaa
aaagcagcac tgccttaaca cacattgtta tgggtgaaaa gtgagggacg
7440accagtgtag tttctggata taaagtgtga aggactgttg agttaaacat
ttttagtgga 7500atatacatag ataacgtgta tttagaaact ttggtgaagc
cagtatttgt ttttagtaac 7560ctttttatgt atttccttct ttgattagca
ttgtcttcag tgttaagaaa tgtggactcc 7620tgtgaggtgc tggaggtttg
aatcatcttg aaaactttcc aatcttgtct agttaccact 7680gcagagacac
taaggaattt accagaaaaa gatatttgat acaagtgatt taagaaatct
7740caacatttcc tgaggccgta tcactgggca accagtgatg aaaactatga
atgaattgca 7800cacctggaag attttttaag ctaatgacag tttcttcaaa
gatgtcaatt atttgccttg 7860gaaattttat aaattgcatt tctatgcaca
tcggcctcta gtgcttacca ctcggtttat 7920tattcataat ctgcaattca
ataaaggctt tgtgttttca tttatcttca aaa 797364511DNAHomo sapiens
6gggcgcgcgg gccccgcggg ggcggcgcgt ggatggatcc gcgcgtggcc tggatccagc
60ccgagcagaa ggggccggcc aatgccctgt ggatgcagat ctgggagacc tcgcagggcg
120tgggccgcgg cggctcgggc ttcgcgtcct atttctgcct caactcgccg
gcgctggaca 180cggcggccgc ggcgggggcg gccgggcggg gcagtggcgg
cctgggcccc gcgctgcccg 240ccgcgtcgcc cccgccgccc ggccccaccg
cgcccgccgc gctgcccccc gcgctgctga 300cggcgctggg gcccgcggcc
gagggcgcgc ggcgcttgca caagtcgccg tcgctgtcgt 360cctcgtcgtc
gtcctcctcg tccaacgcgg agtcgggcac cgagagcccc ggctgctcgt
420cgtcgtcctc cagcagcgcc tcgctgggcc ggccgggcgg cggccgcggc
ggcgccttct 480tcaacttcgc cgacggcgcg cccagcgccc ctggcacagc
caacgggcac cccgggccgc 540gcggccccgc gcccgccggc tccccgtcgc
agcaccagtt ccacccgggt
cgccggaaac 600gcgagaacaa ggccagcacc tacggcctca actacctgct
gtccggcagc cgcgcggccg 660ctctcagcgg agggggcggc cccggggccc
aggcgccgcg gcccggcacc ccgtggaaga 720gccgcgcgta cagcccgggc
atccagggac tacatgagga aataattgac ttttataact 780tcatgtcccc
ttgtcctgaa gaagcagcta tgagaagaga ggtggtgaaa cggatcgaaa
840ctgtggtgaa agacctttgg ccgacggctg atgtacagat atttggcagc
tttagtacag 900gtctttatct tccaactagc gacatagacc tggtggtctt
cgggaaatgg gagcgtcctc 960ctttacagct gctggagcaa gccctgcgga
agcacaacgt ggctgagccg tgttccatca 1020aagtccttga caaggctacg
gtaccaataa taaagctcac agatcaggag actgaagtga 1080aagttgacat
cagctttaac atggagacgg gcgtccgggc agcggagttc atcaagaatt
1140acatgaagaa atattcattg ctgccttact tgattttagt attgaaacag
ttccttctgc 1200agagggacct gaatgaagtt tttacaggtg gaattagctc
atacagccta attttaatgg 1260ccattagctt tctacagttg catccaagaa
ttgatgcccg gagagctgat gaaaaccttg 1320gaatgcttct tgtagaattt
tttgaactct atgggagaaa ttttaattac ttgaaaaccg 1380gtattagaat
caaagaagga ggtgcctata tcgccaaaga ggagatcatg aaagccatga
1440ccagcgggta cagaccgtcg atgctgtgca ttgaggaccc cctgctgcca
gggaatgacg 1500ttggccggag ctcctatggc gccatgcagg tgaagcaggt
cttcgattat gcctacatag 1560tgctcagcca tgctgtgtca ccgctggcca
ggtcctatcc aaacagagac gccgaaagta 1620ctttaggaag aatcatcaaa
gtaactcagg aggtgattga ctaccggagg tggatcaaag 1680agaagtgggg
cagcaaagcc cacccgtcgc caggcatgga cagcaggatc aagatcaaag
1740agcgaatagc cacatgcaat ggggagcaga cgcagaaccg agagcccgag
tctccctatg 1800gccagcgctt gactttgtcg ctgtccagcc cccagctcct
gtcttcaggc tcctcggcct 1860cttctgtgtc ttcactttct gggagtgacg
ttgattcaga cacaccgccc tgcacaacgc 1920ccagtgttta ccagttcagt
ctgcaagcgc cagctcctct catggccggc ttacccaccg 1980ccttgccaat
gcccagtggc aaacctcagc ccaccacttc cagaacactg atcatgacaa
2040ccaacaatca gaccaggttt actatacctc caccgaccct aggggttgct
cctgttcctt 2100gcagacaagc tggtgtagaa ggaactgcgt ctttgaaagc
cgtccaccac atgtcttccc 2160cggccattcc ctcagcgtcc cccaacccgc
tctcgagccc tcatctgtat cataagcagc 2220acaacggcat gaaactgtcc
atgaagggct ctcacggcca cacccaaggc ggcggctaca 2280gctctgtggg
tagcggaggt gtgcggcccc ctgtgggcaa caggggacac caccagtata
2340accgcaccgg ctggaggagg aaaaaacaca cacacacacg ggacagtctg
cccgtgagcc 2400tcagcagata atggctcctg gctgcgtcag cctcccccac
ccctctgcag actgccccgc 2460ggcctcggcc accggcaggg gaaccgagac
cagcaccccg cacgtcagcc gggctcgcgg 2520cacgcccgcc gctgatcact
ctgcatgttt cttcgtgtgg tggtcgcgtc catcttcaag 2580aacagctcgt
tgtgctcatc tgtgaagcct tattaaacgt ggacgttgtt ttctgccttc
2640ccaggattct tccttcagtg ctgaggcagg tcgggctcag gaactgcagg
gacgtgaaca 2700tgcgcttgcg gtttgaggta gccgtgtctg ttccttcgcg
gtttgctatt ttcatttcct 2760gttcgtcaaa gcagcagagg agatcaaacc
ccgttcgtgt gtctttcctc cacggataag 2820cttgggaggt cattgtttta
ctgccctcac attttgtttg aaatttcaga actgtttttc 2880tatgtaaata
ttgaaaactt atgatttgtg caataactca gatatttttt atttaatttc
2940ctattttcac ataagttata tttaagggag gagggaattt tttttaaaca
agcttaggtc 3000ctttcccgag ctgcattttc taagttgggt catcgtgtcg
gctggttgtc tgacgagcat 3060cgttacaaac accatgatga ggggtttggg
gttttatttt gatgtctttt cttttggtcg 3120gaagtgagtg aaggagccag
gtcgccctga aggttttcca aagggcttgg ctccagagcc 3180acctggcaga
ctgcccgtgg ccctgctgtc gggccccagg ccgttgtcct gctctgacca
3240cagagtttta atgttttggt tttcacttct tttaaactgg acaacaaatc
cagcatttca 3300agtgccagaa gtataacttt ctaaggagag aagggttgtc
acattataaa atctttagga 3360aaatgtgaac tggaaaacgc ttcggtcagt
tttagtgaca tagcctgtga tgatgggtct 3420ggtgactatt attgcggacc
gtggtaccca gttttaggaa tgtggagaaa ggaattctgt 3480tgattccgtt
gaggaatctg tagcgtatgc attcgttctg ttaagagcaa atctaggaga
3540agtgcttcag ctgcccagtg cgccgtgggg agtgttttaa cggatcgtgt
cgcaggagag 3600cacagcccag cgttggggcc gggaccgctg gcgcccgacg
tcggaagcat acaggtatac 3660tatgcaagtg tattctgcca caacaaccac
tgtctttgtt accttttttt gaacaagaat 3720atatccatcc tgcctaaccc
tgagtttttg gagcaccaca gttgtcctgg gagttggttg 3780catcttgtag
gccatctgac ttcctgtttt taaaacgggg gtctggtctt gctaaacact
3840acaggtaggt tggtctttga agtccactag tggagaatgt caagacaaga
tacttattac 3900catgacatct gatgcatgtg cagcagtggg gagttctaga
ttgatctctg aatgtgatcg 3960acgcccagca aggacaagct ttaaaatgtc
tgcggtctgc ccttttgaag caggactggc 4020tcactctgtc attgggagct
gtcagctgcg actgcaggtt ctctaggagg cattccagaa 4080tagagtagca
cactgtgtct gcagttctcg atgaccgaaa gttatcaaaa atatttaaaa
4140tatttaaatt gtgaacctat tgataaagaa tatttataaa aactgatctg
taggcctgta 4200ctaatctcta cgcattagca atattgactg taaacccaca
ttaaggaaac cactacgggt 4260ctggcagtgc gtgtcccgtg gggtgtgcat
tttaaaactc gattcataga cacaggtacc 4320atgttccatt tccgtcatgg
tgaagcaaat gaattggcct ggctaccact gtggtcgcgt 4380gctacaggtt
tgacaaaaag atatcatgtt tcgatttttt tgtgtgtgga caacaatatg
4440gaagctaaaa ttgacatatt tttatgtaaa gtttttctat tctttgattt
ttaataaact 4500ttggaaacca g 45117474PRTHomo sapiens 7Thr Tyr Gly
Leu Asn Tyr Ser Leu Leu Gln Pro Ser Gly Gly Arg Ala1 5 10 15Ala Gly
Gly Gly Arg Ala Asp Gly Gly Gly Val Val Tyr Ser Gly Thr 20 25 30Pro
Trp Lys Arg Arg Asn Tyr Asn Gln Gly Val Val Gly Leu His Glu 35 40
45Glu Ile Ser Asp Phe Tyr Glu Tyr Met Ser Pro Arg Pro Glu Glu Glu
50 55 60Lys Met Arg Met Glu Val Val Asn Arg Ile Glu Ser Val Ile Lys
Glu65 70 75 80Leu Trp Pro Ser Ala Asp Val Gln Ile Phe Gly Ser Phe
Lys Thr Gly 85 90 95Leu Tyr Leu Pro Thr Ser Asp Ile Asp Leu Val Val
Phe Gly Lys Trp 100 105 110Glu Asn Leu Pro Leu Trp Thr Leu Glu Glu
Ala Leu Arg Lys His Lys 115 120 125Val Ala Asp Glu Asp Ser Val Lys
Val Leu Asp Lys Ala Thr Val Pro 130 135 140Ile Ile Lys Leu Thr Asp
Ser Phe Thr Glu Val Lys Val Asp Ile Ser145 150 155 160Phe Asn Val
Gln Asn Gly Val Arg Ala Ala Asp Leu Ile Lys Asp Phe 165 170 175Thr
Lys Lys Tyr Pro Val Leu Pro Tyr Leu Val Leu Val Leu Lys Gln 180 185
190Phe Leu Leu Gln Arg Asp Leu Asn Glu Val Phe Thr Gly Gly Ile Gly
195 200 205Ser Tyr Ser Leu Phe Leu Met Ala Val Ser Phe Leu Gln Leu
His Pro 210 215 220Arg Glu Asp Ala Cys Ile Pro Asn Thr Asn Tyr Gly
Val Leu Leu Ile225 230 235 240Glu Phe Phe Glu Leu Tyr Gly Arg His
Phe Asn Tyr Leu Lys Thr Gly 245 250 255Ile Arg Ile Lys Asp Gly Gly
Ser Tyr Val Ala Lys Asp Glu Val Gln 260 265 270Lys Asn Met Leu Asp
Gly Tyr Arg Pro Ser Met Leu Tyr Ile Glu Asp 275 280 285Pro Leu Gln
Pro Gly Asn Asp Val Gly Arg Ser Ser Tyr Gly Ala Met 290 295 300Gln
Val Lys Gln Ala Phe Asp Tyr Ala Tyr Val Val Leu Ser His Ala305 310
315 320Val Ser Pro Ile Ala Lys Tyr Tyr Pro Asn Asn Glu Thr Glu Ser
Ile 325 330 335Leu Gly Arg Ile Ile Arg Val Thr Asp Glu Val Ala Thr
Tyr Arg Asp 340 345 350Trp Ile Ser Lys Gln Trp Gly Leu Lys Asn Arg
Pro Glu Pro Ser Cys 355 360 365Asn Gly Asn Gly Val Thr Leu Ile Val
Asp Thr Gln Gln Leu Asp Lys 370 375 380Cys Asn Asn Asn Leu Ser Glu
Glu Asn Glu Ala Leu Gly Lys Cys Arg385 390 395 400Ser Lys Thr Ser
Glu Ser Leu Ser Lys His Ser Ser Asn Ser Ser Ser 405 410 415Gly Pro
Val Ser Ser Ser Ser Ala Thr Gln Ser Ser Ser Ser Asp Val 420 425
430Asp Ser Asp Ala Thr Pro Cys Lys Thr Pro Lys Gln Leu Leu Cys Arg
435 440 445Pro Ser Thr Gly Asn Arg Val Gly Ser Gln Asp Val Ser Leu
Glu Ser 450 455 460Ser Gln Ala Val Gly Lys Met Gln Ser Thr465
4708419PRTHomo sapiens 8Leu Leu Gln Pro Ser Gly Gly Arg Ala Ala Gly
Gly Gly Arg Ala Asp1 5 10 15Gly Gly Gly Val Val Tyr Ser Gly Thr Pro
Trp Lys Arg Arg Asn Tyr 20 25 30Asn Gln Gly Val Val Gly Leu His Glu
Glu Ile Ser Asp Phe Tyr Glu 35 40 45Tyr Met Ser Pro Arg Pro Glu Glu
Glu Lys Met Arg Met Glu Val Val 50 55 60Asn Arg Ile Glu Ser Val Ile
Lys Glu Leu Trp Pro Ser Ala Asp Val65 70 75 80Gln Ile Phe Gly Ser
Phe Lys Thr Gly Leu Tyr Leu Pro Thr Ser Asp 85 90 95Ile Asp Leu Val
Val Phe Gly Lys Trp Glu Asn Leu Pro Leu Trp Thr 100 105 110Leu Glu
Glu Ala Leu Arg Lys His Lys Val Ala Asp Glu Asp Ser Val 115 120
125Lys Val Leu Asp Lys Ala Thr Val Pro Ile Ile Lys Leu Thr Asp Ser
130 135 140Phe Thr Glu Val Lys Val Asp Ile Ser Phe Asn Val Gln Asn
Gly Val145 150 155 160Arg Ala Ala Asp Leu Ile Lys Asp Phe Thr Lys
Lys Tyr Pro Val Leu 165 170 175Pro Tyr Leu Val Leu Val Leu Lys Gln
Phe Leu Leu Gln Arg Asp Leu 180 185 190Asn Glu Val Phe Thr Gly Gly
Ile Gly Ser Tyr Ser Leu Phe Leu Met 195 200 205Ala Val Ser Phe Leu
Gln Leu His Pro Arg Glu Asp Ala Cys Ile Pro 210 215 220Asn Thr Asn
Tyr Gly Val Leu Leu Ile Glu Phe Phe Glu Leu Tyr Gly225 230 235
240Arg His Phe Asn Tyr Leu Lys Thr Gly Ile Arg Ile Lys Asp Gly Gly
245 250 255Ser Tyr Val Ala Lys Asp Glu Val Gln Lys Asn Met Leu Asp
Gly Tyr 260 265 270Arg Pro Ser Met Leu Tyr Ile Glu Asp Pro Leu Gln
Pro Gly Asn Asp 275 280 285Val Gly Arg Ser Ser Tyr Gly Ala Met Gln
Val Lys Gln Ala Phe Asp 290 295 300Tyr Ala Tyr Val Val Leu Ser His
Ala Val Ser Pro Ile Ala Lys Tyr305 310 315 320Tyr Pro Asn Asn Glu
Thr Glu Ser Ile Leu Gly Arg Ile Ile Arg Val 325 330 335Thr Asp Glu
Val Ala Thr Tyr Arg Asp Trp Ile Ser Lys Gln Trp Gly 340 345 350Leu
Lys Asn Arg Pro Glu Pro Ser Cys Asn Gly Pro Val Ser Ser Ser 355 360
365Ser Ala Thr Gln Ser Ser Ser Ser Asp Val Asp Ser Asp Ala Thr Pro
370 375 380Cys Lys Thr Pro Lys Gln Leu Leu Cys Arg Pro Ser Thr Gly
Asn Arg385 390 395 400Val Gly Ser Gln Asp Val Ser Leu Glu Ser Ser
Gln Ala Val Gly Lys 405 410 415Met Gln Ser9320PRTHomo sapiens 9Tyr
Ser Pro Gly Ile Gln Gly Leu His Glu Glu Ile Ile Asp Phe Tyr1 5 10
15Asn Phe Met Ser Pro Cys Pro Glu Glu Ala Ala Met Arg Arg Glu Val
20 25 30Val Lys Arg Ile Glu Thr Val Val Lys Asp Leu Trp Pro Thr Ala
Asp 35 40 45Val Gln Ile Phe Gly Ser Phe Ser Thr Gly Leu Tyr Leu Pro
Thr Ser 50 55 60Asp Ile Asp Leu Val Val Phe Gly Lys Trp Glu Arg Pro
Pro Leu Gln65 70 75 80Leu Leu Glu Gln Ala Leu Arg Lys His Asn Val
Ala Glu Pro Cys Ser 85 90 95Ile Lys Val Leu Asp Lys Ala Thr Val Pro
Ile Ile Lys Leu Thr Asp 100 105 110Gln Glu Thr Glu Val Lys Val Asp
Ile Ser Phe Asn Met Glu Thr Gly 115 120 125Val Arg Ala Ala Glu Phe
Ile Lys Asn Tyr Met Lys Lys Tyr Ser Leu 130 135 140Leu Pro Tyr Leu
Ile Leu Val Leu Lys Gln Phe Leu Leu Gln Arg Asp145 150 155 160Leu
Asn Glu Val Phe Thr Gly Gly Ile Ser Ser Tyr Ser Leu Ile Leu 165 170
175Met Ala Ile Ser Phe Leu Gln Leu His Pro Arg Ile Asp Ala Arg Arg
180 185 190Ala Asp Glu Asn Leu Gly Met Leu Leu Val Glu Phe Phe Glu
Leu Tyr 195 200 205Gly Arg Asn Phe Asn Tyr Leu Lys Thr Gly Ile Arg
Ile Lys Glu Gly 210 215 220Gly Ala Tyr Ile Ala Lys Glu Glu Ile Met
Lys Ala Met Thr Ser Gly225 230 235 240Tyr Arg Pro Ser Met Leu Cys
Ile Glu Asp Pro Leu Leu Pro Gly Asn 245 250 255Asp Val Gly Arg Ser
Ser Tyr Gly Ala Met Gln Val Lys Gln Val Phe 260 265 270Asp Tyr Ala
Tyr Ile Val Leu Ser His Ala Val Ser Pro Leu Ala Arg 275 280 285Ser
Tyr Pro Asn Arg Asp Ala Glu Ser Thr Leu Gly Arg Ile Ile Lys 290 295
300Val Thr Gln Glu Val Ile Asp Tyr Arg Arg Trp Ile Lys Glu Lys
Trp305 310 315 3201019RNAartificialHuman PAPD5 target RNA
10caucaaugcu uuauaucga 191119RNAartificialHuman PAPD5 target RNA
11ggacgacacu ucaauuauu 191219RNAartificialHuman PAPD5 RNA target
sequence 12gauaaaggau ggugguuca 191319RNAartificialhuman PAPD5
Target mRNA sequence 13gaauagaccu gagccuuca
191419RNAartificialhuman PAPD7 target mRNA sequence 14ggagugacgu
ugauucaga 191519RNAartificialhuman PAPD7 target mRNA sequence
15cggaguucau caagaauua 191619RNAartificialhuman PAPD7 target RNA
sequence 16cggaguucau caagaauua 191719RNAartificialhuman PAPD7
target mRNA sequence 17gcgaauagcc acaugcaau
191819DNAartificialPrimer 18ctgtgccttg ggtggcttt
191924DNAArtificialprimer 19aaggaaagaa gtcagaaggc aaaa
242025DNAartificialprobe 20ttctttataa gggtcgatgt ccatg 25
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