U.S. patent application number 17/401851 was filed with the patent office on 2022-03-17 for compositions and methods for controlling insect pests.
This patent application is currently assigned to Monsanto Technology LLC. The applicant listed for this patent is Monsanto Technology LLC. Invention is credited to James A. Baum, Brian D. Eads, Jeremy A. Kroemer, Christina Marie Taylor.
Application Number | 20220081695 17/401851 |
Document ID | / |
Family ID | 1000005784716 |
Filed Date | 2022-03-17 |
United States Patent
Application |
20220081695 |
Kind Code |
A1 |
Baum; James A. ; et
al. |
March 17, 2022 |
COMPOSITIONS AND METHODS FOR CONTROLLING INSECT PESTS
Abstract
Disclosed herein are methods of controlling insect pests which
infest crop plants, in particular Spodoptera frugiperda (fall
armyworm), Lygus hesperus (western tarnished plant bug), Euschistus
heros (neotropical brown stink bug), and Plutella xylostella
(diamondback moth), and methods of providing plants resistant to
such pests. Also disclosed are polynucleotides and recombinant DNA
molecules and constructs useful in such methods, insecticidal
compositions such as topical sprays containing insecticidal
double-stranded RNAs, and plants with improved resistance to
infestation by these insects. Further disclosed are methods of
selecting target genes for RNAi-mediated silencing and control of
these insect pests.
Inventors: |
Baum; James A.; (Webster
Groves, MO) ; Eads; Brian D.; (Ballwin, MO) ;
Kroemer; Jeremy A.; (Ballwin, MO) ; Taylor; Christina
Marie; (Chesterfield, MO) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Monsanto Technology LLC |
St. Louis |
MO |
US |
|
|
Assignee: |
Monsanto Technology LLC
St. Louis
MO
|
Family ID: |
1000005784716 |
Appl. No.: |
17/401851 |
Filed: |
August 13, 2021 |
Related U.S. Patent Documents
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
|
|
15300661 |
Sep 29, 2016 |
11091770 |
|
|
PCT/US2015/022985 |
Mar 27, 2015 |
|
|
|
17401851 |
|
|
|
|
61973484 |
Apr 1, 2014 |
|
|
|
Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C12N 15/8218 20130101;
Y02A 40/146 20180101; A01N 57/16 20130101; A01N 63/60 20200101;
C12N 15/8286 20130101; C12N 2310/14 20130101; A01N 63/10 20200101;
C12N 2320/00 20130101 |
International
Class: |
C12N 15/82 20060101
C12N015/82; A01N 63/60 20060101 A01N063/60; A01N 63/10 20060101
A01N063/10; A01N 57/16 20060101 A01N057/16 |
Claims
1. A method for controlling an insect infestation of a plant
comprising contacting with a dsRNA an insect that infests a plant,
wherein said dsRNA comprises at least one segment of 18 or more
contiguous nucleotides with a sequence of about 95% to about 100%
complementarity with a fragment of a target gene of said insect,
and wherein said target gene has a DNA sequence selected from the
group consisting of SEQ ID NOs:1-12 and 43-44.
2. The method of claim 1, wherein said insect is selected from the
group consisting of Spodoptera spp., Lygus spp., Euschistus spp.,
and Plutella spp.
3. The method of claim 1, wherein: (a) said insect is Spodoptera
frugiperdo (fall armyworm) and said target gene comprises a DNA
sequence selected from the group consisting of SEQ ID NOs:1-3; (b)
said insect is Lygus hesperus (western tarnished plant bug) and
said target gene comprises a DNA sequence selected from the group
consisting of SEQ ID NOs:4-7, 43, and 44; (c) said insect is
Euschistus heros (neotropical brown stink bug) and said target gene
comprises a DNA sequence selected from the group consisting of SEQ
ID NOs:8-9; or (d) said insect is Plutella xylostella (diamondback
moth) and said target gene comprises a DNA sequence selected from
the group consisting of SEQ ID NOs:10-12.
4. The method of claim 1, wherein: (a) said insect is Spodoptera
frugiperda (fall armyworm) and said dsRNA comprises a sequence
selected from the group consisting of SEQ ID NOs:17-19; (b) said
insect is Lygus hesperus (western tarnished plant bug) and said
dsRNA comprises a sequence selected from the group consisting of
SEQ ID NOs:14-16, 22, 26, 45, and 46; (c) said insect is Euschistus
heros (neotropical brown stink bug) and said dsRNA comprises a
sequence selected from the group consisting of SEQ ID NOs:23-25; or
(d) said insect is Plutella xylostella (diamondback moth) and said
dsRNA comprises a sequence selected from the group consisting of
SEQ ID NOs:13, 20-21, and 28-29.
5. The method of claim 1, wherein said at least one segment is
multiple segments.
6. The method of claim 1, wherein said dsRNA is (a) blunt-ended, or
(b) has an overhang at at least one terminus.
7. The method of claim 1, wherein said dsRNA is (a) chemically
synthesized, or (b) produced by expression in a microorganism,
expression in a plant cell, or by microbial fermentation.
8. The method of claim 1, wherein said dsRNA is chemically
modified.
9. The method of claim 1, wherein said contacting comprises
application of a composition comprising said dsRNA to a surface of
said insect or to a surface of said plant infested by said
insect.
10. The method of claim 9, wherein said composition comprises a
solid, liquid, powder, suspension, emulsion, spray, encapsulation,
microbeads, carrier particulates, film, matrix, or seed
treatment.
11. The method of claim 1, wherein said contacting comprises
providing said dsRNA in a composition that further comprises one or
more components selected from the group consisting of a carrier
agent, a surfactant, an organosilicone, a polynucleotide herbicidal
molecule, a non-polynucleotide herbicidal molecule, a
non-polynucleotide pesticide, a safener, an insect attractant, and
an insect growth regulator.
12. The method of claim 1, wherein said contacting comprises
providing said dsRNA in a composition that further comprises at
least one pesticidal agent selected from the group consisting of a
patatin, a plant lectin, a phytoecdysteroid, a Bacillus
thuringiensis insecticidal protein, a Xenorhabdus insecticidal
protein, a Photorhabdus insecticidal protein, a Bacillus
laterosporous insecticidal protein, and a Bacillus sphaericus
insecticidal protein.
13. The method of claim 1, wherein said contacting comprises
providing said dsRNA in a composition that is ingested by said
insect.
14. The method of claim 13, wherein said composition that is
ingested further comprises one or more components selected from the
group consisting of a carrier agent, a surfactant, an
organosilicone, a polynucleotide herbicidal molecule, a
non-polynucleotide herbicidal molecule, a non-polynucleotide
pesticide, a safener, an insect attractant, and an insect growth
regulator.
15. The method of claim 13, wherein said composition that is
ingested further comprises at least one pesticidal agent selected
from the group consisting of a patatin, a plant lectin, a
phytoecdysteroid, a Bacillus thuringiensis insecticidal protein, a
Xenorhabdus insecticidal protein, a Photorhabdus insecticidal
protein, a Bacillus laterosporous insecticidal protein, and a
Bacillus sphaericus insecticidal protein.
16. A method of causing mortality or stunting in an insect,
comprising providing in the diet of an insect at least one
recombinant RNA comprising at least one silencing element
essentially identical or essentially complementary to a fragment of
a target gene sequence of said insect, wherein said target gene
sequence is selected from the group consisting of SEQ ID NOs:1-12
and 43-44, and wherein ingestion of said recombinant RNA by said
insect results in mortality or stunting in said insect.
17. The method of claim 16, wherein said recombinant RNA comprises
at least one RNA strand having a sequence of about 95% to about
100% identity or complementarily with a sequence selected from the
group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46.
18. The method of claim 16, wherein: (a) said insect is Spodoptera
frugiperda (fall armyworm) and said target gene comprises a DNA
sequence selected from the group consisting of SEQ ID NOs:1-3; (b)
said insect is Lygus hesperus (western tarnished plant bug) and
said target gene comprises a DNA sequence selected from the group
consisting of SEQ ID NOs:4-7, 43, and 44; (c) said insect is
Euschistus heros (neotropical brown stink bug) and said target gene
comprises a DNA sequence selected from the group consisting of SEQ
ID NOs:8-9; or (d) said insect is Plutella xylostella (diamondback
moth) and said target gene comprises a DNA sequence selected from
the group consisting of SEQ ID NOs:10-12.
19. The method of claim 16, wherein: (a) said insect is Spodoptera
frugiperda (fall armyworm) and said silencing clement comprises a
sequence selected from the group consisting of SEQ ID NOs:17-19;
(b) said insect is Lygus hesperus (western tarnished plant bug) and
said silencing element comprises a sequence selected from the group
consisting of SEQ ID NOs:14-16, 22, 26, 45, and 46; (c) said insect
is Euschistus heros (neotropical brown stink bug) and said
silencing element comprises a sequence selected from the group
consisting of SEQ ID NOs:23-25; or (d) said insect is Plutella
xylostella (diamondback moth) and said silencing element comprises
a sequence selected from the group consisting of SEQ ID NOs:13,
20-21, and 28-29.
20. The method of claim 16, wherein said recombinant RNA is
dsRNA.
21. The method of claim 16, wherein said recombinant RNA is (a)
blunt-ended dsRNA, or (b) dsRNA with an overhang at at least one
terminus.
22. The method of claim 16, wherein said recombinant RNA is
provided in a microbial or plant cell or in a microbial
fermentation product.
23. The method of claim 16, wherein said recombinant RNA is
chemically synthesized.
24. The method of claim 16, wherein said insect is in a larval or
nymph stage.
25. The method of claim 16, wherein said insect is an adult.
26. The method of claim 20, wherein said dsRNA comprises at least
one RNA strand having a sequence of about 95% to about 100%
identity or complementarity with a sequence selected from the group
consisting SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46.
27. An insecticidal composition comprising an insecticidally
effective amount of a recombinant RNA molecule, wherein said
recombinant RNA molecule comprises at least one segment of 18 or
more contiguous nucleotides with a sequence of about 95% to about
100% complementarity with a fragment of a target gene of an insect
that infests a plant, and wherein said target gene has a DNA
sequence selected from the group consisting of SEQ III NOs:1-12 and
43-44.
28. The insecticidal composition of claim 27, wherein said
recombinant RNA molecule comprises at least one RNA strand having a
sequence of about 95% to about 100% identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:13-26, 28-29, 30-42, 45, and 46.
29. The insecticidal composition of claim 27, wherein said
recombinant RNA molecule is a dsRNA comprising an RNA strand having
a sequence selected from the group consisting of SEQ ID NOs:13-26,
28-29, 30-42, 45, and 46.
30. The insecticidal composition of claim 29, wherein said dsRNA is
at least 50 base pairs in length.
31. The insecticidal composition of claim 27, wherein: (a) said
insect is Spodoptera frugiperda (fall armyworm) and said target
gene comprises a DNA sequence selected from the group consisting of
SEQ ID NOs:1-3; (b) said insect is Lygus hesperus (western
tarnished plant bug) and said target gene comprises a DNA sequence
selected from the group consisting of SEQ ID NOs:4-7, 43, and 44;
(c) said insect is Euschistus heros (neotropical brown stink bug)
and said target gene comprises a DNA sequence selected from the
group consisting of SEQ ID NOs:8-9; or (d) said insect is Plutella
xylostella (diamondback moth) and said target gene comprises a DNA
sequence selected from the group consisting of SEQ ID
NOs:10-12.
32. The insecticidal composition of claim 27, wherein: (a) said
insect is Spodoptera frugiperda (fall armyworm) and said
recombinant RNA molecule comprises at least one RNA strand having a
sequence of about 95% to about 100% identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:17-19; (b) said insect is Lygus hesperus (western tarnished
plant bug) and said recombinant RNA molecule comprises at least one
RNA strand having a sequence of about 95% to about 100% identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:14-16, 22, 26, 45, and 46; (c) said insect is
Euschistus heros (neotropical brown stink hug) and said recombinant
RNA molecule comprises at least one RNA strand having a sequence of
about 95% to about 100% identity or complementarity with a sequence
selected from the group consisting of SEQ ID NOs:23-25; or (d) said
insect is Plutella xylostella (diamondback moth) and said
recombinant RNA molecule comprises at least one RNA strand having a
sequence of about 95% to about 100% identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:13, 20-21, and 28-29.
33. The insecticidal composition of claim 27, wherein: (a) said
insect is Spodoptera frugiperda (fall armyworm) and said
recombinant RNA molecule is a dsRNA comprising an RNA strand having
a sequence selected from the group consisting of SEQ ID NOs:17-19;
(b) said insect is Lygus hesperus (western tarnished plant bug) and
recombinant RNA molecule is a dsRNA comprising an RNA strand having
a sequence selected from the group consisting of SEQ ID NOs:14-16,
22, 26, 45, and 46; (c) said insect is Euschistus heros
(neotropical brown stink bug) and recombinant RNA molecule is a
dsRNA comprising an RNA strand having a sequence selected from the
group consisting of SEQ ID NOs:23-25; or (d) said insect is
Plutella xylostella (diamondback moth) and recombinant RNA molecule
is a dsRNA comprising an RNA strand having a sequence selected from
the group consisting of SEQ ID NOs:13, 20-21, and 28-29.
34. The insecticidal composition of claim 27, further comprising
one or more components selected from the group consisting of a
carrier agent, a surfactant, an organosilicone, a polynucleotide
herbicidal molecule, a non-polynucleotide herbicidal molecule, a
non-polynucleotide pesticide, a safener, an insect attractant, and
an insect growth regulator.
35. The insecticidal composition of claim 27, further comprising at
least one pesticidal agent selected from the group consisting of a
patatin, a plant lectin, a phytoecdysteroid, a Bacillus
thuringiensis insecticidal protein, a Xenorhabdus insecticidal
protein, a Photorhabdus insecticidal protein, a Bacillus
laterosporous insecticidal protein, and a Bacillus sphaericus
insecticidal protein.
36. The insecticidal composition of claim 27, wherein said
composition is in a form selected from the group consisting of a
solid, liquid, powder, suspension, emulsion, spray, encapsulation,
microbeads, carrier particulates, film, matrix, soil drench, insect
diet or insect bait, and seed treatment.
37. A plant treated with the insecticidal composition of claim 27,
or seed of said plant, wherein said plant exhibits improved
resistance to said insect.
38. A method of providing a plant having improved resistance to an
insect, comprising expressing in said plant a recombinant DNA
construct comprising DNA encoding RNA that includes at least one
silencing element essentially identical or essentially
complementary to a fragment of a target gene sequence of said
insect, wherein said target gene sequence is selected from the
group consisting of SEQ ID NOs:1-12 and 43-44, and wherein
ingestion of said RNA by said insect results in mortality or
stunting in said insect.
39. The method of claim 38, wherein said silencing element has a
sequence of about 95% to about 100% identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:13-26, 28-29, 30-42, 45, and 46.
40. The method of claim 38, wherein said recombinant DNA construct
further comprises a heterologous promoter operably linked to said
DNA encoding RNA that includes at least one silencing clement,
wherein said heterologous promoter is functional in a plant
cell.
41. The method of claim 38, wherein said expressing is by means of
transgenic expression or transient expression.
42. The method of claim 38, further comprising expression in said
plant of at least one pesticidal agent selected from the group
consisting of a patatin, a plant lectin, a phytoecdysteroid, a
Bacillus thuringiensis insecticidal protein, a Xenorhabdus
insecticidal protein, a Photorhabdus insecticidal protein, a
Bacillus laterosporous insecticidal protein, and a Bacillus
sphaericus insecticidal protein.
43. The plant having improved resistance to an insect, provided by
the method of claim 38.
44. Fruit, seed, or propagatable parts of the plant of claim
43.
45. A recombinant DNA construct comprising a heterologous promoter
operably linked to DNA encoding an RNA transcript comprising a
sequence of about 95% to about 100% identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:13-26, 28-29, 30-42, 45, and 46.
46. The recombinant DNA construct of claim 45, wherein said
heterologous promoter is (a) functional for expression of said RNA
transcript in a bacterium.
47. The recombinant DNA construct of claim 46, wherein said
bacterium is selected from the group consisting of Escherichia
coli, Bacillus species, Pseudomonas species, Xenorhabdus species,
or Photorhabdus species.
48. The recombinant DNA construct of claim 45, wherein said
heterologous promoter is functional in a plant cell.
49. A recombinant vector comprising the recombinant DNA construct
of claim 45.
50. The recombinant vector of claim 49, wherein said recombinant
vector is a recombinant plant virus vector or a recombinant
baculovirus vector.
51. A plant chromosome or plastid comprising the recombinant DNA
construct of claim 45.
52. A transgenic plant cell having in its genome the recombinant
DNA construct of claim 45
53. A transgenic plant comprising the transgenic plant cell of
claim 52.
54. A commodity product produced from the transgenic plant of claim
53.
55. A transgenic progeny seed or propagatable plant part of the
transgenic plant of claim 53.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS AND INCORPORATION OF
SEQUENCE LISTINGS
[0001] This application claims priority to U. S. Provisional Patent
Application No. 61/973,484 filed 1 Apr. 2014, which is incorporated
by reference in its entirety herein. The sequence listing contained
in the file "40-21_70001_0000_US_ST25.txt" (49 kilobytes, created
on 1 Apr. 2014, filed with U.S. Provisional Patent Application No.
61/973,484 on 1 Apr. 2014), and the replacement sequence listing
contained in the file "40-21_70001_0000_US_ST25.txt" (49 kilobytes,
created on 4 Apr. 2014, filed as a replacement sequence listing on
4 Apr. 2014 solely to correct the listing of inventors), are
incorporated by in their entirety herein. The sequence listing
contained in the file "40-21_70001_0000_WO_ST25.txt" (70 kilobytes,
created on 13 Mar. 2015) is filed herewith and is incorporated by
reference in its entirety herein.
FIELD OF THE INVENTION
[0002] Disclosed herein are methods for controlling invertebrate
pest infestations, particularly in plants, and compositions and
polynucleotides useful in such methods. More specifically, this
invention is related to polynucleotides and methods of use thereof
for modifying the expression of genes in an invertebrate pest,
particularly through RNA interference. Pest species of interest
include insects that infest crop plants, e. g., Plutella xylostella
(diamondback moth), Spodoptera frugiperda (fall armyworm), Lygus
hesperus (western tarnished plant bug), and Euschistus heros
(neotropical brown stink bug).
BACKGROUND OF THE INVENTION
[0003] Commercial crops are often the targets of attack by
invertebrate pests such as insects. Compositions for controlling
insect infestations in plants have typically been in the form of
chemical insecticides. However, there are several disadvantages to
using chemical insecticides. For example, chemical insecticides are
generally not selective, and applications of chemical insecticides
intended to control insect pests in crop plants can exert their
effects on non-target insects and other invertebrates as well.
Chemical insecticides often persist in the environment and can be
slow to degrade, thus potentially accumulating in the food chain.
Furthermore the use of persistent chemical insecticides can result
in the development of resistance in the target insect species. Thus
there has been a long felt need for more environmentally friendly
methods for controlling or eradicating insect infestation on or in
plants, i. e., methods which are species-selective, environmentally
inert, non-persistent, and biodegradable, and that fit well into
pest resistance management schemes.
[0004] Insecticidal compositions that include Bacillus
thuringiensis ("Bt") bacteria have been commercially available and
used as environmentally safe and acceptable insecticides for more
than thirty years. The effectiveness of these compositions is due
to insecticidal proteins that are produced exclusively by Bt
bacteria. The insecticidal Bt proteins do not persist in the
environment, are highly selective as to the target species
affected, exert their effects only upon ingestion by a target
insect, and have been shown to be harmless to plants and other
non-targeted organisms, including humans and other vertebrates.
Transgenic plants containing one or more recombinant genes encoding
insecticidal Bt proteins are also available in the art and are
resistant to insect pest infestation. One positive environmental
result of the use of transgenic plants expressing Bt proteins is a
decrease in the amount of chemical insecticides that are applied to
control pest infestation in such transgenic crop fields, resulting
in decreased contamination of soil and waters by non-degraded or
excess chemical insecticides. In addition, there has been a
noticeable increase in the numbers of beneficial insects in fields
in which Bt protein-expressing transgenic crop plants are grown
because of the decrease in the use of non-selective chemical
insecticides.
[0005] RNA interference (RNAi, RNA-mediated gene suppression) is
another approach used for pest control. In invertebrates RNAi-based
gene suppression was first demonstrated in nematodes (Fire et al.,
(1998) Nature, 391:806-811; Timmons & Fire (1998) Nature,
395:854). Subsequently, RNAi-based suppression of invertebrate
genes using recombinant nucleic acid techniques has been reported
in a number of species, including agriculturally or economically
important pests from various insect and nematode taxa. such as:
root-knot nematodes (Meloidogyne spp.), see Huang et al. (2006)
Proc. Natl. Acad. Sci. USA, 103:14302-14306,
doi:10.1073/pnas.0604698103); cotton bollworm (Helicoverpa
armigera), see Mao et al. (2007) Nature Biotechnol., 25:1307-1313,
doi:10.1038/nbt1352; Western corn rootworm (Diabrotica virgifera
LeConte), see Baum et al. (2007) Nature Biotechnol., 25:1322-1326,
doi:10.1038/nbt1359; sugar beet cyst nematode (Heterodera
schachtii), see Sindhu et al. (2008) J. Exp. Botany, 60:315-324,
doi:10.1093/jxb/ern289; mosquito (Aedes aegypti), see Pridgeon et
al. (2008) J. Med. Entomol., 45:414-420, doi:
full/10.1603/0022-2585%282008%2945%5B414%3ATAADRK%5D2.0.00%3B2
fruit flies (Drosophila melanogaster), flour beetles (Triboliutn
castaneum), pea aphids (Acyrthosiphon pisum), and tobacco hornworms
(Manduca sexta), see Whyard et al. (2009) Insect Biochem. Mol.
Biol., 39:824-832, doi:10.1016/j.ibmb.2009.09.00; diamondback moth
(Plutella xylostella), see Gong et al. (2011) Pest Manag. Sci., 67:
514-520, doi:10.1002/ps.2086; green peach aphid (Myzus persicae),
see Pilino et al. (2011) PLoS ONE, 6:e25709,
doi:10.1371/journal.pone.0025709; brown planthopper (Nilaparvata
lugens), see Li et al. (2011) Pest Manag. Sci., 67:852-859,
doi:10.1002/ps.2124; and whitefly (Bemisia tabaci), see Upadhyay et
al. (2011) J. Biosci., 36:153-161,
doi:10.1007/s12038-011-9009-1.
[0006] This invention is related to methods of controlling insect
pests, in particular insects which infest crop plants and have
previously been found to be recalcitrant to RNA-mediated gene
suppression methods, e. g., Plutella xylostella (diamondback moth),
Spodoptera frugiperda (fall armyworm), Lygus hesperus (western
tarnished plant bug), and Euschistus heros (neotropical brown stink
bug). Double-stranded RNA (dsRNA) trigger sequences have been
identified for testing on the recalcitrant insect species Plutella
xylostella (diamondback moth, DBM), Spodoptera frugiperda (fall
armyworm, FAW), Lygus hesperus (western tarnished plant bug, WTPB),
and Euschistus heros (neotropical brown stink bug, NBSB). These
triggers are designed to suppress novel target genes that are
putative orthologues of genes previously demonstrated to be
efficacious targets for RNAi-mediated mortality in Western corn
rootworm (Diabrotica virgifera).
[0007] This invention is further related to polynucleotides and
recombinant DNA molecules and constructs useful in methods of
controlling insect pests. This invention is further related to
insecticidal compositions, as well as to transgenic plants
resistant to infestation by insect pests. This invention is also
related to methods of identifying efficacious double-stranded RNA
triggers for controlling insect pests, and methods for identifying
target genes that are likely to represent essential functions,
making these genes preferred targets for RNAi-mediated silencing
and control of insect pests.
SUMMARY OF THE INVENTION
[0008] This invention is related to control of insect species,
especially those that are economically or agriculturally important
pests. The compositions and methods of this invention include
recombinant polynucleotide molecules, such as recombinant DNA
constructs for making transgenic plants resistant to infestation by
insect species and RNA "triggers" that are useful, e. g., as
topically applied agents for causing RNAi-mediated suppression of a
target gene in a insect species and thus controlling or preventing
infestation by that insect species. Another utility of this
invention is a polynucleotide-containing composition (e. g., a
composition containing a dsRNA trigger for suppressing a target
gene) that is topically applied to an insect species or to a plant,
plant part, or seed to be protected from infestation by an insect
species. This invention is further related to methods for selecting
preferred insect target genes that arc more likely to be effective
targets for RNAi-mediated control of an insect species.
[0009] In one aspect, this invention provides a method for
controlling an insect infestation of a plant including contacting
with a dsRNA an insect that infests a plant, wherein the dsRNA
includes at least one segment of 18 or more contiguous nucleotides
with a sequence of about 95% to about 100% complementarity with a
fragment of a target gene of the insect, and wherein the target
gene has a DNA sequence selected from the group consisting of SEQ
ID NOs:1-12 and 43-44. In embodiments, the dsRNA includes an RNA
strand with a sequence of about 95% to about 100% identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In embodiments, the
dsRNA includes an RNA strand with a sequence selected from the
group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In
embodiments, the dsRNA trigger suppresses a gene in the insect and
stunts or kills the insect.
[0010] In another aspect, this invention provides a method of
causing mortality or stunting in an insect, including providing in
the diet of an insect at least one recombinant RNA including at
least one silencing element essentially identical or essentially
complementary to a fragment of a target gene sequence of the
insect, wherein the target gene sequence is selected from the group
consisting of SEQ ID NOs:1-12 and 43-44, and wherein ingestion of
the recombinant RNA by the insect results in mortality or stunting
in the insect. In embodiments, the silencing element includes an
RNA strand with a sequence of about 95% to about 100% identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In embodiments, the
silencing clement includes an RNA strand with a sequence selected
from the group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45,
and 46.
[0011] In another aspect, this invention provides an insecticidal
composition including an insecticidally effective amount of a
recombinant RNA molecule, wherein the recombinant RNA molecule
includes at least one segment of 18 or more contiguous nucleotides
with a sequence of about 95% to about 100% complementarily with a
fragment of a target gene of an insect that infests a plant, and
wherein the target gene has a DNA sequence selected from the group
consisting of SEQ ID NOs:1-12 and 43-44. In embodiments, the
recombinant RNA molecule is dsRNA. In embodiments, the recombinant
RNA molecule includes at least one segment (e. g., an RNA strand or
segment of an RNA strand) with a sequence of about 95% to about
100% identity or complementarity with a sequence selected from the
group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In
embodiments, the recombinant RNA molecule includes at least one
segment (e. g., an RNA strand or segment of an RNA strand) with a
sequence selected from the group consisting of SEQ ID NOs:13-26,
28-29, 30-42, 45, and 46.
[0012] In another aspect, this invention provides a method of
providing a plant having improved resistance to an insect,
including expressing in the plant a recombinant DNA construct
including DNA encoding at least one silencing element essentially
identical or essentially complementary to a fragment of a target
gene sequence of the insect, wherein the target gene sequence is
selected from the group consisting of SEQ ID NOs:1-12 and 43-44,
and wherein ingestion of the recombinant RNA by the insect results
in mortality or stunting in the insect. In embodiments, the
silencing element is ssRNA. In other embodiments, the silencing
element is dsRNA. In embodiments, the silencing element includes
RNA (e. g., an RNA strand or segment of an RNA strand) with a
sequence of about 95% to about 100% identity or complementarity
with a sequence selected from the group consisting of SEQ Ill
NOs:13-26, 28-29, 30-42, 45, and 46. In embodiments, the silencing
element includes RNA (e. g., an RNA strand or segment of an RNA
strand) with a sequence selected from the group consisting of SEQ
ID NOs:13-26, 28-29, 30-42, 45, and 46.
[0013] In another aspect, this invention provides a recombinant DNA
construct including a heterologous promoter, such as a heterologous
promoter functional in a bacterial cell or in a eukaryotic cell (e.
g., a plant cell or an insect cell), operably linked to DNA
encoding an RNA transcript including a sequence of about 95% to
about 100% identity or complementarity with a sequence selected
from the group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45,
and 46. In embodiments, the RNA transcript is ssRNA. In other
embodiments, the RNA transcript is dsRNA. In embodiments, the
silencing element includes RNA (e. g., an RNA strand or segment of
an RNA strand) with a sequence of about 95% to about 100% identity
or complementarity with a sequence selected from the group
consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In
embodiments, the silencing element includes RNA (e. g., an RNA
strand or segment of an RNA strand) with a sequence selected from
the group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and
46.
[0014] In related aspects, this invention provides man-made
compositions including the polynucleotide or trigger of this
invention, such as dsRNA formulations useful for topical
application to a plant or substance in need of protection from an
insect infestation, recombinant constructs and vectors useful for
making transgenic plant cells and transgenic plants, formulations
and coatings useful for treating plants (including plant seeds or
propagatable parts such as tubers), plant seeds or propagatable
parts such as tubers treated with or containing a polynucleotide of
this invention as well as commodity products and foodstuffs
produced from such plants, seeds, or propagatable parts (especially
commodity products and foodstuffs having a detectable amount of a
polynucleotide of this invention). A further aspect of this
invention are polyclonal or monoclonal antibodies that bind a
peptide or protein encoded by a sequence or a fragment of a
sequence selected from the group consisting of SEQ ID NOs:1-12 and
43-44; another aspect of this invention are polyclonal or
monoclonal antibodies that hind a peptide or protein encoded by a
sequence or a fragment of a sequence selected from the group
consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46 or the
complement thereof. Such antibodies are made by routine methods as
known to one of ordinary skill in the art.
[0015] Other aspects and specific embodiments of this invention are
disclosed in the following detailed description and working
Examples.
BRIEF DESCRIPTION OF THE DRAWINGS
[0016] FIG. 1 depicts the results of the transfection experiments
described in Example 2 for the dsRNA triggers (TOP PANEL) T34640
(SEQ ID NO:17, targetting V-ATPase A subunit), (MIDDLE PANEL)
T34642 (SEQ ID NO:18, targetting COPI coatomer beta subunit), or
(BOTTOM PANEL) T34644 (SEQ ID NO:19, targetting COPI coatomer beta
prime subunit) in Spodoptera frugipertla (fall armyworm, FAW) SF9
cells.
[0017] FIG. 2 depicts the results of the transfection experiments
described in Example 2 for the dsRNA triggers (TOP PANEL) T42017
(SEQ ID NO:21, targetting V-ATPase subunit A), (TOP PANEL) T33310
(SEQ ID NO:29, targetting V-ATPase subunit A), (MIDDLE PANEL)
T32938 (SEQ ID NO:28, targetting COPI coatomer beta subunit), and
(BOTTOM PANEL) T32937 (SEQ ID NO:13, targetting COPI coatomer beta
prime subunit) in Plutella xylostella (diamondback moth, DBM)
cells.
DETAILED DESCRIPTION OF THE INVENTION
[0018] Unless defined otherwise, all technical and scientific terms
used have the same meaning as commonly understood by one of
ordinary skill in the art to which this invention belongs.
Generally, the nomenclature used and the manufacturing or
laboratory procedures described below are well known and commonly
employed in the art. Conventional methods are used for these
procedures, such as those provided in the art and various general
references. Where a term is provided in the singular, the inventors
also contemplate aspects of the invention described by the plural
of that term. Where there are discrepancies in terms and
definitions used in references that are incorporated by reference,
the terms used in this application shall have the definitions
given. Other technical terms used have their ordinary meaning in
the art in which they are used, as exemplified by various
art-specific dictionaries, for example, "The American Heritage.RTM.
Science Dictionary" (Editors of the American Heritage Dictionaries,
2011, Houghton Mifflin Harcourt, Boston and New York), the
"McGraw-Hill Dictionary of Scientific and Technical Terms"
(6.sup.th edition, 2002, McGraw-Hill, New York), or the "Oxford
Dictionary of Biology" (6.sup.th edition, 2008, Oxford University
Press, Oxford and New York). The inventors do not intend to be
limited to a mechanism or mode of action. Reference thereto is
provided for illustrative purposes only.
[0019] Unless otherwise stated, nucleic acid sequences in the text
of this specification are given, when read from left to right, in
the 5' to 3' direction. One of skill in the art would be aware that
a given DNA sequence is understood to define a corresponding RNA
sequence which is identical to the DNA sequence except for
replacement of the thymine (T) nucleotides of the DNA with uracil
(U) nucleotides. Thus, providing a specific DNA sequence is
understood to define the exact RNA equivalent. A given first
polynucleotide sequence, whether DNA or RNA, further defines the
sequence of its exact complement (which can be DNA or RNA), i. e.,
a second polynucleotide that hybridizes perfectly to the first
polynucleotide by forming Watson-Crick base-pairs. By "essentially
identical" or "essentially complementary" to a target gene or a
fragment of a target gene is meant that a polynucleotide strand (or
at least one strand of a double-stranded polynucleotide) is
designed to hybridize (generally under physiological conditions
such as those found in a living plant or animal cell) to a target
gene or to a fragment of a target gene or to the transcript of the
target gene or the fragment of a target gene; one of skill in the
art would understand that such hybridization does not necessarily
require 100% sequence identity or complementarity. A first nucleic
acid sequence is "operably" connected or "linked" with a second
nucleic acid sequence when the first nucleic acid sequence is
placed in a functional relationship with the second nucleic acid
sequence. For example, a promoter sequence is "operably linked" to
DNA if the promoter provides for transcription or expression of the
DNA. Generally, operably linked DNA sequences are contiguous.
[0020] The term "polynucleotide" commonly refers to a DNA or RNA
molecule containing multiple nucleotides and generally refers both
to "oligonucleotides" (a polynucleotide molecule of 18-25
nucleotides in length) and longer polynucleotides of 26 or more
nucleotides. Polynucleotides also include molecules containing
multiple nucleotides including non-canonical nucleotides or
chemically modified nucleotides as commonly practiced in the art;
see, e. g., chemical modifications disclosed in the technical
manual "RNA Interference (RNAi) and DsiRNAs", 2011 (Integrated DNA
Technologies Coralville, Iowa). Generally, polynucleotides or
triggers of this invention, whether DNA or RNA or both, and whether
single- or double-stranded, include at least one segment of 18 or
more contiguous nucleotides (or, in the case of double-stranded
polynucleotides, at least 18 contiguous base-pairs) that are
essentially identical or complementary to a fragment of equivalent
size of the DNA of a target gene or the target gene's RNA
transcript. Throughout this disclosure, "at least 18 contiguous"
means "from about 18 to about 10,000, including every whole number
point in between". Thus, embodiments of this invention include
compositions including oligonucleotides having a length of 18-25
nucleotides (18-mers, 19-mers, 20-mers, 21-mers, 22-mers, 23-mers,
24-mers, or 25-mers), or medium-length polynucleotides having a
length of 26 or more nucleotides (polynucleotides of 26, 27, 28,
29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45,
46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, about
65, about 70, about 75, about 80, about 85, about 90, about 95,
about 100, about 110, about 120, about 130, about 140, about 150,
about 160, about 170, about 180, about 190, about 200, about 210,
about 220, about 230, about 240, about 250, about 260, about 270,
about 280, about 290, or about 300 nucleotides), or long
polynucleotides having a length greater than about 300 nucleotides
(e. g., polynucleotides of between about 300 to about 400
nucleotides, between about 400 to about 500 nucleotides, between
about 500 to about 600 nucleotides, between about 600 to about 700
nucleotides, between about 700 to about 800 nucleotides, between
about 800 to about 900 nucleotides, between about 900 to about 1000
nucleotides, between about 300 to about 500 nucleotides, between
about 300 to about 600 nucleotides, between about 300 to about 700
nucleotides, between about 300 to about 800 nucleotides, between
about 300 to about 900 nucleotides, or about 1000 nucleotides in
length, or even greater than about 1000 nucleotides in length, for
example up to the entire length of a target gene including coding
or non-coding or both coding and non-coding portions of the target
gene). Where a polynucleotide is double-stranded, such as the dsRNA
triggers described in the working Examples, its length can be
similarly described in terms of base pairs. Double-stranded
polynucleotides, such as the dsRNA triggers described in the
working examples, can further be described in terms of one or more
of the single-stranded components.
[0021] The polynucleotides or triggers of this invention are
generally designed to suppress or silence one or more genes
("target genes"). The term "gene" refers to any portion of a
nucleic acid that provides for expression of a transcript or
encodes a transcript. A "gene" can include, but is not limited to,
a promoter region, 5' untranslated regions, transcript encoding
regions that can include intronic regions, 3' untranslated regions,
or combinations of these regions. In embodiments, the target genes
can include coding or non-coding sequence or both. In other
embodiments, the target gene has a sequence identical to or
complementary to a messenger RNA, e. g., in embodiments the target
gene is a cDNA.
Controlling Insect Infestations of a Plant by Contacting with a
dsRNA
[0022] A first aspect of this invention provides a method for
controlling an insect infestation of a plant including contacting
with a double-stranded RNA (dsRNA) an insect that infests a plant,
wherein the dsRNA includes at least one segment of 18 or more
contiguous nucleotides with a sequence of about 95% to about 100%
(e. g., about 95%, about 96%, about 97%, about 98%, about 99%, or
about 100%) complementarity with a fragment of a target gene of the
insect, and wherein the target gene has a DNA sequence selected
from the group consisting of SEQ ID NOs:1-12 and 43-44. In this
context "controlling" includes inducement of a physiological or
behavioural change in an insect (adult or larvae or nymphs) such
as, but not limited to, growth stunting, increased mortality,
decrease in reproductive capacity, decrease in or cessation of
feeding behavior or movement, or decrease in or cessation of
metamorphosis stage development. "Double-stranded" refers to the
base-pairing that occurs between sufficiently complementary,
anti-parallel nucleic acid strands to form a double-stranded
nucleic acid structure, generally under physiologically relevant
conditions.
[0023] In various embodiments, the insect is selected from the
group consisting of Spodoptera spp., Lygus spp., Euschistus spp.,
and Plutella spp. Insects of particular interest include Spodoptera
frugiperda (fall armyworm), Lygus hesperus (western tarnished plant
bug), Euschistus hews (neotropical brown stink bug), and Plutella
xylostella (diamondback moth).
[0024] Various embodiments of the method include those wherein the
insect is Spodoptera frugiperda (fall armyworm) and the target gene
includes a DNA sequence selected from the group consisting of SEQ
ID NOs:1-3; wherein the insect is Lygus hesperus (western tarnished
plant bug) and the target gene includes a DNA sequence selected
from the group consisting of SEQ ID NOs:4-7, 43, and 44; wherein
the insect is Euschistus heros (neotropical brown stink bug) and
the target gene includes a DNA sequence selected from the group
consisting of SEQ ID NOs:8-9; and wherein the insect is Plutella
xylostella (diamondback moth) and the target gene includes a DNA
sequence selected from the group consisting of SEQ ID NOs:10-12.
Other embodiments of the method include those wherein the insect is
Spodoptera frugiperda (fall armyworm) and the dsRNA includes a
sequence selected from the group consisting of SEQ ID NOs:17-19;
wherein the insect is Lygus hesperus (western tarnished plant bug)
and the dsRNA includes a sequence selected from the group
consisting of SEQ ID NOs:14-16, 22, 26, 45, and 46; wherein the
insect is Euschistus heros (neotropical brown stink bug) and the
dsRNA includes a sequence selected from the group consisting of SEQ
ID NOs:23-25; and wherein the insect is Plutella xylostella
(diamondback moth) and the dsRNA includes a sequence selected from
the group consisting of SEQ ID NOs:13, 20-21, and 28-29. Other
embodiments include those where the dsRNA has a sequence modified
as described in Example 5 to eliminate matches to non-target
organisms, such as the modified sequences (SEQ ID NOs:30-42)
disclosed in Table 6.
[0025] The plant can be any plant that is subject to infestation by
an insect that can be controlled by the polynucleotides disclosed
herein. Plants of particular interest include commercially
important plants, including row crop plants, vegetables, and
fruits, and other plants of agricultural or decorative use.
Examples of suitable plants are provided under the heading
"Plants".
[0026] In embodiments of the method, the dsRNA includes multiple
segments each of 18 or more contiguous nucleotides with a sequence
of about 95% to about 100% (e. g., about 95%, about 96%, about 97%,
about 98%, about 99%, or about 100%) complementarity with a
fragment of a target gene of the insect. For example, the dsRNA can
include segments corresponding to different regions of the target
gene, or can include multiple copies of a segment. In other
embodiments of the method, the dsRNA includes multiple segments,
each of 18 or more contiguous nucleotides with a sequence of about
95% to about 100% (e. g., about 95%, about 96%, about 97%, about
98%, about 99%, or about 100%) complementarity with a fragment of a
different target gene; in this way multiple target genes, or
multiple insect species, can be suppressed.
[0027] In embodiments of the method, the dsRNA is blunt-ended. In
other embodiments, the dsRNA has an overhang at one or both ends
(termini); the overhang can be a single nucleotide or 2, 3, 4, 5,
6, or more nucleotides, and can be located on the 5' end or on the
3' end of a strand. The dsRNA can be chemically synthesized, or can
be produced by expression in a microorganism, by expression in a
plant cell, or by microbial fermentation. The dsRNA can be
chemically modified, e. g., to improve stability or efficacy.
[0028] In some embodiments of the method, the contacting includes
application of a composition including the dsRNA to a surface of
the insect or to a surface of the plant infested by the insect. The
composition can include or be in the form of a solid, liquid,
powder, suspension, emulsion, spray, encapsulation, microbeads,
carrier particulates, film, matrix, or seed treatment. In
embodiments, the composition can be applied to a seed, e. g., by
soaking the seed in a liquid composition including the dsRNA,
wherein the seed imbibes or takes up the dsRNA into the seed
interior or seed endosperm in an effective amount to provide
improved resistance to the insect pest by the seed or a plant or
seedling grown from the seed. In embodiments, the contacting
includes providing the dsRNA in a composition that further includes
one or more components selected from the group consisting of a
carrier agent, a surfactant, an organosilicone, a polynucleotide
herbicidal molecule, a non-polynucleotide herbicidal molecule, a
non-polynucleotide pesticide, a safener, an insect attractant, and
an insect growth regulator. In embodiments, the contacting includes
providing the dsRNA in a composition that further includes at least
one pesticidal agent selected from the group consisting of a
patatin, a plant lectin, a phytoecdysteroid, a Bacillus
thuringiensis insecticidal protein, a Xenorhabdus insecticidal
protein, a Photorhabdus insecticidal protein, a Bacillus
laterosporous insecticidal protein, and a Bacillus sphaericus
insecticidal protein.
[0029] In some embodiments of the method, the contacting includes
providing the dsRNA in a composition that is ingested by the
insect, such as in a liquid, emulsion, or powder applied to a plant
on which the insect feeds, or in the form of bait. Such
compositions can further includes one or more components selected
from the group consisting of a carrier agent, a surfactant, an
organosilicone, a polynucleotide herbicidal molecule, a
non-polynucleotide herbicidal molecule, a non-polynucleotide
pesticide, a safener, an insect attractant, and an insect growth
regulator. Such compositions can further include at least one
pesticidal agent selected from the group consisting of a patatin, a
plant lectin, a phytoecdysteroid, a Bacillus thuringiensis
insecticidal protein, a Xenorhabdus insecticidal protein, a
Photorhabdus insecticidal protein, a Bacillus laterosporous
insecticidal protein, and a Bacillus sphaericus insecticidal
protein. In embodiments, the combination of the dsRNA and the
pesticidal agent provides a level of insect control that is
synergistic, i. e., greater than the sum of the effects of the
dsRNA and the pesticidal agent components if tested separately.
Methods of Causing Mortality or Stunting in an Insect
[0030] Another aspect of this invention provides a method of
causing mortality or stunting in an insect, including providing in
the diet of an insect at least one recombinant RNA including at
least one silencing element essentially identical or essentially
complementary to a fragment of a target gene sequence of the
insect, wherein the target gene sequence is selected from the group
consisting of SEQ ID NOs:1-12 and 43-44, and wherein ingestion of
the recombinant RNA by the insect results in mortality or stunting
in the insect. The method is applicable to insects at various life
stages. In embodiments, the method causes mortality or stunting in
an insect larva or nymph. In other embodiments, the method causes
mortality in adult insects.
[0031] In embodiments of the method the recombinant RNA includes at
least one RNA strand having a sequence of about 95% to about 100%
(e. g., about 95%, about 96%, about 97%, about 98%, about 99%, or
about 100%) identity or complementarity with a sequence selected
from the group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45,
and 46. Embodiments of the method include those wherein the insect
is Spodoptera frugiperda (fall armyworm) and the target gene
includes a DNA sequence selected from the group consisting of SEQ
ID NOs:1-3; wherein the insect is Lygus hesperus (western tarnished
plant bug) and the target gene includes a DNA sequence selected
from the group consisting of SEQ ID NOs:4-7, 43, and 44; wherein
the insect is Euschistus heros (neotropical brown stink bug) and
the target gene includes a DNA sequence selected from the group
consisting of SEQ ID NOs:8-9; and wherein the insect is Plutella
xylostella (diamondback moth) and the target gene includes a DNA
sequence selected from the group consisting of SEQ ID NOs:10-12.
Other embodiments of the method include those wherein the insect is
Spodoptera frugiperda (fall armyworm) and the silencing element
includes a sequence selected from the group consisting of SEQ ID
NOs:17-19; wherein the insect is Lygus hesperus (western tarnished
plant bug) and the silencing element includes a sequence selected
from the group consisting of SEQ ID NOs:14-16, 22, 26, 45, and 46;
wherein the insect is Euschistus heros (neotropical brown stink
bug) and the silencing element includes a sequence selected from
the group consisting of SEQ ID NOs:23-25; and wherein the insect is
Plutella xylostella (diamondback moth) and the silencing element
includes a sequence selected from the group consisting of SEQ ID
NOs:13, 20-21, and 28-29. Other embodiments include those where the
recombinant RNA has a sequence modified as described in Example 5
to eliminate matches to non-target organisms, such as the modified
sequences (SEQ ID NOs:30-42) disclosed in Table 6.
[0032] In embodiments of the method, the recombinant RNA is dsRNA.
In these embodiments, the dsRNA can be blunt-ended dsRNA, or can be
dsRNA with an overhang at one or both ends (termini); the overhang
can be a single nucleotide or 2, 3, 4, 5, 6, or more nucleotides,
and can be located on the 5' end or on the 3' end of a strand. The
dsRNA can be chemically synthesized, or can be produced by
expression in a microorganism, by expression in a plant cell, or by
microbial fermentation. The dsRNA can be chemically modified, e.
g., to improve stability or efficacy. In embodiments of the method
where the recombinant RNA is dsRNA, the dsRNA includes at least one
RNA strand having a sequence of about 95% to about 100% identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46.
[0033] In some embodiments of the method, the recombinant RNA is
provided in the insect's diet in the form of an ingestible
composition, such as in a liquid, emulsion, or powder applied to a
plant on which the insect feeds, or in the form of bait. Such
ingestible compositions can further includes one or more components
selected from the group consisting of a carrier agent, a
surfactant, an organosilicone, a polynucleotide herbicidal
molecule, a non-polynucleotide herbicidal molecule, a
non-polynucleotide pesticide, a safener, an insect attractant, and
an insect growth regulator. Such ingestible compositions can
further include at least one pesticidal agent selected from the
group consisting of a patatin, a plant lectin, a phytoecdysteroid,
a Bacillus thuringiensis insecticidal protein, a Xenorhabdus
insecticidal protein, a Photothabdus insecticidal protein, a
Bacillus laterosporous insecticidal protein, and a Bacillus
sphaericus insecticidal protein. In embodiments, the combination of
the recombinant RNA and the pesticidal agent provides a level of
insect stunting or mortality that is synergistic, i. e., greater
than the sum of the effects of the recombinant RNA and the
pesticidal agent components if tested separately.
Insecticidal Compositions
[0034] Another aspect of the invention provides an insecticidal
composition including an insecticidally effective amount of a
recombinant RNA molecule, wherein the recombinant RNA molecule
includes at least one segment of 18 or more contiguous nucleotides
with a sequence of about 95% to about 100% (e. g., about 95%, about
96%, about 97%, about 98%, about 99%, or about 100%)
complementarity with a fragment of a target gene of an insect that
infests a plant, and wherein the target gene has a DNA sequence
selected from the group consisting of SEQ ID NOs:1-12 and 43-44. By
"insecticidally effective" is meant effective in inducing a
physiological or behavioural change in an insect (adult or larvae
or nymphs) that infests a plant such as, but not limited to, growth
stunting, increased mortality, decrease in reproductive capacity or
decreased fecundity, decrease in or cessation of feeding behavior
or movement, or decrease in or cessation of metamorphosis stage
development; in embodiments, application of an insecticidally
effective amount of the recombinant RNA molecule to a plant
improves the plant's resistance to infestation by the insect.
[0035] In embodiments of the insecticidal composition, the
recombinant RNA molecule includes at least one RNA strand having a
sequence of about 95% to about 100% (e. g., about 95%, about 96%,
about 97%, about 98%, about 99%, or about 100%) identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In specific
embodiments, the recombinant RNA molecule is a dsRNA including an
RNA strand having a sequence selected from the group consisting of
SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In embodiments, the
recombinant RNA molecule is a dsRNA of at least 50 base pairs in
length. In embodiments of the method, the recombinant RNA molecule
is dsRNA. In embodiments, the recombinant RNA molecule is a dsRNA
which can be blunt-ended dsRNA, or can be dsRNA with an overhang at
one or both ends (termini); the overhang can be a single nucleotide
or 2, 3, 4, 5, 6, or more nucleotides, and can be located on the 5'
end or on the 3' end of a strand. In embodiments, the recombinant
RNA molecule is a dsRNA which can be chemically synthesized, or can
be produced by expression in a microorganism, by expression in a
plant cell, or by microbial fermentation. In embodiments, the
recombinant RNA molecule is a dsRNA of a length greater than that
which is typical of naturally occurring regulatory small RNAs (such
as endogenously produced siRNAs and mature mRNAs), i. e., the
polynucleotide is double-stranded RNA of al least about 30
contiguous base-pairs in length. In embodiments, the recombinant
RNA molecule is a dsRNA with a length of between about 50 to about
500 base-pairs.
[0036] Embodiments of the insecticidal composition include those
wherein the insect is Spodoptera frugiperda (fall armyworm) and the
target gene includes a DNA sequence selected from the group
consisting of SEQ ID NOs:1-3; wherein the insect is Lygus hesperus
(western tarnished plant bug) and the target gene includes a DNA
sequence selected from the group consisting of SEQ ID NOs:4-7, 43,
and 44; wherein the insect is Euschistus heros (neotropical brown
stink bug) and the target gene includes a DNA sequence selected
from the group consisting of SEQ ID NOs:8-9; and wherein the insect
is Plutella xylostella (diamondback moth) and the target gene
includes a DNA sequence selected from the group consisting of SEQ
ID NOs:10-12. Other embodiments of the insecticidal composition
include those wherein the insect is Spodoptera frugiperda (fall
armyworm) and the recombinant RNA molecule includes at least one
RNA strand having a sequence of about 95% to about 100% (e. g.,
about 95%, about 96%, about 97%, about 98%, about 99%, or about
100%) identity or complementarily with a sequence selected from the
group consisting of SEQ ID NOs:17-19; wherein the insect is Lygus
hesperus (western tarnished plant bug) and the recombinant RNA
molecule includes at least one RNA strand having a sequence of
about 95% to about 100% (e. g., about 95%, about 96%, about 97%,
about 98%, about 99%, or about 100%) identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:14-16, 22, 26, 45, and 46; wherein the insect is Euschistus
heros (neotropical brown stink bug) and the recombinant RNA
molecule includes at least one RNA strand having a sequence of
about 95% to about 100% identity or complementarity with a sequence
selected from the group consisting of SEQ ID NOs:23-25; and wherein
the insect is Plutella xylostella (diamondback moth) and the
recombinant RNA molecule includes at least one RNA strand having a
sequence of about 95% to about 100% (e. g., about 95%, about 96%,
about 97%, about 98%, about 99%, or about 100%) identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13, 20-21, and 28-29. Specific embodiments of the
insecticidal composition include those wherein the insect is
Spodoptera frugiperda (fall armyworm) and the recombinant RNA
molecule is a dsRNA including an RNA strand having a sequence
selected from the group consisting of SEQ ID NOs: 17-19; wherein
the insect is Lygus hesperus (western tarnished plant bug) and
recombinant RNA molecule is a dsRNA including an RNA strand having
a sequence selected from the group consisting of SEQ ID NOs:14-16,
22, 26, 45, and 46; wherein the insect is Euschistus heros
(neotropical brown stink bug) and recombinant RNA molecule is a
dsRNA including an RNA strand having a sequence selected from the
group consisting of SEQ ID NOs:23-25; and wherein the insect is
Plutella xylostella (diamondback moth) and recombinant RNA molecule
is a dsRNA including an RNA strand having a sequence selected from
the group consisting of SEQ ID NOs:13, 20-21, and 28-29. Other
embodiments of the insecticidal composition include those where the
recombinant RNA molecule has a sequence modified as described in
Example 5 to eliminate matches to non-target organisms, such as the
modified sequences (SEQ ID NOs:30-42) disclosed in Table 6.
[0037] In various embodiments the insecticidal composition includes
an insecticidally effective amount of a recombinant RNA molecule
that consists of naturally occurring ribonucleotides, such as those
found in naturally occurring RNA. In certain embodiments, the
polynucleotide is a combination of ribonucleotides and
deoxyribonucleotides, for example, synthetic polynucleotides
consisting mainly of ribonucleotides but with one or more terminal
deoxyribonucleotides or one or more terminal
dideoxyribonucleotides. In certain embodiments, the polynucleotide
includes non-canonical nucleotides such as inosine, thiouridine, or
pseudouridine. In certain embodiments, the polynucleotide includes
chemically modified nucleotides. Examples of chemically modified
oligonucleotides or polynucleotides are well known in the art; see,
for example, U.S. Patent Publication 2011/0171287, U.S. Patent
Publication 2011/0171176, U.S. Patent Publication 2011/0152353, T
J.S. Patent Publication 2011/0152346, and U.S. Patent Publication
2011/0160082, which are herein incorporated by reference.
Illustrative examples include, but arc not limited to, the
naturally occurring phosphodiester backbone of an oligonucleotide
or polynucleotide which can be partially or completely modified
with phosphorothioate, phosphorodithioate, or methylphosphonate
internucleotide linkage modifications, modified nucleoside bases or
modified sugars can be used in oligonucleotide or polynucleotide
synthesis, and oligonucleotides or polynucleotides can be labeled
with a fluorescent moiety (e. g., fluorescein or rhodamine) or
other label (e. g., biotin).
[0038] The recombinant RNA molecule of is provided by suitable
means known to one in the art. Embodiments include those wherein
the recombinant RNA molecule is chemically synthesized (e.g., by in
vitro transcription, such as transcription using a T7 polymerase or
other polymerase), produced by expression in a microorganism or in
cell culture (such as plant or insect cells grown in culture),
produced by expression in a plant cell, or produced by microbial
fermentation.
[0039] In embodiments the recombinant RNA molecule of use in this
method is provided as an isolated RNA fragment (not part of an
expression construct, i. e., lacking additional elements such as a
promoter or terminator sequences). Such recombinant RNA molecules
can be relatively short, such as single- or double-stranded RNA
molecules of between about 18 to about 300 or between about 50 to
about 500 nucleotides (for single-stranded polynucleotides) or
between about 18 to about 300 or between about 50 to about 500
base-pairs (for double-stranded polynucleotides). Embodiments
include those in which the polynucleotide is a dsRNA including a
segment having a sequence selected from the group consisting of SEQ
ID NOs:13-26, 28-29, 30-42, 45, and 46.
[0040] In embodiments, the insecticidal composition is in a form
selected from the group consisting of a solid, liquid, powder,
suspension, emulsion, spray, encapsulation, microbeads, carrier
particulates, film, matrix, soil drench, insect diet or insect
bait, and seed treatment. In embodiments, the insecticidal
composition can be applied to a seed, e. g., by soaking the seed in
a liquid insecticidal composition including the dsRNA, wherein the
seed imbibes or takes up the dsRNA into the seed interior or seed
endosperm in an effective amount to provide improved resistance to
the insect pest by the seed or a plant or seedling grown from the
seed. In some embodiments, the insecticidal composition is provided
in a form that is ingested by the insect, such as in a liquid,
emulsion, or powder applied to a plant on which the insect feeds,
or in the form of bait. The insecticidal compositions can further
include one or more components selected from the group consisting
of a carrier agent, a surfactant, an organosilicone, a
polynucleotide herbicidal molecule, a non-polynucleotide herbicidal
molecule, a non-polynucleotide pesticide, a safener, an insect
attractant, and an insect growth regulator. The insecticidal
compositions can further include at least one pesticidal agent
selected from the group consisting of a patatin, a plant lectin, a
phytoecdysteroid, a Bacillus thuringiensis insecticidal protein, a
Xenorhabdus insecticidal protein, a Photorhabdus insecticidal
protein, a Bacillus laterosporous insecticidal protein, and a
Bacillus sphaericus insecticidal protein. In embodiments, the
combination of the recombinant RNA molecule and the pesticidal
agent provides a level of insect control that is synergistic, i.
e., greater than the sum of the effects of the recombinant RNA
molecule and the pesticidal agent components if tested
separately.
[0041] A related aspect of the invention is a plant treated with an
insecticidal composition as described herein, or a seed of the
treated plant, wherein the plant exhibits improved resistance to
the insect. In embodiments, the plant exhibiting improved
resistance to the insect is characterized by improved yield, when
compared to a plant not treated with the insecticidal
composition.
Methods of Providing Plants with Improved Insect Resistance
[0042] Another aspect of the invention provides a method of
providing a plant having improved resistance to an insect,
including expressing in the plant a recombinant DNA construct
including DNA encoding RNA that includes at least one silencing
element essentially identical or essentially complementary to a
fragment of a target gene sequence of the insect, wherein the
target gene sequence is selected from the group consisting of SEQ
ID NOs:1-12 and 43-44, and wherein ingestion of the RNA by the
insect results in mortality or stunting in the insect.
[0043] In embodiments of the method, the silencing element has a
sequence of about 95% to about 100% (e. g., about 95%, about 96%,
about 97%, about 98%, about 99%, or about 100%) identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 45, and 46. In specific embodiments,
the silencing element is RNA that forms double-stranded RNA from
two separate, essentially complementary strands, wherein at least
one RNA strand includes a sequence of about 95% to about 100% (e.
g., about 95%, about 96%, about 97%, about 98%, about 99%, or about
100%) identity or complementarity with a sequence selected from the
group consisting of SEQ ID NOs:13-26, 28-29, 45, and 46. In other
embodiments, the silencing clement is RNA that forms
double-stranded RNA from a single self-hybridizing hairpin
transcript, wherein one "arm" of the hairpin includes a sequence of
about 95% to about 100% (e. g., about 95%, about 96%, about 97%,
about 98%, about 99%, or about 100%) identity or complementarity
with a sequence selected from the group consisting of SEQ ID
NOs:13-26, 28-29, 45, and 46. Other embodiments include those where
the silencing element has a sequence modified as described in
Example 5 to eliminate matches to non-target organisms, such as the
modified sequences (SEQ ID NOs:30-42) disclosed in Table 6.
[0044] In embodiments of the method, the recombinant DNA construct
further includes a heterologous promoter operably linked to the DNA
encoding RNA that includes at least one silencing element, wherein
the heterologous promoter is functional in a plant cell. Promoters
functional in a plant cell include those listed under the heading
"Promoters".
[0045] In embodiments of the method, the recombinant DNA construct
is expressed in the plant by means of transgenic expression or
transient expression. In some embodiments, the method further
includes expression in the plant of at least one pesticidal agent
selected from the group consisting of a patatin, a plant lectin, a
phytoecdysteroid, a Bacillus thuringiensis insecticidal protein, a
Xenorhabdus insecticidal protein, a Photorhabdus insecticidal
protein, a Bacillus laterosporous insecticidal protein, and a
Bacillus sphaericus insecticidal protein. The pesticidal agent can
be expressed from the same recombinant DNA construct that includes
the DNA encoding at least one silencing element, or from a
different recombinant DNA construct.
[0046] A related aspect of the invention is a plant having improved
resistance to an insect, or the seed of such a plant, wherein the
plant is provided by the method including expressing in the plant a
recombinant DNA construct including DNA encoding RNA that includes
at least one silencing element essentially identical or essentially
complementary to a fragment of a target gene sequence of the
insect, wherein the target gene sequence is selected from the group
consisting of SEQ ID NOs:1-12 and 43-44, and wherein ingestion of
the RNA by the insect results in mortality or stunting in the
insect. In embodiments, the plant exhibiting improved resistance to
the insect is characterized by improved yield, when compared to a
plant not treated with the insecticidal composition. Also
encompassed by the invention are fruit, seed, or propagatable parts
of the plant provided by this method and exhibiting improved
resistance to the insect.
[0047] A related aspect of the invention is a plant or seedling
having improved resistance to an insect, wherein the plant or
seedling is grown from a seed treated with a recombinant DNA
construct including DNA encoding RNA that includes at least one
silencing element essentially identical or essentially
complementary to a fragment of a target gene sequence of the
insect, wherein the target gene sequence is selected from the group
consisting of SEQ ID NOs:1-12 and 43-44; alternatively the plant is
grown from a seed directly treated with the RNA that includes at
least one silencing element essentially identical or essentially
complementary to a fragment of a target gene sequence of the
insect, wherein the target gene sequence is selected from the group
consisting of SEQ ID NOs:1-12 and 43-44. In embodiments, the
recombinant DNA construct (or the encoded RNA that includes at
least one silencing element) is applied by soaking the seed in a
liquid composition including the recombinant DNA construct (or the
encoded RNA that includes at least one silencing element), wherein
the seed imbibes or takes up the DNA or encoded RNA into the seed
interior or seed endosperm in an effective amount to provide
improved resistance to the insect pest by a plant or seedling grown
from the seed.
Recombinant DNA Constructs Encoding RNA for Insect Control
[0048] Another aspect of the invention provides a recombinant DNA
construct including a heterologous promoter operably linked to DNA
encoding an RNA transcript including a sequence of about 95% to
about 100% (e. g., about 95%, about 96%, about 97%, about 98%,
about 99%, or about 100%) identity or complementarity with a
sequence selected from the group consisting of SEQ ID NOs:13-26,
28-29, 30-42, 45, and 46.
[0049] In specific embodiments, the RNA transcript forms
double-stranded RNA from two separate, essentially complementary
strands (e. g., where one strand is encoded on a separate DNA
construct or where the two strands are encoded on separate sections
of the DNA encoding an RNA transcript, and which are separately
transcribed or made separate, for example, by the action of a
recombinase or nuclease), wherein at least one RNA strand includes
a sequence of about 95% to about 100% (e. g., about 95%, about 96%,
about 97%, about 98%, about 99%, or about 100%) identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In other
embodiments, the RNA transcript forms double-stranded RNA from a
single self-hybridizing hairpin transcript, wherein one "arm" of
the hairpin includes a sequence of about 95% to about 100% (e. g.,
about 95%, about 96%, about 97%, about 98%, about 99%, or about
100%) identity or complementarity with a sequence selected from the
group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46.
[0050] Embodiments of the recombinant DNA construct include those
wherein the heterologous promoter is functional for expression of
the RNA transcript in a bacterium. In embodiments where the
recombinant DNA construct is to be expressed in a bacterium, the
bacterium is selected from the group consisting of Escherichia
coli, Bacillus species, Pseudomonas species, Xenorhabdus species,
or Photorhabdus species. In other embodiments, the recombinant DNA
construct includes a heterologous promoter that is functional in a
plant cell. In embodiments, the recombinant DNA construct is
contained in a recombinant vector, such as a recombinant plant
virus vector or a recombinant baculovirus vector. In embodiments,
the recombinant DNA construct is integrated into a plant chromosome
or plastid, e. g., by stable transformation.
[0051] Related aspects of the invention include a transgenic plant
cell having in its genome the recombinant DNA construct, and a
transgenic plant including such a transgenic plant cell. Transgenic
plant cells and plants are made by methods known in the art, such
as those described under the heading "Making and Using Transgenic
Plant Cells and Transgenic Plants". Further aspects of the
invention include a commodity product produced from such a
transgenic plant, and transgenic progeny seed or propagatable plant
part of the transgenic plant.
Related Information and Techniques
Plants
[0052] The methods and compositions described herein for treating
and protecting plants from insect infestations are useful across a
broad range of plants. Suitable plants in which the methods and
compositions disclosed herein can be used include, but are not
limited to, cereals and forage grasses (rice, maize, wheat, barley,
oat, sorghum, pearl millet, finger millet, cool-season forage
grasses, and bahiagrass), oilseed crops (soybean, oilseed brassicas
including canola and oilseed rape, sunflower, peanut, flax, sesame,
and safflower), legume grains and forages (common bean, cowpea,
pea, faba bean, lentil, tepary bean, Asiatic beans, pigeonpea,
vetch, chickpea, lupine, alfalfa, and clovers), temperate fruits
and nuts (apple, pear, peach, plums, berry crops, cherries, grapes,
olive, almond, and Persian walnut), tropical and subtropical fruits
and nuts (citrus including limes, oranges, and grapefruit; banana
and plantain, pineapple, papaya, mango, avocado, kiwifruit,
passionfruit, and persimmon), vegetable crops (solanaceous plants
including tomato, eggplant, and peppers; vegetable brassicas;
radish, carrot, cucurbits, alliums, asparagus, and leafy
vegetables), sugar, tuber, and fiber crops (sugarcane, sugar beet,
stevia, potato, sweet potato, cassava, and cotton), plantation
crops, ornamentals, and turf grasses (tobacco, coffee, cocoa, tea,
rubber tree, medicinal plants, ornamentals, and turf grasses), and
forest tree species.
Additional Construct Elements
[0053] Embodiments of the polynucleotides and nucleic acid
molecules of this invention can include additional elements, such
as promoters, small RNA recognition sites, aptamers or ribozymes,
additional and additional expression cassettes for expressing
coding sequences (e. g., to express a transgene such as an
insecticidal protein or selectable marker) or non-coding sequences
(e. g., to express additional suppression elements). For example,
an aspect of this invention provides a recombinant DNA construct
including a heterologous promoter operably linked to DNA encoding
an RNA transcript that includes a sequence of about 95% to about
100% identity or complementarity with a sequence selected from the
group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46. In
another embodiment, a recombinant DNA construct including a
promoter operably linked to DNA encoding: (a) an RNA transcript
that includes a sequence of about 95% to about 100% identity or
complementarity with a sequence selected from the group consisting
of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46, and (b) an aptamer,
is stably integrated into the plant's genome from where RNA
transcripts including the RNA aptamer and the RNA silencing element
are expressed in cells of the plant; the aptamer serves to guide
the RNA silencing element to a desired location in the cell. In
another embodiment, inclusion of one or more recognition sites for
binding and cleavage by a small RNA (e. g., by a miRNA or an siRNA
that is expressed only in a particular cell or tissue) allows for
more precise expression patterns in a plant, wherein the expression
of the recombinant DNA construct is suppressed where the small RNA
is expressed. Such additional elements are described below.
Promoters
[0054] Promoters of use in the invention are functional in the cell
in which the construct is intended to be transcribed. Generally
these promoters are heterologous promoters, as used in recombinant
constructs, i. e., they are not in nature found to be operably
linked to the other nucleic elements used in the constructs of this
invention. In various embodiments, the promoter is selected from
the group consisting of a constitutive promoter, a spatially
specific promoter, a temporally specific promoter, a
developmentally specific promoter, and an inducible promoter. In
many embodiments the promoter is a promoter functional in a plant,
for example, a pol II promoter, a pol III promoter, a pol IV
promoter, or a pol V promoter.
[0055] Non-constitutive promoters suitable for use with the
recombinant DNA constructs of this invention include spatially
specific promoters, temporally specific promoters, and inducible
promoters. Spatially specific promoters can include organelle-,
cell-, tissue-, or organ-specific promoters (e.g., a
plastid-specific, a root-specific, a pollen-specific, or a
seed-specific promoter for expression in plastids, roots, pollen,
or seeds, respectively). In many cases a seed-specific,
embryo-specific, aleurone-specific, or endosperm-specific promoter
is especially useful. Temporally specific promoters can include
promoters that tend to promote expression during certain
developmental stages in a plant's growth cycle, or during different
times of day or night, or at different seasons in a year. Inducible
promoters include promoters induced by chemicals or by
environmental conditions such as, but not limited to, biotic or
abiotic stress (e. g., water deficit or drought, heat, cold, high
or low nutrient or salt levels, high or low light levels, or pest
or pathogen infection). MicroRNA promoters are useful, especially
those having a temporally specific, spatially specific, or
inducible expression pattern; examples of miRNA promoters, as well
as methods for identifying miRNA promoters having specific
expression patterns, are provided in U.S. Patent Application
Publications 2006/0200878, 2007/0199095, and 2007/0300329, which
are specifically incorporated herein by reference. An
expression-specific promoter can also include promoters that are
generally constitutively expressed but at differing degrees or
"strengths" of expression, including promoters commonly regarded as
"strong promoters" or as "weak promoters".
[0056] Promoters of particular interest include the following
examples: an opaline synthase promoter isolated from T-DNA of
Agrobacterium; a cauliflower mosaic virus 35S promoter; enhanced
promoter elements or chimeric promoter elements such as an enhanced
cauliflower mosaic virus (CaMV) 35S promoter linked to an enhancer
element (an intron from heat shock protein 70 of Zea mays); root
specific promoters such as those disclosed in U.S. Pat. Nos.
5,837,848; 6,437,217 and 6,426,446; a maize L3 oleosin promoter
disclosed in U.S. Pat. No. 6,433,252; a promoter for a plant
nuclear gene encoding a plastid-localized aldolase disclosed in
U.S. Patent Application Publication 2004/0216189; cold-inducible
promoters disclosed in U.S. Pat. No. 6,084,089; salt-inducible
promoters disclosed in U.S. Pat. No. 6,140,078; light-inducible
promoters disclosed in U.S. Pat. No. 6,294,714; pathogen-inducible
promoters disclosed in U.S. Pat. No. 6,252,138; and water
deficit-inducible promoters disclosed in U.S. Patent Application
Publication 2004/0123347 A1. All of the above-described patents and
patent publications disclosing promoters and their use, especially
in recombinant DNA constructs functional in plants are incorporated
herein by reference.
[0057] Plant vascular- or phloem-specific promoters of interest
include a rolC or rolA promoter of Agrobacterium rhizogenes, a
promoter of a Agrobacterium tumefaciens T-DNA gene 5, the rice
sucrose synthase RSs1 gene promoter, a Commelina yellow mottle
badnavirus promoter, a coconut foliar decay virus promoter, a rice
tungro bacilliform virus promoter, the promoter of a pea glutamine
synthase GS3A gene, a invCD111 and invCD141 promoters of a potato
invertase genes, a promoter isolated from Arabidopsis shown to have
phloem-specific expression in tobacco by Kertbundit et al. (1991)
Proc. Natl. Acad. Sci. U S A., 88:5212-5216, a VAHOX1 promoter
region, a pea cell wall invertase gene promoter, an acid invertase
gene promoter from carrot, a promoter of a sulfate transporter gene
Sultr1;3, a promoter of a plant sucrose synthase gene, and a
promoter of a plant sucrose transporter gene.
[0058] Promoters suitable for use with a recombinant DNA construct
or polynucleotide of this invention include polymerase II ("pol
II") promoters and polymerase III ("pol III") promoters. RNA
polymerase II transcribes structural or catalytic RNAs that arc
usually shorter than 400 nucleotides in length, and recognizes a
simple run of T residues as a termination signal; it has been used
to transcribe siRNA duplexes (see, e. g., Lu et al. (2004) Nucleic
Acids Res., 32:e171). Pol II promoters are therefore preferred in
certain embodiments where a short RNA transcript is to be produced
from a recombinant DNA construct of this invention. In one
embodiment, the recombinant DNA construct includes a pol II
promoter to express an RNA transcript flanked by self-cleaving
ribozyme sequences (e. g., self-cleaving hammerhead ribozymes),
resulting in a processed RNA, such as a single-stranded RNA that
binds to the transcript of the Leptinotarsa target gene, with
defined 5' and 3' ends, free of potentially interfering flanking
sequences. An alternative approach uses pol III promoters to
generate transcripts with relatively defined 5' and 3' ends, i. e.,
to transcribe an RNA with minimal 5' and 3' flanking sequences. In
some embodiments, Pol III promoters (e. g., U6 or H1 promoters) are
preferred for adding a short AT-rich transcription termination site
that results in 2 base-pair overhangs (UU) in the transcribed RNA;
this is useful, e. g., for expression of siRNA-type constructs. Use
of pol III promoters for driving expression of siRNA constructs has
been reported; see van de Wetering et al. (2003) EMBO Rep., 4:
609-615, and Tuschl (2002) Nature Biotechnol., 20: 446-448.
Baculovirus promoters such as baculovirus polyhedrin and p10
promoters are known in the art and commercially available; see, e.
g., Invitrogen's "Guide to Baculovirus Expression Vector Systems
(BEVS) and Insect Cell Culture Techniques", 2002 (Life
Technologies, Carlsbad, Calif.) and F. J. Haines et al.
"Baculovirus Expression Vectors", undated (Oxford Expression
Technologies, Oxford, UK).
[0059] The promoter clement can include nucleic acid sequences that
arc not naturally occurring promoters or promoter elements or
homologues thereof but that can regulate expression of a gene.
Examples of such "gene independent" regulatory sequences include
naturally occurring or artificially designed RNA sequences that
include a ligand-binding region or aptamer (see "Aptamers", below)
and a regulatory region (which can be cis-acting). See, for
example, Isaacs et al. (2004) Nat. Biotechnol., 22:841-847, Bayer
and Smolke (2005) Nature Biotechnol., 23:337-343, Mandal and
Breaker (2004) Nature Rev. Mol. Cell Biol., 5:451-463, Davidson and
Ellington (2005) Trends Biotechnol., 23:109-112, Winkler et al.
(2002) Nature, 419:952-956, Sudarsan et al. (2003) RNA, 9:644-647,
and Mandal and Breaker (2004) Nature Struct. Mol. Biol., 11:29-35.
Such "riboregulators" could be selected or designed for specific
spatial or temporal specificity, for example, to regulate
translation of DNA that encodes a silencing element for suppressing
a target gene only in the presence (or absence) of a given
concentration of the appropriate ligand. One example is a
riboregulator that is responsive to an endogenous ligand (e. g.,
jasmonic acid or salicylic acid) produced by the plant when under
stress (e. g., abiotic stress such as water, temperature, or
nutrient stress, or biotic stress such as attach by pests or
pathogens); under stress, the level of endogenous ligand increases
to a level sufficient for the riboregulator to begin transcription
of the DNA that encodes a silencing element for suppressing a
target gene.
Recombinase Sites
[0060] hi some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes DNA encoding one or more
site-specific recombinase recognition sites. In one embodiment, the
recombinant DNA construct includes at least a pair of loxP sites,
wherein site-specific recombination of DNA between the loxP sites
is mediated by a Cre recombinase. The position and relative
orientation of the loxP sites is selected to achieve the desired
recombination; for example, when the loxP sites are in the same
orientation, the DNA between the loxP sites is excised in circular
form. In another embodiment, the recombinant DNA construct includes
DNA encoding one loxP site; in the presence of Cre recombinase and
another DNA with a loxP site, the two DNAs are recombined.
Aptamers
[0061] In some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes DNA that is processed to
an RNA aptamer, that is, an RNA that binds to a ligand through
binding mechanism that is not primarily based on Watson-Crick
base-pairing (in contrast, for example, to the base-pairing that
occurs between complementary, anti-parallel nucleic acid strands to
form a double-stranded nucleic acid structure). See, for example,
Ellington and Szostak (1990) Nature, 346:818-822. Examples of
aptamers can be found, for example, in the public Aptamer Database,
available on line at aptamer.icmb.utexas.edu (Lee et al. (2004)
Nucleic Acids Res., 32(1):D95-100). Aptamers useful in the
invention can, however, be monovalent (binding a single ligand) or
multivalent (binding more than one individual ligand, e. g.,
binding one unit of two or more different ligands).
[0062] Ligands useful in the invention include any molecule (or
part of a molecule) that can be recognized and be bound by a
nucleic acid secondary structure by a mechanism not primarily based
on Watson-Crick base pairing. In this way, the recognition and
binding of ligand and aptamer is analogous to that of antigen and
antibody, or of biological effector and receptor. Ligands can
include single molecules (or part of a molecule), or a combination
of two or more molecules (or parts of a molecule), and can include
one or more macromolecular complexes (e. g., polymers, lipid
bilayers, liposomes, cellular membranes or other cellular
structures, or cell surfaces). Examples of specific ligands include
vitamins such as coenzyme B.sub.12 and thiamine pyrophosphate,
flavin mononucleotide, guanine, adenosine, S-adenosylmethionine,
S-adenosylhomocysteine, coenzyme A, lysine, tyrosine, dopamine,
glucosamine-6-phosphate, caffeine, theophylline, antibiotics such
as chloramphenicol and neomycin, herbicides such as glyphosate and
dicamba, proteins including viral or phage coat proteins and
invertebrate epidermal or digestive tract surface proteins, and
RNAs including viral RNA, transfer-RNAs (t-RNAs), ribosomal RNA
(rRNA), and RNA polymerases such as RNA-dependent RNA polymerase
(RdRP). One class of RNA aptamers useful in the invention are
"thermoswitches" that do not bind a ligand but are thermally
responsive, that is to say, the aptamer's conformation is
determined by temperature; see, for example, Box 3 in Mandal and
Breaker (2004) Nature Rev. Mol. Cell Biol., 5:451-463.
Transgene Transcription Units
[0063] In some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes a transgene transcription
unit. A transgene transcription unit includes DNA sequence encoding
a gene of interest, e. g., a natural protein or a heterologous
protein. A gene of interest can be any coding or non-coding
sequence from any species (including, but not limited to,
non-eukaryotes such as bacteria, and viruses; fungi, protists,
plants, invertebrates, and vertebrates. Particular genes of
interest are genes encoding at least one pesticidal agent selected
from the group consisting of a patatin, a plant lectin, a
phytoecdysteroid, a phytoecdysteroid, a Bacillus thuringiensis
insecticidal protein, a Xenorhabdus insecticidal protein, a
Photorhabdus insecticidal protein, a Bacillus laterosporous
insecticidal protein, and a Bacillus sphaericus insecticidal
protein. The transgene transcription unit can further include 5' or
3' sequence or both as required for transcription of the
transgene.
Introns
[0064] In some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes DNA encoding a spliceable
intron. By "intron" is generally meant a segment of DNA (or the RNA
transcribed from such a segment) that is located between exons
(protein-encoding segments of the DNA or corresponding transcribed
RNA), wherein, during maturation of the messenger RNA, the intron
present is enzymatically "spliced out" or removed from the RNA
strand by a cleavage/ligation process that occurs in the nucleus in
eukaryotes. The term "intron" is also applied to non-coding DNA
sequences that are transcribed to RNA segments that can be spliced
out of a maturing RNA transcript, but are not introns found between
protein-coding exons. One example of these are spliceable sequences
that that have the ability to enhance expression in plants (in some
cases, especially in monocots) of a downstream coding sequence;
these spliceable sequences are naturally located in the 5'
untranslated region of some plant genes, as well as in some viral
genes (e. g., the tobacco mosaic virus 5' leader sequence or
"omega" leader described as enhancing expression in plant genes by
Gallie and Walbot (1992) Nucleic Acids Res., 20:4631-4638). These
spliceable sequences or "expression-enhancing introns" can be
artificially inserted in the 5' untranslated region of a plant gene
between the promoter and any protein-coding exons. Examples of such
expression-enhancing introns include, but are not limited to, a
maize alcohol dehydrogenase (Zm-Adh1), a maize Bronze-1
expression-enhancing intron, a rice actin 1 (Os-Act1) intron, a
Shrunken-1 (Sh-1) intron, a maize sucrose synthase intron, a heat
shock protein 18 (hsp18) intron, and an 82 kilodalton heat shock
protein (hsp82) intron. U.S. Pat. Nos. 5,593,874 and 5,859,347,
specifically incorporated by reference herein, describe methods of
improving recombinant DNA constructs for use in plants by inclusion
of an expression-enhancing intron derived from the 70 kilodalton
maize heat shock protein (hsp70) in the non-translated leader
positioned 3' from the gene promoter and 5' from the first
protein-coding exon.
Ribozymes
[0065] In some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes DNA encoding one or more
ribozymes. Ribozymes of particular interest include a self-cleaving
ribozyme, a hammerhead ribozyme, or a hairpin ribozyme. In one
embodiment, the recombinant DNA construct includes DNA encoding one
or more ribozymes that serve to cleave the transcribed RNA to
provide defined segments of RNA, such as silencing elements for
suppressing a Leptinotarsa target gene.
Gene Suppression Elements
[0066] In some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes DNA encoding additional
gene suppression element for suppressing a target gene other than a
Leptinotarsa target gene. The target gene to be suppressed can
include coding or non-coding sequence or both.
[0067] Suitable gene suppression elements are described in detail
in U. S. Patent Application Publication 2006/0200878, which
disclosure is specifically incorporated herein by reference, and
include one or more of: [0068] (a) DNA that includes at least one
anti-sense DNA segment that is anti-sense to at least one segment
of the gene to be suppressed; [0069] (b) DNA that includes multiple
copies of at least one anti-sense DNA segment that is anti-sense to
at least one segment of the gene to be suppressed; [0070] (c) DNA
that includes at least one sense DNA segment that is at least one
segment of the gene to be suppressed; [0071] (d) DNA that includes
multiple copies of at least one sense DNA segment that is at least
one segment of the gene to be suppressed; [0072] (e) DNA that
transcribes to RNA for suppressing the gene to be suppressed by
forming double-stranded RNA and includes at least one anti-sense
DNA segment that is anti-sense to at least one segment of the gene
to be suppressed and at least one sense DNA segment that is at
least one segment of the gene to be suppressed; [0073] (f) DNA that
transcribes to RNA for suppressing the gene to be suppressed by
forming a single double-stranded RNA and includes multiple serial
anti-sense DNA segments that are anti-sense to at least one segment
of the gene to he suppressed and multiple serial sense DNA segments
that are at least one segment of the gene to be suppressed; [0074]
(g) DNA that transcribes to RNA for suppressing the gene to be
suppressed by forming multiple double strands of RNA and includes
multiple anti-sense DNA segments that are anti-sense to at least
one segment of the gene to be suppressed and multiple sense DNA
segments that are at least one segment of the gene to be
suppressed, and wherein the multiple anti-sense DNA segments and
the multiple sense DNA segments are arranged in a series of
inverted repeats; [0075] (h) DNA that includes nucleotides derived
from a plant miRNA; [0076] (i) DNA that includes nucleotides of a
siRNA; [0077] (j) DNA that transcribes to an RNA aptamer capable of
binding to a ligand; and [0078] (k) DNA that transcribes to an RNA
aptamer capable of binding to a ligand, and DNA that transcribes to
regulatory RNA capable of regulating expression of the gene to be
suppressed, wherein the regulation is dependent on the conformation
of the regulatory RNA, and the conformation of the regulatory RNA
is allosterically affected by the binding slate of the RNA
aptamer.
[0079] In some embodiments, an intron is used to deliver a gene
suppression element in the absence of any protein-coding exons
(coding sequence). In one example, an intron, such as an
expression-enhancing intron (preferred in certain embodiments), is
interrupted by embedding within the intron a gene suppression
element, wherein, upon transcription, the gene suppression element
is excised from the intron. Thus, protein-coding exons are not
required to provide the gene suppressing function of the
recombinant DNA constructs disclosed herein.
Transcription Regulatory Elements
[0080] In some embodiments, the recombinant DNA construct or
polynucleotide of this invention includes DNA encoding a
transcription regulatory element. Transcription regulatory elements
include elements that regulate the expression level of the
recombinant DNA construct of this invention (relative to its
expression in the absence of such regulatory elements). Examples of
suitable transcription regulatory elements include riboswitches
(cis- or trans-acting), transcript stabilizing sequences, and miRNA
recognition sites, as described in detail in U. S. Patent
Application Publication 2006/0200878, specifically incorporated
herein by reference.
Making and Using Transgenic Plant Cells and Transgenic Plants
[0081] Transformation of a plant can include any of several
well-known methods and compositions. Suitable methods for plant
transformation include virtually any method by which DNA can be
introduced into a cell. One method of plant transformation is
microprojectile bombardment, for example, as illustrated in U.S.
Pat. No. 5,015,580 (soybean), U.S. Pat. No. 5,538,880 (maize), U.S.
Pat. No. 5,550,318 (maize), U.S. Pat. No. 5,914,451 (soybean), U.S.
Pat. No. 6,153,812 (wheat), U.S. Pat. No. 6,160,208 (maize), U.S.
Pat. No. 6,288,312 (rice), U.S. Pat. No. 6,365,807 (rice), and U.S.
Pat. No. 6,399,861 (maize), and U.S. Pat. No. 6,403,865 (maize),
all of which are incorporated by reference for enabling the
production of transgenic plants.
[0082] Another useful method of plant transformation is
Agrobacterium-mediated transformation by means of Agrobacterium
containing a binary Ti plasmid system, wherein the Agrobacterium
carries a first Ti plasmid and a second, chimeric plasmid
containing at least one T-DNA border of a wild-type Ti plasmid, a
promoter functional in the transformed plant cell and operably
linked to a polynucleotide or recombinant DNA construct of this
invention. See, for example, the binary system described in U.S.
Pat. No. 5,159,135, incorporated by reference. Also see De Framond
(1983) Biotechnology, 1:262-269; and Hoekema et al., (1983) Nature,
303:179. In such a binary system, the smaller plasmid, containing
the T-DNA border or borders, can be conveniently constructed and
manipulated in a suitable alternative host, such as E. coli, and
then transferred into Agrobacterium.
[0083] Detailed procedures for Agrobacterium-mediated
transformation of plants, especially crop plants, include
procedures disclosed in U.S. Pat. Nos. 5,004,863, 5,159,135, and
5,518,908 (cotton); U.S. Pat. Nos. 5,416,011, 5,569,834, 5,824,877
and 6,384,301 (soybean); U.S. Pat. Nos. 5,591,616 and 5,981,840
(maize); U.S. Pat. No. 5,463,174 (brassicas including canola), U.S.
Pat. No. 7,026,528 (wheat), and U.S. Pat. No. 6,329,571 (rice), and
in U.S. Patent Application Publications 2004/0244075 (maize) and
2001/0042257 A1 (sugar beet), all of which are specifically
incorporated by reference for enabling the production of transgenic
plants. U.S. Patent Application Publication 2011/0296555 discloses
in Example 5 the transformation vectors (including the vector
sequences) and detailed protocols for transforming maize, soybean,
canola, cotton, and sugarcane) and is specifically incorporated by
reference for enabling the production of transgenic plants. Similar
methods have been reported for many plant species, both dicots and
monocots, including, among others, peanut (Cheng et al. (1996)
Plant Cell Rep., 15: 653); asparagus (Bytebier et al. (1987) Proc.
Natl. Acad. Sci. U.S.A., 84:5345); barley (Wan and Lemaux (1994)
Plant Physiol., 104:37); rice (Toriyama et al. (1988)
Bio/Technology, 6:10; Zhang et al. (1988) Plant Cell Rep., 7:379;
wheat (Vasil et al. (1992) Bio/Technology,10:667; Becker et al.
(1994) Plant J. , 5:299), alfalfa (Masoud et al. (1996) Transgen.
Res., 5:313); and tomato (Sun et al. (2006) Plant Cell Physiol.,
47:426-431). Sec also a description of vectors, transformation
methods, and production of transformed Arabidopsis thaliana plants
where transcription factors are constitutively expressed by a
CaMV35S promoter, in U.S. Patent Application Publication
2003/0167537 A1, incorporated by reference. Transformation methods
specifically useful for solanaceous plants are well known in the
art. See, for example, publicly described transformation methods
for tomato (Sharma et al. (2009), J. Biosci., 34:423-433), eggplant
(Arpaia et al. (1997) Theor. Appl. Genet., 95:329-334), potato
(Bannerjee et al. (2006) Plant Sci., 170:732-738; Chakravarly et
al. (2007) Amer. J. Potato Res., 84:301-311; S. Millam
"Agrobacterium-mediated transformation of potato." Chapter 19
(pp.257-270), "Transgenic Crops of the World: Essential Protocols",
Ian S. Curtis (editor), Springer, 2004), and peppers (Li et al.
(2003) Plant Cell Reports, 21: 785-788). Stably transgenic potato,
tomato, and eggplant have been commercially introduced in various
regions; see, e. g., K. Redenbaugh et al. "Safety Assessment of
Genetically Engineered Fruits and Vegetables: A Case Study of the
FLAVR SAVR.TM. Tomato", CRC Press, Boca Raton, 1992, and the
extensive publicly available documentation of commercial
genetically modified crops in the GM Crop Database; see: CERA.
(2012). GM Crop Database. Center for Environmental Risk Assessment
(CERA), ILSI Research Foundation, Washington D.C., available
electronically at www.cera-gmc.org/?action=gm_crop_database.
Various methods of transformation of other plant species are well
known in the art, see, for example, the encyclopedic reference,
"Compendium of Transgenic Crop Plants", edited by Chittaranjan Kole
and Timothy C. Hall, Blackwell Publishing Ltd., 2008; ISBN
978-1-405-16924-0 (available electronically at
mrw.interscience.wiley.com/einrw/9781405181099/htp/toc), which
describes transformation procedures for cereals and forage grasses
(rice, maize, wheat, barley, oat, sorghum, pearl millet, finger
millet, cool-season forage grasses, and bahiagrass), oilseed crops
(soybean, oilseed brassicas, sunflower, peanut, flax, sesame, and
safflower), legume grains and forages (common bean, cowpea, pea,
faba bean, lentil, tepary bean, Asiatic beans, pigeonpea, vetch,
chickpea, lupine, alfalfa, and clovers). temperate fruits and nuts
(apple, pear, peach, plums, berry crops, cherries, grapes, olive,
almond, and Persian walnut), tropical and subtropical fruits and
nuts (citrus, grapefruit, banana and plantain, pineapple, papaya,
mango, avocado, kiwifruit, passionfruit, and persimmon), vegetable
crops (tomato, eggplant, peppers, vegetable brassicas, radish,
carrot, cucurbits, alliums, asparagus, and leafy vegetables),
sugar, tuber, and fiber crops (sugarcane, sugar beet, stevia,
potato, sweet potato, cassava, and cotton), plantation crops,
ornamentals, and turf grasses (tobacco, coffee, cocoa, tea, rubber
tree, medicinal plants, ornamentals, and turf grasses), and forest
tree species.
[0084] Transformation methods to provide transgenic plant cells and
transgenic plants containing stably integrated recombinant DNA are
preferably practiced in tissue culture on media and in a controlled
environment. "Media" refers to the numerous nutrient mixtures that
are used to grow cells in vitro, that is, outside of the intact
living organism. Recipient cell targets include, but are not
limited to, meristem cells, callus, immature embryos or parts of
embryos, and gametic cells such as microspores, pollen, sperm, and
egg cells. Any cell from which a fertile plant can be regenerated
is contemplated as a useful recipient cell for practice of this
invention. Callus can be initiated from various tissue sources,
including, but not limited to, immature embryos or parts of
embryos, seedling apical meristems, microspores, and the like.
Those cells which are capable of proliferating as callus can serve
as recipient cells for genetic transformation. Practical
transformation methods and materials for making transgenic plants
of this invention (e. g., various media and recipient target cells,
transformation of immature embryos, and subsequent regeneration of
fertile transgenic plants) are disclosed, for example, in U.S. Pat.
Nos. 6,194,636 and 6,232,526 and U.S. Patent Application
Publication 2004/0216189, which are specifically incorporated by
reference.
[0085] In general transformation practice, DNA is introduced into
only a small percentage of target cells in any one transformation
experiment. Marker genes are generally used to provide an efficient
system for identification of those cells that are stably
transformed by receiving and integrating a transgenic DNA construct
into their genomes. Preferred marker genes provide selective
markers which confer resistance to a selective agent, such as an
antibiotic or herbicide. Any of the antibiotics or herbicides to
which a plant cell is resistant can be a useful agent for
selection. Potentially transformed cells are exposed to the
selective agent. In the population of surviving cells will be those
cells where, generally, the resistance-conferring gene is
integrated and expressed at sufficient levels to permit cell
survival. Cells can be tested further to confirm stable integration
of the recombinant DNA. Commonly used selective marker genes
include those conferring resistance to antibiotics such as
kanamycin or paromomycin (nptII), hygromycin B (aph IV) and
gentamycin (aac3 and aacC4) or resistance to herbicides such as
glufosinate (bar or pat) and glyphosate (EPSPS). Examples of useful
selective marker genes and selection agents are illustrated in U.S.
Pat. Nos. 5,550,318, 5,633,435, 5,780,708, and 6,118,047, all of
which are specifically incorporated by reference. Screenable
markers or reporters, such as markers that provide an ability to
visually identify transformants can also be employed. Examples of
useful screenable markers include, for example, a gene expressing a
protein that produces a detectable color by acting on a chromogenic
substrate (e. g., beta glucuronidase (GUS) (uidA) or luciferase
(kw)) or that itself is detectable, such as green fluorescent
protein (GFP) (gfp) or an immunogenic molecule. Those of skill in
the art will recognize that many other useful markers or reporters
are available for use.
[0086] Detecting or measuring transcription of a recombinant DNA
construct in a transgenic plant cell can be achieved by any
suitable method, including protein detection methods (e. g.,
western blots, ELISAs, and other immunochemical methods),
measurements of enzymatic activity, or nucleic acid detection
methods (e. g., Southern blots, northern blots, PCR, RT-PCR,
fluorescent in situ hybridization).
[0087] Other suitable methods for detecting or measuring
transcription in a plant cell of a recombinant polynucleotide of
this invention targetting an insect target gene include measurement
of any other trait that is a direct or proxy indication of the
level of expression of the target gene in the insect, relative to
the level of expression observed in the absence of the recombinant
polynucleotide, e. g., growth rates, mortality rates, or
reproductive or recruitment rates of the insect, or measurements of
injury (e. g., root injury) or yield loss in a plant or field of
plants infested by the insect. In general, suitable methods for
detecting or measuring transcription in a plant cell of a
recombinant polynucleotide of interest include, e. g., gross or
microscopic morphological traits, growth rates, yield, reproductive
or recruitment rates, resistance to pests or pathogens, or
resistance to biotic or abiotic stress (e. g., water deficit
stress, salt stress, nutrient stress, heat or cold stress). Such
methods can use direct measurements of a phenotypic trait or proxy
assays (e. g., in plants, these assays include plant part assays
such as leaf or root assays to determine tolerance of abiotic
stress). Such methods include direct measurements of resistance to
an invertebrate pest or pathogen (e. g., damage to plant tissues)
or proxy assays (e. g., plant yield assays, or invertebrate pest
bioassays such as the Western corn rootworm (Diabrotica virgifera
virgifera LeConte) larval bioassay described in International
Patent Application Publication WO2005/110068 A2 and U. S. Patent
Application Publication US 2006/0021087 A1, specifically
incorporated by reference, or the soybean cyst nematode bioassay
described by Steeves et al. (2006) Funci. Plant Biol., 33:991-999,
wherein cysts per plant, cysts per gram root, eggs per plant, eggs
per gram root, and eggs per cyst are measured, or the bioassays
described herein in the working Examples.
[0088] The recombinant DNA constructs of this invention can be
stacked with other recombinant DNA for imparting additional traits
(e. g., in the case of transformed plants, traits including
herbicide resistance, pest resistance, cold germination tolerance,
water deficit tolerance, and the like) for example, by expressing
or suppressing other genes. Constructs for coordinated decrease and
increase of gene expression are disclosed in U.S. Patent
Application Publication 2004/0126845 A1, specifically incorporated
by reference.
[0089] Seeds of fertile transgenic plants can be harvested and used
to grow progeny generations, including hybrid generations, of
transgenic plants of this invention that include the recombinant
DNA construct in their genome. Thus, in addition to direct
transformation of a plant with a recombinant DNA construct of this
invention, transgenic plants of this invention can be prepared by
crossing a first plant having the recombinant DNA with a second
plant lacking the construct. For example, the recombinant DNA can
be introduced into a plant line that is amenable to transformation
to produce a transgenic plant, which can be crossed with a second
plant line to introgress the recombinant DNA into the resulting
progeny. A transgenic plant of this invention can be crossed with a
plant line having other recombinant DNA that confers one or more
additional trait(s) (such as, but not limited to, herbicide
resistance, pest or disease resistance, environmental stress
resistance, modified nutrient content, and yield improvement) to
produce progeny plants having recombinant DNA that confers both the
desired target sequence expression behavior and the additional
trait(s).
[0090] In such breeding for combining traits the transgenic plant
donating the additional trait can be a male line (pollinator) and
the transgenic plant carrying the base traits can be the female
line. The progeny of this cross segregate such that some of the
plant will carry the DNA for both parental traits and some will
carry DNA for one parental trait; such plants can be identified by
markers associated with parental recombinant DNA Progeny plants
carrying DNA for both parental traits can be crossed back into the
female parent line multiple times, e. g., usually 6 to 8
generations, to produce a homozygous progeny plant with
substantially the same genotype as one original transgenic parental
line as well as the recombinant DNA of the other transgenic
parental line.
[0091] Yet another aspect of this invention is a transgenic plant
grown from the transgenic seed of this invention. This invention
contemplates transgenic plants grown directly from transgenic seed
containing the recombinant DNA as well as progeny generations of
plants, including inbred or hybrid plant lines, made by crossing a
transgenic plant grown directly from transgenic seed to a second
plant not grown from the same transgenic seed. Crossing can
include, for example, the following steps: [0092] (a) plant seeds
of the first parent plant (e. g., non-transgenic or a transgenic)
and a second parent plant that is transgenic according to the
invention; [0093] (b) grow the seeds of the first and second parent
plants into plants that bear flowers; [0094] (c) pollinate a flower
from the first parent with pollen from the second parent; and
[0095] (d) harvest seeds produced on the parent plant hearing the
fertilized flower.
[0096] It is often desirable to introgress recombinant DNA into
elite varieties, e. g., by backcrossing, to transfer a specific
desirable trait from one source to an inbred or other plant that
lacks that trait. This can be accomplished, for example, by first
crossing a superior inbred ("A") (recurrent parent) to a donor
inbred ("B") (non-recurrent parent), which carries the appropriate
gene(s) for the trait in question, for example, a construct
prepared in accordance with the current invention. The progeny of
this cross first are selected in the resultant progeny for the
desired trait to be transferred from the non-recurrent parent "B",
and then the selected progeny arc mated back to the superior
recurrent parent "A". After five or more backcross generations with
selection for the desired trait, the progeny can be essentially
hemizygous for loci controlling the characteristic being
transferred, but are like the superior parent for most or almost
all other genes. The last backcross generation would be selfed to
give progeny which are pure breeding for the gene(s) being
transferred, i. e., one or more transformation events.
[0097] Through a series of breeding manipulations, a selected DNA
construct can be moved from one line into an entirely different
line without the need for further recombinant manipulation. One can
thus produce inbred plants which are true breeding for one or more
DNA constructs. By crossing different inbred plants, one can
produce a large number of different hybrids with different
combinations of DNA constructs. In this way, plants can be produced
which have the desirable agronomic properties frequently associated
with hybrids ("hybrid vigor"), as well as the desirable
characteristics imparted by one or more DNA constructs.
[0098] In certain transgenic plant cells and transgenic plants of
this invention, it is sometimes desirable to concurrently express a
gene of interest while also modulating expression of a Leptinotarsa
target gene. Thus, in some embodiments, the transgenic plant
contains recombinant DNA further including a gene expression
element for expressing at least one gene of interest, and
transcription of the recombinant DNA construct of this invention is
preferably effected with concurrent transcription of the gene
expression element.
[0099] In some embodiments, the recombinant DNA constructs of this
invention can be transcribed in any plant cell or tissue or in a
whole plant of any developmental stage. Transgenic plants can be
derived from any monocot or dicot plant, such as, but not limited
to, plants of commercial or agricultural interest, such as crop
plants (especially crop plants used for human food or animal feed),
wood- or pulp-producing trees, vegetable plants, fruit plants, and
ornamental plants. Examples of plants of interest include grain
crop plants (such as wheat, oat, barley, maize, rye, triticale,
rice, millet, sorghum, quinoa, amaranth, and buckwheat); forage
crop plants (such as forage grasses and forage dicots including
alfalfa, vetch, clover, and the like); oilseed crop plants (such as
cotton, safflower, sunflower, soybean, canola, rapeseed, flax,
peanuts, and oil palm); tree nuts (such as walnut, cashew,
hazelnut, pecan, almond, and the like); sugarcane, coconut, date
palm, olive, sugarbeet, tea, and coffee; wood- or pulp-producing
trees; vegetable crop plants such as legumes (for example, beans,
peas, lentils, alfalfa, peanut), lettuce, asparagus, artichoke,
celery, carrot, radish, the brassicas (for example, cabbages,
kales, mustards, and other leafy brassicas, broccoli, cauliflower,
Brussels sprouts, turnip, kohlrabi), edible cucurbits (for example,
cucumbers, melons, summer squashes, winter squashes), edible
alliums (for example, onions, garlic, leeks, shallots, chives),
edible members of the Solanaceae (for example, tomatoes, eggplants,
potatoes, peppers, groundcherries), and edible members of the
Chenopodiaceae (for example, beet, chard, spinach, quinoa,
amaranth); fruit crop plants such as apple, pear, citrus fruits
(for example, orange, lime, lemon, grapefruit, and others), stone
fruits (for example, apricot, peach, plum, nectarine), banana,
pineapple, grape, kiwifruit, papaya, avocado, and berries; plants
grown for biomass or biofuel (for example, Miscanthus grasses,
switchgrass, jatropha, oil palm, eukaryotic microalgae such as
Botryococcus braunii, Chlorella spp., and Dunaliella spp., and
eukaryotic macroalgae such as Gracilaria spp., and Sargassum spp.);
and ornamental plants including ornamental flowering plants,
ornamental trees and shrubs, ornamental groundcovers, and
ornamental grasses.
[0100] This invention also provides commodity products produced
from a transgenic plant cell, plant, or seed of this invention,
including, but not limited to harvested leaves, roots, shoots,
tubers, stems, fruits, seeds, or other parts of a plant, meals,
oils, extracts, fermentation or digestion products, crushed or
whole grains or seeds of a plant, or any food or non-food product
including such commodity products produced from a transgenic plant
cell, plant, or seed of this invention. The detection of one or
more of nucleic acid sequences of the recombinant DNA constructs of
this invention in one or more commodity or commodity products
contemplated herein is de facto evidence that the commodity or
commodity product contains or is derived from a transgenic plant
cell, plant, or seed of this invention.
[0101] Generally a transgenic plant having in its genome a
recombinant DNA construct of this invention exhibits increased
resistance to an insect infestation. In various embodiments, for
example, where the transgenic plant expresses a recombinant DNA
construct of this invention that is stacked with other recombinant
DNA for imparting additional traits, the transgenic plant has at
least one additional altered trait, relative to a plant lacking the
recombinant DNA construct, selected from the group of traits
consisting of:
[0102] (a) improved abiotic stress tolerance;
[0103] (b) improved biotic stress tolerance;
[0104] (c) modified primary metabolite composition;
[0105] (d) modified secondary metabolite composition;
[0106] (e) modified trace element, carotenoid, or vitamin
composition;
[0107] (f) improved yield;
[0108] (g) improved ability to use nitrogen, phosphate, or other
nutrients;
[0109] (h) modified agronomic characteristics;
[0110] (i) modified growth or reproductive characteristics; and
[0111] (j) improved harvest, storage, or processing quality.
[0112] In some embodiments, the transgenic plant is characterized
by: improved tolerance of abiotic stress (e. g., tolerance of water
deficit or drought, heat, cold, non-optimal nutrient or salt
levels, non-optimal light levels) or of biotic stress (e. g.,
crowding, allelopathy, or wounding); by a modified primary
metabolite (e. g., fatty acid, oil, amino acid, protein, sugar, or
carbohydrate) composition; a modified secondary metabolite (e. g.,
alkaloids, terpenoids, polyketides, non-ribosomal peptides, and
secondary metabolites of mixed biosynthetic origin) composition; a
modified trace element (e. g., iron, zinc), carotenoid (e. g.,
beta-carotene, lycopene, lutein, zeaxanthin, or other carotenoids
and xanthophylls), or vitamin (e. g., tocopherols) composition;
improved yield (e. g., improved yield under non-stress conditions
or improved yield under biotic or abiotic stress); improved ability
to use nitrogen, phosphate, or other nutrients; modified agronomic
characteristics (e. g., delayed ripening; delayed senescence;
earlier or later maturity; improved shade tolerance; improved
resistance to root or stalk lodging; improved resistance to "green
snap" of stems; modified photoperiod response); modified growth or
reproductive characteristics (e. g., intentional dwarfing;
intentional male sterility, useful, e. g., in improved
hybridization procedures; improved vegetative growth rate; improved
germination; improved male or female fertility); improved harvest,
storage, or processing quality (e. g., improved resistance to pests
during storage, improved resistance to breakage, improved appeal to
consumers); or any combination of these traits.
[0113] In another embodiment, transgenic seed, or seed produced by
the transgenic plant, has modified primary metabolite (e. g., fatty
acid, oil, amino acid, protein, sugar, or carbohydrate)
composition, a modified secondary metabolite composition, a
modified trace element, carotenoid, or vitamin composition, an
improved harvest, storage, or processing quality, or a combination
of these. In another embodiment, it can be desirable to change
levels of native components of the transgenic plant or seed of a
transgenic plant, for example, to decrease levels of an allergenic
protein or glycoprotein or of a toxic metabolite.
[0114] Generally, screening a population of transgenic plants each
regenerated from a transgenic plant cell is performed to identify
transgenic plant cells that develop into transgenic plants having
the desired trait. The transgenic plants are assayed to detect an
enhanced trait, e. g., enhanced water use efficiency, enhanced cold
tolerance, increased yield, enhanced nitrogen use efficiency,
enhanced seed protein, and enhanced seed oil. Screening methods
include direct screening for the trait in a greenhouse or field
trial or screening for a surrogate trait. Such analyses are
directed to detecting changes in the chemical composition, biomass,
physiological properties, or morphology of the plant. Changes in
chemical compositions such as nutritional composition of grain are
detected by analysis of the seed composition and content of
protein, free amino acids, oil, free fatty acids, starch,
tocopherols, or other nutrients. Changes in growth or biomass
characteristics are detected by measuring plant height, stem
diameter, internode length, root and shoot dry weights, and (for
grain-producing plants such as maize, rice, or wheat) ear or seed
head length and diameter. Changes in physiological properties are
identified by evaluating responses to stress conditions, e. g.,
assays under imposed stress conditions such as water deficit,
nitrogen or phosphate deficiency, cold or hot growing conditions,
pathogen or insect attack, light deficiency, or increased plant
density. Other selection properties include days to flowering, days
to pollen shed, days to fruit maturation, fruit or tuber quality or
amount produced, days to silking in maize, leaf extension rate,
chlorophyll content, leaf temperature, stand, seedling vigor,
internode length, plant height, leaf number, leaf area, tillering,
brace roots, staying green, stalk lodging, root lodging, plant
health, fertility, green snap, and pest resistance. In addition,
phenotypic characteristics of harvested fruit, seeds, or tubers can
be evaluated.
EXAMPLES
Example 1
[0115] This example illustrates non-limiting embodiments of coding
DNA sequences useful as target genes for controlling insect species
and for making compositions and plants of this invention, and
identifies dsRNA trigger sequences useful for controlling insect
species. Orthologues to genes previously demonstrated to be
efficacious targets for RNAi-mediated mortality in western corn
rootworm were identified from insect species that have not
previously been reported to be susceptible to orally delivered RNA.
These orthologous target genes and examples of dsRNA trigger
sequences are provided in Table 1.
TABLE-US-00001 TABLE 1 Target Gene Trigger SEQ ID Target Target
Gene Source Species Target Gene Trigger SEQ ID Trigger NO. Gene ID
(common name) Annotation ID NO.* size (bp) 1 CG3762 Spodoptera
frugiperda V-ATPase subunit A T34640 17 300 (fall armyworm) 2
F38E11 Spodoptera frugiperda COPI coatomer T34644 19 301 (fall
armyworm) beta prime subunit 3 CG6223 Spodoptera frugiperda COPI
coatomer T34642 18 301 (fall armyworm) beta subunit 4 CG3762 Lygus
hesperus V-ATPase subunit A T34617 15 300 (western tarnished plant
bug) 5 CG2746 Lygus hesperus ribosomal protein T34616 14 298
(western tarnished plant bug) L19 6 F38E11 Lygus hesperus COPI
coatomer T34622 16 300 (western tarnished plant bug) beta prime
subunit 7 AT20865p Lygus hesperus ubiquitin C T42772 22 257
(western tarnished plant bug) 7 AT20865p Lygus hesperus ubiquitin C
T44045 26 302 (western tarnished plant bug) 8 CG10370 Euschistus
heros TAT binding T43718 23 300 (neotropical brown stink bug)
protein 9 AT20865p Euschistus heros ubiquitin C T43720 24 300
(neotropical brown stink bug) 9 AT20865p Euschistus heros ubiquitin
C T44042 25 302 (neotropical brown stink bug) 10 CG3762 Plutella
xylostella V-ATPase subunit A T42014 20 302 (diamondback moth) 10
CG3762 Plutella xylostella V-ATPase subunit A T42017 21 301
(diamondback moth) 10 CG3762 Plutella xylostella V-ATPase subunit A
133310 29 300 (diamondback moth) 11 F38E11.5 Plutella xylostella
COPI coatomer T32937 13 302 (diamondback moth) beta prime subunit
12 CG6223 Plutella xylostella COPI coatomer T32938 28 302
(diamondback moth) beta subunit 43 CG6223 Lygus hesperus COPI
coatomer T34619 45 301 (western tarnished plant bug) beta subunit
44 AT20865p Lygus hesperus ubiquitin C variant T42768 46 255
(western tarnished plant bug) (fragment) *Trigger sequences are
provided for the sense strand of the dsRNA trigger in 5' to 3'
direction.
[0116] The dsRNA trigger sequences that are confirmed to be
effective in suppressing a target gene in a sequence-specific
manner are useful for identifying efficacious RNA delivery agents
and formulations. The insecticidal activity of formulations
containing the dsRNA triggers can be optimized by various
techniques, such as modifying the chemical entities in the
formulation or modifying the ratio of the chemical components in
the formulation. Non-limiting examples of delivery agents and
formulations are provided in Examples 6 and 8.
Example 2
[0117] This example illustrates non-limiting embodiments of dsRNA
trigger sequences useful for suppressing or silencing a target gene
in an insect cell or causing stunting or mortality in an insect,
and methods for validating dsRNA trigger efficacy or for causing
stunting or mortality in an insect. More specifically this example
illustrates use of dsRNA triggers for sequence-specific reduction
of target gene mRNA transcript level in insect cells.
[0118] Cultured Spodoptera frugiperda (fall armyworm, FAW) SF9
cells were incubated with the dsRNA triggers T34640 (SEQ ID NO:17,
targetting V-ATPase A subunit), T34642 (SEQ Ill NO:18, targetting
COPI coatomer B (beta) subunit), or T34644 (SEQ ID NO:19,
targetting COPI coatomer (beta prime) subunit), or with a control
trigger T35763 (SEQ ID NO:27, a 300 bp dsRNA trigger targetting
green fluorescent protein); see Table 1. The dsRNA triggers were
formulated with the commercial transfection agent Cellfectin.RTM.
II (Life Technologies, Inc., Grand Island, N.Y. 14072). FIG. 1
depicts the results of the transfection experiments, demonstrating
target-gene-specific suppression (reduction of target gene mRNA
levels measured by Quantigene assays) by the dsRNA triggers in the
insect cells. The control dsRNA trigger T35763 had no effect on the
targetted insect gene mRNA levels.
[0119] Similar experiments were carried out with Plutella
xylostella (diamondback moth, DBM) cells. The results demonstrate a
similar target-gene-specific cytotoxic response to the DBM triggers
but not to a non-specific trigger targetting green fluorescent
protein. Cultured Plutella xylostella (diamondback moth) PxE-PO
#5A3 cells were incubated with the dsRNA triggers T42017 (SEQ ID
NO:21, targetting V-ATPase subunit A), T33310 (SEQ ID NO:29,
targetting V-ATPase subunit A), T32938 (SEQ ID NO:28, targetting
COPI coatomer beta subunit), and T32937 (SEQ ID NO:13, targetting
COPI coatomer beta prime subunit), or with a control trigger T35763
(SEQ ID NO:27, a 300 bp dsRNA trigger targetting green fluorescent
protein); see Table 1. The dsRNA triggers were formulated with the
commercial transfection agent Cellfectin.RTM. II (Life
Technologies, Inc., Grand Island, N.Y. 14072). FIG. 2 depicts the
results of the transfection experiments, demonstrating
target-gene-specific suppression (reduction of target gene mRNA
levels measured by Quantigene assays) by the dsRNA triggers in the
insect cells. The control dsRNA trigger T35763 had no effect on the
targetted insect gene mRNA levels. In this particular experiment,
some reduction of mRNA levels was observed in all DBM-specific
trigger treatments compared to cellfectin II or cellfectin
II+T35763 (SEQ ID NO:27) treatments. Visual pathology was apparent
for T32937 (SEQ ID NO:13, targetting COPI coatomer beta prime
subunit) and T32938 (SEQ ID NO:28, targetting COPI coatomer beta
subunit) treatments with some cell death, rounding, and dislodging
occurring in transfected wells at 48 hours post-transfection.
Treatments with T42017 (SEQ ID NO:21) and T33310 (SEQ ID NO:29)
showed knockdown of the target gene, V-ATPase subunit A mRNA, but
no visual pathology was apparent in cells transfected with those
triggers.
Example 3
[0120] This example illustrates non-limiting embodiments of dsRNA
trigger sequences useful for suppressing or silencing a target gene
in an insect cell or causing stunting or mortality in an insect,
and methods for validating dsRNA trigger efficacy or for causing
stunting or mortality in an insect. More specifically this example
illustrates oral delivery of dsRNA triggers for causing stunting or
mortality in insects.
[0121] An assay using Euschistus heros (neotropical brown stink
bug, NBSB) nymphs fed on an artificial diet was used for testing
the efficacy of dsRNA triggers designed specifically to target
Euschistus heros genes. Using this assay, a .about.500 base pair
dsRNA trigger, T33199, which targets the E. heros ubiquitin C gene,
was observed to effect a dose-dependent stunting and mortality
response in E. heros nymphs. A shorter (302 bp) dsRNA trigger,
T44042 (SEQ ID NO:26) was designed, based on the sequence of
T33199, for formulating for oral or topical delivery.
Example 4
[0122] This example illustrates non-limiting embodiments of dsRNA
trigger sequences useful for suppressing or silencing a target gene
in an insect cell or causing stunting or mortality in an insect,
and methods for validating dsRNA trigger efficacy or for causing
stunting or mortality in an insect. More specifically this example
illustrates embodiments of dsRNA triggers for causing stunting or
mortality in insects, and demonstrates systemic RNAi efficacy of
these triggers.
[0123] Table 2 provides dsRNA triggers tested by microinjection
delivery in Lygus hesperus (Western tarnished plant bug) nymphs.
The non-Lygus-specific trigger T35763 (SEQ ID NO:27, a 300 bp dsRNA
trigger targetting green fluorescent Protein) was used as a
control.
TABLE-US-00002 TABLE 2 Amount Trigger injected per SEQ ID insect
NO.* Trigger ID Lygus hesperus Target Gene (micrograms) 14 T34616
ribosomal protein rpL19 1-2 15 T34617 V-ATPase subunit A 1-2 16
T34622 COPI coatomer B' (beta prime) 1-2 subunit 22 T42772
ubiquitin C 1-2
[0124] Table 3 presents mortality results for dsRNA triggers,
T34617 (SEQ ID NO:15, targetting Lygus hesperus V-ATPase subunit
A), and T34622 (SEQ ID NO:16, targetting Lygus hesperus COPI
coatomer beta prime subunit) tested by microinjection delivery in
Lygus hesperus (Western tarnished plant hug) nymphs. Control nymphs
were microinjected with T35763 (targetting green fluorescent
protein) or with deionized water. Increased percent mortality by
day was observed for Lygus-target-gene-specific treatment groups
(T34617 and T34622) compared to negative control treatment groups
over the 5-day observation period.
TABLE-US-00003 TABLE 3 Total Lygus Trigger Lygus hesperus Trigger
SEQ ID hesperus Percent mortality, shown by days after injection
nymphs ID NO.* Target gene 0 1 2 3 4 5 injected T34617 15 V-ATPase
12 25 58 75 88 100 24 subunit A T34622 16 COPI 8 12 67 96 96 100 24
coatomer beta prime subunit 135763 27 GFP 12 12 29 50 58 67 24
dH.sub.2O (none) (none) 0 5 20 45 55 75 20
[0125] Table 4 presents mortality results for dsRNA triggers,
T34616 (SEQ ID NO:14, targetting Lygus hesperus ribosomal protein
rpL19), T34622 (SEQ ID NO:16, targetting Lygus hesperus COPI
coatomer beta prime subunit), and T42772 (SEQ ID NO:22, targetting
Lygus hesperus ubiquitin C), tested by microinjection delivery in
Lygus hesperus (Western tarnished plant bug) nymphs. Control nymphs
were microinjected with T35763 (targetting green fluorescent
protein). Increased percent mortality by day was observed for
Lygus-target-gene-specific treatment groups (T34616, T34622, and
T42772) compared to the negative control (T35763) treatment group
over the 6-day observation period. Repeat activity of T34622
confirmed activity of this trigger observed in the earlier trial
(Table 3).
TABLE-US-00004 TABLE 4 Total Lygus Trigger Lygus hesperus Trigger
SEQ ID hesperus Percent mortality, shown by days after injection
nymphs ID NO: Target gene 0 1 2 3 4 5 6 injected T34616 14
ribosomal 18 77 77 91 100 100 100 22 protein rpL19 T34622 16 COPT
12 50 83 88 100 100 100 24 coatomer beta prime subunit T42772 22
ubiquitin C 17 61 100 100 100 100 100 23 T35763 27 GFP 8 22 44 48
56 56 61 23
Example 5
[0126] This example discloses embodiments related to polynucleotide
molecules having a nucleotide sequence containing specific
modifications such as nucleotide substitutions. Embodiments of such
modifications include modified dsRNA triggers that provide improved
sequence discrimination between the intended target gene of the
insect pest of interest, and genetic sequences of other, non-target
species.
[0127] Table 5 identifies examples of matches between the sequence
of a target gene provided in Table 1 and a sequence identified in a
non-target organism (NTO), where the match is a segment of at least
19 contiguous nucleotides. Table 5 further provides examples of
sequence modifications (e. g., nucleotide changes at a specified
location in the original target gene sequence) to eliminate the
sequence match to a non-target organism.
TABLE-US-00005 TABLE 5 Nucleotide Length (in position nucleotides)
where of Nucleotide change is Nucleotide Target contiguous position
of made to change made Gene segment beginning eliminate to
eliminate SEQ Non-Target matching of match to match to ID Target
Organism the NTO matching NTO NTO NO: Species (NTO) species
sequence segment sequence sequence 1 Spodoptera Danaus plexippus 19
398 408 G-A frugiperda Danaus plerippus 23 562 575 C-T Danaus
plexippus 26 604 617 A-T Danaus plexippus 20 631 642 C-T Danaus
plexippus 20 661 671 A-T Danaus plexippus 28 695 710 T-A Danaus
plexippus 90 727 737 T-A Danaus plexippus 20 793 802 A-G Danaus
plexippus 20 847 858 C-T Apis mellifera 19 891 900 T-A Homo sapiens
21 905 900 T-A Danaus plexippus 19 968 977 T-C Danaus plexippus 23
1024 1035 G-A Danaus plexippus 48 1078 1092 C-T 1110 G-A 2
Spodoptera Danaus plexippus 90 241 250 T-C frugiperda Danaus
plexippus 26 274 289 G-A Homo sapiens 19 516 526 A-G Danaus
plexippus 26 1615 1628 A-G Danaus plexippus 20 1771 1780 C-T Danaus
plexippus 90 1810 1820 T-C Apis mellifera 19 1870 1879 G-A Homo
sapiens 20 1933 1945 G-A Apis mellifera 19 1934 1946 C-T Homo
sapiens 71 1935 1946 C-T Apis mellifera 20 1936 1946 C-T Homo
sapiens 20 1936 1946 C-T Homo sapiens 19 1936 1946 C-T Homo sapiens
19 1937 1946 C-T Homo sapiens 19 1939 1946 C-T Homo sapiens 19 1942
1946 C-T Apis mellifera 19 2681 2690 T-C 3 Spodoptera Danaus
plexippus 19 62 72 C-T frugiperda Homo sapiens 19 503 512 C-G Homo
sapiens 19 544 553 A-G Bombus impatiens 22 659 669 G-A Bombus
terrestris 22 659 669 G-A Danaus plexippus 26 859 873 C-T Danaus
plexippus 19 925 934 G-A Homo sapiens 19 927 934 G-A Homo sapiens
19 934 945 G-A Danaus plexippus 19 935 945 G-A Danaus plexippus 90
936 945 G-A Danaus plexippus 26 952 964 G-A Homo sapiens 19 974 983
T-A Homo sapiens 19 1461 1470 G-T Homo sapiens 19 1712 1799 G-A
Homo sapiens 90 1713 1799 G-A Homo sapiens 20 2223 2232 G-A Homo
sapiens 19 2242 2256 G-A Danaus plexippus 20 2245 2256 G-A Danaus
plexippus 94 2307 2319 G-C Danaus plexippus 20 2332 2340 C-T
Dartaus plexippus 29 2503 2517 C-T Danaus plexippus 41 2626 2633
T-C 4 Lygus Danaus plexippus 90 323 333 G-A hesperus Bombus
impatiens 20 1010 1020 T-A Bombus terrestris 20 1010 1020 T-A
Danaus plexippus 20 1400 1410 G-A Homo sapiens 19 1603 1612 C-T
Bombus impatiens 96 1607 1699 C-T Bombus terrestris 26 1607 1627
C-T Homo sapiens 19 1968 1977 C-T Apis mellifera 19 2001 2010 C-G
Apis mellifera 20 2041 2050 A-T 5 Lygus Homo sapiens 22 9 19 T-C
hesperus Homo sapiens 20 11 20 T-A Homo sapiens 20 211 220 A-T 6
Lygus Boinbus terrestris 19 37 47 A-G hesperus Danaus plexippus 20
367 383 G-A Homo sapiens 19 374 383 G-A Manaus plexippus 20 637 647
A-T Danaus plexippus 26 802 815 A-T Apis mellifera 21 927 938 A-T
Danaus plexippus 19 1529 1538 A-T Homo sapiens 19 2492 2501 T-C
Homo sapiens 19 2493 2501 T-C 10 Plutella Danaus plexippus 20 1390
1399 T-A xylostella Danaus plexippus 19 1427 1437 C-T Danaus
plexippus 23 1471 1482 G-A Manaus plexippus 20 1543 1553 T-C Homo
sapiens 20 1645 1654 G-A Danaus plexippus 35 1654 1671 G-A Danaus
plexippus 23 1726 1736 C-T Danaus plexippus 35 1942 1959 G-A Danaus
plexippus 20 2005 2016 C-T Danaus plexippus 20 2038 2048 C-T Danaus
plexippus 20 2181 2190 G-A 11 Plutella Homo sapiens 19 235 244 C-T
xylostella Manaus plexippus 22 404 414 A-G Homo sapiens 19 517 526
T-A Danaus plexippus 19 690 699 T-C Danaus plexippus 20 1771 1780
C-T Danaus plexippus 20 1891 1899 C-T Homo sapiens 20 1900 1910 A-T
Danaus plexippus 23 1942 1953 C-T 12 Plutella Danaus plexippus 21
184 194 T-C xylostella Danaus plexippus 19 384 393 G-A Danaus
plexippus 20 613 622 C-T Danaus plexippus 32 916 931 A-T Homo
sapiens 19 916 931 A-T Homo sapiens 71 935 931 A-T Homo sapiens 19
1066 1078 C-T Danaus plexippus 19 1067 1078 C-T Danaus plexippus 20
1068 1078 C-T Homo sapiens 19 1207 1219 T-C Danaus plexippus 19
1208 1219 T-C Danaus plexippus 20 1209 1219 T-C Danaus plexippus 19
1355 1365 G-A Homo sapiens 19 1474 1483 C-T Homo sapiens 70 1884
1894 G-A 1895 C-T Homo sapiens 19 2142 2151 C-T Bombus terrestris
19 2203 2213 G-A Homo sapiens 19 2391 2401 G-A Homo sapiens 19 2808
2817 A-G Danaus plexippus 21 3172 3182 C-T Danaus plexippus 20 3236
3245 C-T Homo sapiens 19 3249 3258 A-G Danaus plexippus 91 3270
3280 G-A Homo sapiens 19 3402 3411 C-T Danaus plexippus 27 3550
3564 C-T
[0128] Table 6 identifies examples of matches between the sequence
of a dsRNA trigger provided in Table 1 and a sequence identified in
a non-target organism (NTO), where the match is a segment of at
least 19 contiguous nucleotides. Table 6 provides examples of
sequence modifications (e.g., nucleotide changes at a specified
location in the original dsRNA trigger sequence) which eliminate a
specific sequence match of at least 19 contiguous nucleotides to a
non-target organism. Table 6 further provides non-limiting
embodiments of a modified trigger sequence in which all of the
nucleotide changes recited in Table 6 for a given original trigger
sequence have been made to eliminate the all of the recited
match(es) of at least 19 contiguous nucleotides to a non-target
organism sequence. For example, the modified dsRNA trigger having
SEQ ID NO:31 has one nucleotide change (A.fwdarw.U) at position
213, when compared to the original dsRNA trigger having SEQ ID
NO:15; this single change eliminates matches of at least 19
contiguous nucleotides to two non-target organisms, Bombus
impatiens and Bombus terrestris. In another example, the modified
dsRNA trigger having SEQ ID NO:35 has four nucleotide changes (at
positions 42, 79, 124, and 194) , when compared to the original
dsRNA trigger having SEQ ID NO:20; these changes eliminate four
matches of at least 19 contiguous nucleotides to the NTO Danaus
plexippus. In another example, the modified dsRNA trigger having
SEQ ID NO:37 has four nucleotide changes (at positions 64, 72, 131,
and 280) , when compared to the original dsRNA trigger having SEQ
ID NO:20; these changes eliminate four matches of at least 19
contiguous nucleotides to the NTOs Bombus impatiens, Bombus
terrestris, Homo sapiens, and Danaus plexippus.
TABLE-US-00006 TABLE 6 Nucleotide position Length (in where
Nucleotide contiguous change is change nucleotides) Nucleotide made
to made to Modified Original of segment position of eliminate
eliminate trigger Trigger Non-Target matching the beginning match
to match to sequence SEQ ID Organism (NTO) NTO of matching NTO NTO
SEQ ID NO: species sequence segment sequence sequence NO: 13 Homo
sapiens 19 229 238 C-U 30 15 Bombus impatiens 20 202 213 A-U 31
Bombus terrestris 20 202 213 A-U 16 Bombus terrestris 19 22 32 A-G
32 17 Danarrs plexippus 19 131 140 A-U 33 18 Homo sapiens 19 162
171 G-A 34 20 Danaus plexippus 20 33 42 U-A 35 Danaus plexippus 19
70 79 A-U Danaus plerippus 23 114 124 G-A Danaus plexippus 20 186
196 U-A 22 Honio sapiens 23 12 24 U-C 36 Homo sapiens 26 12 24 U-C
Homo sapiens 20 15 26 G-A Homo sapiens 23 15 26 G-A Danaus
plexippus 20 27 36 G-A Homo sapiens 23 54 71 C-U Homo sapiens 19 64
71 C-U Homo sapiens 23 126 138 G-A Homo sapiens 20 126 138 G-A Apis
mellifera 20 210 220 A-G Bombus terrestris 20 210 990 A-G Danaus
plexippus 20 216 220 A-G Apis mellifera 20 225 220 A-G Apis
mellifera 29 228 220 A-G Apis mellifera 23 234 243 C-U 23 Bombus
impatiens 29 53 64 A-G 37 Bombus terrestris 20 62 72 U-A Homo
sapiens 19 199 131 G-A Danaus plexippus 20 271 280 A-G 24 Bombus
impatiens 27 98 99 G-C 38 Danaus plexippus 19 102 112 U-A Bombus
impatiens 20 164 176 A-U Apis mellifera 20 167 176 A-U Apis
mellifera 29 167 176 A-U Danaus plexippus 20 167 176 A-U Apis
mellifera 19 186 192 T-C Bombus impatiens 26 188 196 A-G Apis
mellifera 26 200 204 A-U Apis mellifera 20 203 213 U-C Bombus
impatiens 20 203 213 U-C Bombus ierresiris 20 203 213 U-C Danaus
plexippus 26 209 224 G-U Apis mellifera 24 227 224 G-U Apis
mellifera 97 718 994 G-U Bombus impatiens 19 228 224 G-U Homo
sapiens 20 231 242 G-A Apis mellifera 23 251 264 G-A Bombus
impatiens 20 281 291 A-U Bombus impatiens 23 47 63 A-U Bombus
impatiens 20 47 63 A-U Bombus terrestris 20 50 63 A-U Danaus
plexippus 20 53 63 A-U Bombus impatiens 39 86 99 G-C Bombus
impatiens 29 86 99 G-C Bombus terrestris 39 86 99 G-C Bombus
impatiens 30 95 99 G-C Apis mellifera 19 96 99 G-C Apis mellifera
22 96 99 G-C 25 Apis mellifera 23 53 66 C-U 39 Apis mellifera 26 68
66 C-U Bombus impatiens 26 68 66 C-U Apis mellifera 26 71 84 A-U
Apis mellifera 23 71 84 A-U Bombus impatiens 20 80 84 A-U Apis
mellifera 20 89 99 A-U Bombus impatiens 23 155 168 A-U Bombus
impatiens 20 155 168 A-U Bombus terrestris 20 158 168 A-U Danaus
plexippus 20 161 168 A-U Bombus impatiens 39 194 206 G-A Bombus
impatiens 29 194 206 G-A Bombus terrestris 39 194 206 G-A Bombus
impatiens 30 203 206 G-A Apis mellifera 19 204 206 G-A Apis
mellifera 79 204 206 G-A Bombus impatiens 27 206 221 U-G Danaus
plexippus 19 210 221 U-G Bombus impatiens 20 272 285 A-U Apis
mellifera 20 275 285 A-U 26 Apis mellifera 28 275 285 A-U 40 Danaus
plexippus 20 275 285 A-U Homo sapiens 19 62 77 G-A Datzaus
plexippus 20 68 77 G-A Homo sapiens 20 68 77 G-A Homo sapiens 70 98
113 A-G Bombus terrestris 20 104 113 A-G Danaus plexippus 20 155
167 C-U Danaus plexippus 23 155 167 C-U Homo sapiens 23 155 167 C-U
Danaus plexippus 23 197 211 U-C Danams plexippus 19 201 211 U-C
Danaus plexippus 23 221 231 U-C Homo sapiens 30 271 285 A-G Homo
sapiens 71 271 285 A-G 27 Homo sapiens 19 75 84 A-U 41 28 Homo
sapiens 19 222 231 C-A 42 Bombus terrestris 19 283 291 U-C
Example 6
[0129] This example discloses embodiments related to polynucleotide
molecules, such as dsRNA triggers designed to silence or suppress a
target gene of an insect pest of interest, and techniques for
determining efficacy of such molecules in suppressing a target gene
or in controlling an insect pest. This example discloses a method
of providing to an insect a polynucleotide, such as a recombinant
RNA molecule or dsRNA trigger, in the form of an ingestible
composition.
[0130] One method for determining efficacy of polynucleotide
molecules in suppressing a target gene or in controlling a pest
Lygus species is a sucrose feeding assay. In brief, this assay
involves contacting western tarnished plant bug (Lygus hesperus)
nymphs with dsRNA triggers in an ingestible composition (a sucrose
solution), followed by maintenance on an artificial diet and
monitoring of the nymphs' condition.
[0131] Parafilm sachets containing 2 milliliters of a 15% sucrose
solution were prepared for the feeding experiments, with the
treatment sachets containing dsRNA triggers (see Table 1) at either
500 micrograms/milliliter (or parts per million, ppm) or 1000
micrograms/milliliter (or parts per million, ppm). In some
experiments the sucrose solution further included 5
milligrams/milliliter yeast tRNA to inhibit potential nuclease
activity. Artificial diet sachets were also prepared using parafilm
sachets containing 2 milliliters of a western tarnished plant bug
(Lygus hesperus) artificial diet prepared by combining autoclaved,
boiling water (518 milliliters) with 156.3 grams of Bio-Serv.RTM.
diet F9644B (Bio-Serv, Frenchtown, N.J.) in a surface-sterilized
blender.
[0132] Third-instar Lygus hesperus nymphs were anesthetized under
carbon dioxide vapor and distributed among 4-ounce glass jars
(40-75 individuals per treatment). A piece of tissue paper was
added to each jar to absorb honeydew. Each experiment was carried
out over 7 days. The nymphs were allowed to feed for a 72-hour
period (3 days) on the sucrose sachets, after which the sucrose
sachets were removed and replaced with artificial diet sachets for
the remaining 4 days of the 7-day observation period. All insects
for a single treatment group were observed in a single arena,
incubated at 27 degrees Celsius, 60% relative humidity. Initial
mortality at day 0 (start of the 72-hour sucrose-feeding stage) was
0 in all cases. Mortality was recorded from 3 days (i. e., the end
of the 72-hour sucrose-feeding stage) up to 7 days from the start
of the experiment. For gene expression studies, immediately
following the end of the 72-hour sucrose-feeding stage, 12 living
nymphs were removed from each jar and immediately frozen on dry ice
in individual matrix tubes to serve as samples for RNA measurement
assays.
[0133] A series of feeding experiments using the above protocol was
performed to assess activity of the dsRNA triggers T34616 (SEQ ID
NO:14), T34617 (SEQ ID NO:15), T34619 (SEQ ID NO:45), T34622 (SEQ
ID NO:16), T42772 (SEQ ID NO:22), T42768 (SEQ ID NO:46), and T44045
(SEQ ID NO:26) against Lygus hesperus. The dsRNA triggers T42772
(SEQ ID NO:22) and T44045 (SEQ ID NO:26) were also tested on Lygus
lineolaris. A control trigger T35763 (SEQ ID NO:27, a 300 bp dsRNA
trigger targetting green fluorescent protein) was used in the
assays. At 500 micrograms/milliliter (500 ppm), enhanced mortality
was observed with all Lygus-specific dsRNA triggers compared to
control treatments in the presence (Table 7) or absence of yeast
tRNA supplement (Table 8). T34622 (SEQ ID NO:16) (targetting the
putative COPI coatomer beta prime subunit gene with SEQ ID NO:6)
and T42772 (SEQ ID NO:22) (targetting the putative ubiquitin C gene
with SEQ ID NO:7) were consistently the best performing triggers.
Triggers T42772 (SEQ ID NO:22) and T44045 (SEQ ID NO:26), both
targetting a putative ubiquitin C gene (SEQ ID NO:7), exhibited
similar activity in the Western tarnished plant bug Lygus hesperus
(Table 9A); both triggers also appeared active (although slower to
act) in a related pest species, the tarnished plant bug, Lygus
lineolaris (Table 9B).
[0134] A three-replicate experiment tested the ubiquitin C triggers
T44045 (SEQ ID NO:26) and T42768 (SEQ ID NO:46) on Lygus hesperus
at 1000 micrograms/milliliter (1000 ppm); the results demonstrated
statistically significant differences in the means for insect
mortality at days 3, 4, 5, 6, and 7 due to ubiquitin C trigger
treatments when compared to control treatments with 15% sucrose
alone or 15% sucrose plus the control trigger T35763 (SEQ ID NO:27)
at 1000 micrograms/milliliter (1000 ppm) (Table 10).
TABLE-US-00007 TABLE 7 Insect mortality (as percent of total
insects in treatment), dsRNA triggers tested at 500 ppm in presence
of 5 mg/mL yeast tRNA Trigger Total SEQ ID insects in Days since
start of assay Treatment NO: treatment 0 3 4 5 6 7 15% sucrose --
58 0 10 33 55 64 72 15% sucrose + 5 mg/mL tRNA -- 57 0 16 37 54 63
70 T35763 GFP (control) 27 45 0 16 31 38 60 69 T34616 rpL19 14 58 0
31 50 72 86 97 T34617 V-ATPase subunit A 15 62 0 34 52 73 87 92
T34619 COPI coatomer beta subunit 45 56 0 36 43 68 71 89 T34622
COPI coatomer beta prime subunit 16 69 0 43 58 78 90 93 T42772
ubiquitin C 22 75 0 61 81 93 97 99
TABLE-US-00008 TABLE 8 Insect mortality (as percent of total
insects in treatment), dsRNA triggers tested at 500 ppm (without
yeast tRNA) Trigger Total SEQ ID insects in Days since start of
assay Treatment NO: treatment 0 3 4 5 6 7 15% sucrose -- 65 0 26 42
63 71 78 T35763 GOP (control) 27 38 0 29 55 68 76 76 T34616 rpL19
14 62 0 24 47 71 87 94 T34617 V-ATPase subunit A 15 71 0 35 68 83
89 92 T34619 COPI coatomer beta subunit 45 56 0 38 86 91 95 95
T34622 COPI coatomer beta prime subunit 16 64 0 62 95 100 100 100
T42772 ubiquitin C 22 30 0 63 80 90 93 100
TABLE-US-00009 TABLE 9A Lygus hesperus mortality (as percent of
total insects in treatment), dsRNA triggers tested at 500 ppm in
presence of 5 mg/mL yeast tRNA Trigger Total SEQ ID insects in Days
since start of assay Treatment NO: treatment 0 3 4 5 6 7 15%
sucrose -- 28 0 36 50 57 64 64 15% sucrose + 5 mg/mL tRNA -- 43 0
44 56 70 77 79 T35763 GFP (control) 27 32 0 50 66 78 88 91 T34622
COPI coatomer beta prime subunit 16 54 0 52 72 82 94 98 T42772
ubiquitin C 22 58 0 69 95 97 100 100 T14045 ubiquitin C 26 80 0 66
85 94 99 100
TABLE-US-00010 TABLE 9B Lygus lineolaris mortality (as percent of
total insects in treatment), dsRNA triggers tested at 500 ppm in
presence of 5 mg/mL yeast tRNA Trigger Total SEQ ID insects in Days
since start of assay Treatment NO: treatment 0 3 4 5 6 7 15%
sucrose + 5 mg/mL tRNA -- 10 0 20 40 40 40 40 T35763 GFP (control)
27 16 0 19 44 50 56 69 T42772 ubiquitin C 22 20 0 30 45 60 75 95
T44045 ubiquitin C 26 21 0 29 43 67 86 90
TABLE-US-00011 TABLE 10 Lygus hesperus mortality (as percent of
total insects in treatment), dsRNA triggers tested at 1000 ppm
Trigger Total SEQ ID insects in Days since start of assay Treatment
NO: Replicate treatment 0 3 4 5 6 7 15% sucrose -- 1 29 0 45 45 48
48 52 2 30 0 23 33 57 67 70 3 30 0 21 28 34 41 41 15%
sucrose--mortality, mean (sd*) 0 (0) 30 (13) 35 (9) 46 (11) 52 (13)
54 (14) T35763 GFP 27 1 30 0 20 30 53 53 53 (control) 2 30 0 13 17
53 63 67 3 30 0 30 40 50 57 60 T35763--mortality, mean (sd*) 0 (0)
21 (8) 29 (12) 52 (2) 58 (5) 60 (7) T44045 26 1 30 0 37 53 63 77 87
ubiquitin C 2 29 0 24 38 59 76 86 3 30 0 43 47 57 70 73
T44045--mortality, mean (sd*) 0 (0) 35 (10) 46 (8) 60 (3) 74 (4) 82
(8) T42768 46 1 29 0 17 55 90 97 97 ubiquitin C 2 30 0 50 60 80 83
87 3 30 0 40 60 70 77 80 T42769--mortality, mean (sd*) 0(0) 36 (17)
58 (3) 80 (10) 86 (10) 88 (8) *sd = standard deviation of the mean,
given in percentage
[0135] Target gene suppression was assessed in Lygus hesperus by
Quantigene analysis of three target genes (COPI coatomer beta prime
subunit, V-ATPase subunit A, and COPI coatomer beta subunit).
Sucrose feeding assays were carried out using the dsRNA triggers
T34616 (SEQ ID NO:14), T34617 (SEQ ID NO:15), T34619 (SEQ ID
NO:45), T34622 (SEQ ID NO:16), T42772 (SEQ ID NO:22), and T44045
(SEQ ID NO:26) tested at 500 or 100 ppm in 15% sucrose as described
above. Immediately following the end of the 72-hour sucrose-feeding
stage, the nymphs were individually frozen and subjected to
Quantigene analysis. All values were normalized against the
expression levels of two reference genes (EFlalpha and actin). The
results (Tables 11A-C) demonstrated that each of the three tested
target genes was specifically suppressed by the corresponding dsRNA
trigger, coincident with observed increased mortality when compared
to treatment with sucrose only or with the control GEP trigger
T35763 (SEQ ID NO:27). The observed target gene suppression
(reduction in target gene expression) was significant (p=0.05)
compared to sucrose controls for five of six trigger experiments;
in the sixth trigger experiment (T34622 at 1000 ppm, see Table 11A)
visual suppression was observed just below the significance level.
These results support the conclusion that the mortality observed in
15% sucrose feeding assays is mediated by RNAi.
TABLE-US-00012 TABLE 11A Target gene: L. hesperus COPI coatomer
beta prime subunit (F38E11), SEQ ID NO: 6 % Significant change @ p
= 0.05 Trigger from from concentration Treatment Target gene
control control? n/a sucrose only n/a n/a n/a 1000 ppm T34617 (SEQ
ID NO: 15) V-ATPase subunit A -4% no 1000 ppm T34619 (SEQ ID NO:
45) COPI coatomer beta subunit 33% no 1000 ppm T34622 (SEQ ID NO:
16) COPI coatomer beta prime -34% no subunit 1000 ppm T35763 (SEQ
ID NO: 27) GFP 4% no 1000 ppm T44045 (SEQ ID NO: 26) ubiquitin C
19% no n/a sucrose only n/a n/a n/a 500 ppm T34617 (SEQ ID NO: 15)
V-ATPase subunit A -15% no 500 ppm T34619 (SEQ ID NO: 45) COPI
coatomer beta subunit -31% no 500 ppm T34622 (SEQ ID NO: 16) COPI
coatomer beta prime -71% yes subunit 500 ppm T35763 (SEQ ID NO: 27)
GFP -24% no n/a untreated (artificial diet fed) n/a 3% no
TABLE-US-00013 TABLE 11B Target gene: L. hesperus V-ATPase A
subunit (CG3762), SEQ ID NO: 4 % Significant change @ p = 0.05
Trigger from from concentration Treatment Target gene control
control? n/a sucrose only n/a n/a n/a 1000 ppm T34617 (SEQ ID NO:
15) V-ATPase subunit A -77% yes 1000 ppm T34619 (SEQ ID NO: 45)
COPI coatomer beta subunit -21% no 1000 ppm T34622 (SEQ ID NO: 16)
COPI coatomet beta prime -23% no subunit 1000 ppm T35763 (SEQ ID
NO: 27) GFP -23% no 1000 ppm T44045 (SEQ ID NO: 26) ubiquitin C
-25% no n/a sucrose only n/a n/a n/a 500 ppm T34617 (SEQ ID NO: 15)
V-ATPase subunit A -63% yes 500 ppm T34619 (SEQ ID NO: 45) COPI
coatomer beta subunit -25% no 500 ppm T34622 (SEQ ID NO: 16) COPI
coatomer beta prime 7% no subunit 500 ppm T35763 (SEQ ID NO: 27)
GFP -35% no n/a untreated (artificial diet fed) n/a 20% no
TABLE-US-00014 TABLE 11C Target gene: L. hesperus COPI coatomer
beta subunit (CG6223), SEQ ID NO: 43 % Significant change @ p =
0.05 Trigger from from concentration Treatment Target gene control
control? n/a sucrose only n/a n/a n/a 1000 ppm T34617 (SEQ ID NO:
15) V-ATPase subunit A 6% no 1000 ppm 134619 (SEQ ID NO: 45) COPI
coatomer beta subunit -49% yes 1000 ppm T34622 (SEQ ID NO: 16) COPI
coatomer beta prime 28% no subunit 1000 ppm T35763 (SEQ ID NO: 27)
GFP 18% no 1000 ppm 144045 (SEQ ID NO: 26) ubiquitin C 21% no n/a
sucrose only n/a n/a n/a 500 ppm T34617 (SEQ ID NO: 15) V-ATPase
subunit A -22% no 500 ppm T34619 (SEQ ID NO: 45) COPI coatomer beta
subunit -54% yes 500 ppm T34622 (SEQ ID NO: 16) COPI coatomer beta
prime -21% no subunit 500 ppm T35763 (SEQ ID NO: 27) GFP -34% no
n/a untreated (artificial diet fed) n/a 18% no n/a = not
applicable
Example 7
[0136] The polynucleotides of this invention are generally designed
to modulate expression by inducing regulation or suppression of an
insect target gene and are designed to have a nucleotide sequence
essentially identical or essentially complementary to the
nucleotide sequence an insect target gene or cDNA (e. g., SEQ ID
NOs:1-12 and 43-44) or to the sequence of RNA transcribed from an
insect target gene, which can be coding sequence or non-coding
sequence. These effective polynucleotide molecules that modulate
expression are referred to herein as a "trigger", or "triggers".
This example describes non-limiting techniques useful in the design
and selection of polynucleotides as "triggers" to modulate
expression of an insect target gene.
Selection of Polynucleotide Triggers by "Tiling"
[0137] Polynucleotides of use in the invention need not be of the
full length of a target gene, and in many embodiments are of much
shorter length in comparison to the target gene. An example of a
technique that is useful for selecting effective triggers is
"tiling", or evaluation of polynucleotides corresponding to
adjacent or partially overlapping segments of a target gene.
[0138] Effective polynucleotide "triggers" can be identified by
"tiling" gene targets in selected length fragments, e. g.,
fragments of 200-300 nucleotides in length, with partially
overlapping regions, e. g., of about 25 nucleotides, along the
length of the target gene. To suppress a single gene, trigger
sequences are designed to correspond to (have a nucleotide identity
or complementarity with) regions that are unique to the target
gene; the selected region of the target gene can include coding
sequence or non-coding sequence (e. g., promoter regions, 3'
untranslated regions, introns and the like) or a combination of
both.
[0139] Where it is of interest to design a target effective in
suppressing multiple target genes, the multiple target gene
sequences are aligned and polynucleotide triggers designed to
correspond to regions with high sequence homology in common among
the multiple targets. Conversely, where it is of interest to design
a target effective in selectively suppressing one among multiple
target sequences, the multiple target gene sequences are aligned
and polynucleotide triggers designed to correspond to regions with
no or low sequence homology in common among the multiple
targets.
[0140] In a non-limiting example, anti-sense single-stranded RNA
triggers are designed for each of the target genes listed in Table
1 as follows. Multiple anti-sense single-stranded RNA triggers,
each of 200-300 nucleotides in length and with a sequence
corresponding to (i. e., for anti-sense triggers, complementary to)
a fragment of a target gene having a sequence selected from SEQ ID
NOs:1-12 and 43-44 are designed so that each trigger's sequence
overlaps about 25 nucleotides of the next adjacent trigger's
sequence, in such a way that the multiple triggers in combination
cover the full length of the target gene. (Sense triggers are
designed in an analogous fashion, where the trigger sequence is
identical to a fragment of the target gene. Similarly,
double-stranded triggers can be designed by providing pairs of
sense and anti-sense triggers, each pair of triggers overlapping
the next adjacent pair of triggers.)
[0141] The polynucleotide triggers are tested by any convenient
means for efficacy in silencing the insect target gene. Examples of
a suitable test include the bioassays described herein in the
working Examples. Another test involves the topical application of
the polynucleotide triggers either directly to individual insects
or to the surface of a plant to be protected from an insect
infestation. One desired result of treatment with a polynucleotide
of this invention is prevention or control of an insect
infestation, e. g., by inducing in an insect a physiological or
behavioural change such as, but not limited to, growth stunting,
increased mortality, decrease in reproductive capacity, decrease in
or cessation of feeding behavior or movement, or decrease in or
cessation of metamorphosis stage development. Another desired
result of treatment with a polynucleotide of this invention is
provision of a plant that exhibits improved resistance to an insect
infestation.
[0142] The tiling procedure can be repeated, if desired. A
polynucleotide trigger found to provide desired activity can itself
be subjected to a tiling procedure. For example, multiple
overlapping anti-sense single-stranded RNA triggers are designed,
each of 50-60 nucleotides in length and with a sequence
corresponding to (i. e., for anti-sense triggers, complementary to)
the fragment of a target gene having a sequence selected from SEQ
ID NOs:1-12 and 43-44 for which a single polynucleotide trigger of
300 nucleotides was found to be effective. Additional rounds of
tiling analysis can be carried out, where triggers as short as 18
or 19 nucleotides are tested.
[0143] Effective polynucleotide triggers of any size can be used,
alone or in combination, in the various methods of this invention.
In some embodiments, a single polynucleotide trigger is used to
make a composition of this invention (e. g., a composition for
topical application, or a recombinant DNA construct useful for
making a transgenic plant). In other embodiments, a mixture or pool
of different polynucleotide triggers is used; in such cases the
polynucleotide triggers can be for a single target gene or for
multiple target genes. In some embodiments, a polynucleotide
trigger is designed to target different regions of the target gene,
e. g., a trigger can include multiple segments that correspond to
different exon regions of the target gene, and "spacer" nucleotides
which do not correspond to a target gene can optionally be used in
between or adjacent to the segments.
Thermodynamic Considerations in Selecting Polynucleotide
Triggers
[0144] Polynucleotide triggers can be designed or their sequence
optimised using thermodynamic considerations. For example,
polynucleotide triggers can be selected based on the thermodynamics
controlling hybridization between one nucleic acid strand (e. g., a
polynucleotide trigger or an individual siRNA) and another (e. g.,
a target gene transcript)
[0145] Methods and algorithms to predict nucleotide sequences that
are likely to he effective at RNAi-mediated silencing of a target
gene are known in the art. Non-limiting examples of such methods
and algorithms include "i-score", described by Ichihara et al.
(2007) Nucleic Acids Res., 35(18): 123e; "Oligowalk", publicly
available at rna.urmc.rochester.edu/servers/oligowalk and described
by Lu et al. (2008) Nucleic Acids Res., 36:W104-108; and "Reynolds
score", described by Khovorova et al. (2004) Nature Biotechnol.,
22:326-330.
Permitted Mismatches
[0146] By "essentially identical" or "essentially complementary" is
meant that the trigger polynucleotide (or at least one strand of a
double-stranded polynucleotide) has sufficient identity or
complementarity to the target gene or to the RNA transcribed from a
target gene (e. g., the transcript) to suppress expression of a
target gene (e. g., to effect a reduction in levels or activity of
the target gene transcript and/or encoded protein). Polynucleotides
of this invention need not have 100 percent identity or
complementarity to a target gene or to the RNA transcribed from a
target gene to suppress expression of the target gene (e. g., to
effect a reduction in levels or activity of the target gene
transcript or encoded protein, or to provide control of an insect
species). In some embodiments, the polynucleotide or a portion
thereof is designed to be essentially identical to, or essentially
complementary to, a sequence of at least 18 or 19 contiguous
nucleotides in either the target gene or the RNA transcribed from
the target gene. In certain embodiments, an "essentially identical"
polynucleotide has 100 percent sequence identity or at least about
83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, or
99 percent sequence identity when compared to the sequence of 18 or
more contiguous nucleotides in either the endogenous target gene or
to an RNA transcribed from the target gene. In certain embodiments,
an "essentially complementary" polynucleotide has 100 percent
sequence complementarity or at least about 83, 84, 85, 86, 87, 88,
89, 90, 91, 92, 93, 94, 95, 96, 97, 98, or 99 percent sequence
complementarity when compared to the sequence of 18 or more
contiguous nucleotides in either the target gene or RNA transcribed
from the target gene.
[0147] Polynucleotides containing mismatches to the target gene or
transcript can be used in certain embodiments of the compositions
and methods of this invention. In some embodiments, the
polynucleotide includes at least 18 or at least 19 contiguous
nucleotides that are essentially identical or essentially
complementary to a segment of equivalent length in the target gene
or target gene's transcript. In certain embodiments, a
polynucleotide of 19 contiguous nucleotides that is essentially
identical or essentially complementary to a segment of equivalent
length in the target gene or target gene's transcript can have 1 or
2 mismatches to the target gene or transcript (i. e., 1 or 2
mismatches between the polynucleotide's 19 contiguous nucleotides
and the segment of equivalent length in the target gene or target
gene's transcript). In certain embodiments, a polynucleotide of 20
or more nucleotides that contains a contiguous 19 nucleotide span
of identity or complementarity to a segment of equivalent length in
the target gene or target gene's transcript can have 1 or 2
mismatches to the target gene or transcript. In certain
embodiments, a polynucleotide of 21 continuous nucleotides that is
essentially identical or essentially complementary to a segment of
equivalent length in the target gene or target gene's transcript
can have 1, 2, or 3 mismatches to the target gene or transcript. In
certain embodiments, a polynucleotide of 22 or more nucleotides
that contains a contiguous 21 nucleotide span of identity or
complementarity to a segment of equivalent length in the target
gene or target gene's transcript can have 1, 2, or 3 mismatches to
the target gene or transcript.
[0148] In designing polynucleotides with mismatches to an
endogenous target gene or to an RNA transcribed from the target
gene, mismatches of certain types and at certain positions that are
more likely to be tolerated can be used. In certain exemplary
embodiments, mismatches formed between adenine and cytosine or
guanosine and uracil residues are used as described by Du et cd.
(2005) Nucleic Acids Res., 33:1671-1677. In some embodiments,
mismatches in 19 base-pair overlap regions are located at the low
tolerance positions 5, 7, 8 or 11 (from the 5' end of a
19-nucleotide target), at medium tolerance positions 3, 4, and
12-17(from the 5' end of a 19-nucleotide target), and/or at the
high tolerance positions at either end of the region of
complementarity, i. e., positions 1, 2, 18, and 19 (from the 5' end
of a 19-nucleotide target) as described by Du et 01. (2005) Nucleic
Acids Res., 33:1671-1677. Tolerated mismatches can be empirically
determined in routine assays such as those described herein in the
working Examples.
[0149] In some embodiments, the polynucleotides include additional
nucleotides for reasons of stability or for convenience in cloning
or synthesis. In one embodiment, the polynucleotide is a dsRNA
including an RNA strand with a segment of at least 21 contiguous
nucleotides of a sequence selected from the group consisting of SEQ
ID NOs:13-26, 28-29, 30-42, 45, and 46 and further including an
additional 5' G or an additional 3' C or both, adjacent to the
segment. In another embodiment, the polynucleotide is a
double-stranded RNA including additional nucleotides to form an
overhang, for example, a dsRNA including 2 deoxyribonucleotides to
form a 3' overhang.
Embedding Active Triggers in Neutral Sequence
[0150] In an embodiment, a bioactive trigger (i. e., a
polynucleotide with a sequence corresponding to the target gene and
which is responsible for an observed suppression of the target
gene) is embedded in "neutral" sequence, i. e., inserted into
additional nucleotides that have no sequence identity or
complementarity to the target gene. Neutral sequence can be
desirable, e. g., to increase the overall length of a
polynucleotide. For example, it can be desirable for a
polynucleotide to be of a particular size for reasons of stability,
cost-effectiveness in manufacturing, or biological activity.
[0151] It has been reported that in another coleopteran species,
Diabrotica virgifera, dsRNAs greater than or equal to approximately
60 base-pairs (bp) are required for biological activity in
artificial diet bioassays; see Bolognesi et al. (2012) PLoS ONE
7(10): e47534. doi:10.1371/journal.pone.0047534. Thus, in one
embodiment, a 21-base-pair dsRNA trigger corresponding to a target
gene in Table 1 and found to provide control of an insect
infestation is embedded in neutral sequence of an additional 39
base pairs, thus forming a polynucleotide of about 60 base pairs.
In another embodiment, a single 21-base-pair trigger is found to be
efficacious when embedded in larger sections of neutral sequence,
e.g., where the total polynucleotide length is from about 60 to
about 300 base pairs. In another embodiment, at least one segment
of at least 21 contiguous nucleotides of a sequence selected from
the group consisting of SEQ ID NOs:13-26, 28-29, 30-42, 45, and 46
is embedded in larger sections of neutral sequence to provide an
efficacious trigger. In another embodiment, segments from multiple
sequences selected from the group consisting of SEQ ID NOs:13-26,
28-29, 30-42, 45, and 46 are embedded in larger sections of neutral
sequence to provide an efficacious trigger.
[0152] It is anticipated that the combination of certain
recombinant RNAs of this invention (e.g., the dsRNA triggers having
a sequence selected from the group consisting of SEQ ID NOs:13-26,
28-29, 30-42, 45, and 46, or active fragments of these triggers)
with one or more non-polynucleotide pesticidal agents will result
in a synergetic improvement in prevention or control of insect
infestations, when compared to the effect obtained with the
recombinant RNA alone or the non-polynucleotide pesticidal agent
alone. Routine insect bioassays such as the bioassays described
herein in the working Examples are useful for defining
dose-responses for larval mortality or growth inhibition using
combinations of the polynucleotides of this invention and one or
more non-polynucleotide pesticidal agents (e. g., a patatin, a
plant lectin, a phytoecdysteroid, a Bacillus thuringiensis
insecticidal protein, a Xenorhabdus insecticidal protein, a
Photorhabdus insecticidal protein, a Bacillus laterosporous
insecticidal protein, and a Bacillus sphaericus insecticidal
protein). One of skill in the art can test combinations of
polynucleotides and non-polynucleotide pesticidal agents in routine
bioassays to identify combinations of bioactives that are
synergistic and desirable for use in protecting plants from insect
infestations.
Example 8
[0153] This example illustrates non-limiting embodiments of the use
of polynucleotides of this invention in topically applied
compositions for preventing or controlling insect infestations.
[0154] Compositions containing one or more polynucicotides of this
invention arc useful as topical treatments of plants, animals, or
environments wherein prevention or control of a Leptinotarsa
species infestation is desired. In embodiments, a polynucleotide
trigger for a target gene with a sequence selected from SEQ ID
NOs:1-12 and 43-44, i. e., the target genes identified in Table 1,
as described in the preceding examples, is included in an effective
amount in a composition designed to be provided directly (e. g., by
contact or ingestion) to an insect species, or a plant or
environment wherein prevention or control of infestation by that
insect is desired. In embodiments, a polynucleotide trigger for a
target gene with a sequence selected from SEQ ID NOs:13-26, 28-29,
30-42, 45, and 46 is included in an effective amount in such
compositions. In embodiments, a dsRNA trigger with a strand having
a sequence selected from the group consisting of SEQ ID NOs:13-26,
28-29, 30-42, 45, and 46, or active fragments of these triggers, is
included in an effective amount in such compositions. Such
compositions are formulated and manufactured according to the art
and can be in any convenient form, e.g., a solution or mixture of
solutions, an emulsion, a suspension, a dispersible powder, a solid
or liquid bait, a seed coating, or a soil drench. Embodiments of
such compositions include those where the polynucleotide of this
invention is provided in a living or dead microorganism such as a
bacterium or fungal or yeast cell, or provided as a microbial
fermentation product, or provided in a living or dead plant cell,
or provided as a synthetic recombinant polynucleotide. In an
embodiment the composition includes a non-pathogenic strain of a
microorganism that contains a polynucleotide of this invention;
ingestion or intake of the microorganism results in stunting or
mortality of the insect pest; non-limiting examples of suitable
microorganisms include E. coil, B. thuringiensis, Pseudomonas sp.,
Photorhabdus sp., Xenorhabdus sp., Serratia entomophila and related
Serratia sp., B. sphaericus, B. cereus, B. laterosporus, B.
popilliae, Clostridium Nfermentans and other Clostridium species,
or other spore-forming gram-positive bacteria. In an embodiment,
the composition includes a plant virus vector including a
polynucleotide of this invention; feeding by an insect on a plant
treated with the plant virus vector results in stunting or
mortality of the insect. In an embodiment, the composition includes
a baculovirus vector including a polynucleotide of this invention;
ingestion or intake of the vector results in stunting or mortality
of the insect. In an embodiment, a polynucleotide of this invention
is encapsulated in a synthetic matrix such as a polymer or attached
to particulates and topically applied to the surface of a plant;
feeding by an insect on the topically treated plant results in
stunting or mortality of the insect. In an embodiment, a
polynucleotide of this invention is provided in the form of a plant
cell (e. g., a transgenic plant cell of this invention) expressing
the polynucleotide; ingestion of the plant cell or contents of the
plant cell by an insect results in stunting or mortality of the
insect.
[0155] Embodiments of the compositions optionally include the
appropriate stickers and wetters required for efficient foliar
coverage as well as UV protectants to protect polynucleotides such
as dsRNAs from UV damage. Such additives are commonly used in the
bioinsecticide industry and are known to those skilled in the art.
Compositions for soil application can include granular formulations
that serve as bait for insect larvae. Embodiments include a carrier
agent, a surfactant, an organosilicone, a polynucleotide herbicidal
molecule, a non-polynucleotide herbicidal molecule, a
non-polynucleotide pesticide, a safener, an insect attractant, and
an insect growth regulator. In embodiments, the composition further
includes at least one pesticidal agent selected from the group
consisting of a patatin, a plant lectin, a phytoecdysteroid, a
Bacillus thuringiensis insecticidal protein, a Xenorhabdus
insecticidal protein, a Photorhabdus insecticidal protein, a
Bacillus laterosporous insecticidal protein, and a Bacillus
sphaericus insecticidal protein.
[0156] Such compositions are applied in any convenient manner, e.
g., by spraying or dusting the insect directly, or spraying or
dusting a plant or environment wherein prevention or control of
infestation by that insect is desired, or by applying a coating to
a surface of a plant, or by applying a coating to a seed (or seed
potato) in preparation for the seed's planting, or by applying a
soil drench around roots of a plant for which prevention or control
of infestation by that insect is desired.
[0157] An effective amount of a polynucleotide of this invention is
an amount sufficient to provide control of the insect, or to
prevent infestation by the insect; determination of effective
amounts of a polynucleotide of this invention are made using
routine assays such as those described in the working Examples
herein. While there is no upper limit on the concentrations and
dosages of a polynucleotide of this invention that can be useful in
the methods and compositions provided herein, lower effective
concentrations and dosages will generally be sought for efficiency
and economy. Non-limiting embodiments of effective amounts of a
polynucleotide include a range from about 10 nanograms per
milliliter to about 100 micrograms per milliliter of a
polynucleotide in a liquid form sprayed on a plant, or from about
10 milligrams per acre to about 100 grams per acre of
polynucleotide applied to a field of plants, or from about 0.001 to
about 0.1 microgram per milliliter of polynucleotide in an
artificial diet for feeding the insect. Where compositions of this
invention are topically applied to a plant, the concentrations can
be adjusted in consideration of the volume of spray or treatment
applied to plant leaves or other plant part surfaces, such as
flower petals, stems, tubers, fruit, anthers, pollen, leaves,
roots, or seeds. In one embodiment, a useful treatment for
herbaceous plants using 25-mer polynucleotides of this invention is
about 1 nanomole (nmol) of polynucleotides per plant, for example,
from about 0.05 to 1 nmol polynucleotides per plant. Other
embodiments for herbaceous plants include useful ranges of about
0.05 to about 100 nmol, or about 0.1 to about 20 nmol, or about 1
nmol to about 10 nmol of polynucleotides per plant. In certain
embodiments, about 40 to about 50 nmol of a ssDNA polynucleotide of
this invention are applied. In certain embodiments, about 0.5 nmol
to about 2 nmol of a dsRNA of this invention is applied. In certain
embodiments, a composition containing about 0.5 to about 2.0
milligrams per milliliter, or about 0.14 milligrams per milliliter
of a dsRNA or an ssDNA (21-mer) of this invention is applied. In
certain embodiments, a composition of about 0.5 to about 1.5
milligrams per milliliter of a dsRNA polynucleotide of this
invention of about 50 to about 200 or more nucleotides is applied.
In certain embodiments, about 1 nmol to about 5 nmol of a dsRNA of
this invention is applied to a plant. In certain embodiments, the
polynucleotide composition as topically applied to the plant
contains at least one polynucleotide of this invention at a
concentration of about 0.01 to about 10 milligrams per milliliter,
or about 0.05 to about 2 milligrams per milliliter, or about 0.1 to
about 2 milligrams per milliliter. Very large plants, trees, or
vines can require correspondingly larger amounts of
polynucleotides. When using long dsRNA molecules of this invention
that can be processed into multiple oligonucleotides (e. g.,
multiple triggers encoded by a single recombinant DNA molecule of
this invention), lower concentrations can be used. Non-limiting
examples of effective polynucleotide treatment regimes include a
treatment of between about 0.1 to about 1 nmol of polynucleotide
molecule per plant, or between about 1 nmol to about 10 nmol of
polynucleotide molecule per plant, or between about 10 nmol to
about 100 nmol of polynucleotide molecule per plant.
[0158] Embodiments of compositions of this invention include a
"transfer agent", i. e., an agent that, when combined with a
composition including a polynucleotide of this invention that is
topically applied to the surface of an organism, enables the
polynucleotide to enter the cells of that organism. Such transfer
agents can he incorporated as part of the composition including a
polynucleotide of this invention, or can be applied prior to,
contemporaneously with, or following application of the composition
including a polynucleotide of this invention. In embodiments, a
transfer agent is an agent that improves the uptake of a
polynucleotide of this invention by an insect. In embodiments, a
transfer agent is an agent that conditions the surface of plant
tissue, e. g., seeds, leaves, stems, roots, flowers, or fruits, to
permeation by a polynucleotide of this invention into plant cells.
In embodiments, the transfer agent enables a pathway for a
polynucleotide of this invention through cuticle wax barriers,
stomata, and/or cell wall or membrane barriers into plant
cells.
[0159] Suitable transfer agents include agents that increase
permeability of the exterior of the organism or that increase
permeability of cells of the organism to polynucleotides of this
invention. Suitable transfer agents include a chemical agent, or a
physical agent, or combinations thereof. Chemical agents for
conditioning or transfer include (a) surfactants, (b) an organic
solvent or an aqueous solution or aqueous mixtures of organic
solvents, (c) oxidizing agents, (d) acids, (e) bases, (f) oils, (g)
enzymes, or combinations thereof. In embodiments, application of a
composition of this invention and a transfer agent optionally
includes an incubation step, a neutralization step (e. g., to
neutralize an acid, base, or oxidizing agent, or to inactivate an
enzyme), a rinsing step, or combinations thereof. Suitable transfer
agents can be in the form of an emulsion, a reverse emulsion, a
liposome, or other micellar-like composition, or can cause the
polynucleotide composition to take the form of an emulsion, a
reverse emulsion, a liposome, or other micellar-like composition.
Embodiments of transfer agents include counter-ions or other
molecules that are known to associate with nucleic acid molecules,
e. g., inorganic ammonium ions, alkyl ammonium ions, lithium ions,
polyamines such as spermine, spermidine, or putrescine, and other
cations. Embodiments of transfer agents include organic solvents
such as DMSO, DMF, pyridine, N-pyrrolidine,
hexamethylphosphoramide, acetonitrile, dioxane, polypropylene
glycol, or other solvents miscible with water or that dissolve
phosphonucleotides in non-aqueous systems (such as is used in
synthetic reactions). Embodiments of transfer agents include
naturally derived or synthetic oils with or without surfactants or
emulsifiers, e. g., plant-sourced oils, crop oils (such as those
listed in the 9.sup.th Compendium of Herbicide Adjuvants, publicly
available on-line at herbicide.adjuvants.com), paraffinic oils,
polyol fatty acid esters, or oils with short-chain molecules
modified with amides or polyamines such as polyethyleneimine or
N-pyrrolidine.
[0160] Embodiments of transfer agents include organosilicone
preparations. For example, a suitable transfer agent is an
organosilicone preparation that is commercially available as SILWET
L-77.RTM. brand surfactant having CAS Number 27306-78-1 and EPA
Number: CAL.REG.NO. 5905-50073-AA, and currently available from
Momentive Performance Materials, Albany, N.Y. In embodiments where
a SILWET L-77.RTM. brand surfactant organosilicone preparation is
used as transfer agent in the form of a spray treatment (applied
prior to, contemporaneously with, or following application of the
composition including a polynucleotide of this invention) of plant
leaves or other plant surfaces, freshly made concentrations in the
range of about 0.015 to about 2 percent by weight (wt percent) (e.
g., about 0.01, 0.015, 0.02, 0.025, 0.03, 0.035, 0.04, 0.045, 0.05,
0.055, 0.06, 0.065, 0.07, 0.075, 0.08, 0.085, 0.09, 0.095, 0.1,
0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2, 1.3, 1.4,
1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2, 2.3, 2.5 wt percent) are
efficacious in preparing a leaf or other plant surface for transfer
of a polynucleotide of this invention into plant cells from a
topical application on the surface. One embodiment includes a
composition that comprises a polynucleotide of this invention and a
transfer agent including an organosilicone preparation such as
Silwet L-77 in the range of about 0.015 to about 2 percent by
weight (wt percent) (e. g., about 0.01, 0.015, 0.02, 0.025, 0.03,
0.035, 0.04, 0.045, 0.05, 0.055, 0.06, 0.065, 0.07, 0.075, 0.08,
0.085, 0.09, 0.095. 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9,
1.0, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2,
2.3, 2.5 wt percent). One embodiment includes a composition that
comprises a polynucleotide of this invention and a transfer agent
including SILWET L-77.RTM. brand surfactant in the range of about
0.3 to about 1 percent by weight (wt percent) or about 0.5 to about
1%., by weight (wt percent).
[0161] Organosilicone compounds useful as transfer agents for use
in this invention include, but are not limited to, compounds that
include: (a) a trisiloxane head group that is covalently linked to,
(b) an alkyl linker including, but not limited to, an n-propyl
linker, that is covalently linked to, (c) a polyglycol chain, that
is covalently linked to, (d) a terminal group. Trisiloxane head
groups of such organosilicone compounds include, but are not
limited to, heptamethyltrisiloxane. Alkyl linkers can include, but
are not limited to, an n-propyl linker. Polyglycol chains include,
but are not limited to, polyethylene glycol or polypropylene
glycol. Polyglycol chains can comprise a mixture that provides an
average chain length "n" of about "7.5". In certain embodiments,
the average chain length "n" can vary from about 5 to about 14.
Terminal groups can include, but are not limited to, alkyl groups
such as a methyl group. Organosilicone compounds useful as transfer
agents for use in this invention include, but are not limited to,
trisiloxane ethoxylate surfactants or polyalkylene oxide modified
heptamethyl trisiloxane. An example of a transfer agent for use in
this invention is Compound I:
##STR00001##
[0162] (Compound I: polyalkyleneoxide heptamethyltrisiloxane,
average n=7.5).
[0163] Organosilicone compounds useful as transfer agents for use
in this invention are used, e. g., as freshly made concentrations
in the range of about 0.015 to about 2 percent by weight (wt
percent) (e. g., about 0.01, 0.015, 0.02, 0.025, 0.03, 0.035, 0.04,
0.045, 0.05, 0.055, 0.06, 0.065, 0.07, 0.075, 0.08, 0.085, 0.09,
0.095, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.1, 1.2,
1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2.0, 2.1, 2.2, 2.3, 2.5 wt
percent).
[0164] Embodiments of transfer agents include one or more salts
such as ammonium chloride, tetrabutylphosphonium bromide, and
ammonium sulfate, provided in or used with a composition including
a polynucleotide of this invention. In embodiments, ammonium
chloride, tetrabutylphosphonium bromide, and/or ammonium sulfate
are used at a concentration of about 0.5% to about 5% (w/v), or
about 1% to about 3% (w/v), or about 2% (w/v). In certain
embodiments, the composition including a polynucleotide of this
invention includes an ammonium salt at a concentration greater or
equal to 300 millimolar. In certain embodiments, the composition
including a polynucleotide of this invention includes an
organosilicone transfer agent in a concentration of about 0.015 to
about 2 percent by weight (wt percent) as well as ammonium sulfate
at concentrations from about 80 to about 1200 mM or about 150 mM to
about 600 mM.
[0165] Embodiments of transfer agents include a phosphate salt.
Phosphate salts useful in a composition including a polynucleotide
of this invention include, but are not limited to, calcium,
magnesium, potassium, or sodium phosphate salts. In certain
embodiments, the composition including a polynucleotide of this
invention includes a phosphate salt at a concentration of at least
about 5 millimolar, at least about 10 millimolar, or at least about
20 millimolar. In certain embodiments, the composition including a
polynucleotide of this invention includes a phosphate salt in a
range of about 1 mM to about 25 mM or in a range of about 5 mM to
about 25 mM. In certain embodiments, the composition including a
polynucleotide of this invention includes sodium phosphate at a
concentration of at least about 5 millimolar, at least about 10
millimolar, or at least about 20 millimolar. In certain
embodiments, the composition including a polynucleotide of this
invention includes sodium phosphate at a concentration of about 5
millimolar, about 10 millimolar, or about 20 millimolar. In certain
embodiments, the composition including a polynucleotide of this
invention includes a sodium phosphate salt in a range of about 1 mM
to about 25 mM or in a range of about 5 mM to about 25 mM. In
certain embodiments, the composition including a polynucleotide of
this invention includes a sodium phosphate salt in a range of about
10 mM to about 160 mM or in a range of about 20 mM to about 40 mM.
In certain embodiments, the composition including a polynucleotide
of this invention includes a sodium phosphate buffer at a pH of
about 6.8.
[0166] Embodiments of transfer agents include surfactants and/or
effective molecules contained therein. Surfactants and/or effective
molecules contained therein include, but are not limited to, sodium
or lithium salts of fatty acids (such as tallow or tallowamines or
phospholipids) and organosilicone surfactants. In certain
embodiments, the composition including a polynucleotide of this
invention is formulated with counter-ions or other molecules that
are known to associate with nucleic acid molecules. Non-limiting
examples include, tetraalkyl ammonium ions, trialkyl ammonium ions,
sulfonium ions, lithium ions, and polyamines such as spermine,
spermidine, or putrescine. In certain embodiments, the composition
including a polynucleotide of this invention is formulated with a
non-polynucleotide herbicide e. g., glyphosate, auxin-like benzoic
acid herbicides including dicamba, chloramben, and TBA,
glufosinate, auxin-like herbicides including phenoxy carboxylic
acid herbicide, pyridine carboxylic acid herbicide, quinoline
carboxylic acid herbicide, pyrimidine carboxylic acid herbicide,
and benazol in-ethyl herbicide, sulfonylureas, imidazolinones,
bromoxynil, delapon, cyclohezanedione, protoporphyrinogen oxidase
inhibitors, and 4-hydroxyphenyl-pyruvate-dioxygenase inhibiting
herbicides. In certain embodiments, the composition including a
polynucleotide of this invention is formulated with a
non-polynucleotide pesticide, e. g., a patatin, a plant lectin, a
phytoecdysteroid, a Bacillus thuringiensis insecticidal protein, a
Xenorhabdus insecticidal protein, a Photorhabdus insecticidal
protein, a Bacillus laterosporous insecticidal protein, and a
Bacillus sphaericus insecticidal protein.
[0167] All of the materials and methods disclosed and claimed
herein can be made and used without undue experimentation as
instructed by the above disclosure. Although the materials and
methods of this invention have been described in terms of preferred
embodiments and illustrative examples, it will be apparent to those
of skill in the art that variations can be applied to the materials
and methods described herein without departing from the concept,
spirit and scope of this invention. All such similar substitutes
and modifications apparent to those skilled in the art are deemed
to be within the spirit, scope and concept of this invention as
defined by the appended claims.
Sequence CWU 1
1
4911125DNASpodoptera frugiperda 1ggtgacatgg ccaccatcca ggtatacgaa
gaaacatcag gtgtaactgt aggtgacccc 60gtgctgcgta ccggcaagcc cctgtccgta
gagctgggtc ctggtatcct cggctccatc 120tttgacggta tccagcggcc
actgaaggac atcaacgagc tcacacagtc catctacatc 180cccaagggtg
tcaacgtacc ctgccttgga cgtgatgtca cctgggaatt caaccccttg
240aatgttaagg tcggctccca catcaccgga ggagacttgt acggtatcgt
acacgagaac 300acattggtta agcataagat gttgatccca cccaaggcca
agggtaccgt cacctacatc 360gcgccctccg gcaactacaa agtcactgac
gtagtgttgg agacggagtt cgacggcgag 420aaggagaagt acaccatgtt
gcaagtatgg ccggtgcgcc agccccgccc cgtcactgag 480aagctgcccg
ccaaccaccc cctgctcacc ggacagagag tgctcgactc tctcttccct
540tgtgtccagg gtggtaccac ggccatcccc ggcgccttcg gttgtggcaa
gactgtcgtc 600tcacaggctc tgtccaagta ctccaactct gacgtcatca
tctacgtcgg atgcggtgaa 660cgtggtaacg agatgtctga ggtactgcgt
gacctccccg agctgacggt ggagatcgag 720ggcatgaccg agtccatcat
gaagcgtacc gcgctcgtcg ccaacacctc caacatgcct 780gtagccgccc
gagaggcttc catctacacc ggtatcaccc tctccgagta cttccgtgat
840atgggttaca acgtgtccat gatggctgac tccacctctc gttgggccga
agctcttcgt 900gagatctcag gtcgtctggc tgagatgcct gccgactccg
gttaccccgc ctacctggga 960gcccgtctgg cctccttcta cgagcgtgcc
ggacgtgtga agtgcctggg taaccccgac 1020agggagggct ccgtgtccat
cgtgggcgcc gtgtcgccgc ccggaggtga cttctccgac 1080cccgtgacgg
ccgccacgct gggtatcgtg caggtgttct ggggt 112522724DNASpodoptera
frugiperda 2aactatgaaa cacattcgca gatcaagaga ttcgaggtat gcgacctacc
ggtgcgcgcc 60gctaagttcg tgcctcgcaa gaactgggtg attactggct ccgatgacat
gcagattcgc 120gtgttcaact acaacacgct tgagagagtg cacgcctttg
aggcgcattc tgactacgtc 180aggtgcatcg cgatacatcc cacacagcca
tacatcctca ccagcagcga tgacctattg 240atcaagctgt ggaactggga
acgcaactgg gcatgccagc aagtgttcga gggccacaca 300cattatgtga
tgcagatcgt catcaaccct aaagacaaca acacattcgc tagtgctagt
360ctcgacacca ccgtcaaagt atggcagctt ggctcttcaa tttccaactt
cacattagaa 420ggccacgaga aaggcgtgaa ctgcgtcgac tactaccacg
gcggcgacaa gccttacctc 480ataagtggtg ccgacgatcg cctcgtcaaa
atatgggact accagaataa aacatgtgtc 540cagacattgg agagtcacac
gcagaatgtg acagccgtgt cgttccaccc ggagctgccg 600atcctgatga
ctggctcaga ggacggcacc atcagaatat ggcacgcagg cacttacaga
660cttgaatcct cgctcaacta tggcttcgag agagtctgga ccatttcctc
catgcacggc 720tctaacaacg tagctattgg ttacgacgag ggcacgatca
tgatcaaggt gggccgcgaa 780gagccggcca tttccatgga cgtcaatgga
ggcaagatta tttgggcgaa gcattctgag 840atgcagcaag tcaacctgaa
ggcgttgcca gaaggcacag agataaaaga tggagagcgg 900gttccagtta
tggcgaagga catgggatcc tgtgagattt atccacaaac tatagcacac
960aacccgaacg gtcggttcgt ggtagtgtgc ggggacggcg agtacattat
ttacacggcc 1020atggcactta ggaacaaggc gttcggcact gcacaggagt
tcgtctgggc gtttgatagc 1080tcagagtatg cgacacttga gaactccagc
accatcaagg tgttcaagaa cttcaaagag 1140agaaagagtt tcaagcctga
gtatggtgct gaaggaatat acggcggttt catgttgggc 1200gtgaagtcca
tcagcggtgt ggcgttctcc ttctatgatt gggagaactt ggagttgatc
1260agacggattg agatccagcc gcggcacgtg tactggtcgg agagcggcaa
cctggtgtgc 1320ctggcggctg atgactcgta ctacgtgctc aagtataatg
cagctgttgt gacgcgagct 1380cgcgaaacca actccaacat cacagaagac
ggcatcgaag acgcttttga ggtcgtgggt 1440gcagtgaacg aggtggtaaa
gacaggacta tgggtgggcg actgcttcat ctacacgaat 1500tccttgaaca
gaataaacta ctacgtcggc ggagagatcg tcaccatatc ccacctggac
1560cacaccatgt acatcctcgg atacgtcgct aaggagaaca gactgtacct
aaatgacaag 1620gagttgaaca tagtgtcgta ctcgctgctg ctgtcggtac
tggagtacca gacggcggtg 1680atgcgcgcag acttcgagac agcagaccgg
gtgctcccca ccataccgca agagcatcgc 1740accagagtcg ctcacttcct
agagaaacaa ggcttcaaac aacaagctct agcagtctct 1800acggagcctg
aacaccagtt cgagctggct ctctcactgg gagaacttag aagagcaaag
1860cagttggccg aggaggcggc attggccgag ggttccacct cccgatcctc
agcggcacgg 1920tggtctcggc tgggagcggc cgccgccgcc gctgcagaca
cggaactcac caaggcctgc 1980tatcagagcg ctaaggacta cagtgccctc
cttctattcg cagctagtac tggtgacaaa 2040gaactgttga agagtgtagc
acagatgtcc tcggaggaaa acgcggagaa tatctcattc 2100gtggcctact
ttatgctgaa tgatctcgaa tcctgtctga agctgctcat acagcgggac
2160aagctgcctg aagccgcctt ctttgccaga tcatacattc catcgaaaat
gtcggaagtg 2220gtgaagttat ggcgcgagtc caccagcgcc accaacacga
agctcggcca gtcgctcgcc 2280gacccggagc agtatgagaa tttgttcccc
gagtttgcgc aatcattgga gttggagaga 2340tttcagcgcg agtatgggta
cgagcagagt tgcttgctag cgaacttgcc ggtcgactcg 2400aagacttgca
accttgagcg taaccttgcc accgagaagg aggaggccga gcaacgcggc
2460tttaagctga gctccgctgc agtggcgcgg tctcctgcac acagctcaaa
tgatcttggt 2520cctgacgacc gagtcacaaa caatgatagt ccttcccacc
cggtgccgga gagcacggtg 2580gcgaccgcgg cgcagcagga tctgaagaaa
cggcgcgact ctctcgacat catggaggaa 2640ctggagcgcg agatcgaaga
catcgtcctg gacggcacgg tcgagagcgt ggatctgtcg 2700gacgatgtag
atttcatgga ctaa 272432838DNASpodoptera frugiperda 3atgtgtataa
gagacagcta tactctgatc aacttcccga ctgattcaga gccttacaat 60gagatgcagc
tcaagctgga tcttgagaaa ggygacacaa agaagaaaat agaagcatta
120aagaaggtaa taggtatyat cytktctggk gagaagatwc cyggtctatt
gatgatcatc 180atccgattyg tgctgcccct gcaagaccac accatcaaga
agctgttgct katcttctgg 240gaaatagtgc caaagaccac tcctgatggc
aagctcatgc aggagatgat ccttgtctgt 300gatgcttaca gaaaggatct
gcaacacccc aatgagttca tccgtggctc caccctgcgc 360ttcctctgta
aactgaagga gcctgaactc ctcgagcctt tgatgcccgc catcagagct
420tgtcttgacc accgccactc atatgtcagg aggaatgctg ttcttgccat
atttactatc 480tacaggaact ttgaattcct gatccctgat gctccagagc
tagtagcaaa cttcttggag 540acagagcagg acatgtcctg caagaggaat
gcatttctta tgctgctcca tgctgaccag 600gagcgggcac tgtcctacct
ctcatccagg ctggataatg tacagggctt tggagatatc 660cttcagttgg
ttattgtaga acttatttac aaggtttgcc acgcgaatcc atcagagagg
720tctcgtttca tccgtacagt atacggctta ctgaacgcga ccagtgccgc
cgtgcggtac 780gaggctgccg gtactctcgt tacactgtct aacgcgcctg
ctgctatcaa ggcggcggca 840gcatgctaca tcgacctaat agtgaaggag
agcgacaaca acgtgaagct gatagtggtg 900ggtcggctgg gagcgctgcg
cgcggaggcg ggcgaggcgg cggcgcgcgc gctgcccgag 960ctggccatgg
acgtgctgcg cgtgctggcc gcctccgacc tggacgtgcg ccgacacacg
1020ctggcgctgg cgctcgacct cgtgtcctcc cgccacgccg aggacctcgt
gcaggtgctg 1080cggaaggagg ccgcccgggc taccaacgca gaccacgatg
atgctgccaa gtacaggcag 1140ctacttgtta gagctctgca ccgagctgca
ctcaagttcc ccgaagtagc cggcagtgta 1200gccccggcgc tgctggagtt
gctgggcgac ggcagtgagc cggccgcgca ggatgtcatg 1260ctgttcctac
ggtccgctct acataccttc gtgacctacg gatcatatct accagaaact
1320gttggaggcg gtgcccggta tcaaagtggt aagatagcgc ggtctgcgct
gtggctgctg 1380gcccagttcg ctgagactcc ggaacgcgcc aaggatgcct
tggatgtact cgccaacgtc 1440ataccttccc ttagcggaca agaggataag
gaagaatccg agtcggcagc taaggcccag 1500gacacttcag ctccacgaca
gcttgtcacc agtgatggaa cttatgcttc gcagtctgct 1560tttaacttgc
cagttagcca agcggctcca acccacgcgg gtctatgggc ggcactaggc
1620gagggcgaga gcttcacggc ggcgtgcgcg tgctcggcgc tgtgcaagct
ggcgctgaag 1680ctgtcgggcc gggccgcgac cgccgcgctg cagctggccg
cgcgcctgct ggccgcccac 1740aagctggccg ccggcctcac cgccgacgac
gccgagcacg gcgcgcgatg tatactggcc 1800gcgagacacc gcccgcccgt
cgtacaggaa gcgctgctgc aacgctcctc tgctgcgctc 1860gccgcgctgc
tagcgctgcc tgaccgagct actaatctgc ttgatgatgc tgataaggaa
1920cgtgagccaa agaagcaaga caacaaggtg gaggtggaac aaggcatcgt
gttcgcccag 1980ttggctggga actccgccgc ctccacacac cacgacatgt
tcgagctatc gctcactaag 2040gcactgcaag gccgcagtac cggcgtgagc
gaggagcgcg gcaagctgtg gaaggtgacg 2100cagctgaccg ggttctccga
ccccgtgtac gccgaggcca tcgtcgccgt caaccagtac 2160gacatcgtgc
tcgacgtact cgtcgtcaac cagaccgacg acacgctgca gaactgctgc
2220gtggagctgg cgacgctggg cgacctgcgg ctggtggagc ggcccggggc
cgtggtgctg 2280gcccccaggg actacgccac catcaaggcg cacgtcaagg
tcgcctccac cgagaacggc 2340atcatcttcg ggaacattgt gtacgaggta
tcgggcgcgt cgatggaccg cggcgtggtg 2400gtcctgaacg acatccacat
cgacatcgtg gactacatcc agcccgccgt ctgcaccgac 2460gcagacttca
ggcagatgtg ggccgagttc gagtgggaga ataaggtgtc cgtgaacacg
2520aacatcacgg acctgcgcga gtacttacaa catttactag cttccacaaa
catgaagtgt 2580ttgacgcctg aaaaggcatt atcgggtcaa tgcgggttca
tggcagccaa cctgtacgcg 2640cggtccatat tcggcgagga cgcgctggcc
aacctgagca tcgagacccc gctgcacaaa 2700cccaactcgc ccgtcgtcgg
acatgtcagg atcagggcca agagccaggg tatggcgctg 2760tctctaggcg
acaaaatcaa catgatgcac aagacgccgc aacagaagac cccctccaac
2820cccatccccg ccgcgtaa 283842097DNALygus hesperus 4ggttggtggt
ttggttggac tggacgacat tctgcgaagt taactttgtc tacaaataac 60agattcaacc
atggctttac ccagaatccg tgatgaggag aaagaatcca gatttggata
120tgtattcgcc gtttctggcc ctgtcgtcac tgcggagaag atgtcggggg
ccgctatgta 180cgagctggtg cgcgtcgggt acttcgagtt ggtcggcgaa
atcattcgtc ttgaaggaga 240catggccacc attcaggtct acgaagaaac
atccggtgta acagttggag atcccgtgtt 300gagaactggg aaaccacttt
cggtggagct cggtccgggt attatgagca gcatttttga 360cggtattcag
cgacctttga aagacatttg cgagctgact cagagcatct acatccccaa
420gggagtcaac gttccagctc tgtccaggtc tattgcatgg gacttcactc
cgtccaacaa 480tatcaaggtg ggagcacaca tcactggtgg tgatttgtat
gccgtcgttc acgaaaacac 540gcttgtcaag caaaaaatga tcatgccggc
cagaggaagg ggtaccgtga aatacatcgc 600tccccctggc aactacactg
ttgatgacgt cgtaatggaa actgaattcg acggagagaa 660aactgaaatc
aagatgttgc aagtttggcc tgtccgacag ccccgtccag ttgccgaaaa
720actgcctgct aactatccac tcttgactgg tcaacgagtt ttggatgccc
tcttcccgtg 780tgtccaaggt ggtaccaccg ccattcccgg tgccttcggc
tgtggaaaaa ctgtcatctc 840acaagctctg tccaaatact caaactctga
cgtcatcatt tacgtcggat gcggtgaacg 900tggtaacgaa atgtctgagg
tattgagaga tttccccgaa ctcacagttg agattgacgg 960tgtaactgag
tccatcatga agcgtactgc tctggtcgcc aacacatcca acatgcctgt
1020agctgctcga gaagcttcca tttatactgg tatcacattg tccgaatact
tccgtgacat 1080gggttacaac gtgtcgatga tggctgactc cacctctcga
tgggccgaag ccttgagaga 1140aatttcaggt cgtctcgctg aaatgcctgc
tgacagtggt taccctgcct acttgggagc 1200ccgtttggct tccttctacg
agcgagctgg tcgtgtcaaa tgtcttggaa gtcccgacag 1260agagggctca
gtcagtatcg tcggtgccgt gtcgcctcct ggtggtgact tttcggatcc
1320tgtcacttca gccacccttg gtatcgtaca ggtcttctgg ggtctcgaca
agaaattggc 1380acaaaggaaa cacttcccct ccatcaactg gctcatctct
tacagtaagt acatgagagc 1440tttggacgac ttctatgaca aacggtaccc
tgaattcgtg cccctgagga ccaaggtcaa 1500ggagatcctc caggaggaag
aagatttggc tgaaattgtg cagctcgtcg gtaaaggttc 1560gctggccgag
tctgataaga tcacattgga aatcgctaag atcttgaaag acgatttctt
1620gcaacaaaac agctactcgc cctacgacag attctgtccg ttctacaaga
cggtcggtat 1680gttgaagaac atgatctctt tctatgatct tgcgaggcac
acggtggaat caacagcaca 1740aagcgacaac aagatcactt ggactgtcat
caaagaaagc atgggcaaca tcctctacca 1800gctgtcctca atgaaattca
aggaccccgt caaagacgga gaagccaaga tcaaaggcga 1860cttcgaacag
ctccacgaag acatgcaaca agctttccgc aacctcgaag actaaacagt
1920tttctcgttc gctaccttat tgttgacaat agtggcacta cagattaact
tcagtgcaat 1980ttttaacagc aaccgcaaat atcctcctcc tccccccctt
gaaactcata ctatcgttac 2040acaatttgta catataaaaa cacgtctgtt
gtaattacac ataattattg tatatct 20975701DNALygus hesperus 5ggtggttctc
ttcgtccgac catgagttcg ctcaaactgc agaagaggct cgccgcctcg 60gtgatgagat
gcggcaagaa gaaagtgtgg ttggacccta atgaaatcaa cgaaatcgcc
120aacaccaact ctaggcaaaa catccgtaag ctgatcaagg atggtttgat
catcaaaaag 180cctgtggctg tccactccag agcccgcgtc cgtaaaaaca
cagaagccag acggaagggt 240cgtcactgtg gcttcggtaa gaggaagggt
accgccaacg ccagaatgcc tgtgaaggtc 300ctgtgggtca acagaatgag
agtcctgcga cggctcctta aaaaatacag agaagccaag 360aagatcgata
ggcaaatgta ccacgacctt tacatgaaag ccaaaggtaa cgtcttcaaa
420aacaagaggg tactgatgga cttcattcac aagaagaagg ctgaaaaggc
gagatcaaag 480atgttgaagg accaggcaga ggcgagacgt ctcaaggtca
aggaggcgaa gaagaggcgc 540gaggagagga tcgccaccaa gaagcaagag
atcatgcagg cgtacgcccg agaagacgag 600gctgccgtca aaaagtgatc
tcgccccctc cgtttttaaa ttttaaacaa aaaacgtatt 660ttgtacaaaa
atctacaaaa aaattacaaa agagaaaact t 70162817DNALygus hesperus
6atgcctctca aattggacat caagagaaag ctgtctgctc gatcagaccg tgtgaaatgt
60gtcgatctgc acccaactga gccctggatg ttggcttctc tctacaacgg aaacgttcac
120atttggaacc acgaaactca acagcttctg aaatccttcg aagtatgcga
gcttccaatc 180agggctgcag ttttcgtacc gaggaagaac tgggtggtca
caggctcgga cgacatgcac 240gttcgtgtct tcaactacaa cactctcgag
cgtgtacatt ccttcgaggc ccattctgat 300tatttgagat gcatcatcgt
acatcctaca cagccttaca tattgacgtg cagcgatgac 360atgctgatca
agctgtggaa ctgggaaaaa aactggctgt gccagcaagt cttcgaaagc
420cacacccatt acgtcatgca gatcgtgctg aacccgaagg ataacaacac
tttcgcctct 480gcctcgctcg accacacgct caaagtgtgg cagttgggct
cagcagcggc caacttcact 540ttggacggac acgaaaaagg agtgaactgc
gtcgactact accacggagg agataagcct 600tatctcatct ctggcgcgga
cgatcacatg gtcaaaatat gggattacca gaacaaaacg 660tgcgtccaga
ctttggaggg acacgctcaa aatataactg cagtttgctt ccacactgaa
720ctaccaatcg caattactgg ctcggaagat ggaaccgttc gcttgtggca
ctcagccacc 780tatcggttgg aatcgtcctt gaactacggc tttgaaagag
tatggaccat acgctgtctc 840aaaggctcaa accacattgc tcttgggtac
gacgagggtt ccattatggt caaagttggt 900cgagaagaac cggccatttc
catggatgta aatggagaaa aaattgtttg ggctcgacat 960tctgaaatcc
agcaggtcaa tttgaagtct ctcatgactg acgagagtga aattcgcgat
1020ggggagaaac tcccagtagc agctaaagac atgggtccct gcgaagtttt
cccgcaaagc 1080atcgcccaca accccaatgg aagatttgtg gttgtttgcg
gtgatggaga atacatcatc 1140tacactgcca tggctttgcg taataaaagt
ttcggttccg cgcaagagtt cgtctgggcg 1200caggactcgt ccgactacgc
catccgcgaa gggacgtcta cggtccgact tttcaggcag 1260ttcaaggaaa
ggaagaactt caagcctgaa tttggagctg aaggtatttt tgggggacag
1320cttctcggag ttaggactgt aactggactg tccctctacg actgggaaac
tttggagttg 1380atcagaagca tcgacattca agcgaaagcg ctgtactggt
ccgaagcagg gcatctcttg 1440gcaatcgtta ctgacgacag ttactatctc
ttgaaattcg accagagcgc catctcgacg 1500tccacccctg gaactgacgg
ctacgaagat gcctttgagc tcgtcggtga agtcaatgat 1560actgtcaaga
ccggattgtg ggttggtgac tgtttcatct acacaaacgc cgtttgtcgg
1620atcaactact acgtaggtgg tgagatcgtc accgtggctc acctcgacac
tacaatgtac 1680ctcctaggat acgtggcccg tcagaacctg ctgtacctgt
gcgacaagca tcataacatc 1740atttgttaca cgttgcttct gtctgtcctc
gaatatcaga ctgctgtgat gaggagagac 1800tttgaaactg ctgaccgagt
tttgcccact attcctgttc agcatcgctc aagagttgct 1860catttcctgg
agaaacaggg cttcaaaagg caagctctgg ctgtgtccac ggatgccgag
1920cacaagtttg aacttgcgct tcagctcagt gatttggaag cagcagtcgg
cctagcgagg 1980gaaatcggca gcaaagccaa gtgggttcag gtcgccgagt
tggcgatgtc agaggccaag 2040ctcggactcg ctcagatgtg cttgcatcag
gcacagcact acggaggact tctgctcctg 2100tcaacttctg ccggaaatgt
ggacatgatg gagaaactgg ccgaaagctc gctgtccgat 2160ggcaaaaaca
acgtctcgtt cctcacttac ttcctgatgg gtaacgtgga aaagtgtctc
2220caaatcctca tcgatactgg aagaattccg gaagcagctt tcttcgcccg
gacctatatg 2280cctaaagaag tgtcccgcgt ggtcgacatg tggaaaactc
tttctaagga caagacgggg 2340caatcgctcg ctgacccagc ccaatacccg
aatctattcc ccaagcacac cgaggctctg 2400aaagccgaac agttcatgaa
gaaggaattg actcaaagga ttcccgcctc gtcgcacaag 2460gatataaaac
ccaactacga aaggaatgcc attgaagaaa tgaaagaagc cgaagcaaac
2520ggtctgttca cgtatgatcc tccagtggct cctgccagta tcaacaatct
aattgatgtt 2580tctgaaccgg cgaatcgatc tgagcccagc ccgtccgaaa
tcttctccga agcgcccgcc 2640gtgtccaaga tgaccagcga cgctcggccg
ctggtcgcgc cagttccgcc tgccgcgaga 2700cctcaaaaac ggccgtcggc
cttcgatgat gacgacctcg aattggaaat cgaaaatatg 2760aatttggatg
acatcgatgc tagtgatttg aacgaagaag acctccttat agattag
281775621DNALygus hesperus 7actcgttcta gatcgcgacg gacgcgtgga
cgagaaacga gaacgagcta cgttgagcat 60caagagcttt tgtactattg aaattgtgaa
aaatgcagat cttcgttaaa actttgactg 120ggaagaccat caccctcgag
gtcgagcctt ctgataccat tgaaaacgtg aaggcgaaaa 180ttcaggataa
agaaggcatc cccccagatc agcagaggtt gatctttgcc ggcaagcagt
240tggaagacgg acgtactttg tctgactaca acatccaaaa agaatccact
ctccacctgg 300tcttgagatt gagaggtggc atgcagatct tcgtgaagac
cctcacagga aagaccatca 360ctcttgaggt cgagccttct gacaccatcg
aaaacgtcaa ggctaaaatt caagacaagg 420aaggtattcc tccagatcag
cagagattga tcttcgccgg caaacaactc gaagatggcc 480gtaccctctc
tgactacaat attcaaaaag agtccaccct tcacttggtg ttgagattgc
540gtggaggtat gcaaatcttt gtcaaaacat tgactggaaa gaccatcacc
cttgaagtcg 600aaccctccga caccatcgaa aatgtcaagg ccaagatcca
ggacaaggaa ggcatccccc 660cagatcagca gaggttgatt ttcgctggca
aacaacttga agacggacgt accctctcgg 720actacaacat ccagaaggag
tcgaccctcc atcttgtcct ccgtctgcgt ggtggtatgc 780agatttttgt
caaaactctg actggcaaga caatcaccct tgaagtagag ccctctgaca
840ccatcgaaaa tgtcaaggcg aaaatccagg acaaagaagg catcccccca
gatcagcaga 900ggttgatctt tgccggtaag cagcttgaag acggccgcac
cctctcggac tacaacatcc 960agaaggagtc cacccttcat cttgtcctac
gtctgcgtgg tggtatgcag attttcgtaa 1020agaccttgac tggcaagacc
atcactcttg aggttgagcc ctctgacacc atcgaaaacg 1080tcaaggccaa
gatccaggac aaggaaggta tccccccaga tcagcagagg ttgatcttcg
1140ctggcaagca gctcgaagat ggtcgtaccc tctcggacta caacatccag
aaagagtcca 1200cccttcatct tgtcctccgt ctgcgtggtg gtatgcagat
tttcgtaaag accttgactg 1260gcaagaccat cactcttgag gtcgagccct
ctgacaccat tgaaaacgtc aaggccaaga 1320tccaggacaa ggaaggtatc
cccccagatc agcagaggtt gatcttcgcc ggtaagcaac 1380ttgaagacgg
ccgtaccctc tcggactaca acatccagaa ggagtccacc cttcatcttg
1440tcctccgtct gcgtggtggt atgcagatat tcgtaaagac cttgactggc
aagaccatca 1500ctcttgaggt cgagccctct gacacccttg aaaaccgcaa
ggccaagatc caggacaagg 1560aaggtatccc cccagatcag cagaggtgtg
atcttcgccg gtaagcaact tgaagacggc 1620cgtaccctct cggactacaa
catccagaag gagtccaccc ttcatcttgt cctccgtctg 1680cgtggtggta
tgcagatatt cgtaaagacc ttgactggca agaccatcac tcttgaggtc
1740gagccctctg acaccattga aaacgtcaag gccaagatcc aggacaagga
aggtatcccc 1800ccagatcagc agaggttgat cttcgctggc aagcagctcg
aagatggtcg taccctctcg 1860gactacaaca tccagaaaga gtccaccctt
catcttgtcc tccgtctgcg tggtggtatg 1920cagattttcg taaagacctt
gactggcaag accatcactc ttgaggtcga gccctctgac 1980accattgaaa
acgtcaaggc caagatccag gacaaggaag gtatcccccc agatcagccg
2040aggttgatct tcgctggcaa gcagctcgaa gatggtcgta ccctctcgga
ctacaacatc 2100cagaaagagt ccacccttca tcttgtcctc cgtctgcgtg
gtggtatgca gattttcgta 2160aagaccttga ctgggaagac catcactctt
gaggtcgagc cctctgacac cattgaaaac 2220gtcaaggcca agatccagga
caaggaaggt atccccccag atcagcagag gcagatcttc 2280gccggtatgc
aacttgaaga cggccgtacc ccgagaaacg agaacgggct acgttgagca
2340tcaagagctt ttgtactatt gaaattgtga aaaatgcaga tcttcgttaa
aactttgact 2400gggaagacca tcaccctcga ggtcgaacct tctgatacca
ttgaaaacgt gaaggcgaaa 2460attcaggata
aagaaggcat ccccccagat cagcagaggt tgatcttcgc cggtaagcag
2520cttgaggatg gacgtactct ctcggattac aacatccaga aggagtcaac
cctccacctt 2580gtcctccgtc tgcgtggtgg tatgcagatc ttcgtcaaga
ccttgactgg caagacgatc 2640actttggaag tcgagccctc tgacaccatt
gagaatgtca aagccaaaat ccaagataag 2700gaaggcatcc ccccagatca
gcagaggttg atcttcgccg gtaagcagct tgaagacggc 2760cgtactctct
ctgattacaa catccagaag gagtcgaccc tccaccttgt cctccgtctt
2820cgtggtggta tgcagatttt cgtaaagacc ttgactggca agaccatcac
ccttgaggtc 2880gagccctccg acaccatcga aaacgtcaag gccaagatcc
aagataagga aggcatcccc 2940ccagatcagc agaggttgat cttcgccggt
aagcagcttg aggatggacg taccctgtca 3000gactacaaca tccaaaagga
gtccaccctg cacttggtgt tgagattgcg tggtggtatg 3060cagatcttcg
tcaagacctt gactggcaag acgatcactt tggaagtcga gccctctgac
3120accattgaga atgtcaaagc caaaatccaa gataaggaag gcatcccccc
agatcagcag 3180aggttgatct tcgctggtaa gcaacttgaa gacggccgca
ccctctctga ctacaacatc 3240cagaaggagt cgaccctcca tcttgtcctc
cgtctgcgtg gtggtatgca gattttcgtg 3300aagaccttga ctggcaagac
catcaccctt gaagtcgagc cctctgacac cattgagaat 3360gttaaagcca
agatccagga caaggaaggt atccccccag atcagcagag gttgatcttc
3420gccggtaagc agcttgaaga cggccgtact ctttcggatt acaacatcca
gaaggagtcg 3480accctccacc ttgtcctccg tctgcgtggt ggtatgcaga
tcttcgtcaa gaccttgaca 3540ggcaagacca tcacccttga agtcgagccc
tctgacacca tcgaaaacgt caaggctaag 3600atccaggaca aggaaggcat
ccccccagat cagcagaggt tgatcttcgc cggtaaacag 3660cttgaagacg
gacgtaccct ctcggactac aacatccaaa aggagtccac tcttcacttg
3720gtgttgagat tgcgtggtgg tatgcagatc ttcgtcaaga ccttgacagg
caagaccatc 3780acccttgaag tcgagccctc tgacacaatt gaaaacgtca
aggccaagat ccaggacaag 3840gaaggtatcc ccccagatca gcagaggttg
atcttcgccg gtaagcagct tgaagacggc 3900cgtactctct ctgattacaa
catccagaag gagtcgaccc tccaccttgt actccgtctg 3960cgtggtggta
tgcaaatttt cgtgaagacc ttgactggca agaccatcac tcttgaggtc
4020gagccctctg acaccattga aaacgtcaag gccaagatcc aggacaagga
aggtatcccc 4080ccagatcagc agaggttgat cttcgccggc aagcagctcg
aagacggccg tactctctct 4140gattacaaca tccagaagga gtccaccctt
catcttgtcc tccgtctgcg tggtggtatg 4200cagattttcg tgaagacctt
gactggcaag accatcactc ttgaggtcga gccctctgac 4260accattgaaa
acgtcaaggc caagatccag gacaaggaag gtatcccccc agatcagcag
4320aggttgatct tcgctggcaa gcagctcgaa gatggtcgta ccctctcgga
ctacaacatc 4380cagaaagagt ccaccctcca ccttgtcctt cgtctgcgtg
gtggtatgca gattttcgta 4440aagaccttga ctggcaagac catcactctt
gaggtcgagc cctctgacac cattgaaaac 4500gtcaaggcta agatccagga
caaggaaggc atccccccag atcagcagag gttgatcttc 4560gccggtaagc
agcttgaaga cggccgtact ctctctgatt acaacatcca gaaggagtcg
4620accctccacc ttgtcctccg tcttcgtggt ggtatgcaga ttttcgtgaa
gaccttgact 4680ggcaagacca tcacccttga ggtcgagccc tccgacacca
tcgaaaacgt caaggccaag 4740atccaagata aggaaggcat ccccccagat
cagcagaggt tgatcttcgc cggtaagcag 4800cttgaggatg gacgtactct
ctcggattat aacatccaga aggagtcaac cctccacctt 4860gtcctccgtc
tgcgtggtgg tatgcagatc ttcgtcaaga ccttgactgg caagacgatc
4920actttggaag tggagccctc tgaccccatt gagaatgtca aagccaaaat
ccaagataag 4980gaaggcatcc ccccagatca gcagaggttg atcttcgccg
gtaagcaact tgaagacggc 5040cgcaccctct ctgactacaa catccagaag
gagtccaccc tccatcttgt ccttcggctg 5100cgtggtggta tgcagatctt
cgtcaagacc ttgacaggca agaccatcac ccttgaagtc 5160gagccttctg
acaccatcga gaacgtcaag gccaagatcc aggacaagga aggtatccct
5220ccagatcagc aaagattgat cttcgccggc aaacagctcg aagatggccg
taccctctca 5280gactacaaca ttcaaaagga gtcaactctt catctcgttc
tgaggctccg tggcggtcgt 5340tattgatcac aattccaaac ttaaaaattg
cattccgatt ttccttcttt atttggcaaa 5400aaatacatac cctagttaat
taaaatgact tgaaatttga ttttttaaga atgcttcaaa 5460tttttttata
gatggtttgt tacatagaca atacacaaca tgttgaaagc ataaaaaaaa
5520aaaaaaaaaa aaaaaaaaaa aaaaaaaaac caaaaaaaaa aaaagggggg
gcccgttcaa 5580aaggaccaaa gttaacgacc gcgggatggc aacgcattac t
562181927DNAEuschistus heros 8gtttgttgta gttacaggtt ttaatttggt
tcacatccta agttcggcaa ttcagatgtc 60tacttccaaa acagaagaaa agcccttgtg
ggacgaaaga atggagcaag ctttaggtga 120agaaatcatg agaatgtcta
cggatgaaat tgtcagtcgt attaggcttc ttgataatga 180aattaaaatc
atgaaaagtg aagtcatgcg agtcagtcat gagttgcagg cacaaacaga
240aaaaattaag gaaaatacag aaaagatcaa agtgaacaaa actttaccat
atttagtatc 300taatgtgata gagttgcttg atgttgatcc agaggaaact
gaggaagatg gtgctgttgt 360tgaccttgat gcccgtcgta aaggaaaatg
tgctgtcatt aaaacatcaa cgaggcagac 420ttattttttg ccagtaatag
gcttagttga tgctgaaaag ttaaagccag gtgatctggt 480tggagtaaac
aaagattctt atttaattct tgaaaccttg cctgctgagt atgatgcacg
540agttaaagca atggaagttg atgaaagacc tactgagcag tattctgata
tcggtgggct 600tgataagcag attcaagaat taatagaagc cgttgttctt
cctatgacac acaaagaaaa 660atttgaaaat ctaggaattc atcctcctaa
aggtgtattg ctctatggac ctcctggaac 720aggaaagact ttactggcta
gagcgtgtgc agctcaaact aaatcaactt ttttgaaact 780agctggaccc
caacttgttc agatgtttat aggagatgga gccaaacttg tcagagatgc
840ttttgctctt gctaaggaaa aatctcctgc tattatcttt attgacgagt
tggatgctat 900tggaacaaaa agatttgatt ctgaaaaagc tggtgatcga
gaagttcaaa gaactatgtt 960agaactgctc aaccagttag atggatttag
ctcaacagct gatattaagg ttattgcagc 1020tacaaataga gtagatattt
tggatcccgc ccttttgcgt tcaggtcgac tagacagaaa 1080aattgaattc
ccacatccta acgaagatgc ccgagcacgt ataatgcaaa ttcattctcg
1140taagatgaat attagtgttg atgttaattt tgaagaactt gctcgttcaa
ctgatgattt 1200caatggagct caatgcaaag cggtttgtgt ggaagcaggt
atgatagcat tgcgaagagg 1260agctggagtt gtcactcatg aagatttcat
ggatgcaata ttagaagtgc aggcaaagaa 1320gaaagccaac ttaaactatt
atgcttaaat atctattgat aaagattttt ttaataatgc 1380agaaactcac
ttgcattctt cttttcggga gtgccaataa ctgtgattga ttttgtattg
1440ttattaactt gtaaatatgc cactctttga aaaacaaatg tgtaagtaaa
ccaacaagta 1500aaatagcaca ttataatttt attaaattct taaagtcgca
ttaactccag ttaaaaaagt 1560tttgttaatt catatatata tatatatttt
tgcctgttta attttaaaaa gattatattt 1620tctgtatcaa ttattagttt
gactaatttg attactagtt tgaaatgagt ttctgccaga 1680tttaatattt
aatttttatt tttataatca ttttcaaaat taattatttg ttggttcaca
1740gtttattgaa tatattctaa tctcaaattt gttttttaat ttattttttc
attgcattta 1800atattttttg gattaaattg aaaggagatt aaacttcctg
ttgcaaaatt ttttttcagt 1860gattctttat attatttgta tatttataaa
tttgggaaac atttaataat atcatgttat 1920gtttgtt 192792170DNAEuschistus
heros 9ttacattaga agttgagcct tctgacacaa tagaaaatgt caaggccaaa
atccaagaca 60aagaaggaat ccctccagac caacagaggt tgtatttttg ctggtaaaca
gcttgaagat 120ggccgtactc tttcagatta caatattcaa aaagaatcta
ctttacattt agtacttcgg 180ttgagaggag gcatgcaaat ttttgtgaag
accttgactg gtaaaaccat caccttggaa 240gtggagccat ctgatacaat
tgaaaatgtt aaagctaaaa ttcaagataa agaaggaatt 300cctccagacc
aacagaggtt gatttttgca ggtaaacagc tcgaagatgg tcgtacattg
360tctgactata atattcaaaa ggaatctact cttcatcttg tcctacgttt
aagaggaggc 420atgcagatct ttgtcaagac acttactggt aaaacaatca
cacttgaagt tgagccttca 480gacacaattg aaaatgtgaa agctaaaatt
caagataaag aaggaattcc tccagatcag 540cagaggttga tttttgcagg
taaacagctc gaagatggtc gtacattgtc tgactataat 600attcaaaagg
aatctactct gcatttggtc cttcgtctga gaggaggaat gcaaattttt
660gtaaaaacct tgactgggaa aactattaca ttagaagtgg aaccttctga
cactattgaa 720aatgttaaag ctaaaattca agataaggaa ggaattccac
cagatcagca gcgattgatc 780tttgctggaa aacagttgga agatggtcgt
actttatctg attataacat tcagaaggaa 840tcaacactac atttagtatt
acgtttaaga ggtggaatgc agatttttgt taagacgctt 900actggaaaaa
ccataacttt agaagttgaa ccgtcagata ccattgaaaa tgtaaaagcc
960aaaattcaag ataaggaagg aattccgcca gatcagcaaa ggctgatctt
tgcaggaaaa 1020cagttagaag atgggcgtac tctttctgat tacaacatcc
aaaaggaatc tactttacat 1080cttgtactta gacttcgagg aggcatgcag
atctttgtca agactttaac agggaagacc 1140atcaccttag aagttgaacc
atctgatact attgagaacg taaaagcaaa aatccaggac 1200aaagaaggaa
ttccaccaga ccagcaacgt ttgatctttg ctggaaaaca acttgaagat
1260ggccgtaccc tttcagatta taatattcaa aaagagtcta ctcttcatct
tgtacttcgc 1320ttgagaggtg gcatgcagat ttttgtaaag actctaactg
gtaagaccat aaccttggaa 1380gttgagcctt cagatactat tgagaatgtt
aaagccaaaa ttcaagataa agaaggaata 1440ccaccagacc aacagaggct
tatttttgct ggaaagcagc tggaagatgg ccgaactttg 1500tctgattaca
acattcaaaa ggaatcaaca ctgcatttgg tgcttcgtct aagaggaggc
1560atgcagatct ttgtgaagac tttgacaggt aaaaccatta ccttggaagt
agagccatct 1620gatacaattg agaatgtaaa agctaaaatt caggataaag
aaggaattcc tcccgaccag 1680cagcgtttga tctttgctgg aaaacaactc
gaagatggcc gtaccctttc agattataat 1740atccagaagg aatctacact
acatctggtc cttcgattga gaggtggtat gcagatcttt 1800gtcaagaccc
tcacaggcaa gactattacc ttagaagttg agccatctga cactattgaa
1860aatgttaaag ccaaaattca ggacaaagaa ggaatacctc cagatcagca
gaggcttatt 1920tttgctggaa aacaattaga ggatggtcgt accctatctg
attataacat ccagaaggaa 1980tcaactctgc atttagtgtt gcgtcttagg
ggcggatatt aaggctactt atcatttcat 2040tccatcaaaa ttccatatca
gtaaattgct tttgatattt ttattagcat tttcattatt 2100atatttataa
ttatttcata aatacaatgt aactaaacta gaaataaaca gtttctttaa
2160gttcaaaaaa 2170102360DNAPlutella xylostella 10atgagtcacg
ggttgaagag gattgccgac gaggacaatg aaacccagtt cggttatgtc 60ttcgctgtgt
ccggtcccgt ggtcacagcg gagaagatgt ccggctcggc catgtacgag
120ctggtgcgcg tcggctacaa cgagctggtc ggcgagatca tccgtctgga
gggggacatg 180gccaccatcc aggtgtacga agagacctca ggcgtgaccg
tcggcgaccc cgtgctgcgc 240accggcaagc ctctctctgt agaactggga
cccggcatcc tcggctccat cttcgacggc 300atccagcggc cgctgaagga
catcaacgag ctcacgcaga gcatctacat ccccaagggg 360gggaacgtgc
ccgcgctggc ccgcgacacc gagtgggagt tccacccgca gtacatcaag
420agcgatgtct cggctggtat ccgaaccccg gtctccgccg ggcgcgtcct
cggctccatc 480tccgacggca tccagcggcc gctgaaggac atcaacgagc
tcacgcagag catctacacc 540cccaaggggg tgaacgtgcc cgcgctggcc
cgcgacaccg agtgggagtt ccacccgcag 600tacatcaaga gcgatgtctc
ggccggtatt cgaaccccgg tctccgccgg gcgcgtcctc 660ggctccatct
ccgacggcat ccagcggccg ctgaaggaaa tcaacgagct cacgcagagc
720atctacatcc ccaaggcggt gaacgtgccc gcgctggccc gcgacaccga
gtgggagttc 780cacccgcagt acatcaagcg ttgtcctgtc tctgccggta
ttcgaacccc ggtctccgcc 840gggcacgtcc tcggctccat ctccgacggc
atccagcggc cgctaaagga catcaacgag 900ctcacgcaga gcatctacat
ccccaagggg gtgaacgtgc ccgcgctggc ccgcgacacc 960gagtggcagt
tcaacccgca gtacatcaag gtcggcaccc acatcaccgg cggagacttg
1020tacgggatcg tgcacgagaa cacgctggtg aagcaccgca tgctggtgcc
gcccaaggcc 1080aagggcaccg tcacctacat cgcgcccgag gggaactaca
aagtcactga cgtggtccta 1140gagaccgagt tcgacggcga gaagtcctcc
tacaccatgc ttcaagtgtg gccggtgaga 1200cagccgcggc cgtgcaccga
gaaactaccc gccaaccacc ccctgctgac cgggcagaga 1260gtgctcgact
cactgttccc caacagtgac tgcatggaga aactagccaa tcacccgctg
1320ctgatcggcc agagagtgct cgaatcactg ttcccttgcg tccagggcgg
caccacggcc 1380atccccgggg ccttcggttg cggcaagacc gtcatctcgc
aggcgttgtc caagtactcc 1440aactctgacg tcatcgtcta tgtcgggtgt
ggggagcgtg gtaacgagat gtccgaagta 1500ctgcgtgact tccccgagct
gacagtcgag atcgacggcg tgaccgagtc catcatgaag 1560cgcacggcgc
tcgtggccaa cacctccaac atgccagtgg ccgcccgaga ggcctccatc
1620tacaccggaa ttaccctatc cgaatacttc cgtgacatgg gctacaacgt
gtccatgatg 1680gccgactcga cctcccgttg ggccgaagcg ctgcgtgaga
tctcgggtcg tctggccgag 1740atgcccgctg actctggtta ccccgcgtac
ttgggagcta gactggcgag cttctacgag 1800agggctggca gggtcaagtg
tctgggtaac ccggagaggg aaggttcggt ctccatcgtg 1860ggcgccgtgt
cgccgcccgg aggagacttc tctgaccccg tgacggcggc cacgctcggt
1920attgttcagg tgttctgggg gctggacaag aagctggcgc agaggaagca
cttcccctcc 1980atcaactggc ttatttctta cagtaagtac atgcgcgcgc
tggacgactt ctacgacaag 2040aactaccccg agttcgtgcc gctcaggacc
aagacagtta ctcgaactac gaccgtttct 2100gcccgttcta caagacgacc
ggcatgctga agaacatcat cacgttctac gacatgtcgc 2160gacacgccgt
cgagtccacc gcgcagtccg acaacaaggt gacgtggaac acgatccgtg
2220acgccatggg acccgtgctc taccagctgt ccagcatgaa gttcaaggac
cccgtgaaag 2280atggagaagc caagatcaag gctgacttcg accagatcgt
cgaggacatg gccgctgcct 2340tccgtaacct agaggactaa
2360112030DNAPlutella xylostella 11atgccgttga gattggatat caagaggaag
ctgacggctc gctcggaccg cgtgaagtgc 60gtggaccagc acccctcgga gccctggctg
ctatgctccc tgtacaatgg ggatgtcaac 120atatggaact acgagacaca
gctgcaaata aaaagatttg aggtaagtgt atgcgacttg 180ccagtccgtg
cggccaagtt tgtgccgagg aagttctggg tgatcaccgg ctccgatgac
240atgcaaattc gtgtcttcaa ctacaacaca ctggaacgtg tacacaattt
tgaagctcat 300tcagactatg tgaggtgtat tgcggttcac cccacccagc
catacatctt gaccagcagt 360gatgatcttc tgataaagct ttggaactgg
gatcgcaact ggacttgcca gcaagtgttc 420gagggacaca cgcactatgt
gatgcagatt gtcatcaacc ccaaagacaa caacactttt 480gccagtgcca
gtcttgacag aaccgtcaag gtatggcagc tgggctcttc catcccgaac
540ttcactctgg aaggtcacga gaagggagtc aactgcgtgg actactacca
cggcggggac 600aagccgtacc tcatcagtgg agctgatgac cgcctcgtca
agatatggga ctaccagaac 660aagacttgtg ttcagacctt ggaaggtcac
gcccagaatg tgtcagcagt gtccttccac 720cccgagctac cgatcctgct
gactggctca gaggacggca cggtgcgcat ctggcacgcc 780ggcacctacc
ggctcgagag ctcgctgaac tacggcttcg agcgagtctg gactatatcc
840tccatgcatg ggtccaataa tgtcgctgtt ggttacgacg aagggactat
aatgataaaa 900gtaggacggg aggagccggc tatttccatg gacgtcaacg
gcggcaaaat catctgggcc 960aaacactcag agatgcaaca agtcaacttg
aaagctttac cagaaggtac acacataaag 1020gatggcgaga ggctgccatt
ggtggtaaaa gacatgggtt cttgcgagat ctatccacag 1080acgatagccc
acaacccgaa cggcagattc gtggtagtct gcggagatgg ggaatacatc
1140atctacacag ccatggcttt gaggaataag gctttcggca atgcgcagga
gtttgtgtgg 1200acgtttgaca gctcggagta tgccacactg gagaactcca
gcactatcaa agtgttcaag 1260aacttcaagg agcggaagag cttcaaaccg
gagtatgggg ctgaaggaat atttggcggt 1320ttcatgctgg gcgtgaagtc
aatcagtggg gtttccttct ccatctacga ctgggaacat 1380ctggagctca
tcagacgcat cgagatccag ccccgccacg tgttctggtc ggagagcggc
1440agtctagtct gtctggcgac ggacgaaagc tactacattc tgcgctacaa
cgccgccgtc 1500gtcaccaagg cgcgcgagac taacaccaac atcacagagg
acggcattga ggatgccttt 1560gaggtggtcg gcgaagtgaa cgagacagta
aagacgggca tctggatcgg ggactgcttc 1620atctacacca actctctcaa
cagaataaac tactatgtcg gcggcgagat cgtcacgata 1680tcgcatctcg
atcacaccat gtacatactt ggatacgtag ctaaggaaaa cagactatac
1740ctgaacgaca aggagctcaa cgtggtctcc tattccctcc tgctgccggt
gctggagtac 1800cagacggcgg tcatgcgagg ggacttcgag acggcggaca
aggtgctgcc ggtcataccg 1860cacgagcacc ggacgagagt cgcgcacttc
ctcgagaaac agggcttcaa gcagcaagcg 1920ctagccgtgt ccacggagcc
ggaacaccag ttcgagctgg ccctagcttt aggcgagctc 1980cgaagagccc
gccaactagc cgaggaggcg acggcggctg gaggggctcc 2030123621DNAPlutella
xylostella 12atggggggcg tggagcaatc ctgttacact ctcatcaact tcccaaccga
tgcagagcca 60tacaatgaac tgcaactcaa gattgacttg gagagaggtg acatcaagaa
gaagattgag 120gctctaaaga aggtgattgg tatcatcctc tccggggaga
agatacctgg tatcctcatg 180gtcatcatca ggtttgtgct gccgctgcag
gaccatacca tcaagaagct gctactgatc 240ttctgggaga tcgtcccgaa
gaccaccccc gacggcaagc tgctgcagga gatgatcctc 300gtctgtgact
cgtacaggaa ggacctgcaa caccctaacg agttcatccg cggctccacc
360ctccggttcc tgtgcaagct gaaggagccc gagctgctgg agccgctgat
gccggcgatc 420agggcctgcc tcgagcaccg ccactcgtat gtgcggagga
acgccgtgct ggccatcttt 480accatctacc gactccggtt cctgtgcaag
ctgaaggagc ccgagctgct gaagccgctg 540atgccggcga tcagggcctg
cctcgagcac cggcactcgt atgtgcggag gaacgccgtg 600ctggctatat
ttaccatcta ccgaaacttc gacttcctca tcccggacgc tccggaactg
660atcggcaagt tcttagagac ggaacaggac atgtcgtgca agcggaacgc
tttcctgatg 720ttgctacatg ctgagcagga gcgtgcattg agctacctgg
ctgatagatt ggacagtgtg 780gcgggcttcg gggatatact gcaactggtc
attgtggagc ttatttataa ggtgtgccac 840gcgaacccgt ccgaacgctc
gcgcttcatc cgcacagtgt atgggctgct caacgcgccc 900agcgccgcgg
tccggtacga ggcggccggc acgctggtca cgctgtctac tgcgcctgcc
960gctattaagg cggcagcatc ctgctacatc gacctcatag tcaaagaatc
tgacaacaac 1020gtgaagctaa tcgttctctc ccgtctcgga gccctacgac
agggcgaggc ggcggcgcgc 1080gcgctgcccg cgctggctat ggacgtgctg
agggtgctgc aatcggctga tttggatgtc 1140cgtgctcagg ctttacaact
ggtgaagctg atagtgctct ctcggctcgg agccctacga 1200caaggcgagg
cggcggcgcg cgcgctgccc gccctcgcca tggacgtgct tagggtgctg
1260cagtctgcgg atttggatgt gcgtgctcag gccctacagt tagccctgga
cctcgtaacc 1320ccccggcacg cggacgagct agtacaagtg ctgcgcaagg
aggcggcgcg cgccaccagc 1380gccgacagcg accacgccgc ccagtaccgc
cagctgctgg tgcgcgcgct gcacaaggcc 1440gcgctgcagt tcccagaagt
ggccggcagc gtggcgcccg cgctgctgga gctgctcggg 1500gacggcagcg
agccggccgc gcccgacgtg ctgctgttca ctagagaggc cctgcagacc
1560ttcccggacc tccgggggca gatctaccag tgtcatatat gtctgtggtc
tggtactacc 1620gatggtggtc tggtggatct gtccggtgac tatatcacac
agggacagat ctgtccagta 1680ctagagccgg ccgcgcccga cgtgctgctg
ttcactagag aggctctaca gaccttcccg 1740gacctccgcg ggcagatcta
ccagcgtctc ctagactcga tcggcaactt caagggcaag 1800cgtctgctag
actcgatcgg caacatcaag gtgggcaagg tggcccgctc agctctgtgg
1860ctactcgccc agttcgcgga cacggaggcg cgcgccgagg ccgccctggc
tgccgtggcc 1920gcctgcgtgc ccactgtagg gggggagcag gagacggatg
attccgcagc gaagcaagaa 1980gcgacggcgg cgccgcggca gctggtcacc
agcgacggca cttacgcgtc gcagtccgcc 2040ttcaacctgc cctcgtccgc
gtccaccgcg tcaacatcca ccaacaacct ccgctcagcc 2100ctcacctcgg
gcgactcgtt cacggccgcc tgcgcctgct ccgcgctggc caagctgtcg
2160ctcaagcagg ccactgtgag ggacgccaac agggcgctgc acctcgctgc
taggctactg 2220gctcattata agattaatgc tggcaacggc acaaccctca
cagcggacga catagagcac 2280gcggctctct gcgccaggct cagctcgcga
cgccccaagg ctcttctagg agccgccatc 2340gatggtagtg gggaggcgct
taaagcactg ctgaaggaaa ctgcggctga tgatgtggct 2400gccaaggctc
tactaggagc cgccatcgac ggcagcggag aggcgcttaa agcactgctg
2460aaggaaactg ctgctgatga tgtggctgcc aagacagcgg ttatagtaga
gctagcaggt 2520ctatgtaagt ggctgagctc gcgacgcccc aaggctctac
taggagccgc catcgatggt 2580agtggggagg cgcttaaagc actgctgaag
gaaactgctg ctgatgacgt agctgctaag 2640gagcgcgaag cagcgtcagc
caagcgcaca gtggatgtag aagaaggcat cgtgttctcg 2700caactggcgg
gcgcgggcgc cgccaacacg caccacgaca tcttcgaggt gtcgctgtcc
2760aaggcactgg atggtcgttc cggccaaggc gaggacaaag gcaagctgtc
caaggtgacg 2820cagctgacag gcttctccga tccagtctac gcggaggcca
tcgtggccgt caaccagtac 2880gacatcgtgc tcgacgtgct ggtggttaac
cagaccgacg atacgctcca gaactgcaca 2940gtggagctag ccacgctcgg
agacctgcga ttggtcgagc ggcccgcgtc ggtggtgtta 3000gccccgcgag
actacgccac cataaaggca cacgtcaagg tggcgtccac ggagaatggg
3060atcatatttg ggaatattgt gtacgaagtg acgggcgcat ccatggaccg
aggagtcgtg 3120gttctaaacg acatccacat cgacatcgtg gactacatcc
agccggccgc gtgcagcgac 3180gccgacttcc gctccatgtg ggccgagttc
gagcgggaga acaagccggc cgcgggcagc 3240gacgccgact tccgctcaat
gtgggccgcg ttcgagtggg agaacaaggt ttccgtgaac 3300acaaacatca
cagacctgaa ggaatacctg cagcacctcc tcgcttctac caacatgaag
3360tgtctcacgc cagaaaaggc gctttccggt caatgcggct tcatggcggc
caacatgtac 3420gctagatcca tcttcggcga agacgctcta gccaacctga
gcattgagcg agcgctcaac 3480aagccggacg caccggtcgt gggtcacgtc
aggatacgag ctaagagcca gggtatggca 3540ttaagcctcg gcgacaagat
caacatgatg cagaaggccg cccacaagcc gtcggcctcc 3600ccgccgacgc
ccgccgcctg a 362113302RNAartificial sequencesynthetic construct
13gugccguuga gauuggauau caagaggaag cugacggcuc gcucggaccg cgugaagugc
60guggaccagc accccucgga gcccuggcug cuaugcuccc uguacaaugg ggaugucaac
120auauggaacu acgagacaca gcugcaaaua aaaagauuug agguaugcga
cuugccaguc 180cgugcggcca aguuugugcc gaggaaguuc ugggugauca
ccggcuccga ugacaugcaa 240auucgugucu ucaacuacaa cacacuggaa
cguguacaca auuuugaagc ucauucagac 300uc 30214298RNAartificial
sequencesynthetic construct 14ggcaaaacau ccguaagcug aucaaggaug
guuugaucau caaaaagccu guggcugucc 60acuccagagc ccgcguccgu aaaaacacag
aagccagacg gaagggucgu cauuguggcu 120ucgguaagag gaaggguacc
gccaacgcca gaaugccugu gaagguccug ugggucaaca 180gaaugagagu
ccugcgacgg cuccuuaaaa aauacagaga agccaagaag aucgauaggc
240aaauguacca cgaccuuuac augaaagcca aagguaacgu cuucaaaaac aagagggu
29815300RNAartificial sequencesynthetic construct 15ggugccuucg
gcuguggaaa aacugucauc ucacaagcuc uguccaaaua cucaaacucu 60gacgucauca
uuuacgucgg augcggugaa cgugguaacg aaauguuuga gguauugaga
120gauuuccccg aacucacagu ugagauugac gguguaacug aguccaucau
gaagcguacu 180gcucuggucg ccaacacauc caacaugccu guagcugcuc
gagaagcuuc cauuuauacu 240gguaucacau uguccgaaua cuuccgugac
auggguuaca acgugucgau gauggcugac 30016300RNAartificial
sequencesynthetic construct 16gacaucaaga gaaagcuguc ugcucgauca
gaccguguga aaugugucga ucugcaccca 60acugagcccu ggauguuggc uucucucuac
aacggaaacg uucacauuug gaaccacgaa 120acucaacagc uucugaaauc
cuucgaagua ugcgagcuuc caaucagggc ugcaguuuuc 180guaccgagga
agaacugggu ggucacaggc ucggacgaca ugcacguucg ugucuucaac
240uacaacacuc ucgagcgugu acauuccuuc gaggcccauu cugauuauuu
gagaugcauc 30017300RNAartificial sequencesynthetic construct
17ggaggagacu uguacgguau cguacacgag aacacauugg uuaagcauaa gauguugauc
60ccacccaagg ccaaggguac cgucaccuac aucgcgcccu ccggcaacua caaagucacu
120gacguagugu uggagacgga guucgacggc gagaaggaga aguacaccau
guugcaagua 180uggccggugc gccagccccg ccccgucacu gagaagcugc
ccgccaacca cccccugcuc 240accggacaga gagugcucga cucucucuuc
ccuugugucc agggugguac cacggccauc 30018301RNAartificial
sequencesynthetic construct 18ggaucauauc uaccagaaac uguuggaggc
ggugcccggu aucaaagugg uaagauagcg 60cggucugcgc uguggcugcu ggcccaguuc
gcugagacuc cggaacgcgc caaggaugcc 120uuggauguac ucgccaacgu
cauaccuucc cuuagcggac aagaggauaa ggaagaaucc 180gagucggcag
cuaaggccca ggacacuuca gcuccacgac agcuugucac cagugaugga
240acuuaugcuu cgcagucugc uuuuaacuug ccaguuagcc aagcggcucc
aacccacgcg 300c 30119301RNAartificial sequencesynthetic construct
19ggcguucucc uucuaugauu gggagaacuu ggaguugauc agacggauug agauccagcc
60gcggcacgug uacuggucgg agagcggcaa ccuggugugc cuggcggcug augacucgua
120cuacgugcuc aaguauaaug cagcuguugu gacgcgagcu cgcgaaacca
acuccaacau 180cacagaagac ggcaucgaag acgcuuuuga ggucgugggu
gcagugaacg aggugguaaa 240gacaggacua ugggugggcg acugcuucau
cuacacgaau uccuugaaca gaauaaacua 300c 30120302RNAartificial
sequencesynthetic construct 20gcguccaggg cggcaccacg gccauccccg
gggccuucgg uugcggcaag accgucaucu 60cgcaggcguu guccaaguac uccaacucug
acgucaucgu cuaugucggg uguggggagc 120gugguaacga gauguccgaa
guacugcgug acuuccccga gcugacaguc gagaucgacg 180gcgugaccga
guccaucaug aagcgcacgg cgcucguggc caacaccucc aacaugccag
240uggccgcccg agaggccucc aucuacaccg gaauuacccu auccgaauac
uuccgugaca 300uc 30221301RNAartificial sequencesynthetic construct
21ggccgcuaaa ggacaucaac gagcucacgc agagcaucua cauccccaag ggggugaacg
60ugcccgcgcu ggcccgcgac accgaguggc aguucaaccc gcaguacauc aaggucggca
120cccacaucac cggcggagac uuguacggga ucgugcacga gaacacgcug
gugaagcacc 180gcaugcuggu gccgcccaag gccaagggca ccgucaccua
caucgcgccc gaggggaacu 240acaaagucac ugacgugguc cuagagaccg
aguucgacgg cgagaagucc uccuacacca 300c 30122257RNAartificial
sequencesynthetic construct 22gcaucccccc agaucagcag agguugaucu
uugccggcaa gcaguuggaa gacggacgua 60cuuugucuga cuacaacauc caaaaagaau
ccacucucca ccuggucuug agauugagag 120guggcaugca gaucuucgug
aagacccuca caggaaagac caucacucuu gaggucgagc 180cuucugacac
caucgaaaac gucaaggcua aaauucaaga caaggaaggu auuccuccag
240aucagcagag auugauc 25723300RNAartificial sequencesynthetic
construct 23gcaggcacaa acagaaaaaa uuaaggaaaa uacagaaaag aucaaaguga
acaaaacuuu 60accauauuua guaucuaaug ugauagaguu gcuugauguu gauccagagg
aaacugagga 120agauggugcu guuguugacc uugaugcccg ucguaaagga
aaaugugcug ucauuaaaac 180aucaacgagg cagacuuauu uuuugccagu
aauaggcuua guugaugcug aaaaguuaaa 240gccaggugau cugguuggag
uaaacaaaga uucuuauuua auucuugaaa ccuugccugc 30024300RNAartificial
sequencesynthetic construct 24guugauuuuu gcagguaaac agcucgaaga
uggucguaca uugucugacu auaauauuca 60aaaggaaucu acucugcauu ugguccuucg
ucugagagga ggaaugcaaa uuuuuguaaa 120aaccuugacu gggaaaacua
uuacauuaga aguggaaccu ucugacacua uugaaaaugu 180uaaagcuaaa
auucaagaua aggaaggaau uccaccagau cagcagcgau ugaucuuugc
240uggaaaacag uuggaagaug gucguacuuu aucugauuau aacauucaga
aggaaucaac 30025302RNAartificial sequencesynthetic construct
25gacacuuacu gguaaaacaa ucacacuuga aguugagccu ucagacacaa uugaaaaugu
60gaaagcuaaa auucaagaua aagaaggaau uccuccagau cagcagaggu ugauuuuugc
120agguaaacag cucgaagaug gucguacauu gucugacuau aauauucaaa
aggaaucuac 180ucugcauuug guccuucguc ugagaggagg aaugcaaauu
uuuguaaaaa ccuugacugg 240gaaaacuauu acauuagaag uggaaccuuc
ugacacuauu gaaaauguua aagcuaaaau 300uc 30226302RNAartificial
sequencesynthetic construct 26gaccuugacu ggcaagacca ucacucuuga
ggucgagccc ucugacacca uugaaaacgu 60caaggccaag auccaggaca aggaagguau
ccccccagau cagcagaggu ugaucuucgc 120uggcaagcag cucgaggaug
gucguacccu cucggacuac aacauccaga aggaguccac 180ccuucaucuu
guccuccguc ugcguggugg uaugcagauu uucgucaaga ccuugacugg
240caagacgauc acuuuggaag ucgagcccuc ugacaccauu gagaauguca
aagccaaaau 300cc 30227300RNAartificial sequencesynthetic construct
27gagaagaacu cuucacugga guugguccca guucuuguug aauuagaugg cgauguuaau
60gggcaaaaau ucucugucag uggagagggu gaaggugaug caacauacgg aaaacuuacc
120cuuaauuuua uuugcacuac ugggaagcua ccuguuccau ggccaacacu
ugucacuacu 180uucucuuaug guguucaaug cuucucaaga uacccagauc
auaugaaaca gcaugacuuu 240uucaagagug ccaugcccga agguuaugua
caggaaagaa cuauauuuuu caaagaugac 30028302RNAartificial
sequencesynthetic construct 28ggcgugccua cuauaggggg ggagcaagag
cagacugagg auuccgcagc gaagcaggag 60gcgacggcgg cgccgcggca gcuggucacc
agcgacggga cuuacgccuc gcaguccgcc 120uucaaccugc ccucguccgc
cgccaccgca ucaacaucca ccaacgggcu ccgcucagcg 180cucaccucgg
gcgacucguu cacggccgcc ugcgccugcu ccgcgcuggc caagcugucg
240cucaagcagg ccacugugag ggacgccaac agggcgcugc accucgcugc
uaggcuacug 300gc 30229300RNAartificial sequencesynthetic construct
29gcaucuacau ccccaagggg gugaacgugc ccgcgcuggc ccgcgacacc gagugggagu
60uccacccgca guacaucaag gucggcaccc acaucaccgg cggagacuua uacgggaucg
120ugcacgagaa cacgcuggug aagcaccgca ugcuggugcc gcccaaggcc
aagggcaccg 180ucaccuacau cgcgcccgag gggaacuaca aagucacuga
cgugguccua gagaccgagu 240ucgacggcga gaaguccucc uacaccaugc
uucaagugug gccggugaga cagccgcggc 30030302RNAartificial
sequencesynthetic construct 30gugccguuga gauuggauau caagaggaag
cugacggcuc gcucggaccg cgugaagugc 60guggaccagc accccucgga gcccuggcug
cuaugcuccc uguacaaugg ggaugucaac 120auauggaacu acgagacaca
gcugcaaaua aaaagauuug agguaugcga cuugccaguc 180cgugcggcca
aguuugugcc gaggaaguuc ugggugauca ccggcuccga ugacauguaa
240auucgugucu ucaacuacaa cacacuggaa cguguacaca auuuugaagc
ucauucagac 300uc 30231300RNAartificial sequencesynthetic construct
31ggugccuucg gcuguggaaa aacugucauc ucacaagcuc uguccaaaua cucaaacucu
60gacgucauca uuuacgucgg augcggugaa cgugguaacg aaauguuuga gguauugaga
120gauuuccccg aacucacagu ugagauugac gguguaacug aguccaucau
gaagcguacu 180gcucuggucg ccaacacauc caacaugccu guugcugcuc
gagaagcuuc cauuuauacu 240gguaucacau uguccgaaua cuuccgugac
auggguuaca acgugucgau gauggcugac 30032300RNAartificial
sequencesynthetic construct 32gacaucaaga gaaagcuguc ugcucgauca
ggccguguga aaugugucga ucugcaccca 60acugagcccu ggauguuggc uucucucuac
aacggaaacg uucacauuug gaaccacgaa 120acucaacagc uucugaaauc
cuucgaagua ugcgagcuuc caaucagggc ugcaguuuuc 180guaccgagga
agaacugggu ggucacaggc ucggacgaca ugcacguucg ugucuucaac
240uacaacacuc ucgagcgugu acauuccuuc gaggcccauu cugauuauuu
gagaugcauc 30033300RNAartificial sequencesynthetic construct
33ggaggagacu uguacgguau cguacacgag aacacauugg uuaagcauaa gauguugauc
60ccacccaagg ccaaggguac cgucaccuac aucgcgcccu ccggcaacua caaagucacu
120gacguagugu uggagacggu guucgacggc gagaaggaga aguacaccau
guugcaagua 180uggccggugc gccagccccg ccccgucacu gagaagcugc
ccgccaacca cccccugcuc 240accggacaga gagugcucga cucucucuuc
ccuugugucc agggugguac cacggccauc 30034301RNAartificial
sequencesynthetic construct 34ggaucauauc uaccagaaac uguuggaggc
ggugcccggu aucaaagugg uaagauagcg 60cggucugcgc uguggcugcu ggcccaguuc
gcugagacuc cggaacgcgc caaggaugcc 120uuggauguac ucgccaacgu
cauaccuucc cuuagcggac aagaggauaa agaagaaucc 180gagucggcag
cuaaggccca ggacacuuca gcuccacgac agcuugucac cagugaugga
240acuuaugcuu cgcagucugc uuuuaacuug ccaguuagcc aagcggcucc
aacccacgcg 300c 30135302RNAartificial sequencesynthetic construct
35gcguccaggg cggcaccacg gccauccccg gggccuucgg uagcggcaag accgucaucu
60cgcaggcguu guccaaguuc uccaacucug acgucaucgu cuaugucggg uguggggagc
120gugauaacga gauguccgaa guacugcgug acuuccccga gcugacaguc
gagaucgacg 180gcgugaccga guccaacaug aagcgcacgg cgcucguggc
caacaccucc aacaugccag 240uggccgcccg agaggccucc aucuacaccg
gaauuacccu auccgaauac uuccgugaca 300uc 30236257RNAartificial
sequencesynthetic construct 36gcaucccccc agaucagcag agguuaaucu
uugccggcaa gcaguuggaa gacggacgua 60cuuugucuga uuacaacauc caaaaagaau
ccacucucca ccuggucuug agauugagag 120guggcaugca gaucuucaug
aagacccuca caggaaagac caucacucuu gaggucgagc 180cuucugacac
caucgaaaac gucaaggcua aaauucaagg caaggaaggu auuccuccag
240auuagcagag auugauc 25737300RNAartificial sequencesynthetic
construct 37gcaggcacaa acagaaaaaa uuaaggaaaa uacagaaaag aucaaaguga
acaaaacuuu 60accguauuua gaaucuaaug ugauagaguu gcuugauguu gauccagagg
aaacugagga 120agauggugcu auuguugacc uugaugcccg ucguaaagga
aaaugugcug ucauuaaaac 180aucaacgagg cagacuuauu uuuugccagu
aauaggcuua guugaugcug aaaaguuaaa 240gccaggugau cugguuggag
uaaacaaaga uucuuauuug auucuugaaa ccuugccugc 30038300RNAartificial
sequencesynthetic construct 38guugauuuuu gcagguaaac agcucgaaga
uggucguaca uugucugacu auaauauuca 60aauggaaucu acucugcauu ugguccuucg
ucugagagca ggaaugcaaa uauuuguaaa 120aaccuugacu gggaaaacua
uuacauuaga aguggaaccu ucugacacua uugaauaugu 180uaaagcuaaa
acucaggaua agguaggaau ucuaccagau caguagcgau ugaucuuugc
240uagaaaacag uuggaagaug gucauacuuu aucugauuau aacauucaga
uggaaucaac 30039302RNAartificial sequencesynthetic construct
39gacacuuacu gguaaaacaa ucacacuuga aguugagccu ucagacacaa uugaaaaugu
60gaaaguuaaa auucaagaua aaguaggaau uccuccaguu cagcagaggu ugauuuuugc
120agguaaacag cucgaagaug gucguacauu gucugacuau aauauucuaa
aggaaucuac 180ucugcauuug guccuucguc ugagaagagg aaugcaaauu
guuguaaaaa ccuugacugg 240gaaaacuauu acauuagaag uggaaccuuc
ugacacuauu gaaauuguua aagcuaaaau 300uc 30240302RNAartificial
sequencesynthetic construct 40gaccuugacu ggcaagacca ucacucuuga
ggucgagccc ucugacacca uugaaaacgu 60caaggccaag auccagaaca aggaagguau
ccccccagau cagcagaggu uggucuucgc 120uggcaagcag cucgaggaug
gucguacccu cucggacuac aacaucuaga aggaguccac 180ccuucaucuu
guccuccguc ugcguggugg caugcagauu uucgucaaga ccuugacugg
240caagacgauc acuuuggaag ucgagcccuc ugacaccauu gagaguguca
aagccaaaau 300cc 30241300RNAartificial sequencesynthetic construct
41gagaagaacu cuucacugga guugguccca guucuuguug aauuagaugg cgauguuaau
60gggcaaaaau ucucugucag uggugagggu gaaggugaug caacauacgg aaaacuuacc
120cuuaauuuua uuugcacuac ugggaagcua ccuguuccau ggccaacacu
ugucacuacu 180uucucuuaug guguucaaug cuucucaaga uacccagauc
auaugaaaca gcaugacuuu 240uucaagagug ccaugcccga agguuaugua
caggaaagaa cuauauuuuu caaagaugac 30042302RNAartificial
sequencesynthetic construct 42ggcgugccua cuauaggggg ggagcaagag
cagacugagg auuccgcagc gaagcaggag 60gcgacggcgg cgccgcggca gcuggucacc
agcgacggga cuuacgccuc gcaguccgcc 120uucaaccugc ccucguccgc
cgccaccgca ucaacaucca ccaacgggcu ccgcucagcg 180cucaccucgg
gcgacucguu cacggccgcc ugcgccugcu ccgcgcuggc aaagcugucg
240cucaagcagg ccacugugag ggacgccaac agggcgcugc accucgcugc
caggcuacug 300gc 302433005DNALygus hesperus 43agcacagctc agaaagttga
agctctcaag aaaacgattc acatgatttc caacggcgag 60cgtttaccgg gtcttctgat
gcatatcatc agattcattc tgccttccca ggaccacacg 120atcaaaaagt
tgctgctaat attctgggag atcgttccta aaacttaccc cgatggaaaa
180ctgcttcaag aaatgatact tgtttgcgac gcctacagaa aggatttaca
acaccccaat 240gagttcgtgc gcgggtcgac tttgagattc ctctgcaaat
tgaaggagcc agaacttctg 300gaaccgctga tgcctgccat tcggtcgtgc
ctcgagcaca gagtgtctta cgtccgcagg 360aacgctgtcc ttgccatttt
cacgatctac aagaatttcg aatttctaat ccctgatgct 420cccgaactca
ttgccaattt cctcgacgga gagcaagata tgtcttgcaa aaggaatgcc
480ttcttgatgc tcctccacgc tgaccaagac agagcactct cctatcttgc
ttcttgtctg 540gaccaagtca ccagctttgg tgacatcctc cagcttgtca
tcgttgaatt gatttacaag 600gtttgtcatg cgaatccctc agaacgttct
cggttcataa ggtgcatata caacctattg 660aattcaagca gccctgctgt
ccgatatgaa gctgctggta cgctgataac cctgtccaac 720gcacctactg
ccatcaaggc tgctgcatca tgctacattg atctaatcat caaggaaagc
780gataacaacg tcaaactgat cgtcctcgat cgcctggtcg ccctcaaaga
catcccgacg 840tacgaaagag tcttgcagga tctcgtcatg gacatcctcc
gcgtcttggc cagcccggat 900atggaagtca ggaagaaggc tttgaatctc
gctcttgatc ttacaacttc gcgttgtgtc 960gaagaagtag ttttgatgct
gaagaaagag gttgccaaaa ctcataactt gtccgagcac 1020gaggaaacag
gaaaatatag gcaactcctt gtgagaactc tgcactcttg cagtatgaaa
1080ttccctgatg tggctgcttc cgtcatccca gtgctcatgg aatttttgtc
tgactccaac 1140gagctcgctt cccaagacgt ccttattttc gtaagggaag
ccattcacaa atttgaaaat 1200ctgaggaaca caatcattga gaaattgctt
gaagcttttc cgtccataaa gttcgtcaaa 1260gtccatcgtg ctgcgttgtg
gatattagga gagtacgctg cttccatcga tgacgtcaga 1320gctgtcatga
aacaaatcaa acagaatttg ggtgaggttc ctatggtgga agatgaaatg
1380aagcgggccg ctggagagaa gacagaagag tcatctgaac agaacagcgg
gggtgcaatg 1440ccgtcaagcg cttccaaact agtaacgtct gatgggacct
atgcttctca gtctgtgttc 1500agcactgtat ccacatccaa aaaagaggac
cgaccacctt tgaggcagta tctgattgat 1560ggtgattatt ttattggctc
caccatcgcg tccactttgg tgaaactttc tctgaagttt 1620gacaacttgg
aatccaacac ggctgcgcag aacgaattct gcaatgaatg catgctgatc
1680atcgcctgca ccctccatct tggaagatct ggcctttgca caaagaattt
gaataacgac 1740gacgctgaga ggatgctgtt ttgtcttcga gttctttggg
atggaagccc aaccattgag 1800aagattttta ctcaagaatg ccgagaagct
cttgcgtcta tgcttaccgc tcaacaccat 1860gaggaaatcg ccttgaataa
ggccaaagaa aagaccgcac atctcatcca cgtagacgac 1920ccagtctcat
tcctgcaatt atcatctctg agaaactctg aacttggttc tgaaaacgtg
1980ttcgagctaa gtcttactca ggcgcttggt ggtcccacca gtggtggctc
ctccaactcg 2040gacctcttct tctctgccag caagctcaac aaagtcacgc
agcttactgg cttttctgac 2100cctgtctacg ctgaagctta cgtccaagtc
aaccagtatg atatcgtctt ggacgtactc 2160attgtcaacc agacagctga
cactcttcaa aattgcactc tggaattggc tacacttggc 2220gacctgaaat
tggtcgagaa gccgcaaccc tgcgttttgg cgcctcatga cttctgtaac
2280ataaaagcta acgtcaaagt ggcttccact gaaaacggaa ttatttttgg
caacattgtt 2340tacgacgtta gtggagcagc ttccgaccga aacgtcgtcg
tcctcaatga cattcacatc 2400gatattatgg actacatagt tcctgcatct
tgttctgaca ctgaattccg ccaaatgtgg 2460gctgaattcg aatgggaaaa
caaggtatct gtcaacacca acctcacgga cttgcacgag 2520tatttggccc
atttggtcag gagcaccaac atgaagtgct tgacaccaga gaaagcgctc
2580tgcggtcaat gtgggttcat ggctgccaac atgtatgcgc gctcgatttt
cggagaagat 2640gcgttggcga acctgagcat cgagaaaccc ttcaacaagc
ctgatgcacc tgtcactgga 2700cacatccgca tccgagccaa aagccaggga
atggcactca gtctgggaga caaaatcaac 2760atgacccaga agagaccgca
gaaaatgtac ggtgcctaag ccctcataga tcccaccacc 2820tcggttcaac
tctccatctc ctttgtgaga gcaccctact gcttacctgc gccacactgc
2880aagtaaactt ggcttcggcc tcctatttat catattttac ggtattcttt
gttatcgaaa 2940tatttatgca tattatatta ttggtatttc gttatcccaa
ttcattcaat aaatatatag 3000attaa 3005441623DNALygus hesperus
44gccattagag cttcagacga gaaacgagaa cgagctacgt tgagcatcaa gagcttttgt
60actattgaaa ttgtgaaaaa tgcagatctt cgttaaaact ttgactggga agaccatcac
120cctcgaggtc gagccttctg ataccattga aaacgtgaag gcgaaaattc
aggataaaga 180aggcatcccc ccagatcagc agaggttgat ctttgccggc
aagcagttgg aagacggacg 240tactttgtct gactacaaca tccaaaaaga
atccactctc cacctggtct tgagattgag
300aggtggcatg cagatcttcg tgaagaccct cacaggaaag accatcactc
ttgaggtcga 360gccttctgac accatcgaaa acgtcaaggc taaaattcaa
gacaaggaag gtattcctcc 420agatcagcag agattgatct tcgccggcaa
acaactcgaa gatggccgta ccctctctga 480ctacaatatt caaaaagagt
ccacccttca cttggtgttg agattgcgtg gaggtatgca 540aatctttgtc
aaaacattga ctggaaagac catcaccctt gaagtcgaac cctccgacac
600catcgaaaat gtcaaggcca agatccagga caaggaaggc atccccccag
atcagcagag 660gttgattttc gctggcaaac aacttgaaga cggacgtacc
ctctcggact acaacatcca 720gaaggagtcg accctccatc ttgtcctccg
tctgcgtggt ggtatgcaga tttttgtcaa 780aactctgact ggcaagacaa
tcacccttga agtagagccc tctgacacca tcgaaaatgt 840caaggcgaaa
atccaggaca aagaaggcat ccccccagat cagcagaggt tgatctttgc
900cggtaagcag cttgaagacg gccgcaccct ctcggactac aacatccaga
aggagtccac 960ccttcatctt gtcctccgtc tgcgtggtgg tatgcagatc
ttcgtcaaga ccttgactgg 1020caagacgatc actttggaag tcgagccctc
tgacaccatt gagaatgtca aagccaaaat 1080ccaagataag gaaggcatcc
ccccagatca gcagaggttg atcttcgctg gtaagcaact 1140tgaagacggc
cgcaccctct ctgactacaa catccagaag gagtcgaccc tccatcttgt
1200cctccgtctg cgtggtggta tgcagatctt cgtcaagacc ttgacaggca
agaccatcac 1260ccttgaagtc gagccctctg acaccatcga aaacgtcaag
gctaagatcc aggacaagga 1320aggtatcccc ccagatcagc aaagattgat
cttcgccggc aaacagctcg aagatggccg 1380taccctctca gactacaaca
ttcaaaagga gtcaactctt catctcgttc tgaggctccg 1440tggcggtcgt
tattgatcac aattccaaac ttaaaaattg cattccgatt ttccttcttt
1500atttggcaaa aaatacatac cctagttaat taaaatgact tgaaatttga
ttttttaaga 1560atgcttcaaa tttttttata gatggtttgt tacatagaca
atacacaaca tgttgaaagc 1620aat 162345301RNAartificial
sequencesynthetic construct 45guugcugcua auauucuggg agaucguucc
uaaaacuuac cccgauggaa aacugcuuca 60agaaaugaua cuuguuugcg acgccuacag
aaaggauuua caacacccca augaguucgu 120gcgcgggucg acuuugagau
uccucugcaa auugaaggag ccagaacuuc uggaaccgcu 180gaugccugcc
auucggucgu gccucgagca cagagugucu uacguccgca ggaacgcugu
240ccuugccauu uucacgaucu acaagaauuu cgaauuucua aucccugaug
cucccgaacu 300c 30146255RNAartificial sequencesynthetic construct
46gacguacuuu gucugacuac aacauccaaa aagaauccac ucuccaccug gucuugagau
60ugagaggugg caugcagauc uucgugaaga cccucacagg aaagaccauc acucuugagg
120ucgagccuuc ugacaccauc gaaaacguca aggcuaaaau ucaagacaag
gaagguauuc 180cuccagauca gcagagauug aucuucgccg gcaaacaacu
cgaagauggc cguacccucu 240cugacuacaa uauuc 25547701DNALygus hesperus
47aagttttctc ttttgtaatt tttttgtaga tttttgtaca aaatacgttt tttgtttaaa
60atttaaaaac ggagggggcg agatcacttt ttgacggcag cctcgtcttc tcgggcgtac
120gcctgcatga tctcttgctt cttggtggcg atcctctcct cgcgcctctt
cttcgcctcc 180ttgaccttga gacgtctcgc ctctgcctgg tccttcaaca
tctttgatct cgccttttca 240gccttcttct tgtgaatgaa gtccatcagt
accctcttgt ttttgaagac gttacctttg 300gctttcatgt aaaggtcgtg
gtacatttgc ctatcgatct tcttggcttc tctgtatttt 360ttaaggagcc
gtcgcaggac tctcattctg ttgacccaca ggaccttcac aggcattctg
420gcgttggcgg tacccttcct cttaccgaag ccacagtgac gacccttccg
tctggcttct 480gtgtttttac ggacgcgggc tctggagtgg acagccacag
gctttttgat gatcaaacca 540tccttgatca gcttacggat gttttgccta
gagttggtgt tggcgatttc gttgatttca 600ttagggtcca accacacttt
cttcttgccg catctcatca ccgaggcggc gagcctcttc 660tgcagtttga
gcgaactcat ggtcggacga agagaaccac c 701481927DNAEuschistus heros
48aacaaacata acatgatatt attaaatgtt tcccaaattt ataaatatac aaataatata
60aagaatcact gaaaaaaaat tttgcaacag gaagtttaat ctcctttcaa tttaatccaa
120aaaatattaa atgcaatgaa aaaataaatt aaaaaacaaa tttgagatta
gaatatattc 180aataaactgt gaaccaacaa ataattaatt ttgaaaatga
ttataaaaat aaaaattaaa 240tattaaatct ggcagaaact catttcaaac
tagtaatcaa attagtcaaa ctaataattg 300atacagaaaa tataatcttt
ttaaaattaa acaggcaaaa atatatatat atatatgaat 360taacaaaact
tttttaactg gagttaatgc gactttaaga atttaataaa attataatgt
420gctattttac ttgttggttt acttacacat ttgtttttca aagagtggca
tatttacaag 480ttaataacaa tacaaaatca atcacagtta ttggcactcc
cgaaaagaag aatgcaagtg 540agtttctgca ttattaaaaa aatctttatc
aatagatatt taagcataat agtttaagtt 600ggctttcttc tttgcctgca
cttctaatat tgcatccatg aaatcttcat gagtgacaac 660tccagctcct
cttcgcaatg ctatcatacc tgcttccaca caaaccgctt tgcattgagc
720tccattgaaa tcatcagttg aacgagcaag ttcttcaaaa ttaacatcaa
cactaatatt 780catcttacga gaatgaattt gcattatacg tgctcgggca
tcttcgttag gatgtgggaa 840ttcaattttt ctgtctagtc gacctgaacg
caaaagggcg ggatccaaaa tatctactct 900atttgtagct gcaataacct
taatatcagc tgttgagcta aatccatcta actggttgag 960cagttctaac
atagttcttt gaacttctcg atcaccagct ttttcagaat caaatctttt
1020tgttccaata gcatccaact cgtcaataaa gataatagca ggagattttt
ccttagcaag 1080agcaaaagca tctctgacaa gtttggctcc atctcctata
aacatctgaa caagttgggg 1140tccagctagt ttcaaaaaag ttgatttagt
ttgagctgca cacgctctag ccagtaaagt 1200ctttcctgtt ccaggaggtc
catagagcaa tacaccttta ggaggatgaa ttcctagatt 1260ttcaaatttt
tctttgtgtg tcataggaag aacaacggct tctattaatt cttgaatctg
1320cttatcaagc ccaccgatat cagaatactg ctcagtaggt ctttcatcaa
cttccattgc 1380tttaactcgt gcatcatact cagcaggcaa ggtttcaaga
attaaataag aatctttgtt 1440tactccaacc agatcacctg gctttaactt
ttcagcatca actaagccta ttactggcaa 1500aaaataagtc tgcctcgttg
atgttttaat gacagcacat tttcctttac gacgggcatc 1560aaggtcaaca
acagcaccat cttcctcagt ttcctctgga tcaacatcaa gcaactctat
1620cacattagat actaaatatg gtaaagtttt gttcactttg atcttttctg
tattttcctt 1680aattttttct gtttgtgcct gcaactcatg actgactcgc
atgacttcac ttttcatgat 1740tttaatttca ttatcaagaa gcctaatacg
actgacaatt tcatccgtag acattctcat 1800gatttcttca cctaaagctt
gctccattct ttcgtcccac aagggctttt cttctgtttt 1860ggaagtagac
atctgaattg ccgaacttag gatgtgaacc aaattaaaac ctgtaactac 1920aacaaac
1927492170DNAEuschistus heros 49ttttttgaac ttaaagaaac tgtttatttc
tagtttagtt acattgtatt tatgaaataa 60ttataaatat aataatgaaa atgctaataa
aaatatcaaa agcaatttac tgatatggaa 120ttttgatgga atgaaatgat
aagtagcctt aatatccgcc cctaagacgc aacactaaat 180gcagagttga
ttccttctgg atgttataat cagatagggt acgaccatcc tctaattgtt
240ttccagcaaa aataagcctc tgctgatctg gaggtattcc ttctttgtcc
tgaattttgg 300ctttaacatt ttcaatagtg tcagatggct caacttctaa
ggtaatagtc ttgcctgtga 360gggtcttgac aaagatctgc ataccacctc
tcaatcgaag gaccagatgt agtgtagatt 420ccttctggat attataatct
gaaagggtac ggccatcttc gagttgtttt ccagcaaaga 480tcaaacgctg
ctggtcggga ggaattcctt ctttatcctg aattttagct tttacattct
540caattgtatc agatggctct acttccaagg taatggtttt acctgtcaaa
gtcttcacaa 600agatctgcat gcctcctctt agacgaagca ccaaatgcag
tgttgattcc ttttgaatgt 660tgtaatcaga caaagttcgg ccatcttcca
gctgctttcc agcaaaaata agcctctgtt 720ggtctggtgg tattccttct
ttatcttgaa ttttggcttt aacattctca atagtatctg 780aaggctcaac
ttccaaggtt atggtcttac cagttagagt ctttacaaaa atctgcatgc
840cacctctcaa gcgaagtaca agatgaagag tagactcttt ttgaatatta
taatctgaaa 900gggtacggcc atcttcaagt tgttttccag caaagatcaa
acgttgctgg tctggtggaa 960ttccttcttt gtcctggatt tttgctttta
cgttctcaat agtatcagat ggttcaactt 1020ctaaggtgat ggtcttccct
gttaaagtct tgacaaagat ctgcatgcct cctcgaagtc 1080taagtacaag
atgtaaagta gattcctttt ggatgttgta atcagaaaga gtacgcccat
1140cttctaactg ttttcctgca aagatcagcc tttgctgatc tggcggaatt
ccttccttat 1200cttgaatttt ggcttttaca ttttcaatgg tatctgacgg
ttcaacttct aaagttatgg 1260tttttccagt aagcgtctta acaaaaatct
gcattccacc tcttaaacgt aatactaaat 1320gtagtgttga ttccttctga
atgttataat cagataaagt acgaccatct tccaactgtt 1380ttccagcaaa
gatcaatcgc tgctgatctg gtggaattcc ttccttatct tgaattttag
1440ctttaacatt ttcaatagtg tcagaaggtt ccacttctaa tgtaatagtt
ttcccagtca 1500aggtttttac aaaaatttgc attcctcctc tcagacgaag
gaccaaatgc agagtagatt 1560ccttttgaat attatagtca gacaatgtac
gaccatcttc gagctgttta cctgcaaaaa 1620tcaacctctg ctgatctgga
ggaattcctt ctttatcttg aattttagct ttcacatttt 1680caattgtgtc
tgaaggctca acttcaagtg tgattgtttt accagtaagt gtcttgacaa
1740agatctgcat gcctcctctt aaacgtagga caagatgaag agtagattcc
ttttgaatat 1800tatagtcaga caatgtacga ccatcttcga gctgtttacc
tgcaaaaatc aacctctgtt 1860ggtctggagg aattccttct ttatcttgaa
ttttagcttt aacattttca attgtatcag 1920atggctccac ttccaaggtg
atggttttac cagtcaaggt cttcacaaaa atttgcatgc 1980ctcctctcaa
ccgaagtact aaatgtaaag tagattcttt ttgaatattg taatctgaaa
2040gagtacggcc atcttcaagc tgtttaccag caaaaataca acctctgttg
gtctggaggg 2100attccttctt tgtcttggat tttggccttg acattttcta
ttgtgtcaga aggctcaact 2160tctaatgtaa 2170
* * * * *
References