U.S. patent application number 16/289798 was filed with the patent office on 2021-06-24 for dual antigen-induced bipartite functional complementation.
This patent application is currently assigned to JULIUS-MAXIMILIANS-UNIVERSITAT WURZBURG. The applicant listed for this patent is JULIUS-MAXIMILIANS-UNIVERSITAT WURZBURG. Invention is credited to Gernot STUHLER.
Application Number | 20210188997 16/289798 |
Document ID | / |
Family ID | 1000005636426 |
Filed Date | 2021-06-24 |
United States Patent
Application |
20210188997 |
Kind Code |
A9 |
STUHLER; Gernot |
June 24, 2021 |
DUAL ANTIGEN-INDUCED BIPARTITE FUNCTIONAL COMPLEMENTATION
Abstract
The present invention relates to a set of polypeptides and its
uses. In particular, the present invention relates to a set of
polypeptides whereby this set comprises two polypeptides each of
which comprises a targeting moiety "T" binding to an antigen
".LAMBDA." and a fragment of "F" of a functional domain, wherein
said two polypeptides are not associated with each other in absence
of a substrate that has "A" at (on) its surface and wherein, upon
dimerization of "F", the resulting dimer becomes functional.
Furthermore, medical and diagnostic uses of said set are described.
Moreover, the present invention relates to nucleic acid molecule(s)
encoding said set of polypeptides. The present invention also
relates to a vector comprising the nucleotide sequence of nucleic
acid molecule(s) encoding said set of polypeptides. Furthermore,
the present invention relates to pharmaceutical compositions
comprising said set of polypeptides. Moreover, the present
invention relates to a kit comprising said set of polypeptides.
Inventors: |
STUHLER; Gernot; (Tubingen,
DE) |
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Applicant: |
Name |
City |
State |
Country |
Type |
JULIUS-MAXIMILIANS-UNIVERSITAT WURZBURG |
WURZBURG |
|
DE |
|
|
Assignee: |
JULIUS-MAXIMILIANS-UNIVERSITAT
WURZBURG
WURZBURG
DE
|
Prior
Publication: |
|
Document Identifier |
Publication Date |
|
US 20190284296 A1 |
September 19, 2019 |
|
|
Family ID: |
1000005636426 |
Appl. No.: |
16/289798 |
Filed: |
March 1, 2019 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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14371910 |
Jul 11, 2014 |
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PCT/EP2013/050603 |
Jan 14, 2013 |
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16289798 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C07K 16/468 20130101;
C07K 16/289 20130101; C07K 16/3061 20130101; G01N 33/574 20130101;
A61K 2039/505 20130101; C07K 16/30 20130101; C07K 16/2833
20130101 |
International
Class: |
C07K 16/30 20060101
C07K016/30; C07K 16/28 20060101 C07K016/28; G01N 33/574 20060101
G01N033/574; C07K 16/46 20060101 C07K016/46 |
Foreign Application Data
Date |
Code |
Application Number |
Jan 13, 2012 |
EP |
12151125.7 |
Claims
1. A method of treatment by dual antigen-induced bipartite
functional complementation, said method comprising a step of
administering to a subject in need thereof a pharmaceutically
effective amount of a set of polypeptides comprising: a first
polypeptide P1 comprising (i) a targeting moiety T1, wherein said
targeting moiety T1 specifically binds to an antigen A1, and (ii) a
fragment F1 of a functional domain F, wherein neither said fragment
F1 by itself nor said polypeptide P1 by itself is functional with
respect to the function of said functional domain F, and a second
polypeptide P2 comprising (i) a targeting moiety T2, wherein said
targeting moiety T2 specifically binds to an antigen A2, and (ii) a
fragment F2 of said functional domain F, wherein neither said
fragment F2 by itself nor said polypeptide P2 by itself is
functional with respect to the function of said functional domain
F, wherein said antigen A1 is different from said antigen A2,
wherein said polypeptide P1 and said polypeptide P2 are not
associated with each other in the absence of a cell that carries
both antigens A1 and A2 at its surface, wherein, upon dimerization
of said fragment F1 of said polypeptide P1 with said fragment F2 of
said polypeptide P2, the resulting dimer is functional with respect
to the function of said functional domain F, wherein said fragment
F1 comprises a V.sub.L domain of an antibody and said fragment F2
comprises a V.sub.H domain of the same antibody; or wherein said
fragment F1 comprises a V.sub.H domain of an antibody and said
fragment F2 comprises a V.sub.L domain of the same antibody,
wherein said targeting moiety T1 comprises an immunoglobulin
module, an aptamer, or a natural ligand of said antigen A1, wherein
said targeting moiety T2 comprises an immunoglobulin module, an
aptamer, or a natural ligand of said antigen A2, and, wherein said
functional domain F specifically binds or is capable of
specifically binding to an antigen, wherein said antigen is
different from antigen A1 and antigen A2.
2.-46. (canceled)
47. The method according to claim 1, wherein said polypeptide P1
and said polypeptide P2 are not associated with each other in the
absence of said cell that carries both antigens A1 and A2 at its
surface.
48. The method according to claim 1, wherein said cell that carries
both antigens A1 and A2 at its surface induces dimerization of the
fragment F1 of said polypeptide P1 with the fragment F2 of said
polypeptide P2, whereas a cell which does not carry both antigens
A1 and A2 at its cell surface does not induce dimerization of the
fragment F1 of said polypeptide P1 with the fragment F2 of said
polypeptide P2.
49. The method according to claim 1, wherein said polypeptides P1
and P2 have, in the absence of said cell that carries both antigens
A1 and A2 at its surface, a dissociation constant K.sub.D with each
other in the range of 10.sup.-8 M to 10.sup.-2 M, in the range of
10.sup.-7 M to 10.sup.-3M, or in the range of 10.sup.-6 M to
10.sup.-3 M; and/or wherein said polypeptides P1 and P2 have, in
the presence of said cell that carries both antigens A1 and A2 at
its surface, a dissociation constant K.sub.D with each other below
10.sup.-6 M, below 10.sup.-7 M, below 10.sup.-8M, or below
10.sup.-9 M.
50. The method according to claim 1, wherein said antigen A1 and
said antigen A2 are expressed on the surface of cells of a tumour
or on the surface of progenitor/precursor cells of a tumour.
51. The method according to claim 1, wherein said antigen A1 and
said antigen A2 are only found on cancerous cells, and are not
found on cells that are not cancerous.
52. The method according to claim 51, wherein said antigen A1 and
said antigen A2 are only found on cancerous cells of a certain type
of cancer.
53. The method according to claim 1, wherein said antigen A1 is an
MHC antigen being an allelic variant selected from the group
consisting of: HLA-A2, HLA-Cw6, HLA-A1, HLA-A3, HLA-A25, HLA-B7,
HLA-B8, HLA-B35, HLA-B44, HLA-Cw3, HLA-Cw4, and HLA-Cw7; and/or
wherein said antigen A2 is an antigen that is specific for a
certain cell type or cell lineage selected from the group
consisting of: CD45; CD34; CD33; CD138; CD15; CD1a; CD2; CD3; CD4;
CD5; CD8; CD20; CD23; CD31; CD43; CD56; CD57; CD68; CD79a; CD146;
surfactant proteins; synaptophysin; CD56; CD57; nicotinic
acetylcholine receptor; muscle-specific kinase MUSK; voltage-gated
calcium channel (P/Q-type); voltage-gated potassium channel (VGKC);
N-methyl-D-aspartate receptor (NMDA); TSH; amphiphysin; HepPar-1;
ganglioside GQ1B, GD3 or GM1; and glycophorin-A.
54. The method according to claim 1, wherein any of said antigens
A1 and A2 is selected from the group consisting of: HLA-A2;
HLA-Cw6; EpCAM; CD20; CD33; CD38; CD45; Her2; EGFR; CD138; CEA;
CD19; PSMA; E-cadherin; Ca-125; Her-2/neu; gross cystic disease
fluid protein; BCA-225; CA 19-9; CD117; CD30; Epithelial antigen
BER-EP4, Epithelial membrane antigen and Epithelial Related Antigen
MOC-31; Epidermal growth factor receptor HER1; Platelet derived
growth factor receptor PDGFR alpha; Melanoma associated marker/Mart
1/Melan-A; CD133; TAG 72; aquaporin-2; and a clonotypic antibody on
the surface of a B cell.
55. The method according to claim 1, wherein (i) one of said
antigens A1 and A2 is EpCAM and the other one of said antigens A1
and A2 is EGFR, HER2/neu, CD10, VEGF-R or MDR; (ii) one of said
antigens A1 and A2 is MCSP and the other one of said antigens A1
and A2 is melanoferrin or EpCAM; (iii) one of said antigens A1 and
A2 is CA125 and the other one of said antigens A1 and A2 is CD227;
(iv) one of said antigens A1 and A2 is CD56 and the other one of
said antigens A1 and A2 is CD140b or GD3 ganglioside; (v) one of
said antigens A1 and A2 is EGFR and the other one of said antigens
A1 and A2 is HER2; (vi) one of said antigens A1 and A2 is PSMA and
the other one of said antigens A1 and A2 is HER2; (vii) one of said
antigens A1 and A2 is Sialyl Lewis and the other one of said
antigens A1 and A2 is EGFR; (viii) one of said antigens A1 and A2
is CD44 and the other one of said antigens A1 and A2 is ESA, CD24,
CD133, MDR or CD117; (ix) one of said antigens A1 and A2 is CD34
and the other one of said antigens A1 and A2 is CD19, CD79a, CD2,
CD7, HLA-DR, CD13, CD117, CD33 or CD15; (x) one of said antigens A1
and A2 is CD33 and the other one of said antigens A1 and A2 is
CD19, CD79a, CD2, CD7, HLA-DR, CD13, CD117 or CD15; (xi) one of
said antigens A1 and A2 is MUC1 and the other one of said antigens
A1 and A2 is CD10, CEA or CD57; (xii) one of said antigens A1 and
A2 is CD38 and the other one of said antigens A1 and A2 is CD138;
(xiii) one of said antigens A1 and A2 is CD24 and the other one of
said antigens A1 and A2 is CD29 or CD49f; (xiv) one of said
antigens A1 and A2 is carbonic anhydrase IX and the other one of
said antigens A1 and A2 is aquaporin-2; (xv) one of said antigens
A1 and A2 is HLA-A2 and the other one of said antigens A1 and A2 is
EpCAM; (xvi) one of said antigens A1 and A2 is HLA-A2 and the other
one of said antigens A1 and A2 is CD45; (xvii) one of said antigens
A1 and A2 is HLA-A2 and the other one of said antigens A1 and A2 is
EGFR; (xviii) one of said antigens A1 and A2 is HLA-A2 and the
other one of said antigens A1 and A2 is Her2; (xix) one of said
antigens A1 and A2 is HLA-A2 and the other one of said antigens A1
and A2 is CEA; (xx) one of said antigens A1 and A2 is EpCAM and the
other one of said antigens A1 and A2 is CEA; (xxi) one of said
antigens A1 and A2 is CD45 and the other one of said antigens A1
and A2 is CD138; (xxii) one of said antigens A1 and A2 is EGFR and
the other one of said antigens A1 and A2 is CEA; (xxiii) one of
said antigens A1 and A2 is Her2 and the other one of said antigens
A1 and A2 is CEA; or (xxiv) one of said antigens A1 and A2 is CD19
and the other one of said antigens A1 and A2 is a clonotypic
antibody on the surface of a B cell.
56. The method according to claim 1, wherein said targeting moiety
T1 comprises an immunoglobulin module I1 comprising a V.sub.L
domain linked to a V.sub.H domain or comprising a variable domain
V.sub.HH of a llama antibody, camel antibody, or shark antibody;
and/or wherein said targeting moiety T2 comprises an immunoglobulin
module I2 comprising a V.sub.L domain linked to a V.sub.H domain or
comprising a variable domain V.sub.HH of a llama antibody, camel
antibody, or shark antibody.
57. The method according to claim 56, wherein said immunoglobulin
module I1 comprises a single-chain variant fragment (scFv), a Fab,
or a F(ab').sub.2 of an antibody or a complete antibody; and/or
wherein said immunoglobulin module I2 comprises an scFv, a Fab, or
a F(ab').sub.2 of an antibody or a complete antibody.
58. The method according to claim 1, wherein any one of said
targeting moiety T1 and T2 comprises an allergen or substrate which
binds to a clonotypic antibody on the surface of a B cell.
59. The method according to claim 1, wherein said functional domain
F is or comprises an immunoglobulin module.
60. The method according to claim 59, wherein said functional
domain F is or comprises a variant fragment (Fv) of an
antibody.
61. The method according to claim 1, wherein said fragment F1
comprises a V.sub.L domain of an anti-CD3, anti-His, or anti-DIG
antibody and said fragment F2 comprises a V.sub.H domain of the
same antibody, or wherein said fragment F1 comprises a V.sub.H
domain of an anti-CD3 anti-His or anti-DIG antibody and said
fragment F2 comprises a V.sub.L domain of the same antibody.
62. The method according to claim 61, wherein said immunoglobulin
module comprises a V domain selected from the group consisting of:
(i) a V domain of an anti-CD3 antibody comprising a V.sub.L domain
comprising SEQ ID NO: 2 and/or a V.sub.H domain comprising SEQ ID
NO: 1; (ii) a V domain of an anti-CD3 antibody comprising a V.sub.L
domain comprising SEQ ID NO: 4 and/or a V.sub.H domain comprising
SEQ ID NO: 3; (iii) a V domain of an anti-CD3 antibody comprising a
V.sub.L domain comprising SEQ ID NO: 6 and/or a V.sub.H domain
comprising SEQ ID NO: 5; (iv) a V domain of an anti-CD3 antibody
comprising a V.sub.L domain comprising SEQ ID NO: 8 and/or a
V.sub.H domain comprising SEQ ID NO: 7; (v) a V domain of an
anti-CD3 antibody comprising a V.sub.L domain comprising SEQ ID NO:
10 and/or a V.sub.H domain comprising SEQ ID NO: 9; (vi) a V domain
of an anti-His antibody comprising a V.sub.L domain comprising SEQ
ID NO: 12 and/or a V.sub.H domain comprising SEQ ID NO: 11; and
(vii) a V domain of an anti-DIG antibody comprising a V.sub.L
domain comprising SEQ ID NO: 14 and/or a V.sub.H domain comprising
SEQ ID NO: 30.
63. The method according to claim 1, wherein any of the
polypeptides P1 and P2 is or comprises an amino acid sequence
selected from the group consisting of SEQ ID NOs: 114-129 and
197.
64. The method of claim 1, wherein the method comprises treating a
patient who is suffering from cancer and/or a tumour.
65. The method of claim 1, wherein said antigen specifically bound
by said functional domain F is present on cells of the human immune
system.
66. The method of claim 1, wherein said binding of said functional
domain F to said antigen activates cells of the human immune
system.
67. The method of claim 1, wherein said functional domain F
comprises a T cell engaging domain.
68. The method of claim 1, wherein said functional domain F
comprises a T cell engaging domain specifically binding to CD2,
CD3, CD5, a T cell receptor, or CD28; a T cell engaging domain
specifically binding to CD3.sub..epsilon.; an NK cell (natural
killer cell) engaging domain; a domain engaging macrophage cells; a
monocyte-engaging domain; a granulocyte-engaging domain; a domain
engaging neutrophil granulocytes; or a domain engaging activated
neutrophil granulocytes, monocytes and/or macrophages.
69. The method of claim 1, wherein said polypeptide P1 and said
polypeptide P2 have, in the absence of said cell that carries both
antigens A1 and A2 at its surface, a dissociation constant K.sub.D
of above 10.sup.-7 M.
Description
CONTINUING APPLICATION DATA
[0001] This application is a continuation application of U.S.
application Ser. No. 14/371,910, filed Jul. 11, 2014, which is a
U.S. National Stage Application of International Application No.
PCT/EP2013/050603, filed Jan. 14, 2013, which was published in
English on Jul. 18, 2013, as International Publication No. WO
2013/104804 A2. International Application No. PCT/EP2013/050603
claims priority to European Application No. 12151125.7 filed Jan.
13, 2012. A certified copy of European Application No. 12151125.7
filed Jan. 13, 2012, was provided in and is available in, U.S.
patent application Ser. No. 14/371,910.
SEQUENCE LISTING
[0002] This application contains a Sequence Listing electronically
submitted via EFS-Web to the United States Patent and Trademark
Office as an ASCII text filed entitled "0258.000029US02_ST25.txt"
having a size of 240 kilobytes and created on Feb. 28, 2019. The
information contained in the Sequence Listing is incorporated by
reference herein.
[0003] The present invention relates to a set of polypeptides and
its uses. In particular, the present invention relates to a set of
polypeptides whereby this set comprises two polypeptides each of
which comprises a targeting moiety "T" binding to an antigen "A"
and a fragment of "F" of a functional domain, wherein said two
polypeptides are not associated with each other in absence of a
substrate that has "A" at (on) its surface and wherein, upon
dimerization of "F", the resulting dimer becomes functional.
Furthermore, medical and diagnostic uses of said set are described.
Moreover, the present invention relates to nucleic acid molecule(s)
encoding said set of polypeptides. The present invention also
relates to a vector comprising the nucleotide sequence of nucleic
acid molecule(s) encoding said set of polypeptides. Furthermore,
the present invention relates to pharmaceutical compositions
comprising said set of polypeptides. Moreover, the present
invention relates to a kit comprising said set of polypeptides.
[0004] The last years have seen a number of landmark papers
reporting outstanding efficacy of bispecific antibody constructs
for immune therapy of tumours in vitro and in pre-clinical and
early clinical trials. Today, a substantial number of different
bispecific constructs are available that differ in size,
composition, pharmacokinetics and ability to directly eliminate
neoplastic cells or to engage immune effector cells for tumour cell
lysis.
[0005] Antibody-based cancer immune strategies are highly promising
therapeutic options due to their excellent sensitivity and
specificity towards target structures.
[0006] The modular structural and functional organisation of
antibodies allows extensive manipulation by genetic engineering.
Different immunoglobulin-like domains can be separated and/or
joined without losing specific domain-associated functional
features. Moreover, they can be combined and linked with
heterologous protein domains but also with non-peptidic moieties.
It is therefore possible to develop fusion constructs in a rational
way devoid of the natural limitations of conventional
antibodies.
[0007] Antibody-based fusion proteins can be generated with novel
biological and/or pharmaceutical properties. There are promising
efforts to modify the capability of the Fc domain to elicit ADCC
(antibody dependent cell mediated cytotoxicity) and CDC
(complement-dependent cytotoxicity) by mutagenesis, dependent on
the intended application, either to reduce side effects (inhibitory
mutations) or to enhance therapeutic efficacy (activating
mutations). New applications that become possible by genetic
engineering are even more variate when the antigen binding domain
of antibodies is considered.
[0008] The antigen recognizing variable domains of the heavy
(V.sub.H) and light chain (V.sub.L) of an antibody can be joined by
a peptide linker via genetic engineering while preserving the
antigen binding capability. Such antigen binding single chain
variable fragments (scFvs) can be used as small antibody surrogates
with high tissue penetrating capability and low serum retention
time for clinical imaging procedures and radiotherapy and other
applications. Importantly, these scFv moieties can be easily
employed as antigen specific modules in the development of novel
recombinant therapeutics.
[0009] Recent reports indicate a tremendous potential of
recombinant bispecific antibodies in anti-tumour therapy. Such
bispecific antibodies recognise two antigens, one of which is
expressed by the tumour, whereas the other is usually found on an
immune cell. Most bispecific antibodies in anti-tumour therapy
target a tumour-associated lineage marker on the one hand and
CD3.epsilon., an invariant molecule of the T-cell receptor/CD3
complex on the other hand, thus recruiting T cells to destroy the
tumour [Muller and Kontermann, Bispecific antibodies for cancer
immunotherapy: Current perspectives. BioDrugs 2010,
24(2):89-98].
[0010] Despite the extensive options for manipulating antibody
structure and function, the therapeutic efficacy of such
antibody-based reagents is limited by the nature of the addressed
antigen, the accessibility of the antigen in tumour and
tumour-associated tissues and the aptitude of the antibody to
elicit or mediate the desired cell death inducing function.
[0011] For example, when patients are treated with bispecific
constructs directed against antigens also expressed on tissues with
vital functions, severe side effects are observed. This is a severe
problem, since, with the exception of an unknown number of
individually mutated cell surface molecules and the monoclonal B-
or T-cell receptor in case of lymphomas, tumour specific antigens
that discriminate a transformed cell from its healthy progenitor
are not available.
[0012] Since therapeutic concepts based on the use of bispecific
antibodies usually rely on the recruitment of effector cells, it
appears that the more effective the tool (bispecific construct),
the more likely side effects do occur, and even minute expression
of antigen on non-transformed tissue can cause uncontrollable
off-target effects.
[0013] In 2008, SCIENCE published the first report on the clinical
efficacy of the single-chain bispecific T cell engaging (BiTE)
antibody MT103/blinatumomab; it induces remissions in about 80% of
lymphoma patients relapsed or refractory to standard
immune-chemotherapy at serum levels about 5 orders of magnitude
lower than serum levels reported for the monoclonal antibody
rituximab (Bargou, R. et al Science 321, 974-977, 2008). This
publication and subsequent reports on confirmatory phase II trials
in acute lymphatic leukemia (ALL) ushered in a new era of
bispecific antibodies, until then in grave demise for almost two
decades due to systemic toxicity and little or no therapeutic
activity. Mainly in the wake of that SCIENCE paper, bispecific
antibodies became a burgeoning field again in which more than 35
different formats were counted (Reichert, Drug Discov Today. 17
(2012) 954-963). These formats differ in size and are optimized for
affinity to the antigen, stability, ability to recruit effector
cells (mostly T cells) and pharmacokinetics. Affinity or avidity of
the constructs are manipulated by affinity maturation using diverse
techniques or simply by joining multiple scFv domains in line in
order to create a multivalent construct. Even trispecific
antibodies are reported that are designed to display enhance
binding capabilities by addressing two instead of one target
molecule. Stability of the formats can be optimized by adding
immunoglobulin-like domains in order to mimic naturally occurring
antibodies and to simultaneously enhance pharmacokinetic properties
like prolonged half life in serum and protection from proteolytic
digestion by proteases. Moreover, stability of the formats can be
enhanced by optimizing the production. Since linker sequences which
are utilized to covalently join scFv domains often leads to
aggregates, production lines have been established that first
produce two or three polypeptides that can be easily reassembled in
order to generate a functional drug. Such techniques utilize
directed disulphid-bridges or crosslinking reagents to covalently
join two different polypeptides. Other techniques make use of
hetero- or homo-dimerization domains like leucine-zipper domains,
Fc-domains and others like knob into hole technologies (see, for
example, WO 2007/062466). Moreover, V.sub.H and V.sub.L
interactions, which can be stabilized by the binding of the
antigen, have been used in so called open-sandwich immunoassays for
the detection of the antigen (Ueda, Nature Biotechnology 14 (1996),
1714-1718; Ohmuro-Matsuyama (2012) Detection of Protein
Phosphorylation by
[0014] Open-Sandwich Immunoassay, Integrative Proteomics, Dr.
Hon-Chiu Leung (Ed.), ISBN: 978-953-51-0070-6; WO 2004/016782/EP-A1
1536005.)
[0015] However, bi/tri-specific and bi- or multivalent constructs
described in the art have disadvantages. First, the absence of
truly specific tumor antigens that can be addressed as target
molecule. In fact, the more potent the bispecific antibody format,
the more severe are collateral damages, because the target antigens
addressed so far are differentiation antigens shared by tumours and
non-malignant cells. In consequence, bi- or tri-specific formats of
the prior art cannot discriminate malignant from non-malignant
cells. In this respect, tri-specific constructs, developed for high
avidity binding to target cells, may turn out to confer a high
degree of off-target effects because binding of one target molecule
in general suffice to recruit immune cells for destruction of a
cell which express either target molecule. Thus, tri-specific
construct enhance avidity on the cost of specificity. Recent
multi-parameter analyses indicate that tumor cells can be
distinguished from their respective non-transformed tissues of
origin because of the expression of aberrant antigen signatures.
Today, these findings constitute an integral part of the World
Health Organization (WHO) classification system of hematopoietic
neoplasms, and also hold true for cancer and cancer stem or cancer
initiating cells of other provenance. Thus, it would be
advantageous to target cells that simultaneously express a
combination of antigens that together signify a malignant state.
None of the antibodies disclosed by prior art is able to
discriminate between cells that express a combination of target
antigens from single antigen positive cells. Second, a major
problem of bi-specific antibody technologies using, for example,
complete CD3 modules (e.g. a anti Cd3 scFv) is the inherent ability
of these proteins to stimulate or pre-stimulate T cells
irrespective of binding to the target antigen on target cells and
many side effects observed so far appear to be associated with
errant T cell function.
[0016] Thus, there is a need in the art for more specific treatment
options in cancer treatment, in particular there is a need for
improved ways to identify and/or eliminate cancer cells with higher
specificity and reduce side-effects.
[0017] Similar needs exist in the field of allogeneic stem cell
transplantation, i.e. the transplantation of stem cells obtained
from another person to a patient. A patient suffering from relapsed
or refractory leukaemia or another haematological disease may be
treated by chemotherapy/irradiation (to eliminate the malignant
haematopoietic cells) in combination with a transplantation of
healthy haematopoietic cells from a donor. If elimination of
malignant cells is incomplete, the tumour may grow back from the
surviving malignant recipient cells despite the presence of healthy
cells provided by the transplantation. As a result, survival rates
among patients undergoing tumour treatment and allogeneic
transplantation are significantly reduced.
[0018] However, it is difficult to eliminate (and, similarly, to
identify) the surviving malignant cells with high specificity, and
thus despite various attempts, good solutions to this problem have
not been found. Accordingly, there exists a need in the art to
provide improved ways to specifically identify and/or eliminate
such malignant recipient cells with minimal side effects on other
cells.
[0019] The graft (allogenic stem cells), given shortly after the
conditioning therapy (radiation/chemotherapy) can replace and
reconstitute hematopoiesis. The graft is harvested from either bone
marrow or from stimulated peripheral blood cells and contains about
one percent of hematopoetic stem cells which are the source of
newly built blood cells. In addition, the graft normally contains a
huge number of immune cells, especially T lymphocytes, that are
part of the adoptive immune system and that can be very beneficial
in cases where these T cells mount an immune attack against
leukemic cells. This situation is well described and known as graft
versus leukemia effect. On the other side, an errant immune
response which directs T cells against the patient, known as graft
versus host disease, is also frequently observed.
[0020] To minimize graft versus host disease, grafts are usually
selected on the basis of HLA (human leukocyte antigen) or MHC
(major histocompatibility complex). The closer the antigens between
donor and recipient match the lower is the probability of severe
graft versus host disease. However, for many patients, a full
matched graft cannot be found. In these cases, a bone marrow or
peripheral blood stem cells are utilized that differ in one or even
more HLA molecules. These clinical situation requires a strict
immunosuppressive regimen after transplantation to keep the T cell
system strictly under control.
[0021] It is therefore one object of the present invention to
provide for improved ways to specifically identify and/or eliminate
specific kinds of cells. Moreover, it is an object of the present
invention to provide for improved ways to specifically identify
and/or eliminate cells that have a specific combination of two
specific antigens at their cell surface. Furthermore, it is an
object of the present invention to provide for improved ways to
specifically identify and/or eliminate cancerous cells.
Furthermore, it is an object of the present invention to provide
for improved ways to specifically identify and/or eliminate cells
that (1) are of a certain origin (such as, in the situation of a
tissue or cell transplantation, cells originating from the
recipient or from the donor) and that (2) belong to a specific cell
type or cell lineage (such as haematopoietic cells).
[0022] The objects of the present invention are solved by a set of
polypeptides comprising: [0023] a first polypeptide P1 comprising
[0024] (i) a targeting moiety T1, [0025] wherein said targeting
moiety T1 specifically binds to an antigen A1, and [0026] (ii) a
fragment F1 of a functional domain F, [0027] wherein neither said
fragment F1 by itself nor said polypeptide P1 by itself is
functional with respect to the function of said domain F, [0028]
and [0029] a second polypeptide P2 comprising [0030] (i) a
targeting moiety T2, [0031] wherein said targeting moiety T2
specifically binds to an antigen A2, and [0032] (ii) a fragment F2
of said functional domain F, [0033] wherein neither said fragment
F2 by itself nor said polypeptide P2 by itself is functional with
respect to the function of said domain F, [0034] wherein said
antigen A1 is different from said antigen A2, [0035] wherein said
polypeptide P1 and said polypeptide P2 are not associated with each
other in the absence of a substrate that has both antigens A1 and
A2 at or on its surface, more specifically a cell that carries both
antigens A1 and A2 at or on its cell surface, and wherein, upon
dimerization of said fragment F1 of said polypeptide P1 with said
fragment F2 of said polypeptide P2, the resulting dimer is
functional with respect to the function of said domain F.
[0036] The objects of the present invention are also solved by a
set of polypeptides comprising: [0037] a first polypeptide P1
comprising [0038] (i) a targeting moiety T1, [0039] wherein said
targeting moiety T1 specifically binds to an antigen A1, and [0040]
(ii) a fragment F1 of a functional domain F, [0041] wherein neither
said fragment F1 by itself nor said polypeptide P1 by itself is
functional with respect to the function of said domain F, [0042]
and [0043] a second polypeptide P2 comprising [0044] (i) a
targeting moiety T2, [0045] wherein said targeting moiety T2
specifically binds to an antigen A2, and [0046] (ii) a fragment F2
of said functional domain F, [0047] wherein neither said fragment
F2 by itself nor said polypeptide P2 by itself is functional with
respect to the function of said domain F, [0048] wherein said
antigen A1 is different from said antigen A2, [0049] wherein [0050]
(a) said fragment F1 comprises a V.sub.L domain of an antibody and
said fragment F2 comprises a V.sub.H domain of the same antibody;
or wherein said fragment F1 comprises a V.sub.H domain of an
antibody and said fragment F2 comprises a V.sub.L domain of the
same antibody; or [0051] (b) said fragment F1 comprises a V.sub.L
domain of an antibody and said fragment F2 comprises a V.sub.H
domain of the same antibody; or wherein said fragment F1 comprises
a V.sub.H domain of an antibody and said fragment F2 comprises a
V.sub.L domain of the same antibody; and [0052] wherein said
polypeptide P1 and said polypeptide P2 are not associated with each
other in the absence of a substrate that has both antigens A1 and
A2 at or on its surface, more specifically a cell that carries both
antigens A1 and A2 at or on its cell surface, and [0053] wherein,
upon dimerization of said fragment F1 of said polypeptide P1 with
said fragment F2 of said polypeptide P2, the resulting dimer is
functional with respect to the function of said domain F.
[0054] The objects of the present invention are also solved by a
set of polypeptides comprising: [0055] a first polypeptide P1
comprising [0056] (i) a targeting moiety T1, [0057] wherein said
targeting moiety T1 specifically binds to an antigen A1, and [0058]
(ii) a fragment F1 of a functional domain F, [0059] wherein neither
said fragment F1 by itself nor said polypeptide P1 by itself is
functional with respect to the function of said domain F, [0060]
and [0061] a second polypeptide P2 comprising [0062] (i) a
targeting moiety T2, [0063] wherein said targeting moiety T2
specifically binds to an antigen A2, and [0064] (ii) a fragment F2
of said functional domain F, [0065] wherein neither said fragment
F2 by itself nor said polypeptide P2 by itself is functional with
respect to the function of said domain F, [0066] wherein said
antigen A1 is different from said antigen A2, [0067] wherein [0068]
(c) said fragment F1 comprises a V.sub.L domain of an antibody and
said fragment F2 comprises a V.sub.H domain of the same antibody;
or wherein said fragment F1 comprises a V.sub.H domain of an
antibody and said fragment F2 comprises a V.sub.L domain of the
same antibody; [0069] (d) said polypeptide P1 and said polypeptide
P2 are not associated with each other in the absence of a substrate
that has both antigens A1 and A2 at its surface, more specifically
a cell that carries both antigens A1 and A2 at its cell surface; or
[0070] (e) said fragment F1 comprises a V.sub.L domain of an
antibody and said fragment F2 comprises a V.sub.H domain of the
same antibody; or wherein said fragment F1 comprises a V.sub.H
domain of an antibody and said fragment F2 comprises a V.sub.L
domain of the same antibody; and [0071] wherein said polypeptide P1
and said polypeptide P2 are not associated with each other in the
absence of a substrate that has both antigens A1 and A2 at its
surface, more specifically a cell that carries both antigens A1 and
A2 at its cell surface, and [0072] wherein, upon dimerization of
said fragment F1 of said polypeptide P1 with said fragment F2 of
said polypeptide P2, the resulting dimer is functional with respect
to the function of said domain F, and wherein said polypeptides P1
and P2, in particular said fragments F1 and F2, have, in the
absence of a substrate or cell, with each other a dissociation
constant K.sub.D in the range of 10.sup.-8 M to 10.sup.-2 M.
[0073] The present invention further refers to the following items:
[0074] 1. A set of polypeptides comprising: [0075] a first
polypeptide P1 comprising [0076] (i) a targeting moiety T1, [0077]
wherein said targeting moiety T1 specifically binds to an antigen
A1, and [0078] (ii) a fragment F1 of a functional domain F, [0079]
wherein neither said fragment F1 by itself nor said polypeptide P1
by itself is functional with respect to the function of said domain
F, and [0080] a second polypeptide P2 comprising [0081] (i) a
targeting moiety T2, [0082] wherein said targeting moiety T2
specifically binds to an antigen A2, and [0083] (ii) a fragment F2
of said functional domain F, [0084] wherein neither said fragment
F2 by itself nor said polypeptide P2 by itself is functional with
respect to the function of said domain F, wherein said antigen A1
is different from said antigen A2, wherein said polypeptide P1 and
said polypeptide P2 are not associated with each other in the
absence of a substrate that has both antigens A1 and A2 at its
surface, more specifically a cell that carries both antigens A1 and
A2 at its cell surface, and wherein, upon dimerization of said
fragment F1 of said polypeptide P1 with said fragment F2 of said
polypeptide P2, the resulting dimer is functional with respect to
the function of said domain F. [0085] 2. The set of polypeptides
according to item 1, wherein a cell carrying both antigens A1 and
A2 at its cell surface induces dimerization of the fragment F1 of
said polypeptide P1 with the fragment F2 of said polypeptide P2,
whereas a cell which does not carry both antigens A1 and A2 at its
cell surface does not induce dimerization of the fragment F1 of
said polypeptide P1 with the fragment F2 of said polypeptide P2.
[0086] 3. The set of polypeptides according to item 1 or 2, wherein
said targeting moiety T1 comprises an immunoglobulin module,
preferably an immunoglobulin module I1 comprising a V.sub.L domain
linked to a V.sub.H domain, more preferably an immunoglobulin
module I1 that comprises a scFv (single-chain variant fragment) of
an antibody, or an immunoglobulin module comprising a variable
domain V.sub.HH of a llama antibody, camel antibody or shark
antibody, and/or said targeting moiety T2 comprises an
immunoglobulin module, preferably an immunoglobulin module I2
comprising a V.sub.L domain linked to a V.sub.H domain, more
preferably an immunoglobulin module I2 that comprises a scFv
(single-chain variant fragment) of an antibody, or an
immunoglobulin module comprising a variable domain V.sub.HH of a
llama antibody, camel antibody or shark antibody, or wherein said
targeting moiety T1 and/or said targeting moiety T2 comprises an
aptamer or a natural ligand of said antigen A1 or antigen A2,
respectively [0087] 4. The set of polypeptides according to any of
the preceding items, wherein said antigen A1 and/or said antigen A2
is an antigen expressed on the surface of cells of a tumour or on
the surface of progenitor/precursor cells of a tumour, preferably
an antigen expressed on the surface of cells of a haematologic
tumour or an antigen expressed on the surface of cells of a
non-haematologic tumour. [0088] 5. The set of polypeptides
according to any of the preceding items, wherein the combination of
antigen A1 and antigen A2 is only found on cancerous cells, and not
on cells that are not cancerous, and wherein, preferably, the
combination of antigen A1 and antigen A2 is specific for cancerous
cells of a certain type of cancer. [0089] 6. The set of
polypeptides according to any of the preceding items, wherein said
antigen A1 is an MHC antigen, preferably an allelic variant of any
of HLA-A, HLA-B, HLA-C, HLA-DQ, HLA-DR, or HLA-DM, more preferably
an allelic variant of an MHC class I molecule, more preferably an
allelic variant selected from the group consisting of HLA-A1,
HLA-A2, HLA-A3, HLA-A25, HLA-B7, HLA-B8, HLA-B35, HLA-B44, HLA-Cw3,
HLA-Cw4, and HLA-Cw7, and/or said antigen A2 is an antigen that is
specific for a certain cell type or cell lineage. [0090] 7. The set
of polypeptides according to any of the preceding items, wherein
said functional domain F is an immunoglobulin module, preferably a
scFv (single-chain variant fragment) of an antibody, or a
fluorescent molecule, preferably GFP or a GFP variant, or a
molecule capable of mediating bioluminescence, preferably Gaussia
luciferase. [0091] 8. The set of polypeptides according to any of
the preceding items, wherein said functional domain F is a domain
that specifically binds to a carrier molecule, preferably a carrier
molecule that is a peptide or a carbohydrate molecule, or an
affinity tag, preferably an affinity tag selected from the group
consisting of a FLAG-tag, a myc-tag, a glutathione-S-transferase
(GST)-tag, a hemagglutinin (HA)-tag, a polyhistidine (His)-tag and
a maltose binding protein (MBP)-tag. [0092] 9. The set of
polypeptides according to any of the preceding items, wherein said
functional domain F is a domain that specifically binds to a
radioactive compound, a domain that specifically binds to a toxin
molecule that by itself is not capable of penetrating through the
cell membrane of a human cell and that is internalized into a human
cell upon association with the cell membrane of said cell, a domain
that specifically binds to a fluorescent molecule, or a domain that
specifically binds to a molecule capable of mediating
bioluminescence. [0093] 10. The set of polypeptides according to
any of the preceding items, wherein said fragment F1 comprises a
V.sub.L domain of an antibody and said fragment F2 comprises a
V.sub.H domain of the same antibody, wherein, preferably, said
antibody is an anti-CD3 antibody, or wherein said fragment F1
comprises a V.sub.H domain of an antibody and said fragment F2
comprises a V.sub.L domain of the same antibody, wherein,
preferably, said antibody is an anti-CD3 antibody. [0094] 11. The
set of polypeptides according to any of the preceding items for use
in the treatment of a patient who is suffering from a tumour or for
diagnostic use in a patient who is suffering from a tumour,
preferably for use in the treatment of a patient who is suffering
from a tumour and undergoing allogeneic tissue or cell
transplantation or meant to undergo such transplantation or for
diagnostic use in a patient who is suffering from a tumour and
undergoing or meant to undergo allogeneic tissue or cell
transplantation, wherein, preferably, said set of polypeptides is
administered to said patient. [0095] 12. A nucleic acid molecule or
a set of nucleic acid molecules encoding the set of polypeptides or
one of the polypeptides of the set of polypeptides according to any
of the preceding items. [0096] 13. A vector comprising the
nucleotide sequence of the nucleic acid molecule according to item
12 or the sequence of one of the nucleic acid molecules of the set
of nucleic acid molecules according to item 12. [0097] 14. A
pharmaceutical composition comprising either the set of
polypeptides according to any of items 1 to 11 or the nucleic acid
molecule/set of nucleic acid molecules according to item 12 or the
vector according to item 13, wherein, preferably, said
pharmaceutical composition further comprises a pharmaceutically
acceptable carrier. [0098] 15. A kit comprising the set of
polypeptides according to any of items 1-11.
[0099] Preferably, said antigen A1 is a cell surface molecule.
Preferably, said antigen A2 is a cell surface molecule. Preferably,
said antigen A1 is specific for the malignant state of a cell.
Preferably, said antigen A2 is specific for a certain cell type or
cell lineage or for the malignant state of a cell. Preferably, said
antigen A1 is specific for a malignant cell type. Preferably, said
antigen A2 is specific for a malignant cell type.
[0100] In one aspect, the present invention relates to the set of
polypeptides as defined and described herein, wherein, however, the
antigen A1 is the same as the antigen A2. Hence, in such a set of
polypeptides P1 and P2, the F1 fragment may be linked to the
targeting moiety T1 and the F2 fragment may be linked to the
targeting moiety T2, whereas both T1 and T2 specifically bind to
the same antigen. In this context, the epitope on antigen A1, to
which the targeting moiety T1 binds, may be the same or a different
epitope as the epitope on the antigen A2, to which the targeting
moiety T2 binds. In case the epitope on antigen A1 is the same as
the epitope on the antigen A2, polypeptide P1 may comprise a
targeting moiety which is identical to the targeting moiety
comprised in P2. Also this aspect of the invention is based on the
advantage that the set of polypeptides P1 and P2 with the disrupted
F domain displays no off target effects (for example no
pre-activation of CD3-displaying T cells and, hence, less toxic
properties and/or side effects, for example as compared to
conventional bispecific antibodies).
[0101] In one embodiment, said fragment F1 and said fragment F2
together are said functional domain F.
[0102] In one embodiment, said polypeptide P1 and said polypeptide
P2 are not covalently linked to each other in the absence of a
substrate that has both antigens A1 and A2 at its surface, more
specifically a cell that carries both antigens A1 and A2 at its
cell surface.
[0103] In one embodiment, said polypeptide P1 and said polypeptide
P2 are not covalently linked to each other.
[0104] Said polypeptide P1 and polypeptide P2 and/or, in
particular, said fragment F1 and fragment F2 as comprised therein,
more particular the V.sub.H and V.sub.L which may be comprised
therein, are not associated with each other, in particular when
administered to a subject in need of medical intervention. i.e. in
need of therapy and/or diagnosis. Accordingly, the pharmaceutical
or diagnostic means provided herein comprise the two polypeptides
P1 and P2 as comprised in the herein defined "set of polypeptides"
in non-associated form. The association of said two polypeptides
take place in vivo under the presence of said substrate or cell.
Under the presence of said substrate or cell, the association of
said two polypeptides may be (further) stabilized by a stabilizing
agent (for example an antigen, like, for example, CD3, HIS or DIG
as described herein). Preferably, they are not associated with each
other in the absence of said substrate or cell and/or do not
dimerizise in the absence of said substrate or cell. More
preferably, they are not associated with each other in the absence
of said substrate or cell and/or do not dimerizise in the absence
of said substrate or cell even if an agent is present which
stabilizes association and/or dimerization of polypeptide P1 and
polypeptide P2 and/or, in particular, fragment F1 and fragment F2,
i.e. even if said polypeptide P1 and polypeptide P2 and/or, in
particular, said fragment F1 and fragment F2 is present in an
stabilizing agent/P1(F1)/P2(F2)-trimeric complex (for example in an
antigen/VH/VL-trimeric complex).
[0105] In one specific embodiment, said polypeptide P1 and
polypeptide P2 and/or, in particular, said fragment F1 and fragment
F2 as comprised therein, more particular the V.sub.H and V.sub.L
which may be comprised therein, are associated with each other
and/or dimerizise into a three-part-complex-formation, preferably
by an interaction mediated by an agent which stabilizes association
and/or dimerization of polypeptide P1 and polypeptide P2 and/or, in
particular, fragment F1 and fragment F2 (for example by an
antigen-mediated interaction). Most preferably, however, this
association and/or dimerization only occurs in the presence of said
substrate or cell.
[0106] The affinity strength with which, for example,
leucine-zippers and/or constant domains, like immunoglobulin CH3 or
Fc fragments, hetero- and homodimerize is estimated to be at a
dissociation constant K.sub.D in the range of .about.10.sup.-8 to
10.sup.-11 M (see, for example, Zhu (1997) Protein Sci. 6, 781-8;
Pluckthun (1997) Immunotech. 3, 83-105). This K.sub.D range is
clearly below the K.sub.D with which, in the absence of said
substrate or cell, association and/or dimerization of said
polypeptides P1 and P2, in particular of said fragments F1 and F2,
of this invention might occur. Hence, in one embodiment,
polypeptide P1 and polypeptide P2 and/or, in particular, fragment
F1 and fragment F2 as comprised therein, more particular the
V.sub.H and V.sub.L which may be comprised therein, associate with
each other and/or dimerizise in the absence of said substrate or
cell only with a K.sub.D which is above the K.sub.D of, for
example, hetero- and homodimerization of leucine-zippers and/or
constant domains, like immunoglobulin CH3 or Fc fragments. In the
presence of said substrate or cell, it is envisaged that
polypeptide P1 and polypeptide P2 and/or, in particular, fragment
F1 and fragment F2 as comprised therein, more particular the
V.sub.H and V.sub.L which may be comprised therein, associate with
each other and/or dimerizise with a K.sub.D which is in the range
of the K.sub.D of, for example, hetero- and homodimerization of
leucine-zippers and/or constant domains, like immunoglobulin CH3 or
Fc fragments, or even below this range.
[0107] The interaction strength of, for example, isolated VH and VL
domains in general is of low affinity. Using calorimetric,
fluorometric or ultraviolet difference spectroscopy and/or circular
dichroisma techniques, dissociation constants K.sub.D of 10.sup.-9
to 10.sup.-6 M have been determined (see, for example, Worn J M B
(2001) 305, 989-1010; Pluckthun (1992) Immunological Reviews No
130). Using surface plasmon resonance techniques (SPR biosensor
BIAcore or BIAcore 2000, Pharmacia) and an anti HEL-Antibody system
(anti-hen egg lysozyme antibody HyHEL-10), Ueda (loc. cit.) and
Ohmuro-Matsuyama (loc. cit.) found that isolated VH and VL domains
do not dimerize at all (K.sub.a<10.sup.5/M, below detection
limit). However, association of the VH and VL peptides was
significantly enhanced in the presence of cognate antigens
(K.sub.a.about.10.sup.9/M) with a remarkable reduction of the
dissociation rate of the antigen/VH/VL-trimeric complex with a
calculated
K.sub.d.about.2.73.times.10.sup.-5.+-.1.43.times.10.sup.-6/s at 1.4
.mu.M of the antigen. Hence, it is particularly envisaged in the
context of this invention that the K.sub.D with which, in the
absence of said substrate or cell, association and/or dimerization
of said polypeptides P1 and P2, in particular of said fragments F1
and F2, of this invention might occur is only at, or even above,
the K.sub.D or range of K.sub.D of isolated VH and VL domains, for
example as has been estimated in the context of Worn (loc. cit.),
Pluckthun (1992; loc. cit.), Ueda (loc. cit.) and Ohmuro-Matsuyama
(loc. cit.), in particular above the K.sub.D or range of K.sub.D of
the antigen/VH/VL-trimeric complex as has been estimated in the
context of Worn (loc. cit.), Pluckthun (1992; loc. cit.), Ueda
(loc. cit.) and Ohmuro-Matsuyama (loc. cit.). In the presence of
said substrate or cell, it is envisaged that polypeptide P1 and
polypeptide P2 and/or, in particular, fragment F1 and fragment F2
as comprised therein, more particular the V.sub.H and V.sub.L which
may be comprised therein, associate with each other and/or
dimerizise with a K.sub.D which is (far) below the K.sub.D or range
of K.sub.D of isolated VH and VL domains, for example as has been
estimated in the context of Worn (loc. cit.), Pluckthun (1992; loc.
cit.), Ueda (loc. cit.) and Ohmuro-Matsuyama (loc. cit.),
preferably at, or even below, the K.sub.D or range of K.sub.D of
the antigen/VH/VL-trimeric complex as has been estimated in the
context of Pluckthun (loc. cit.), Ueda (loc. cit.) and
Ohmuro-Matsuyama (loc. cit.)
[0108] In one aspect, polypeptide P1 and polypeptide P2 and/or, in
particular, fragment F1 and fragment F2 as comprised therein, more
particular the V.sub.H and V.sub.L which may be comprised therein,
are not associated in the absence of said substrate or cell and/or
do not dimerizise in the absence of said substrate or cell. If at
all, they associate with each other and/or dimerizise in the
absence of said substrate or cell only with a K.sub.D above
10.sup.-8M, preferably above 10.sup.-6 M, more preferably above
10.sup.-5 M and more preferably above 10.sup.-4M. In another
aspect, if at all, they associate with each other and/or dimerizise
in the absence of said substrate or cell only with a K.sub.D in the
range of 10.sup.-8 M to 10.sup.-2 M, preferably 10.sup.-7 M to
10.sup.-3 M, more preferably 10.sup.-6 M to 10.sup.-3 M and even
more preferably 10.sup.-5 M to 10.sup.-3 M. In another aspect,
polypeptide P1 and polypeptide P2 and/or, in particular, fragment
F1 and fragment F2 as comprised therein, more particular the
V.sub.H and V.sub.L which may be comprised therein, are associated
in the presence of said substrate or cell and/or dimerizise in the
presence of said substrate or cell. In particular, they associate
with each other and/or dimerizise in the presence of said substrate
or cell with a K.sub.D below 10.sup.-6 M, preferably below
10.sup.-7 M, more preferably below 10.sup.-8 M and more preferably
below 10.sup.-9M. They may also associate with each other and/or
may dimerizise in the presence of said substrate or cell with a
K.sub.D in the range of 10.sup.-11 M to 10.sup.-6 M, more
preferably 10.sup.-11 M to 10.sup.-7 M and even more preferably
10.sup.-11 M to 10.sup.-8M.
[0109] In a preferred embodiment, the above even applies in case an
agent is present which stabilizes association and/or dimerization
of polypeptide P1 and polypeptide P2 and/or, in particular,
fragment F1 and fragment F2. For example, such an stabilizing agent
in accordance with this invention may be an antigen, like, for
example, CD3, HIS or DIG as described herein, capable to bind to
the domain F which, for example, may comprise a V.sub.H and a
V.sub.L of an antibody (F1 and F2, respectively, or F2 and F3,
respectively).
[0110] Being "present", in the context of this invention and, in
particular, in the context of the above (i.e. with respect to said
agent and/or said substrate or cell and/or said antigens A1 and
A2), particularly means being present at a concentration in a range
of 0.01 .mu.M to 1 mM, in a range of 0.1 to 500 .mu.M, in a range
of 0.1 to 300 .mu.M, in a range of 0.1 to 100 .mu.M, in a range of
1 to 500 .mu.M, in a range of 10 to 500 .mu.M. Being "absent", in
the context of this invention and, in particular, in the context of
above (i.e. with respect to said agent and/or said substrate or
cell and/or said antigens A1 and A2), particularly means being
present at a concentration below the above ranges or below 1 mM,
500 .mu.M, 300 .mu.M, 100 .mu.M, 10 .mu.M, 1 .mu.M, 0.1 .mu.M, 0.01
.mu.M, 0.001 .mu.M or 1 nM wherein the lower values are
preferred.
[0111] The person skilled in the art is readily in the position to
measure the K.sub.D of dimerization, in particular, of P1 and P2,
more particular of F1 and F2 as comprised therein, more particular
of the V.sub.H and V.sub.L which may be comprised therein. Examples
of respective measuring methods are x-ray crystallography; nuclear
magnet resonance (NMR); isothermal calorimetry (ITC); cryo-electro
microscopy (CEM); mass spectrometry (MS); surface Plasmon resonance
(SPR). Such methods are, for example, described in Protein Surface
Recognition: Approaches for Drug Discovery: Approaches for the
Inhibition of Protein-Protein Interactions for Drug Discovery (Eds:
Ernest Giralt, Mark Peczuh, Xavier Salvatella John Wiley &
Sons; 12. November 2010). Further examples of respective measuring
methods are circular Dichroism Analysis; small Zone Gel Filtratoion
Chromatography; Fluorescence Gel Retardation; Sedimentation
Equilibrium; Fluorescence Polarization Assay; Blot Overlay or Far
Western Blot Analysis; Affinity Capillary Electrophoresis Analysis;
Fluorescence Resonance Energy Transfer (FRET); such methods are,
for example described in Protein'Protein Interactions: Methods and
Applications: 261 (Methods in Molecular Biology); Haian Fu
(Editor); Humana Press; 1 (23. Marz 2004). A preferred method to
measure the K.sub.D in accordance with this invention is
Fluorescence Correlation Spectroscopy (FCS). This method is, for
example, described in Douglas Magde (Physical Review Letters 29,
11, 1972, S. 705-708).
[0112] In one particular aspect, the K.sub.DS referred to herein
(i) apply to, (ii) are at or (iii) are to be measured at a
temperature of 4 to 38.degree. C., preferably 4 to 20.degree. C.
(for example 10.degree. C.) or 20 to 38.degree. C. (for example
30.degree. C.), and/or a pH of 4.5 to 8 (for example a pH of
7),
[0113] "Not associated" in the context of the present invention
particularly means not functionally associated with respect of the
function of the domain F, i.e. not allowing F1 and F2 to form a
functional F. Hence, in one aspect of the invention, P1 and P2 may
be bound to each other (for example covalently) as far as no
functional domain F is formed by F1 and F2. It is, however,
preferred that P1 and P2 are separated.
[0114] In one embodiment, said antigen A1 and/or said antigen A2 is
a molecule.
[0115] In one embodiment, said antigen A1 and/or said antigen A2 is
proteinaceous.
[0116] In one embodiment, said antigen A1 and/or said antigen A2 is
non-proteinaceous.
[0117] In one embodiment, said targeting moiety T1 binds
non-covalently to said antigen A1.
[0118] In one embodiment, said targeting moiety T2 binds
non-covalently to said antigen A2.
[0119] In one embodiment, a substrate having both antigens A1 and
A2 at its surface induces dimerization of the fragment F1 of said
polypeptide P1 with the fragment F2 of said polypeptide P2, whereas
a substrate which does not have both antigens A1 and A2 at its cell
surface does not induce dimerization of the fragment F1 of said
polypeptide P1 with the fragment F2 of said polypeptide P2.
[0120] In one embodiment, a cell carrying both antigens A1 and A2
at its cell surface induces dimerization of the fragment F1 of said
polypeptide P1 with the fragment F2 of said polypeptide P2, whereas
a cell which does not carry both antigens A1 and A2 at its cell
surface does not induce dimerization of the fragment F1 of said
polypeptide P1 with the fragment F2 of said polypeptide P2. In this
context "induces dimerization" particularly means "allows
juxtaposition and subsequent dimerization".
[0121] In one embodiment, said targeting moiety T1 comprises an
immunoglobulin module and/or said targeting moiety T2 comprises an
immunoglobulin module.
[0122] In one embodiment, said targeting moiety T1 comprises an
immunoglobulin module I1 which comprises a V.sub.L domain linked to
a V.sub.H domain, preferably an immunoglobulin module I1 that
comprises a scFv (single-chain variant fragment) of an antibody, a
Fab or a F(ab').sub.2 (for example with additional parts of, for
example, an Fc domain) of an antibody or a complete antibody.
[0123] and/or said targeting moiety T2 comprises an immunoglobulin
module I2 which comprises a V.sub.L domain linked to a V.sub.H
domain, preferably an immunoglobulin module I2 that comprises a
scFv (single-chain variant fragment) of an antibody a Fab or a
F(ab').sub.2 (for example with additional parts of, for example, an
Fc domain) of an antibody or a complete antibody.
[0124] In one embodiment, said targeting moiety T1 and/or said
targeting moiety T2 comprises an immunoglobulin module which
comprises a variable domain V.sub.HH of a llama antibody, a camel
antibody, or a shark antibody.
[0125] In one embodiment, said targeting moiety T1 and/or said
targeting moiety T2 is an aptamer, or a natural ligand of said
antigen A1 or antigen A2, respectively.
[0126] In one embodiment, said targeting moiety T1 and/or said
targeting moiety T2 comprises a Fv or scFv ((single-chain) variant
fragment) of an antibody.
[0127] In one embodiment, the immunoglobulin module comprised in
the targeting moiety T1 and T2 comprises a V domain selected from
the group consisting of: [0128] (i) a V domain of an anti-HLA-A2
antibody comprising a V.sub.L domain comprising SEQ ID NOS: 78 and
79 (CDRs 1 and 3) and DAS (CDR 2) and/or a V.sub.H domain
comprising SEQ ID NOS: 75-77 (CDRs 1-3); [0129] (ii) a V domain of
an anti-HLA-Cw6 antibody comprising a V.sub.L domain comprising SEQ
ID NOS: 83 and 84 (CDRs 1 and 3) and DDS (CDR 2) and/or a V.sub.H
domain comprising SEQ ID NOS: 80-82 (CDRs 1-3); [0130] (iii) a V
domain of an anti-EpCAM antibody comprising a V.sub.L domain
comprising SEQ ID NOS: 88 and 89 (CDRs 1 and 3) and WAS (CDR 2)
and/or a V.sub.H domain comprising SEQ ID NOS: 85-87 (CDRs 1-3);
[0131] (iv) a V domain of an anti-Her2 antibody comprising a
V.sub.L domain comprising SEQ ID NOS: 93 and 94 (CDRs 1 and 3) and
SAS (CDR 2) and/or a V.sub.H domain comprising SEQ ID NOS: 90-92
(CDRs 1-3); [0132] (v) a V domain of an anti-EGFR1 antibody
comprising a V.sub.L domain comprising SEQ ID NOS: 98 and 99 (CDRs
1 and 3) and DAS (CDR 2) and/or a V.sub.H domain comprising SEQ ID
NOS: 95-97 (CDRs 1-3); [0133] (vi) a V domain of an anti-CEA
antibody comprising a V.sub.L domain comprising SEQ ID NOS: 103 and
104 (CDRs 1 and 3) and SAS (CDR 2) and/or a V.sub.H domain
comprising SEQ ID NOS:100-102 (CDRs 1-3); [0134] (vii) a V domain
of an anti-CD45 antibody comprising a V.sub.L domain comprising SEQ
ID NOS: 107 and 108 (CDRs 1 and 3) and LAS (CDR 2) and/or a V.sub.H
domain comprising SEQ ID NOS: 105 and 106 (CDRs 1 and 2) and CDR3
or SEQ ID NOS:132-134 (CDRs 1-3); [0135] (viii) a V domain of an
anti-CD138 antibody comprising a V.sub.L domain comprising SEQ ID
NOS: 112 and 113 (CDRs and 1 and 3) and YTS (CDR 2) and/or a
V.sub.H domain comprising SEQ ID NOS: 109-111 (CDRs 1-3); and
[0136] (ix) a V domain of an anti-CD19 antibody comprising a
V.sub.L domain comprising SEQ ID NOS: 158 and 159 (CDRs 1 and 3)
and DAS (CDR 2) and/or a V.sub.H domain comprising SEQ ID NOS:
155-157 (CDRs 1-3).
[0137] In a further, preferred, embodiment, the immunoglobulin
module comprised in the targeting moiety T1 and/or T2 comprises a V
domain selected from the group consisting of: [0138] (i) a V domain
of an anti-HLA-A2 antibody comprising a V.sub.L domain comprising
SEQ ID NO: 52 and/or a V.sub.H domain comprising SEQ ID NO: 51;
[0139] (ii) a V domain of an anti-HLA-Cw6 antibody comprising a
V.sub.L domain comprising SEQ ID NO: 54 and/or a V.sub.H domain
comprising SEQ ID NO: 53; [0140] (iii) a V domain of an anti-EpCAM
antibody comprising a V.sub.L domain comprising SEQ ID NO: 56
and/or a V.sub.H domain comprising SEQ ID NO: 55; [0141] (iv) a V
domain of an anti-Her2 antibody comprising a V.sub.L domain
comprising SEQ ID NO: 58 and/or a V.sub.H domain comprising SEQ ID
NO: 57; [0142] (v) a V domain of an anti-EGFR1 antibody comprising
a V.sub.L domain comprising SEQ ID NO: 60 and/or a V.sub.H domain
comprising SEQ ID NO: 59; [0143] (vi) a V domain of an anti-CEA
antibody comprising a V.sub.L domain comprising SEQ ID NO: 62
and/or a V.sub.H domain comprising SEQ ID NO: 61; [0144] (vii) a V
domain of an anti-CD45 antibody comprising a V.sub.L domain
comprising SEQ ID NO: 64 and/or a V.sub.H domain comprising SEQ ID
NO: 63; and [0145] (viii) a V domain of an anti-CD138 antibody
comprising a V.sub.L domain comprising SEQ ID NO: 66 and/or a
V.sub.H domain comprising SEQ ID NOS: 65; [0146] (ix) a V domain of
an anti-CD19 antibody comprising a V.sub.L domain comprising SEQ ID
NO: 153 and/or a V.sub.H domain comprising SEQ ID NO: 152.
[0147] In a further, preferred, embodiment, the immunoglobulin
module comprised in the targeting moiety T1 and/or T2 comprises a V
domain comprising any one of SEQ ID NOS: 67-74 and 154.
[0148] In one embodiment, polypeptide P1 has the general structure
F1-T1 and/or polypeptide P2 has the general structure F2-T2. The F
fragment and T moieties may be separated by a linker (e.g.
F1-linker-T1 and/or F2-linker-T2) and/or flanked by (an) additional
amino acid stretche(s) 1 and/or 2 (stretch-F1-(linker)-T1-stretch2
and/or stretch1-F2-(linker)-T2-stretch2). It is preferred that the
above general structure is from the N terminus to the C terminus of
the polypeptides, i.e. N-F1-T1-C and/or N-F2-T2-C, N-F1-linker-T1-C
and/or N-F2-linker-T2-C and N-stretch1-F1-(linker)-T1-stretch2-C
and/or N-stretch1-F2-(linker)-T2-stretch2-C. In case the targeting
moiety is or comprises an immunoglobulin module I, like an Fv or
scFv, polypeptide P1 may have the general structure F1-VH1-VL1
and/or polypeptide P2 may have the general structure F2-VH2-VL2 or
polypeptide P1 may have the general structure F1-VL1-VH1 and/or
polypeptide P2 may have the general structure F2-VL2-VH2. Also in
these cases the F fragment and T moieties may be separated by a
linker (e.g. F1-linker-VH/VL1-VL/VH1 and/or
F2-linker-VH/VL2-VL/VH2) and/or flanked by (an) additional amino
acid stretche(s) 1 and/or 2
(stretch1-F1-(linker)-VH/VL1-VL/VH1-stretch2 and/or
stretch1-F2-(linker)-VH/VL2-VL/VH2-stretch2). Also in this case, it
is preferred that the above general structure is from the N
terminus to the C terminus of the polypeptides, i.e.
N-F1-VH/VL1-VL/VH1-C and/or N-F2-VH/VL2-VL/VH2-C,
N-F1-linker-VH/VL1-VL/VH1-C and/or N-F2-linker-VH/VL2-VL/VH2-C and
N-stretch1-F1-(linker)-VH/VL1-VL/VH1-stretch2-C and/or
N-stretch1-F2-(linker)-VH/VL2-VL/VH2-stretch2-C. There may also a
linker be present between VH and VL or VL and VH.
[0149] The above described linker, in particular the between the V
domains, may comprise 1 to 25 amino acids, preferably 12 to 20
amino acids, preferably 12 to 16 or 15 to 20 amino acids. The above
described linker may comprise one or more (G.sub.3S; SEQ ID NO:199)
and/or (G.sub.4S; SEQ ID NO:200) motives, in particular 1, 2, 3, 4,
5 or 6 (G.sub.3S) and/or (G.sub.4S) motives, preferably 3 or 4
(G.sub.3S) and/or (G.sub.4S) motives, more preferably 3 or 4
(G.sub.4S) motives.
[0150] In one embodiment, said immunoglobulin module I1 and said
fragment F1 are separated by a linker comprising 1 to 12,
preferably 3 to 12, amino acids, and/or said immunoglobulin module
I2 and said fragment F2 are separated by a linker comprising 1 to
12, preferably 3 to 12, amino acids.
[0151] In one embodiment, the V.sub.L domain of I1 is linked to the
V.sub.H domain of I1 by a linker comprising 12 to 25 amino acids,
preferably a linker with the sequence (G.sub.3S).sub.3 (SEQ ID
NO:199) or (G.sub.3S).sub.4 (SEQ ID NO:199) or (G.sub.4S).sub.3
(SEQ ID NO:200) or (G.sub.4S).sub.4 (SEQ ID NO:200) and/or the
V.sub.L domain of I2 is linked to the V.sub.H domain of I2 by a
linker comprising 12 to 25 amino acids, preferably a linker with
the sequence (G.sub.3S).sub.3 or (G.sub.3S).sub.4 or
(G.sub.4S).sub.3 or (G.sub.4S).sub.4.
[0152] As mentioned, the linker as describe above may comprise
(G.sub.3S; SEQ ID NO:199) and/or (G.sub.4S; SEQ ID NO:200) motives.
Alternative linkers may consist of or comprise the
GEGTSTGSGGSGGSGGAD (SEQ ID NO:198) motif. The person skilled in the
art can without further ado find and use further (peptide) linker
known in the art.
[0153] The said additional amino acid stretches 1 and/or 2 may
consist of or comprise 1 to 200, 1 to 100, 1 to 70, 1 to 65, 1 to
50, 1 to 25 or 1 to 20 amino acids.
[0154] In one embodiment, said antigen A1 and/or said antigen A2 is
an antigen expressed on the surface of cells of a tumour or on the
surface of progenitor/precursor cells of a tumour, preferably an
antigen expressed on the surface of cells of a haematologic tumour,
more preferably an antigen expressed on the surface of cells
selected from the group consisting of acute myeloic leukemia cells,
chronic myeloic leukemia cells, acute lymphatic leukemia cells,
chronic lymphatic leukemia cells, lymphoma cells,
myeloproliferative syndrome cells, myelodysplastic cells, more
preferably myeloma cells, or said antigen A1 and/or said antigen A2
is an antigen expressed on the surface of cells of a
non-haematologic tumour, preferably a cell selected from the group
consisting of renal cell carcinoma cells, bladder cancer cells,
lung cancer cells, mesothelioma cells, prostate cancer cells, brain
cancer cells, bone cancer cells, sarcoma cells, soft tissue cancer
cells, ovarian cancer cells, cervix cancer cells, breast cancer
cells, endometrial cancer cells, uterine cancer cells, germ cell
tumour cells, anal cancer cells, rectal carcinoma cells, colon
carcinoma cells, small intestine carcinoma cells, gastric carcinoma
cells, gastrointestinal stroma tumour cells, liver carcinoma cells,
pancreas carcinoma cells, bile duct carcinoma cells, gall bladder
carcinoma cells, head and neck cancer cells, hypopharyngeal cancer
cells, laryngeal cancer cells, cells of a cancer of the esophagus,
skin cancer cells, preferably melanoma cells, cells of a childhood
cancer, cells of an endocrine tumour, cells of a carcinoid tumour,
thymoma cells, thyroid cancer cells, cells of an islet cell tumour,
cells of an adrenal cell tumour, cells of a neuroendocrine tumour
and cells of a cancer of unknown primary (cancer of unknown primary
origin). Detailed information on such cancers can be found in the
relevant literature, such as "Cancer Medicine", J F Holland, E Frei
(editors), Mcgraw-Hill Professional, 8th edition (2010) and
references cited therein.
[0155] In one embodiment, the combination of antigen A1 and antigen
A2 is only found on blood cells or precursor cells of blood cells,
preferably on only one type of blood cells.
[0156] In one embodiment, the combination of antigen A1 and antigen
A2 is only found on target, in particular, cancerous cells, and not
(or only to a negligible extent) on cells that are not target
cells, in particular, that are not cancerous. In a preferred
embodiment, the combination of antigen A1 and antigen A2 is
specific for cancerous cells of a certain type of cancer.
[0157] In one embodiment, the combination of antigen A1 and antigen
A2 distinguishes a certain kind of cells, preferably a certain type
of cancer cells, from any other cells.
[0158] "Certain type of cancer" in this context may mean type of
cancer characterized by the same organ in which the cancer is
formed or, preferred, type cancer characterized by the same pair of
(aberrant) antigens A1 and A2.
[0159] In one embodiment, the combination of antigen A1 and antigen
A2 is found on progenitor/precursor cells that are
progenitor/precursor cells of a tumour and not on
progenitor/precursor cells that are not progenitor/precursor cells
of a tumour.
[0160] In one embodiment, said antigen A1 is an antigen that is
specific for the malignant state of a cell and said antigen A2 is
an antigen that is specific for the cell type or cell lineage of
said cell.
[0161] In one embodiment, [0162] a) antigen A1 is EpCAM (epithelial
cell adhesion molecule) and antigen A2 is CD10 (cluster of
differentiation 10), HER2/neu (human epidermal growth factor
receptor 2), VEGF-R (vascular endothelial growth factor receptor),
EGFR (epidermal growth factor receptor; also called HER1 (human
epidermal growth factor receptor 1) or ErbB1) or MDR (multidrug
resistance protein), or [0163] b) antigen A1 is MCSP
(melanoma-associated chondroitin sulfate proteoglycan) and antigen
A2 is melanoferrin or EpCAM, or [0164] c) antigen A1 is CA125
(cancer antigen 125/carbohydrate antigen 125) and antigen A2 is
CD227 (PEM (polymorphic epithelial mucin) or MUC1 (mucin-1)), or
[0165] d) antigen A1 is CD56 and antigen A2 is CD140b (PDGFR.beta.
(platelet-derived growth factor receptor beta)) or GD3 ganglioside,
or [0166] e) antigen A1 is EGFR and antigen 2 is HER2, or [0167] f)
antigen A1 is PSMA (prostate-specific membrane antigen) and antigen
2 is HER2, or [0168] g) antigen 1 is Sialyl Lewis and antigen 2 is
EGFR, or [0169] h) antigen 1 is CD44 and antigen 2 is ESA
(epithelial surface antigen) (CD326, EpCAM), CD24, CD133, MDR
(multidrug resistance protein) or CD117, or [0170] i) antigen 1 is
CD34 and antigen 2 is CD19, CD79a, CD2, CD7, HLA-DR (human
leukocyte antigen DR), CD13, CD117, CD33 or CD15, or [0171] j)
antigen 1 is CD33 and antigen 2 is CD19, CD79a, CD2, CD7, HLA-DR
(human leukocyte antigen DR), CD13, CD117 or CD15, or [0172] k)
antigen 1 is MUC1 and antigen 2 is CD10, CEA or CD57, or [0173] l)
antigen 1 is CD38 and antigen 2 is CD138, or [0174] m) antigen 1 is
CD24 and antigen 2 is CD29 or CD49f, or [0175] n) antigen 1 is
carbonic anhydrase IX and antigen 2 is aquaporin, preferably
aquaporin-2.
[0176] In one embodiment, said antigen A1 and/or said antigen A2 is
selected from the group consisting of HLA-A (HLA-A major
histocompatibility complex, class I, A [Homo sapiens]; Gene ID:
3105 updated on 13 Jan. 2013; DAQB-90C11.16-002; Chromosome: 6;
NC_000006.11 (29910247 . . . 29913661); for HLA-A2: 1. mRNA=LOCUS
NM_001242758=Version NM_001242758.1 GI:337752169=GenBank:
AY191309.1 PRI 13 Jan. 2013; 2. Protein=P79495 [UniParc]. Last
modified May 1, 1997. Version 1; for HLA-Cw6: mRNA=LOCUS
HUMMHCCW6A=GenBank: VERSION M28160.1 GI:531197PRI (18 Aug. 1994);
Protein=Q29963 [UniParc]. Last modified Aug. 22, 2003. Version 2);
EpCAM (EPCAM epithelial cell adhesion molecule [Homo sapiens]; also
known as ESA; KSA; M4S1; MK-1; DIAR5; EGP-2; EGP40; KS1/4; MIC18;
TROP1; EGP314; HNPCC8; TACSTD1; Gene ID: 4072, updated on 6 Jan.
2013; mRNA=VERSION NM_002354.2 GI:218505669PRI 6 Jan. 2013;
Protein=P16422 [UniParc]. last modified Nov. 13, 2007. Version 2);
CD45 (PTPRC protein tyrosine phosphatase, receptor type, C [Homo
sapiens]; also known as LCA; LY5; B220; CD45; L-CA; T200; CD45R;
GP180; Gene ID: 5788, updated on 13 Jan. 2013; mRNA=VERSION
NM_002838.4 GI:392307006 PRI 13 Jan. 2013; Protein=P08575-1=Isoform
1, Last modified Jul. 19, 2003. Version 2; Protein=P08575-2=Isoform
2); Her2 (ERBB2 v-erb-b2 erythroblastic leukemia viral oncogene
homolog 2, neuro/glioblastoma derived oncogene homolog (avian)
[Homo sapiens]; also known as NEU; NGL; HER2; TKR1; CD340; HER-2;
MLN 19; HER-2/neu; gene ID: 2064, updated on 13 Jan. 2013; mRNA
transcript variant 1=VERSION NM_004448.2 GI:54792095, PRI 6 Jan.
2013; mRNA transcript variant 2=VERSION NM_001005862.1 GI:54792097,
PRI 6 Jan. 2013; Protein=P04626-1=Isoform 1, Last modified Aug. 13,
1987. Version 1; Protein=P04626-2=Isoform 2;
Protein=P04626-3=Isoform 3; Protein=P04626-4=Isoform 4); EGFR (EGFR
epidermal growth factor receptor [Homo sapiens]; also known as
ERBB; HER1; mENA; ERBB1; PIG61; Gene ID: 1956, updated on 13 Jan.
2013; mRNA transcript variant 1=VERSION NM_005228.3 GI:41327737,
PRI 13 Jan. 2013; mRNA transcript variant 2=VERSION NM_201282.1
GI:41327731, PRI 13 Jan. 2013; mRNA transcript variant 3=VERSION
NM_201283.1 GI:41327733, PRI 13 Jan. 2013; mRNA transcript variant
4=VERSION NM_201284.1 GI:41327735, PRI 13 Jan. 2013;
Protein=P00533-1=Isoform 1, Last modified Nov. 1, 1997. Version 2;
Protein=P00533-2=Isoform 2; Protein=P00533-3=Isoform 3;
Protein=P00533-4=Isoform 4); CD138 (SDC1 syndecan 1 [Homo sapiens];
Gene ID: 6382, updated on 6 Jan. 2013; mRNA transcript variant
1=VERSION NM_001006946.1 GI:55749479, PRI 6 Jan. 2013; mRNA
transcript variant 2=VERSION NM_002997.4 GI:55925657, PRI 6 Jan.
2013; Protein=P18827 [UniParc]. Last modified May 5, 2009. Version
3); CEA (CEACAM5 carcinoembryonic antigen-related cell adhesion
molecule 5 [Homo sapiens]; also known as CEA; CD66e; Gene ID: 1048,
updated on 13 Jan. 2013; mRNA=VERSION NM_004363.2 GI:98986444, PRI
13 Jan. 2013; P06731, Last modified Jan. 11, 2011. Version 3); and
CD19 (CD19 CD19 molecule [Homo sapiens]; also known as B4; CVID3;
Gene ID: 930, updated on 5 Jan. 2013; mRNA transcript 1=VERSION
NM_001178098.1 GI:296010920, PRI 6 Jan. 2013; mRNA transcript
2=VERSION NM_001770.5 GI:296010919, PRI 6 Jan. 2013; Protein=P15391
[UniParc]. Last modified Nov. 13, 2007. Version 6).
[0177] In one embodiment, said antigen A1 and/or said antigen A2 is
an MHC antigen, preferably an allelic variant of any of HLA-A,
HLA-B, HLA-C, HLA-DQ, HLA-DR, or HLA-DM, more preferably an allelic
variant of an MHC class I molecule, more preferably an allelic
variant selected from the group consisting of HLA-A1, HLA-A2,
HLA-A3, HLA-A25, HLA-B7, HLA-B8, HLA-B35, HLA-B44, HLA-Cw3,
HLA-Cw4, HLA-Cw6, and HLA-Cw7.
[0178] In one embodiment, said antigen A1 is HLA-A2.
[0179] In one embodiment, said antigen A1 and/or said antigen A2 is
selected from the group consisting of CD45, aquaporin, preferably
aquaporin-2, scavenger receptor class B member 1 (SCARB1), CD34,
CD33, CD138, CD15, CD1a, CD2, CD3, CD4, CD5, CD8, CD20, CD23, CD31,
CD43, CD56, CD57, CD68, CD79a, CD146, synaptophysin, CD56, CD57,
nicotinic acetylcholine receptor, muscle-specific kinase (MUSK),
voltage-gated calcium channel (P/Q-type), voltage-gated potassium
channel (VGKC), N-methyl-D-aspartate receptor (NMDA), TSH (thyroid
stimulating hormone) receptor, amphiphysin, HepPar-1, ganglioside
GQ1B, ganglioside GD3, ganglioside GM1 and glycophorin-A.
[0180] In a preferred embodiment, said antigen A1 is an MHC antigen
and said antigen A2 is an antigen that is specific for a certain
cell type or cell lineage.
[0181] In one embodiment, said functional domain F is an
immunoglobulin module, preferably a scFv (single-chain variant
fragment) of an antibody more preferably a Fv (variant fragment) of
an antibody, or a fluorescent molecule, preferably a bimolecular
fluorescence complementation molecule, more preferably GFP or a GFP
variant, or a molecule capable of mediating bioluminescence,
preferably a luciferase molecule, more preferably Gaussia
luciferase.
[0182] In one embodiment, said functional domain F is a Fv (variant
fragment) of an antibody.
[0183] In one embodiment, said functional domain F specifically
binds or is capable of specifically binding to an antigen. In a
specific aspect, said antigen may be an antigen that is present on
cells of the human immune system. In a preferred embodiment, said
binding activates said cells of the human immune system.
[0184] In one embodiment, said functional domain F is a T cell
engaging domain, preferably a T cell engaging domain specifically
binding to CD2, CD3, CD5, T cell receptor or CD28, more preferably
a T cell engaging domain specifically binding to CD3.epsilon., an
NK cell (natural killer cell) engaging domain, preferably a NK cell
engaging domain specifically binding to CD1a, CD16a or CD56, a
domain engaging macrophage cells, preferably a domain engaging
macrophage cells specifically binding to CD16a, CD32a, CD32b, CD89
or CD64, a monocyte engaging domain, preferably a monocyte engaging
domain specifically binding to CD32a, CD32b, CD64 or CD89, a
granulocyte engaging domain, preferably a granulocyte engaging
domain specifically binding to CD16b, CD32a, CD32b, CD64, or CD89,
a domain engaging neutrophil granulocytes, preferably a domain
engaging neutrophil granulocytes that specifically binds to CD89
(Fc.alpha.RI), or a domain engaging activated neutrophil
granulocytes, monocytes and/or macrophages, preferably a domain
engaging activated neutrophil granulocytes, monocytes and/or
macrophages that specifically binds to CD64 (Fc.gamma.RI).
[0185] In one embodiment, said functional domain F is a domain that
specifically binds to an antigen linked to a diagnostic or
therapeutic compound.
[0186] In one embodiment, said functional domain F is a domain that
specifically binds to a carrier molecule or an affinity tag.
Preferably, said carrier molecule is linked to a diagnostic or
therapeutic compound. Preferably, said affinity tag is linked to a
diagnostic or therapeutic compound.
[0187] Preferably, said affinity tag is selected from the group
consisting of a FLAG-tag, a myc-tag, a glutathione-S-transferase
(GST)-tag, a hemagglutinin (HA)-tag, a polyhistidine (His)-tag, a
digoxigenin (DIG)-tag and a maltose binding protein (MBP)-tag.
[0188] Preferably, said carrier molecule is a peptide or a
carbohydrate molecule. In a preferred embodiment, said functional
domain F is a domain that specifically binds to a carrier molecule,
preferably a carrier molecule linked to a diagnostic or therapeutic
compound, wherein said carrier molecule is selected from the group
consisting of gelatine, inulin, dextrane and hydroxyethyl
starch.
[0189] In one embodiment, said therapeutic compound is a
radioactive compound, preferably a radioactive compound comprising
.sup.90Y, .sup.177Lu, .sup.131I, .sup.32P, .sup.10B, or .sup.213Bi.
In one embodiment, said therapeutic compound is a toxin.
Preferably, said toxin is selected from the group consisting of B.
anthracis edema factor, B. anthracis lethal factor, C. perfringens
iota toxin, C. botulinum C2 toxin, C. difficile
ADP-ribosyltransferase, C. diphtherias diphteria toxin fragment A,
Burgholderia sp. shiga toxin (subunit A), Clostridium perfringens
str. 13 toxin pfoA perfringolysin O, Ricin A chain, plant RIP
bouganin, Human RNASE3 ribonuclease (RNase A family, 3) and anthrax
lethal factor endopeptidase. A further non-limiting example of a
toxin in accordance with this invention is a toxin being or
comprising an amino acid sequence selected from the group
consisting of SEQ ID NOS 160 to 168.
[0190] In one embodiment, said diagnostic compound is a radioactive
compound, preferably a radioactive compound comprising .sup.99mTc,
.sup.111In, .sup.82Rb or .sup.201Tl. In one embodiment, said
diagnostic compound is a fluorescent compound, preferably GFP, a
GFP variant, or a fluorescent small-molecule compound such as FITC
(fluorescein isothiocyanate), PE (phycoerythrin), an alexa fluor
dye (such as AlexaFluor488 or related dyes) or a cyanine dye (such
as Cy3 (Indocarbocyanine) or Cy5 (Indodicarbocyanine) or related
dyes), In one embodiment, said diagnostic compound is a molecule
capable of mediating bioluminescence, preferably a luciferase
molecule, more preferably Gaussia luciferase.
[0191] In one embodiment, said fragment F1 comprises a V.sub.L
domain of an antibody and said fragment F2 comprises a V.sub.H
domain of the same antibody, wherein, preferably, said antibody is
an anti-CD3 antibody, more preferably an anti-CD3.epsilon.
antibody, or an anti-His or anti-DIG antibody or said fragment F1
comprises a V.sub.H domain of an antibody and said fragment F2
comprises a V.sub.L domain of the same antibody, wherein,
preferably, said antibody is an anti-CD3 antibody, more preferably
an anti-CD3.epsilon. antibody, or an anti-His or anti-DIG
antibody.
[0192] In another embodiment, the V.sub.L and V.sub.H domains as
comprised in the F1 and F2 fragment, respectively, or in the F2 and
F1 fragment, respectively may also of two different antibodies,
either specific for the same Antigen (and for the same or a
different epitope) or for different Antigen. This is, for example,
envisaged to be employed where new specifications are to be created
(for example in phage-display approaches).
[0193] In another embodiment, the immunoglobulin module comprised
in the F domain comprises a V domain selected from the group
consisting of: [0194] (i) a V domain of an anti-CD3 antibody
comprising a V.sub.L domain comprising SEQ ID NOS: 18-20 (CDRs 1-3)
and/or a V.sub.H domain comprising SEQ ID NOS: 15-17 (CDRs 1-3);
[0195] (ii) a V domain of an anti-CD3 antibody comprising a V.sub.L
domain comprising SEQ ID NOS: 24-26 (CDRs 1-3) and/or a V.sub.H
domain comprising SEQ ID NOS: 21-23 (CDRs 1-3); [0196] (iii) a V
domain of an anti-CD3 antibody comprising a V.sub.L domain
comprising SEQ ID NOS: 30-32 (CDRs 1-3) and/or a V.sub.H domain
comprising SEQ ID NOS: 27-29 (CDRs 1-3); [0197] (iv) a V domain of
an anti-CD3 antibody comprising a V.sub.L domain comprising SEQ ID
NOS: 36 and 37 (CDRs 1 and 3) and DTS (CDR 2) and/or a V.sub.H
domain comprising SEQ ID NOS: 33-35 (CDRs 1-3); [0198] (v) a V
domain of an anti-CD3 antibody comprising a V.sub.L domain
comprising SEQ ID NOS: 41 and 42 (CDRs 1 and 3) and YTN (CDR 2)
and/or a V.sub.H domain comprising SEQ ID NOS: 38-40 (CDRs1-3); and
[0199] (vi) a V domain of an anti-His antibody comprising a V.sub.L
domain comprising SEQ ID NOS: 46 and 47 (CDRs 1 and 3) and KVS (CDR
2) and/or a V.sub.H domain comprising SEQ ID NOS: 43-45 (CDRs 1-3);
[0200] (vii) a V domain of an anti-DIG antibody comprising a
V.sub.L domain comprising SEQ ID NOS: 50 and 131 (CDRs 1 and 3) and
YSS (CDR 2) and/or a V.sub.H domain comprising SEQ ID NOS: 48 and
49 (CDRs 1 and 2) and A (CDR 3).
[0201] In another, preferred embodiment, the immunoglobulin module
comprised in the F domain comprises a V domain selected from the
group consisting of: [0202] (i) a V domain of an anti-CD3 antibody
comprising a V.sub.L domain comprising SEQ ID NO: 2 and/or a
V.sub.H domain comprising SEQ ID NO: 1; [0203] (ii) a V domain of
an anti-CD3 antibody comprising a V.sub.L domain comprising SEQ ID
NO: 4 and/or a V.sub.H domain comprising SEQ ID NO: 3; [0204] (iii)
a V domain of an anti-CD3 antibody comprising a V.sub.L domain
comprising SEQ ID NO: 6 and/or a V.sub.H domain comprising SEQ ID
NO: 5; [0205] (iv) a V domain of an anti-CD3 antibody comprising a
V.sub.L domain comprising SEQ ID NO: 8 and/or a V.sub.H domain
comprising SEQ ID NO: 7; [0206] (v) a V domain of an anti-CD3
antibody comprising a V.sub.L domain comprising SEQ ID NO: 10
and/or a V.sub.H domain comprising SEQ ID NO: 9; and [0207] (vi) a
V domain of an anti-His antibody comprising a V.sub.L domain
comprising SEQ ID NO: 12 and/or a V.sub.H domain comprising SEQ ID
NO: 11; [0208] (vii) a V domain of an anti-DIG antibody comprising
a V.sub.L domain comprising SEQ ID NO: 14 and/or a V.sub.H domain
comprising SEQ ID NO: 30.
[0209] In one embodiment, said functional domain F is a domain that
specifically binds to a toxin molecule, preferably a toxin molecule
that by itself is not capable of penetrating through the cell
membrane of a human cell and that, preferably, is internalized into
a human cell upon association with the cell membrane of said cell,
wherein, preferably, said association with the cell membrane of
said cell is mediated by specifically binding to a heterodimer
formed from two molecules, preferably two molecules associated with
said cell membrane, wherein, preferably, said two molecules are the
polypeptides P1 and P2 as described herein. In one embodiment, said
functional domain F is a domain that specifically binds to the
A-component (active component) of a bacterial two-component A-B
toxin. In one embodiment said functional domain F is a domain that
specifically binds to a toxin selected from the group consisting of
B. anthracis edema factor, B. anthracis lethal factor, C.
perfringens iota toxin, C. botulinum C2 toxin, C. difficile
ADP-ribosyltransferase, C. diphtherias diphteria toxin fragment A,
Burgholderia sp. shiga toxin (subunit A), Clostridium perfringens
str. 13 toxin pfoA perfringolysin O, Ricin A chain, plant RIP
bouganin, Human RNASE3 ribonuclease (RNase A family, 3) and anthrax
lethal factor endopeptidase. A further non-limiting example of a
toxin in accordance with this invention is a toxin being or
comprising an amino acid sequence selected from the group
consisting of SEQ ID NOS 160 to 168.
[0210] In one embodiment, said functional domain F is a domain that
specifically binds to a fluorescent molecule, preferably a
fluorescent molecule that by itself is not capable of penetrating
through the cell membrane of a human cell. Preferably, said
fluorescent molecule is GFP or a GFP variant or a molecule that is
or comprises a fluorescent small-molecule compound such as FITC
(fluorescein isothiocyanate), PE (phycoerythrin), an alexa fluor
dye (such as AlexaFluor488 or related dyes) or a cyanine dye (such
as Cy3 (Indocarbocyanine) or Cy5 (Indodicarbocyanine) or related
dyes).
[0211] In one embodiment, said functional domain F is a domain that
specifically binds to a molecule capable of mediating
bioluminescence, preferably to a luciferase molecule, more
preferably to Gaussia luciferase.
[0212] In one embodiment, said functional domain F is a fluorescent
molecule, preferably a bimolecular fluorescence complementation
molecule, more preferably GFP or a GFP variant, such as YFP, CFP,
Venus, or Cerulean.
[0213] Examples of particular polypeptides P1 or P2 comprised in
the set of polypeptides according to this invention are
polypeptides comprising an amino acid sequence selected from the
group consisting of SEQ ID NOS: 114-129 and 197.
[0214] In general, the present invention relates to the treatment
or elimination of any undesired cell population and the treatment
or prevention of any disorder or disease which comes along with
this undesired cell population. For this purpose, the set of
polypeptides of this invention is to be used.
[0215] In one embodiment, said set of polypeptides is a set of
polypeptides for use in the treatment of a patient who is suffering
from a tumour or cancer or for diagnostic use in a patient who is
suffering from a tumour or cancer, preferably for use in the
treatment of a patient who is suffering from a tumour or cancer and
undergoing allogeneic tissue or cell transplantation or meant to
undergo such transplantation, or for diagnostic use in a patient
who is suffering from a tumour or cancer and undergoing or meant to
undergo allogeneic tissue or cell transplantation, wherein,
preferably, said set of polypeptides is administered to said
patient.
[0216] Examples of tumours to be treated or diagnosed are those for
which the tumour or cancer cells are described herein above with
respect to the antigens A1 and/or A2.
[0217] In one embodiment, said treatment involves the elimination
of recipient tissue/cells of a certain cell type, preferably a
cancerous cell type, or recipient precursor cells giving rise to a
certain cell type, preferably to a cancerous cell type, optionally
after or in parallel to transplantation to the recipient of donor
tissue/cells of said same cell type or donor precursor cells giving
rise to said same cell type.
[0218] In one embodiment, the set of polypeptides of the invention
is for use in an allogeneic transplantation setting for
haematopoietic neoplasias, for example, with mismatched HLA
antigens, in particular for use in therapeutically exploiting this
mismatch situation. In this exemplary situation, the dual
information of recipient HLA haplotype (HLA.sub.patient) and
haematopoietic lineage origin (CD45) is displayed exclusively on
leukemic blasts and other haematopoietic cells of the patient. All
other cells of recipient origine express the recipient haplotype
but not the hematopoietic lineage antigen CD45 (e.g. recipient
non-hematopoietic cells are positive for HLA-A2 but negative for
CD45). Likewise, all donor hematopoietic cells express donor HLA
haplotype molecules that means that they are CD45 positive but
HLA-A2 negative in the situation a mismatch transplantation where
the patient but not the donor is positive for HLA-A2. Consequently,
the present invention also relates to bimolecular and complementing
single-chain antibody constructs directed against HLA-A2, in cases
where the patient but not the donor is HLA-A2 positive, and a
second construct specific for the haematopoietic lineage marker
CD45 to specifically target all hematopoietic cells of the patient
including all hematologic neoplasms. Hence, the first polypeptide
P1 may comprise a single-chain variable fragment antibody construct
directed against the HLA of the patient (targeting moiety T1) fused
to the V.sub.L fragment of F1 antiCD3 (for example, fragment F1).
The second polypeptide P2 may comprise a single-chain variable
fragment construct specific for a haematopoietic lineage marker
(for example, CD45; targeting moiety T2), fused to the V.sub.H
split-fragment of F2 anti CD3-Fv (fragment F2).
[0219] In one embodiment, said elimination involves the destroying
of said recipient tissue/cells or said recipient precursor cells by
cells of the immune system, by a toxin or by a radioactive
compound.
[0220] In one embodiment, said set of polypeptides is a set of
polypeptides for diagnostic use in a patient undergoing allogeneic
tissue or cell transplantation, wherein, preferably, said patient
is a patient suffering from a tumour.
[0221] In one embodiment, said diagnostic use involves the specific
detection of recipient cells of a certain cell type or cell lineage
among recipient cells of different cell type or cell lineage and
donor cells of the same or different type or cell lineage.
[0222] In one embodiment, said diagnostic use involves the specific
detection of recipient cells that are malignant cells among
recipient cells that are not malignant and among donor cells. In
one embodiment, said set of polypeptides is administered to a
patient.
[0223] Preferably, said patient is a mammal, more preferably a
human being.
[0224] In one embodiment, said administration occurs by bolus
administration or by continuous administration.
[0225] In one embodiment, the polypeptides P1 and P2 of said set of
polypeptides are administered in parallel. In another embodiment,
the polypeptides P1 and P2 of said set of polypeptides are
administered sequentially.
[0226] In one embodiment, one of the polypeptides P1 or P2 of said
set of polypeptides is administered by bolus administration,
whereas the other one is administered by continuous
administration.
[0227] In one embodiment, the amount of polypeptide administered is
in the range of from 0.5 .mu.g/m.sup.2 per day to 500 .mu.g/m.sup.2
per day for the polypeptide P1 or for the polypeptide P2 or for
each of the polypeptides P1 and P2, preferably in the range of from
5 .mu.g/m.sup.2 per day to 200 .mu.g/m.sup.2 per day for the
polypeptide P1 or for the polypeptide P2 or for each of the
polypeptides P1 and P2, more preferably in the range of from 10
.mu.g/m.sup.2 per day to 80 .mu.g/m.sup.2 per day for the
polypeptide P1 or for the polypeptide P2 or for each of the
polypeptides P1 and P2.
[0228] In one embodiment, the amount of polypeptide administered is
in the range of from 0.05 .mu.g/m.sup.2 per day to 0.5
.mu.g/m.sup.2 per day for the polypeptide P1 or for the polypeptide
P2 or for each of the polypeptides P1 and P2.
[0229] In one embodiment, the amount of polypeptide P1 administered
is different from the amount of polypeptide P2 administered.
[0230] In one embodiment, the amount of polypeptide administered is
in the range of from 0.5 .mu.g/m.sup.2 per day to 50 .mu.g/m.sup.2
per day for the polypeptide P1 or for the polypeptide P2 or for
each of the polypeptides P1 and P2. In one embodiment, the amount
of polypeptide administered is in the range of from 50
.mu.g/m.sup.2 per day to 100 .mu.g/m.sup.2 per day for the
polypeptide P1 or for the polypeptide P2 or for each of the
polypeptides P1 and P2. In one embodiment, the amount of
polypeptide administered is in the range of from 100 .mu.g/m.sup.2
per day to 200 .mu.g/m.sup.2 per day for the polypeptide P1 or for
the polypeptide P2 or for each of the polypeptides P1 and P2. In
one embodiment, the amount of polypeptide administered is in the
range of from 200 .mu.g/m.sup.2 per day to 300 .mu.g/m.sup.2 per
day for the polypeptide P1 or for the polypeptide P2 or for each of
the polypeptides P1 and P2. In one embodiment, the amount of
polypeptide administered is in the range of from 300 .mu.g/m.sup.2
per day to 400 .mu.g/m.sup.2 per day for the polypeptide P1 or for
the polypeptide P2 or for each of the polypeptides P1 and P2. In
one embodiment, the amount of polypeptide administered is in the
range of from 400 .mu.g/m.sup.2 per day to 500 .mu.g/m.sup.2 per
day for the polypeptide P1 or for the polypeptide P2 or for each of
the polypeptides P1 and P2. In one embodiment, the amount of
polypeptide administered is in the range of from 500 .mu.g/m.sup.2
per day to 1 mg/m.sup.2 per day for the polypeptide P1 or for the
polypeptide P2 or for each of the polypeptides P1 and P2.
[0231] Further reference points for deriving the amounts of the
polypeptides P1 and P2 to be administered can also be obtained by
consulting studies carried out with bispecific antibody constructs
(e.g. Bargou R et al., Tumor regression in cancer patients by very
low doses of a T cell-engaging antibody. Science. 2008;
321(5891):974-7; and Topp M S et al. Targeted therapy with the
T-cell-engaging antibody blinatumomab of chemotherapy-refractory
minimal residual disease in B-lineage acute lymphoblastic leukemia
patients results in high response rate and prolonged leukemia-free
survival. J Clin Oncol. 2011, 29:2493-8).
[0232] In one embodiment, said administration occurs continuously
for at least 12 hours or for at least 1 day or for at least 2 days
or for at least 3 days or for at least 4 days or for at least 5
days or for at least 6 days or for at least 7 days or for at least
8 days or for at least 9 days or for at least 10 days or for at
least 11 days or for at least 12 days or for at least 13 days or
for at least 14 days or for at least 15 days or for at least 16
days or for at least 17 days or for at least 18 days or for at
least 19 days or for at least 20 days or for at least 21 days or
for at least 22 days or for at least 23 days or for at least 24
days or for at least 25 days or for at least 26 days or for at
least 27 days or for at least 28 days or for at least 29 days or
for at least 30 days or for at least 5 weeks or for at least 6
weeks.
[0233] In one embodiment, said administration of said set of
polypeptides or of one of the polypeptides of said set of
polypeptides occurs intravenously, preferably by intravenous
injection.
[0234] In one embodiment, said administration of said set of
polypeptides or of one of the polypeptides of said set of
polypeptides occurs subcutaneously, preferably by subcutaneous
injection.
[0235] In one embodiment, said set of polypeptides is administered
in combination with one or more drugs selected from the group
consisting of an immunomodulatory drug, and/or a steroid,
preferably prednisolone or prednisone.
[0236] In one embodiment, said set of polypeptides is administered
in combination with a radioactive compound, preferably a
radioactive compound linked to an antigen, a carrier molecule or an
affinity tag, wherein said radioactive compound, said antigen, said
carrier molecule or said affinity tag is specifically bound by said
functional domain F.
[0237] In one embodiment, said set of polypeptides is administered
in combination with a toxin, preferably a toxin linked to an
antigen, a carrier molecule or an affinity tag, wherein said toxin,
said antigen, said carrier molecule or said affinity tag is
specifically bound by said functional domain F.
[0238] In one embodiment, said set of polypeptides is administered
in combination with a fluorescent molecule, preferably a
fluorescent molecule linked to an antigen, a carrier molecule or an
affinity tag, wherein said fluorophore, said antigen, said carrier
molecule or said affinity tag is specifically bound by said
functional domain F.
[0239] In one embodiment, said functional domain F is a domain that
specifically binds to an antigen which is not recognized as foreign
by the immune system of said patient to whom said set of
polypeptides is administered.
[0240] In one embodiment two sets of polypeptides as described
above (a first set of polypeptides and a second set of
polypeptides) are administered simultaneously or sequentially. In
one preferred embodiment, said first set of polypeptides has
different fragments F1 and F2 than said second set of polypeptides.
In one preferred embodiment, said first set of polypeptides has the
same fragments F1 and F2 as said second set of polypeptides. In one
preferred embodiment, the targeting moieties T1 and T2 of said
first set of polypeptides bind to the same antigens as the
targeting moieties T1 and T2, respectively, of said second set of
polypeptides. In one preferred embodiment, the targeting moieties
T1 and T2 of said first set of polypeptides bind to different
antigens than the targeting moieties T1 and T2 of said second set
of polypeptides.
[0241] In one embodiment, said patient has undergone cancer
treatment before treatment with said set of polypeptides, said
cancer treatment preferably being chemotherapy, radiation therapy
or operative removal of the tumour, or undergoes cancer treatment
parallel to treatment with said set of polypeptides, said cancer
treatment preferably being chemotherapy, radiation therapy or
operative removal of the tumour.
[0242] In one embodiment, said set of polypeptides or one of the
polypeptides of said set of polypeptides has been produced by means
of a prokaryotic or eukaryotic expression system or by de novo
peptide synthesis.
[0243] In one embodiment, said set of polypeptides or one of the
polypeptides of said set of polypeptides is generated inside said
patient by protein expression from a nucleic acid introduced into
said patient.
[0244] Many patients suffer from allergic or auto-immune diseases.
In many of these cases, a clonal B cell population produce an
errant antibody that reacts with antigens expressed by the
patients' tissues or complex with an allergen, causing anaphylactic
reactions. In both cases, it is desirable to specifically eliminate
the errant B cell clone.
[0245] To this end, one may modify the combinatorial system in a
way so that one arm (P1 or P2, in particular T1 or T2) recognizes a
B cell associated antigen (e.g. CD19, CD20, CD38 or CD138) and the
other arm (P2 or P1, in particular T2 or T1, respectively) is the
allergen or the substrate bound by the antibody that causes the
autoimmune disease. When these two constructs bind to a B cell that
is CD19 (CD20, CD38 or CD138) positive and simultaneously displays
the clonotypic antibody on the surface, the attached anti-CD3 VH
and VL can interact and reconstitute the CD3 binding site exactly
on the B cell. This allergen-specific or antigen-specific assembly
will ultimately result in the clonal depletion of the Target B
cells.
[0246] Hence, in accordance with this invention, any of said
antigens A1 and A2 may also be a clonotypic antibody on the surface
of a B cell, in particular a B cell that causes an autoimmune
disorder.
[0247] In this context, for example, one of said antigens A1 and A2
may be CD19 and the other one may be a clonotypic antibody on the
surface of a B cell, in particular a B cell that causes an
autoimmune disorder.
[0248] In accordance with this aspect of the invention, any one of
said targeting moiety T1 and T2 may comprise an allergen or
substrate which binds to the clonotypic antibody on the surface of
the B cell and/or which is, upon binding to the clonotypic
antibody, capable to cause an autoimmune disorder. Non-limiting
examples of an allergen comprised in any one of said targeting
moiety T1 and T2 are hair allergens, like, for example, dog-hair,
cat-hair (e.g. Fel d 1, Feld d1A, Feld d1B) or guinea-pig-hair
allergens, or pollen allergens, like, for example, birch, grass,
pollen allergens. Further non-limiting examples are mite allergens
(for example Tyr p 2, Der P1, Der f 2), cat allergens (for example
Fel d 1, Feld d1A, Feld d1B), peanut allergens (for example
Conglutin-7), rot fungus allergens (for example Alt a 1), dog
allergens (for example Can f 1), sprue wheat allergens (for example
Alpha/beta-gliadin), german cockroach allergens (for example Bla g
1.02 variant allergen), birch tree or (major) pollen allergens (for
example Cyn d 1, Pha a 1, Dac g 3, Phl p 2, Phl p 1, Profilin, Bet
v 1-L, Bet v 1-A), major apple allergens (for example Mal d 1),
cow's milk allergens (for example alpha-lactalbumin,
alpha-S1-casein), chicken egg allergens (for example lysozyme C,
ovalbumin) and Horse allergens (for example latherin, Equ c 1), and
the like. A further non-limiting and preferred example of an
allergen comprised in any one of said targeting moiety T1 and T2 is
the antigen for human myeloma cell line U266 antibody IgE-ND. A
further non-limiting and preferred example of an allergen comprised
in any one of said targeting moiety T1 and T2 is an allergen being
or comprising an amino acid sequence selected from the group
consisting of SEQ ID NOS 169 to 195.
[0249] In this context, the inventions also relates to the set of
polypeptides as described herein, and, in particular in the above
aspect, for use in treating or preventing a disorder selected from
the group consisting of [0250] (i) an autoimmune disorder; and
[0251] (ii) a hypersensitivity disorder.
[0252] Non-limiting examples of an autoimmune disorder to be
treated or prevented in accordance with this invention are selected
from the group consisting of [0253] (i) allergic disorders; [0254]
(ii) Multiple Sclerosis; [0255] (iii) Psoriasis; [0256] (iv)
Systemic Lupus Erythematosus; [0257] (v) Sjogren's syndrome; [0258]
(vi) Rheumatoid Arthritis; [0259] (vii) Idiopathic Thrombocytopenic
Purpura; [0260] (viii) Diabetes; [0261] (xi) Vasculitis; [0262] (x)
Crohn's disease; and [0263] (xi) Amyloidosis.
[0264] Non-limiting examples of a hypersensitivity disorder to be
treated or prevented in accordance with this invention are selected
from the group consisting of allergies (type I hypersensitivity
reaction according to Coombs and Gell classification), an antibody
dependent cytotoxic reaction (type II hypersensitivity reaction), a
immune complex disease (type III hypersensitivity reaction),
delayed type hypersensitivity (type IV hypersensitivity reaction)
and a receptor mediated autoimmune disease (type V hypersensitivity
reaction).
[0265] In a preferred embodiment, said autoimmune or
hypersensitivity disorder comes along with or is triggered by
allogenic stem cell transplantation (i.e. any of type I to type V
hypersensitivity disorder according to the Coombs and Gell
classification).
[0266] Many cells which are infected by a pathogen (for example a
virus, like, for example, HIV, EBV, CMV) express pathogen-encoded
proteins on their cell surface. Hence, in accordance with this
invention, any of said antigens A1 and A2 may also be such a
pathogen-encoded protein, like, for example, a HIV, EBV or CMV
protein on the surface of a cell. In this context, the inventions
also relates to the set of polypeptides as described herein for use
in treating or preventing an infectious disease, for example a
viral infectious disease. Particular examples of pathogen-encoded
proteins can be derived from http://www.uniprot.org/uniprot/and are
HIV gp120 (Q78706); EBV LMP-2 (P13285); CMV gB (P06473); HBV HBS
(Q9JG36); HCV E1 (C4B751); HCV E2 (Q6TRB1); Human adenovirus C
serotype 2 HAdV-2 (P03276).
[0267] The objects of the present invention are also solved by a
nucleic acid molecule or a set of nucleic acid molecules encoding
the set of polypeptides or one of the polypeptides of the set of
polypeptides as defined in the embodiments above, wherein,
preferably, said nucleic acid molecule or the nucleic acid
molecules of said set of nucleic acid molecules comprises an export
signal that mediates secretion of the encoded polypeptide(s) by a
bacterial or eukaryotic cell.
[0268] A non-limiting example of the nucleic acid molecule or set
of nucleic acid molecules according to this invention comprises one
or more of the nucleotide sequences as depicted in any one of SEQ
ID NOS: 135-150 and 196.
[0269] The objects of the present invention are also solved by a
vector comprising the nucleotide sequence of the nucleic acid
molecule as defined above or the sequence of one of the nucleic
acid molecules of the set of nucleic acid molecules as defined
above.
[0270] The objects of the present invention are also solved by a
cell comprising said nucleic acid/set of nucleic acids or said
vector.
[0271] The objects of the present invention are also solved by a
pharmaceutical composition comprising either the set of
polypeptides as defined above or the nucleic acid molecule/set of
nucleic acid molecules as defined above or the vector as defined
above, wherein, preferably, said pharmaceutical composition further
comprises a pharmaceutically acceptable carrier.
[0272] The objects of the present invention are also solved by a
kit comprising the set of polypeptides as defined above and/or the
nucleic acid molecule or the set of nucleic acid molecules
according the invention and/or the vector according the
invention.
[0273] In one embodiment, the polypeptides of said set of
polypeptides comprised by said kit are contained in a single
vial.
[0274] In one preferred embodiment, the polypeptides of said set of
polypeptides comprised by said kit are contained in separate
vials.
[0275] In one embodiment, one or more of the polypeptides of said
set of polypeptides comprised by said kit are freeze-dried.
[0276] In one embodiment, one or more of the polypeptides of said
set of polypeptides comprised by said kit are in solution.
[0277] The objects of the present invention are also solved by a
method for treatment of a patient who is suffering from a [0278]
(i) tumour or cancer and/or who is undergoing allogeneic cell or
tissue transplantation; [0279] (ii) an autoimmune disorder; or
[0280] (iii) a hypersensitivity disorder. [0281] Said method may
comprise the steps: [0282] obtaining a set of polypeptides, said
set of polypeptides comprising [0283] a first polypeptide P1
comprising [0284] (i) a targeting moiety T1, wherein said targeting
moiety T1 specifically binds to an antigen A1, and [0285] (ii) a
fragment F1 of a functional domain F, [0286] wherein neither said
fragment F1 by itself nor said polypeptide P1 by itself is
functional with respect to the function of said domain F, [0287]
and [0288] a second polypeptide P2 comprising [0289] (i) a
targeting moiety T2, [0290] wherein said targeting moiety T2
specifically binds to an antigen A2, said antigen A2 being a cell
surface molecule that is specific for a certain cell type or cell
lineage, and [0291] (ii) a fragment F2 of said functional domain F,
[0292] wherein neither said fragment F2 by itself nor said
polypeptide P2 by itself is functional with respect to the function
of said domain F, [0293] wherein said antigen A1 is different from
said antigen A2, [0294] wherein said polypeptide P1 and said
polypeptide P2 are not associated with each other in the absence of
a substrate that has both antigens A1 and A2 at its surface, more
specifically a cell that carries both antigens A1 and A2 at its
cell surface, and [0295] wherein, upon dimerization of said
fragment F1 of said polypeptide P1 with said fragment F2 of said
polypeptide P2, the resulting dimer is functional with respect to
the function of said domain F, [0296] administering said set of
polypeptides to said patient.
[0297] In such method of treatment, said set of polypeptides is as
defined in the embodiments above.
[0298] The objects of the present invention are also solved by a
method of using the set of polypeptides as described above for
treatment of a patient undergoing cell or tissue
transplantation.
[0299] The objects of the present invention are also solved by the
use of a set of proteins as defined in the embodiments above for
the manufacture of a medicament for the treatment of a patient
suffering from the above defined and described diseases a disorder
or, for example, a patient suffering from cancer and/or undergoing
cell or tissue transplantation.
[0300] As used herein, the term "polypeptide" refers to a linear
molecular chain of amino acids containing more than 30 amino acids.
Optionally, a polypeptide may include one or more disulfide bonds
or be chemically modified. Moreover, optionally a non-proteinaceous
element (such as a fluorophore, RNA-aptamer, DNA-aptamer, or small
molecule) may be attached to said linear molecular chain of amino
acids. Such polypeptides can be produced by any known method. The
polypeptide can for example be generated by expression from a
nucleic acid coding for said polypeptide, or can be synthesized by
solid phase synthesis methods, or be produced by conjugation or
linkage of existing molecules, e.g., by chemical linkage.
[0301] The term "polypeptide P1" is used to refer to a polypeptide
comprising (i) a targeting moiety, wherein said targeting moiety
specifically binds to an antigen, and (ii) a fragment of a
functional domain, wherein neither said fragment by itself nor said
polypeptide P1 by itself is functional with respect to the function
of said functional domain. The term "polypeptide P2" is used to
refer to a polypeptide comprising (i) a targeting moiety, wherein
said targeting moiety specifically binds to an antigen, and (ii) a
fragment of a functional domain, wherein neither said fragment by
itself nor said polypeptide P2 by itself is functional with respect
to the function of said functional domain.
[0302] The term "domain", as used herein, refers to a linear
molecular chain of amino acids that includes the amino acid
sequence of an entire polypeptide or a portion of a polypeptide.
Optionally, a domain may include one or more disulfide bonds or be
chemically modified. Moreover, optionally a domain may comprise a
non-proteinaceous element (such as a fluorophore). In one
embodiment, however, the term "domain" does not comprise compounds
that are chemically modified or comprise non-proteinaceous
element(s).
[0303] A "functional domain", as used herein, is a domain that is
capable of fulfilling a certain function, such as specific binding
to a certain binding partner or antigen, specific activation of a
certain receptor, mediation of toxic effects, or fluorescence upon
excitation with light of an appropriate wavelength.
[0304] The term "functional domain F" is preferably meant to also
include compounds that are non-proteinaceous. In one embodiment,
however, it refers to a proteinaceous compound or a functional part
thereof.
[0305] The term "a fragment of a domain", as used herein, refers to
a linear molecular chain of amino acids that corresponds to a part
of a domain, but not the entire domain. Optionally, a fragment of a
domain may include one or more disulfide bonds or be chemically
modified. Moreover, optionally a domain may comprise a
non-proteinaceous element or part of such a non-proteinaceous
element.
[0306] The term "fragment F1" is used to refer to a fragment of a
functional domain. The term "fragment F2" is used to refer to a
fragment of a functional domain.
[0307] The pairwise abbreviations P1, P2; T1, T2; F1, F2; A1, A2;
and I1, I2, as used herein, are meant to designate different
polypeptides, targeting moieties, fragments, antigens, and
immunoglobulin modules, respectively. They are synonymous to first
polypeptide, second polypeptide; first targeting moiety, second
targeting moiety; first fragment, second fragment; first antigen,
second antigen; and first immunoglobulin module, second
immunoglobulin module, respectively.
[0308] The term "moiety", as used herein, refers to a linear
molecular chain of amino acids that includes the amino acid
sequence of an entire polypeptide or a portion of a polypeptide.
Optionally, a moiety may include one or more disulfide bonds or be
chemically modified. Moreover, optionally a moiety may comprise a
non-proteinaceous element (such as an oligonucleotide). In one
embodiment, however, the term "moiety" does not comprise compounds
that are chemically modified or comprise non-proteinaceous
element(s).
[0309] The term "targeting moiety T1" is used to refer to a moiety
that specifically binds to an antigen, for example antigen A1. The
term "targeting moiety T2" is used to refer to a moiety that
specifically binds to an antigen, for example antigen A2.
[0310] As used herein, a "linker" is a sequence of amino acids
within a polypeptide that connects two parts of said polypeptide or
two domains comprised by said polypeptide.
[0311] The term "nucleic acid molecule", as used by the present
invention, defines a linear molecular chain consisting of more than
30 nucleotides. The term includes DNA, such as cDNA or genomic DNA,
and RNA.
[0312] The term "construct", as used herein, refers to a nucleic
acid molecule comprising one or more recombinant nucleotide
sequences. The term also includes polypeptides that are expressed
from a recombinant nucleotide sequence or that are artificially
made or recombinant molecules that comprise two or more amino acid
sequences that are not naturally found within the same protein.
[0313] The term "specifically binds to" or "specifically binds", as
used by the present invention in the context of a molecule or
domain that specifically binds to an interaction partner or antigen
or that specifically binds an interaction partner or antigen, means
that a molecule or domain binds to said interaction partner or
antigen, preferably by non-covalent binding, or is capable of
binding said interaction partner or antigen, preferably by
non-covalent binding, and does not or essentially not cross-react
with any other interaction partner or antigen with a structure
similar to that of the interaction partner or antigen.
[0314] In the context of a targeting moiety (such as targeting
moiety T1 or T2) specifically binding to an antigen (such as
antigen A1 or A2), the term "specifically binds to" is meant to
refer to a situation where either said targeting moiety is capable
of specifically binding to said antigen, or where it actually binds
thereto.
[0315] In the context of a T cell engaging domain, an NK cell
engaging domain, domain engaging macrophage cells, a monocyte
engaging domain, a granulocyte engaging domain, a domain engaging
neutrophil granulocytes, or a domain engaging activated neutrophil
granulocytes, monocytes and/or macrophages, the term "specifically
binding to" an antigen or molecule or "specifically binds to" an
antigen or molecule is meant to refer to a situation where either
the respective domain is capable of specifically binding to said
antigen or molecule, or where it actually binds thereto.
[0316] In the context of a functional domain being a domain that
"specifically binds to" an antigen, a molecule, a compound, a
carrier molecule or an affinity tag, the term "specifically binds
to" is meant to refer to a situation where either said functional
domain is capable of specifically binding to said antigen,
molecule, compound, carrier molecule or affinity tag, or where it
actually binds thereto.
[0317] In the context of a toxin, fluorophore, antigen, carrier
molecule or affinity tag being "specifically bound by" a functional
domain, this is meant to refer to a situation where either said
functional domain is capable of specifically binding to said toxin,
fluorophore, antigen, carrier molecule or affinity tag, or where it
actually binds thereto.
[0318] As used in the present application, a molecule or antigen is
"specific for a certain cell type or cell lineage" if it is
expressed by said cell type/cells of said cell lineage, but not (or
only to a negligible extent) by other cell types or cells of other
cell lineage. In some embodiments, a molecule or antigen is
"specific for a certain cell type or cell lineage" if it is
expressed by said cell type/cells of said cell lineage, and not
more than a few other cell types or cells of other cell lineage
besides said cell type/cells of said cell lineage express said
antigen as well, while most other cell types or cells of other cell
lineage besides said cell type/cells of said cell lineage do not
express said antigen (or only to a negligible extent). The term
"specific for a certain cell type or cell lineage" may also mean
that said molecule or antigen is expressed by said cell type/cells
of said cell lineage at a higher rate or at a higher proportion or
amount than by other cell types/cells of other cell lineages, in
the sense that there may be a small but detectable expression of
said molecule also in other cell types/cells of other cell
lineages. The term "marker", as used herein in the context of a
marker for a certain cell type or cell lineage, can refer to a
molecule or antigen that is specific for a cell type or cells of a
cell lineage, respectively, as described above.
[0319] As used herein, the term "aptamer" refers to a small
compound composed of oligonucleic acid (such as RNA or DNA) or
peptidic or non-peptidic molecule that binds to a specific target
molecule with high affinity.
[0320] As used herein, the term "carrier molecule" refers to a
molecule or part of a molecule that is not recognized as foreign by
the immune system of a patient to whom the set of polypeptides
according to the invention is administered or that causes no or
only a weak immune reaction by a patient to whom the set of
polypeptides according to the invention is administered.
Preferably, such a "carrier molecule" is being bound by or capable
of being bound by another molecule, such as an antibody. In some
embodiments, a "carrier molecule" is a molecule or part of a
molecule that In certain embodiments, the carrier molecule is
attached covalently or non-covalently to a second molecule or part
of a second molecule, for example a fluorophore or toxin.
[0321] The term "MHC" refers to the Major Histocompatibility
Complex, which is a set of genes encoding a group of molecules
comprising cell-surface molecules that are required for antigen
presentation to T-cells and that are also responsible for rapid
graft rejections. In humans, the MHC includes the genes HLA-A,
HLA-B, HLA-C, HLA-DP, HLA-HQ, and HLA-DR. In the present
application, the term is used to refer to the genes of the Major
Histocompatibility Complex as well to the gene products encoded by
these genes. The term "HLA" refers to Human Leukocyte Antigens. As
used herein, "HLA" is the human form of "MHC".
[0322] The term "allelic variant", as used herein, denotes any of
two or more alternative forms of a gene occupying the same
chromosomal locus. For example, HLA-A1, HLA-A2, and HLA-A3 are
three of the allelic variants of HLA-A. The term allelic variant is
also used herein to denote a protein encoded by an allelic variant
of a gene.
[0323] The term "antigen", as used herein, refers to a molecule
known to be specifically bound by or capable of being specifically
bound by an antibody or the antigen-binding part of an antibody. In
its broadest meaning, "antigen A1" refers to an antigen as defined
above. In its broadest meaning "antigen A2" refers to an antigen as
defined above. The designations "antigen A1" and "antigen A2" have
been chosen in order to allow for distinction between "antigen A1"
and "antigen A2". An "MHC antigen" is an antigen that is also a
molecule belonging to the major histocompatibility complex. MHC
antigens include MHC class I antigens (in humans, the antigens
HLA-A, -B, and -C) and MHC class II antigens (in humans, the
antigens HLA-DP, -DQ, and -DR). The phrase that a cell "carries an
antigen" or "carries an antigen at its cell surface" is meant to
refer to a situation where a cell expresses an antigen that is
present at the cell surface of said cell and accessible for an
antibody from outside said cell. The phrase that a substrate "has
an antigen at its surface" is meant to refer to a situation where
said antigen is present at the surface of said substrate and
accessible for an antibody applied to said substrate.
[0324] The term "an antigen that is specific for the malignant
state of a cell", as used herein, refers to an antigen that a
malignant cell of a certain cell type (such as a malignant B-cell
tumour cell) carries at its cell surface, but that a cell of the
same cell type that is not malignant (such as a non malignant
B-cell) does not (or only to a negligible extent) carry at its cell
surface.
[0325] The term "an antigen/molecule that is specific for a
malignant cell type", as used herein, refers to an antigen/molecule
that a malignant cell of a certain cell type (such as malignant
B-cell tumour cell) carries at its cell surface, but that a cell of
the same cell type that is not malignant (such as a non malignant
B-cell) or cells of other cell types (such as T-cells or
hepatocytes) do not (or only to a negligible extent) carry at their
cell surface. In some embodiments, the term "an antigen/molecule
that is specific for a malignant cell type" refers to an
antigen/molecule that a malignant cell of a certain cell type (such
as malignant B-cell tumour cell) carries at its cell surface, but
that a cell of the same cell type that is not malignant (such as a
non malignant B-cell) does not (or only to a negligible extent)
carry at its cell surface, and that only cells of a few other cell
types besides that certain cell type carry at their cell surface,
while cells of most other cell types do not (or only to a
negligible extent). The term "an antigen/molecule that is specific
for a malignant cell type" may also mean that said antigen/molecule
is expressed by said malignant cell of a certain cell type at a
higher rate or at a higher proportion or amount than by a cell of
the same cell type that is not malignant, in the sense that there
may be a small but detectable expression of said molecule also in a
cell of the same cell type that is not malignant. The term
"marker", as used herein in the context of a marker for the
malignant state of a certain cell or for a malignant cell type, can
refer to a molecule or antigen that is specific for the malignant
state of a certain cell or for a malignant cell type, respectively,
as described above.
[0326] The term "immunoglobulin domain", as used herein, refers to
a domain that essentially consists of a globular region of an
antibody chain. Immunoglobulin domains are characterized in that
they retain the immunoglobulin fold characteristic of antibody
molecules. Immunoglobulins, such as IgG, IgE, or IgM, are composed
of a varying number of heavy and light chains. Each heavy and light
chain contains a constant region and a variable region. Each light
chain variable region (V.sub.L) and each heavy chain variable
region (V.sub.H) contains three hypervariable regions, also called
"complementarity-determining regions" or "CDRs". The CDRs are
primarily responsible for binding of the immunoglobulin to an
antigen.
[0327] The terms "V.sub.H" or "V.sub.H domain" are used
interchangeably and refer to the variable region of an
immunoglobulin heavy chain of an antibody. The terms "V.sub.L" or
"V.sub.L domain" are used interchangeably and refer to the variable
region of an immunoglobulin light chain of an antibody.
[0328] The term "immunoglobulin module", as used herein, refers to
a molecule, part of a molecule or molecular assembly which
comprises one or more, preferably two or more, immunoglobulin
domains and which is capable of binding to an antigen. Preferably,
an "immunoglobulin module" comprises a linear molecular chain of
amino acids that includes the amino acid sequence of one or more,
preferably two or more, immunoglobulin domains. Optionally, an
"immunoglobulin module" comprises one ore more, preferably two or
more, disulfide bonds. Included in the term "immunoglobulin module"
are molecules or parts of a molecule that comprise or consist of a
"single-chain variant fragment" of an antibody. Included in the
term "immunoglobulin module" are also molecules or parts of a
molecule that comprise or consist of a V.sub.HH domain of a llama
antibody, a camel antibody, or a shark antibody.
[0329] The term "immunoglobulin module I1" is used to refer to an
immunoglobulin module comprising a V.sub.L domain linked to a
V.sub.H domain. Preferably, said V.sub.L domain and said V.sub.H
domain of said immunoglobulin module I1 are derived from the same
antibody. Preferably, said V.sub.L domain and said V.sub.H domain
of said immunoglobulin module I1 form a dimer. Preferably, said
dimer is capable of specifically binding to an antigen. Said
antigen may be, for example, the antigen A1. In one embodiment,
said "immunoglobulin module I1" comprises a "single-chain variant
fragment" of an antibody that is capable of specifically binding to
an antigen, for example the antigen A1.
[0330] The term "immunoglobulin module I2" is used to refer to an
immunoglobulin module comprising a V.sub.L domain linked to a
V.sub.H domain. Preferably, said V.sub.L domain and said V.sub.H
domain of said immunoglobulin module I2 are derived from the same
antibody. Preferably, said V.sub.L domain and said V.sub.H domain
of said immunoglobulin module I2 form a dimer. Preferably, said
dimer is capable of specifically binding to an antigen. Said
antigen may be, for example, the antigen A2. In one embodiment,
said "immunoglobulin module I2" comprises a "single-chain variant
fragment" of an antibody that is capable of specifically binding to
an antigen, for example the antigen A2.
[0331] Within a construct of an immunoglobulin module comprising a
V.sub.L domain linked to a V.sub.H domain, the V.sub.L domain may
be positioned N- or C-terminally of the corresponding V.sub.H
domain. The skilled person is able to determine which arrangement
of the V.sub.H and V.sub.L domains is more suitable for a specific
single-chain variant fragment domain.
[0332] The terms "Fv" and "variant fragment", as used herein,
refers to a fragment of an antibody that is the minimum antibody
fragment which contains a complete antigen recognition and binding
site. This region consists of a dimer of one heavy and one light
chain variable region in a tight, non-covalent association
(V.sub.H-V.sub.L dimer). In this configuration, the V.sub.H and
V.sub.L domain together define an antigen binding site with antigen
binding specificity on the surface of the V.sub.H-V.sub.L
dimer.
[0333] The terms "scFv", "single chain Fv", and "single-chain
variant fragment" are used interchangeably and are meant to
designate an antibody or portion of an antibody in which the
variable region of the heavy chain (V.sub.H) and the variable
region of the light chain (V.sub.L) of a traditional two chain
antibody have been joined to form one chain. Typically, a linker is
inserted between the two chains to allow for proper folding and
creation of an active binding site.
[0334] The term "llama antibody", as used herein, refers to an
antibody or part of an antibody derived from llama. The term "camel
antibody", as used herein, refers to an antibody or part of an
antibody derived from camel. The term "shark antibody", as used
herein, refers to an antibody or part of an antibody derived from
shark. Llama, camel and shark antibodies have an antigen binding
moiety that is built up by one single domain, V.sub.HH, (rather
than a V.sub.H and a V.sub.L chain).
[0335] The expression "T cell engaging domain", as used herein, is
meant to refer to a domain that specifically binds to an antigen
that is present on the cell surface of T cells. Preferably, binding
of said T cell engaging domain to said antigen activates said T
cell. Similarly, the expression "NK cell engaging domain" refers to
a domain that specifically binds to an antigen that is present on
the cell surface of Natural Killer cells. Preferably, binding of
said NK cell engaging domain to said antigen activates said Natural
Killer cells. The expression "domain engaging macrophage cells"
refers to a domain that specifically binds to an antigen that is
present on the cell surface of macrophage cells. Preferably,
binding of said domain engaging macrophage cells to said antigen
activates said macrophage cells. The expression "monocyte engaging
domain" refers to a domain that specifically binds to an antigen
that is present on the cell surface of monocytes. Preferably,
binding of said monocyte engaging domain to said antigen activates
said monocytes. The expression "granulocyte engaging domain" refers
to a domain that specifically binds to an antigen that is present
on the cell surface of granulocytes. Preferably, binding of said
granulocyte engaging domain to said antigen activates said
granuloctyes. The expression "domain engaging neutrophil
granulocytes" refers to a domain that specifically binds to an
antigen that is present on the cell surface of neutrophil
granulocytes. Preferably, binding of said domain engaging
neutrophil granulocytes to said antigen activates said neutrophil
granuloctyes. The expression "domain engaging activated neutrophil
granulocytes, monocytes and/or macrophages" refers to a domain that
specifically binds to an antigen that is present on the cell
surface of activated neutrophil granulocytes, monocytes and/or
macrophages. Preferably, binding of said domain engaging activated
neutrophil granulocytes, monocytes and/or macrophages to said
antigen activates said monocytes and/or macrophages.
[0336] The term "molecule capable of mediating bioluminescence", as
used herein, refers to a molecule (or functional part of a
molecule) that has an enzymatic activity which in the presence of
the appropriate substrate(s) catalyzes a reaction that causes
bioluminescence. The term includes luciferases, such as the
luciferases of firefly or Gaussia.
[0337] The term "GFP variant", as used herein, refers to a molecule
that has an amino acid sequence derived from the amino acid
sequence of green fluorescent protein from Aequorea victoria by
introducing alterations resulting in greater fluorescence or
fluoresce in different colors. The term is meant to include, among
others, YFP (yellow fluorescent protein), CFP (cyan fluorescent
protein), Venus (Nagai T et al., A variant of yellow fluorescent
protein with fast and efficient maturation for cell-biological
applications. Nat Biotechnol. 2002 January; 20(1):87-90), Cerulean
(Enhanced CFP with S72A, Y145A and H148D substitutions).
[0338] "Enhanced GFP" (and, analogously, "enhanced YFP", "enhanced
CFP") refers to a GFP (YFP, CFP) which has been "humanized", as
reported in Kain et al. (1995) Biotechniques 19(4):650-55.
"Humanized" refers to changes made to the GFP (YFP, CFP) nucleic
acid sequence to optimize the codons for expression of the protein
in human cells.
[0339] The term "bimolecular fluorescence complementation
molecule", as used herein, refers to a fluorescent molecule that
can be provided as two fragments which by themselves are not
fluorescent, but which upon heterodimerization between the two
fragments form a dimer that is capable of fluorescence.
[0340] The term "therapeutic compound", as used herein, refers to a
compound suited for preventing, treating, alleviating or curing a
disease or disease state. Preferably, a "therapeutic compound" is a
compound that, upon entry into a cell, is capable of causing the
death of that cell. In some embodiments, a therapeutic compound can
be a chemical or radioactive compound that damages vital cellular
structures or interrupts vital cellular processes.
[0341] The term "diagnostic compound", as used herein, refers to a
compound that can be detected by common detection methods, such as
methods used in the clinic or in biochemical or medical diagnostic
laboratories, for example a fluorescent compound, a radioactive
compound, or a molecule mediating bioluminescence.
[0342] The term "progenitor/precursor cells" is meant to refer to
immature, undifferentiated or partially differentiated cells that
are typically found in post-natal animals/humans and have the
potential to differentiate into a specific cell type or into
specific cell types. The term "progenitor/precursor cells of a
tumour" designates progenitor/precursor cells with altered
properties (e.g. regarding their proliferation behaviour or gene
expression pattern) that give rise to tumour cells. Examples for
such progenitor/precursor cells of a tumour are e.g. leukemic
precursor or progenitor cells.
[0343] The term "cancer", as used herein, refers to a malignant
cell, group of cells, or malignant neoplasia. The term is meant to
comprise carcinomas, sarcomas, lymphomas, leukemias, germ cell
tumours, and blastomas. A "cancerous cell" is a cell that is part
of or derived from a cancer. The term "tumour" is used
interchangeably with the term "cancer".
[0344] As used herein, the term "haematologic tumour" refers to a
cancer of the blood or blood building system (such as bone marrow
cells, blood-building cells, and precursor cells of mature blood
cells). In some embodiments, the term "haematologic tumour" refers
to a haematologic neoplasia. As used herein, the term
"non-haematologic tumour" refers to a tumour that is not a
haematologic tumour.
[0345] The term "a patient who is undergoing allogeneic tissue or
cell transplantation", as used herein, refers to a situation where
a patient receives or has received transplanted cells or
transplanted tissue that has/have been obtained from another
person. A preferred situation as to this aspect is the situation
with mismatched HLA antigens. The unit ".mu.g/m.sup.2", as used
herein in the context of an amount of a polypeptide administered,
refers to a certain amount of polypeptide per square meter of body
surface of the patient to whom said polypeptide is administered
(the peptide may be administered by any adequate route of
administration, such as by intravenous or subcutaneous injection).
For example, the expression "The amount of polypeptide administered
is 50 .mu.g/m.sup.2 per day for the polypeptide P1." is meant to
refer to a situation where the amount of polypeptide P1
administered per day is 50 .mu.g per square meter of body surface
of the patient to whom the polypeptide P1 is administered. In the
case of a patient having a body surface of 2 m.sup.2 this would
mean that 100 .mu.g of polypeptide P1 are administered per day.
[0346] The present inventors have surprisingly found that with a
set of polypeptides according to the invention the above-indicated
problems of the prior art can be overcome and the above-described
objects can be accomplished. Moreover, the present inventors have
surprisingly found that with a set of polypeptides according to the
invention, cells with a specific combination of two antigens can be
identified and/or eliminated with high specificity and reduced
side-effects.
[0347] It is one advantage of the combinatorial strategy of the
invention that no preformed F units (for example anti-CD3 units)
are used. The F1 and CD3 V.sub.H and V.sub.L) do not heterodimerize
per se, not even in the presence of an agent which stabilizes their
dimerization (for example an antigen capable to bind to the domain
F, like for example, CD3, HIS or DIG), and thus do not result in a
functional F domain (for example do not stimulate T cells).
Exclusively in situations where both complementary constructs P1
and P2 simultaneously bind on the surface of a given cell, the two
components F1 and F2 reconstitute the F domain (for example, the
CD3 binding site). Thus, function of the F domain (for example T
cell activation) takes place precisely where needed but not
systemically. Hence, it can be assumed that the combinatorial
strategy of the invention has less toxic effects, for example as
compared to normal bispecific antibody strategies. This is also
evidenced by the appended examples, in particular by the in vivo
model for allogeneic transplantation, where HLA-A2 positive mice
did not suffer any clinical effects after infusion of HLA-A2
reactive constructs.
[0348] In particular, to tag cells that express a predefined
antigen signature, two single-chain polypeptides were designed as
parts of the final bipartite (bi-molecular) construct
(bi-molecular/trispecific antibody construct), each composed of an
antigen-binding single-chain variable fragment (scFv) and either
the variable light (VL) or variable heavy chain (VH) domain of an
antibody. When these two hybrid fragments bind their respective
antigens on the surface of a single cell, the VL and VH domains
interact with each other to reconstitute the original antigen
binding site and thus fulfill the desired requirements.
[0349] As mentioned, it is one advantage of the set of polypeptides
of the invention that binding of both target antigens on the cell
surface is requisite for functional heterodimerization.
Self-assembly of the two complementary parts and subsequent T cell
stimulation after binding of only one arm to its antigen can be
ruled out, thus corroborating published data showing that V.sub.H
or V.sub.L binding by itself is of low affinity and that
V.sub.H/V.sub.L heterodimers tend to dissociate rapidly in the
absence of antigen (Colman, 1987, Nature 326, 358-363; Amit, 1986,
Science 233, 747-753; Law, 2002, Int Immunol 14, 389-400; Ueda,
1996, Nat Biotechnol 14, 1714-1718).
[0350] In contrast to the homo- or hetero-dimerization domains well
known in the art (leucine-zipper, Fc-domains, knob in the hole
etc), VH and HL interactions are of low affinity. However, it has
been shown that VH/VL interaction can be stabilized after binding
to the specific antigen. Without being bound by theory, VH/VL
interaction in accordance with this invention takes place only in
situations after both fragments have previously bound to their
cognate target antigens, for example on the surface of a target
cell. Also without being bound by theory, after simultaneous
on-target binding, the constructs are brought into close proximity
so that they can form a trimeric complex with the antigen. The thus
on-target complemented trispecific heterodimer of the invention is
functional with respect to the function of the domain F, for
example, engages and stimulates T cells for tumor cell destruction
if anti CD3 is reconstituted.
[0351] Beside one advantage of the constructs of the invention P1
and P2, e.g. the combinatorial nature of the immune response
elicited, it was surprisingly found in the context of this
invention that the bi-molecular construct with the disrupted F
domain, for example scFv-anti CD3, displays no off target
effects.
[0352] The set of polypeptides according to this invention, in
particular the polypeptides P1 and P2 comprised therein, have the
further advantage to be more stable and/or have an improved shelf
life (in particular at 4.degree. C.) as compared to conventional
bispecific constructs like BiTE constructs. These conventional
bispecific constructs tend to aggregate (in particular at 4.degree.
C.).
[0353] It is envisaged that the polypeptides of this invention P1
and P2, more particular of F1 and F2 as comprised therein, more
particular of the V.sub.H and V.sub.L which may be comprised
therein, due to their hydrophobic interface, are capable to bind
albumin. This leads to an improved retention time; i.e. longer
bioavailability in vivo but also in vitro, like, for example, in
serum or blood samples.
[0354] The set of polypeptides according to the present invention
comprises a first polypeptide P1 and a second polypeptide P2. The
first polypeptide P1 comprises a first targeting moiety T1 (which
is capable of specifically binding to an antigen A1) fused to a
first fragment F1 of a functional domain F (see FIG. 1A, top). The
second polypeptide P2 comprises a second targeting moiety T2 (which
is capable of specifically binding to an antigen A2) linked to a
second fragment F2 of the functional domain F (see FIG. 1A,
bottom). Importantly, the fragments F1 resp. F2 of the functional
domain are non-toxic by their own and unable to exert any
biological function unless there is partnering between the two
polypeptides P1 and P2. When both polypeptides P1 and P2
simultaneously bind to their antigens on the surface of a single
cell that expresses both antigens A1 and A2, the fragments F1 and
F2 of the functional domain F are brought together in close
proximity, they hetero-dimerize and thus complement the desired
biological function (see FIG. 1B). On the other hand, a cell that
expresses either only antigen A1 (FIG. 1C) or only antigen A2 (FIG.
1D) or none of the antigens does not cause complementation of the
biological function. Thus, the biological function is achieved with
high specificity only in the presence of cells having both antigens
A1 and A2 at their cell surface upon simultaneous binding of both
polypeptides P1 and P2 to such a cell. Depending on the nature of
the functional domain F, different objects, such as specific
identification/detection or elimination of cells that express both
antigens A1 and A2, can be accomplished.
[0355] In one exemplary embodiment, this inventive principle is
applied for the specific elimination of tumour cells:
[0356] Novel histopathological and flow cytometry analyses have
revealed that tumour cells can be detected and distinguished from
their non-transformed counterparts not by single surface markers
but by the expression of aberrant antigen combinations/profiles, as
is known for haematopoietic neoplasias and cancer and cancer stem
cells of various other provenience. Thus, while a single antigen
may not be sufficient to specifically identify a certain tumour
cell, a specific combination of two antigens may allow
discriminating the tumour cell from any other type of cell.
[0357] For example, the set of polypeptides according to the
invention may be used to specifically eliminate cancer cells
characterized by the simultaneous expression of the antigens CD33
and CD19 at their cell surface. This combination of antigens is
found on certain types of acute leukemia cells and distinguishes
these cells from any other cells (such as non-malignant cells),
which may carry either CD33 or CD19 at their cell surface, but do
not carry both CD33 and CD19 at their cell surface (Ossenkoppele et
al., Review of the relevance of aberrant antigen expression by flow
cytometry in myeloid neoplasms. Br J Haematol 2011,
153(4):421-36).
[0358] To specifically eliminate these leukemic cells carrying both
CD33 and CD19 at their cell surface, the first targeting moiety T1
of the first polypeptide P1 may be a single chain variable Fragment
(scFv) specific for CD33. As fragment F1 of the functional domain
F, the light chain variable domain V.sub.L of an anti CD3 antibody
may be chosen. The second targeting moiety T2 of the second
polypeptide P2 may be a scFv specific for CD19. As the fragment F2
of the functional domain F the heavy chain variable domain V.sub.H
of that anti CD3 antibody may be chosen. The light chain variable
domain V.sub.L and the heavy chain variable domain V.sub.H of the
anti CD3 antibody are each non-toxic by their own. They are also
unable to exert their biological function (i.e. to effectively bind
the CD3 antigen) unless there is partnering between the
polypeptides P1 and P2.
[0359] In the presence of a leukemic cell having both CD33 and CD19
at its cell surface, both polypeptides P1 and P2 simultaneously
bind to that cell. As a consequence, the fragments F1 and F2 of the
functional group F (i.e. the heavy and light chain of the Fv anti
CD3 variable domain of that anti-CD3 antibody) are brought together
in close proximity, they hetero-dimerize and thus complement the
desired biological function, enabling the dimer of P1 and P2 to
specifically bind to CD3.
[0360] CD3 is a cell surface molecule that is present on the
surface of T cells. The molecule is part of the T cell signaling
complex, and cross-linking of CD3 molecules on the surface of a T
cell after binding of a CD3-specific antibody leads to activation
of the T cell. By engaging CD3 antigens on the surface of T cells,
heterodimers of polypeptides P1 and P2 are capable of recruiting T
cells and activating them. As a result, typical effector mechanisms
of a cytotoxic T cell response are elicited, leading to cell lysis:
release of lytic granules containing the cytotoxic proteins
perforin, granzymes, and granulysin. Perforin forms pores into the
membrane of the target cell through which the granzymes can enter
and induce apoptosis. These effects lead to specific destruction of
leukemic cells that carry both CD33 and the CD19 antigen at their
cell surface.
[0361] Other cells than the leukemic cells do not have both the
CD33 and CD19 antigen at their cell surface. Therefore, they cannot
recruit both polypeptides P1 and P2, and no complementation of the
CD3 binding capability and engagement of CD3 positive T lymphocytes
is achieved. Consequently, other cells besides the leukemic cells
are unaffected, and destruction of the malignant cells with
exquisite specificity is achieved.
[0362] This is in stark contrast to conventional bispecific
antibodies. A conventional bispecific construct that engages T
cells and has specificity for cells expressing CD33 would mediate
the destruction of all CD33 positive cells. Since CD33 is myeloid
lineage marker which is expressed on many myeloid cells and myeloid
progenitor cells, the destruction of these cells would result in
long lasting aplasia and probably death of the patient. A
conventional bispecific construct that engages T cells and has
specificity for CD19 positive cells would lead to the elimination
of all cells carrying the CD19 antigen at their cell surface. CD19
is expressed on a significant subset of B-lymphocytes. Destruction
of these cells would lead to a severe defect of the immune system.
Thus, besides eliminating leukemic cells that simultaneously
express CD33 and CD19 on the surface, the application of
conventional bispecific antibodies with specificity for CD33 and
CD19 would lead to elimination of myeloid cells and a substantial
subset of B-lymphocytes.
[0363] Thus, while conventional bispecific antibodies recognize
only one antigen on the cell to be eliminated, effector activation
according to the present invention requires the simultaneous
recognition of two specific antigens on the surface of the cell to
be identified/eliminated. In consequence, the present invention
achieves significantly improved specificity and reduced side
effects.
[0364] It is clear to a person of skill in the art that, within the
principle of the present invention, diverse variations to the
exemplary embodiment described above are possible.
[0365] For example, the approach described in the above exemplary
embodiment can easily be adapted for the identification/elimination
of other types of tumour cells besides CD33 and CD19 positive acute
leukemia cells simply by choosing appropriate targeting moieties T1
and T2 that specifically bind to antigens A1 and A2, respectively,
that are present simultaneously on the cells to be
identified/eliminated, but not present simultaneously on other cell
types. As quoted above, many if not all cancer cells (but also
progenitor/precursor cells of cancer cells) express a number of
cell surface molecules which per se are widely expressed on normal
tissues, but are indicative for the malignant phenotype if
expressed in a non-physiological combination. For example, CD34 is
a marker for haematopoietic stem cells and CD7 can be detected on a
subset of lymphoid cells. The combination of CD34 and CD7, however,
is strongly associated with malignancy, and aberrant co-expression
of the two antigens can be detected on a substantial proportion of
acute myelogenous leukemias (Ossenkoppele et al., Review of the
relevance of aberrant antigen expression by flow cytometry in
myeloid neoplasms. Br J Haematol 2011, 153(4):421-36). Similarly,
aberrant co-expression of CD44 and CD117 has been described for
ovarian cancer stem cells, CD44 and CD24 for pancreas cancer
initiating cells and the combination of EpCAM and CD44 in colon and
breast cancer stem cells (Natasha Y. Frank, Tobias Schatton, Markus
H. Frank; The therapeutic promise of the cancer stem cell concept.
J Clin Invest. 2010; 120:41-50). Expression of CD24 and CD29, as
well as CD24 and CD49f has been found to be specific for breast
carcinoma (Vassilopoulos A et al. Identification and
characterization of cancer initiating cells from BRCA1 related
mammary tumours using markers for normal mammary stem cells. Int J
Biol Sci 2008; 4:133-142). Moreover, combinations with highly
expressed antigen levels are indicative for a number of
malignancies, like CD38 and CD138 for myeloma.
[0366] In addition to the cancer-specific antigen combinations
listed above and those known from the scientific literature,
additional combinations of two antigens that are expressed
simultaneously on specific tumour cells but not on other cells can
be derived in a straight-forward manner by the person of skill in
the art.
[0367] Firstly, the skilled person may arrive at an antigen
combination that is specific for a certain cancer by combining an
antigen that is specific for the malignant state of the respective
cell type with an appropriate cell type marker or cell lineage
marker. For example, carbonic anhydrase IX is a marker strongly
associated with renal cell carcinoma and metastases of renal cell
carcinoma and thus represents a marker for the malignant state of
renal cells. This membrane located marker, however, is also
expressed on normal cells of the intestinal tract. By selecting as
second antigen a renal lineage marker like aquaporin, the resulting
combination of two antigens is specific for renal cell carcinoma
cells and cells resulting from metastasis of renal cell carcinoma,
while neither non-malignant kidney cells (which do not express
carbonic anhydrase IX) nor cells from the intestinal tract (which
do not express aquaporins) are characterized by the selected pair
of antigens.
[0368] Detailed information on markers for the malignant state of
various cell types and on markers for numerous cell types or cell
lineages is available from the literature and web-based resources
(see below for details) or can be obtained by straight-forward
experimentation (see below).
[0369] Examples for markers for the malignant state of a cell
include: E-cadherin for epithelial cells and ductal-type breast
carcinoma cells; Ca-125 for Epitheloid malignancies and ovary
cancer cells, adenocarcinoma cells and breast cancer cells;
Her-2/neu for breast cancer cells; gross cystic disease fluid
protein (BRST-2 protein) for breast cancer cells; BCA-225 (breast
carcinoma associated glycoprotein) for lung and breast cancer
cells; CA 19-9 (carbohydrate antigen 19-9) for pancreas, bile duct
and intestinal tract cancer cells; CEA for colorectal cancer cells;
CD117 (c-kit) for gist (gastrointestinal stromal tumour) cells (and
myeloid and mast cells); CD30 for Reed-Sternberg cells (and Ki-1
activated T-cells and B-cells); Epithelial antigen (BER-EP4),
Epithelial membrane antigen, and Epithelial Related Antigen
(MOC-31) for epithelial cancer cells; Epidermal growth factor
receptor (HER1) for cells of various cancers; Platelet derived
growth factor receptor (PDGFR) alpha for cells of various cancers;
Melanoma associated marker/Mart 1/Melan-A for melanoma cells; CD133
for cancer stem cell populations and others; TAG 72 (tumour
associated gp 72) for adenocarcinoma cells.
[0370] Further examples for markers for a malignant state of a
cell/cells include: EpCAM, CD19, HER-2, HER-3, HER-4, PSMA, MUC-1
(mucin), MUC2, MUC3, MUC4, MUC5AC, MUC5B, MUC7, Lewis-Y, CD20,
CD33, CD44v6, Wue-1, Plasma Cell Antigen, (membrane-bound) IgE,
Melanoma Chondroitin Sulfate Proteoglycan (MCSP), STEAP,
mesothelin, Prostate Stem Cell Antigen (PSCA), sTn (sialylated Tn
antigen), FAP (fibroblast activation antigen), EGFRvIII, Ig.alpha.,
Ig.beta., MT-MMPs, Cora antigen, EphA2, L6 and CO-29, CCR5,
.beta.HCG, ganglioside GD3, 9-O-Acetyl-GD3, GM2, Globo H, fucosyl
GM1, Poly SA, GD2, Carboanhydrase IX (MN/CA IX), Sonic Hedgehog
(Shh), CCR8, TNF-alpha precursor, A33 Antigen, Ly-6, desmoglein 4,
E-cadherin neoepitope, Fetal Acetylcholine Receptor, CD25,
Muellerian inhibitor Substance (MIS) Receptor type II, endosialin,
SAS, CD63, TF-antigen, CD7, CD22, Ig.alpha. (CD79a), Ig.beta.
(CD79b), G250, gp100, F19-antigen and EphA2.
[0371] Examples for antigens that are specific for a certain cell
type/cell lineage or for a few cell types/cell lineages (cell type
markers/cell lineage markers) include: CD45 for hematopoietic
cells; CD34 for endothelial cells, stem cells, and stromal cells;
CD33 for myeloid cells; CD138 for plasma cells and a subset of
epithelial cells; CD15 for epithelial, myeloid, and Reed-Sternberg
cells; CD1a for cortical thymocytes and Langerhans cells; CD2 for
thymic cells, T-cells, and Natural Killer (NK) cells; CD3 for
T-cells; CD4 for helper T-cells; CD5 for T-cells, a subset of
B-cells, and thymic carcinoma cells; CD8 for cytotoxic T-cells;
CD20 for B-cells; CD23 for activated B-cells; CD31 for endothelial
cells; CD43 for T-cells, myeloid cells, a subset of B-cells,
histiocytes, and plasma cells; CD56 for NK cells; CD57 for
neuroendocrine cells, and NK cells; CD68 for macrophages; CD79a for
B-cells and plasma cells; CD146 for the endothelial cell lineage;
surfactant proteins for lung cells; synaptophysin, CD56 or CD57 for
neuroendocrine cells; nicotinic acetylcholine receptor or
muscle-specific kinase (MUSK) for muscle cells; voltage-gated
calcium channel (P/Q-type) or voltage-gated potassium channel
(VGKC) or N-methyl-D-aspartate receptor (NMDA) for muscle cells and
neurons; TSH (thyroid stimulating hormone) receptor for thyreoid
gland; amphiphysin for muscle cells; HepPar-1 for hepatocytes;
ganglioside GQ1B, GD3 or GM1 for neuronal cells; and glycophorin-A
for cells of the erythropoietic cell lineage.
[0372] It should be noted that there are situations where it may be
advantageous to rely for the purposes of the present invention on
an antigen with a less than perfect specificity for the cell type
or cell lineage of interest. For example in situations where no
antigen is known that is found exclusively on the cell type/cell
lineage of interest and not on any other cell types/lineages or in
situations where it is not possible to confirm the exclusive
specificity of an antigen, also antigens that are present on one or
more other cell types/cell lineages besides the cell type/cell
lineage of interest may be considered. Similar consideration apply
for markers for the malignant state of a cell, or even for the
specificity of the combination of two antigens. Thus, there are for
example situations where for the purposes of the present invention
a combination of two antigens is selected that is specific not only
for the cells of interest, but also for one or more (a few) other
cell types/cell lineages/kinds of malignant cells.
[0373] Secondly, the skilled person may arrive at an antigen
combination that is specific for a certain cancer by
straightforward experimentation. This may comprise the steps of (1)
determining the surface antigens on the tumour cells to be
eliminated and (2) identifying among these tumour cell surface
antigens two antigens that are not present simultaneously on other
cell types (or, in some embodiments, present on only a few other
cell types).
[0374] Often, experimentation may not be necessary to determine the
surface antigens on tumour cells to be eliminated, because such
information may already be available for the respective type of
cancer from the printed literature (see, e.g. David J. Dabbs,
Diagnostic immunohistochemistry, Churchill Livingstone, 3rd edition
(2010); or F Lin and J Prichard, Handbook of Practical
Immunohistochemistry: Frequently Asked Questions, Springer, New
York, 1st edition (2011)). Even more extensive information is
available through web-based resources. For example, the Cancer
Genome Anatomy Project (CGAP) of the U.S. National Cancer Institute
(NCI) has systematically determined the gene expression profiles of
various normal, precancer, and cancer cells (Strausberg R L. The
Cancer Genome Anatomy Project: building a new information and
technology platform for cancer research. In: Molecular Pathology of
Early Cancer, 1999, (Srivastava, S., Henson, D. E., Gazdar, A.,
eds. IOS Press), pp. 365-370). The resources generated by the CGAP
initiative are freely available (http://cgap.nci.nih.gov/) and
include access to all CGAP data and the necessary analysis tools.
Similarly, the Cancer Genome Characterization Initiative (CGCI) of
the National Cancer Institute focuses on tools for characterizing
the genomic changes involved in different tumours, for example
genomic characterization methods including exome and transcriptome
analysis using second generation sequencing. The data generated by
CGCI is available through a publicly accessible database
(http://cgap.nci.nih.gov/cgci.html). Thus, in many cases
information about the presence or absence of various known cell
surface proteins on the tumour cells of interest can be derived by
simply checking these publicly accessible databases. If desired,
this information may then be verified in a second step by
immunocytochemical/immunohistochemical analysis of tumour
cells/tissue according to the methods described below.
[0375] If there is no information available on the proteins
expressed by the tumour cells/tissue of interest, the skilled
person can carry out a characterization of the antigens on the
tumour cells/tissue by immunocytochemical/immunohistochemical
methods with a panel of antibodies (see, e.g., "Handbook of
Practical Immunohistochemistry: Frequently Asked Questions" by F
Lin and J Prichard, Springer New York, 1st edition (2011); or
"Using Antibodies: A Laboratory Manual" by E Harlow and D Lane,
Cold Spring Harbor Laboratory Press (1998)). In brief, a
histological preparation or cells isolated from the tumour are
incubated with a first antibody directed at a potential surface
antigen and, after a washing step, incubation of a second antibody
directed against the Fc domain of the first antibody. This second
antibody is labelled with a fluorophore or an enzyme like HRP
(horse radish peroxidase), in order to visualize expression of the
targeted antigen. Panels of antibodies that can be used for high
throughput antigen profiling purposes of cell surface antigens are
commercially available from numerous manufacturers.
[0376] In addition, tools specifically dedicated to high throughput
proteomic cell characterization to identify and analyze cell
surface protein expression are commercially available, such as the
FACS (Fluorescence-activated cell sorting)-based high throughput
array technology BD FACS.TM. CAP (Combinational Antibody Profile)
of Becton, Dickinson & Company.
[0377] The immunocytochemical/immunohistochemical/proteomic
analysis described above may be preceded (or, in some cases,
replaced) by genome-wide gene expression profiling of tumour cells
or by mass spectrometric analysis of the proteins expressed by the
tumour cells/tissue of interest. For example, genome-wide gene
expression profiling of tumour cells can be carried out to check
for the expression of various cell surface molecules, and the
presence of such antigens on the cell surface of the tumour cells
may then be confirmed through antibody-based staining methods as
described above.
[0378] Further information about approaches to characterize the
surface antigens of (cancer) cells is available in the relevant
scientific literature (e.g. Zhou J, Belov L, Huang P Y, Shin J S,
Solomon M J, Chapuis P H, Bokey L, Chan C, Clarke C, Clarke S J,
Christopherson R I. Surface antigen profiling of colorectal cancer
using antibody microarrays with fluorescence multiplexing. J
Immunol Methods. 2010; 355:40-51; or Carter P, Smith L, Ryan M.
Identification and validation of cell surface antigens for antibody
targeting in oncology. Endocr Relat Cancer. 2004; 11:659-87).
[0379] In a next step, the skilled person may identify among the
cell surface antigens of the tumour cells a combination of two
antigens which is not expressed simultaneously on other cell
types.
[0380] Often, already the literature or publicly available
databases may provide detailed information about the presence or
absence of antigens from other cell types:
[0381] The expression of various cell surface molecules on diverse
cell types has been studied systematically by researchers in the
past decades by immunophenotyping and gene expression profiling of
almost any cell type of the body. For example, detailed information
on the expression of more than 360 "cluster of differentiation"
antigens (or CD antigens) is available in print (e.g. "Leukocyte
and Stromal Cell Molecules: The CD Markers" by Zola H, Swart B,
Nicholson I, and Voss E; John Wiley & Sons, 1st ed. (2007)) and
in online depositories (e.g.
www.hcdm.org/MoleculeInformation/tabid/54/Default.aspx), and
includes information on tissue distribution and expression levels
of antigens, as well as information about antigen reactive
antibodies and the epitopes these antibodies bind to.
[0382] Moreover, there are publicly available databases which
provide access to a large amount of genomic data generated by the
scientific community. For example, the Gene Expression Omnibus
(GEO) platform of the National Center for Biotechnology Information
(NCBI) of the United States (Barrett T et al., NCBI GEO: archive
for functional genomics data sets--10 years on. Nucleic Acids Res.
2011; 39(Database issue):D1005-10) archives and gives access to an
enormous collection of microarray, next-generation sequencing, and
other forms of high-throughput functional genomic data, and further
provides web-based interfaces and applications for easy access to
this information (http://www.ncbi.nlm.nih.gov/geo/).
[0383] Once a pair of two antigens has been identified through
these resources that appears to be absent from other cell types
besides the tumour cells of interest, a person skilled in the art
can easily validate the suitability of the antigen combination for
further development of P1 and P2-polypeptide constructs. Such
validation that the identified combination of two antigens is
indeed not expressed simultaneously on other cell types besides the
tumour cells can be carried out by
immunohistochemical/immunocytochemical analysis of a (optimally
large) collection of assorted cell types and/or tissues with
antibodies against the two antigens. Cells and tissues of any kind
can be obtained from ATCC (American Type Culture Collection), from
pathology departments and from tissue banks associated with
universities and research institutions. A suitable antigen
combination is defined as a pair of antibodies that stains
exclusively the tumour cells, but not healthy tissues or healthy
cells (i.e. both antibodies of the pair stain the tumour cells, but
no other tissues/cells are stained by both antibodies).
[0384] It should be noted that, while in many situations the
highest degree of specificity (preferably absolute specificity) is
of course desirable, there are situations where a lower degree of
specificity is acceptable. For example, if the set of polypeptides
is used for diagnostic purposes, some degree of crossreactivity
with other cell types or tissues may be acceptable (especially in
the case of solid tumours, since the additional positional
information helps to distinguish tumour cells from crossreacting
cells). Moreover, if the set of polypeptides is used for
therapeutic purposes, some degree of crossreactivity with other
cell types or tissues may also be acceptable, depending on the
severity the disease in a treated patient and on the cell
types/tissues affected by the crossreactivity. Other situations
where a lower degree of specificity may be acceptable may arise in
the context of a transplantation setting (see below).
[0385] In cases where no hint about a suitable antigen combination
can be derived from the literature or public databases, the
presence/absence of the cell surface antigens of the tumour cells
from other cell types can be checked by straightforward
experimentation. To this end, a variety of cell types and/or
tissues obtainable from the sources indicated above may be
subjected to proteomic cell characterization,
immunocytochemical/immunohistochemical analysis and/or gene
expression profiling. (It should be noted that such analysis of
non-tumour cells/tissues has to be carried out only once in order
to obtain data that can be used for the design of various
constructs according to the invention that may be adapted to
diverse different therapeutic or diagnostic situations.) Upon
comparison of the obtained results with the information about cell
surface antigens of the tumour cells of interest, a combination of
two antigens that is not present on any other cells besides the
tumour cells of interest can be easily identified.
[0386] A similar systematic approach to identify a pair of two
antigens that is specific for tumour cells is also described in a
recent publication by Balagurunathan, which relies on genome-wide
gene expression profiling followed by immunohistochemistry
(Yoganand Balagurunathan, Gene expression profiling-based
identification of cell-surface targets for developing multimeric
ligands in pancreatic cancer. Mol Cancer Ther 2008; 7. 3071-3080).
Using DNA microarrays, the authors of that manuscript generated
databases of mRNA gene expression profiles for a substantial number
of pancreatic cancer specimens and normal tissue samples. The
expression data for genes encoding cell-surface molecules were
analyzed by a multivariate rule-based computational approach in
order to identify gene combinations that are preferentially
expressed on tumour cells but not in normal tissues. Aberrant
co-expression of antigens constituting a tumour-specific antigen
combination was then confirmed using standard immunohistochemistry
techniques on pancreatic tumour tissue and normal tissue
microarrays.
[0387] Having identified and validated such a combination of
antigens that is specific for the tumour cells of interest, the
constructs of polypeptide P1 and polypeptide P2 can be engineered
by standard protein engineering techniques and methods of molecular
biology (see, e.g. G Howard and M Kaser, Making and Using
Antibodies: A Practical Handbook, CRC Press, 1st edition (2006);
Sambrook et al., Molecular Cloning: A Laboratory Manual, Cold
Spring Harbor Laboratory Press, New York (2001)).
[0388] For many cell surface molecules, specific monoclonal
antibodies are characterized and therefore readily available. Thus,
in many cases the skilled person may have access to hybridoma cells
of monoclonal antibodies that are specific for the antigens of the
identified combination of antigens. Having the option to choose
from a panel of antibodies specific for a given antigen, a person
skilled in the art may choose a reactive antibody which binds an
epitope close to the membrane, in order to minimize the distance of
the antigen expressing cell from the effector cell (Bluemel C,
Hausmann S, Fluhr P, Sriskandarajah M, Stallcup W B, Baeuerle P A,
Kufer P. Epitope distance to the target cell membrane and antigen
size determine the potency of T cell-mediated lysis by BiTE
antibodies specific for a large melanoma surface antigen. Cancer
Immunol Immunother. 2010 August; 59(8):1197-209). If no such
antibody is available against one or both antigens of the
identified combination of antigens, monoclonal antibodies against
the antigens can be generated by standard techniques (e.g. G Howard
and M Kaser, Making and Using Antibodies: A Practical Handbook, CRC
Press, 1st edition (2006)). Moreover, various companies offer full
services for the generation of custom-made monoclonal antibodies
and hybridoma cells.
[0389] DNA or mRNA coding for the variable domains of the
monoclonal antibodies of interest can be obtained from hybridomas
by PCR amplification or cloning (Orlandi R, Gussow P T, Jones:
Cloning immunoglobulin variable domains for expression by the
polymerase chain reaction. Proc Natl Acad Sci USA 1989,
86(10):3833-3837; Wang Z, Raifu M, Howard M, Smith L, Hansen D,
Goldsby R, Ratner D: Universal PCR amplification of mouse
immunoglobulin gene variable regions: the design of degenerate
primers and an assessment of the effect of DNA polymerase 3' to
5'exonuclease activity. J Immunol Methods 2000, 233(1-2):167-177;
Essono S, Frobert Y, Grassi J, Cremino C, Boquet D: A general
method allowing the design of oligonucleotide primers to amplify
the variable regions from immunoglobulin cDNA. J Immunol Methods
2003, 279:251-266; G Howard and M Kaser, Making and Using
Antibodies: A Practical Handbook, CRC Press, 1st edition (2006)) or
from already established vectors comprising the DNA sequence of the
variable fragment of the respective antibody. Often, the sequence
can be extracted from public databases, where many sequences are
deposited, and then the construct may even be generated by gene
synthesis as it is offered by various commercial service providers
(e.g. Creative Biolabs, Shirley, USA).
[0390] To form the construct of polypeptide P1, the sequence coding
for the variable fragment Fv of an antibody specific for the first
antigen of the identified pair of antigens (or, optionally, the
sequence of a single chain variable fragment derived from that
sequence) is used for the first targeting moiety (T1) and linked
via a suitable linker (coding, e.g., for less than 12 aa) to a
sequence coding for the first fragment F1 of a functional domain
(e.g. the V.sub.L domain of an anti CD3 antibody). Likewise, to
form the construct of polypeptide P2 the sequence coding for the
variable fragment Fv of an antibody specific for the second antigen
of the identified pair of antigens (or, optionally, the sequence of
a single chain variable fragment derived from that sequence) is
used for the second targeting moiety (T2) and linked via a suitable
linker to a sequence coding for the second fragment F2 of that
functional domain (e.g. the V.sub.H domain of an anti CD3
antibody).
[0391] For any construct of a polypeptide P1 or P2 according to the
invention, modifications to the construct or to the sequences used
for forming the construct are considered in order to adapt the
construct to specific needs. For example, a construct can be
modified in a way that reduces or abolishes its immunogenicity in
humans. In case a sequence is derived from a non-human parent
antibody, such as a murine antibody, modifications to the sequence
can be carried out that result in a reduced immunogenicity in
humans while retaining or substantially retaining the
antigen-binding properties of the parent antibody (known to the
skilled person as "humanizing" an antibody/construct).
[0392] Various modifications of the above-described procedure and
adaptions in order to accommodate the embodiments and variations
described in this application are evident to the person of skill in
the art.
[0393] In addition to variations with respect to the antigens that
the targeting moieties T1 and T2 specifically bind to, various
other modifications are possible. For example, instead of single
chain variant fragments (scFv) as targeting moiety T1 and/or T2
other types of monovalent antibodies or antibody-like structures
can be employed. For example, an antibody/antibody-like structure
derived from a llama, camel or shark antibody can be used. Since
llama, camel and shark antibodies have an antigen binding moiety
that is built up by one single domain (rather than a V.sub.H and a
V.sub.L chain), the resulting polypeptide P1 or P2 is much smaller
and may thus better penetrate into tumour tissues.
[0394] Furthermore, since many tumour-relevant antigens are cell
surface-bound receptors, the single chain Fv of targeting moiety T1
and/or T2 can be replaced by the natural or artificial ligand of
such a cell surface-bound receptor. Like antibodies, these natural
or artificial ligands confer excellent specificity towards the
target receptor. Alternatively, the targeting moiety T1 and/or T2
can be an aptamer.
[0395] Moreover, in order to enhance binding affinity of a
targeting moiety towards the antigen, the targeting moiety can be
multimerized and/or altered by glycosylation or other types of
posttranslational or chemical modification or be optimized through
site directed mutagenesis or a phage display selection process.
[0396] Moreover, the fragments F1 and F2 (i.e. the V.sub.L and
V.sub.H fragments of anti CD3 Fv in the above-described exemplary
embodiment) can be replaced by fragments of a different functional
domain F, resulting in a different biological effect upon
complementation of the two fragments. By using fragments of anti
CD56, anti CD1a, or anti CD16a, natural killer cells can be
recruited and activated. By using fragments of anti CD16, natural
killer cells, neutrophil polymorphonuclear leukocytes, monocytes
and macrophages can be recruited and activated. By using fragments
of anti CD32a, anti CD32b, anti CD89, anti CD16a, or anti CD64,
macrophages can be recruited and activated. By using fragments of
anti CD32a, anti CD32b, anti CD64, or anti CD89, monocytes can be
recruited and activated. By using fragments of anti CD16b, anti
CD89, anti CD32a, anti CD32b, or anti CD64, granulocytes can be
recruited and activated. Moreover, alternatively to anti CD3, T
cells can also be recruited and activated by using fragments of
anti CD2, anti CD5, anti CD28, or anti TCR (T cell receptor).
Further information or additional options regarding the recruitment
and activation of effector cells through antibody binding are
available from the published literature, e.g. "Bispecific
Antibodies" by Roland E. Kontermann (editor), Springer Berlin
Heidelberg; 1st Edition. (2011).
[0397] An additional option is to use a set of polypeptides P1 and
P2 with fragments F1 and F2 of a functional domain F that binds an
antigen on an effector cell upon complementation of the two
fragments, but wherein binding to this antigen of the effector cell
does not cause activation of said effector cell. This set of
polypeptides ("first set of polypeptides") is then used (e.g.
administered to a patient) in combination with a second set of
polypeptides with fragments of a functional domain F that upon
complementation binds to a second, different antigen on the same
effector cell, but wherein again binding to this antigen of the
effector cell does not cause activation of the effector cell. The
antigens to which the first and the second sets of polypeptides
bind are chosen in a way that, while binding of only one of the two
antigens on the effector cells does not result in activation of the
effector cell, binding of both antigens on the effector cell
simultaneously leads to activation of the effector cell. This has
the advantages that (1) antigens on effector cells can be used that
do not function individually, but require costimulation of a second
antigen, and (2) the number of different antigens that dictates the
specificity with which a certain cell (such as a cancer cell) is
differentiated from other cells can be increased from two (if the
first and second set of polypeptides have the same targeting
moieties T1 and T2, respectively) to up to four different antigens
(if the first and second set of polypeptides have no targeting
moiety in common).
[0398] Similar effects may be achieved with two sets of
polypeptides with different targeting moieties, but the same
functional domain: These sets of polypeptides are designed to have
a functional domain directed against an effector cell antigen that
normally allows each set of polypeptides by itself to activate the
effector cell. However, both sets of polypeptides are used in a
concentration that is just too low to cause efficient effector cell
activation. If both sets of polypeptides are present simultaneously
(e.g. upon simultaneous administration to a patient) each set of
polypeptides by itself is not capable of activating the effector
cell (due to its low concentration), while the combination of both
sets of polypeptides is (because the effects of the two sets of
polypeptides act synergistically and thus the sum of the effects
caused by the two sets of polypeptides is sufficient to activate
the effector cell).
[0399] As another alternative to recruitment/activation of effector
cells, a "pretargeting" approach can be pursued, as it is well
established for bispecific antibody constructs (Cancer Imaging and
Therapy with Bispecific Antibody Pretargeting. Goldenberg D M,
Chatal J F, Barbet J, Boerman O, Sharkey R M. Update Cancer Ther.
2007 March; 2(1):19-31). To this end, F1 and F2 are substituted by
V.sub.H and V.sub.L fragments of an antibody specific for an
antigen, a carrier molecule (i.e. a molecule/part of a molecule
that is not recognized as foreign by the immune system of the
patient to whom said set of polypeptides is administered or a
molecule that causes no or only a weak immune reaction by a patient
to whom it is administered) or an affinity tag. Subsequently (or
simultaneously) to administering the polypeptides P1 and P2, a
therapeutic or diagnostic compound coupled to said antigen, carrier
molecule or affinity tag is administered. Only cells which carry
both the antigens A1 and A2 at their surface are bound by both
polypeptide P1 and polypeptide P2. Consequently, only at these
cells functional complementation leads to generation of a binding
site capable of recruiting the therapeutic or diagnostic compound
through said antigen, carrier molecule or affinity tag. This
approach allows exclusive addressing of target cells combined with
the possibility of precise administration and dosing of therapeutic
compounds like toxins or radioactive substances or diagnostic
compounds, while cells that do not express the antigens or do
express only one of the antigens are not affected.
[0400] A suitable carrier molecule may for example be a peptide or
a carbohydrate molecule. Preferably, the carrier molecule may be
gelatine, dextrane, or hydroxyethyl starch, which are common plasma
expanders that are metabolically inert, remain in the blood and
are, if they are small enough, renally eliminated. Alternatively,
the carrier molecule may be inulin, a metabolically inert molecule
that is used routinely in the clinic for determination of
glomerular clearance (and, in addition, antibodies exist that
specifically recognize inulin). A suitable affinity tag may be, for
example, a Flag-tag, a myc-tag, a glutathione-S-transferase
(GST)-tag, a hemagglutinin (HA)-Tag, a polyhistidine (His)-tag, or
a maltose binding protein (MBP)-tag, a digoxigenin (DIG)-tag.
[0401] The therapeutic compound coupled to the antigen, carrier
molecule or affinity tag may for example be a radioactive compound
or a toxin.
[0402] Suitable radioactive compounds are for example compounds
comprising .sup.90Y, .sup.177Lu, .sup.131I, .sup.32P, .sup.10B, or
.sup.213Bi. Recruitment of the antigen, carrier molecule or
affinity tag linked to the radioactive compound to cells that
express both the first and the second antigen leads to accumulation
of radioactivity onto the tumour site, resulting in specific
destruction of tumour cells/tissue.
[0403] Alternatively, the therapeutic compound coupled to the
antigen, carrier molecule or affinity tag may for example be a
toxic compound that is not able to cross the cell membrane without
prior binding to the cell surface.
[0404] This prerequisite is fulfilled by the A components of
classical AB-toxins derived from a number of pathogenic bacteria
like Clostridium perfringens, C. botulinum, C. difficile, B.
anthracis and others. AB-toxins are two-component protein complexes
that interfere with internal cell functions. The A component is the
"active" component (i.e. it kills a cell upon membrane
penetration), but is not able to cross the cell membrane on its
own. The B component is the "binding" component that by itself is
non-toxic, but is essential for uptake and membrane penetration of
component A.
[0405] For example, Bacillus anthracis protective antigen (PA) is a
classical toxin B component which mediates the uptake of the actual
anthrax exotoxins edema factor and lethal factor (LF). LF without
the PA-component is non-toxic since LF by its own does not
penetrate membranes and thus cannot execute its pathogenic
capabilities (Pezard C, Berche P, Mock M. "Contribution of
individual toxin components to virulence of Bacillus anthracis"
1991 Infect. Immun. 59 (10): 3472). However, when bound to cell
surface molecules, LF is internalised and highly toxic to the
cell.
[0406] Upon dimerization of the polypeptides P1 and P2, the
function of the functional domain F is reconstituted. Through
interaction of the reconstituted functional domain with the
antigen, carrier molecule or affinity tag coupled to the toxin, the
toxin is recruited to the cell membrane of the target cells,
incorporated into the cells and kills the cells.
[0407] This principle is easily adapted to the purposes of the
invention by the skilled person, since it is already widely used in
so called immunotoxins, where a targeting moiety, mostly an
antibody-like domain or natural ligand, is coupled to the toxin
component (see, e.g., Immunotoxins for targeted cancer therapy.
Kreitman R J, AAPS J. 2006 Aug. 18; 8(3):E532-51). Examples include
immunotoxins based on diphtheria toxin (such as Denileukin diftitox
(U.S. trade name Ontak) which has been approved by FDA for the
treatment of some T cell lymphomas) or based on B. anthracis Lethal
Factor (Pastan I, Hassan R, FitzGerald D J, Kreitman R J (2007).
"Immunotoxin treatment of cancer". Annu. Rev. Med. 58: 221-37).
Suitable A components of AB-toxins may for example be B. anthracis
edema factor, B. anthracis lethal factor, C. perfringens iota
toxin, C. botulinum C2 toxin, C. difficile ADP-ribosyltransferase
C. diphtheriae diphteria toxin fragment A.
[0408] Alternatively, the therapeutic compound may for example be a
cytotoxic compound that is toxic upon entry into a cell and that is
capable of crossing the cell membrane by itself without prior
binding to the cell surface. In this case, the antigen, carrier
molecule or affinity tag that the therapeutic compound is coupled
to is selected such that it prevents the resulting conjugate (i.e.
the therapeutic compound linked to the antigen/carrier
molecule/affinity tag) from crossing cell membranes and entering
cells without prior binding of the conjugate to the cell surface (a
suitable carrier molecule may for example be a hydroxyethyl starch
carrier). Thus, such a conjugate does not enter cells without prior
binding to their cell surface; once such a conjugate binds to the
cell surface, however, it is internalized into the cell and the
toxic compound kills the cell. The conjugate does not bind to
cells, unless it is recruited in the presence of the inventive set
of polypeptides to cells that simultaneously express both antigens
A1 and A2 at their cell surface. Such cells bind and recruit both
polypeptides P1 and P2, and the reconstituted functional domain
specifically binds to and recruits the antigen/carrier
molecule/affinity tag which, in turn, results in internalization of
the therapeutic compound. In consequence, a specific killing of
cells that carry both antigens A1 and A2 at their cell surface is
accomplished. Cytotoxic compounds that may be used in this context
include e.g. auristatin, ricin, saponin, bryodin 1, bouganin,
gelonin, pokeweed antiviral protein (PAP), antifolates, vinca
alkaloides, anthracyclines, calicheamicin, ribonuclease, abrin,
modeccin, or Listeriolysin O.
[0409] The diagnostic compound coupled to the antigen, carrier
molecule or affinity tag may for example be a radioactive compound,
a fluorophore, or a compound capable of mediating
bioluminescence.
[0410] Suitable radioactive compounds are for example compounds
comprising .sup.99mTc, .sup.82Rb or .sup.201Tl. Such compounds are
detected by well-known medical imaging procedures in the
clinic.
[0411] Alternatively, a fluorescent compound may be used as
diagnostic compound, such as GFP (green fluorescent protein) or a
GFP variant (e.g. BFP (blue fluorescent protein), CFP (cyan
fluorescent protein), or YFP (yellow fluorescent protein)), or a
fluorescent small-molecule compound like FITC (fluorescein
isothiocyanate) or PE (phycoerythrin), alexa fluor dyes (such as
AlexaFluor488 and related dyes sold by Molecular Probes, e.g.) or
cyanine dyes (such as Cy3 (Indocarbocyanine) or Cy5
(Indodicarbocyanine) or related dyes).
[0412] Alternatively, a compound capable of mediating
bioluminescence may be used as diagnostic compound, such as a
luciferase, for example Gaussia luciferase (Chopra A. Gaussia
princeps luciferase. In: Molecular Imaging and Contrast Agent
Database (MICAD) [database online]. Bethesda (Md.): National
Library of Medicine (US), NCBI; 2004-2012. Available from:
http://micad.nih.gov.). The employment of Gaussia luciferase for in
vivo imaging is well established (see, e.g., Santos E B et al.
Sensitive in vivo imaging of T cells using a membrane-bound Gaussia
princeps luciferase. Nat Med. 2009 March; 15(3):338-44. Epub 2009
Feb. 15; or Inoue Y et al. Gaussia luciferase for bioluminescence
tumor monitoring in comparison with firefly luciferase. Mol
Imaging. 2011 Oct. 1; 10(5):377-85. doi: 10.2310/7290.2010.00057.
Epub 2011 Apr. 26; see also below for additional details).
[0413] Moreover, the fragments F1 and F2 (i.e. the V.sub.L and
V.sub.H fragments of anti CD3 Fv in the above-described exemplary
embodiment) can be replaced by V.sub.L and V.sub.H fragments of an
antibody that is specific for a therapeutic or diagnostic compound
(i.e. in this case the functional domain F is capable of directly
binding to the therapeutic or diagnostic compound). Here, the same
therapeutic and diagnostic compounds as described above in the
context of the "pretargeting" approach may be considered.
[0414] Furthermore, the fragments F1 and F2 (i.e. the V.sub.L and
V.sub.H fragments of anti CD3 Fv in the above-described exemplary
embodiment) can be replaced by fragments of a fluorescent or
bioluminescent compound that are biologically inactive on their
own, but regain their function (i.e. their ability to mediate
fluorescence or bioluminescence) upon association of the two
fragments and functional complementation, thus allowing for
specific identification of cells that carry both the antigens A1
and A2.
[0415] A number of fluorescent molecules that may be used in this
context are well known and characterized in the art including, but
are not limited to, GFP (green fluorescent protein), GFP
derivatives (like YFP (yellow fluorescent protein) and CFP (cyan
fluorescent protein), Venus (Nagai T et al., A variant of yellow
fluorescent protein with fast and efficient maturation for
cell-biological applications. Nat Biotechnol. 2002 January;
20(1):87-90), or Cerulean (Enhanced CFP with S72A, Y145A and H148D
substitutions)). For these molecules, split fragments are described
that self-assemble in the situation of close proximity in a process
called bimolecular fluorescence complementation (BiFC).
[0416] For example, GFP, CFP, Venus, Venus with a M153T
substitution, or Cerulean may be split after amino acid 155 (i.e.,
for example, fragment F1 may comprise amino acids 1-155 of GFP,
while fragment F2 may comprise amino acids 156-245 of GFP, or vice
versa). Alternatively, YFP or Venus may be split after amino acid
173. Further details on split GFP and split GFP variants can be
found in Kerppola T K., Visualization of molecular interactions
using bimolecular fluorescence complementation analysis:
characteristics of protein fragment complementation. Chem Soc Rev.
2009; 38:2876-86.
[0417] An example for a molecule that mediates bioluminescence and
that can be used in this context is split luciferase. Particularly
suited is the luciferase of Gaussia princeps, which requires no
cofactors to be active and catalyzes the oxidation of the substrate
coelenterate luciferin (coelenterazine) in a reaction that emits
blue light, or derivatives of Gaussia luciferase (Remy I and
Michnick S, A highly sensitive protein-protein interaction assay
based on Gaussia luciferase. Nature Methods--3, 977-979 (2006)).
For example, fragment F1 may comprise a fragment from the
N-terminus of Gaussia luciferase to Gly-93, while fragment F2 may
comprise a fragment from Glu-94 to the C-terminus of Gaussia
luciferase, or vice versa (see Remy I and Michnick S, Nature
Methods, 2006 for details). Application of the Gaussia split
luciferase system in vivo has been established (Luker et al., In
vivo imaging of ligand receptor binding with Gaussia luciferase
complementation. Nature Medicine 2011, doi:10.1038/nm.2590),
allowing for straightforward adaptation to the purposes of the
present invention by a skilled person.
[0418] Intravital imaging of tumour lesions is of eminent
importance in cases, where cancer cells infiltrate tissues and the
complete elimination of all transformed cells is prerequisite for
cure. A surgeon searching for disseminated cancer cells in the
operation site may use split GFP or split GFP derivatives fused to
the targeting moieties and a laser assisted Multispectral
fluorescence camera system for detection of cells aberrantly
expressing an addressed antigen profile, similar to the
intraoperative use of fluorescence or bioluminescence that is
already exploited in some clinical settings (van Dam G M et al.,
Intraoperative tumor-specific fluorescence imaging in ovarian
cancer by folate receptor-.alpha. targeting: first in-human
results. Nat Med. 2011 Sep. 18; 17(10):1315-9; Luker et al., In
vivo imaging of ligand receptor binding with Gaussia luciferase
complementation. Nature Medicine 2011, doi:10.1038/nm.2590).
[0419] For detection of complemented split luciferase, the
application of a substrate for luciferase, which can be luciferin
or coelenterazine, is mandatory. Coelenterazine is preferred
because coelenterazine emits light independent of ATP and is well
established for in vivo imaging and in vivo applications. A surgeon
will be able to visualize cancer cells after having tagged the
tumor with polypeptide P1 and P2 and injected a non-toxic amount of
coelenterazine intravenously.
[0420] In another exemplary embodiment, the inventive principle is
applied in the context of a patient who suffers from a
haematopoietic tumour and who received a transplantation of healthy
haematopoietic cells from another person (the donor). Here, the set
of polypeptides according to the invention can be used for the
specific elimination (or detection) of remaining malignant
haematopoietic cells of the recipient after transplantation of
healthy haematopoietic cells from the donor.
[0421] To destroy the malignant haematopoietic cells in a patient
suffering from a haematopoietic tumour, the patient may be
subjected to chemotherapy and/or radiation therapy. Subsequently,
the patient receives a transplantation of healthy haematopoietic
cells from a donor.
[0422] To minimize the risk of transplant rejection or graft versus
host disease, transplantation of tissue/cells (e.g. bone marrow)
from a donor who has the same set of MHC (major histocompatibility
complex) molecules is usually preferred. However, often no donor
with the same set of MHC molecules ("HLA-identical donor") can be
identified. Therefore, transplant grafts with one or two mismatches
in the set of MHC variants, unrelated cord blood with up to three
mismatches, or haploidentical transplantations are increasingly
employed. Accordingly, it is common that there is at least one
distinctive difference between the set of MHC molecules expressed
by the cells of the recipient and the cells of the donor.
[0423] In the transplantation according to this exemplary
embodiment of the invention, donor cells are used that are distinct
from the recipient cells with respect to at least one of their HLA
variants. This means that there is at least one "distinguishing
antigen" that is present at the cell surface of the recipient
cells, but not at the cell surface of the donor cells. For example,
the distinguishing antigen may be HLA-A2, if the patient (i.e. the
recipient) is HLA-A2 positive, while the donor is HLA-A2
negative.
[0424] Despite chemotherapy/radiation therapy, individual malignant
haematopoietic cells of the recipient may have escaped eradication.
Since the surviving malignant haematopoietic cells are recipient
cells, they carry the distinguishing antigen that differentiates
recipient cells from donor cells. At the same time, they are cells
of haematopoietic lineage origin and thus have markers of this cell
lineage, such as CD45, at their cell surface. Leukemic blasts and
other haematopoietic cells of the patient are the only cells that
simultaneously display the distinguishing antigen (here HLA-A2) and
markers of haematopoietic cell lineage (here CD45). The set of
polypeptides according to the invention exploits this fact to
specifically eliminate these cells.
[0425] To this end, the first targeting moiety T1 of the first
polypeptide P1 may be a scFv specific for the distinguishing
antigen which is present only on recipient cells (here HLA-A2). As
fragment F1 of the functional domain F, the variable region of the
light chain (V.sub.L) of a CD3.epsilon.-specific antibody may be
chosen. The second targeting moiety T2 of the second polypeptide P2
may be a single chain variable Fragment (scFv) specific for CD45.
As fragment F2 of the functional domain F, the variable region of
the heavy chain (V.sub.H) of said CDR3.epsilon.-specific antibody
may be chosen. (Naturally, it is equally possible to use the
variable region of the heavy chain (V.sub.H) of a
CDR3.epsilon.-specific antibody as fragment F1 and the variable
region of the light chain (V.sub.L) of said CD3.epsilon.-specific
antibody as fragment F2. As is evident for a person of skill in the
art, this is a general principle, and it is generally possible to
switch the fragments used for fragment F1 and fragment F2.) Neither
is V.sub.L of the CDR3.epsilon.-specific antibody capable of
engaging CD3.epsilon. in the absence of V.sub.H, nor is V.sub.H of
the CDR3.epsilon.-specific antibody capable of engaging
CD3.epsilon. in the absence of V.sub.L. Accordingly, neither P1 nor
P2 is by itself capable of binding to CD3.epsilon..
[0426] However, if both the distinguishing antigen (e.g. HLA-A2)
and the CD45 antigen are present on one single cell, binding to
their respective antigens brings the two polypeptides P1 and P2
into close proximity. As a consequence, the unpaired V.sub.H and
V.sub.L domains assemble, resulting in heterodimerization of the
polypeptides P1 and P2 and in the formation of a functional
variable antibody fragment Fv from the V.sub.H and V.sub.L domains
that is capable of binding to CD3.epsilon. (see FIG. 2).
[0427] As a result, T cells are recruited and activated through
CDR3.epsilon., and the cell carrying both HLA-A2 and CD45 at its
cell surface is specifically eliminated by a cytotoxic T cell
response.
[0428] A person of skill in the art understands that, within the
principle of the present invention, diverse variations to this
exemplary embodiment are possible.
[0429] For example, in polypeptide P2 the scFv fragment recognising
the haematopoietic cell lineage marker CD45 can be replaced by a
scFv fragment recognising a marker of a different cell lineage or
cell type, i.e. the targeting moiety T2 may be a domain that
specifically binds an antigen that is specific for a cell lineage
other than the haematopoietic cell lineage or for a certain cell
type (for a detailed list of various cell lineage markers and cell
type markers that may be used in this context see David J. Dabbs,
Diagnostic immunohistochemistry, Churchill Livingstone, 3rd edition
(2010); or F Lin and J Prichard, Handbook of Practical
Immunohistochemistry: Frequently Asked Questions, Springer, New
York, 1st edition (2011)). To adapt the set of polypeptides to an
alternative cell lineage marker/cell type marker, it is sufficient
to replace the targeting moiety T2 of polypeptide P2 with a
targeting moiety that has binding specificity for the desired
alternative cell lineage marker/cell type marker.
[0430] For example, in the situation of metastatic renal cell
carcinoma (RCC), a person skilled in the art might consult the
above-cited databases for information on cell surface proteins with
restricted expression to kidney cells. Among many other molecules,
he will learn that expression of certain members of the aquaporin
family is confined to kidney cells and erythrocytes. Having
obtained this information, a person skilled in the art will
construct a polypeptide P2 recognising an aquaporin family member
that is confined to kidney cells and erythrocytes fused to the
variable region of the heavy chain (V.sub.H) of a
CD3.epsilon.-specific antibody. In case that the patient suffering
renal cell carcinoma is HLA A2 positive and a kidney transplant
from a healthy donor is HLA A2 negative, the clinician treating the
patient may utilise the two constructs (anti-aquaporin fused to
anti-CD3(V.sub.H) and anti-HLA A2 fused to the light chain
(V.sub.L) of said CDR3.epsilon.-specific antibody). In this case,
all cells simultaneously expressing said aquaporin and HLA A2 will
be tagged for lysis by T cells which are renal cell carcinoma cells
and metastatic tissues. Kidney cells donated by the healthy donor
are HLA A2 negative and will not be attacked. Since erythrocytes
loose HLA expression along the process of ontogeny and thus do not
carry HLA molecules on their surfaces, they will be spared despite
expressing large amounts of aquoporins. Again, a conventional,
non-complementing bispecific antibody addressing aquaporin would
mediate killing of all kidney cells from donor and recipient as
well as erythrocytes. A bispecific antibody addressing HLA A2 in a
HLA A2 positive patient most likely would be fatal, since every
recipient cell except erythrocytes express HLA A2 and can be
attacked by the retargeted T cells.
[0431] Another example is hepatocellular carcinoma (HCC).
Hepatocytes are largely involved in a number of metabolic processes
including the trafficking of lipoproteins. To this end, hepatocytes
express receptors for high density lipoproteins (HDL) on their
surfaces (scavenger receptor class B member 1, SCARB1). Treatment
of an HLA A2 positive patient suffering HCC which expresses SCARB1
on the surface of tumor cells and metastases can be accomplished by
a Polypeptide P2 construct comprising a scFv domain addressing
SCARB1 fused to the variable region of the heavy chain (V.sub.H) of
said CDR3.epsilon.-specific antibody and a Polypeptide P1 (anti-HLA
A2 scFv fused to the light chain (V.sub.L) of said
CD3.epsilon.-specific antibody) and transplantation of liver cells
from a healthy, HLA A2 negative donor. In this case, all
hepatocytes and hepatocyte-derived malignant cells expressing both,
SCARB1 and HLA A2 will be tagged for lysis by T lymphocytes.
Hepatocytes of the donor lacking HLA A2 will be spared as well as
normal SCARB1 negative donor cells expressing HLA A2. Since SCARB1
expression is also reported for cells participating in steroid
synthesis in the adrenal gland, these cells most likely will also
be destroyed by redirected T cells, resulting in Addison's
disease.
[0432] Various markers that are specific for certain cell types or
cell lineages or a few cell types/lineages are known (for a list of
examples, see above). More information on lineage markers,
differentiation antigens and tissue markers as well as their tissue
distribution are easily accessible from published sources (see,
e.g. David J. Dabbs, Diagnostic immunohistochemistry, Churchill
Livingstone, 3rd edition (2010); or F Lin and J Prichard, Handbook
of Practical Immunohistochemistry: Frequently Asked Questions,
Springer, New York, 1st edition (2011)) and public databases (such
as the Gene Expression Atlas of the European Bioinformatics
Institute (EBI), http://www.ebi.ac.uk/gxa/; or the Gene Expression
Omnibus (GEO) platform, see above). Moreover, such markers can be
identified and/or verified in a straightforward manner by a skilled
person using similar methods as described above for the
identification of tumour-specific combinations of antigens.
[0433] In certain preferred embodiments, an antigen with less than
perfect specificity for a certain cell type or cell lineage is used
(i.e. an antigen is used that is present on more than one, but
preferably only a few, cell types or cell lineages). In some
embodiments, an antigen is used that is expressed by said cell
type/cell lineage at a higher rate or at a higher proportion or
amount than by other cell types/cell lineages, in the sense that
there may be a small but detectable expression of said antigen also
in other cell types/cell lineages.
[0434] The concept can further be adapted to any other HLA
haplotype besides HLA-A2 used in the exemplary embodiment above, as
long as the recipient cells are positive for this HLA antigen and
the donor cells are negative for it. Possible HLA antigens include,
among others, HLA A1, HLA A2, HLA A3, HLA A25, HLA B7, HLA B8, HLA
B35, HLA B44 and HLA Cw3, HLA Cw4, HLA Cw6, HLA Cw7. To adapt the
set of polypeptides to an alternative HLA antigen, it is sufficient
to replace the targeting moiety T1 of polypeptide P1 with a
targeting moiety that has binding specificity for the desired
alternative HLA antigen. By an appropriate choice of the targeting
moiety T1, it is of course also possible to specifically eliminate
donor cells.
[0435] Moreover, instead of a V.sub.L domain and a V.sub.H domain
that upon assembly form a domain capable of binding to CD3.epsilon.
(i.e. fragment F1 and fragment F2 of polypeptides P1 and P2,
respectively), the V.sub.L domain and V.sub.H domain can be
replaced with domains/fragments that upon assembly confer a
different function to the resulting dimer. In this respect, all the
variations described above for the exemplary embodiment relating to
the elimination/detection of tumour cells identified by a specific
combination of two cell surface antigens are equally applicable.
For example, upon assembly the complemented functional domain may
mediate binding/activation of other effector cells than T cells,
may be adapted to a "pretargeting" approach, may bind a therapeutic
or diagnostic compound, or may form a fluorescent molecule/molecule
capable of mediating bioluminescence.
[0436] The diverse options for the choice of the fragments F1 and
F2 and for the choice of the targeting moieties T1 or T2 described
above in the exemplary embodiment relating to application of the
inventive principle for the specific elimination of tumour cells
may of course be considered, as well.
[0437] From the described exemplary embodiments and variations, it
will be clear to a person of skill in the art that the inventive
principle described above can not only be used for the highly
specific identification/elimination of tumour cells or of remaining
malignant recipient cells after a cell transplantation, but also
for the identification/elimination of any other type of cell
carrying a specific combination of two antigens that distinguishes
it from other types of cells.
[0438] In the following, reference is made to the figures:
[0439] FIG. 1A to FIG. 1D show the principle of the invention. FIG.
1A: Antigens and design of polypeptides P1 and P2. FIG. 1B: If a
cell expresses both antigens 1 and 2 at its cell surface,
simultaneous binding of polypeptide P1 and polypeptide P2 to the
surface of this cell brings P1 and P2 in close proximity, causes
association of fragments F1 and F2 and restoration of the
biological function of domain F by complementation. No restoration
of biological function occurs if only antigen A1 (FIG. 1C) or
antigen A2 (FIG. 1D) is present on the cell surface.
[0440] FIG. 2 shows an exemplary embodiment of the invention in an
allogeneic transplantation setting for haematopoietic neoplasias
with mismatched HLA antigens. In this situation, the dual
information of recipient HLA haplotype (HLA.sub.patient) and
haematopoietic lineage origin (CD45) is displayed exclusively on
leukemic blasts and other haematopoietic cells of the patient. The
first polypeptide P1 comprises a single-chain variable fragment
antibody construct directed against the HLA of the patient
(targeting moiety T1) fused to the V.sub.L fragment of anti CD3
(fragment F1). The second polypeptide P2 comprises a single-chain
variable fragment construct specific for the haematopoietic lineage
marker CD45 (targeting moiety T2), fused to the V.sub.H
split-fragment of anti CD3 Fv (fragment F2).
[0441] CD45: antigen specific for haematopoietic cells.
HLA.sub.patient: HLA-antigen specific for patient cells, i.e. an
allelic variant of the human MEW that is present on the surface of
patient cells (=cells of the recipient of cell transplantation),
but absent from the surface of donor cells. .alpha.CD45 scFv: scFv
with binding specificity for CD45. .alpha.HLA.sub.patient scFv:
scFV with binding specificity for HLA.sub.patient. CD3(V.sub.H):
variable region of an immunoglobulin heavy chain of an antibody
with binding specificity for CD3. CD3(V.sub.L): variable region of
an immunoglobulin light chain of an antibody with binding
specificity for CD3.
[0442] Upon binding of the two constructs through their .alpha.CD45
scFv and .alpha.HLA.sub.patient scFv, respectively, to a cell
carrying both the CD45 and the HLA.sub.patient antigen, assembly of
CD3(V.sub.H) with CD3(V.sub.L) leads to functional complementation
of the antibody with binding specificity for CD3, thus allowing for
specific recruitment and activation of T cells through the CD3
molecules at their cell surface.
[0443] FIG. 3A-FIG. 3B show the constructs used in the experiments
depicted in FIG. 4-FIG. 9. (Construct 85 differs from construct 71
by the fact that construct 85 has a Flag tag while construct 71 has
a myc tag. Construct 75 differs from construct 82 by the fact that
construct 75 has a Flag tag while construct 82 has a myc tag.)
V.sub.HCD3: variable region of the heavy chain of an anti-CD3
antibody; V.sub.LCD3: variable region of the light chain of an
anti-CD3 antibody; V.sub.HA2: variable region of the heavy chain of
an anti-HLA-A2 antibody; V.sub.LA2: variable region of the light
chain of an anti-HLA-A2 antibody; V.sub.L45: variable region of the
heavy chain of an anti-CD45 antibody; V.sub.H45: variable region of
the light chain of an anti-CD45 antibody; L18, L7, L15, L6, L19:
linker of 18, 7, 15, 6, 19 amino acids, respectively.
[0444] FIG. 4 shows conventional tandem bispecific single chain
scFv constructs used to control the assay system. Briefly,
bispecific antibody constructs with specificity for CD3 and HLA A2
were titrated as indicated to a co-culture of U266, a HLA A2
positive, CD45 positive myeloma cell line, and HLA A2 negative T
cells (monocyte depleted peripheral blood mononuclear cells), and
production of interleukin 2 by T cells was determined. Substantial
T cell stimulatory capacity was detected for the two FvCD3-HLA-A2
constructs 85 and 71, which differ by their respective Flag or
Myc-Tags (For domain structure of constructs see FIG. 3).
Bispecific tandem Fv constructs in HLA-A2-CD3 configuration were
less efficient and single chain constructs addressing either HLA-A2
or CD3 did not stimulate T cells at all. Positive control is
conducted using unspecific PHA-L (phytohemagglutinin)
stimulation.
[0445] FIG. 5 shows exquisite and highly specific T cell
stimulatory capacity if a pair of complementing constructs
according to the invention is used, but not if only one of the two
constructs of a pair is used individually. Briefly,
V.sub.LCD3-scFvHLA-A2 (construct 42),
V.sub.HCD3-scFvCD45(V.sub.L-V.sub.H) (construct 45) and
V.sub.HCD3-scFvCD45(V.sub.H-V.sub.L) (construct 55) were titrated
separately or in the combinations of constructs 42 and 45, or 42
and 55 to co-cultures of U266 and T cells as described. High T cell
stimulatory capacity was demonstrated for the combinations of 42/45
or 42/55 with minute activity, if only one of these constructs was
given separately. These results show that the V.sub.L and V.sub.H
domains of FvCD3 have to cooperate in order to reconstitute or
complement T cell engaging function. Importantly, the scFvCD45
targeting moiety could be switched from (V.sub.L-V.sub.H) to the
(V.sub.H-V.sub.L) configuration, clearly indicating that the
modular character of the constructs allows replacement of a
targeting moiety by another targeting moiety with desired
specificity. The assay system was controlled by the use of single
chain constructs CD45(V.sub.L-V.sub.H) and CD45(V.sub.H-V.sub.L)
which did not stimulate T cells to produce IL2.
[0446] FIG. 6 shows a first of three competitive blocking
experiments. The bispecific tandem construct FvCD3-HLA-A2
(construct 71) was given to co-cultures of U266 and T cells as
described and stimulatory function was determined through induced
IL2 production by T lymphocytes. The T cell stimulating function
was blocked by single chain constructs that occupy the targeted
epitope on the HLA A2 molecule (construct 4, concentration*100).
Intrinsic stimulation of T cells by the HLA A2 or CD3 specific
single chain constructs (construct 4 (concentration*100) or
construct 36 (concentration*9)) was ruled out. PHA-L was used as
positive control.
[0447] FIG. 7 shows that "tridomain constructs" (i.e. constructs
according to the invention) first have to bind on the surface of a
single cell to dimerize and complement T cell engaging functions
the competitive epitope blocking experiments. Briefly, constructs
42 and 45 were given to co-cultures of U266 cells and HLA-A2
negative T lymphocytes and stimulatory capacity was determined by
IL2 production of T cells. In experimental situations where the
epitopes on HLA A2 or CD45 molecules were competitively blocked by
constructs 4 or 46 (both concentrations*100), T cell stimulatory
function was abrogated. These results clearly indicate that the two
respective "tridomain constructs" have to bind simultaneously onto
the surface of a cell in order to restore or to complement T cell
engaging function. Intrinsic stimulatory activity of either
construct (42, 45, 4, 46 and 36) was ruled out using different
concentrations.
[0448] FIG. 8 shows the analogous experiment to FIG. 7 for the
combination of constructs 42 and 55. Again, T cell stimulatory
capacity of the combination of the two "tridomain constructs" was
abrogated by competitive blocking of antigenic epitopes on the HLA
A2 or the CD45 molecule. Importantly, these results again show that
the targeting module can be easily replaced by another module with
appropriate specificity. More importantly, the
V.sub.L-V.sub.H-V.sub.L configuration of construct 42 and the
V.sub.H-V.sub.H-V.sub.L configuration of construct 55 impede homo-
or hetero-dimerization or self-assembling of the constructs without
prior binding to a substrate expressing both, HLA A2 and CD45
antigens.
[0449] FIG. 9 shows lysis of U266 cells by HLA A2 negative T cells
in a sample comprising both V.sub.LCD3-scFvHLA-A2 and
V.sub.HCD3-scFvCD45(V.sub.H-V.sub.L) constructs ("both
constructs"). No significant lysis was observed in control samples
comprising only one of the two constructs.
[0450] FIG. 10 shows the On-target restoration of the polypeptides.
Binding of two separate polypeptides (P1 and P2) to their
respective antigens on a target cell, each consisting of a specific
single-chain variable antibody fragment (scFv, V.sub.H-V.sub.L)
fused to the variable light (V.sub.L) or variable heavy chain
domain (V.sub.H) of a CD3-specific antibody (Fragment F1 and F2),
enables V.sub.H/V.sub.L heterodimerization and the formation of a
functional CD3 binding site to engage T cells.
[0451] FIG. 11A-FIG. 11D show that CD3 V.sub.H/V.sub.L dimerization
engages T cells and is dual-antigen-restricted. U266 myeloma,
primary T cell pro-lymphocytic leukemia (T-PLL), and THP-1 acute
myeloid leukemia cells, all HLA-A2-positive and CD45-positive, were
probed with HLA-A2-negative donor peripheral blood mononuclear
cells (PBMC) and the polypeptides as indicated. T-cell engagement
was assessed by reactive interleukin-2 (IL-2) production (FIG. 11A)
and target cell lysis (FIG. 11B). The bispecific tandem scFv
(CD3(V.sub.H-V.sub.L)-HLA-A2(V.sub.H-V.sub.L) antibody was used as
a positive control. (FIG. 11C), Binding of the polypeptides on
THP-1 cells is competitively blocked by an excess of scFvCD45
(left) and scFvHLA-A2 (right) inhibitors (blocking the individual
antigen epitopes on the target cell), as indicated, and reactive
IL2 production by donor PBMCs was investigated. (FIG. 11D), The
single or double antigen negative cell lines RAJI and KMS-12-BM
were probed with the polypeptides. PHA-L was used as a nonspecific
stimulus control for PBMCs.
[0452] FIG. 12A-FIG. 12B show targeted therapy by conditional
CD3V.sub.H/V.sub.L complementation in vivo. (FIG. 12A), Survival of
mice (n=6 per group) after intraperitoneal injection of
5.times.10.sup.6 THP-1 acute leukemic cells together with
1.25.times.10.sup.5 CMV-specific, HLA-A2-negative donor T cells and
the polypeptides (0.5 .mu.g) as indicated (tumor cells: T-cell
ratio=40/1). (FIG. 12B), Caspase 3 activation was assessed in vitro
by flow cytometry in HLA-A2/CD45 double-positive THP-1 and
CD45-positive but HLA-A2-negative bystander cells after co-culture
with donor T cells and the polypeptides (3 nM) as indicated. The
bispecific tandem scFv
(CD3(V.sub.H-V.sub.L)-HLA-A2(V.sub.H-V.sub.L)) antibody was used as
a positive control.
[0453] FIG. 13A-FIG. 13B show that EGFR- and EpCAM-directed
polypeptides engage T cells for carcinoma cell destruction. EGFR
and EpCAM double-positive human colon cancer cell line COLO-206F
and melanoma cell line FM-55 (EGFR-positive but EpCAM-negative)
were probed with PBMCs in the presence of polypeptides specific for
EGFR (CD3(V.sub.H)-EGFR(V.sub.H-V.sub.L)) and EpCAM
(CD3(V.sub.L)-EpCAM(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive interferon-.gamma. (IFN.gamma.)
production (FIG. 13A) and activation of caspase 3 in target cells
(FIG. 13B).
[0454] FIG. 14 shows that HLA-A2 and CEA directed polypeptides
redirect T cells for tumor cell destruction. Human colon cancer
cell line COLO-206F, melanoma cell line FM-55 and ovarian cancer
cell line OVCAR were probed with PBMCs in the presence of
polypeptides specific for HLA-A2
(CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L)) and CEA
(CD3(V.sub.H)-CEA(V.sub.H-V.sub.L)) as indicated. T cell engagement
was assessed by reactive IFN.gamma. production. Samples were run
and analyzed as duplicates.
[0455] FIG. 15 shows that HLA-A2 and EGFR directed polypeptides
redirect T cells for tumor cell destruction. Human cell lines
COLO-206F, FM-55 and OVCAR were probed with PBMCs in the presence
of polypeptides specific for HLA-A2
(CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L)) and EGFR
(CD3(V.sub.H)-EGFR(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0456] FIG. 16 shows that HLA-A2 and Her2 directed polypeptides
redirect T cells for tumor cell destruction. Human cell lines
COLO-206F, FM-55 and OVCAR were probed with PBMCs in the presence
of polypeptides specific for HLA-A2
(CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L)) and Her2
(CD3(V.sub.H)-Her2(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0457] FIG. 17 shows that CD45 and HLA-A2 directed polypeptides
redirect T cells for tumor cell destruction. In this experiment the
split antiCD3 fragments (CD3(V.sub.H) and CD3(V.sub.L)) for the
anti-CD45 and anti-HLA-A2 targeting moieties were exchanged,
compared to the CD45 and HLA-A2 polypeptides used in FIG. 5,7-9,
11,12, 14-16. Human myeloma cell line U266 was probed with PBMCs in
the presence of polypeptides specific for CD45
(CD3(V.sub.L)-CD45(V.sub.H-V.sub.L)) and HLA-A2
(CD3(V.sub.H)-HLA-A2(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0458] FIG. 18 shows that EGFR and EpCAM directed polypeptides
redirect T cells for tumor cell destruction. Human colon cancer
cell lines COLO-206F and CX-1 and ovarian cancer cell line OVCAR
were probed with PBMCs in the presence of polypeptides specific for
EpCAM (CD3(V.sub.L)-EpCAM(V.sub.H-V.sub.L)) and EGFR
(CD3(V.sub.H)-EGFR(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0459] FIG. 19 shows that Her2 and EpCAM directed polypeptides
redirect T cells for tumor cell destruction. Human ovarian cancer
cell line OVCAR were probed with PBMCs in the presence of
polypeptides specific for EpCAM
(CD3(V.sub.L)-EpCAM(V.sub.H-V.sub.L)) and Her2
(CD3(V.sub.H)-Her2(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0460] FIG. 20 shows that CD45 and CD138 directed polypeptides
redirect T cells for tumor cell destruction. Human myeloma cell
line AMO-1 was probed with PBMCs in the presence of polypeptides
specific for CD45 (CD3(V.sub.L)-CD45(V.sub.H-V.sub.L) upper panel,
CD3(V.sub.H)-CD45(V.sub.H-V.sub.L) lower panel) and CD138
(CD3(V.sub.H)-CD138(V.sub.H-V.sub.L) upper panel,
CD3(V.sub.L)-CD138(V.sub.H-V.sub.L) lower panel) as indicated. T
cell engagement was assessed by reactive IFN.gamma. production.
Samples were run and analyzed as duplicates.
[0461] FIG. 21 shows that targeting a single antigen (CD138) with
CD138 directed polypeptides redirect T cells for tumor cell
destruction. Human myeloma cell line AMO-1 was probed with PBMCs in
the presence of polypeptides specific for CD138
(CD3(V.sub.L)-CD138(V.sub.H-V.sub.L) and
(CD3(V.sub.H)-CD138(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0462] FIG. 22 shows that targeting a single antigen (CD45) with
CD45 directed polypeptides redirect T cells for tumor cell
destruction. Human myeloma cell lines AMO-1 and U266 were probed
with PBMCs in the presence of polypeptides specific for CD45
(CD3(V.sub.L)-CD45(V.sub.H-V.sub.L) and
(CD3(V.sub.H)-CD45(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0463] FIG. 23 shows the On-target restoration of two polypeptides
directed against a single antigen on the cell surface, targeting
two different epitopes (upper part) or the same epitope (lower
part) on the antigen. Binding of two separate polypeptides (P1 and
P2) to their respective epitope, on the same antigen, on a target
cell. For targeting two different epitopes, the targeting moiety of
each polypeptide consists of a specific single-chain variable
antibody fragment (scFv). For targeting the same epitope, the
targeting moiety of each polypeptide consists of the same
single-chain variable antibody fragment (scFv). The targeting
moieties are fused via peptide linkers to the variable light
(V.sub.L) or variable heavy chain domain (V.sub.H) of a
CD3-specific antibody (Fragment F1 and F2), enables V.sub.H/V.sub.L
heterodimerization and the formation of a functional CD3 binding
site (functional domain) to engage T cells.
[0464] FIG. 24 shows the possibility to use different effector ways
to kill a target cell with a kit of polypeptide parts. To this end,
the anti-CD3 module (F1 and F2) is replaced by an anti-HIS
(hexa-histidine) module which, after simultaneous binding of
polypeptide 1 and 2, complements a hexa-histidine binding site and
thus binds histidine labeled payloads (eg. a HIS-tagged toxin). The
targeting moiety T1 (V.sub.H-V.sub.L) of polypeptide P1
specifically binds to HLA-A2, the targeting moiety T2
(V.sub.H-V.sub.L) of polypeptide P2 specifically binds to CD45. The
fragment F1 of polypeptide P1 comprises of a V.sub.H domain of an
antibody against a hexahistidine-tag and fragment F2 of polypeptide
P2 comprises a V.sub.L domain of the same antibody. Human myeloid
leukemia cell line THP-1 was probed with a histidine (His) tagged
Clostridium perfringens Iota toxin component Ia at 0.01 .mu.g/ml in
combination with indicated polypeptides. After 48 hours in culture
the cell viability was measured using the ALAMARBLUE.RTM. assay.
The results show a reduction of viability against the background of
the assay for cells probed with the combination, but not with
individual polypeptides. Control THP-1 cells were grown
simultaneously in culture without toxin. Samples were run and
analyzed as duplicates.
[0465] FIG. 25 shows that HLA-A2 and CD45 directed polypeptides,
comprising of a split antibody against a His-tag, kill tumor cells
using a histidine (His) tagged Shiga toxin subunit A at a
concentration of 0.01 .mu.g/ml. The same experimental setup was
used as in FIG. 24.
[0466] FIG. 26 shows that HLA-A2 and CD45 directed polypeptides,
comprising of a split antibody against a His-tag, kill tumor cells
using a histidine (His) tagged Shiga toxin subunit A at a
concentration of 0.1 .mu.g/ml. The same experimental setup was used
as in FIG. 24 and FIG. 25.
[0467] FIG. 27 shows that EGFR and EpCAM directed polypeptides,
comprising of a functional domain F with F1 and F2 are V.sub.H and
H.sub.L of a antibody specific for digoxigenin (aDig), mark tumor
cells using a digoxigenin labeled horse radish peroxidase (HRP)
molecule. The targeting moiety T1 (V.sub.H-V.sub.L) of polypeptide
P1 specifically binds to EGFR, the targeting moiety T2
(V.sub.H-V.sub.L) of polypeptide P2 specifically binds to EpCAM.
The fragment F1 of polypeptide P1 comprises of a V.sub.H domain of
an antibody against digoxigenin and fragment F2 of polypeptide P2
comprises a V.sub.L domain of the same antibody. Human colon cancer
cell line Colo-206F was first probed with indicated polypeptides
followed by probing with digoxigenin labeled HRP. The samples were
analyzed using the (Invitrogen.TM., ELISA Kit) and the absorbance
was read with a BioRAD-micro plate reader. For analysis the
chromogen blank sample (no Digoxigenin-HRP) was set to 0. Samples
were run and analyzed as duplicates.
[0468] FIG. 28 shows that CD45 and HLA-CW6 directed polypeptides
redirect T cells for patient cell destruction. Primary patient
cells with known HLA-haplotypes were used. A51=cells of a patient
with MDS (myelodysplastic syndrom), homozygous for the HLA-Cw6
haplotype. A49=cells of a patient after allogeneic bone marrow
transplantation, heterozygous for the HLA-Cw6 haplotype. Patient
cells were incubated with healthy PBMCs for 30 hours, in the
presence of polypeptides specific for CD45
(CD3(V.sub.L)-CD45(V.sub.H-V.sub.L) and HLA-Cw6
(CD3(V.sub.H)-HLA-CW6(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0469] FIG. 29 shows that EGFR and EpCAM directed polypeptides
redirect T cells for primary cancer patient cell destruction. A44
tumor cells were collected from the malignant ascites of a 48 years
old male patient with metastatic pancreatic cancer. Patient tumor
cells were incubated with patients own PBMCs (collected by
phlebotomy) for 30 hours, in the presence of polypeptides specific
for EpCAM (CD3(V.sub.L)-EpCAM(V.sub.H-V.sub.L) and EGFR
(CD3(V.sub.H)-EGFR(V.sub.H-V.sub.L)) as indicated. T cell
engagement was assessed by reactive IFN.gamma. production. Samples
were run and analyzed as duplicates.
[0470] FIG. 30 shows that CD45 and HLA-A2 directed polypeptides
redirect CMV restricted CD8+ T cells for tumor cell destruction.
Human tumor cells THP-1 and U266 were incubated with CMV restricted
T-cells from a HLA-A2 negative healthy donor for 30 hours, in the
presence of polypeptides specific for HLA-A2
(CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L) and CD45
(CD3(V.sub.H)-CD45(V.sub.H-V.sub.L)) as indicated. The bispecific
tandem scFv
(CD3(V.sub.H-V.sub.L).times.HLA-A2(V.sub.H-V.sub.L)-antibody was
used as a positive control. T cell engagement was assessed by
reactive IFN.gamma. production. Samples were run and analyzed as
duplicates.
[0471] FIG. 31 shows the principle idea to eliminate autoimmune or
hypersensitivity disorder causing B-cell clones with a kit of
polypeptide parts, consisting of an allergen specific polypeptide
and a cell type specific polypeptide. The first polypeptide P1 has
at its targeting moiety an allergen (eg. Betv-1A, Der-f2,
Conglutin-7, Can-f1, Feld-d1). The second polypeptide P2 has at its
targeting moiety a specific single-chain variable antibody fragment
(scFv, V.sub.H-V.sub.L) targeting a cell surface protein (eg. CD19,
CD138, CD38). Both targeting moieties are fused to either the
variable light (V.sub.L) or variable heavy chain domain (V.sub.H)
of a CD3-specific antibody (Fragment F1 and F2).
[0472] In the following, reference is made to certain (human) genes
or proteins also referred to in the specification, the appended
examples and figures as well as (partially) in the claims. Herein
below, corresponding (exemplary) gene accession numbers are
provided. Further accession numbers are also provided in the
specification elsewhere herein as well as the appended examples.
[0473] CD45: Gene ID: 5788, updated on 13 Jan. 2013, 3.
Protein=P08575-1=Isoform 1, Last modified Jul. 19, 2003. Version 2
[0474] CD34: Protein: P28906-1/2 Last modified Jul. 15, 1998.
Version 2. [0475] CD33: Gene ID: 945, updated on 30 Dec. 2012:
Protein: P20138 [UniParc]. Last modified Oct. 17, 2006. Version 2.
Checksum: 1C73E588240FBAD8 [0476] CD138: Gene ID: 6382, updated on
6 Jan. 2013, 4. Protein=P18827 [UniParc]. Last modified May 5,
2009. Version 3. [0477] CD15: Gene ID: 2526, updated on 5 Jan. 2013
[0478] CD1a: Gene ID: 909, updated on 30 Dec. 2012, P06126
[UniParc]. Last modified Feb. 9, 2010. Version 4. Checksum:
C575C3C538F0AA29 [0479] CD2: Gene ID: 914, updated on 5 Jan. 2013;
P06729 [UniParc]. Last modified Oct. 23, 2007. Version 2. Checksum:
A03D853C3B618917 [0480] CD3e: Gene ID: 916, updated on 5 Jan. 2013,
P07766 [UniParc]. Last modified Feb. 1, 1996. Version 2. Checksum:
A1603D010E9957D7 [0481] CD4: Gene ID: 920, updated on 13 Jan. 2013;
P01730 [UniParc]. Last modified Nov. 1, 1988. Version 1. Checksum:
20ED893F9E56D236 [0482] CD5: Gene ID: 921, updated on 30 Dec. 2012;
P06127 [UniParc]. Last modified Nov. 30, 2010. Version 2. Checksum:
9131AEC9683EE1D3 [0483] CD8a: Gene ID: 925, updated on 30 Dec.
2012; Isoform 1/2 (membrane) P01732-1/2 (mCD8alpha) [UniParc]. Last
modified Jul. 21, 1986. Version 1. Checksum: FCCA29BAA73726BB
[0484] CD20: Gene ID: 931, updated on 6 Jan. 2013; P11836
[UniParc]. Last modified Oct. 1, 1989. Version 1. Checksum:
AC5420F8B626BDD1 [0485] CD23: Gene ID: 2208, updated on 4 Jan.
2013; P06734 [UniParc]. Last modified Jan. 1, 1988. Version 1.
Checksum: F86708C0E6515B87 [0486] CD31: Gene ID: 5175, updated on
13 Jan. 2013; Isoform Long [UniParc]. Last modified Apr. 1, 1990.
Version 1. Checksum: C57BBFA200A407A6, P16284-1/2/3/4/5/6=Isoforms
1-6 [0487] CD43: Gene ID: 6693, updated on 30 Dec. 2012; P16150
[UniParc]. Last modified Apr. 1, 1990. Version 1. Checksum:
C9C9AB8435D5E1FE [0488] CD56: Gene ID: 4684, updated on 30 Dec.
2012; Isoform 1 [UniParc]. Last modified Jul. 22, 2008. Version 3.
Checksum: FD3B9DE80D802554, P13591-2/1/3/4/4/6, Isoforms 1-6 [0489]
CD57: Gene ID: 27087, updated on 5 Jan. 2013 [0490] CD68: Gene ID:
968, updated on 6 Jan. 2013; Isoform Long (CD68.1) [UniParc]. Last
modified May 15, 2007. Version 2. Checksum: 69E68D69EDE8EFBO,
P34810-1/2, Isoform 1/2 [0491] CD79a: Gene ID: 973, updated on 5
Jan. 2013; Isoform 1 (Long) [UniParc]. Last modified Jun. 1, 1994.
Version 2., Checksum: 6E5B837409969292, P11912-1/2, Isoform 1/2
[0492] CD146: Gene ID: 4162, updated on 30 Dec. 2012; Isoform 1
[UniParc]. Last modified Jan. 10, 2006. Version 2. Checksum:
E46CB8AC7BA0738E, P43121-1/2, Isoform 1/2. [0493] surfactant
proteins (A and B): Gene ID: 6440, updated on 30 Dec. 2012 and Gene
ID: 6439, updated on 30 Dec. 2012, P07988 [UniParc]. Last modified
May 1, 1992. Version 3. Checksum: 9FD7F66678A35153, and Isoform 1
[UniParc]. Last modified Apr. 1, 1990. Version 2. Checksum:
C26A21E33C60AA78, P11686-1/2, Isoform 1/2 [0494] synaptophysin:
Gene ID: 6855, updated on 30 Dec. 2012, P08247 [UniParc]. Last
modified Aug. 1, 1991. Version 3. Checksum: 592289C43B12EFA7 [0495]
nicotinic acetylcholine receptors: Gene ID: 1138, updated on 30
Dec. 2012, Gene ID: 1136, updated on 6 Jan. 2013, Gene ID: 1139,
updated on 13 Jan. 2013, Gene ID: 1137, updated on 30 Dec. 2012,
Gene ID: 1141, updated on 5 Jan. 2013 [0496] muscle-specific kinase
MUSK: Gene ID: 4593, updated on 8 Jan. 2013, Isoform 1 [UniParc].
Last modified Jan. 1, 1998. Version 1. Checksum: 3DDC20E179FA010C,
O15146-1/2, Isoform 1/2 [0497] voltage-gated calcium channel
(P/Q-type): Gene ID: 773, updated on 5 Jan. 2013; Isoform 1 (1A-1)
(BI-1-GGCAG) [UniParc]. Last modified Jul. 15, 1999. Version 2.
Checksum: 2F2F378ACE02FD56, O00555-1/2/3/4/5/6/7, Isoforms 1-7,
Gene ID: 25398, updated on 11 Jan. 2013, J3KP41 [UniParc]. Last
modified Oct. 3, 2012. Version 1. Checksum: AEDF4D2A5E49263F [0498]
voltage-gated potassium channel (VGKC): Gene ID: 3737, updated on
30 Dec. 2012, Gene ID: 3736, updated on 8 Jan. 2013, Gene ID: 3742,
updated on 8 Jan. 2013 [0499] N-methyl-D-aspartate receptor (NMDA):
Gene ID: 2904, updated on 5 Jan. 2013, Q13224 [UniParc]. Last
modified Jun. 20, 2001. Version 3. Checksum: 40AEB12BE6E50CEF; Gene
ID: 2902, updated on 30 Dec. 2012, Isoform 3 (Long) (NR1-3)
[UniParc]. Last modified Jun. 1, 1994. Version 1. Checksum:
CDF5402769E530AB, Q05586-1/2/3/4/5, Isoforms 1-5 [0500] TSHR: Gene
ID: 7253, updated on 4 Jan. 2013, Isoform Long [UniParc]. Last
modified Mar. 29, 2005. Version 2. Checksum: D2EE9CEBFD64A65F,
P16473-1/2/3, Isoforms 1-3 [0501] Amphiphysin: Gene ID: 273,
updated on 8 Jan. 2013, Isoform 1 (128 kDa) [UniParc]. Last
modified Feb. 1, 1996. Version 1, Checksum: 78B4F75AB75BA357,
P49418-1/2, Isoform 1-2 [0502] ganglioside GQ1B: Gene ID: 29906,
updated on 30 Dec. 2012 [0503] GD3: Gene ID: 117189, updated on 22
Jun. 2012 [0504] Ca-125: Gene ID: 94025, updated on 30 Dec. 2012,
Q8WXI7 [UniParc]. Last modified Mar. 1, 2003. Version 2. Checksum:
B3E7BDF19997A440 [0505] Her-2/neu: Gene ID: 2064, updated on 13
Jan. 2013, 4. Protein=P04626-1/2/3/4=Isoform 1-4, Last modified
Aug. 13, 1987. Version 1. gross cystic disease fluid protein 15;
Gene ID: 5304, updated on 30 Dec. 2012 [0506] CD117: Gene ID: 3815,
updated on 6 Jan. 2013 [0507] CD30: Gene ID: 943, updated on 6 Jan.
2013; Isoform Long [UniParc]. Last modified Dec. 1, 1992. Version
1. Checksum: 7A407CC78A6E0BC8, P28908-1/2, Isoform 1/2 [0508]
Platelet derived growth factor receptor PDGFR alpha: Gene ID: 5159,
updated on 13 Jan. 2013, Gene ID: 5156, updated on 13 Jan. 2013,
Isoform 1 [UniParc]. Last modified Apr. 1, 1990. Version 1.
Checksum: 5E3FB9940ACD1BE8, P16234-1/2/3, Isoforms 1-3; P09619
[UniParc]. Last modified Jul. 1, 1989. Version 1. Checksum:
038C15E531D6E89D [0509] Melanoma associated marker/Mart 1: Gene ID:
2315, updated on 30 Dec. 2012; Q16655 [UniParc]. Last modified Nov.
1, 1996. Version 1. Checksum: B755BFF39CFCB16E [0510] CD133: Gene
ID: 8842, updated on 13 Jan. 2013; Isoform 1 (AC133-1) (S2)
[UniParc]. Last modified Jun. 1, 1998. Version 1. Checksum:
D21CBC05ADB2DEDF, O43490-1/2/3/4/5/6/7, Isoforms 1-7
[0511] In the following, reference is made to the examples which
are given to illustrate, not to limit the present invention.
EXAMPLES
Example 1
Cloning of Recombinant Antibody Constructs
[0512] DNA sequences derived from hybridoma cells and coding for
the variable domains of anti-CD3, anti-CD45 and anti-HLA A2
antibodies, respectively, were used to generate the antibody
constructs depicted in FIG. 3 by standard methods of molecular
biology (see, e.g. Sambrook et al., Molecular Cloning: A Laboratory
Manual, Cold Spring Harbor Laboratory Press, New York (2001)). The
constructs were designed to carry different affinity tags to
facilitate identification and purification upon expression of
recombinant proteins (Myc-, Flag, His-Tag). For details on domain
arrangement, affinity tags and linkers of the constructs, see FIG.
3.
[0513] pelB Leader codes for an amino acid sequence that directs a
protein expressed in bacteria to the bacterial periplasm. The
leader sequence is cleaved by bacterial enzymes and the protein can
be isolated.
Example 2
Expression and Purification of Recombinant Antibodies
[0514] Periplasmic Protein Expression:
[0515] Recombinant antibody constructs were expressed in the
periplasm of E. coli strain TG1 using an appropriate prokaryotic
expression vector. Two litres of 2.times.TY medium including 0.1%
glucose and 100 .mu.g/ml ampicillin were inoculated with 20 ml of
an overnight culture of transformed TG1 and grown to exponential
phase (OD600 0.8-0.9) at 37.degree. C. Since the antibody fragments
are under control of the lactose promotor, protein expression was
induced by addition of 1 mM IPTG followed by incubation at RT (room
temperature) with shaking for additional 3 h. Cells were harvested
by centrifugation for 10 min at 2,750.times.g and 4.degree. C. and
were resuspended in 100 ml or an appropriate buffer. Cell lysis was
performed by adding 50 .mu.g/ml freshly dissolved lysozyme [Roche
Diagnostics] and incubating for 25 min on ice. Following, 10 mM
MgSO.sub.4 were added to stabilise spheroblasts, and cells were
centrifuged for 10 min at 6,200.times.g and 4.degree. C. Finally,
the supernatant obtained, containing the periplasmic protein, was
dialysed against PBS overnight at 4.degree. C. and was centrifuged
again for 15 min as stated above. Afterwards, recombinant proteins
were purified by Ni-NTA-IMAC (Nickel Nitrilo-triacetic acid
Immobilised Metal Affinity Chromatography).
[0516] Immobilised-Metal Affinity Chromatography (IMAC):
[0517] For purification of recombinant proteins with a His.sub.6
tag, an IMAC was performed by means of immobilised
nickel-nitrilotriacetic acid (NTA) agarose beads [Qiagen]. First, a
column of 1 ml Ni-NTA agarose needed to be equilibrated with
approximately 10 ml of sterile PBS or a sodium phosphate buffered
solution with 20 mM imidazole. Then, crude protein, either
precipitated from cytoplasmic expression or dialysed from
periplasmic expression, was gradually applied to the column. After
washing with about 20 ml of an appropriate IMAC wash buffer (sodium
phosphate buffered solution containing 20-35 mM imidazole) until no
more protein was detectable in the flow, bound protein was eluted
from the column in 500 .mu.l fractions with a sodium
phosphate-buffered solution including 250 mM imidazole.
[0518] All collected wash and elution fractions were tested for
presence of protein by a qualitative Bradford assay by adding 10
.mu.l of each sample to 90 .mu.l of 1.times. Bradford solution.
Verification of the purification process was performed by an
SDS-PAGE analysis. For this purpose, eluted fractions were run in
parallel with crude protein, flow, and wash fraction under reducing
conditions. Finally, positive fractions determined by the
colorimetric reaction were pooled into peak and minor fractions and
dialysed against PBS overnight at 4.degree. C. For usage in
stimulation assays, purified proteins needed to be sterile
filtrated, and their concentration has been determined. In
addition, after protein quantification, 2 .mu.g of further used
fractions were also analysed by SDS-PAGE and Western blotting under
reducing and non-reducing conditions.
[0519] In an alternative of Example 2, DNA coding for
(V.sub.H)CD3-EGFR(V.sub.H-V.sub.L),
(V.sub.H)CD3-CEA(V.sub.H-V.sub.L),
(V.sub.H)CD3-Her2(V.sub.H-V.sub.L),
(V.sub.H)CD3-HLA-A2(V.sub.H-V.sub.L),
(V.sub.H)CD3-HLA-CW6(V.sub.H-V.sub.L)
(V.sub.H)CD3-CD138(V.sub.H-V.sub.L),
(V.sub.H)antiDig-EGFR(V.sub.H-V.sub.L),
(V.sub.H)antiHis-HLA-A2(V.sub.H-V.sub.L),
(V.sub.L)CD3-CEA(V.sub.H-V.sub.L),
(V.sub.L)CD3-EpCAM(V.sub.H-V.sub.L),
(V.sub.L)antiDig-EpCAM(V.sub.H-V.sub.L),
(V.sub.L)CD3-CD45(V.sub.H-V.sub.L) were synthesised and proteins
were produced and isolated by GenScript (Piscataway, N.J., USA).
The DNA was codon optimized for E. coli expression (vector E3),
expression optimized, grown in 2 litres standard LB-medium, protein
was obtained from inclusion bodies or periplasm (pelB leader) in
one step by Ni-HiTrap column. Bacterial endotoxins were removed by
dialysis against 5 litres 1.times. phosphate buffered saline (PBS).
The concentration was measured by Bradford protein assay with
bovine serum albumin (BSA) as standard. The purity was estimated by
densitometric analysis of a Coomassie Blue-stained SDS-PAGE gel.
Aliquots were stored at -80.degree. C. or +4.degree. C. Storage
buffer was used 1.times.PBS, 5% Glycerol, 0.5% sodium lauroyl
sarcosine, pH 7.4.
Example 3
Cell Culture Techniques
[0520] Cell Cultivation:
[0521] Mammalian cells were cultivated in T75 tissue culture flasks
in 20 ml of the appropriate culture medium at 37.degree. C. with 5%
CO.sub.2. Cells were split every 2-3 days. Adherent cells first
needed to be detached with 1.times. trypsin-EDTA. Cells were
counted using a vital stain, eosin or trypan blue. For storage,
cells of 60-80% confluence were harvested by centrifugation for 5
min at 450.times.g, resuspended in FCS with 10% DMSO, aliquoted in
cryovials, and gradually frozen to a temperature of -80.degree. C.
Cells were thawed quickly at 37.degree. C. in a water bath and
cautiously added to 5 ml medium. In order to remove DMSO, cells
were centrifuged again, resuspended in fresh medium and transferred
into a tissue culture flask.
[0522] Preparation of Peripheral Blood Mononuclear Cells
(PBMC):
[0523] PBMC, comprising lymphocytes and monocytes, were previously
isolated from the buffy coat of a healthy human donor by density
centrifugation using the Ficoll based lymphocyte separation
solution LSM 1077 (PAA Laboratories, Pasching, Austria). Since,
during usage, these PBMC nevertheless appeared as an inhomogeneous
cell population, the separation from remaining erythrocytes,
granulocytes, and thrombocytes was repeated as follows. Thawed
PBMC, resuspended in 30 ml RPMI 1640 medium containing 10% FCS and
Pen-Strep, were cautiously layered onto 10 ml of LSM 1077 and
centrifuged for 5 min at 800.times.g without braking. After
discarding the upper phase, PBMC concentrated in the interphase
were transferred into a fresh tube, resuspended in 30 ml of medium,
and centrifuged for 5 min at 450.times.g. Monocytes were removed by
cultivating PBMC in a O10 cm tissue culture plate overnight,
allowing adherence of monocytes to the plate. Finally, PBMC,
remaining in solution, were harvested.
[0524] In an alternative of Example 3, Primary human cancer cells
from a patient with metastatic pancreatic cancer were extracted
from the ascites bags of the patient (FIG. 29). 4 litres with fresh
collected malignant ascites were stored in 2 litres glass bottles
at 4.degree. C. over night. The next day the cell pellet from the
glass bottom was washed in 1.times.PBS and resuspended in culture
medium (DMED supplemented with 200 .mu.M l-glutamine, 10% heat
inactivated FBS, penicillin (200 U/mL), streptomycin (200 .mu.g/mL)
and sodium pyruvate (1 mM) (GIBCO.RTM.)). Adherend cells were
cultured in incubator 36.degree. C., 5% CO.sub.2, 90% humidity. The
same day the ascites was collected from the patient, 20 ml
peripheral blood for PBMC extraction was collected. Primary
leukemic cells were obtained from a 71 year old male patient with
T-cell-prolymphocytic leukemia (T-PLL) (FIG. 11A) relapsing 32 days
after matched allogeneic stem cell transplantation. The leukemic
T-PLL cells were extracted as PBMCs from the peripheral blood of
the patients. At the time the sample was drawn the patient had
>90% leukemic blast in his blood count in routine clinic
diagnostic. From all patients an informed consent, approved by the
University hospital of Wurzburg ethical committee, was signed.
[0525] In an alternative of Example 3, generation of
cytomegalievirus (CMV)-specific human T-cells: Briefly, dendritic
cells (DC) were generated from plastic adherent monocytes from PBMC
of HLA-A0201 negative, B0702+ donor. After 72 h of culture in
GM-CSF/IL4-containing DC medium (Cellgenix), DC were matured in
medium containing IL4 (100 ng/ml), GM-CSF (800 IU/ml), LPS (10
ng/ml) and IFN.gamma. (100 U/ml) plus 2.5 ug/ml CMV pp65 derived
peptide TPRVTGGG (SEQ ID NO:201). After 16 h, DC were irradiated
(30Gy) and co-incubated with CD45RO.sup.-, CD57.sup.- naive
CD8.sup.+ T-cells at a 1:4 ratio in medium containing 5% AB serum
and IL21 (long/ml). Fresh medium, IL7 and IL15 was added on days 3,
5 and 7 of culture, before evaluation on day 10-12. Cells were
cultured in Cellgenix DC medium. Human AB serum was used from PAA.
One single batch was used throughout all experiments. IL4, IL7,
IL15, IL21 were either purchased from Peprotech or Cellgenix (with
identical results). GM-CSF was purchased from Gentaur. LPS (E. coli
O:15) was purchased from Sigma. The HLA-B0702-restricted
CMV-specific peptide TPRVTGGG (SEQ ID NO:201) was purchased from
jpt. For in vivo experiments, CMV-specific T-cells were further
purified using APC-labelled MHC-multimers (Immudex). MHC multimer
staining was performed at room temperature, followed by isolation
of MHC-multimer+ T-cells with anti-APC-beads (Miltenyi).
Example 4
Functional Assays
[0526] Flow Cytometry:
[0527] Binding of antibody fusion proteins to antigen-presenting
tumour cells and/or T lymphocytes was tested by flow cytometry. For
this purpose, 2.5-5.times.10.sup.5 cells were incubated with 10
.mu.g/ml of scFv or 0.004-4 .mu.g/ml of titrated fusion proteins in
100 .mu.l of a suitable buffer solution (such as PBS+bovine serum
albumin, or other acceptable buffer solution) per well on a 96-well
V-shaped plate at 4.degree. C. for 2 h. After washing three times
with 150 .mu.l of a suitable buffer solution, cells were incubated
with FITC-conjugated anti-His.sub.6 tag or anti-Flag Tag or
anti-myc Tag antibody at RT for 30 min and washed again two times.
For gating and testing for background staining, additionally two
samples of each cell type were prepared, one of unstained cells and
one stained with FITC-conjugated anti-His.sub.6 tag antibody
without any protein. Finally, cells were resuspended in 500 .mu.l
of a suitable buffer solution, transferred into FACS tubes, and
analysed by flow cytometry.
[0528] PBMC Stimulation Assay:
[0529] Stimulatory properties of recombinant proteins were tested
in a cell-based stimulation assay. Thereby, T-cell activation
mediated by bispecific antibodies and "tridomain constructs" was
determined by measuring PBMC stimulation in terms of the IL-2
release induced.
[0530] Measurement of stimulatory Activity of Constructs:
[0531] CD45 pos/HLA A2 myeloma cell line U266 were seeded in a
flat-bottomed 96-well cell culture plate at a density of 105 cells
per well in 100 .mu.l of culture medium. Titrated stimulatory
proteins were added as indicated in 100 .mu.l medium per well and
were preincubated for 1 h at 37.degree. C. and 5% CO2 to ensure
sufficient binding. Unstimulated PBMC, thawed and isolated the day
before, were then added at indicated density and incubated for 24 h
at 37.degree. C. and 5% CO.sub.2. Finally, plates were centrifuged
for 5 min at 450.times.g to harvest cell-free supernatants for IL-2
quantification in ELISA.
[0532] IL-2 Sandwich ELISA:
[0533] As an indicator for the stimulatory activity, T-cell
activation induced by bispecific antibodies was measured in terms
of the IL-2 release. Upon PBMC stimulation, concentration of
secreted IL-2 in the supernatant was determined by an IL-2 sandwich
ELISA.
[0534] First, a 96-well ELISA plate was coated with 400 ng/100
.mu.l per well of mouse anti-human IL-2 antibody overnight at
4.degree. C., followed by saturation of nonspecific binding sites
with a suitable blocking buffer for 2 h at RT. In the meantime,
serial 1:2 dilutions of an IL-2 standard were prepared in duplicate
in reagent diluent starting with a maximum IL-2 concentration of
1,000 pg/ml. Then, supernatants containing IL-2 were 1:3 diluted in
RPMI 1640 medium containing 10% FCS and Pen-Strep
(Penicillin-Streptomycine). Both diluted supernatants and standards
were transferred into the ELISA plate and incubated for 2 h at RT.
Following, IL-2 was detected by incubation with 17.5 ng/100 .mu.l
per well of biotinylated goat anti-human IL-2 antibody for 2 h at
RT. Finally, 100 .mu.l of HRP-conjugated streptavidin, 1:200
diluted in reagent diluent, was added per well and incubated for 20
min at RT. Each plate was developed using a TMB substrate solution.
In order to achieve a background signal, at least 2 wells on each
plate were incubated with reagent diluent or medium only and the
detecting antibody plus TMB. Between each incubation step, the
plate was washed three times with PBS containing 0.05% Tween-20 and
once with PBS only.
[0535] A seven point standard curve was created by plotting the
absorbance signals of each standard sample against the IL-2
concentration. Thus, the amount of IL-2 of each supernatant could
be determined by interpolation of the standard curve fitted with
the nonlinear regression equation for one phase exponential
association using GraphPad Prism.RTM..
[0536] IFN-.gamma. ELISA (Alternative of Example 4):
[0537] In 100 .mu.l cell culture supernatant the IFN-.gamma.
concentration was measured using the human IFN-.gamma. ELISA Kit
(Invitrogen.TM.) after manufacturer's protocol. Briefly 50 .mu.L of
Incubation Buffer was added to each well of a precoated 96-well
plat. 50 .mu.L of the Standard Diluent Buffer to zero wells. 50
.mu.L of standards and samples to each well. 50 .mu.L of
biotinylated Hu IFN-.gamma. Biotin Conjugate solution into each
well. Taped gently on the side of the plate to mix. Covered plate
with plate cover and incubate for 1 hour and 30 minutes at room
temperature. Thoroughly aspirated solution from wells and discarded
the liquid. Washed wells 4 times. Added 100 .mu.L Streptavidin-HRP
Working Solution to each well. Covered plate with the plate cover
and incubated for 45 minutes at room temperature. Thoroughly
aspirated solution from wells and discarded the liquid. Added 100
.mu.L of Stabilized Chromogen to each well. The liquid in wells
turned blue. We incubated for 15-30 minutes at room temperature and
in the dark. Added 100 .mu.L of Stop Solution to each well. Taped
side of plate gently to mix. The solution in the wells changed from
blue to yellow. The absorbance of each well was read with a BioRad
plate reader at 450 nm.
[0538] Cytotoxicity Assay:
[0539] The HLA-A2/CD45 positive cell line U266 or myeloma cell line
U266 was labelled with 10 .mu.M CFSE (Invitrogen Vybrant CFDA SE
Cell Tracer Kit) in 350 .mu.l PBS for 10 min at room temperature
(RT) in the dark. The labelling reaction was stopped by the
addition of 5 ml fetal calf serum (FCS), followed by a 1-minute
incubation at RT. After 2 washes, the CFSE-labelled target cells
were resuspended in assay medium and co-incubated with Peripheral
Blood Mononuclear Cells (PBMC) from a HLA-A2 negative healthy donor
at a ration of 1:10 (5*10.sup.5 U266 and 5*10.sup.6 PBMCs in 2 ml)
and 27 nM of antibody constructs as indicated. A sample treated
with Triton was used as positive control (100% lysis) and a sample
without antibody construct as negative control (0% lysis). After 24
h, apoptotic cells were visualized by 7AAD stain (Biozol, 10 min at
RT) and % specific Lysis of CFSE labelled U266 cells was calculated
employing flow cytometry techniques.
[0540] Caspase-3 Assay (Alternative of Example 4):
[0541] Staining was performed after co-incubating of the target
cells with T-cells (tumor cells: T-cells ratio 2:1) with or without
the specific polypeptides for 4 h. Surface staining for HLA-A2 and
CD45 was performed first, followed by fixation and permeabilization
(Fix+Perm, BD Biosciences). Activated Caspase-3 antibody was then
added for 30 min. (BD Biosciences). Cells were washed with
1.times.PBS+5% human serum (HS, PAA Laboratories) and analyzed on a
BD-FACS Canto-II. % specific apoptosis was calculated as (%
experimental value-spontaneous release)/(100%-% spontaneous
release)*100.
[0542] ALAMARBLUE.RTM. Assay (Alternative of Example 4):
[0543] The ALAMARBLUE.RTM. assay (Abd Serotec) was used to measure
proliferation and viability of cells after exposure to toxins.
Briefly, cells were grown in 100 .mu.l cell culture medium per well
(96 well plate). For analysis 10 .mu.l ALAMARBLUE.RTM. was added
per well and incubated in the incubator for 30-120 minutes. The
absorbance was read with a BioRad plate reader at 570 nM and 600
nM. For blank media only was used. The percent difference in
reduction of cell proliferation between the different polypeptide
groups was calculated as indicated by the manufacturer, using cells
growing in culture without toxin as control.
[0544] Digoxigenin Assay (Alternative of Example 4):
[0545] First peroxidase from horseradish (HRP, Sigma-Aldrich Chemie
gmbH) was labelled with digoxigenin NETS-ester (Sigma-Aldrich
Chemie gmbH) in a 1/3 molar ratio. Dig-HRP was cleaned up with
micro Bio-Spin.TM. chromatography columns (BioRad and and stored at
4.degree. C. in the dark. Colo-206F cells were first incubated with
indicated polypeptides at various concentrations for 90 minutes.
Cells were washed with PBS and resuspended in cell culture medium
with Dig-HRP and incubated for 30 minutes. Afterward cells were
washed twice with PBS and resuspended in 50 .mu.l PBS. 50 .mu.L of
Stabilized Chromogen (Invitrogen.TM.) was added for 15-30 minutes
at room temperature in the dark. 50 .mu.L of Stop Solution was
added and the absorbance was read with a BioRad plate reader at 450
nm.
[0546] Mice (Alternative of Example 4):
[0547] The HLA.A2 transgenic, immunodeficient mice (NodScid
IL-2rg-/-HLA.A2/B2m tg; Stock number 14570, The Jackson Laboratory,
Bar Harbor, Me., USA) for the in vivo experiment (FIG. 12A) were
maintained in our certified animal facility (ZEMM, Center for
experimental molecular medicine, University hospital Wurzburg) in
accordance with European guidelines. Female Mice, 6-10 weeks old,
were divided into five groups, six mice per group (n=30).
5.times.10.sup.6 THP-1 cells, 1.25.times.10.sup.5CMV specific CD8+
T-cells (tumour cell: T-cell ratio 40/1) and the 0.5 .mu.g of the
polypeptides were injected intraperitoneally (i.p.) as indicated.
After injection, mice were monitored by daily inspection. A second
injection of 1.16.times.10.sup.5 CMV-specific CD8+ T-cells/mouse
was given at day 13 and injections of the polypeptides were
repeated every three days a week. The animals were sacrificed when
the increase in body weight was greater 80% or if they appeared
moribund according to institutional guidelines.
[0548] Domain structure, affinity tags and linkers of the
constructs or polypeptides used in Examples 5-9 or FIG. 4-FIG. 11
are shown in FIG. 3. These constructs and all constructs or
polypeptides used in FIG. 4-FIG. 30 were prepared as described in
Examples 1 and 2. Cell culture and functional assays in Examples
5-9 and culture, functional assays and in vivo work as to FIG.
4-FIG. 30 were carried out as described in Examples 3 and 4.
Example 5
[0549] The CD45 and HLA A2 positive myeloma target cell line U266
was co-incubated with HLA A2 negative T cells (monocyte depleted
PBMCs (peripheral blood mononuclear cells) from a healthy donor and
varying amounts of HLA A2 and CD3 bispecific antibody constructs as
indicated (Numbers 85, 82, 75 and 71). PHA-L (phytohemagglutinin, a
lectin that causes unspecific stimulation of T cells; 1 .mu.g/ml
final concentration) was used as positive control and single chain
scFv constructs with specificity for HLA A2 (Number 4) or CD3
(Number 36) were investigated. IL2 (Interleukin-2) production by T
cells was measured by ELISA techniques. No IL2 production was found
in experimental situations without any constructs. Data obtained is
depicted in FIG. 4.
Example 6
[0550] The CD45 and HLA A2 positive myeloma target cell line U266
was co-incubated with HLA A2 negative T cells (monocyte depleted
PBMCs) from a healthy donor and varying amounts of "tridomain
constructs" added either separately (Numbers 42, 45, 55; numbers
referring to constructs as depicted in FIG. 3) or in combinations
(42+45 or 42+55). PHA-L and single chain scFv constructs with
specificity for CD45 (Numbers 46 and 17) were given as controls.
IL2 production by T cells was measured by ELISA techniques. No IL
production was found in experimental situations without any
constructs. Data obtained is depicted in FIG. 5.
Example 7
[0551] The CD45 and HLA A2 positive myeloma target cell line U266
was co-incubated with HLA A2 negative T cells (monocyte depleted
PBMCs) from a healthy donor and the HLA A2 and CD3 bispecific
antibody construct alone (number 71, 27 nM) or in combination with
single chain scFv constructs that block the antigenic epitopes on
HLA A2 (Number 4, hundredfold excess compared to the concentration
of construct 71, i.e. 2700 nM) or CD3 (Number 36, ninefold excess
compared to the concentration of construct 71, i.e. 243 nM). IL2
production by T cells was measured by ELISA techniques and PHA-L is
given as control. Data obtained is depicted in FIG. 6.
Example 8
[0552] The CD45 and HLA A2 positive myeloma target cell line U266
was co-incubated with HLA A2 negative T cells (monocyte depleted
PBMCs) from a healthy donor and the combination of constructs 42
and 45. T cell stimulatory function was blocked by single chain
constructs specific for HLA A2 (number 4) or CD45 (number 46).
Complementation of T cell stimulatory function was tested by
assaying constructs 42 and 45 separately or the single chain scFv
construct directed against CD3 (number 36). IL2 production by T
cells was measured by ELISA techniques and PHA-L is given as
control. Concentration of constructs was 27 nM, unless indicated
otherwise. ("9.times." indicates a concentration of 243 nM,
"100.times." a concentration of 2700 nM.) Data obtained is depicted
in FIG. 7.
Example 9
[0553] The CD45 and HLA A2 positive myeloma target cell line U266
was co-incubated with HLA A2 negative T cells (monocyte depleted
PBMCs) from a healthy donor and the combination of constructs 42
and 55. T cell stimulatory function was blocked by single chain
constructs specific for HLA A2 (number 4) or CD45 (number 46).
Complementation of T cell stimulatory function was tested by
assaying constructs 42 and 55 separately or the single chain scFv
construct directed against CD3 (number 36). IL2 production by T
cells was measured by ELISA techniques and PHA-L is given as
control. Concentration of constructs was 27 nM, unless indicated
otherwise. ("9.times." indicates a concentration of 243 nM,
"100.times." a concentration of 2700 nM.) Data obtained is depicted
in FIG. 8.
[0554] The results of the preceding Examples clearly demonstrate
that two constructs (42+45) or (42+55) first have to bind their
ligands on the surface of a single cell in order to subsequently
complement T cell engaging function.
Example 10
[0555] Lysis of the CD45 and HLA A2 positive myeloma target cell
line U266 by HLA A2 negative T cells (monocyte depleted PBMCs) in
the presence of V.sub.LCD3-scFvHLA A2 (27 nMol) or V.sub.H-scFvCD45
(27 nMol) or the combination of both of these constructs (27 nMol
each) was determined using flow cytometry based techniques. Percent
lysis was calculated by apoptotic U266 cells divided through total
U266 cells and background apoptosis was subtracted. Data obtained
is depicted in FIG. 9.
Example 11
[0556] As parts of the final bipartite construct, two polypeptides
were designed, each composed of an antigen-binding single-chain
variable fragment (scFv) and either the variable light (V.sub.L) or
variable heavy chain (V.sub.H) domain of a T cell-activating
anti-CD3 antibody (FIG. 10). When these two polypeptides bind their
respective antigens on the surface of a single cell, the V.sub.L
and V.sub.H domains interact with each other to reconstitute the
original anti-CD3 binding site. The thus on-target formed
trispecific heterodimer engages and stimulates T cells for tumor
cell destruction.
[0557] This scenario is fully validated in vitro when T lymphocytes
are confronted with target cells that have been incubated with the
two different polypeptides. As proof of principle, major
histocompatibility antigen HLA-A2 and the hematopoetic lineage
marker CD45 were targeted as first and second antigens, which both
are expressed on U266 myeloma cells, primary cells from a patient
with pro-lymphocytic leukemia of the T cell lineage (T-PLL), and
THP-1 acute myeloid leukemic blasts (FIG. 11). Due to the described
V.sub.L/V.sub.H interaction, the now trispecific heterodimer
potently stimulates T cells to secrete interleukin-2 (IL-2) (FIG.
11A) and to lyse the labeled tumor cells at nanomolar concentration
(FIG. 11B), the cytotoxic efficacy being quite similar to that of a
bispecific T cell-activating antibody, which was employed as a
positive control (FIG. 11A, left panel), Mack, 1995, Proc Natl Acad
Sci 92, 7021-7025. When the polypeptides were added separately from
each other, they did not induce T lymphocytes to lyse target cells.
These results are in line with structural data indicating that
both, V.sub.H and V.sub.L domains are required to confer sufficient
affinity to the target antigen (FIG. 11A, FIG. 11B), Colman, 1987,
Nature 326, 358-363; Amit, 1986, Science 233, 747-753. Moreover,
the results reveal that possible homodimerization of either V.sub.H
or V.sub.L arms results in a negligible measurable biological
effect.
[0558] To demonstrate that the two molecules must first bind their
antigens on the surface of the target cell for V.sub.H/V.sub.L
heterodimerization to occur, single-chain variable fragments
specific for HLA-A2 and CD45 were used to block the respective
epitopes on the target. As shown in FIG. 11C, when present in great
excess, these inhibitors prevented the two polypeptides from
triggering T cells in a dose-dependent manner. Furthermore, T cells
were not stimulated when the target cells were omitted (data not
shown) or when target cells were probed that express CD45 only
(RAJI cells, FIG. 11D) or neither target molecule (KMS-12-BM, FIG.
11D).
Example 12
[0559] For in vivo proof of concept, a model of allogeneic mismatch
stem cell transplantation was resorted in which a patient's
residual leukemic and hematopoietic cells, all HLA-A2 and
CD45-positive, must be eliminated to give the allogeneic donor stem
cells (HLA-A2-negative, CD45-positive) a chance to engraft and to
reconstitute hematopoiesis (see FIG. 2). To put the specificity of
the bipartite construct to the test, immunodeficient mice
expressing the human HLA-A2 transgene on virtually all nucleated
cells were used, the question being whether HLA-A2-positive but
CD45-negative murine tissues would suffer collateral damage. THP-1
cells were injected intraperitoneally with or without CD8 T
lymphocytes from an HLA-A2-negative donor, which had been selected
for specificity to cytomegalovirus (CMV) to avoid human anti-murine
immune reactivity. Intraperitoneal tumors developed rapidly in mice
that did not receive the polypeptides, and in mice treated either
with single molecule types or with the combination of both
polypeptides but without T cells. In all instances, fatal
disseminated disease developed within 3 to 4 weeks (FIG. 12A). In
stark contrast, all tumor-bearing mice treated with T cells and
repeated injections of both polypeptides survived the end of the
experiment on day 31, albeit with palpable tumors at the injection
site. These results clearly show that the bipartite construct truly
redirects T cells irrespective of their specificity at tumor cells
that simultaneously express both target molecules (HLA-A2 and CD45)
in vivo. As an aside, a T cell recruiting bispecific antibodies
against HLA-A2 would wreak havoc by redirecting T cells against all
HLA-A2 positive murine tissues. Likewise, a CD45-binding bispecific
antibody would have mediated lysis of all hematopoietic cells,
including THP-1 leukemic blasts and T cells from the donor. In our
set-up, however, injection of HLA-A2-specific polypeptide into the
HLA-A2 transgenic animals caused no apparent toxicity.
[0560] To further examine possible toxicity to bystanders, we
employed a highly sensitive apoptosis assay on THP-1 cells and
HLA-A2-negative but CD45-positive monocytes, the latter
representing the healthy bystander compartment. As depicted in FIG.
12B, we observed caspase-3 activation in THP-1 cells but not in
monocytes treated in the same well with the combination of the
polypeptides or the bispecific positive control and donor T cells.
THP-1 cells cultured with T cells and individual polypeptides were
unaffected. These observations again clearly show initiation of
apoptosis exclusively in the double antigen positive target
population, while the HLA-A2-negative bystander cells are spared.
These experiments model quite accurately the dire clinical
situation of leukemia patients with a HLA-mismatched stem cell
transplant. The combinatorial approach of using a distinctive HLA
molecule and CD45 aims at enhancing the desired graft versus
leukemia effects by retargeting the donor's T cells against
leukemic blasts of both, myeloid and lymphoid origin.
Example 13
[0561] To venture into solid tumors, we targeted the combinatorial
approach to epithelial cell adhesion molecule (EpCAM) and epidermal
growth factor receptor (EGFR) antigens. Both antigens are
over-expressed in various carcinomas and have been extensively
studied in clinical phase II and III trials. The expression of EGFR
is closely associated with cell proliferation, while EpCAM is
present at the basolateral surface of virtually all simple
epithelia and was recently found to act like a signaling protein in
the Wnt pathway, Maetzel, 2009, Nat Cell Biol 11, 162-171. As FIG.
13A illustrates, the two polypeptides trigger the release of
interferon-.gamma. (IFN.gamma.) from co-incubated donor lymphocytes
and mediate apoptosis of the double-positive cancer cell line
COLO-206F at nanomolar concentrations (FIG. 13a, b), but only when
given in combination and not with either part alone. As a
descendant of neuroepithelial tissue, the melanoma cell line FM-55
lacks EpCAM, and therefore was completely resistant to the
polypeptides (FIG. 13a, b). Though the expression of EGFR and EpCAM
overlaps broadly on proliferating carcinoma cells,
non-proliferating epithelial cells, e.g., of liver and pancreas
solely expressing EGFR or EpCAM antigens, respectively, should be
less susceptible to or protected from the two-pronged attack.
Notably, hepatic and pancreatic toxicities have been dose-limiting
for high-affinity monoclonal EpCAM antibodies in clinical trials
(for review see, Munz, 2010, Cancer Cell Int 10:44).
Example 14
[0562] The further validation of the bipartite functional
complementation strategy was performed by extensive in vitro
experiments, using a combination of different polypeptides,
targeting various cell surface antigens on different human cell
lines.
[0563] The HLA A2 positive human tumor cell lines FM-55 (myeloma),
Colo-206F (colon cancer) and OVCAR (ovarian cancer) were
co-incubated with HLA-A2 negative PBMCs from a healthy donor,
polypeptide against HLA-A2 (CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L))
and with a second polypeptide targeting either CEA
(CD3(V.sub.H)-CEA(V.sub.H-V.sub.L)), EGFR
(CD3(V.sub.H)-EGFR(V.sub.H-V.sub.L)) or Her2
(CD3(V.sub.H)-Her2(V.sub.H-V.sub.L)). IL2 or IFN-.gamma. production
by lymphocytes was measured by ELISA techniques. These data
demonstrate that (i) a specific combination of antigens, an antigen
signature, can be expressed on carcinomas of various origin (skin,
neuroepithelial, gut and ovary tissue), (ii) the antigen signature
is approachable with our bipartite functional complementation
strategy using a set of polypeptides specific for the antigen
signature. Data obtained are depicted in FIG. 14, FIG. 15 and FIG.
16.
Example 15
[0564] To demonstrate the exchangeability of the functional domain,
the fragments F1 and F2 of a set of polypeptides were exchanged
with each other, retaining their specific complementation ability
for on target restoration of their original antibody domain to
engage T cells. Therefore the set of polypeptides against the CD45
and HLA-A2 target antigen was used. The polypeptide against CD45
had CD3(V.sub.L) as fragment F1 and the polypeptide against HLA-A2
had CD3(V.sub.H) as fragment F2. The CD45 and HLA-A2 positive
myeloma cell line U266 was co-incubated with HLA-A2 negative T
cells from a healthy donor and polypeptides against CD45
(CD3(V.sub.L)-CD45(V.sub.H-V.sub.L)) and HLA-A2
(CD3(V.sub.H)-HLA-A2(V.sub.H-V.sub.L)) in varying amounts. T cell
engagement was assessed by reactive IFN.gamma. production, measured
by ELISA techniques. No IFN.gamma. production was found in
experimental situations without any polypeptides. Data obtained is
depicted in FIG. 17.
Example 16
[0565] The bipartite functional complementation strategy was
further tested by targeting a set of antigens, already used as
targets for antibody therapy of cancer (EGFR, EpCAM and Her2) (Her2
is a target for Trastuzumab in breast cancer, EGFR is a target for
Cetuximab in colorectal cancer and EpCAM is a target for
Catumazumab for the treatment of neoplastic ascites). The EGFR,
EpCAM and Her2 positive cells (Colo-206F, CX-1 and OVCAR) were
co-incubated with PBMCs from a healthy donor and the combination of
polypeptides against EGFR (CD3(V.sub.H)-EGFR(V.sub.H+V.sub.L)),
EpCAM (CD3(V.sub.L)-EpCAM(V.sub.H+V.sub.L)) and Her2
(CD3(V.sub.H)-Her2(V.sub.H+V.sub.L)). Complementation of lymphocyte
stimulatory function was assessed by reactive IFN.gamma.
production, measured by ELISA techniques. No IFN.gamma. production
was found in experimental situations without any polypeptides. Data
obtained is depicted in FIG. 18 and FIG. 19.
Example 17
[0566] To test an antigen combination with close clinical
correlation, the combination CD45 and CD138 was used to target
human multiple myeloma (MM) cells. The majority of human MM cells
are positive for CD45 and CD138. A T cell recruiting bispecific
antibodies against CD45 would kill all hematopoetic cells of a
patient and against CD138 would cause severe side effects because
of its expression on various normal tissues (epithelial cells,
endothelia, trophoblastic cells and glandular cells of the GI
tract, The Human Protein Atlas, Version: 10.0, Atlas updated: 2012
Sep. 12). In contrast the combination of CD45 and CD138 is found
exclusively on plasma cells and MM cells and is therefore a good
antigen signature for the targeted therapy approach. The CD45 and
CD138 positive human multiple myeloma cell line AMO-1 was
co-incubated with PBMCs from a healthy donor and the combination of
polypeptides against CD45 (CD3(V.sub.L)-CD45(V.sub.H+V.sub.L)) and
CD138 (CD3(V.sub.H)-CD138(V.sub.H+V.sub.L)). Complementation of
lymphocyte stimulatory function was assessed by reactive IFN.gamma.
production, measured by ELISA techniques. No IFN.gamma. production
was found in experimental situations with single polypeptides or
without any polypeptides. Data obtained is depicted in FIG. 20.
Example 18
[0567] A further application of the bipartite functional
complementation strategy is to target single antigens on the cell
surface and to kill single antigen positive tumor cells. One major
drawback for T cell recruiting bispecific antibodies with
functional antiCD3 binding sides are severe side effects caused by
unspecific T-cell activation and cytokine release (Linke, R. et al.
Catumaxomab: clinical development and future directions. MAbs 2,
129-136 (2010)). The advantage of this bipartite functional
complementation strategy is the fact, antibodies that the T-cell
activating antiCD3 functional domain is exclusively restored on the
target cell. Without the target cell, no T-cell activating domain
is present. The CD45 and CD138 positive human multiple myeloma
cells AMO-1 and U266 were co-incubated with PBMCs from a healthy
donor and the combination of polypeptides against a single target
antigen, either CD138
(CD3(V.sub.H)-CD138(V.sub.H+V.sub.L)+CD3(V.sub.L)-CD138(V.sub.H+V.sub.L))
or CD45
(CD3(V.sub.H)-CD45(V.sub.H+V.sub.L)+CD3(V.sub.L)-CD45(V.sub.H+V.s-
ub.L)). Complementation of lymphocyte stimulatory function was
assessed by reactive IFN.gamma. production, measured by ELISA
techniques. No IFN.gamma. production was found in experimental
situations with single polypeptides or without any polypeptides.
Data obtained are depicted in FIG. 21 and FIG. 22. In FIG. 23 the
single antigen approach is illustrated, by using a set of
polypeptides targeting two different epitopes (upper part) or the
same epitope (lower part) on the target antigen A1.
Example 19
[0568] This is an example to demonstrate that the functional
complementation strategy can be further elaborated for targeted
payload delivery and that different effector ways are possible to
kill a target cell. By complementing the F1 and F2 fragments of a
set of bound polypeptides on target, the newly formed antibody
binding site can bind any molecule it is specific for. In order to
direct a HIS-tagged payload precisely to a target cell, the V.sub.H
and V.sub.L fragments of an anti-HIS(hexa-histidine)-antibody were
used. After simultaneous binding of polypeptide 1
(antiHis(V.sub.L)-CD45(V.sub.H-V.sub.L) and polypeptide 2
(antiHis(V.sub.H)-HLA-A2(V.sub.H-V.sub.L) to their specific target
antigens CD45 and HLA-A2, a hexa-histidine binding site is
complemented on target that binds histidine labeled payloads with
high high affinity. The payload be a HIS-tagged toxin as given in
this example here. The CD45 and HLA-A2 positive cells THP-1 were
co-incubated with a histidine(His)-tagged Clostridium perfringens
Iota toxin component Ia (FIG. 24) or a histidine(His)-tagged Shiga
toxin subunit A (FIG. 25, FIG. 26) in combination with polypeptides
against CD45 (antiHis(V.sub.L)-CD45(V.sub.H-V.sub.L)) and HLA-A2
(antiHis(V.sub.H)-HLA-A2(V.sub.H-V.sub.L)). Complementation of
his-tagged toxin binding and subsequent target cell killing was
assessed by measuring cell viability using an ALAMARBLUE.RTM.
assay. At the highest concentration of polypeptides used (80 nM), a
clear difference in target cell killing, measured as reduction in
cell viability, was found in experimental situations with a
combination of both polypeptides compared to single
polypeptides.
Example 20
[0569] To further demonstrate the versatility, flexibility and the
exchangeability of the bipartite functional complementation
strategy, the V.sub.H and V.sub.L fragments of an anti-Digoxigenin
antibody were used to identify and mark double antigen positive
cells with Digoxigenin-labeled HRP (horse raddish peroxidase). EGFR
and EpCAM positive Colo-206F cells were co-incubated with
polypeptides against EGFR (antiDig(V.sub.H)-EGFR(V.sub.H+V.sub.L))
and EpCAM (antiDig(V.sub.L)-EpCAM(V.sub.H+V.sub.L)). On target
complementation of the functional domain anti-Digoxigenin,
indicated by Digoxigenin-HRP labelling of Colo-206F cells, was
assessed by measuring the peroxidase activity, using a standard
ELISA Kit (Invitrogen.TM.). A clear difference in Dig-HRP labeled
target cells was found in experimental situation with a combination
of both polypeptides compared to single polypeptides. Data obtained
are depicted in FIG. 27.
Example 21
[0570] Using the human leukocytic antigens (HLA) as one arm for
dual antigen restricted bipartite functional complementation, this
haplotype strategy was further validated by exchanging the
functional domains of the polypeptides with V.sub.H and V.sub.L
fragments of an anti-HLA-Cw6 antibody. HLA-Cw6 positive primary
patient PBMCs were co-incubated with HLA-Cw6 negative PBMCs from a
healthy donor, polypeptide against CD45
(CD3(V.sub.L)-CD45(V.sub.H-V.sub.L)) and HLA-Cw6
(CD3(V.sub.H)-HLA-Cw6(V.sub.H-V.sub.L)). IFN.gamma. production by
lymphocytes was measured by ELISA techniques. These data
demonstrate that hematopoietic cells of patients with other
haplotypes than HLA-A2 can be targeted simply by exchanging one
targeting domain (anti HLA-A2, FIG. 5, FIG. 7-FIG. 9, FIG. 11-FIG.
12) by another (anti HLA-Cw6). Data obtained are depicted in FIG.
28.
Example 22
[0571] The dual antigen-induced bipartite functional
complementation strategy was further validated in an in vitro
patient assay, using freshly isolated primary patient cancer cells
and antigen targets already used for cancer therapy in clinic or
clinical trials (EGFR, EpCAM, CEA and Her2). Malignant cells of a
48 years old male patient with metastatic pancreatic cancer were
co-incubated with the patients own peripheral blood lymphocytes and
the combination of polypeptides against EGFR
(CD3(V.sub.H)-EGFR(V.sub.H+V.sub.L)), EpCAM
(CD3(V.sub.L)-EpCAM(V.sub.H+V.sub.L)), Her2
(CD3(V.sub.H)-Her2(V.sub.H+V.sub.L)), CEA
(CD3(V.sub.H)-CEA(V.sub.H-V.sub.L)) and HLA-A2
(CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L)). Complementation of
lymphocyte stimulatory function was assessed by reactive IFN.gamma.
production, measured by ELISA techniques. No IFN.gamma. production
was found in experimental situations without any polypeptides.
These data demonstrate the potential of this strategy to use
patients own immune cells to target and kill his malignant
transformed cells. Data obtained are depicted in FIG. 29.
Example 23
[0572] A highly enriched CD3/CD8 positive CMV restricted T-cell
population was used to show that any T cell, irrespective of its
specificity, can serve as effector cell an kill double antigen
positive tumor cells by this complementation strategy. The CD45 and
HLA-A2 positive U266 and THP-1 cells were co-incubated with
cytomegalievirus (CMV) specific T-cells from a HLA-A2 negative
healthy donor and polypeptides against CD45
(CD3(V.sub.H)-CD45(V.sub.H-V.sub.L)) and HLA-A2
(CD3(V.sub.L)-HLA-A2(V.sub.H-V.sub.L)) in varying amounts. The
bispecific tandem scFv
(CD3(V.sub.H-V.sub.L).times.HLA-A2(V.sub.H-V.sub.L))-antibody was
used as a positive control. T cell engagement was assessed by
reactive IFN.gamma. production, measured by ELISA techniques. No
IFN.gamma. production was found in experimental situations with
single polypeptides or without any polypeptides. Data obtained are
depicted in FIG. 30. Cells from the same frozen aliquot batch, CMV
specific T-cells and THP-1 cells, were used for the in vivo murine
model (FIG. 12A).
Example 24
[0573] This illustration depicts the potential to target
allergen/autoimmune specific B-cell clones with the bipartite
functional complementation strategy. By using a synthetic allergen
as targeting moiety, the allergen linked polypeptide will bind
specifically to its clonotypic B-cell receptor expressed on the
surface of the allergen specific B-cell clone. The second arm of
the bipartite strategy will use a B-cell specific polypeptide
(CD19, CD20, CD38, CD138), restricting the followed complementation
of the effector domain with subsequent target cell killing to the
allergen specific B-cell clone. The ultimate goal of this strategy
is to eliminate the B cell clone that causes and allergic or
autoimmune disease (upper part of FIG. 31) whilst sparing B cells
with other specificities or cells other than B cells (eg. mast
cells or basophilic cells) which bind the antibody responsible for
the disease via Fc-receptors (lower part of FIG. 31).
[0574] The features of the present invention disclosed in the
specification, the claims, and/or in the accompanying drawings may,
both separately and in any combination thereof, be material for
realizing the invention in various forms thereof.
Sequence CWU 1
1
2011119PRTArtificial SequenceVH anti-CD3 1Asp Val Gln Leu Val Gln
Ser Gly Ala Glu Val Lys Lys Pro Gly Ala1 5 10 15Ser Val Lys Val Ser
Cys Lys Ala Ser Gly Tyr Thr Phe Thr Arg Tyr 20 25 30Thr Met His Trp
Val Arg Gln Ala Pro Gly Gln Gly Leu Glu Trp Ile 35 40 45Gly Tyr Ile
Asn Pro Ser Arg Gly Tyr Thr Asn Tyr Ala Asp Ser Val 50 55 60Lys Gly
Arg Phe Thr Ile Thr Thr Asp Lys Ser Thr Ser Thr Ala Tyr65 70 75
80Met Glu Leu Ser Ser Leu Arg Ser Glu Asp Thr Ala Thr Tyr Tyr Cys
85 90 95Ala Arg Tyr Tyr Asp Asp His Tyr Cys Leu Asp Tyr Trp Gly Gln
Gly 100 105 110Thr Thr Val Thr Val Ser Ser 1152111PRTArtificial
SequenceVL anti-CD3 2Asp Ile Val Leu Thr Gln Ser Pro Ala Thr Leu
Ser Leu Ser Pro Gly1 5 10 15Glu Arg Ala Thr Leu Ser Cys Arg Ala Ser
Gln Ser Val Ser Tyr Met 20 25 30Asn Trp Tyr Gln Gln Lys Pro Gly Lys
Ala Pro Lys Arg Trp Ile Tyr 35 40 45Asp Thr Ser Lys Val Ala Ser Gly
Val Pro Ala Arg Phe Ser Gly Ser 50 55 60Gly Ser Gly Thr Asp Tyr Ser
Leu Thr Ile Asn Ser Leu Glu Ala Glu65 70 75 80Asp Ala Ala Thr Tyr
Tyr Cys Gln Gln Trp Ser Ser Asn Pro Leu Thr 85 90 95Phe Gly Gly Gly
Thr Lys Val Glu Ile Lys Gly Ser Ala Ala Ala 100 105
1103119PRTArtificial SequenceVH anti-CD3 3Asp Ile Lys Leu Gln Gln
Ser Gly Ala Glu Leu Ala Arg Pro Gly Ala1 5 10 15Ser Val Lys Met Ser
Cys Lys Thr Ser Gly Tyr Thr Phe Thr Arg Tyr 20 25 30Thr Met His Trp
Val Lys Gln Arg Pro Gly Gln Gly Leu Glu Trp Ile 35 40 45Gly Tyr Ile
Asn Pro Ser Arg Gly Tyr Thr Asn Tyr Asn Gln Lys Phe 50 55 60Lys Asp
Lys Ala Thr Leu Thr Thr Asp Lys Ser Ser Ser Thr Ala Tyr65 70 75
80Met Gln Leu Ser Ser Leu Thr Ser Glu Asp Ser Ala Val Tyr Tyr Cys
85 90 95Ala Arg Tyr Tyr Asp Asp His Tyr Cys Leu Asp Tyr Trp Gly Gln
Gly 100 105 110Thr Thr Leu Thr Val Ser Ser 1154106PRTArtificial
SequenceVL anti-CD3 4Asp Ile Gln Leu Thr Gln Ser Pro Ala Ile Met
Ser Ala Ser Pro Gly1 5 10 15Glu Lys Val Thr Met Thr Cys Arg Ala Ser
Ser Ser Val Ser Tyr Met 20 25 30Asn Trp Tyr Gln Gln Lys Ser Gly Thr
Ser Pro Lys Arg Trp Ile Tyr 35 40 45Asp Thr Ser Lys Val Ala Ser Gly
Val Pro Tyr Arg Phe Ser Gly Ser 50 55 60Gly Ser Gly Thr Ser Tyr Ser
Leu Thr Ile Ser Ser Met Glu Ala Glu65 70 75 80Asp Ala Ala Thr Tyr
Tyr Cys Gln Gln Trp Ser Ser Asn Pro Leu Thr 85 90 95Phe Gly Ala Gly
Thr Lys Leu Glu Leu Lys 100 1055122PRTArtificial SequencehuMAb
anti-CD variant 9 VH 5Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly1 5 10 15Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly
Tyr Ser Phe Thr Gly Tyr 20 25 30Thr Met Asn Trp Val Arg Gln Ala Pro
Gly Lys Gly Leu Glu Trp Val 35 40 45Ala Leu Ile Asn Pro Tyr Lys Gly
Val Ser Thr Tyr Asn Gln Lys Phe 50 55 60Lys Asp Arg Phe Thr Ile Ser
Val Asp Lys Ser Lys Asn Thr Ala Tyr65 70 75 80Leu Gln Met Asn Ser
Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95Ala Arg Ser Gly
Tyr Tyr Gly Asp Ser Asp Trp Tyr Phe Asp Val Trp 100 105 110Gly Gln
Gly Thr Leu Val Thr Val Ser Ser 115 1206113PRTArtificial
SequencehuMAb anti-CD variant 1 VL 6Asp Ile Gln Met Thr Gln Ser Pro
Ser Ser Leu Ser Ala Ser Val Gly1 5 10 15Asp Arg Val Thr Ile Thr Cys
Arg Ala Ser Gln Asp Ile Arg Asn Tyr 20 25 30Leu Asn Trp Tyr Gln Gln
Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45Tyr Tyr Thr Ser Arg
Leu Glu Ser Gly Val Pro Ser Arg Phe Ser Gly 50 55 60Ser Gly Ser Gly
Thr Asp Tyr Thr Leu Thr Ile Ser Ser Leu Gln Pro65 70 75 80Glu Asp
Phe Ala Thr Tyr Tyr Cys Gln Gln Gly Asn Thr Leu Pro Trp 85 90 95Thr
Phe Gly Gln Gly Thr Lys Val Glu Ile Lys Arg Thr Ile Lys Arg 100 105
110Thr7119PRTArtificial SequenceAnti-CD3 VH (L2K) 7Asp Ile Lys Leu
Gln Gln Ser Gly Ala Glu Leu Ala Arg Pro Gly Ala1 5 10 15Ser Val Lys
Met Ser Cys Lys Thr Ser Gly Tyr Thr Phe Thr Arg Tyr 20 25 30Thr Met
His Trp Val Lys Gln Arg Pro Gly Gln Gly Leu Glu Trp Ile 35 40 45Gly
Tyr Ile Asn Pro Ser Arg Gly Tyr Thr Asn Tyr Asn Gln Lys Phe 50 55
60Lys Asp Lys Ala Thr Leu Thr Thr Asp Lys Ser Ser Ser Thr Ala Tyr65
70 75 80Met Gln Leu Ser Ser Leu Thr Ser Glu Asp Ser Ala Val Tyr Tyr
Cys 85 90 95Ala Arg Tyr Tyr Asp Asp His Tyr Cys Leu Asp Tyr Trp Gly
Gln Gly 100 105 110Thr Thr Leu Thr Val Ser Ser 1158106PRTArtificial
SequenceAnti-CD3 VL (L2K) 8Asp Ile Gln Leu Thr Gln Ser Pro Ala Ile
Met Ser Ala Ser Pro Gly1 5 10 15Glu Lys Val Thr Met Thr Cys Arg Ala
Ser Ser Ser Val Ser Tyr Met 20 25 30Asn Trp Tyr Gln Gln Lys Ser Gly
Thr Ser Pro Lys Arg Trp Ile Tyr 35 40 45Asp Thr Ser Lys Val Ala Ser
Gly Val Pro Tyr Arg Phe Ser Gly Ser 50 55 60Gly Ser Gly Thr Ser Tyr
Ser Leu Thr Ile Ser Ser Met Glu Ala Glu65 70 75 80Asp Ala Ala Thr
Tyr Tyr Cys Gln Gln Trp Ser Ser Asn Pro Leu Thr 85 90 95Phe Gly Ala
Gly Thr Lys Leu Glu Leu Lys 100 1059119PRTArtificial
SequenceAnti-CD3 VH (145.2C11) 9Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Lys1 5 10 15Ser Leu Lys Leu Ser Cys Glu Ala
Ser Gly Phe Thr Phe Ser Gly Tyr 20 25 30Gly Met His Trp Val Arg Gln
Ala Pro Gly Arg Gly Leu Glu Ser Val 35 40 45Ala Tyr Ile Thr Ser Ser
Ser Ile Asn Ile Lys Tyr Ala Asp Ala Val 50 55 60Lys Gly Arg Phe Thr
Val Ser Arg Asp Asn Ala Lys Asn Leu Leu Phe65 70 75 80Leu Gln Met
Asn Ile Leu Lys Ser Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95Ala Arg
Phe Asp Trp Asp Lys Asn Tyr Trp Gly Gln Gly Thr Met Val 100 105
110Thr Val Ser Ser Ala Lys Thr 11510110PRTArtificial
SequenceAnti-CD3 VL (145.2C11) 10Asp Ile Gln Met Thr Gln Ser Pro
Ser Ser Leu Pro Ala Ser Leu Gly1 5 10 15Asp Arg Val Thr Ile Asn Cys
Gln Ala Ser Gln Asp Ile Ser Asn Tyr 20 25 30Leu Asn Trp Tyr Gln Gln
Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45Tyr Tyr Thr Asn Lys
Leu Ala Asp Gly Val Pro Ser Arg Phe Ser Gly 50 55 60Ser Gly Ser Gly
Arg Asp Ser Ser Phe Thr Ile Ser Ser Leu Glu Ser65 70 75 80Glu Asp
Ile Gly Ser Tyr Tyr Cys Gln Gln Tyr Tyr Asn Tyr Pro Trp 85 90 95Thr
Phe Gly Pro Gly Thr Lys Leu Glu Ile Lys Arg Ala Asp 100 105
11011114PRTArtificial SequenceAnti-HIS VH 11Gln Val Gln Leu Gln Gln
Ser Gly Pro Glu Asp Val Lys Pro Gly Ala1 5 10 15Ser Val Lys Ile Ser
Cys Lys Ala Ser Gly Tyr Thr Phe Thr Asp Tyr 20 25 30Tyr Met Asn Trp
Val Lys Gln Ser Pro Gly Lys Gly Leu Glu Trp Ile 35 40 45Gly Asp Ile
Asn Pro Asn Asn Gly Gly Thr Ser Tyr Asn Gln Lys Phe 50 55 60Lys Gly
Arg Ala Thr Leu Thr Val Asp Lys Ser Ser Ser Thr Ala Tyr65 70 75
80Met Glu Leu Arg Ser Leu Thr Ser Glu Asp Ser Ser Val Tyr Tyr Cys
85 90 95Glu Ser Gln Ser Gly Ala Tyr Trp Gly Gln Gly Thr Thr Val Thr
Val 100 105 110Ser Ala12116PRTArtificial SequenceAnti-HIS VL 12Asp
Tyr Lys Asp Ile Leu Met Thr Gln Thr Pro Ser Ser Leu Pro Val1 5 10
15Ser Leu Gly Asp Gln Ala Ser Ile Ser Cys Arg Ser Ser Gln Ser Ile
20 25 30Val His Ser Asn Gly Asn Thr Tyr Leu Glu Trp Tyr Leu Gln Lys
Pro 35 40 45Gly Gln Ser Pro Lys Leu Leu Ile Tyr Lys Val Ser Asn Arg
Phe Ser 50 55 60Gly Val Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr
Asp Phe Thr65 70 75 80Leu Lys Ile Ser Arg Val Glu Ala Glu Asp Leu
Gly Val Tyr Tyr Cys 85 90 95Phe Gln Gly Ser His Val Pro Phe Thr Phe
Gly Ser Gly Thr Lys Leu 100 105 110Glu Ile Lys Arg
11513128PRTArtificial SequenceAnti-DIG VH 13Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Lys Pro Gly Gly1 5 10 15Ser Leu Lys Leu Ser
Cys Ala Val Ser Gly Phe Thr Phe Ser Asp Tyr 20 25 30Ala Met Ser Trp
Ile Arg Gln Thr Pro Glu Asn Arg Leu Glu Trp Val 35 40 45Ala Ser Ile
Asn Ile Gly Ala Thr Tyr Ala Tyr Tyr Pro Asp Ser Val 50 55 60Lys Gly
Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Phe65 70 75
80Leu Gln Met Ser Ser Leu Gly Ser Glu Asp Thr Ala Met Tyr Tyr Cys
85 90 95Ala Arg Pro Gly Ser Pro Tyr Glu Tyr Asp Lys Ala Tyr Tyr Ser
Met 100 105 110Ala Tyr Trp Gly Pro Gly Thr Ser Val Thr Val Ser Ser
Ala Lys Thr 115 120 12514118PRTArtificial SequenceAnti-DIG VL 14Asp
Val Gln Met Thr Gln Ser Thr Ser Ser Leu Ser Ala Ser Leu Gly1 5 10
15Asp Arg Val Thr Ile Ser Cys Arg Ala Ser Gln Asp Ile Lys Asn Tyr
20 25 30Leu Asn Trp Tyr Gln Gln Lys Pro Gly Gly Thr Val Lys Leu Leu
Ile 35 40 45Tyr Tyr Ser Ser Thr Leu Leu Ser Gly Val Pro Ser Arg Phe
Ser Gly 50 55 60Arg Gly Ser Gly Thr Asp Phe Ser Leu Thr Ile Thr Asn
Leu Glu Arg65 70 75 80Glu Asp Ile Ala Thr Tyr Phe Cys Gln Gln Ser
Ile Thr Leu Pro Pro 85 90 95Thr Phe Gly Gly Gly Thr Lys Leu Glu Ile
Lys Arg Ala Asp Ala Ala 100 105 110Pro Thr Val Ser Ile Phe
1151510PRTArtificial SequenceAnti-CD3 VH CDR1 (WT) 15Gly Tyr Thr
Phe Thr Arg Tyr Thr Met His1 5 101617PRTArtificial SequenceAnti-CD3
VH CDR2 (VH5) 16Tyr Ile Asn Pro Ser Arg Gly Tyr Thr Asn Tyr Ala Asp
Ser Val Lys1 5 10 15Gly1710PRTArtificial SequenceAnti-CD3 VH CDR3
(WT) 17Tyr Tyr Asp Asp His Tyr Cys Leu Asp Tyr1 5
101810PRTArtificial SequenceAnti-CD3 VK CDR1 (WT) 18Arg Ala Ser Gln
Ser Val Ser Tyr Met Asn1 5 10197PRTArtificial SequenceAnti-CD3 VK
CDR2 (WT) 19Asp Thr Ser Lys Val Ala Ser1 5209PRTArtificial
SequenceAnti-CD3 VK CDR3 (WT) 20Gln Gln Trp Ser Ser Asn Pro Leu
Thr1 52110PRTArtificial SequenceAnti-CD3 VH CDR1 (WT) 21Gly Tyr Thr
Phe Thr Arg Tyr Thr Met His1 5 102217PRTArtificial SequenceAnti-CD3
VH CDR2 (WT) 22Tyr Ile Asn Pro Ser Arg Gly Tyr Thr Asn Tyr Asn Gln
Lys Phe Lys1 5 10 15Asp2310PRTArtificial SequenceAnti-CD3 VH CDR3
(WT) 23Tyr Tyr Asp Asp His Tyr Cys Leu Asp Tyr1 5
102410PRTArtificial SequenceAnti-CD3 VK CDR1 (WT) 24Arg Ala Ser Ser
Ser Val Ser Tyr Met Asn1 5 10257PRTArtificial SequenceAnti-CD3 VK
CDR2 (WT) 25Asp Thr Ser Lys Val Ala Ser1 5269PRTArtificial
SequenceAnti-CD3 VK CDR3 (WT) 26Gln Gln Trp Ser Ser Asn Pro Leu
Thr1 52710PRTArtificial SequenceAnti-CD3 VH CDR1 (UCHT-1) 27Gly Tyr
Ser Phe Thr Gly Tyr Thr Met Asn1 5 102817PRTArtificial
SequenceAnti-CD3 VH CDR2 (UCHT-1) 28Leu Ile Asn Pro Tyr Lys Gly Val
Ser Thr Tyr Asn Gln Lys Phe Lys1 5 10 15Asp2911PRTArtificial
SequenceAnti-CD3 VH CDR3 (UCHT-1) 29Tyr Tyr Gly Asp Ser Asp Trp Tyr
Phe Asp Val1 5 103011PRTArtificial SequenceAnti-CD3 VL CDR1
(UCHT-1) 30Arg Ala Ser Gln Asp Ile Arg Asn Tyr Leu Asn1 5
10317PRTArtificial SequenceAnti-CD3 VL CDR2 (UCHT-1) 31Tyr Thr Ser
Arg Leu Glu Ser1 5329PRTArtificial SequenceAnti-CD3 VL CDR3
(UCHT-1) 32Gln Gln Gly Asn Thr Leu Pro Trp Thr1 5338PRTArtificial
SequenceAnti-CD3 VH CDR 1 (L2K) 33Gly Tyr Thr Phe Thr Arg Tyr Thr1
5348PRTArtificial SequenceAnti-CD3 VH CDR 2 (L2K) 34Ile Asn Pro Ser
Arg Gly Tyr Thr1 53512PRTArtificial SequenceAnti-CD3 VH CDR 3 (L2K)
35Ala Arg Tyr Tyr Asp Asp His Tyr Cys Leu Asp Tyr1 5
10365PRTArtificial SequenceAnti-CD3 VL CDR 1 (L2K) 36Ser Ser Val
Ser Tyr1 5379PRTArtificial SequenceAnti-CD3 VL CDR 3 (L2K) 37Gln
Gln Trp Ser Ser Asn Pro Leu Thr1 5388PRTArtificial SequenceAnti-CD3
VH CDR 1 (145-2C11) 38Gly Phe Thr Phe Ser Gly Tyr Gly1
5398PRTArtificial SequenceAnti-CD3 VH CDR 2 (145-2C11) 39Ile Thr
Ser Ser Ser Ile Asn Ile1 5409PRTArtificial SequenceAnti-CD3 VH CDR
3 (145-2C11) 40Ala Arg Phe Asp Trp Asp Lys Asn Tyr1
5416PRTArtificial SequenceAnti-CD3 VL CDR 1 (145-2C11) 41Gln Asp
Ile Ser Asn Tyr1 5429PRTArtificial SequenceAnti-CD3 VL CDR 3
(145-2C11) 42Gln Gln Tyr Tyr Asn Tyr Pro Trp Thr1 5438PRTArtificial
SequenceAnti-HIS VH CDR1 43Gly Tyr Thr Phe Thr Asp Tyr Tyr1
5448PRTArtificial SequenceAnti-HIS VH CDR2 44Ile Asn Pro Asn Asn
Gly Gly Thr1 5457PRTArtificial SequenceAnti-HIS VH CDR3 45Glu Ser
Gln Ser Gly Ala Tyr1 54611PRTArtificial SequenceAnti-HIS VL CDR1
46Gln Ser Ile Val His Ser Asn Gly Asn Thr Tyr1 5 10479PRTArtificial
SequenceAnti-HIS VL CDR3 47Phe Gln Gly Ser His Val Pro Phe Thr1
5488PRTArtificial SequenceAnti-DIG VH CDR1 48Gly Phe Thr Phe Ser
Asp Tyr Ala1 5498PRTArtificial SequenceAnti-DIG VH CDR2 49Ile Asn
Ile Gly Ala Thr Tyr Ala1 5506PRTArtificial SequenceAnti-DIG VL CDR1
50Gln Asp Ile Lys Asn Tyr1 551123PRTArtificial SequenceAnti-HLA-A2
VH 51Gln Val Gln Leu Val Gln Ser Gly Gly Gly Val Val Gln Pro Gly
Gly1 5 10 15Ser Leu Arg Val Ser Cys Ala Ala Ser Gly Val Thr Leu Ser
Asp Tyr 20 25 30Gly Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Met 35 40 45Ala Phe Ile Arg Asn Asp Gly Ser Asp Lys Tyr Tyr
Ala Asp Ser Val 50 55 60Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser
Lys Lys Thr Val Ser65 70 75 80Leu Gln Met Ser Ser Leu Arg Ala Glu
Asp Thr Ala Val Tyr Tyr Cys 85 90 95Ala Lys Asn Gly Glu Ser Gly Pro
Leu Asp Tyr Trp Tyr Phe Asp Leu 100 105 110Trp Gly Arg Gly Thr Leu
Val Thr Val Ser Ser 115 12052108PRTArtificial SequenceAnti-HLA-A2
VL 52Asp Val Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val
Gly1 5 10 15Asp Arg Val Thr Ile Thr Cys Gln Ala Ser Gln Asp Ile Ser
Asn Tyr 20 25 30Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys
Leu Leu Ile 35 40 45Tyr Asp Ala Ser Asn Leu Glu Thr Gly Val Pro Ser
Arg Phe Ser Gly 50 55 60Ser Gly Ser Gly Thr Asp Phe Thr Phe Thr Ile
Ser Ser Leu Gln Pro65
70 75 80Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Tyr Ser Ser Phe Pro
Leu 85 90 95Thr Phe Gly Gly Gly Thr Lys Val Asp Ile Lys Arg 100
10553118PRTArtificial SequenceAnti-HLA-Cw6 VH 53Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly1 5 10 15Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45Ser Ala
Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr65 70 75
80Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys
85 90 95Ala Arg Tyr Ser Phe Ser Trp Phe Asp Val Trp Gly Gln Gly Thr
Leu 100 105 110Val Thr Val Ser Ser Ala 11554108PRTArtificial
SequenceAnti-HLA-Cw6 VL 54Asp Ile Glu Leu Thr Gln Pro Pro Ser Val
Ser Val Ala Pro Gly Gln1 5 10 15Thr Ala Arg Ile Ser Cys Ser Gly Asp
Ala Leu Gly Asp Lys Tyr Ala 20 25 30Ser Trp Tyr Gln Gln Lys Pro Gly
Gln Ala Pro Val Leu Val Ile Tyr 35 40 45Asp Asp Ser Asp Arg Pro Ser
Gly Ile Pro Glu Arg Phe Ser Gly Ser 50 55 60Asn Ser Gly Asn Thr Ala
Thr Leu Thr Ile Ser Gly Thr Gln Ala Glu65 70 75 80Asp Glu Ala Asp
Tyr Tyr Cys Gln Ser Tyr Asp Asn Phe Asp Ser Pro 85 90 95Val Phe Gly
Gly Gly Thr Lys Leu Thr Val Leu Gly 100 10555120PRTArtificial
SequenceAnti-EpCAM VH 55Glu Val Gln Leu Leu Glu Gln Ser Gly Ala Glu
Leu Val Arg Pro Gly1 5 10 15Thr Ser Val Lys Ile Ser Cys Lys Ala Ser
Gly Tyr Ala Phe Thr Asn 20 25 30Tyr Trp Leu Gly Trp Val Lys Gln Arg
Pro Gly His Gly Leu Glu Trp 35 40 45Ile Gly Asp Ile Phe Pro Gly Ser
Gly Asn Ile His Tyr Asn Glu Lys 50 55 60Phe Lys Gly Lys Ala Thr Leu
Thr Ala Asp Lys Ser Ser Ser Thr Ala65 70 75 80Tyr Met Gln Leu Ser
Ser Leu Thr Phe Glu Asp Ser Ala Val Tyr Phe 85 90 95Cys Ala Arg Leu
Arg Asn Trp Asp Glu Pro Met Asp Tyr Trp Gly Gln 100 105 110Gly Thr
Thr Val Thr Val Ser Ser 115 12056113PRTArtificial
SequenceAnti-EpCAM VL 56Glu Leu Val Met Thr Gln Ser Pro Ser Ser Leu
Thr Val Thr Ala Gly1 5 10 15Glu Lys Val Thr Met Ser Cys Lys Ser Ser
Gln Ser Leu Leu Asn Ser 20 25 30Gly Asn Gln Lys Asn Tyr Leu Thr Trp
Tyr Gln Gln Lys Pro Gly Gln 35 40 45Pro Pro Lys Leu Leu Ile Tyr Trp
Ala Ser Thr Arg Glu Ser Gly Val 50 55 60Pro Asp Arg Phe Thr Gly Ser
Gly Ser Gly Thr Asp Phe Thr Leu Thr65 70 75 80Ile Ser Ser Val Gln
Ala Glu Asp Leu Ala Val Tyr Tyr Cys Gln Asn 85 90 95Asp Tyr Ser Tyr
Pro Leu Thr Phe Gly Ala Gly Thr Lys Leu Glu Ile 100 105
110Lys57120PRTArtificial SequenceAnti-HER2 VH 57Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly1 5 10 15Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Asn Ile Lys Asp Thr 20 25 30Tyr Ile His
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45Ala Arg
Ile Tyr Pro Thr Asn Gly Tyr Thr Arg Tyr Ala Asp Ser Val 50 55 60Lys
Gly Arg Phe Thr Ile Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr65 70 75
80Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys
85 90 95Ser Arg Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp Tyr Trp Gly
Gln 100 105 110Gly Thr Leu Val Thr Val Ser Ser 115
12058107PRTArtificial SequenceAnti-HER2 VL 58Asp Ile Gln Met Thr
Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly1 5 10 15Asp Arg Val Thr
Ile Thr Cys Arg Ala Ser Gln Asp Val Asn Thr Ala 20 25 30Val Ala Trp
Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45Tyr Ser
Ala Ser Phe Leu Tyr Ser Gly Val Pro Ser Arg Phe Ser Gly 50 55 60Ser
Arg Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln Pro65 70 75
80Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln His Tyr Thr Thr Pro Pro
85 90 95Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys 100
10559119PRTArtificial SequenceAnti-EGFR-1 VH 59Gln Val Gln Leu Gln
Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Glu1 5 10 15Thr Leu Ser Leu
Thr Cys Thr Val Ser Gly Gly Ser Val Ser Ser Gly 20 25 30Asp Tyr Tyr
Trp Thr Trp Ile Arg Gln Ser Pro Gly Lys Gly Leu Glu 35 40 45Trp Ile
Gly His Ile Tyr Tyr Ser Gly Asn Thr Asn Tyr Asn Pro Ser 50 55 60Leu
Lys Ser Arg Leu Thr Ile Ser Ile Asp Thr Ser Lys Thr Gln Phe65 70 75
80Ser Leu Lys Leu Ser Ser Val Thr Ala Ala Asp Thr Ala Ile Tyr Tyr
85 90 95Cys Val Arg Asp Arg Val Thr Gly Ala Phe Asp Ile Trp Gly Gln
Gly 100 105 110Thr Met Val Thr Val Ser Ser 11560107PRTArtificial
SequenceAnti-EGFR-1 VL 60Asp Ile Gln Met Thr Gln Ser Pro Ser Ser
Leu Ser Ala Ser Val Gly1 5 10 15Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Asp Ile Ser Asn Tyr 20 25 30Leu Asn Trp Tyr Gln Gln Lys Pro
Gly Lys Ala Pro Lys Leu Leu Ile 35 40 45Tyr Asp Ala Ser Asn Leu Glu
Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60Ser Gly Ser Gly Thr Asp
Phe Thr Phe Thr Ile Ser Ser Leu Gln Pro65 70 75 80Glu Asp Ile Ala
Thr Tyr Phe Cys Gln His Phe Asp His Leu Pro Leu 85 90 95Ala Phe Gly
Gly Gly Thr Lys Val Glu Ile Lys 100 10561127PRTArtificial
SequenceAnti-CEA VH 61Ser Arg Val Ala Gln Val Gln Leu Gln Gln Ser
Gly Ala Glu Leu Ala1 5 10 15Arg Pro Gly Ala Ser Val Lys Met Ser Cys
Lys Ala Ser Gly Tyr Thr 20 25 30Phe Thr Thr Tyr Thr Ile His Trp Val
Arg Gln Arg Pro Gly His Asp 35 40 45Leu Glu Trp Ile Gly Tyr Ile Asn
Pro Ser Ser Gly Tyr Ser Asp Tyr 50 55 60Asn Gln Asn Phe Lys Gly Lys
Thr Thr Leu Thr Ala Asp Lys Ser Ser65 70 75 80Asn Thr Ala Tyr Met
Gln Leu Asn Ser Leu Thr Ser Glu Asp Ser Ala 85 90 95Val Tyr Tyr Cys
Ala Arg Arg Ala Asp Tyr Gly Asn Tyr Glu Tyr Thr 100 105 110Trp Phe
Ala Tyr Trp Gly Gln Gly Thr Thr Val Thr Val Ser Ser 115 120
12562110PRTArtificial SequenceAnti-CEA VL 62Asp Ile Glu Leu Thr Gln
Ser Pro Lys Phe Met Ser Thr Ser Val Gly1 5 10 15Asp Arg Val Asn Val
Thr Tyr Lys Ala Ser Gln Asn Val Gly Thr Asn 20 25 30Val Ala Trp Phe
Gln Gln Lys Pro Gly Gln Ser Pro Lys Val Leu Ile 35 40 45Tyr Ser Ala
Ser Tyr Arg Tyr Ser Gly Val Pro Asp Arg Phe Thr Gly 50 55 60Ser Gly
Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Asn Val Gln Ser65 70 75
80Glu Asp Leu Ala Glu Tyr Phe Cys Gln Gln Tyr His Thr Tyr Pro Leu
85 90 95Thr Phe Gly Gly Gly Thr Lys Leu Glu Ile Lys Arg Ala Asp 100
105 11063120PRTArtificial SequenceAnti-CD45 VH 63Gln Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly1 5 10 15Ser Leu Lys
Leu Ser Cys Ala Ala Ser Gly Phe Asp Phe Ser Arg Tyr 20 25 30Trp Met
Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Ile 35 40 45Gly
Glu Ile Asn Pro Thr Ser Ser Thr Ile Asn Phe Thr Pro Ser Leu 50 55
60Lys Asp Lys Val Phe Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr65
70 75 80Leu Gln Met Ser Lys Val Arg Ser Glu Asp Thr Ala Leu Tyr Tyr
Cys 85 90 95Ala Arg Gly Asn Tyr Tyr Arg Tyr Gly Asp Ala Met Asp Tyr
Trp Gly 100 105 110Gln Gly Thr Ser Val Thr Val Ser 115
12064111PRTArtificial SequenceAnti-CD45 VL 64Asp Ile Val Leu Thr
Gln Ser Pro Ala Ser Leu Ala Val Ser Leu Gly1 5 10 15Gln Arg Ala Thr
Ile Ser Cys Arg Ala Ser Lys Ser Val Ser Thr Ser 20 25 30Gly Tyr Ser
Tyr Leu His Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro 35 40 45Lys Leu
Leu Ile Tyr Leu Ala Ser Asn Leu Glu Ser Gly Val Pro Ala 50 55 60Arg
Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Asn Ile His65 70 75
80Pro Val Glu Glu Glu Asp Ala Ala Thr Tyr Tyr Cys Gln His Ser Arg
85 90 95Glu Leu Pro Phe Thr Phe Gly Ser Gly Thr Lys Leu Glu Ile Lys
100 105 11065121PRTArtificial SequenceVH anti-CD138 65Gln Val Gln
Leu Gln Gln Ser Gly Ser Glu Leu Met Pro Gly Ala Ser1 5 10 15Val Lys
Ile Ser Cys Lys Ala Thr Gly Tyr Thr Phe Ser Asn Tyr Trp 20 25 30Ile
Glu Trp Val Lys Gln Arg Pro Gly His Gly Leu Glu Trp Ile Gly 35 40
45Glu Ile Leu Pro Gly Thr Gly Arg Thr Ile Tyr Asn Glu Lys Phe Lys
50 55 60Gly Lys Ala Thr Phe Thr Ala Asp Ile Ser Ser Asn Thr Val Gln
Met65 70 75 80Gln Leu Ser Ser Leu Thr Ser Glu Asp Ser Ala Val Tyr
Tyr Cys Ala 85 90 95Arg Glu Gln Tyr Tyr Gly Asn Phe Tyr Tyr Ala Met
Asp Tyr Trp Gly 100 105 110Gln Gly Thr Ser Val Thr Val Ser Ser 115
12066110PRTArtificial SequenceVL anti-CD138 66Asp Ile Gln Met Thr
Gln Ser Thr Ser Ser Leu Ser Ala Ser Leu Gly1 5 10 15Asp Arg Val Thr
Ile Ser Cys Ser Ala Ser Gln Gly Ile Asn Asn Tyr 20 25 30Leu Asn Trp
Tyr Gln Gln Lys Pro Asp Gly Thr Val Glu Leu Leu Ile 35 40 45Tyr Tyr
Thr Ser Thr Leu Gln Ser Gly Val Pro Ser Arg Phe Ser Gly 50 55 60Ser
Gly Ser Gly Thr Asp Tyr Ser Leu Thr Ile Ser Asn Leu Glu Pro65 70 75
80Glu Asp Ile Gly Thr Tyr Tyr Cys Gln Gln Tyr Ser Lys Leu Pro Arg
85 90 95Thr Phe Gly Gly Gly Thr Lys Leu Glu Ile Lys Arg Thr Val 100
105 11067246PRTArtificial SequenceAnti-HLA-A2 scFv 67Gln Val Gln
Leu Val Gln Ser Gly Gly Gly Val Val Gln Pro Gly Gly1 5 10 15Ser Leu
Arg Val Ser Cys Ala Ala Ser Gly Val Thr Leu Ser Asp Tyr 20 25 30Gly
Met His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Met 35 40
45Ala Phe Ile Arg Asn Asp Gly Ser Asp Lys Tyr Tyr Ala Asp Ser Val
50 55 60Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Lys Thr Val
Ser65 70 75 80Leu Gln Met Ser Ser Leu Arg Ala Glu Asp Thr Ala Val
Tyr Tyr Cys 85 90 95Ala Lys Asn Gly Glu Ser Gly Pro Leu Asp Tyr Trp
Tyr Phe Asp Leu 100 105 110Trp Gly Arg Gly Thr Leu Val Thr Val Ser
Ser Gly Gly Gly Gly Ser 115 120 125Gly Gly Gly Gly Ser Gly Gly Gly
Gly Ser Asp Val Val Met Thr Gln 130 135 140Ser Pro Ser Ser Leu Ser
Ala Ser Val Gly Asp Arg Val Thr Ile Thr145 150 155 160Cys Gln Ala
Ser Gln Asp Ile Ser Asn Tyr Leu Asn Trp Tyr Gln Gln 165 170 175Lys
Pro Gly Lys Ala Pro Lys Leu Leu Ile Tyr Asp Ala Ser Asn Leu 180 185
190Glu Thr Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp
195 200 205Phe Thr Phe Thr Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala
Thr Tyr 210 215 220Tyr Cys Gln Gln Tyr Ser Ser Phe Pro Leu Thr Phe
Gly Gly Gly Thr225 230 235 240Lys Val Asp Ile Lys Arg
24568245PRTArtificial SequenceAnti-HLA-Cw6 scFv 68Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly1 5 10 15Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30Ala Met
Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45Ser
Ala Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr65
70 75 80Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95Ala Arg Tyr Ser Phe Ser Trp Phe Asp Val Trp Gly Gln Gly
Thr Leu 100 105 110Val Thr Val Ser Ser Ala Gly Gly Gly Ser Gly Gly
Gly Gly Ser Gly 115 120 125Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp
Ile Glu Leu Thr Gln Pro 130 135 140Pro Ser Val Ser Val Ala Pro Gly
Gln Thr Ala Arg Ile Ser Cys Ser145 150 155 160Gly Asp Ala Leu Gly
Asp Lys Tyr Ala Ser Trp Tyr Gln Gln Lys Pro 165 170 175Gly Gln Ala
Pro Val Leu Val Ile Tyr Asp Asp Ser Asp Arg Pro Ser 180 185 190Gly
Ile Pro Glu Arg Phe Ser Gly Ser Asn Ser Gly Asn Thr Ala Thr 195 200
205Leu Thr Ile Ser Gly Thr Gln Ala Glu Asp Glu Ala Asp Tyr Tyr Cys
210 215 220Gln Ser Tyr Asp Asn Phe Asp Ser Pro Val Phe Gly Gly Gly
Thr Lys225 230 235 240Leu Thr Val Leu Gly 24569248PRTArtificial
SequenceAnti-EpCAM scFv 69Glu Val Gln Leu Leu Glu Gln Ser Gly Ala
Glu Leu Val Arg Pro Gly1 5 10 15Thr Ser Val Lys Ile Ser Cys Lys Ala
Ser Gly Tyr Ala Phe Thr Asn 20 25 30Tyr Trp Leu Gly Trp Val Lys Gln
Arg Pro Gly His Gly Leu Glu Trp 35 40 45Ile Gly Asp Ile Phe Pro Gly
Ser Gly Asn Ile His Tyr Asn Glu Lys 50 55 60Phe Lys Gly Lys Ala Thr
Leu Thr Ala Asp Lys Ser Ser Ser Thr Ala65 70 75 80Tyr Met Gln Leu
Ser Ser Leu Thr Phe Glu Asp Ser Ala Val Tyr Phe 85 90 95Cys Ala Arg
Leu Arg Asn Trp Asp Glu Pro Met Asp Tyr Trp Gly Gln 100 105 110Gly
Thr Thr Val Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly 115 120
125Gly Ser Gly Gly Gly Gly Ser Glu Leu Val Met Thr Gln Ser Pro Ser
130 135 140Ser Leu Thr Val Thr Ala Gly Glu Lys Val Thr Met Ser Cys
Lys Ser145 150 155 160Ser Gln Ser Leu Leu Asn Ser Gly Asn Gln Lys
Asn Tyr Leu Thr Trp 165 170 175Tyr Gln Gln Lys Pro Gly Gln Pro Pro
Lys Leu Leu Ile Tyr Trp Ala 180 185 190Ser Thr Arg Glu Ser Gly Val
Pro Asp Arg Phe Thr Gly Ser Gly Ser 195 200 205Gly Thr Asp Phe Thr
Leu Thr Ile Ser Ser Val Gln Ala Glu Asp Leu 210 215 220Ala Val Tyr
Tyr Cys Gln Asn Asp Tyr Ser Tyr Pro
Leu Thr Phe Gly225 230 235 240Ala Gly Thr Lys Leu Glu Ile Lys
24570242PRTArtificial SequenceAnti-HER2 scFv 70Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly1 5 10 15Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Asn Ile Lys Asp Thr 20 25 30Tyr Ile His
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45Ala Arg
Ile Tyr Pro Thr Asn Gly Tyr Thr Arg Tyr Ala Asp Ser Val 50 55 60Lys
Gly Arg Phe Thr Ile Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr65 70 75
80Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys
85 90 95Ser Arg Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp Tyr Trp Gly
Gln 100 105 110Gly Thr Leu Val Thr Val Ser Ser Gly Gly Gly Gly Ser
Gly Gly Gly 115 120 125Gly Ser Gly Gly Gly Gly Ser Asp Ile Gln Met
Thr Gln Ser Pro Ser 130 135 140Ser Leu Ser Ala Ser Val Gly Asp Arg
Val Thr Ile Thr Cys Arg Ala145 150 155 160Ser Gln Asp Val Asn Thr
Ala Val Ala Trp Tyr Gln Gln Lys Pro Gly 165 170 175Lys Ala Pro Lys
Leu Leu Ile Tyr Ser Ala Ser Phe Leu Tyr Ser Gly 180 185 190Val Pro
Ser Arg Phe Ser Gly Ser Arg Ser Gly Thr Asp Phe Thr Leu 195 200
205Thr Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln
210 215 220Gln His Tyr Thr Thr Pro Pro Thr Phe Gly Gln Gly Thr Lys
Val Glu225 230 235 240Ile Lys71241PRTArtificial
SequenceAnti-EGFR(1) scFv 71Gln Val Gln Leu Gln Glu Ser Gly Pro Gly
Leu Val Lys Pro Ser Glu1 5 10 15Thr Leu Ser Leu Thr Cys Thr Val Ser
Gly Gly Ser Val Ser Ser Gly 20 25 30Asp Tyr Tyr Trp Thr Trp Ile Arg
Gln Ser Pro Gly Lys Gly Leu Glu 35 40 45Trp Ile Gly His Ile Tyr Tyr
Ser Gly Asn Thr Asn Tyr Asn Pro Ser 50 55 60Leu Lys Ser Arg Leu Thr
Ile Ser Ile Asp Thr Ser Lys Thr Gln Phe65 70 75 80Ser Leu Lys Leu
Ser Ser Val Thr Ala Ala Asp Thr Ala Ile Tyr Tyr 85 90 95Cys Val Arg
Asp Arg Val Thr Gly Ala Phe Asp Ile Trp Gly Gln Gly 100 105 110Thr
Met Val Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly 115 120
125Ser Gly Gly Gly Gly Ser Asp Ile Gln Met Thr Gln Ser Pro Ser Ser
130 135 140Leu Ser Ala Ser Val Gly Asp Arg Val Thr Ile Thr Cys Gln
Ala Ser145 150 155 160Gln Asp Ile Ser Asn Tyr Leu Asn Trp Tyr Gln
Gln Lys Pro Gly Lys 165 170 175Ala Pro Lys Leu Leu Ile Tyr Asp Ala
Ser Asn Leu Glu Thr Gly Val 180 185 190Pro Ser Arg Phe Ser Gly Ser
Gly Ser Gly Thr Asp Phe Thr Phe Thr 195 200 205Ile Ser Ser Leu Gln
Pro Glu Asp Ile Ala Thr Tyr Phe Cys Gln His 210 215 220Phe Asp His
Leu Pro Leu Ala Phe Gly Gly Gly Thr Lys Val Glu Ile225 230 235
240Lys72252PRTArtificial SequenceAnti-CEA scFv 72Ser Arg Val Ala
Gln Val Gln Leu Gln Gln Ser Gly Ala Glu Leu Ala1 5 10 15Arg Pro Gly
Ala Ser Val Lys Met Ser Cys Lys Ala Ser Gly Tyr Thr 20 25 30Phe Thr
Thr Tyr Thr Ile His Trp Val Arg Gln Arg Pro Gly His Asp 35 40 45Leu
Glu Trp Ile Gly Tyr Ile Asn Pro Ser Ser Gly Tyr Ser Asp Tyr 50 55
60Asn Gln Asn Phe Lys Gly Lys Thr Thr Leu Thr Ala Asp Lys Ser Ser65
70 75 80Asn Thr Ala Tyr Met Gln Leu Asn Ser Leu Thr Ser Glu Asp Ser
Ala 85 90 95Val Tyr Tyr Cys Ala Arg Arg Ala Asp Tyr Gly Asn Tyr Glu
Tyr Thr 100 105 110Trp Phe Ala Tyr Trp Gly Gln Gly Thr Thr Val Thr
Val Ser Ser Gly 115 120 125Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly
Gly Gly Gly Ser Asp Ile 130 135 140Glu Leu Thr Gln Ser Pro Lys Phe
Met Ser Thr Ser Val Gly Asp Arg145 150 155 160Val Asn Val Thr Tyr
Lys Ala Ser Gln Asn Val Gly Thr Asn Val Ala 165 170 175Trp Phe Gln
Gln Lys Pro Gly Gln Ser Pro Lys Val Leu Ile Tyr Ser 180 185 190Ala
Ser Tyr Arg Tyr Ser Gly Val Pro Asp Arg Phe Thr Gly Ser Gly 195 200
205Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Asn Val Gln Ser Glu Asp
210 215 220Leu Ala Glu Tyr Phe Cys Gln Gln Tyr His Thr Tyr Pro Leu
Thr Phe225 230 235 240Gly Gly Gly Thr Lys Leu Glu Ile Lys Arg Ala
Asp 245 25073250PRTArtificial SequenceAnti-CD45 scFv 73Asp Ile Val
Leu Thr Gln Ser Pro Ala Ser Leu Ala Val Ser Leu Gly1 5 10 15Gln Arg
Ala Thr Ile Ser Cys Arg Ala Ser Lys Ser Val Ser Thr Ser 20 25 30Gly
Tyr Ser Tyr Leu His Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro 35 40
45Lys Leu Leu Ile Tyr Leu Ala Ser Asn Leu Glu Ser Gly Val Pro Ala
50 55 60Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Asn Ile
His65 70 75 80Pro Val Glu Glu Glu Asp Ala Ala Thr Tyr Tyr Cys Gln
His Ser Arg 85 90 95Glu Leu Pro Phe Thr Phe Gly Ser Gly Thr Lys Leu
Glu Ile Lys Lys 100 105 110Ile Ser Gly Gly Gly Gly Ser Gly Gly Gly
Gly Ser Gly Gly Gly Gly 115 120 125Ser Ser Gln Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro 130 135 140Gly Gly Ser Leu Lys Leu
Ser Cys Ala Ala Ser Gly Phe Asp Phe Ser145 150 155 160Arg Tyr Trp
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu 165 170 175Trp
Ile Gly Glu Ile Asn Pro Thr Ser Ser Thr Ile Asn Phe Thr Pro 180 185
190Ser Leu Lys Asp Lys Val Phe Ile Ser Arg Asp Asn Ala Lys Asn Thr
195 200 205Leu Tyr Leu Gln Met Ser Lys Val Arg Ser Glu Asp Thr Ala
Leu Tyr 210 215 220Tyr Cys Ala Arg Gly Asn Tyr Tyr Arg Tyr Gly Asp
Ala Met Asp Tyr225 230 235 240Trp Gly Gln Gly Thr Ser Val Thr Val
Ser 245 25074246PRTArtificial SequenceAnti-CD138 scFv 74Gln Val Gln
Leu Gln Gln Ser Gly Ser Glu Leu Met Pro Gly Ala Ser1 5 10 15Val Lys
Ile Ser Cys Lys Ala Thr Gly Tyr Thr Phe Ser Asn Tyr Trp 20 25 30Ile
Glu Trp Val Lys Gln Arg Pro Gly His Gly Leu Glu Trp Ile Gly 35 40
45Glu Ile Leu Pro Gly Thr Gly Arg Thr Ile Tyr Asn Glu Lys Phe Lys
50 55 60Gly Lys Ala Thr Phe Thr Ala Asp Ile Ser Ser Asn Thr Val Gln
Met65 70 75 80Gln Leu Ser Ser Leu Thr Ser Glu Asp Ser Ala Val Tyr
Tyr Cys Ala 85 90 95Arg Glu Gln Tyr Tyr Gly Asn Phe Tyr Tyr Ala Met
Asp Tyr Trp Gly 100 105 110Gln Gly Thr Ser Val Thr Val Ser Ser Gly
Gly Gly Gly Ser Gly Gly 115 120 125Gly Gly Ser Gly Gly Gly Gly Ser
Asp Ile Gln Met Thr Gln Ser Thr 130 135 140Ser Ser Leu Ser Ala Ser
Leu Gly Asp Arg Val Thr Ile Ser Cys Ser145 150 155 160Ala Ser Gln
Gly Ile Asn Asn Tyr Leu Asn Trp Tyr Gln Gln Lys Pro 165 170 175Asp
Gly Thr Val Glu Leu Leu Ile Tyr Tyr Thr Ser Thr Leu Gln Ser 180 185
190Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Tyr Ser
195 200 205Leu Thr Ile Ser Asn Leu Glu Pro Glu Asp Ile Gly Thr Tyr
Tyr Cys 210 215 220Gln Gln Tyr Ser Lys Leu Pro Arg Thr Phe Gly Gly
Gly Thr Lys Leu225 230 235 240Glu Ile Lys Arg Thr Val
245758PRTArtificial SequenceAnti-HLA-A2 VH CDR1 75Gly Val Thr Leu
Ser Asp Tyr Gly1 5768PRTArtificial SequenceAnti-HLA-A2 VH CDR2
76Ile Arg Asn Asp Gly Ser Asp Lys1 57716PRTArtificial
SequenceAnti-HLA-A2 VH CDR3 77Ala Lys Asn Gly Glu Ser Gly Pro Leu
Asp Tyr Trp Tyr Phe Asp Leu1 5 10 15786PRTArtificial
SequenceAnti-HLA-A2 VL CDR1 78Gln Asp Ile Ser Asn Tyr1
5799PRTArtificial SequenceAnti-HLA-A2 VL CDR3 79Gln Gln Tyr Ser Ser
Phe Pro Leu Thr1 5808PRTArtificial SequenceAnti-HLA-Cw6 VH CDR1
80Gly Phe Thr Phe Ser Ser Tyr Ala1 5818PRTArtificial
SequenceAnti-HLA-Cw6 VH CDR2 81Ile Ser Gly Ser Gly Gly Ser Thr1
58210PRTArtificial SequenceAnti-HLA-Cw6 VH CDR3 82Ala Arg Tyr Ser
Phe Ser Trp Phe Asp Val1 5 10836PRTArtificial SequenceAnti-HLA-Cw6
VL CDR1 83Ala Leu Gly Asp Lys Tyr1 58410PRTArtificial
SequenceAnti-HLA-Cw6 VL CDR3 84Gln Ser Tyr Asp Asn Phe Asp Ser Pro
Val1 5 10858PRTArtificial SequenceAnti-EpCAM CDR1 VH 85Gly Tyr Ala
Phe Thr Asn Tyr Trp1 5868PRTArtificial SequenceAnti-EpCAM CDR2 VH
86Ile Phe Pro Gly Ser Gly Asn Ile1 58712PRTArtificial
SequenceAnti-EpCAM CDR3 VH 87Ala Arg Leu Arg Asn Trp Asp Glu Pro
Met Asp Tyr1 5 108812PRTArtificial SequenceAnti-EpCAM CDR1 VL 88Gln
Ser Leu Leu Asn Ser Gly Asn Gln Lys Asn Tyr1 5 10899PRTArtificial
SequenceAnti-EpCAM CDR3 VL 89Gln Asn Asp Tyr Ser Tyr Pro Leu Thr1
5908PRTArtificial SequenceAnti-HER2 VH CDR1 90Gly Phe Asn Ile Lys
Asp Thr Tyr1 5918PRTArtificial SequenceAnti-HER2 VH CDR2 91Ile Tyr
Pro Thr Asn Gly Tyr Thr1 59213PRTArtificial SequenceAnti-HER2 VH
CDR3 92Ser Arg Trp Gly Gly Asp Gly Phe Tyr Ala Met Asp Tyr1 5
10936PRTArtificial SequenceAnti-HER2 VL CDR1 93Gln Asp Val Asn Thr
Ala1 5949PRTArtificial SequenceAnti-HER2 VL CDR3 94Gln Gln His Tyr
Thr Thr Pro Pro Thr1 59510PRTArtificial SequenceAnti-EGFR-1 VH CDR1
95Gly Gly Ser Val Ser Ser Gly Asp Tyr Tyr1 5 10967PRTArtificial
SequenceAnti-EGFR-1 VH CDR2 96Ile Tyr Tyr Ser Gly Asn Thr1
59711PRTArtificial SequenceAnti-EGFR-1 VH CDR3 97Val Arg Asp Arg
Val Thr Gly Ala Phe Asp Ile1 5 10986PRTArtificial
SequenceAnti-EGFR-1 VL CDR1 98Gln Asp Ile Ser Asn Tyr1
5999PRTArtificial SequenceAnti-EGFR-1 VL CDR3 99Gln His Phe Asp His
Leu Pro Leu Ala1 51008PRTArtificial SequenceAnti-CEA VH CDR1 100Gly
Tyr Thr Phe Thr Thr Tyr Thr1 51018PRTArtificial SequenceAnti-CEA VH
CDR2 101Ile Asn Pro Ser Ser Gly Tyr Ser1 510216PRTArtificial
SequenceAnti-CEA VH CDR3 102Ala Arg Arg Ala Asp Tyr Gly Asn Tyr Glu
Tyr Thr Trp Phe Ala Tyr1 5 10 151036PRTArtificial SequenceAnti-CEA
VL CDR1 103Gln Asn Val Gly Thr Asn1 51049PRTArtificial
SequenceAnti-CEA VL CDR3 104Gln Gln Tyr His Thr Tyr Pro Leu Thr1
51055PRTArtificial SequenceAnti-CD45 VH CDR1 105Gly Phe Asp Phe
Ser1 51069PRTArtificial SequenceAnti-CD45 VH CDR2 106Glu Ile Asn
Pro Thr Ser Ser Thr Ile1 510710PRTArtificial SequenceAnti-CD45 VL
CDR1 107Lys Ser Val Ser Thr Ser Gly Tyr Ser Tyr1 5
101089PRTArtificial SequenceAnti-CD45 VL CDR3 108Gln His Ser Arg
Glu Leu Pro Phe Thr1 51098PRTArtificial SequenceAnti-CD138 VH CDR1
109Gly Tyr Thr Phe Ser Asn Tyr Trp1 51108PRTArtificial
SequenceAnti-CD138 VH CDR2 110Ile Leu Pro Gly Thr Gly Arg Thr1
511115PRTArtificial SequenceAnti-CD138 VH CDR3 111Ala Arg Glu Gln
Tyr Tyr Gly Asn Phe Tyr Tyr Ala Met Asp Tyr1 5 10
151126PRTArtificial SequenceAnti-CD138 VL CDR1 112Gln Gly Ile Asn
Asn Tyr1 51139PRTArtificial SequenceAnti-CD138 VL CDR3 113Gln Gln
Tyr Ser Lys Leu Pro Arg Thr1 5114388PRTArtificial
SequencepelB-CD3VL-scFvEPCAM(VH-VL)-6His 114Met Lys Tyr Leu Leu Pro
Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro Ala Met
Ala Asp Ile Gln Leu Thr Gln Ser Pro Ala Ile 20 25 30Met Ser Ala Ser
Pro Gly Glu Lys Val Thr Met Thr Cys Arg Ala Ser 35 40 45Ser Ser Val
Ser Tyr Met Asn Trp Tyr Gln Gln Lys Ser Gly Thr Ser 50 55 60Pro Lys
Arg Trp Ile Tyr Asp Thr Ser Lys Val Ala Ser Gly Val Pro65 70 75
80Tyr Arg Phe Ser Gly Ser Gly Ser Gly Thr Ser Tyr Ser Leu Thr Ile
85 90 95Ser Ser Met Glu Ala Glu Asp Ala Ala Thr Tyr Tyr Cys Gln Gln
Trp 100 105 110Ser Ser Asn Pro Leu Thr Phe Gly Ala Gly Thr Lys Leu
Glu Leu Lys 115 120 125Ser Gly Gly Gly Gly Ser Glu Val Gln Leu Leu
Glu Gln Ser Gly Ala 130 135 140Glu Leu Val Arg Pro Gly Thr Ser Val
Lys Ile Ser Cys Lys Ala Ser145 150 155 160Gly Tyr Ala Phe Thr Asn
Tyr Trp Leu Gly Trp Val Lys Gln Arg Pro 165 170 175Gly His Gly Leu
Glu Trp Ile Gly Asp Ile Phe Pro Gly Ser Gly Asn 180 185 190Ile His
Tyr Asn Glu Lys Phe Lys Gly Lys Ala Thr Leu Thr Ala Asp 195 200
205Lys Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser Ser Leu Thr Phe Glu
210 215 220Asp Ser Ala Val Tyr Phe Cys Ala Arg Leu Arg Asn Trp Asp
Glu Pro225 230 235 240Met Asp Tyr Trp Gly Gln Gly Thr Thr Val Thr
Val Ser Ser Gly Gly 245 250 255Gly Gly Ser Gly Gly Gly Gly Ser Gly
Gly Gly Gly Ser Glu Leu Val 260 265 270Met Thr Gln Ser Pro Ser Ser
Leu Thr Val Thr Ala Gly Glu Lys Val 275 280 285Thr Met Ser Cys Lys
Ser Ser Gln Ser Leu Leu Asn Ser Gly Asn Gln 290 295 300Lys Asn Tyr
Leu Thr Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro Lys305 310 315
320Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val Pro Asp Arg
325 330 335Phe Thr Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile
Ser Ser 340 345 350Val Gln Ala Glu Asp Leu Ala Val Tyr Tyr Cys Gln
Asn Asp Tyr Ser 355 360 365Tyr Pro Leu Thr Phe Gly Ala Gly Thr Lys
Leu Glu Ile Lys His His 370 375 380His His His
His385115404PRTArtificial SequencepelB-CD3VH-scFvHer2-6HIS 115Met
Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10
15Ala Gln Pro Ala Met Ala Asp Ile Lys Leu Gln Gln Ser Gly Ala Glu
20 25 30Leu Ala Arg Pro Gly Ala Ser Val Lys Met Ser Cys Lys Thr Ser
Gly 35 40 45Tyr Thr Phe Thr Arg Tyr Thr Met His Trp Val Lys Gln Arg
Pro Gly 50 55 60Gln Gly Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser Arg
Gly Tyr Thr65 70 75 80Asn Tyr Asn Gln Lys Phe Lys Asp Lys Ala Thr
Leu Thr Thr Asp Lys 85 90 95Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser
Ser Leu Thr Ser Glu Asp 100 105 110Ser Ala Val Tyr Tyr Cys Ala Arg
Tyr Tyr Asp Asp His Tyr Cys Leu 115 120 125Asp Tyr Trp Gly Gln Gly
Thr Thr Leu Thr Val Ser Ser Gly Gly Gly 130 135 140Gly Ser Gly Gly
Gly Gly Ser Gly Gly Gly Gly Ser Glu Val Gln Leu145 150 155 160Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly Ser Leu Arg Leu 165 170
175Ser Cys Ala Ala Ser Gly Phe Asn Ile Lys Asp Thr Tyr Ile His Trp
180 185 190Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val Ala Arg
Ile Tyr 195 200 205Pro Thr Asn Gly Tyr Thr Arg Tyr Ala Asp Ser Val
Lys Gly Arg Phe 210
215 220Thr Ile Ser Ala Asp Thr Ser Lys Asn Thr Ala Tyr Leu Gln Met
Asn225 230 235 240Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys
Ser Arg Trp Gly 245 250 255Gly Asp Gly Phe Tyr Ala Met Asp Tyr Trp
Gly Gln Gly Thr Leu Val 260 265 270Thr Val Ser Ser Gly Gly Gly Gly
Ser Gly Gly Gly Gly Ser Gly Gly 275 280 285Gly Gly Ser Asp Ile Gln
Met Thr Gln Ser Pro Ser Ser Leu Ser Ala 290 295 300Ser Val Gly Asp
Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Asp Val305 310 315 320Asn
Thr Ala Val Ala Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys 325 330
335Leu Leu Ile Tyr Ser Ala Ser Phe Leu Tyr Ser Gly Val Pro Ser Arg
340 345 350Phe Ser Gly Ser Arg Ser Gly Thr Asp Phe Thr Leu Thr Ile
Ser Ser 355 360 365Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln
Gln His Tyr Thr 370 375 380Thr Pro Pro Thr Phe Gly Gln Gly Thr Lys
Val Glu Ile Lys His His385 390 395 400His His His
His116403PRTArtificial SequencepelB-CD3VH-scFvEGFR(1)-6HIS 116Met
Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10
15Ala Gln Pro Ala Met Ala Asp Ile Lys Leu Gln Gln Ser Gly Ala Glu
20 25 30Leu Ala Arg Pro Gly Ala Ser Val Lys Met Ser Cys Lys Thr Ser
Gly 35 40 45Tyr Thr Phe Thr Arg Tyr Thr Met His Trp Val Lys Gln Arg
Pro Gly 50 55 60Gln Gly Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser Arg
Gly Tyr Thr65 70 75 80Asn Tyr Asn Gln Lys Phe Lys Asp Lys Ala Thr
Leu Thr Thr Asp Lys 85 90 95Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser
Ser Leu Thr Ser Glu Asp 100 105 110Ser Ala Val Tyr Tyr Cys Ala Arg
Tyr Tyr Asp Asp His Tyr Cys Leu 115 120 125Asp Tyr Trp Gly Gln Gly
Thr Thr Leu Thr Val Ser Ser Gly Gly Gly 130 135 140Gly Ser Gly Gly
Gly Gly Ser Gly Gly Gly Gly Ser Gln Val Gln Leu145 150 155 160Gln
Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Glu Thr Leu Ser Leu 165 170
175Thr Cys Thr Val Ser Gly Gly Ser Val Ser Ser Gly Asp Tyr Tyr Trp
180 185 190Thr Trp Ile Arg Gln Ser Pro Gly Lys Gly Leu Glu Trp Ile
Gly His 195 200 205Ile Tyr Tyr Ser Gly Asn Thr Asn Tyr Asn Pro Ser
Leu Lys Ser Arg 210 215 220Leu Thr Ile Ser Ile Asp Thr Ser Lys Thr
Gln Phe Ser Leu Lys Leu225 230 235 240Ser Ser Val Thr Ala Ala Asp
Thr Ala Ile Tyr Tyr Cys Val Arg Asp 245 250 255Arg Val Thr Gly Ala
Phe Asp Ile Trp Gly Gln Gly Thr Met Val Thr 260 265 270Val Ser Ser
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly 275 280 285Gly
Ser Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser 290 295
300Val Gly Asp Arg Val Thr Ile Thr Cys Gln Ala Ser Gln Asp Ile
Ser305 310 315 320Asn Tyr Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys
Ala Pro Lys Leu 325 330 335Leu Ile Tyr Asp Ala Ser Asn Leu Glu Thr
Gly Val Pro Ser Arg Phe 340 345 350Ser Gly Ser Gly Ser Gly Thr Asp
Phe Thr Phe Thr Ile Ser Ser Leu 355 360 365Gln Pro Glu Asp Ile Ala
Thr Tyr Phe Cys Gln His Phe Asp His Leu 370 375 380Pro Leu Ala Phe
Gly Gly Gly Thr Lys Val Glu Ile Lys His His His385 390 395 400His
His His117414PRTArtificial SequencepelB-CD3VH-scFvCEA-6HIS 117Met
Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10
15Ala Gln Pro Ala Met Ala Asp Ile Lys Leu Gln Gln Ser Gly Ala Glu
20 25 30Leu Ala Arg Pro Gly Ala Ser Val Lys Met Ser Cys Lys Thr Ser
Gly 35 40 45Tyr Thr Phe Thr Arg Tyr Thr Met His Trp Val Lys Gln Arg
Pro Gly 50 55 60Gln Gly Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser Arg
Gly Tyr Thr65 70 75 80Asn Tyr Asn Gln Lys Phe Lys Asp Lys Ala Thr
Leu Thr Thr Asp Lys 85 90 95Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser
Ser Leu Thr Ser Glu Asp 100 105 110Ser Ala Val Tyr Tyr Cys Ala Arg
Tyr Tyr Asp Asp His Tyr Cys Leu 115 120 125Asp Tyr Trp Gly Gln Gly
Thr Thr Leu Thr Val Ser Ser Gly Gly Gly 130 135 140Gly Ser Gly Gly
Gly Gly Ser Gly Gly Gly Gly Ser Ser Arg Val Ala145 150 155 160Gln
Val Gln Leu Gln Gln Ser Gly Ala Glu Leu Ala Arg Pro Gly Ala 165 170
175Ser Val Lys Met Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr Thr Tyr
180 185 190Thr Ile His Trp Val Arg Gln Arg Pro Gly His Asp Leu Glu
Trp Ile 195 200 205Gly Tyr Ile Asn Pro Ser Ser Gly Tyr Ser Asp Tyr
Asn Gln Asn Phe 210 215 220Lys Gly Lys Thr Thr Leu Thr Ala Asp Lys
Ser Ser Asn Thr Ala Tyr225 230 235 240Met Gln Leu Asn Ser Leu Thr
Ser Glu Asp Ser Ala Val Tyr Tyr Cys 245 250 255Ala Arg Arg Ala Asp
Tyr Gly Asn Tyr Glu Tyr Thr Trp Phe Ala Tyr 260 265 270Trp Gly Gln
Gly Thr Thr Val Thr Val Ser Ser Gly Gly Gly Gly Ser 275 280 285Gly
Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp Ile Glu Leu Thr Gln 290 295
300Ser Pro Lys Phe Met Ser Thr Ser Val Gly Asp Arg Val Asn Val
Thr305 310 315 320Tyr Lys Ala Ser Gln Asn Val Gly Thr Asn Val Ala
Trp Phe Gln Gln 325 330 335Lys Pro Gly Gln Ser Pro Lys Val Leu Ile
Tyr Ser Ala Ser Tyr Arg 340 345 350Tyr Ser Gly Val Pro Asp Arg Phe
Thr Gly Ser Gly Ser Gly Thr Asp 355 360 365Phe Thr Leu Thr Ile Ser
Asn Val Gln Ser Glu Asp Leu Ala Glu Tyr 370 375 380Phe Cys Gln Gln
Tyr His Thr Tyr Pro Leu Thr Phe Gly Gly Gly Thr385 390 395 400Lys
Leu Glu Ile Lys Arg Ala Asp His His His His His His 405
410118392PRTArtificial SequencepelB-CD3VL-scFvCEA-6HIS 118Met Lys
Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala
Gln Pro Ala Met Ala Asp Ile Gln Leu Thr Gln Ser Pro Ala Ile 20 25
30Met Ser Ala Ser Pro Gly Glu Lys Val Thr Met Thr Cys Arg Ala Ser
35 40 45Ser Ser Val Ser Tyr Met Asn Trp Tyr Gln Gln Lys Ser Gly Thr
Ser 50 55 60Pro Lys Arg Trp Ile Tyr Asp Thr Ser Lys Val Ala Ser Gly
Val Pro65 70 75 80Tyr Arg Phe Ser Gly Ser Gly Ser Gly Thr Ser Tyr
Ser Leu Thr Ile 85 90 95Ser Ser Met Glu Ala Glu Asp Ala Ala Thr Tyr
Tyr Cys Gln Gln Trp 100 105 110Ser Ser Asn Pro Leu Thr Phe Gly Ala
Gly Thr Lys Leu Glu Leu Lys 115 120 125Ser Gly Gly Gly Gly Ser Ser
Arg Val Ala Gln Val Gln Leu Gln Gln 130 135 140Ser Gly Ala Glu Leu
Ala Arg Pro Gly Ala Ser Val Lys Met Ser Cys145 150 155 160Lys Ala
Ser Gly Tyr Thr Phe Thr Thr Tyr Thr Ile His Trp Val Arg 165 170
175Gln Arg Pro Gly His Asp Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser
180 185 190Ser Gly Tyr Ser Asp Tyr Asn Gln Asn Phe Lys Gly Lys Thr
Thr Leu 195 200 205Thr Ala Asp Lys Ser Ser Asn Thr Ala Tyr Met Gln
Leu Asn Ser Leu 210 215 220Thr Ser Glu Asp Ser Ala Val Tyr Tyr Cys
Ala Arg Arg Ala Asp Tyr225 230 235 240Gly Asn Tyr Glu Tyr Thr Trp
Phe Ala Tyr Trp Gly Gln Gly Thr Thr 245 250 255Val Thr Val Ser Ser
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly 260 265 270Gly Gly Gly
Ser Asp Ile Glu Leu Thr Gln Ser Pro Lys Phe Met Ser 275 280 285Thr
Ser Val Gly Asp Arg Val Asn Val Thr Tyr Lys Ala Ser Gln Asn 290 295
300Val Gly Thr Asn Val Ala Trp Phe Gln Gln Lys Pro Gly Gln Ser
Pro305 310 315 320Lys Val Leu Ile Tyr Ser Ala Ser Tyr Arg Tyr Ser
Gly Val Pro Asp 325 330 335Arg Phe Thr Gly Ser Gly Ser Gly Thr Asp
Phe Thr Leu Thr Ile Ser 340 345 350Asn Val Gln Ser Glu Asp Leu Ala
Glu Tyr Phe Cys Gln Gln Tyr His 355 360 365Thr Tyr Pro Leu Thr Phe
Gly Gly Gly Thr Lys Leu Glu Ile Lys Arg 370 375 380Ala Asp His His
His His His His385 390119414PRTArtificial
SequencepelB-(aCD3)VH-scFvHLA-Cw6-myc-6His 119Met Lys Tyr Leu Leu
Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro Ala
Met Ala Asp Ile Lys Leu Gln Gln Ser Gly Ala Glu 20 25 30Leu Ala Arg
Pro Gly Ala Ser Val Lys Met Ser Cys Lys Thr Ser Gly 35 40 45Tyr Thr
Phe Thr Arg Tyr Thr Met His Trp Val Lys Gln Arg Pro Gly 50 55 60Gln
Gly Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser Arg Gly Tyr Thr65 70 75
80Asn Tyr Asn Gln Lys Phe Lys Asp Lys Ala Thr Leu Thr Thr Asp Lys
85 90 95Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser Ser Leu Thr Ser Glu
Asp 100 105 110Ser Ala Val Tyr Tyr Cys Ala Arg Tyr Tyr Asp Asp His
Tyr Cys Leu 115 120 125Asp Tyr Trp Gly Gln Gly Thr Thr Leu Thr Val
Ser Ser Gly Gly Gly 130 135 140Gly Ser Gly Gly Gly Gly Ser Gly Gly
Glu Val Gln Leu Val Glu Ser145 150 155 160Gly Gly Gly Leu Val Gln
Pro Gly Gly Ser Leu Arg Leu Ser Cys Ala 165 170 175Ala Ser Gly Phe
Thr Phe Ser Ser Tyr Ala Met Ser Trp Val Arg Gln 180 185 190Ala Pro
Gly Lys Gly Leu Glu Trp Val Ser Ala Ile Ser Gly Ser Gly 195 200
205Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys Gly Arg Phe Thr Ile Ser
210 215 220Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu Gln Met Asn Ser
Leu Arg225 230 235 240Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala Arg
Tyr Ser Phe Ser Trp 245 250 255Phe Asp Val Trp Gly Gln Gly Thr Leu
Val Thr Val Ser Ser Ala Gly 260 265 270Gly Gly Ser Gly Gly Gly Gly
Ser Gly Gly Gly Gly Ser Gly Gly Gly 275 280 285Gly Ser Asp Ile Glu
Leu Thr Gln Pro Pro Ser Val Ser Val Ala Pro 290 295 300Gly Gln Thr
Ala Arg Ile Ser Cys Ser Gly Asp Ala Leu Gly Asp Lys305 310 315
320Tyr Ala Ser Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Val Leu Val
325 330 335Ile Tyr Asp Asp Ser Asp Arg Pro Ser Gly Ile Pro Glu Arg
Phe Ser 340 345 350Gly Ser Asn Ser Gly Asn Thr Ala Thr Leu Thr Ile
Ser Gly Thr Gln 355 360 365Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Gln
Ser Tyr Asp Asn Phe Asp 370 375 380Ser Pro Val Phe Gly Gly Gly Thr
Lys Leu Thr Val Leu Gly Glu Gln385 390 395 400Lys Leu Ile Ser Glu
Glu Asp Leu His His His His His His 405 410120391PRTArtificial
SequencepelB-CD3VL-scFvCD138-6His 120Met Lys Tyr Leu Leu Pro Thr
Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro Ala Met Ala
Asp Ile Gln Leu Thr Gln Ser Pro Ala Ile 20 25 30Met Ser Ala Ser Pro
Gly Glu Lys Val Thr Met Thr Cys Arg Ala Ser 35 40 45Ser Ser Val Ser
Tyr Met Asn Trp Tyr Gln Gln Lys Ser Gly Thr Ser 50 55 60Pro Lys Arg
Trp Ile Tyr Asp Thr Ser Lys Val Ala Ser Gly Val Pro65 70 75 80Tyr
Arg Phe Ser Gly Ser Gly Ser Gly Thr Ser Tyr Ser Leu Thr Ile 85 90
95Ser Ser Met Glu Ala Glu Asp Ala Ala Thr Tyr Tyr Cys Gln Gln Trp
100 105 110Ser Ser Asn Pro Leu Thr Phe Gly Ala Gly Thr Lys Leu Glu
Leu Lys 115 120 125Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gln
Val Gln Leu Gln 130 135 140Gln Ser Gly Ser Glu Leu Met Pro Gly Ala
Ser Val Lys Ile Ser Cys145 150 155 160Lys Ala Thr Gly Tyr Thr Phe
Ser Asn Tyr Trp Ile Glu Trp Val Lys 165 170 175Gln Arg Pro Gly His
Gly Leu Glu Trp Ile Gly Glu Ile Leu Pro Gly 180 185 190Thr Gly Arg
Thr Ile Tyr Asn Glu Lys Phe Lys Gly Lys Ala Thr Phe 195 200 205Thr
Ala Asp Ile Ser Ser Asn Thr Val Gln Met Gln Leu Ser Ser Leu 210 215
220Thr Ser Glu Asp Ser Ala Val Tyr Tyr Cys Ala Arg Glu Gln Tyr
Tyr225 230 235 240Gly Asn Phe Tyr Tyr Ala Met Asp Tyr Trp Gly Gln
Gly Thr Ser Val 245 250 255Thr Val Ser Ser Gly Gly Gly Gly Ser Gly
Gly Gly Gly Ser Gly Gly 260 265 270Gly Gly Ser Asp Ile Gln Met Thr
Gln Ser Thr Ser Ser Leu Ser Ala 275 280 285Ser Leu Gly Asp Arg Val
Thr Ile Ser Cys Ser Ala Ser Gln Gly Ile 290 295 300Asn Asn Tyr Leu
Asn Trp Tyr Gln Gln Lys Pro Asp Gly Thr Val Glu305 310 315 320Leu
Leu Ile Tyr Tyr Thr Ser Thr Leu Gln Ser Gly Val Pro Ser Arg 325 330
335Phe Ser Gly Ser Gly Ser Gly Thr Asp Tyr Ser Leu Thr Ile Ser Asn
340 345 350Leu Glu Pro Glu Asp Ile Gly Thr Tyr Tyr Cys Gln Gln Tyr
Ser Lys 355 360 365Leu Pro Arg Thr Phe Gly Gly Gly Thr Lys Leu Glu
Ile Lys Arg Thr 370 375 380Val His His His His His His385
390121408PRTArtificial SequencepelB-CD3VH-scFvCD138-6His 121Met Lys
Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala
Gln Pro Ala Met Ala Asp Ile Lys Leu Gln Gln Ser Gly Ala Glu 20 25
30Leu Ala Arg Pro Gly Ala Ser Val Lys Met Ser Cys Lys Thr Ser Gly
35 40 45Tyr Thr Phe Thr Arg Tyr Thr Met His Trp Val Lys Gln Arg Pro
Gly 50 55 60Gln Gly Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser Arg Gly
Tyr Thr65 70 75 80Asn Tyr Asn Gln Lys Phe Lys Asp Lys Ala Thr Leu
Thr Thr Asp Lys 85 90 95Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser Ser
Leu Thr Ser Glu Asp 100 105 110Ser Ala Val Tyr Tyr Cys Ala Arg Tyr
Tyr Asp Asp His Tyr Cys Leu 115 120 125Asp Tyr Trp Gly Gln Gly Thr
Thr Leu Thr Val Ser Ser Gly Gly Gly 130 135 140Gly Ser Gly Gly Gly
Gly Ser Gly Gly Gly Gly Ser Gln Val Gln Leu145 150 155 160Gln Gln
Ser Gly Ser Glu Leu Met Pro Gly Ala Ser Val Lys Ile Ser 165 170
175Cys Lys Ala Thr Gly Tyr Thr Phe Ser Asn Tyr Trp Ile Glu Trp Val
180 185 190Lys Gln Arg Pro Gly His Gly Leu Glu Trp Ile Gly Glu Ile
Leu Pro 195 200 205Gly Thr Gly Arg Thr Ile Tyr Asn Glu Lys Phe Lys
Gly Lys Ala Thr 210 215 220Phe Thr Ala Asp Ile Ser Ser Asn Thr Val
Gln Met Gln Leu Ser Ser225 230 235
240Leu Thr Ser Glu Asp Ser Ala Val Tyr Tyr Cys Ala Arg Glu Gln Tyr
245 250 255Tyr Gly Asn Phe Tyr Tyr Ala Met Asp Tyr Trp Gly Gln Gly
Thr Ser 260 265 270Val Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly
Gly Gly Ser Gly 275 280 285Gly Gly Gly Ser Asp Ile Gln Met Thr Gln
Ser Thr Ser Ser Leu Ser 290 295 300Ala Ser Leu Gly Asp Arg Val Thr
Ile Ser Cys Ser Ala Ser Gln Gly305 310 315 320Ile Asn Asn Tyr Leu
Asn Trp Tyr Gln Gln Lys Pro Asp Gly Thr Val 325 330 335Glu Leu Leu
Ile Tyr Tyr Thr Ser Thr Leu Gln Ser Gly Val Pro Ser 340 345 350Arg
Phe Ser Gly Ser Gly Ser Gly Thr Asp Tyr Ser Leu Thr Ile Ser 355 360
365Asn Leu Glu Pro Glu Asp Ile Gly Thr Tyr Tyr Cys Gln Gln Tyr Ser
370 375 380Lys Leu Pro Arg Thr Phe Gly Gly Gly Thr Lys Leu Glu Ile
Lys Arg385 390 395 400Thr Val His His His His His His
405122404PRTArtificial SequencepelB-(aHis)VH-scFvHLA-A2(VH-VL)-myc
122Met Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1
5 10 15Ala Gln Pro Ala Met Ala Gln Val Gln Leu Gln Gln Ser Gly Pro
Glu 20 25 30Asp Val Lys Pro Gly Ala Ser Val Lys Ile Ser Cys Lys Ala
Ser Gly 35 40 45Tyr Thr Phe Thr Asp Tyr Tyr Met Asn Trp Val Lys Gln
Ser Pro Gly 50 55 60Lys Gly Leu Glu Trp Ile Gly Asp Ile Asn Pro Asn
Asn Gly Gly Thr65 70 75 80Ser Tyr Asn Gln Lys Phe Lys Gly Arg Ala
Thr Leu Thr Val Asp Lys 85 90 95Ser Ser Ser Thr Ala Tyr Met Glu Leu
Arg Ser Leu Thr Ser Glu Asp 100 105 110Ser Ser Val Tyr Tyr Cys Glu
Ser Gln Ser Gly Ala Tyr Trp Gly Gln 115 120 125Gly Thr Thr Val Thr
Val Ser Ala Gly Gly Gly Gly Ser Gly Gly Gly 130 135 140Gly Ser Gly
Gly Gln Val Gln Leu Val Gln Ser Gly Gly Gly Val Val145 150 155
160Gln Pro Gly Gly Ser Leu Arg Val Ser Cys Ala Ala Ser Gly Val Thr
165 170 175Leu Ser Asp Tyr Gly Met His Trp Val Arg Gln Ala Pro Gly
Lys Gly 180 185 190Leu Glu Trp Met Ala Phe Ile Arg Asn Asp Gly Ser
Asp Lys Tyr Tyr 195 200 205Ala Asp Ser Val Lys Gly Arg Phe Thr Ile
Ser Arg Asp Asn Ser Lys 210 215 220Lys Thr Val Ser Leu Gln Met Ser
Ser Leu Arg Ala Glu Asp Thr Ala225 230 235 240Val Tyr Tyr Cys Ala
Lys Asn Gly Glu Ser Gly Pro Leu Asp Tyr Trp 245 250 255Tyr Phe Asp
Leu Trp Gly Arg Gly Thr Leu Val Thr Val Ser Ser Gly 260 265 270Gly
Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp Val 275 280
285Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly Asp Arg
290 295 300Val Thr Ile Thr Cys Gln Ala Ser Gln Asp Ile Ser Asn Tyr
Leu Asn305 310 315 320Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys
Leu Leu Ile Tyr Asp 325 330 335Ala Ser Asn Leu Glu Thr Gly Val Pro
Ser Arg Phe Ser Gly Ser Gly 340 345 350Ser Gly Thr Asp Phe Thr Phe
Thr Ile Ser Ser Leu Gln Pro Glu Asp 355 360 365Phe Ala Thr Tyr Tyr
Cys Gln Gln Tyr Ser Ser Phe Pro Leu Thr Phe 370 375 380Gly Gly Gly
Thr Lys Val Asp Ile Lys Arg Glu Gln Lys Leu Ile Ser385 390 395
400Glu Glu Asp Leu123410PRTArtificial
SequencepelB-(aHis)VL-scFvCD45(VL-VH)-myc 123Met Lys Tyr Leu Leu
Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro Ala
Met Ala Asp Tyr Lys Asp Ile Leu Met Thr Gln Thr 20 25 30Pro Ser Ser
Leu Pro Val Ser Leu Gly Asp Gln Ala Ser Ile Ser Cys 35 40 45Arg Ser
Ser Gln Ser Ile Val His Ser Asn Gly Asn Thr Tyr Leu Glu 50 55 60Trp
Tyr Leu Gln Lys Pro Gly Gln Ser Pro Lys Leu Leu Ile Tyr Lys65 70 75
80Val Ser Asn Arg Phe Ser Gly Val Pro Asp Arg Phe Ser Gly Ser Gly
85 90 95Ser Gly Thr Asp Phe Thr Leu Lys Ile Ser Arg Val Glu Ala Glu
Asp 100 105 110Leu Gly Val Tyr Tyr Cys Phe Gln Gly Ser His Val Pro
Phe Thr Phe 115 120 125Gly Ser Gly Thr Lys Leu Glu Ile Lys Arg Gly
Gly Gly Gly Ser Gly 130 135 140Gly Gly Gly Ser Gly Gly Asp Ile Val
Leu Thr Gln Ser Pro Ala Ser145 150 155 160Leu Ala Val Ser Leu Gly
Gln Arg Ala Thr Ile Ser Cys Arg Ala Ser 165 170 175Lys Ser Val Ser
Thr Ser Gly Tyr Ser Tyr Leu His Trp Tyr Gln Gln 180 185 190Lys Pro
Gly Gln Pro Pro Lys Leu Leu Ile Tyr Leu Ala Ser Asn Leu 195 200
205Glu Ser Gly Val Pro Ala Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp
210 215 220Phe Thr Leu Asn Ile His Pro Val Glu Glu Glu Asp Ala Ala
Thr Tyr225 230 235 240Tyr Cys Gln His Ser Arg Glu Leu Pro Phe Thr
Phe Gly Ser Gly Thr 245 250 255Lys Leu Glu Ile Lys Lys Ile Ser Gly
Gly Gly Gly Ser Gly Gly Gly 260 265 270Gly Ser Gly Gly Gly Gly Ser
Ser Gln Val Gln Leu Val Glu Ser Gly 275 280 285Gly Gly Leu Val Gln
Pro Gly Gly Ser Leu Lys Leu Ser Cys Ala Ala 290 295 300Ser Gly Phe
Asp Phe Ser Arg Tyr Trp Met Ser Trp Val Arg Gln Ala305 310 315
320Pro Gly Lys Gly Leu Glu Trp Ile Gly Glu Ile Asn Pro Thr Ser Ser
325 330 335Thr Ile Asn Phe Thr Pro Ser Leu Lys Asp Lys Val Phe Ile
Ser Arg 340 345 350Asp Asn Ala Lys Asn Thr Leu Tyr Leu Gln Met Ser
Lys Val Arg Ser 355 360 365Glu Asp Thr Ala Leu Tyr Tyr Cys Ala Arg
Gly Asn Tyr Tyr Arg Tyr 370 375 380Gly Asp Ala Met Asp Tyr Trp Gly
Gln Gly Thr Ser Val Thr Val Ser385 390 395 400Glu Gln Lys Leu Ile
Ser Glu Glu Asp Leu 405 410124415PRTArtificial
SequencepelB-(aCD3)VH-scFvHLA-A2(VH-VL)-myc-6His 124Met Lys Tyr Leu
Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro
Ala Met Ala Asp Ile Lys Leu Gln Gln Ser Gly Ala Glu 20 25 30Leu Ala
Arg Pro Gly Ala Ser Val Lys Met Ser Cys Lys Thr Ser Gly 35 40 45Tyr
Thr Phe Thr Arg Tyr Thr Met His Trp Val Lys Gln Arg Pro Gly 50 55
60Gln Gly Leu Glu Trp Ile Gly Tyr Ile Asn Pro Ser Arg Gly Tyr Thr65
70 75 80Asn Tyr Asn Gln Lys Phe Lys Asp Lys Ala Thr Leu Thr Thr Asp
Lys 85 90 95Ser Ser Ser Thr Ala Tyr Met Gln Leu Ser Ser Leu Thr Ser
Glu Asp 100 105 110Ser Ala Val Tyr Tyr Cys Ala Arg Tyr Tyr Asp Asp
His Tyr Cys Leu 115 120 125Asp Tyr Trp Gly Gln Gly Thr Thr Leu Thr
Val Ser Ser Gly Gly Gly 130 135 140Gly Ser Gly Gly Gly Gly Ser Gly
Gly Gln Val Gln Leu Val Gln Ser145 150 155 160Gly Gly Gly Val Val
Gln Pro Gly Gly Ser Leu Arg Val Ser Cys Ala 165 170 175Ala Ser Gly
Val Thr Leu Ser Asp Tyr Gly Met His Trp Val Arg Gln 180 185 190Ala
Pro Gly Lys Gly Leu Glu Trp Met Ala Phe Ile Arg Asn Asp Gly 195 200
205Ser Asp Lys Tyr Tyr Ala Asp Ser Val Lys Gly Arg Phe Thr Ile Ser
210 215 220Arg Asp Asn Ser Lys Lys Thr Val Ser Leu Gln Met Ser Ser
Leu Arg225 230 235 240Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala Lys
Asn Gly Glu Ser Gly 245 250 255Pro Leu Asp Tyr Trp Tyr Phe Asp Leu
Trp Gly Arg Gly Thr Leu Val 260 265 270Thr Val Ser Ser Gly Gly Gly
Gly Ser Gly Gly Gly Gly Ser Gly Gly 275 280 285Gly Gly Ser Asp Val
Val Met Thr Gln Ser Pro Ser Ser Leu Ser Ala 290 295 300Ser Val Gly
Asp Arg Val Thr Ile Thr Cys Gln Ala Ser Gln Asp Ile305 310 315
320Ser Asn Tyr Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys
325 330 335Leu Leu Ile Tyr Asp Ala Ser Asn Leu Glu Thr Gly Val Pro
Ser Arg 340 345 350Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Phe
Thr Ile Ser Ser 355 360 365Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr
Cys Gln Gln Tyr Ser Ser 370 375 380Phe Pro Leu Thr Phe Gly Gly Gly
Thr Lys Val Asp Ile Lys Arg Glu385 390 395 400Gln Lys Leu Ile Ser
Glu Glu Asp Leu His His His His His His 405 410
415125406PRTArtificial
SequencepelB-(aCD3)VL-scFvCD45(VL-VH)-myc-6His 125Met Lys Tyr Leu
Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro
Ala Met Ala Asp Ile Gln Leu Thr Gln Ser Pro Ala Ile 20 25 30Met Ser
Ala Ser Pro Gly Glu Lys Val Thr Met Thr Cys Arg Ala Ser 35 40 45Ser
Ser Val Ser Tyr Met Asn Trp Tyr Gln Gln Lys Ser Gly Thr Ser 50 55
60Pro Lys Arg Trp Ile Tyr Asp Thr Ser Lys Val Ala Ser Gly Val Pro65
70 75 80Tyr Arg Phe Ser Gly Ser Gly Ser Gly Thr Ser Tyr Ser Leu Thr
Ile 85 90 95Ser Ser Met Glu Ala Glu Asp Ala Ala Thr Tyr Tyr Cys Gln
Gln Trp 100 105 110Ser Ser Asn Pro Leu Thr Phe Gly Ala Gly Thr Lys
Leu Glu Leu Lys 115 120 125Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser
Gly Gly Asp Ile Val Leu 130 135 140Thr Gln Ser Pro Ala Ser Leu Ala
Val Ser Leu Gly Gln Arg Ala Thr145 150 155 160Ile Ser Cys Arg Ala
Ser Lys Ser Val Ser Thr Ser Gly Tyr Ser Tyr 165 170 175Leu His Trp
Tyr Gln Gln Lys Pro Gly Gln Pro Pro Lys Leu Leu Ile 180 185 190Tyr
Leu Ala Ser Asn Leu Glu Ser Gly Val Pro Ala Arg Phe Ser Gly 195 200
205Ser Gly Ser Gly Thr Asp Phe Thr Leu Asn Ile His Pro Val Glu Glu
210 215 220Glu Asp Ala Ala Thr Tyr Tyr Cys Gln His Ser Arg Glu Leu
Pro Phe225 230 235 240Thr Phe Gly Ser Gly Thr Lys Leu Glu Ile Lys
Lys Ile Ser Gly Gly 245 250 255Gly Gly Ser Gly Gly Gly Gly Ser Gly
Gly Gly Gly Ser Ser Gln Val 260 265 270Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly Ser Leu 275 280 285Lys Leu Ser Cys Ala
Ala Ser Gly Phe Asp Phe Ser Arg Tyr Trp Met 290 295 300Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Ile Gly Glu305 310 315
320Ile Asn Pro Thr Ser Ser Thr Ile Asn Phe Thr Pro Ser Leu Lys Asp
325 330 335Lys Val Phe Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
Leu Gln 340 345 350Met Ser Lys Val Arg Ser Glu Asp Thr Ala Leu Tyr
Tyr Cys Ala Arg 355 360 365Gly Asn Tyr Tyr Arg Tyr Gly Asp Ala Met
Asp Tyr Trp Gly Gln Gly 370 375 380Thr Ser Val Thr Val Ser Glu Gln
Lys Leu Ile Ser Glu Glu Asp Leu385 390 395 400His His His His His
His 405126415PRTArtificial SequencepelB-VHaDIG-scFvEGFR-FLAG-6HIS
126Met Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1
5 10 15Ala Gln Pro Ala Met Ala Glu Val Gln Leu Val Glu Ser Gly Gly
Gly 20 25 30Leu Val Lys Pro Gly Gly Ser Leu Lys Leu Ser Cys Ala Val
Ser Gly 35 40 45Phe Thr Phe Ser Asp Tyr Ala Met Ser Trp Ile Arg Gln
Thr Pro Glu 50 55 60Asn Arg Leu Glu Trp Val Ala Ser Ile Asn Ile Gly
Ala Thr Tyr Ala65 70 75 80Tyr Tyr Pro Asp Ser Val Lys Gly Arg Phe
Thr Ile Ser Arg Asp Asn 85 90 95Ala Lys Asn Thr Leu Phe Leu Gln Met
Ser Ser Leu Gly Ser Glu Asp 100 105 110Thr Ala Met Tyr Tyr Cys Ala
Arg Pro Gly Ser Pro Tyr Glu Tyr Asp 115 120 125Lys Ala Tyr Tyr Ser
Met Ala Tyr Trp Gly Pro Gly Thr Ser Val Thr 130 135 140Val Ser Ser
Ala Lys Thr Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser145 150 155
160Gln Val Gln Leu Gln Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Glu
165 170 175Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Val Ser
Ser Gly 180 185 190Asp Tyr Tyr Trp Thr Trp Ile Arg Gln Ser Pro Gly
Lys Gly Leu Glu 195 200 205Trp Ile Gly His Ile Tyr Tyr Ser Gly Asn
Thr Asn Tyr Asn Pro Ser 210 215 220Leu Lys Ser Arg Leu Thr Ile Ser
Ile Asp Thr Ser Lys Thr Gln Phe225 230 235 240Ser Leu Lys Leu Ser
Ser Val Thr Ala Ala Asp Thr Ala Ile Tyr Tyr 245 250 255Cys Val Arg
Asp Arg Val Thr Gly Ala Phe Asp Ile Trp Gly Gln Gly 260 265 270Thr
Met Val Thr Val Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly 275 280
285Ser Gly Gly Gly Gly Ser Asp Ile Gln Met Thr Gln Ser Pro Ser Ser
290 295 300Leu Ser Ala Ser Val Gly Asp Arg Val Thr Ile Thr Cys Gln
Ala Ser305 310 315 320Gln Asp Ile Ser Asn Tyr Leu Asn Trp Tyr Gln
Gln Lys Pro Gly Lys 325 330 335Ala Pro Lys Leu Leu Ile Tyr Asp Ala
Ser Asn Leu Glu Thr Gly Val 340 345 350Pro Ser Arg Phe Ser Gly Ser
Gly Ser Gly Thr Asp Phe Thr Phe Thr 355 360 365Ile Ser Ser Leu Gln
Pro Glu Asp Ile Ala Thr Tyr Phe Cys Gln His 370 375 380Phe Asp His
Leu Pro Leu Ala Phe Gly Gly Gly Thr Lys Val Glu Ile385 390 395
400Lys Asp Tyr Lys Asp Asp Asp Asp Lys His His His His His His 405
410 415127412PRTArtificial SequencepelB-VLaDIG-scFvEpCAM-myc-6HIS
127Met Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1
5 10 15Ala Gln Pro Ala Met Ala Asp Val Gln Met Thr Gln Ser Thr Ser
Ser 20 25 30Leu Ser Ala Ser Leu Gly Asp Arg Val Thr Ile Ser Cys Arg
Ala Ser 35 40 45Gln Asp Ile Lys Asn Tyr Leu Asn Trp Tyr Gln Gln Lys
Pro Gly Gly 50 55 60Thr Val Lys Leu Leu Ile Tyr Tyr Ser Ser Thr Leu
Leu Ser Gly Val65 70 75 80Pro Ser Arg Phe Ser Gly Arg Gly Ser Gly
Thr Asp Phe Ser Leu Thr 85 90 95Ile Thr Asn Leu Glu Arg Glu Asp Ile
Ala Thr Tyr Phe Cys Gln Gln 100 105 110Ser Ile Thr Leu Pro Pro Thr
Phe Gly Gly Gly Thr Lys Leu Glu Ile 115 120 125Lys Arg Ala Asp Ala
Ala Pro Thr Val Ser Ile Phe Gly Gly Ser Gly 130 135 140Gly Gly Gly
Ser Glu Val Gln Leu Leu Glu Gln Ser Gly Ala Glu Leu145 150 155
160Val Arg Pro Gly Thr Ser Val Lys Ile Ser Cys Lys Ala Ser Gly Tyr
165 170 175Ala Phe Thr Asn Tyr Trp Leu Gly Trp Val Lys Gln Arg Pro
Gly His 180 185 190Gly Leu Glu Trp Ile Gly Asp Ile Phe Pro Gly
Ser
Gly Asn Ile His 195 200 205Tyr Asn Glu Lys Phe Lys Gly Lys Ala Thr
Leu Thr Ala Asp Lys Ser 210 215 220Ser Ser Thr Ala Tyr Met Gln Leu
Ser Ser Leu Thr Phe Glu Asp Ser225 230 235 240Ala Val Tyr Phe Cys
Ala Arg Leu Arg Asn Trp Asp Glu Pro Met Asp 245 250 255Tyr Trp Gly
Gln Gly Thr Thr Val Thr Val Ser Ser Gly Gly Gly Gly 260 265 270Ser
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Leu Val Met Thr 275 280
285Gln Ser Pro Ser Ser Leu Thr Val Thr Ala Gly Glu Lys Val Thr Met
290 295 300Ser Cys Lys Ser Ser Gln Ser Leu Leu Asn Ser Gly Asn Gln
Lys Asn305 310 315 320Tyr Leu Thr Trp Tyr Gln Gln Lys Pro Gly Gln
Pro Pro Lys Leu Leu 325 330 335Ile Tyr Trp Ala Ser Thr Arg Glu Ser
Gly Val Pro Asp Arg Phe Thr 340 345 350Gly Ser Gly Ser Gly Thr Asp
Phe Thr Leu Thr Ile Ser Ser Val Gln 355 360 365Ala Glu Asp Leu Ala
Val Tyr Tyr Cys Gln Asn Asp Tyr Ser Tyr Pro 370 375 380Leu Thr Phe
Gly Ala Gly Thr Lys Leu Glu Ile Lys Glu Gln Lys Leu385 390 395
400Ile Ser Glu Glu Asp Leu His His His His His His 405
410128400PRTArtificial SequencepelB-murineCD3VH-scFvEpCAM-6His
128Met Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1
5 10 15Ala Gln Pro Ala Met Ala Glu Val Gln Leu Val Glu Ser Gly Gly
Gly 20 25 30Leu Val Gln Pro Gly Lys Ser Leu Lys Leu Ser Cys Glu Ala
Ser Gly 35 40 45Phe Thr Phe Ser Gly Tyr Gly Met His Trp Val Arg Gln
Ala Pro Gly 50 55 60Arg Gly Leu Glu Ser Val Ala Tyr Ile Thr Ser Ser
Ser Ile Asn Ile65 70 75 80Lys Tyr Ala Asp Ala Val Lys Gly Arg Phe
Thr Val Ser Arg Asp Asn 85 90 95Ala Lys Asn Leu Leu Phe Leu Gln Met
Asn Ile Leu Lys Ser Glu Asp 100 105 110Thr Ala Met Tyr Tyr Cys Ala
Arg Phe Asp Trp Asp Lys Asn Tyr Trp 115 120 125Gly Gln Gly Thr Met
Val Thr Val Ser Ser Ala Lys Thr Ser Ser Gly 130 135 140Gly Gly Glu
Val Gln Leu Leu Glu Gln Ser Gly Ala Glu Leu Val Arg145 150 155
160Pro Gly Thr Ser Val Lys Ile Ser Cys Lys Ala Ser Gly Tyr Ala Phe
165 170 175Thr Asn Tyr Trp Leu Gly Trp Val Lys Gln Arg Pro Gly His
Gly Leu 180 185 190Glu Trp Ile Gly Asp Ile Phe Pro Gly Ser Gly Asn
Ile His Tyr Asn 195 200 205Glu Lys Phe Lys Gly Lys Ala Thr Leu Thr
Ala Asp Lys Ser Ser Ser 210 215 220Thr Ala Tyr Met Gln Leu Ser Ser
Leu Thr Phe Glu Asp Ser Ala Val225 230 235 240Tyr Phe Cys Ala Arg
Leu Arg Asn Trp Asp Glu Pro Met Asp Tyr Trp 245 250 255Gly Gln Gly
Thr Thr Val Thr Val Ser Ser Gly Gly Gly Gly Ser Gly 260 265 270Gly
Gly Gly Ser Gly Gly Gly Gly Ser Glu Leu Val Met Thr Gln Ser 275 280
285Pro Ser Ser Leu Thr Val Thr Ala Gly Glu Lys Val Thr Met Ser Cys
290 295 300Lys Ser Ser Gln Ser Leu Leu Asn Ser Gly Asn Gln Lys Asn
Tyr Leu305 310 315 320Thr Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro
Lys Leu Leu Ile Tyr 325 330 335Trp Ala Ser Thr Arg Glu Ser Gly Val
Pro Asp Arg Phe Thr Gly Ser 340 345 350Gly Ser Gly Thr Asp Phe Thr
Leu Thr Ile Ser Ser Val Gln Ala Glu 355 360 365Asp Leu Ala Val Tyr
Tyr Cys Gln Asn Asp Tyr Ser Tyr Pro Leu Thr 370 375 380Phe Gly Ala
Gly Thr Lys Leu Glu Ile Lys His His His His His His385 390 395
400129384PRTArtificial SequencepelB-murineCD3VL-scFvEGFR1-6His
129Met Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1
5 10 15Ala Gln Pro Ala Met Ala Asp Ile Gln Met Thr Gln Ser Pro Ser
Ser 20 25 30Leu Pro Ala Ser Leu Gly Asp Arg Val Thr Ile Asn Cys Gln
Ala Ser 35 40 45Gln Asp Ile Ser Asn Tyr Leu Asn Trp Tyr Gln Gln Lys
Pro Gly Lys 50 55 60Ala Pro Lys Leu Leu Ile Tyr Tyr Thr Asn Lys Leu
Ala Asp Gly Val65 70 75 80Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly
Arg Asp Ser Ser Phe Thr 85 90 95Ile Ser Ser Leu Glu Ser Glu Asp Ile
Gly Ser Tyr Tyr Cys Gln Gln 100 105 110Tyr Tyr Asn Tyr Pro Trp Thr
Phe Gly Pro Gly Thr Lys Leu Glu Ile 115 120 125Lys Arg Ala Asp Ser
Ser Gly Gly Gly Gln Val Gln Leu Gln Glu Ser 130 135 140Gly Pro Gly
Leu Val Lys Pro Ser Glu Thr Leu Ser Leu Thr Cys Thr145 150 155
160Val Ser Gly Gly Ser Val Ser Ser Gly Asp Tyr Tyr Trp Thr Trp Ile
165 170 175Arg Gln Ser Pro Gly Lys Gly Leu Glu Trp Ile Gly His Ile
Tyr Tyr 180 185 190Ser Gly Asn Thr Asn Tyr Asn Pro Ser Leu Lys Ser
Arg Leu Thr Ile 195 200 205Ser Ile Asp Thr Ser Lys Thr Gln Phe Ser
Leu Lys Leu Ser Ser Val 210 215 220Thr Ala Ala Asp Thr Ala Ile Tyr
Tyr Cys Val Arg Asp Arg Val Thr225 230 235 240Gly Ala Phe Asp Ile
Trp Gly Gln Gly Thr Met Val Thr Val Ser Ser 245 250 255Gly Gly Gly
Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp 260 265 270Ile
Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly Asp 275 280
285Arg Val Thr Ile Thr Cys Gln Ala Ser Gln Asp Ile Ser Asn Tyr Leu
290 295 300Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu
Ile Tyr305 310 315 320Asp Ala Ser Asn Leu Glu Thr Gly Val Pro Ser
Arg Phe Ser Gly Ser 325 330 335Gly Ser Gly Thr Asp Phe Thr Phe Thr
Ile Ser Ser Leu Gln Pro Glu 340 345 350Asp Ile Ala Thr Tyr Phe Cys
Gln His Phe Asp His Leu Pro Leu Ala 355 360 365Phe Gly Gly Gly Thr
Lys Val Glu Ile Lys His His His His His His 370 375
380130558PRTArtificial SequencepelB-ta(DIG*EpCAM)-Myc-6HIS 130Met
Lys Tyr Leu Leu Pro Thr Ala Ala Ala Gly Leu Leu Leu Leu Ala1 5 10
15Ala Gln Pro Ala Met Ala Glu Val Gln Leu Val Glu Ser Gly Gly Gly
20 25 30Leu Val Lys Pro Gly Gly Ser Leu Lys Leu Ser Cys Ala Val Ser
Gly 35 40 45Phe Thr Phe Ser Asp Tyr Ala Met Ser Trp Ile Arg Gln Thr
Pro Glu 50 55 60Asn Arg Leu Glu Trp Val Ala Ser Ile Asn Ile Gly Ala
Thr Tyr Ala65 70 75 80Tyr Tyr Pro Asp Ser Val Lys Gly Arg Phe Thr
Ile Ser Arg Asp Asn 85 90 95Ala Lys Asn Thr Leu Phe Leu Gln Met Ser
Ser Leu Gly Ser Glu Asp 100 105 110Thr Ala Met Tyr Tyr Cys Ala Arg
Pro Gly Ser Pro Tyr Glu Tyr Asp 115 120 125Lys Ala Tyr Tyr Ser Met
Ala Tyr Trp Gly Pro Gly Thr Ser Val Thr 130 135 140Val Ser Ser Ala
Lys Thr Ser Ser Gly Gly Gly Gly Ser Gly Gly Gly145 150 155 160Gly
Ser Gly Gly Gly Gly Ser Gly Asp Val Gln Met Thr Gln Ser Thr 165 170
175Ser Ser Leu Ser Ala Ser Leu Gly Asp Arg Val Thr Ile Ser Cys Arg
180 185 190Ala Ser Gln Asp Ile Lys Asn Tyr Leu Asn Trp Tyr Gln Gln
Lys Pro 195 200 205Gly Gly Thr Val Lys Leu Leu Ile Tyr Tyr Ser Ser
Thr Leu Leu Ser 210 215 220Gly Val Pro Ser Arg Phe Ser Gly Arg Gly
Ser Gly Thr Asp Phe Ser225 230 235 240Leu Thr Ile Thr Asn Leu Glu
Arg Glu Asp Ile Ala Thr Tyr Phe Cys 245 250 255Gln Gln Ser Ile Thr
Leu Pro Pro Thr Phe Gly Gly Gly Thr Lys Leu 260 265 270Glu Ile Lys
Arg Ala Asp Ala Ala Pro Thr Val Ser Ile Phe Gly Gly 275 280 285Ser
Gly Gly Gly Gly Ser Glu Val Gln Leu Leu Glu Gln Ser Gly Ala 290 295
300Glu Leu Val Arg Pro Gly Thr Ser Val Lys Ile Ser Cys Lys Ala
Ser305 310 315 320Gly Tyr Ala Phe Thr Asn Tyr Trp Leu Gly Trp Val
Lys Gln Arg Pro 325 330 335Gly His Gly Leu Glu Trp Ile Gly Asp Ile
Phe Pro Gly Ser Gly Asn 340 345 350Ile His Tyr Asn Glu Lys Phe Lys
Gly Lys Ala Thr Leu Thr Ala Asp 355 360 365Lys Ser Ser Ser Thr Ala
Tyr Met Gln Leu Ser Ser Leu Thr Phe Glu 370 375 380Asp Ser Ala Val
Tyr Phe Cys Ala Arg Leu Arg Asn Trp Asp Glu Pro385 390 395 400Met
Asp Tyr Trp Gly Gln Gly Thr Thr Val Thr Val Ser Ser Gly Gly 405 410
415Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Leu Val
420 425 430Met Thr Gln Ser Pro Ser Ser Leu Thr Val Thr Ala Gly Glu
Lys Val 435 440 445Thr Met Ser Cys Lys Ser Ser Gln Ser Leu Leu Asn
Ser Gly Asn Gln 450 455 460Lys Asn Tyr Leu Thr Trp Tyr Gln Gln Lys
Pro Gly Gln Pro Pro Lys465 470 475 480Leu Leu Ile Tyr Trp Ala Ser
Thr Arg Glu Ser Gly Val Pro Asp Arg 485 490 495Phe Thr Gly Ser Gly
Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser 500 505 510Val Gln Ala
Glu Asp Leu Ala Val Tyr Tyr Cys Gln Asn Asp Tyr Ser 515 520 525Tyr
Pro Leu Thr Phe Gly Ala Gly Thr Lys Leu Glu Ile Lys Glu Gln 530 535
540Lys Leu Ile Ser Glu Glu Asp Leu His His His His His His545 550
5551319PRTArtificial SequenceAnti-DIG VL CDR3 131Gln Gln Ser Ile
Thr Leu Pro Pro Thr1 51328PRTArtificial SequenceAnti-CD45 VH CDR1
132Gly Phe Asp Phe Ser Arg Tyr Trp1 51338PRTArtificial
SequenceAnti-CD45 VH CDR2 133Ile Asn Pro Thr Ser Ser Thr Ile1
513414PRTArtificial SequenceAnti-CD45 VH CDR3 134Ala Arg Gly Asn
Tyr Tyr Arg Tyr Gly Asp Ala Met Asp Tyr1 5 101351167DNAArtificial
SequenceNucleotide sequence encoding pelB-CD3VL-
scFvEPCAM(VH-VL)-6His 135atgaaatacc tgctgccgac cgctgctgct
ggtctgctgc tcctcgctgc ccagccggcg 60atggccgaca ttcagctgac ccagtctcca
gcaatcatgt ctgcatctcc aggggagaag 120gtcaccatga cctgcagagc
cagttcaagt gtaagttaca tgaactggta ccagcagaag 180tcaggcacct
cccccaaaag atggatttat gacacatcca aagtggcttc tggagtccct
240tatcgcttca gtggcagtgg gtctgggacc tcatactctc tcacaatcag
cagcatggag 300gctgaagatg ctgccactta ttactgccaa cagtggagta
gtaacccgct cacgttcggt 360gctgggacca agctggagct gaaatccgga
ggtggtggat ccgaggtgca gctgctcgag 420cagtctggag ctgagctggt
aaggcctggg acttcagtga agatatcctg caaggcttct 480ggatacgcct
tcactaacta ctggctaggt tgggtaaagc agaggcctgg acatggactt
540gagtggattg gagatatttt ccctggaagt ggtaatatcc actacaatga
gaagttcaag 600ggcaaagcca cactgactgc agacaaatct tcgagcacag
cctatatgca gctcagtagc 660ctgacatttg aggactctgc tgtctatttc
tgtgcaagac tgaggaactg ggacgagcct 720atggactact ggggccaagg
gaccacggtc accgtctcct caggtggtgg tggttctggc 780ggcggcggct
ccggtggtgg tggttctgag ctcgtgatga cacagtctcc atcctccctg
840actgtgacag caggagagaa ggtcactatg agctgcaagt ccagtcagag
tctgttaaac 900agtggaaatc aaaagaacta cttgacctgg taccagcaga
aaccagggca gcctcctaaa 960ctgttgatct actgggcatc cactagggaa
tctggggtcc ctgatcgctt cacaggcagt 1020ggatctggaa cagatttcac
tctcaccatc agcagtgtgc aggctgaaga cctggcagtt 1080tattactgtc
agaatgatta tagttatccg ctcacgttcg gtgctgggac caagcttgag
1140atcaaacatc atcaccatca tcattag 11671361215DNAArtificial
SequenceNucleotide sequence encoding pelB-CD3VH- scFvHer2/neu-6HIS
136atgaaatacc tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc
ccagccggcg 60atggccgata tcaaactgca gcagtcaggg gctgaactgg caagacctgg
ggcctcagtg 120aagatgtcct gcaagacttc tggctacacc tttactaggt
acacgatgca ctgggtaaaa 180cagaggcctg gacagggtct ggaatggatt
ggatacatta atcctagccg tggttatact 240aattacaatc agaagttcaa
ggacaaggcc acattgacta cagacaaatc ctccagcaca 300gcctacatgc
aactgagcag cctgacatct gaggactctg cagtctatta ctgtgcaaga
360tattatgatg atcattactg ccttgactac tggggccaag gcaccactct
cacagtctcc 420tcaggtggtg gtggttctgg cggcggcggc tccggtggtg
gtggttctga ggttcagctg 480gtggagtctg gcggtggcct ggtgcagcca
gggggctcac tccgtttgtc ctgtgcagct 540tctggcttca acattaaaga
cacctatata cactgggtgc gtcaggcccc gggtaagggc 600ctggaatggg
ttgcaaggat ttatcctacg aatggttata ctagatatgc cgatagcgtc
660aagggccgtt tcactataag cgcagacaca tccaaaaaca cagcctacct
gcagatgaac 720agcctgcgtg ctgaggacac tgccgtctat tattgttcta
ggtggggagg ggacggcttc 780tatgctatgg actattgggg tcaaggaacc
ctggtcactg tctcctccgg tggtggtggt 840tctggcggcg gcggctccgg
tggtggtggt tctgatatcc agatgaccca gtccccgagc 900tccctgtccg
cctctgtggg cgatagggtc accatcacct gccgtgccag tcaggatgtg
960aatactgctg tagcctggta tcaacagaaa ccaggaaaag ctccgaaact
actgatttac 1020tcggcatcct tcctctactc tggagtccct tctcgcttct
ctggatccag atctgggacg 1080gatttcactc tgaccatcag cagtctgcag
ccggaagact tcgcaactta ttactgtcag 1140caacattata ctactcctcc
cacgttcgga cagggtacca aggtggagat caaacatcat 1200caccatcatc attag
12151371212DNAArtificial SequenceNucleotide sequence encoding
pelB-CD3VH- scFvEGFR1-6HIS 137atgaaatacc tgctgccgac cgctgctgct
ggtctgctgc tcctcgctgc ccagccggcg 60atggccgata tcaaactgca gcagtcaggg
gctgaactgg caagacctgg ggcctcagtg 120aagatgtcct gcaagacttc
tggctacacc tttactaggt acacgatgca ctgggtaaaa 180cagaggcctg
gacagggtct ggaatggatt ggatacatta atcctagccg tggttatact
240aattacaatc agaagttcaa ggacaaggcc acattgacta cagacaaatc
ctccagcaca 300gcctacatgc aactgagcag cctgacatct gaggactctg
cagtctatta ctgtgcaaga 360tattatgatg atcattactg ccttgactac
tggggccaag gcaccactct cacagtctcc 420tcaggtggtg gtggttctgg
cggcggcggc tccggtggtg gtggttctca ggtgcagctg 480caggagtcgg
gcccaggact ggtgaagcct tcggagaccc tgtccctcac ctgcactgtc
540tctggtggct ccgtcagcag tggtgattac tactggacct ggatccggca
gtccccaggg 600aagggactgg agtggattgg acacatctat tacagtggga
acaccaatta taacccctcc 660ctcaagagcc gactcaccat atcaattgac
acgtccaaga ctcagttctc cctgaagctg 720agttctgtga ccgctgcgga
cacggccatt tattactgtg tgcgagatcg agtgactggt 780gcttttgata
tctggggcca agggacaatg gtcaccgtct cttccggtgg tggtggttct
840ggcggcggcg gctccggtgg tggtggttct gacatccaga tgacccagtc
tccatcctcc 900ctgtctgcat ctgtcggaga cagagtcacc atcacttgcc
aggcgagtca ggacatcagc 960aactatttaa attggtatca gcagaaacca
gggaaagccc ctaaactcct gatctacgat 1020gcatccaatt tggaaacagg
ggtcccatca aggttcagtg gaagtggatc tgggacagat 1080tttactttca
ccatcagcag cctgcagcct gaagatattg caacatattt ctgtcaacac
1140tttgatcatc tcccgctcgc tttcggcgga gggaccaagg tggagatcaa
acatcatcac 1200catcatcatt ag 12121381245DNAArtificial
SequenceNucleotide sequence encoding pelB-CD3VH- scFvCEA-6HIS
138atgaaatacc tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc
ccagccggcg 60atggccgata tcaaactgca gcagtcaggg gctgaactgg caagacctgg
ggcctcagtg 120aagatgtcct gcaagacttc tggctacacc tttactaggt
acacgatgca ctgggtaaaa 180cagaggcctg gacagggtct ggaatggatt
ggatacatta atcctagccg tggttatact 240aattacaatc agaagttcaa
ggacaaggcc acattgacta cagacaaatc ctccagcaca 300gcctacatgc
aactgagcag cctgacatct gaggactctg cagtctatta ctgtgcaaga
360tattatgatg atcattactg ccttgactac tggggccaag gcaccactct
cacagtctcc 420tcaggtggtg gtggttctgg cggcggcggc tccggtggtg
gtggttcttc tagagtggcc 480caggtgcaac tgcagcagtc aggggctgag
ctggctagac ctggggcttc agtgaagatg 540tcctgcaagg cttctggcta
cacctttact acctacacaa tacactgggt aagacagagg 600cctggacacg
atctggaatg gattggatac attaatccta gcagtggata ttctgactac
660aatcaaaact tcaagggcaa gaccacattg actgcagaca agtcctccaa
cacagcctac 720atgcaactga acagcctgac atctgaggac tctgcggtct
attactgtgc aagaagagcg 780gactatggta actacgaata tacctggttt
gcttactggg gccaagggac cacggtcacc 840gtctcctcag gtggaggcgg
ttcaggcgga ggtggctctg gcggtggcgg atcggacatc 900gagctcactc
agtctccaaa attcatgtcc acatcagtag gagacagggt caacgtcacc
960tacaaggcca gtcagaatgt gggtactaat gtagcctggt ttcaacaaaa
accagggcaa 1020tctcctaaag ttctgattta
ctcggcatct taccgataca gtggagtccc tgatcgcttc 1080acaggcagtg
gatctggaac agatttcact ctcaccatca gcaatgtgca gtctgaagac
1140ttggcagagt atttctgtca gcaatatcac acctatcctc tcacgttcgg
agggggcacc 1200aagctggaaa tcaaacgggc ggatcatcat caccatcatc attag
12451391179DNAArtificial SequenceNucleotide sequence encoding
pelB-CD3VL- scFvCEA-6HIS 139atgaaatacc tgctgccgac cgctgctgct
ggtctgctgc tcctcgctgc ccagccggcg 60atggccgaca ttcagctgac ccagtctcca
gcaatcatgt ctgcatctcc aggggagaag 120gtcaccatga cctgcagagc
cagttcaagt gtaagttaca tgaactggta ccagcagaag 180tcaggcacct
cccccaaaag atggatttat gacacatcca aagtggcttc tggagtccct
240tatcgcttca gtggcagtgg gtctgggacc tcatactctc tcacaatcag
cagcatggag 300gctgaagatg ctgccactta ttactgccaa cagtggagta
gtaacccgct cacgttcggt 360gctgggacca agctggagct gaaatccgga
ggtggtggat cctctagagt ggcccaggtg 420caactgcagc agtcaggggc
tgagctggct agacctgggg cttcagtgaa gatgtcctgc 480aaggcttctg
gctacacctt tactacctac acaatacact gggtaagaca gaggcctgga
540cacgatctgg aatggattgg atacattaat cctagcagtg gatattctga
ctacaatcaa 600aacttcaagg gcaagaccac attgactgca gacaagtcct
ccaacacagc ctacatgcaa 660ctgaacagcc tgacatctga ggactctgcg
gtctattact gtgcaagaag agcggactat 720ggtaactacg aatatacctg
gtttgcttac tggggccaag ggaccacggt caccgtctcc 780tcaggtggag
gcggttcagg cggaggtggc tctggcggtg gcggatcgga catcgagctc
840actcagtctc caaaattcat gtccacatca gtaggagaca gggtcaacgt
cacctacaag 900gccagtcaga atgtgggtac taatgtagcc tggtttcaac
aaaaaccagg gcaatctcct 960aaagttctga tttactcggc atcttaccga
tacagtggag tccctgatcg cttcacaggc 1020agtggatctg gaacagattt
cactctcacc atcagcaatg tgcagtctga agacttggca 1080gagtatttct
gtcagcaata tcacacctat cctctcacgt tcggaggggg caccaagctg
1140gaaatcaaac gggcggatca tcatcaccat catcattag
11791401245DNAArtificial SequenceNucleotide sequence encoding
pelB-(aCD3)VH- scFvHLA-Cw6-myc-6His 140atgaaatacc tgctgccgac
cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggccgata tcaaactgca
gcagtcaggg gctgaactgg caagacctgg ggcctcagtg 120aagatgtcct
gcaagacttc tggctacacc tttactaggt acacgatgca ctgggtaaaa
180cagaggcctg gacagggtct ggaatggatt ggatacatta atcctagccg
tggttatact 240aattacaatc agaagttcaa ggacaaggcc acattgacta
cagacaaatc ctccagcaca 300gcctacatgc aactgagcag cctgacatct
gaggactctg cagtctatta ctgtgcaaga 360tattatgatg atcattactg
ccttgactac tggggccaag gcaccactct cacagtctcc 420tcaggcggcg
gcggcagcgg cggcggcggc agcggcggcg aagtgcagct ggtggaaagc
480ggcggcggcc tggtgcagcc gggcggcagc ctgcgcctga gctgcgcggc
gagcggcttt 540acctttagca gctatgcgat gagctgggtg cgccaggcgc
cgggcaaagg cctggaatgg 600gtgagcgcga ttagcggcag cggcggcagc
acctattatg cggatagcgt gaaaggccgc 660tttaccatta gccgcgataa
cagcaaaaac accctgtatc tgcagatgaa cagcctgcgc 720gcggaagata
ccgcggtgta ttattgcgcg cgctatagct ttagctggtt tgatgtgtgg
780ggccagggca ccctggtgac cgtgagcagc gcgggcggcg gcagcggcgg
cggcggcagc 840ggcggcggcg gcagcggcgg cggcggcagc gatattgaac
tgacccagcc gccgagcgtg 900agcgtggcgc cgggccagac cgcgcgcatt
agctgcagcg gcgatgcgct gggcgataaa 960tatgcgagct ggtatcagca
gaaaccgggc caggcgccgg tgctggtgat ttatgatgat 1020agcgatcgcc
cgagcggcat tccggaacgc tttagcggca gcaacagcgg caacaccgcg
1080accctgacca ttagcggcac ccaggcggaa gatgaagcgg attattattg
ccagagctat 1140gataactttg atagcccggt gtttggcggc ggcaccaaac
tgaccgtgct gggcgaacaa 1200aaactcatct cagaagagga tctgcatcat
caccatcatc attag 12451411176DNAArtificial SequenceNucleotide
sequence encoding pelB-CD3VL- scFvCD138-6His 141atgaaatacc
tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggccgaca
ttcagctgac ccagtctcca gcaatcatgt ctgcatctcc aggggagaag
120gtcaccatga cctgcagagc cagttcaagt gtaagttaca tgaactggta
ccagcagaag 180tcaggcacct cccccaaaag atggatttat gacacatcca
aagtggcttc tggagtccct 240tatcgcttca gtggcagtgg gtctgggacc
tcatactctc tcacaatcag cagcatggag 300gctgaagatg ctgccactta
ttactgccaa cagtggagta gtaacccgct cacgttcggt 360gctgggacca
agctggagct gaaatccgga ggtggtggat ccggaggtgg tggatcccag
420gtgcagctgc agcagagcgg cagcgaactg atgccgggcg cgagcgtgaa
aattagctgc 480aaagcgaccg gctatacctt tagcaactat tggattgaat
gggtgaaaca gcgcccgggc 540catggcctgg aatggattgg cgaaattctg
ccgggcaccg gccgcaccat ttataacgaa 600aaatttaaag gcaaagcgac
ctttaccgcg gatattagca gcaacaccgt gcagatgcag 660ctgagcagcc
tgaccagcga agatagcgcg gtgtattatt gcgcgcgcga acagtattat
720ggcaactttt attatgcgat ggattattgg ggccagggca ccagcgtgac
cgtgagcagc 780ggcggcggcg gcagcggcgg cggcggcagc ggcggcggcg
gcagcgatat tcagatgacc 840cagagcacca gcagcctgag cgcgagcctg
ggcgatcgcg tgaccattag ctgcagcgcg 900agccagggca ttaacaacta
tctgaactgg tatcagcaga aaccggatgg caccgtggaa 960ctgctgattt
attataccag caccctgcag agcggcgtgc cgagccgctt tagcggcagc
1020ggcagcggca ccgattatag cctgaccatt agcaacctgg aaccggaaga
tattggcacc 1080tattattgcc agcagtatag caaactgccg cgcacctttg
gcggcggcac caaactggaa 1140attaaacgca ccgtgcatca tcaccatcat cattag
11761421227DNAArtificial SequenceNucleotide sequence encoding
pelB-CD3VH- scFvCD138-6His 142atgaaatacc tgctgccgac cgctgctgct
ggtctgctgc tcctcgctgc ccagccggcg 60atggccgata tcaaactgca gcagtcaggg
gctgaactgg caagacctgg ggcctcagtg 120aagatgtcct gcaagacttc
tggctacacc tttactaggt acacgatgca ctgggtaaaa 180cagaggcctg
gacagggtct ggaatggatt ggatacatta atcctagccg tggttatact
240aattacaatc agaagttcaa ggacaaggcc acattgacta cagacaaatc
ctccagcaca 300gcctacatgc aactgagcag cctgacatct gaggactctg
cagtctatta ctgtgcaaga 360tattatgatg atcattactg ccttgactac
tggggccaag gcaccactct cacagtctcc 420tcaggtggtg gtggttctgg
cggcggcggc tccggtggtg gtggttctca ggtgcagctg 480cagcagagcg
gcagcgaact gatgccgggc gcgagcgtga aaattagctg caaagcgacc
540ggctatacct ttagcaacta ttggattgaa tgggtgaaac agcgcccggg
ccatggcctg 600gaatggattg gcgaaattct gccgggcacc ggccgcacca
tttataacga aaaatttaaa 660ggcaaagcga cctttaccgc ggatattagc
agcaacaccg tgcagatgca gctgagcagc 720ctgaccagcg aagatagcgc
ggtgtattat tgcgcgcgcg aacagtatta tggcaacttt 780tattatgcga
tggattattg gggccagggc accagcgtga ccgtgagcag cggcggcggc
840ggcagcggcg gcggcggcag cggcggcggc ggcagcgata ttcagatgac
ccagagcacc 900agcagcctga gcgcgagcct gggcgatcgc gtgaccatta
gctgcagcgc gagccagggc 960attaacaact atctgaactg gtatcagcag
aaaccggatg gcaccgtgga actgctgatt 1020tattatacca gcaccctgca
gagcggcgtg ccgagccgct ttagcggcag cggcagcggc 1080accgattata
gcctgaccat tagcaacctg gaaccggaag atattggcac ctattattgc
1140cagcagtata gcaaactgcc gcgcaccttt ggcggcggca ccaaactgga
aattaaacgc 1200accgtgcatc atcaccatca tcattag
12271431212DNAArtificial SequenceNucleotide sequence encoding
pelB-(aHis)VH- scFvHLA-A2(VH-VL)-myc 143atgaaatacc tgctgccgac
cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggcccagg tgcagctgca
gcagagcggc ccggaagatg tgaaaccggg cgcgagcgtg 120aaaattagct
gcaaagcgag cggctatacc tttaccgatt attatatgaa ctgggtgaaa
180cagagcccgg gcaaaggcct ggaatggatt ggcgatatta acccgaacaa
cggcggcacc 240agctataacc agaaatttaa aggccgcgcg accctgaccg
tggataaaag cagcagcacc 300gcgtatatgg aactgcgcag cctgaccagc
gaagatagca gcgtgtatta ttgcgaaagc 360cagagcggcg cgtattgggg
ccagggcacc accgtgaccg tgagcgcggg cggcggcggc 420agcggcggcg
gcggcagcgg cggccaggtg cagctggtgc agtctggggg aggcgtggtc
480cagcctgggg ggtccctgag agtctcctgt gcagcgtctg gggtcaccct
cagtgattat 540ggcatgcatt gggtccgcca ggctccaggc aaggggctgg
agtggatggc ttttatacgg 600aatgatggaa gtgataaata ttatgcagac
tccgtgaagg gccgattcac catctccaga 660gacaactcca agaaaacagt
gtctctgcaa atgagcagtc tcagagctga agacacggct 720gtgtattact
gtgcgaaaaa tggcgaatct gggcctttgg actactggta cttcgatctc
780tggggccgtg gcaccctggt caccgtgtcg agtggtggag gcggttcagg
cggaggtggc 840tctggcggtg gcggatcgga tgttgtgatg actcagtctc
catcctccct gtctgcatct 900gtaggagaca gagtcaccat cacttgccag
gcgagtcagg acattagcaa ctatttaaat 960tggtatcagc agaaaccagg
gaaagcccct aagctcctga tctacgatgc atccaatttg 1020gaaacagggg
tcccatcaag gttcagtgga agtggatctg ggacagattt tactttcacc
1080atcagcagcc tgcagcctga ggattttgca acttattact gccaacaata
tagtagtttt 1140ccgctcactt tcggcggagg gaccaaagtg gatatcaaac
gtgaacaaaa actcatctca 1200gaagaggatc tg 12121441230DNAArtificial
SequenceNucleotide sequence encoding pelB-(aHis)VL-
scFvCD45(VL-VH)-myc 144atgaaatacc tgctgccgac cgctgctgct ggtctgctgc
tcctcgctgc ccagccggcg 60atggccgatt ataaagatat tctgatgacc cagaccccga
gcagcctgcc ggtgagcctg 120ggcgatcagg cgagcattag ctgccgcagc
agccagagca ttgtgcatag caacggcaac 180acctatctgg aatggtatct
gcagaaaccg ggccagagcc cgaaactgct gatttataaa 240gtgagcaacc
gctttagcgg cgtgccggat cgctttagcg gcagcggcag cggcaccgat
300tttaccctga aaattagccg cgtggaagcg gaagatctgg gcgtgtatta
ttgctttcag 360ggcagccatg tgccgtttac ctttggcagc ggcaccaaac
tggaaattaa acgcggcggc 420ggcggcagcg gcggcggcgg cagcggcggc
gatattgttc tgacccagag cccggcgagc 480ctggcggtta gcctgggtca
gcgtgccacc attagctgcc gtgcgagcaa aagcgtgagc 540accagcggct
atagctatct gcattggtat cagcagaaac cgggccagcc tccaaaactg
600ctgatttatc tggccagcaa cctggaaagc ggtgtgccgg cccgttttag
cggcagcggc 660agcggtaccg attttaccct gaacattcat ccggtggaag
aagaagatgc ggcgacctat 720tattgccagc atagccgtga actgccgttt
acctttggca gcggcaccaa actggaaatt 780aaaaagatct ctggtggcgg
cggctcgggt ggtggtgggt cgggcggcgg cggctcgagc 840caggtgcagc
tggtggaaag cggtggcgga ctggtgcagc cgggcggcag cctgaaactg
900agctgtgccg ccagcggttt tgattttagc cgttattgga tgagctgggt
gcgtcaggcg 960ccgggcaaag gcctggaatg gattggcgaa attaacccga
ccagcagcac cattaacttt 1020accccgagcc tgaaagataa agtgtttatt
agccgtgata acgcgaaaaa caccctgtat 1080ctgcagatga gcaaagtgcg
tagcgaagat accgcgctgt attattgcgc gcgtggcaac 1140tattatcgtt
atggcgatgc gatggattat tggggccagg gcaccagcgt gaccgtgagc
1200gaacaaaaac tcatctcaga agaggatctg 12301451248DNAArtificial
SequenceNucleotide sequence encoding
pelB-(aCD3)VH-scFvHLA-A2(VH-VL)-myc-6His 145atgaaatacc tgctgccgac
cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggccgata tcaaactgca
gcagtcaggg gctgaactgg caagacctgg ggcctcagtg 120aagatgtcct
gcaagacttc tggctacacc tttactaggt acacgatgca ctgggtaaaa
180cagaggcctg gacagggtct ggaatggatt ggatacatta atcctagccg
tggttatact 240aattacaatc agaagttcaa ggacaaggcc acattgacta
cagacaaatc ctccagcaca 300gcctacatgc aactgagcag cctgacatct
gaggactctg cagtctatta ctgtgcaaga 360tattatgatg atcattactg
ccttgactac tggggccaag gcaccactct cacagtctcc 420tcaggcggcg
gcggcagcgg cggcggcggc agcggcggcc aggtgcagct ggtgcagtct
480gggggaggcg tggtccagcc tggggggtcc ctgagagtct cctgtgcagc
gtctggggtc 540accctcagtg attatggcat gcattgggtc cgccaggctc
caggcaaggg gctggagtgg 600atggctttta tacggaatga tggaagtgat
aaatattatg cagactccgt gaagggccga 660ttcaccatct ccagagacaa
ctccaagaaa acagtgtctc tgcaaatgag cagtctcaga 720gctgaagaca
cggctgtgta ttactgtgcg aaaaatggcg aatctgggcc tttggactac
780tggtacttcg atctctgggg ccgtggcacc ctggtcaccg tgtcgagtgg
tggaggcggt 840tcaggcggag gtggctctgg cggtggcgga tcggatgttg
tgatgactca gtctccatcc 900tccctgtctg catctgtagg agacagagtc
accatcactt gccaggcgag tcaggacatt 960agcaactatt taaattggta
tcagcagaaa ccagggaaag cccctaagct cctgatctac 1020gatgcatcca
atttggaaac aggggtccca tcaaggttca gtggaagtgg atctgggaca
1080gattttactt tcaccatcag cagcctgcag cctgaggatt ttgcaactta
ttactgccaa 1140caatatagta gttttccgct cactttcggc ggagggacca
aagtggatat caaacgtgaa 1200caaaaactca tctcagaaga ggatctgcat
catcaccatc atcattag 12481461221DNAArtificial SequenceNucleotide
sequence encoding pelB-(aCD3)VL-scFvCD45(VL-VH)-myc-6His
146atgaaatacc tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc
ccagccggcg 60atggccgaca ttcagctgac ccagtctcca gcaatcatgt ctgcatctcc
aggggagaag 120gtcaccatga cctgcagagc cagttcaagt gtaagttaca
tgaactggta ccagcagaag 180tcaggcacct cccccaaaag atggatttat
gacacatcca aagtggcttc tggagtccct 240tatcgcttca gtggcagtgg
gtctgggacc tcatactctc tcacaatcag cagcatggag 300gctgaagatg
ctgccactta ttactgccaa cagtggagta gtaacccgct cacgttcggt
360gctgggacca agctggagct gaaaggcggc ggcggcagcg gcggcggcgg
cagcggcggc 420gatattgttc tgacccagag cccggcgagc ctggcggtta
gcctgggtca gcgtgccacc 480attagctgcc gtgcgagcaa aagcgtgagc
accagcggct atagctatct gcattggtat 540cagcagaaac cgggccagcc
tccaaaactg ctgatttatc tggccagcaa cctggaaagc 600ggtgtgccgg
cccgttttag cggcagcggc agcggtaccg attttaccct gaacattcat
660ccggtggaag aagaagatgc ggcgacctat tattgccagc atagccgtga
actgccgttt 720acctttggca gcggcaccaa actggaaatt aaaaagatct
ctggtggcgg cggctcgggt 780ggtggtgggt cgggcggcgg cggctcgagc
caggtgcagc tggtggaaag cggtggcgga 840ctggtgcagc cgggcggcag
cctgaaactg agctgtgccg ccagcggttt tgattttagc 900cgttattgga
tgagctgggt gcgtcaggcg ccgggcaaag gcctggaatg gattggcgaa
960attaacccga ccagcagcac cattaacttt accccgagcc tgaaagataa
agtgtttatt 1020agccgtgata acgcgaaaaa caccctgtat ctgcagatga
gcaaagtgcg tagcgaagat 1080accgcgctgt attattgcgc gcgtggcaac
tattatcgtt atggcgatgc gatggattat 1140tggggccagg gcaccagcgt
gaccgtgagc gaacaaaaac tcatctcaga agaggatctg 1200catcatcacc
atcatcatta g 12211471248DNAArtificial SequenceNucleotide sequence
encoding pelB-VHaDIG- scFvEGFR-FLAG-6HIS 147atgaaatacc tgctgccgac
cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggccgaag tgcagctggt
ggaaagcggc ggcggcctgg tgaaaccggg cggcagcctg 120aaactgagct
gcgcggtgag cggctttacc tttagcgatt atgcgatgag ctggattcgc
180cagaccccgg aaaaccgcct ggaatgggtg gcgagcatta acattggcgc
gacctatgcg 240tattatccgg atagcgtgaa aggccgcttt accattagcc
gcgataacgc gaaaaacacc 300ctgtttctgc agatgagcag cctgggcagc
gaagataccg cgatgtatta ttgcgcgcgc 360ccgggcagcc cgtatgaata
tgataaagcg tattatagca tggcgtattg gggcccgggc 420accagcgtga
ccgtgagcag cgcgaaaacc ggtggtggtg gttctggcgg cggcggctcc
480caggtgcagc tgcaggagtc gggcccagga ctggtgaagc cttcggagac
cctgtccctc 540acctgcactg tctctggtgg ctccgtcagc agtggtgatt
actactggac ctggatccgg 600cagtccccag ggaagggact ggagtggatt
ggacacatct attacagtgg gaacaccaat 660tataacccct ccctcaagag
ccgactcacc atatcaattg acacgtccaa gactcagttc 720tccctgaagc
tgagttctgt gaccgctgcg gacacggcca tttattactg tgtgcgagat
780cgagtgactg gtgcttttga tatctggggc caagggacaa tggtcaccgt
ctcttccggt 840ggtggtggtt ctggcggcgg cggctccggt ggtggtggtt
ctgacatcca gatgacccag 900tctccatcct ccctgtctgc atctgtcgga
gacagagtca ccatcacttg ccaggcgagt 960caggacatca gcaactattt
aaattggtat cagcagaaac cagggaaagc ccctaaactc 1020ctgatctacg
atgcatccaa tttggaaaca ggggtcccat caaggttcag tggaagtgga
1080tctgggacag attttacttt caccatcagc agcctgcagc ctgaagatat
tgcaacatat 1140ttctgtcaac actttgatca tctcccgctc gctttcggcg
gagggaccaa ggtggagatc 1200aaagactaca aggatgacga tgacaaacat
catcaccatc atcattag 12481481239DNAArtificial SequenceNucleotide
sequence encoding pelB-VLaDIG- scFvEpCAM-myc-6HIS 148atgaaatacc
tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggccgatg
tgcagatgac ccagagcacc agcagcctga gcgcgagcct gggcgatcgc
120gtgaccatta gctgccgcgc gagccaggat attaaaaact atctgaactg
gtatcagcag 180aaaccgggcg gcaccgtgaa actgctgatt tattatagca
gcaccctgct gagcggcgtg 240ccgagccgct ttagcggccg cggcagcggc
accgatttta gcctgaccat taccaacctg 300gaacgcgaag atattgcgac
ctatttttgc cagcagagca ttaccctgcc gccgaccttt 360ggcggcggca
ccaaactgga aattaaacgc gcggatgcgg cgccgaccgt gagcattttt
420ggtggttccg gaggtggtgg atccgaggtg cagctgctcg agcagtctgg
agctgagctg 480gtaaggcctg ggacttcagt gaagatatcc tgcaaggctt
ctggatacgc cttcactaac 540tactggctag gttgggtaaa gcagaggcct
ggacatggac ttgagtggat tggagatatt 600ttccctggaa gtggtaatat
ccactacaat gagaagttca agggcaaagc cacactgact 660gcagacaaat
cttcgagcac agcctatatg cagctcagta gcctgacatt tgaggactct
720gctgtctatt tctgtgcaag actgaggaac tgggacgagc ctatggacta
ctggggccaa 780gggaccacgg tcaccgtctc ctcaggtggt ggtggttctg
gcggcggcgg ctccggtggt 840ggtggttctg agctcgtgat gacacagtct
ccatcctccc tgactgtgac agcaggagag 900aaggtcacta tgagctgcaa
gtccagtcag agtctgttaa acagtggaaa tcaaaagaac 960tacttgacct
ggtaccagca gaaaccaggg cagcctccta aactgttgat ctactgggca
1020tccactaggg aatctggggt ccctgatcgc ttcacaggca gtggatctgg
aacagatttc 1080actctcacca tcagcagtgt gcaggctgaa gacctggcag
tttattactg tcagaatgat 1140tatagttatc cgctcacgtt cggtgctggg
accaagcttg agatcaaaga acagaaactg 1200atctctgaag aagacctgca
tcatcaccat catcattag 12391491203DNAArtificial SequenceNucleotide
sequence encoding pelB-murineCD3VH- scFvEpCaAM-6His 149atgaaatatc
tgctgccgac cgcggcggcg ggcctgctgc tgctggcggc gcagccggcg 60atggcggaag
tgcagctggt ggaaagcggc ggcggcctgg tgcagccggg caaaagcctg
120aaactgagct gcgaagcgag cggctttacc tttagcggct atggcatgca
ttgggtgcgc 180caggcgccgg gccgcggcct ggaaagcgtg gcgtatatta
ccagcagcag cattaacatt 240aaatatgcgg atgcggtgaa aggccgcttt
accgtgagcc gcgataacgc gaaaaacctg 300ctgtttctgc agatgaacat
tctgaaaagc gaagataccg cgatgtatta ttgcgcgcgc 360tttgattggg
ataaaaacta ttggggccag ggcaccatgg tgaccgtgag cagcgcgaaa
420accagcagcg gcggcggcga ggtgcagctg ctcgagcagt ctggagctga
gctggtaagg 480cctgggactt cagtgaagat atcctgcaag gcttctggat
acgccttcac taactactgg 540ctaggttggg taaagcagag gcctggacat
ggacttgagt ggattggaga tattttccct 600ggaagtggta atatccacta
caatgagaag ttcaagggca aagccacact gactgcagac 660aaatcttcga
gcacagccta tatgcagctc agtagcctga catttgagga ctctgctgtc
720tatttctgtg caagactgag gaactgggac gagcctatgg actactgggg
ccaagggacc 780acggtcaccg tctcctcagg tggtggtggt tctggcggcg
gcggctccgg tggtggtggt 840tctgagctcg tgatgacaca gtctccatcc
tccctgactg tgacagcagg agagaaggtc 900actatgagct gcaagtccag
tcagagtctg ttaaacagtg gaaatcaaaa gaactacttg 960acctggtacc
agcagaaacc agggcagcct cctaaactgt tgatctactg ggcatccact
1020agggaatctg gggtccctga tcgcttcaca ggcagtggat ctggaacaga
tttcactctc 1080accatcagca gtgtgcaggc tgaagacctg gcagtttatt
actgtcagaa tgattatagt 1140tatccgctca cgttcggtgc tgggaccaag
cttgagatca aacatcatca ccatcatcat 1200tag 12031501155DNAArtificial
SequenceNucleotide sequence encoding
pelB-murineCD3VL- scFvEGFR-6His 150atgaaatatc tgctgccgac cgcggcggcg
ggcctgctgc tgctggcggc gcagccggcg 60atggcggata ttcagatgac ccagagcccg
agcagcctgc cggcgagcct gggcgatcgc 120gtgaccatta actgccaggc
gagccaggat attagcaact atctgaactg gtatcagcag 180aaaccgggca
aagcgccgaa actgctgatt tattatacca acaaactggc ggatggcgtg
240ccgagccgct ttagcggcag cggcagcggc cgcgatagca gctttaccat
tagcagcctg 300gaaagcgaag atattggcag ctattattgc cagcagtatt
ataactatcc gtggaccttt 360ggcccgggca ccaaactgga aattaaacgc
gcggatagca gcggcggcgg ccaggtgcag 420ctgcaggagt cgggcccagg
actggtgaag ccttcggaga ccctgtccct cacctgcact 480gtctctggtg
gctccgtcag cagtggtgat tactactgga cctggatccg gcagtcccca
540gggaagggac tggagtggat tggacacatc tattacagtg ggaacaccaa
ttataacccc 600tccctcaaga gccgactcac catatcaatt gacacgtcca
agactcagtt ctccctgaag 660ctgagttctg tgaccgctgc ggacacggcc
atttattact gtgtgcgaga tcgagtgact 720ggtgcttttg atatctgggg
ccaagggaca atggtcaccg tctcttccgg tggtggtggt 780tctggcggcg
gcggctccgg tggtggtggt tctgacatcc agatgaccca gtctccatcc
840tccctgtctg catctgtcgg agacagagtc accatcactt gccaggcgag
tcaggacatc 900agcaactatt taaattggta tcagcagaaa ccagggaaag
cccctaaact cctgatctac 960gatgcatcca atttggaaac aggggtccca
tcaaggttca gtggaagtgg atctgggaca 1020gattttactt tcaccatcag
cagcctgcag cctgaagata ttgcaacata tttctgtcaa 1080cactttgatc
atctcccgct cgctttcggc ggagggacca aggtggagat caaacatcat
1140caccatcatc attag 11551511677DNAArtificial SequenceNucleotide
sequence encoding pelB-ta (DIG*EpCAM)-Myc-6HIS 151atgaaatacc
tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc ccagccggcg 60atggccgaag
tgcagctggt ggaaagcggc ggcggcctgg tgaaaccggg cggcagcctg
120aaactgagct gcgcggtgag cggctttacc tttagcgatt atgcgatgag
ctggattcgc 180cagaccccgg aaaaccgcct ggaatgggtg gcgagcatta
acattggcgc gacctatgcg 240tattatccgg atagcgtgaa aggccgcttt
accattagcc gcgataacgc gaaaaacacc 300ctgtttctgc agatgagcag
cctgggcagc gaagataccg cgatgtatta ttgcgcgcgc 360ccgggcagcc
cgtatgaata tgataaagcg tattatagca tggcgtattg gggcccgggc
420accagcgtga ccgtgagcag cgcgaaaacc tcctcaggtg gtggtggttc
tggcggcggc 480ggctccggtg gtggtggttc tggtgatgtg cagatgaccc
agagcaccag cagcctgagc 540gcgagcctgg gcgatcgcgt gaccattagc
tgccgcgcga gccaggatat taaaaactat 600ctgaactggt atcagcagaa
accgggcggc accgtgaaac tgctgattta ttatagcagc 660accctgctga
gcggcgtgcc gagccgcttt agcggccgcg gcagcggcac cgattttagc
720ctgaccatta ccaacctgga acgcgaagat attgcgacct atttttgcca
gcagagcatt 780accctgccgc cgacctttgg cggcggcacc aaactggaaa
ttaaacgcgc ggatgcggcg 840ccgaccgtga gcatttttgg tggttccgga
ggtggtggat ccgaggtgca gctgctcgag 900cagtctggag ctgagctggt
aaggcctggg acttcagtga agatatcctg caaggcttct 960ggatacgcct
tcactaacta ctggctaggt tgggtaaagc agaggcctgg acatggactt
1020gagtggattg gagatatttt ccctggaagt ggtaatatcc actacaatga
gaagttcaag 1080ggcaaagcca cactgactgc agacaaatct tcgagcacag
cctatatgca gctcagtagc 1140ctgacatttg aggactctgc tgtctatttc
tgtgcaagac tgaggaactg ggacgagcct 1200atggactact ggggccaagg
gaccacggtc accgtctcct caggtggtgg tggttctggc 1260ggcggcggct
ccggtggtgg tggttctgag ctcgtgatga cacagtctcc atcctccctg
1320actgtgacag caggagagaa ggtcactatg agctgcaagt ccagtcagag
tctgttaaac 1380agtggaaatc aaaagaacta cttgacctgg taccagcaga
aaccagggca gcctcctaaa 1440ctgttgatct actgggcatc cactagggaa
tctggggtcc ctgatcgctt cacaggcagt 1500ggatctggaa cagatttcac
tctcaccatc agcagtgtgc aggctgaaga cctggcagtt 1560tattactgtc
agaatgatta tagttatccg ctcacgttcg gtgctgggac caagcttgag
1620atcaaagaac agaaactgat ctctgaagaa gacctgcatc atcaccatca tcattag
1677152124PRTArtificial SequenceAnti-CD19 VH 152Gln Val Gln Leu Gln
Gln Ser Gly Ala Glu Leu Val Arg Pro Gly Ser1 5 10 15Ser Val Lys Ile
Ser Cys Lys Ala Ser Gly Tyr Ala Phe Ser Ser Tyr 20 25 30Trp Met Asn
Trp Val Lys Gln Arg Pro Gly Gln Gly Leu Glu Trp Ile 35 40 45Gly Gln
Ile Trp Pro Gly Asp Gly Asp Thr Asn Tyr Asn Gly Lys Phe 50 55 60Lys
Gly Lys Ala Thr Leu Thr Ala Asp Glu Ser Ser Ser Thr Ala Tyr65 70 75
80Met Gln Leu Ser Ser Leu Ala Ser Glu Asp Ser Ala Val Tyr Phe Cys
85 90 95Ala Arg Arg Glu Thr Thr Thr Val Gly Arg Tyr Tyr Tyr Ala Met
Asp 100 105 110Tyr Trp Gly Gln Gly Thr Thr Val Thr Val Ser Ser 115
120153112PRTArtificial SequenceAnti-CD19 VL 153Asp Ile Gln Leu Thr
Gln Ser Pro Ala Ser Leu Ala Val Ser Leu Gly1 5 10 15Gln Arg Ala Thr
Ile Ser Cys Lys Ala Ser Gln Ser Val Asp Tyr Asp 20 25 30Gly Asp Ser
Tyr Leu Asn Trp Tyr Gln Gln Ile Pro Gly Gln Pro Pro 35 40 45Lys Leu
Leu Ile Tyr Asp Ala Ser Asn Leu Val Ser Gly Ile Pro Pro 50 55 60Arg
Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Asn Ile His65 70 75
80Pro Val Glu Lys Val Asp Ala Ala Thr Tyr His Cys Gln Gln Ser Thr
85 90 95Glu Asp Pro Trp Thr Phe Gly Gly Gly Thr Lys Leu Glu Ile Lys
Ser 100 105 110154251PRTArtificial SequencescFv anti CD19
(VH-linker-VL) 154Gln Val Gln Leu Gln Gln Ser Gly Ala Glu Leu Val
Arg Pro Gly Ser1 5 10 15Ser Val Lys Ile Ser Cys Lys Ala Ser Gly Tyr
Ala Phe Ser Ser Tyr 20 25 30Trp Met Asn Trp Val Lys Gln Arg Pro Gly
Gln Gly Leu Glu Trp Ile 35 40 45Gly Gln Ile Trp Pro Gly Asp Gly Asp
Thr Asn Tyr Asn Gly Lys Phe 50 55 60Lys Gly Lys Ala Thr Leu Thr Ala
Asp Glu Ser Ser Ser Thr Ala Tyr65 70 75 80Met Gln Leu Ser Ser Leu
Ala Ser Glu Asp Ser Ala Val Tyr Phe Cys 85 90 95Ala Arg Arg Glu Thr
Thr Thr Val Gly Arg Tyr Tyr Tyr Ala Met Asp 100 105 110Tyr Trp Gly
Gln Gly Thr Thr Val Thr Val Ser Ser Gly Gly Gly Gly 115 120 125Ser
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Asp Ile Gln Leu Thr 130 135
140Gln Ser Pro Ala Ser Leu Ala Val Ser Leu Gly Gln Arg Ala Thr
Ile145 150 155 160Ser Cys Lys Ala Ser Gln Ser Val Asp Tyr Asp Gly
Asp Ser Tyr Leu 165 170 175Asn Trp Tyr Gln Gln Ile Pro Gly Gln Pro
Pro Lys Leu Leu Ile Tyr 180 185 190Asp Ala Ser Asn Leu Val Ser Gly
Ile Pro Pro Arg Phe Ser Gly Ser 195 200 205Gly Ser Gly Thr Asp Phe
Thr Leu Asn Ile His Pro Val Glu Lys Val 210 215 220Asp Ala Ala Thr
Tyr His Cys Gln Gln Ser Thr Glu Asp Pro Trp Thr225 230 235 240Phe
Gly Gly Gly Thr Lys Leu Glu Ile Lys Ser 245 2501558PRTArtificial
SequenceAnti-CD19 VH CDR1 155Gly Tyr Ala Phe Ser Ser Tyr Trp1
51568PRTArtificial SequenceAnti-CD19 VH CDR2 156Ile Trp Pro Gly Asp
Gly Asp Thr1 515717PRTArtificial SequenceAnti-CD19 VH CDR3 157Ala
Arg Arg Glu Thr Thr Thr Val Gly Arg Tyr Tyr Tyr Ala Met Asp1 5 10
15Tyr15810PRTArtificial SequenceAnti-CD19 VL CDR1 158Gln Ser Val
Asp Tyr Asp Gly Asp Ser Tyr1 5 101599PRTArtificial
SequenceAnti-CD19 VL CDR3 159Gln Gln Ser Thr Glu Asp Pro Trp Thr1
5160451PRTArtificial SequenceClostridium perfringens Iota toxin
component Ia (a.a.23-454) 6x histidine tag two protease cleavage
sites 160Met Ala Ser Thr Thr His His His His His His Asp Thr Asp
Ile Pro1 5 10 15Thr Thr Gly Gly Gly Ser Arg Pro Asp Asp Asp Asp Lys
Glu Asn Leu 20 25 30Tyr Phe Gln Gly His Met Ala Phe Ile Glu Arg Pro
Glu Asp Phe Leu 35 40 45Lys Asp Lys Glu Asn Ala Ile Gln Trp Glu Lys
Lys Glu Ala Glu Arg 50 55 60Val Glu Lys Asn Leu Asp Thr Leu Glu Lys
Glu Ala Leu Glu Leu Tyr65 70 75 80Lys Lys Asp Ser Glu Gln Ile Ser
Asn Tyr Ser Gln Thr Arg Gln Tyr 85 90 95Phe Tyr Asp Tyr Gln Ile Glu
Ser Asn Pro Arg Glu Lys Glu Tyr Lys 100 105 110Asn Leu Arg Asn Ala
Ile Ser Lys Asn Lys Ile Asp Lys Pro Ile Asn 115 120 125Val Tyr Tyr
Phe Glu Ser Pro Glu Lys Phe Ala Phe Asn Lys Glu Ile 130 135 140Arg
Thr Glu Asn Gln Asn Glu Ile Ser Leu Glu Lys Phe Asn Glu Leu145 150
155 160Lys Glu Thr Ile Gln Asp Lys Leu Phe Lys Gln Asp Gly Phe Lys
Asp 165 170 175Val Ser Leu Tyr Glu Pro Gly Asn Gly Asp Glu Lys Pro
Thr Pro Leu 180 185 190Leu Ile His Leu Lys Leu Pro Lys Asn Thr Gly
Met Leu Pro Tyr Ile 195 200 205Asn Ser Asn Asp Val Lys Thr Leu Ile
Glu Gln Asp Tyr Ser Ile Lys 210 215 220Ile Asp Lys Ile Val Arg Ile
Val Ile Glu Gly Lys Gln Tyr Ile Lys225 230 235 240Ala Glu Ala Ser
Ile Val Asn Ser Leu Asp Phe Lys Asp Asp Val Ser 245 250 255Lys Gly
Asp Leu Trp Gly Lys Glu Asn Tyr Ser Asp Trp Ser Asn Lys 260 265
270Leu Thr Pro Asn Glu Leu Ala Asp Val Asn Asp Tyr Met Arg Gly Gly
275 280 285Tyr Thr Ala Ile Asn Asn Tyr Leu Ile Ser Asn Gly Pro Leu
Asn Asn 290 295 300Pro Asn Pro Glu Leu Asp Ser Lys Val Asn Asn Ile
Glu Asn Ala Leu305 310 315 320Lys Leu Thr Pro Ile Pro Ser Asn Leu
Ile Val Tyr Arg Arg Ser Gly 325 330 335Pro Gln Glu Phe Gly Leu Thr
Leu Thr Ser Pro Glu Tyr Asp Phe Asn 340 345 350Lys Ile Glu Asn Ile
Asp Ala Phe Lys Glu Lys Trp Glu Gly Lys Val 355 360 365Ile Thr Tyr
Pro Asn Phe Ile Ser Thr Ser Ile Gly Ser Val Asn Met 370 375 380Ser
Ala Phe Ala Lys Arg Lys Ile Ile Leu Arg Ile Asn Ile Pro Lys385 390
395 400Asp Ser Pro Gly Ala Tyr Leu Ser Ala Ile Pro Gly Tyr Ala Gly
Glu 405 410 415Tyr Glu Val Leu Leu Asn His Gly Ser Lys Phe Lys Ile
Asn Lys Val 420 425 430Asp Ser Tyr Lys Asp Gly Thr Val Thr Lys Leu
Ile Leu Asp Ala Thr 435 440 445Leu Ile Asn 450161300PRTArtificial
SequenceBurkholderia sp. CCGE1002 Shiga toxin subunit A
(a.a.24-285) 6x histidine tag two protease cleavage sites 161Met
Ala Ser Thr Thr His His His His His His Asp Thr Asp Ile Pro1 5 10
15Thr Thr Gly Gly Gly Ser Arg Pro Asp Asp Asp Asp Lys Glu Asn Leu
20 25 30Tyr Phe Gln Gly His Met Glu Phe Ser Val Asp Phe Thr Ser Pro
Gln 35 40 45Lys Tyr Val Gln Ser Leu Gly Ala Ile Arg Ala Ala Met Gly
Asp Ala 50 55 60Met Ser Leu Thr Asn Ile Pro Gly Asn Lys Ile Leu Tyr
Gln Leu Arg65 70 75 80Pro Asp Ala Ser Asn Ile Val Glu Gly Val Thr
Ile Glu Ile Ile Gly 85 90 95Val Gly Arg Asn Asn Ser Pro Ser Asn Arg
Asp Val Arg Phe Val Ile 100 105 110Asn Pro Ser Asp Leu Tyr Leu Thr
Gly Phe Ile Val Gly Arg Ile Phe 115 120 125Tyr Arg Phe Ser Asp Phe
Ser Asp Thr Ala Ser Gly Arg Val Gln Val 130 135 140Asn Ala Pro Arg
His Leu Val Asp Phe Thr Ile Asp Met Thr Val Asp145 150 155 160Ser
Ser Tyr Leu Ser Leu Ala Arg Ser Ala Gly Val Ser Ala Asp Arg 165 170
175Thr Asp Leu Ser Ile Asp Arg Tyr Ser Leu Met Lys Gly Tyr Arg Asp
180 185 190Leu Ile Asn His Val Ser Ser Thr Arg Thr Ile Asn Gly Ala
Glu Ala 195 200 205Arg Ala Leu Leu Ser Tyr Ala Thr Val Leu Ser Glu
Ala Val Arg Phe 210 215 220Arg Ser Ile Gln Gly Asn Phe Ala Ser Thr
Ala Leu Gly Asp Asp Ala225 230 235 240Phe Thr Pro Tyr Arg Leu Ser
Leu Glu Asp Ser Asn Arg Thr Thr Arg 245 250 255Trp Asp Arg Leu Ser
Asp Glu Ile Arg Lys Ala His Tyr Gly Ala Ile 260 265 270Lys Ile Ala
Thr His Gly Ala Ala Pro Ile Leu Leu Ala Asn Val Arg 275 280 285Asp
Val Phe Gly Met Thr Thr Cys Thr Ser Lys Lys 290 295
300162521PRTArtificial SequenceAnthrax lethal factor endopeptidase
no PA- binding region (34-295) 6x histidine tag 162Gln Arg Met Leu
Ala Arg Tyr Glu Lys Trp Glu Lys Ile Lys Gln His1 5 10 15Tyr Gln His
Trp Ser Asp Ser Leu Ser Glu Glu Gly Arg Gly Leu Leu 20 25 30Lys Lys
Leu Gln Ile Pro Ile Glu Pro Lys Lys Asp Asp Ile Ile His 35 40 45Ser
Leu Ser Gln Glu Glu Lys Glu Leu Leu Lys Arg Ile Gln Ile Asp 50 55
60Ser Ser Asp Phe Leu Ser Thr Glu Glu Lys Glu Phe Leu Lys Lys Leu65
70 75 80Gln Ile Asp Ile Arg Asp Ser Leu Ser Glu Glu Glu Lys Glu Leu
Leu 85 90 95Asn Arg Ile Gln Val Asp Ser Ser Asn Pro Leu Ser Glu Lys
Glu Lys 100 105 110Glu Phe Leu Lys Lys Leu Lys Leu Asp Ile Gln Pro
Tyr Asp Ile Asn 115 120 125Gln Arg Leu Gln Asp Thr Gly Gly Leu Ile
Asp Ser Pro Ser Ile Asn 130 135 140Leu Asp Val Arg Lys Gln Tyr Lys
Arg Asp Ile Gln Asn Ile Asp Ala145 150 155 160Leu Leu His Gln Ser
Ile Gly Ser Thr Leu Tyr Asn Lys Ile Tyr Leu 165 170 175Tyr Glu Asn
Met Asn Ile Asn Asn Leu Thr Ala Thr Leu Gly Ala Asp 180 185 190Leu
Val Asp Ser Thr Asp Asn Thr Lys Ile Asn Arg Gly Ile Phe Asn 195 200
205Glu Phe Lys Lys Asn Phe Lys Tyr Ser Ile Ser Ser Asn Tyr Met Ile
210 215 220Val Asp Ile Asn Glu Arg Pro Ala Leu Asp Asn Glu Arg Leu
Lys Trp225 230 235 240Arg Ile Gln Leu Ser Pro Asp Thr Arg Ala Gly
Tyr Leu Glu Asn Gly 245 250 255Lys Leu Ile Leu Gln Arg Asn Ile Gly
Leu Glu Ile Lys Asp Val Gln 260 265 270Ile Ile Lys Gln Ser Glu Lys
Glu Tyr Ile Arg Ile Asp Ala Lys Val 275 280 285Val Pro Lys Ser Lys
Ile Asp Thr Lys Ile Gln Glu Ala Gln Leu Asn 290 295 300Ile Asn Gln
Glu Trp Asn Lys Ala Leu Gly Leu Pro Lys Tyr Thr Lys305 310 315
320Leu Ile Thr Phe Asn Val His Asn Arg Tyr Ala Ser Asn Ile Val Glu
325 330 335Ser Ala Tyr Leu Ile Leu Asn Glu Trp Lys Asn Asn Ile Gln
Ser Asp 340 345 350Leu Ile Lys Lys Val Thr Asn Tyr Leu Val Asp Gly
Asn Gly Arg Phe 355 360 365Val Phe Thr Asp Ile Thr Leu Pro Asn Ile
Ala Glu Gln Tyr Thr His 370 375 380Gln Asp Glu Ile Tyr Glu Gln Val
His Ser Lys Gly Leu Tyr Val Pro385 390 395 400Glu Ser Arg Ser Ile
Leu Leu His Gly Pro Ser Lys Gly Val Glu Leu 405 410 415Arg Asn Asp
Ser Glu Gly Phe Ile His Glu Phe Gly His Ala Val Asp 420 425 430Asp
Tyr Ala Gly Tyr Leu Leu Asp Lys Asn Gln Ser Asp Leu Val Thr 435 440
445Asn Ser Lys Lys Phe Ile Asp Ile Phe Lys Glu Glu Gly Ser Asn Leu
450 455 460Thr Ser Tyr Gly Arg Thr Asn Glu Ala Glu Phe Phe Ala Glu
Ala Phe465 470 475 480Arg Leu Met His Ser Thr Asp His Ala Glu Arg
Leu Lys Val Gln Lys 485 490 495Asn Ala Pro Lys Thr Phe Gln Phe Ile
Asn Asp Gln Ile Lys Phe Ile 500 505 510Ile Asn Ser His His His His
His His 515 520163389PRTArtificial SequenceCorynebacterium
diphtheria toxin 6x histidine tag 163Met Gly Ala Asp Asp Val Val
Asp Ser Ser Lys Ser Phe Val Met Glu1 5 10 15Asn Phe Ser Ser Tyr His
Gly Thr Lys Pro Gly Tyr Val Asp Ser Ile 20 25 30Gln Lys Gly Ile Gln
Lys Pro Lys Ser Gly Thr Gln Gly Asn Tyr Asp 35 40 45Asp Asp Trp Lys
Gly
Phe Tyr Ser Thr Asp Asn Lys Tyr Asp Ala Ala 50 55 60Gly Tyr Ser Val
Asp Asn Glu Asn Pro Leu Ser Gly Lys Ala Gly Gly65 70 75 80Val Val
Lys Val Thr Tyr Pro Gly Leu Thr Lys Val Leu Ala Leu Lys 85 90 95Val
Asp Asn Ala Glu Thr Phe Lys Lys Glu Leu Gly Leu Ser Leu Thr 100 105
110Glu Pro Leu Met Glu Gln Val Gly Thr Glu Glu Phe Ile Lys Arg Phe
115 120 125Gly Asp Gly Ala Ser Arg Val Val Leu Ser Leu Pro Phe Ala
Glu Gly 130 135 140Ser Ser Ser Val Glu Tyr Ile Asn Asn Trp Glu Gln
Ala Lys Ala Leu145 150 155 160Ser Val Glu Leu Glu Ile Asn Phe Glu
Thr Arg Gly Lys Arg Gly Gln 165 170 175Asp Ala Met Tyr Glu Tyr Met
Ala Gln Ala Cys Ala Gly Asn Arg Val 180 185 190Arg Arg Ser Val Gly
Ser Ser Leu Ser Cys Ile Asn Leu Asp Trp Asp 195 200 205Val Ile Arg
Asp Lys Thr Lys Thr Lys Ile Glu Ser Leu Lys Glu His 210 215 220Gly
Pro Ile Lys Asn Lys Met Ser Glu Ser Pro Asn Lys Thr Val Ser225 230
235 240Glu Glu Lys Ala Lys Gln Tyr Leu Glu Glu Phe His Gln Thr Ala
Leu 245 250 255Glu His Pro Glu Leu Ser Glu Leu Lys Thr Val Thr Gly
Thr Asn Pro 260 265 270Val Phe Ala Gly Ala Asn Tyr Ala Ala Trp Ala
Val Asn Val Ala Gln 275 280 285Val Ile Asp Ser Glu Thr Ala Asp Asn
Leu Glu Lys Thr Thr Ala Ala 290 295 300Leu Ser Ile Leu Pro Gly Ile
Gly Ser Val Met Gly Ile Ala Asp Gly305 310 315 320Ala Val His His
Asn Thr Glu Glu Ile Val Ala Gln Ser Ile Ala Leu 325 330 335Ser Ser
Leu Met Val Ala Gln Ala Ile Pro Leu Val Gly Glu Leu Val 340 345
350Asp Ile Gly Phe Ala Ala Tyr Asn Phe Val Glu Asp Ser Ile Ile Arg
355 360 365Thr Gly Phe Gln Gly Glu Ser Gly His Lys Thr Gln Pro His
Met His 370 375 380His His His His His385164506PRTArtificial
SequenceClostridium perfringens str. 13 pfoA perfringolysin O 6x
histidine tag 164Met Ile Arg Phe Lys Lys Thr Lys Leu Ile Ala Ser
Ile Ala Met Ala1 5 10 15Leu Cys Leu Phe Ser Gln Pro Val Ile Ser Phe
Ser Lys Asp Ile Thr 20 25 30Asp Lys Asn Gln Ser Ile Asp Ser Gly Ile
Ser Ser Leu Ser Tyr Asn 35 40 45Arg Asn Glu Val Leu Ala Ser Asn Gly
Asp Lys Ile Glu Ser Phe Val 50 55 60Pro Lys Glu Gly Lys Lys Thr Gly
Asn Lys Phe Ile Val Val Glu Arg65 70 75 80Gln Lys Arg Ser Leu Thr
Thr Ser Pro Val Asp Ile Ser Ile Ile Asp 85 90 95Ser Val Asn Asp Arg
Thr Tyr Pro Gly Ala Leu Gln Leu Ala Asp Lys 100 105 110Ala Phe Val
Glu Asn Arg Pro Thr Ile Leu Met Val Lys Arg Lys Pro 115 120 125Ile
Asn Ile Asn Ile Asp Leu Pro Gly Leu Lys Gly Glu Asn Ser Ile 130 135
140Lys Val Asp Asp Pro Thr Tyr Gly Lys Val Ser Gly Ala Ile Asp
Glu145 150 155 160Leu Val Ser Lys Trp Asn Glu Lys Tyr Ser Ser Thr
His Thr Leu Pro 165 170 175Ala Arg Thr Gln Tyr Ser Glu Ser Met Val
Tyr Ser Lys Ser Gln Ile 180 185 190Ser Ser Ala Leu Asn Val Asn Ala
Lys Val Leu Glu Asn Ser Leu Gly 195 200 205Val Asp Phe Asn Ala Val
Ala Asn Asn Glu Lys Lys Val Met Ile Leu 210 215 220Ala Tyr Lys Gln
Ile Phe Tyr Thr Val Ser Ala Asp Leu Pro Lys Asn225 230 235 240Pro
Ser Asp Leu Phe Asp Asp Ser Val Thr Phe Asn Asp Leu Lys Gln 245 250
255Lys Gly Val Ser Asn Glu Ala Pro Pro Leu Met Val Ser Asn Val Ala
260 265 270Tyr Gly Arg Thr Ile Tyr Val Lys Leu Glu Thr Thr Ser Ser
Ser Lys 275 280 285Asp Val Gln Ala Ala Phe Lys Ala Leu Ile Lys Asn
Thr Asp Ile Lys 290 295 300Asn Ser Gln Gln Tyr Lys Asp Ile Tyr Glu
Asn Ser Ser Phe Thr Ala305 310 315 320Val Val Leu Gly Gly Asp Ala
Gln Glu His Asn Lys Val Val Thr Lys 325 330 335Asp Phe Asp Glu Ile
Arg Lys Val Ile Lys Asp Asn Ala Thr Phe Ser 340 345 350Thr Lys Asn
Pro Ala Tyr Pro Ile Ser Tyr Thr Ser Val Phe Leu Lys 355 360 365Asp
Asn Ser Val Ala Ala Val His Asn Lys Thr Asp Tyr Ile Glu Thr 370 375
380Thr Ser Thr Glu Tyr Ser Lys Gly Lys Ile Asn Leu Asp His Ser
Gly385 390 395 400Ala Tyr Val Ala Gln Phe Glu Val Ala Trp Asp Glu
Val Ser Tyr Asp 405 410 415Lys Glu Gly Asn Glu Val Leu Thr His Lys
Thr Trp Asp Gly Asn Tyr 420 425 430Gln Asp Lys Thr Ala His Tyr Ser
Thr Val Ile Pro Leu Glu Ala Asn 435 440 445Ala Arg Asn Ile Arg Ile
Lys Ala Arg Glu Cys Thr Gly Leu Ala Trp 450 455 460Glu Trp Trp Arg
Asp Val Ile Ser Glu Tyr Asp Val Pro Leu Thr Asn465 470 475 480Asn
Ile Asn Val Ser Ile Trp Gly Thr Thr Leu Tyr Pro Gly Ser Ser 485 490
495Ile Thr Tyr Asn His His His His His His 500
505165273PRTArtificial SequenceRicin A chain 6x histidine tag
165Ile Phe Pro Lys Gln Tyr Pro Ile Ile Asn Phe Thr Thr Ala Gly Ala1
5 10 15Thr Val Gln Ser Tyr Thr Asn Phe Ile Arg Ala Val Arg Gly Arg
Leu 20 25 30Thr Thr Gly Ala Asp Val Arg His Glu Ile Pro Val Leu Pro
Asn Arg 35 40 45Val Gly Leu Pro Ile Asn Gln Arg Phe Ile Leu Val Glu
Leu Ser Asn 50 55 60His Ala Glu Leu Ser Val Thr Leu Ala Leu Asp Val
Thr Asn Ala Tyr65 70 75 80Val Val Gly Tyr Arg Ala Gly Asn Ser Ala
Tyr Phe Phe His Pro Asp 85 90 95Ala Gln Glu Asp Ala Glu Ala Ile Thr
His Leu Phe Thr Asp Val Gln 100 105 110Asn Arg Tyr Thr Phe Ala Phe
Gly Gly Asn Tyr Asp Arg Leu Glu Gln 115 120 125Leu Ala Gly Asn Leu
Arg Glu Asn Ile Glu Leu Gly Asn Gly Pro Leu 130 135 140Glu Glu Ala
Ile Ser Ala Leu Tyr Tyr Tyr Ser Thr Gly Gly Thr Gln145 150 155
160Leu Pro Thr Leu Ala Arg Ser Phe Ile Ile Cys Ile Gln Met Ile Ser
165 170 175Glu Ala Ala Arg Phe Gln Tyr Ile Glu Gly Glu Met Arg Thr
Arg Ile 180 185 190Arg Tyr Asn Arg Arg Ser Ala Pro Asp Pro Ser Val
Ile Thr Leu Glu 195 200 205Asn Ser Trp Gly Arg Leu Ser Thr Ala Ile
Gln Glu Ser Asn Gln Gly 210 215 220Ala Phe Ala Ser Pro Ile Gln Leu
Gln Arg Arg Asn Gly Ser Lys Phe225 230 235 240Ser Val Tyr Asp Val
Ser Ile Leu Ile Pro Ile Ile Ala Leu Met Val 245 250 255Tyr Arg Cys
Ala Pro Pro Pro Ser Ser Gln Phe His His His His His 260 265
270His166285PRTArtificial SequenceRicin A chain linker peptide 6x
histidine tag 166Ile Phe Pro Lys Gln Tyr Pro Ile Ile Asn Phe Thr
Thr Ala Gly Ala1 5 10 15Thr Val Gln Ser Tyr Thr Asn Phe Ile Arg Ala
Val Arg Gly Arg Leu 20 25 30Thr Thr Gly Ala Asp Val Arg His Glu Ile
Pro Val Leu Pro Asn Arg 35 40 45Val Gly Leu Pro Ile Asn Gln Arg Phe
Ile Leu Val Glu Leu Ser Asn 50 55 60His Ala Glu Leu Ser Val Thr Leu
Ala Leu Asp Val Thr Asn Ala Tyr65 70 75 80Val Val Gly Tyr Arg Ala
Gly Asn Ser Ala Tyr Phe Phe His Pro Asp 85 90 95Ala Gln Glu Asp Ala
Glu Ala Ile Thr His Leu Phe Thr Asp Val Gln 100 105 110Asn Arg Tyr
Thr Phe Ala Phe Gly Gly Asn Tyr Asp Arg Leu Glu Gln 115 120 125Leu
Ala Gly Asn Leu Arg Glu Asn Ile Glu Leu Gly Asn Gly Pro Leu 130 135
140Glu Glu Ala Ile Ser Ala Leu Tyr Tyr Tyr Ser Thr Gly Gly Thr
Gln145 150 155 160Leu Pro Thr Leu Ala Arg Ser Phe Ile Ile Cys Ile
Gln Met Ile Ser 165 170 175Glu Ala Ala Arg Phe Gln Tyr Ile Glu Gly
Glu Met Arg Thr Arg Ile 180 185 190Arg Tyr Asn Arg Arg Ser Ala Pro
Asp Pro Ser Val Ile Thr Leu Glu 195 200 205Asn Ser Trp Gly Arg Leu
Ser Thr Ala Ile Gln Glu Ser Asn Gln Gly 210 215 220Ala Phe Ala Ser
Pro Ile Gln Leu Gln Arg Arg Asn Gly Ser Lys Phe225 230 235 240Ser
Val Tyr Asp Val Ser Ile Leu Ile Pro Ile Ile Ala Leu Met Val 245 250
255Tyr Arg Cys Ala Pro Pro Pro Ser Ser Gln Phe Ser Leu Leu Ile Arg
260 265 270Pro Val Val Pro Asn Phe Asn His His His His His His 275
280 285167256PRTArtificial SequencePlant RIP bouganin with reduced
immunogenic potential 6x histidine tag 167Tyr Asn Thr Val Ser Phe
Asn Leu Gly Glu Ala Tyr Glu Tyr Pro Thr1 5 10 15Phe Ile Gln Asp Leu
Arg Asn Glu Leu Ala Lys Gly Thr Pro Val Cys 20 25 30Gln Leu Pro Val
Thr Leu Gln Thr Ile Ala Asp Asp Lys Arg Phe Val 35 40 45Leu Val Asp
Ile Thr Thr Thr Ser Lys Lys Thr Val Lys Val Ala Ile 50 55 60Asp Val
Thr Asp Val Tyr Val Val Gly Tyr Gln Asp Lys Trp Asp Gly65 70 75
80Lys Asp Arg Ala Val Phe Leu Asp Lys Val Pro Thr Val Ala Thr Ser
85 90 95Lys Leu Phe Pro Gly Val Thr Asn Arg Val Thr Leu Thr Phe Asp
Gly 100 105 110Ser Tyr Gln Lys Leu Val Asn Ala Ala Lys Ala Asp Arg
Lys Ala Leu 115 120 125Glu Leu Gly Val Asn Lys Leu Glu Phe Ser Ile
Glu Ala Ile His Gly 130 135 140Lys Thr Ile Asn Gly Gln Glu Ala Ala
Lys Phe Phe Leu Ile Val Ile145 150 155 160Gln Met Val Ser Glu Ala
Ala Arg Phe Lys Tyr Ile Glu Thr Glu Val 165 170 175Val Asp Arg Gly
Leu Tyr Gly Ser Phe Lys Pro Asn Phe Lys Val Leu 180 185 190Asn Leu
Glu Asn Asn Trp Gly Asp Ile Ser Asp Ala Ile His Lys Ser 195 200
205Ser Pro Gln Cys Thr Thr Ile Asn Pro Ala Leu Gln Leu Ile Ser Pro
210 215 220Ser Asn Asp Pro Trp Val Val Asn Lys Val Ser Gln Ile Ser
Pro Asp225 230 235 240Met Gly Ile Leu Lys Phe Lys Ser Ser Lys His
His His His His His 245 250 255168149PRTArtificial SequenceHuman
RNASE3 ribonuclease (RNase A family, 3) protein without N-terminal
signal peptide but with a N-terminal nuclear localisation sequence
6x histidine tag 168Pro Lys Lys Lys Arg Lys Val Glu Ala Ser Arg Pro
Pro Gln Phe Thr1 5 10 15Arg Ala Gln Trp Phe Ala Ile Gln His Ile Ser
Leu Asn Pro Pro Arg 20 25 30Cys Thr Ile Ala Met Arg Ala Ile Asn Asn
Tyr Arg Trp Arg Cys Lys 35 40 45Asn Gln Asn Thr Phe Leu Arg Thr Thr
Phe Ala Asn Val Val Asn Val 50 55 60Cys Gly Asn Gln Ser Ile Arg Cys
Pro His Asn Arg Thr Leu Asn Asn65 70 75 80Cys His Arg Ser Arg Phe
Arg Val Pro Leu Leu His Cys Asp Leu Ile 85 90 95Asn Pro Gly Ala Gln
Asn Ile Ser Asn Cys Thr Tyr Ala Asp Arg Pro 100 105 110Gly Arg Arg
Phe Tyr Val Val Ala Cys Asp Asn Arg Asp Pro Arg Asp 115 120 125Ser
Pro Arg Tyr Pro Val Val Pro Val His Leu Asp Thr Thr Ile His 130 135
140His His His His His14516918PRTArtificial SequenceAntigen for
human myeloma cell line U266 antibody IgE-ND 169Leu Ser Pro His Leu
Leu Trp Asp Leu Phe Arg Val Gly Leu Pro Gly1 5 10 15Ala
Ala170146PRTDermatophagoides farinae 170Met Ile Ser Lys Ile Leu Cys
Leu Ser Leu Leu Val Ala Ala Val Val1 5 10 15Ala Asp Gln Val Asp Val
Lys Asp Cys Ala Asn Asn Glu Ile Lys Lys 20 25 30Val Met Val Asp Gly
Cys His Gly Ser Asp Pro Cys Ile Ile His Arg 35 40 45Gly Lys Pro Phe
Thr Leu Glu Ala Leu Phe Asp Ala Asn Gln Asn Thr 50 55 60Lys Thr Ala
Lys Ile Glu Ile Lys Ala Ser Leu Asp Gly Leu Glu Ile65 70 75 80Asp
Val Pro Gly Ile Asp Thr Asn Ala Cys His Phe Met Lys Cys Pro 85 90
95Leu Val Lys Gly Gln Gln Tyr Asp Ile Lys Tyr Thr Trp Asn Val Pro
100 105 110Lys Ile Ala Pro Lys Ser Glu Asn Val Val Val Thr Val Lys
Leu Ile 115 120 125Gly Asp Asn Gly Val Leu Ala Cys Ala Ile Ala Thr
His Gly Lys Ile 130 135 140Arg Asp145171320PRTDermatophagoides
pteronyssinus 171Met Lys Ile Val Leu Ala Ile Ala Ser Leu Leu Ala
Leu Ser Ala Val1 5 10 15Tyr Ala Arg Pro Ser Ser Ile Lys Thr Phe Glu
Glu Tyr Lys Lys Ala 20 25 30Phe Asn Lys Ser Tyr Ala Thr Phe Glu Asp
Glu Glu Ala Ala Arg Lys 35 40 45Asn Phe Leu Glu Ser Val Lys Tyr Val
Gln Ser Asn Gly Gly Ala Ile 50 55 60Asn His Leu Ser Asp Leu Ser Leu
Asp Glu Phe Lys Asn Arg Phe Leu65 70 75 80Met Ser Ala Glu Ala Phe
Glu His Leu Lys Thr Gln Phe Asp Leu Asn 85 90 95Ala Glu Thr Asn Ala
Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile 100 105 110Asp Leu Arg
Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly 115 120 125Cys
Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala 130 135
140Tyr Leu Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu
Leu145 150 155 160Val Asp Cys Ala Ser Gln His Gly Cys His Gly Asp
Thr Ile Pro Arg 165 170 175Gly Ile Glu Tyr Ile Gln His Asn Gly Val
Val Gln Glu Ser Tyr Tyr 180 185 190Arg Tyr Val Ala Arg Glu Gln Ser
Cys Arg Arg Pro Asn Ala Gln Arg 195 200 205Phe Gly Ile Ser Asn Tyr
Cys Gln Ile Tyr Pro Pro Asn Val Asn Lys 210 215 220Ile Arg Glu Ala
Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile225 230 235 240Gly
Ile Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile 245 250
255Ile Gln Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile
260 265 270Val Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val
Arg Asn 275 280 285Ser Trp Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly
Tyr Phe Ala Ala 290 295 300Asn Ile Asp Leu Met Met Ile Glu Glu Tyr
Pro Tyr Val Val Ile Leu305 310 315 320172141PRTTyrophagus
putrescentiae 172Met Lys Phe Leu Ile Leu Phe Ala Leu Val Ala Val
Ala Ala Ala Gly1 5 10 15Gln Val Lys Phe Thr Asp Cys Gly Lys Lys Glu
Ile Ala Ser Val Ala 20 25 30Val Asp Gly Cys Glu Gly Asp Leu Cys Val
Ile His Lys Ser Lys Pro 35 40 45Val His Val Ile Ala Glu Phe Thr Ala
Asn Gln Asp Thr Cys Lys Ile 50 55 60Glu Val Lys Val Thr Gly Gln Leu
Asn Gly Leu Glu Val Pro Ile Pro65 70 75 80Gly Ile Glu Thr Asp Gly
Cys Lys Val Leu Lys Cys Pro Leu
Lys Lys 85 90 95Gly Thr Lys Tyr Thr Met Asn Tyr Ser Val Asn Val Pro
Ser Val Val 100 105 110Pro Asn Ile Lys Thr Val Val Lys Leu Leu Ala
Thr Gly Glu His Gly 115 120 125Val Leu Ala Cys Gly Ala Val Asn Thr
Asp Val Lys Pro 130 135 140173109PRTFelis catus 173Met Arg Gly Ala
Leu Leu Val Leu Ala Leu Leu Val Thr Gln Ala Leu1 5 10 15Gly Val Lys
Met Ala Glu Thr Cys Pro Ile Phe Tyr Asp Val Phe Phe 20 25 30Ala Val
Ala Asn Gly Asn Glu Leu Leu Leu Asp Leu Ser Leu Thr Lys 35 40 45Val
Asn Ala Thr Glu Pro Glu Arg Thr Ala Met Lys Lys Ile Gln Asp 50 55
60Cys Tyr Val Glu Asn Gly Leu Ile Ser Arg Val Leu Asp Gly Leu Val65
70 75 80Met Thr Thr Ile Ser Ser Ser Lys Asp Cys Met Gly Glu Ala Val
Gln 85 90 95Asn Thr Val Glu Asp Leu Lys Leu Asn Thr Leu Gly Arg 100
10517492PRTFelis catus 174Met Lys Gly Ala Cys Val Leu Val Leu Leu
Trp Ala Ala Leu Leu Leu1 5 10 15Ile Ser Gly Gly Asn Cys Glu Ile Cys
Pro Ala Val Lys Arg Asp Val 20 25 30Asp Leu Phe Leu Thr Gly Thr Pro
Asp Glu Tyr Val Glu Gln Val Ala 35 40 45Gln Tyr Lys Ala Leu Pro Val
Val Leu Glu Asn Ala Arg Ile Leu Lys 50 55 60Asn Cys Val Asp Ala Lys
Met Thr Glu Glu Asp Lys Glu Asn Ala Leu65 70 75 80Ser Val Leu Asp
Lys Ile Tyr Thr Ser Pro Leu Cys 85 90175146PRTFelis catus 175Glu
Ile Cys Pro Ala Val Lys Arg Asp Val Asp Leu Phe Leu Thr Gly1 5 10
15Thr Pro Asp Glu Tyr Val Glu Gln Val Ala Gln Tyr Lys Ala Leu Pro
20 25 30Val Val Leu Glu Asn Ala Arg Ile Leu Lys Asn Cys Val Asp Ala
Lys 35 40 45Met Thr Glu Glu Asp Lys Glu Asn Ala Leu Ser Leu Leu Asp
Lys Ile 50 55 60Tyr Thr Ser Pro Leu Cys Val Lys Met Ala Glu Thr Cys
Pro Ile Phe65 70 75 80Tyr Asp Val Phe Phe Ala Val Ala Asn Gly Asn
Glu Leu Leu Leu Asp 85 90 95Leu Ser Leu Thr Lys Val Asn Ala Thr Glu
Pro Glu Arg Thr Ala Met 100 105 110Lys Lys Ile Gln Asp Cys Tyr Val
Glu Asn Gly Leu Ile Ser Arg Val 115 120 125Leu Asp Gly Leu Val Met
Thr Thr Ile Ser Ser Ser Lys Asp Cys Met 130 135 140Gly
Glu145176172PRTArachis hypogaea 176Met Ala Lys Leu Thr Ile Leu Val
Ala Leu Ala Leu Phe Leu Leu Ala1 5 10 15Ala His Ala Ser Ala Arg Gln
Gln Trp Glu Leu Gln Gly Asp Arg Arg 20 25 30Cys Gln Ser Gln Leu Glu
Arg Ala Asn Leu Arg Pro Cys Glu Gln His 35 40 45Leu Met Gln Lys Ile
Gln Arg Asp Glu Asp Ser Tyr Gly Arg Asp Pro 50 55 60Tyr Ser Pro Ser
Gln Asp Pro Tyr Ser Pro Ser Gln Asp Pro Asp Arg65 70 75 80Arg Asp
Pro Tyr Ser Pro Ser Pro Tyr Asp Arg Arg Gly Ala Gly Ser 85 90 95Ser
Gln His Gln Glu Arg Cys Cys Asn Glu Leu Asn Glu Phe Glu Asn 100 105
110Asn Gln Arg Cys Met Cys Glu Ala Leu Gln Gln Ile Met Glu Asn Gln
115 120 125Ser Asp Arg Leu Gln Gly Arg Gln Gln Glu Gln Gln Phe Lys
Arg Glu 130 135 140Leu Arg Asn Leu Pro Gln Gln Cys Gly Leu Arg Ala
Pro Gln Arg Cys145 150 155 160Asp Leu Glu Val Glu Ser Gly Gly Arg
Asp Arg Tyr 165 170177157PRTAlternaria alternata (Alternaria rot
fungus) 177Met Gln Phe Thr Thr Ile Ala Ser Leu Phe Ala Ala Ala Gly
Leu Ala1 5 10 15Ala Ala Ala Pro Leu Glu Ser Arg Gln Asp Thr Ala Ser
Cys Pro Val 20 25 30Thr Thr Glu Gly Asp Tyr Val Trp Lys Ile Ser Glu
Phe Tyr Gly Arg 35 40 45Lys Pro Glu Gly Thr Tyr Tyr Asn Ser Leu Gly
Phe Asn Ile Lys Ala 50 55 60Thr Asn Gly Gly Thr Leu Asp Phe Thr Cys
Ser Ala Gln Ala Asp Lys65 70 75 80Leu Glu Asp His Lys Trp Tyr Ser
Cys Gly Glu Asn Ser Phe Met Asp 85 90 95Phe Ser Phe Asp Ser Asp Arg
Ser Gly Leu Leu Leu Lys Gln Lys Val 100 105 110Ser Asp Asp Ile Thr
Tyr Val Ala Thr Ala Thr Leu Pro Asn Tyr Cys 115 120 125Arg Ala Gly
Gly Asn Gly Pro Lys Asp Phe Val Cys Gln Gly Val Ala 130 135 140Asp
Ala Tyr Ile Thr Leu Val Thr Leu Pro Lys Ser Ser145 150
155178174PRTCanis familiaris 178Met Lys Thr Leu Leu Leu Thr Ile Gly
Phe Ser Leu Ile Ala Ile Leu1 5 10 15Gln Ala Gln Asp Thr Pro Ala Leu
Gly Lys Asp Thr Val Ala Val Ser 20 25 30Gly Lys Trp Tyr Leu Lys Ala
Met Thr Ala Asp Gln Glu Val Pro Glu 35 40 45Lys Pro Asp Ser Val Thr
Pro Met Ile Leu Lys Ala Gln Lys Gly Gly 50 55 60Asn Leu Glu Ala Lys
Ile Thr Met Leu Thr Asn Gly Gln Cys Gln Asn65 70 75 80Ile Thr Val
Val Leu His Lys Thr Ser Glu Pro Gly Lys Tyr Thr Ala 85 90 95Tyr Glu
Gly Gln Arg Val Val Phe Ile Gln Pro Ser Pro Val Arg Asp 100 105
110His Tyr Ile Leu Tyr Cys Glu Gly Glu Leu His Gly Arg Gln Ile Arg
115 120 125Met Ala Lys Leu Leu Gly Arg Asp Pro Glu Gln Ser Gln Glu
Ala Leu 130 135 140Glu Asp Phe Arg Glu Phe Ser Arg Ala Lys Gly Leu
Asn Gln Glu Ile145 150 155 160Leu Glu Leu Ala Gln Ser Glu Thr Cys
Ser Pro Gly Gly Gln 165 170179286PRTTriticum aestivum 179Met Lys
Thr Phe Leu Ile Leu Val Leu Leu Ala Ile Val Ala Thr Thr1 5 10 15Ala
Thr Thr Ala Val Arg Phe Pro Val Pro Gln Leu Gln Pro Gln Asn 20 25
30Pro Ser Gln Gln Gln Pro Gln Glu Gln Val Pro Leu Val Gln Gln Gln
35 40 45Gln Phe Leu Gly Gln Gln Gln Pro Phe Pro Pro Gln Gln Pro Tyr
Pro 50 55 60Gln Pro Gln Pro Phe Pro Ser Gln Leu Pro Tyr Leu Gln Leu
Gln Pro65 70 75 80Phe Pro Gln Pro Gln Leu Pro Tyr Ser Gln Pro Gln
Pro Phe Arg Pro 85 90 95Gln Gln Pro Tyr Pro Gln Pro Gln Pro Gln Tyr
Ser Gln Pro Gln Gln 100 105 110Pro Ile Ser Gln Gln Gln Gln Gln Gln
Gln Gln Gln Gln Gln Gln Gln 115 120 125Gln Gln Gln Gln Gln Ile Leu
Gln Gln Ile Leu Gln Gln Gln Leu Ile 130 135 140Pro Cys Met Asp Val
Val Leu Gln Gln His Asn Ile Ala His Gly Arg145 150 155 160Ser Gln
Val Leu Gln Gln Ser Thr Tyr Gln Leu Leu Gln Glu Leu Cys 165 170
175Cys Gln His Leu Trp Gln Ile Pro Glu Gln Ser Gln Cys Gln Ala Ile
180 185 190His Asn Val Val His Ala Ile Ile Leu His Gln Gln Gln Lys
Gln Gln 195 200 205Gln Gln Pro Ser Ser Gln Val Ser Phe Gln Gln Pro
Leu Gln Gln Tyr 210 215 220Pro Leu Gly Gln Gly Ser Phe Arg Pro Ser
Gln Gln Asn Pro Gln Ala225 230 235 240Gln Gly Ser Val Gln Pro Gln
Gln Leu Pro Gln Phe Glu Glu Ile Arg 245 250 255Asn Leu Ala Leu Gln
Thr Leu Pro Ala Met Cys Asn Val Tyr Ile Pro 260 265 270Pro Tyr Cys
Thr Ile Ala Pro Phe Gly Ile Phe Gly Thr Asn 275 280
285180491PRTBlattella germanica 180Ala Ile Glu Phe Leu Asn Asn Ile
His Asp Leu Leu Gly Ile Pro His1 5 10 15Ile Pro Val Thr Ala Arg Lys
His His Arg Arg Gly Val Gly Ile Thr 20 25 30Gly Leu Ile Asp Asp Ile
Ile Ala Ile Leu Pro Val Asp Asp Leu Tyr 35 40 45Ala Leu Phe Gln Glu
Lys Leu Glu Thr Ser Pro Glu Phe Lys Ala Leu 50 55 60Tyr Asp Ala Ile
Arg Ser Pro Glu Phe Gln Ser Ile Val Gly Thr Leu65 70 75 80Glu Ala
Met Pro Glu Tyr Gln Asn Leu Ile Gln Lys Leu Lys Asp Lys 85 90 95Gly
Val Asp Val Asp His Ile Ile Glu Leu Ile His Gln Ile Phe Asn 100 105
110Ile Val Arg Asp Thr Arg Gly Leu Pro Glu Asp Leu Gln Asp Phe Leu
115 120 125Ala Leu Ile Pro Thr Asp Gln Val Leu Ala Ile Ala Ala Asp
Tyr Leu 130 135 140Ala Asn Asp Ala Glu Val Lys Ala Ala Val Glu Tyr
Leu Lys Ser Asp145 150 155 160Glu Phe Glu Thr Ile Val Val Thr Val
Asp Ser Leu Pro Glu Phe Lys 165 170 175Asn Phe Leu Asn Phe Leu Gln
Thr Asn Gly Leu Asn Ala Ile Glu Phe 180 185 190Leu Asn Asn Ile His
Asp Leu Leu Gly Ile Pro His Ile Pro Val Thr 195 200 205Ala Arg Lys
His Leu Arg Arg Gly Val Gly Ile Thr Gly Leu Ile Asp 210 215 220Asp
Ile Ile Ala Ile Leu Pro Val Asp Asp Leu Tyr Ala Leu Phe Gln225 230
235 240Glu Lys Leu Glu Thr Ser Pro Glu Phe Lys Ala Leu Tyr Asp Ala
Ile 245 250 255Arg Ser Pro Glu Phe Gln Ser Ile Val Glu Thr Leu Lys
Ala Met Pro 260 265 270Glu Tyr Gln Ser Leu Ile Gln Lys Leu Lys Asp
Lys Gly Val Asp Val 275 280 285Asp His Ile Ile Glu Leu Ile His Gln
Ile Phe Asn Ile Val Arg Asp 290 295 300Thr Arg Gly Leu Pro Glu Asp
Leu Gln Asp Phe Leu Ala Leu Ile Pro305 310 315 320Ile Asp Gln Ile
Leu Ala Ile Ala Ala Asp Tyr Leu Ala Asn Asp Ala 325 330 335Glu Val
Gln Ala Ala Val Glu Tyr Leu Lys Ser Asp Glu Phe Glu Thr 340 345
350Ile Val Val Thr Val Asp Ser Leu Pro Glu Phe Lys Asn Phe Leu Asn
355 360 365Phe Leu Gln Thr Asn Gly Leu Asn Ala Ile Glu Phe Ile Asn
Asn Ile 370 375 380His Asp Leu Leu Gly Ile Pro His Ile Pro Ala Thr
Gly Arg Lys His385 390 395 400Val Arg Arg Gly Val Gly Ile Asn Gly
Leu Ile Asp Asp Val Ile Ala 405 410 415Ile Leu Pro Val Asp Glu Leu
Tyr Ala Leu Phe Gln Glu Lys Leu Glu 420 425 430Ser Ser Pro Glu Phe
Lys Ala Leu Tyr Asp Ala Ile Arg Ser Pro Glu 435 440 445Phe Gln Ser
Ile Val Gln Thr Leu Lys Ala Met Pro Glu Tyr Gln Asp 450 455 460Leu
Ile Gln Arg Leu Lys Asp Lys Gly Val Asp Val Asp His Phe Ile465 470
475 480Glu Leu Ile Lys Lys Leu Phe Gly Leu Ser His 485
490181160PRTBetula pendula (Betula verrucosa) 181Met Gly Val Phe
Asn Tyr Glu Thr Glu Thr Thr Ser Val Ile Pro Ala1 5 10 15Ala Arg Leu
Phe Lys Ala Phe Ile Leu Asp Gly Asp Asn Leu Phe Pro 20 25 30Lys Val
Ala Pro Gln Ala Ile Ser Ser Val Glu Asn Ile Glu Gly Asn 35 40 45Gly
Gly Pro Gly Thr Ile Lys Lys Ile Ser Phe Pro Glu Gly Phe Pro 50 55
60Phe Lys Tyr Val Lys Asp Arg Val Asp Glu Val Asp His Thr Asn Phe65
70 75 80Lys Tyr Asn Tyr Ser Val Ile Glu Gly Gly Pro Ile Gly Asp Thr
Leu 85 90 95Glu Lys Ile Ser Asn Glu Ile Lys Ile Val Ala Thr Pro Asp
Gly Gly 100 105 110Ser Ile Leu Lys Ile Ser Asn Lys Tyr His Thr Lys
Gly Asp His Glu 115 120 125Val Lys Ala Glu Gln Val Lys Ala Ser Lys
Glu Met Gly Glu Thr Leu 130 135 140Leu Arg Ala Val Glu Ser Tyr Leu
Leu Ala His Ser Asp Ala Tyr Asn145 150 155 160182160PRTBetula
pendula (Betula verrucosa) 182Met Gly Val Phe Asn Tyr Glu Thr Glu
Ala Thr Ser Val Ile Pro Ala1 5 10 15Ala Arg Met Phe Lys Ala Phe Ile
Leu Asp Gly Asp Lys Leu Val Pro 20 25 30Lys Val Ala Pro Gln Ala Ile
Ser Ser Val Glu Asn Ile Glu Gly Asn 35 40 45Gly Gly Pro Gly Thr Ile
Lys Lys Ile Asn Phe Pro Glu Gly Phe Pro 50 55 60Phe Lys Tyr Val Lys
Asp Arg Val Asp Glu Val Asp His Thr Asn Phe65 70 75 80Lys Tyr Asn
Tyr Ser Val Ile Glu Gly Gly Pro Val Gly Asp Thr Leu 85 90 95Glu Lys
Ile Ser Asn Glu Ile Lys Ile Val Ala Thr Pro Asp Gly Gly 100 105
110Cys Val Leu Lys Ile Ser Asn Lys Tyr His Thr Lys Gly Asn His Glu
115 120 125Val Lys Ala Glu Gln Val Lys Ala Ser Lys Glu Met Gly Glu
Thr Leu 130 135 140Leu Arg Ala Val Glu Ser Tyr Leu Leu Ala His Ser
Asp Ala Tyr Asn145 150 155 160183133PRTBetula pendula (Betula
verrucosa) 183Met Ser Trp Gln Thr Tyr Val Asp Glu His Leu Met Cys
Asp Ile Asp1 5 10 15Gly Gln Ala Ser Asn Ser Leu Ala Ser Ala Ile Val
Gly His Asp Gly 20 25 30Ser Val Trp Ala Gln Ser Ser Ser Phe Pro Gln
Phe Lys Pro Gln Glu 35 40 45Ile Thr Gly Ile Met Lys Asp Phe Glu Glu
Pro Gly His Leu Ala Pro 50 55 60Thr Gly Leu His Leu Gly Gly Ile Lys
Tyr Met Val Ile Gln Gly Glu65 70 75 80Ala Gly Ala Val Ile Arg Gly
Lys Lys Gly Ser Gly Gly Ile Thr Ile 85 90 95Lys Lys Thr Gly Gln Ala
Leu Val Phe Gly Ile Tyr Glu Glu Pro Val 100 105 110Thr Pro Gly Gln
Cys Asn Met Val Val Glu Arg Leu Gly Asp Tyr Leu 115 120 125Ile Asp
Gln Gly Leu 130184263PRTPhleum pratense 184Met Ala Ser Ser Ser Ser
Val Leu Leu Val Val Val Leu Phe Ala Val1 5 10 15Phe Leu Gly Ser Ala
Tyr Gly Ile Pro Lys Val Pro Pro Gly Pro Asn 20 25 30Ile Thr Ala Thr
Tyr Gly Asp Lys Trp Leu Asp Ala Lys Ser Thr Trp 35 40 45Tyr Gly Lys
Pro Thr Gly Ala Gly Pro Lys Asp Asn Gly Gly Ala Cys 50 55 60Gly Tyr
Lys Asp Val Asp Lys Pro Pro Phe Ser Gly Met Thr Gly Cys65 70 75
80Gly Asn Thr Pro Ile Phe Lys Ser Gly Arg Gly Cys Gly Ser Cys Phe
85 90 95Glu Ile Lys Cys Thr Lys Pro Glu Ala Cys Ser Gly Glu Pro Val
Val 100 105 110Val His Ile Thr Asp Asp Asn Glu Glu Pro Ile Ala Pro
Tyr His Phe 115 120 125Asp Leu Ser Gly His Ala Phe Gly Ala Met Ala
Lys Lys Gly Asp Glu 130 135 140Gln Lys Leu Arg Ser Ala Gly Glu Leu
Glu Leu Gln Phe Arg Arg Val145 150 155 160Lys Cys Lys Tyr Pro Glu
Gly Thr Lys Val Thr Phe His Val Glu Lys 165 170 175Gly Ser Asn Pro
Asn Tyr Leu Ala Leu Leu Val Lys Tyr Val Asn Gly 180 185 190Asp Gly
Asp Val Val Ala Val Asp Ile Lys Glu Lys Gly Lys Asp Lys 195 200
205Trp Ile Glu Leu Lys Glu Ser Trp Gly Ala Ile Trp Arg Ile Asp Thr
210 215 220Pro Asp Lys Leu Thr Gly Pro Phe Thr Val Arg Tyr Thr Thr
Glu Gly225 230 235 240Gly Thr Lys Thr Glu Ala Glu Asp Val Ile Pro
Glu Gly Trp Lys Ala 245 250 255Asp Thr Ser Tyr Glu Ser Lys
260185122PRTPhleum pratense 185Met Ser Met Ala Ser Ser Ser Ser Ser
Ser Leu Leu Ala Met Ala Val1 5 10 15Leu Ala Ala Leu Phe Ala Gly Ala
Trp Cys Val Pro Lys Val Thr Phe 20 25 30Thr Val Glu
Lys Gly Ser Asn Glu Lys His Leu Ala Val Leu Val Lys 35 40 45Tyr Glu
Gly Asp Thr Met Ala Glu Val Glu Leu Arg Glu His Gly Ser 50 55 60Asp
Glu Trp Val Ala Met Thr Lys Gly Glu Gly Gly Val Trp Thr Phe65 70 75
80Asp Ser Glu Glu Pro Leu Gln Gly Pro Phe Asn Phe Arg Phe Leu Thr
85 90 95Glu Lys Gly Met Lys Asn Val Phe Asp Asp Val Val Pro Glu Lys
Tyr 100 105 110Thr Ile Gly Ala Thr Tyr Ala Pro Glu Glu 115
120186159PRTMalus domestica 186Met Gly Val Tyr Thr Phe Glu Asn Glu
Phe Thr Ser Glu Ile Pro Pro1 5 10 15Ser Arg Leu Phe Lys Ala Phe Val
Leu Asp Ala Asp Asn Leu Ile Pro 20 25 30Lys Ile Ala Pro Gln Ala Ile
Lys Gln Ala Glu Ile Leu Glu Gly Asn 35 40 45Gly Gly Pro Gly Thr Ile
Lys Lys Ile Thr Phe Gly Glu Gly Ser Gln 50 55 60Tyr Gly Tyr Val Lys
His Arg Ile Asp Ser Ile Asp Glu Ala Ser Tyr65 70 75 80Ser Tyr Ser
Tyr Thr Leu Ile Glu Gly Asp Ala Leu Thr Asp Thr Ile 85 90 95Glu Lys
Ile Ser Tyr Glu Thr Lys Leu Val Ala Cys Gly Ser Gly Ser 100 105
110Thr Ile Lys Ser Ile Ser His Tyr His Thr Lys Gly Asn Ile Glu Ile
115 120 125Lys Glu Glu His Val Lys Val Gly Lys Glu Lys Ala His Gly
Leu Phe 130 135 140Lys Leu Ile Glu Ser Tyr Leu Lys Asp His Pro Asp
Ala Tyr Asn145 150 15518796PRTDactylis glomerata 187Val Lys Val Thr
Phe Lys Val Glu Lys Gly Ser Asp Pro Lys Lys Leu1 5 10 15Val Leu Asp
Ile Lys Tyr Thr Arg Pro Gly Asp Thr Leu Ala Glu Val 20 25 30Glu Leu
Arg Gln His Gly Ser Glu Glu Trp Glu Pro Leu Thr Lys Lys 35 40 45Gly
Asn Leu Trp Glu Val Lys Ser Ser Lys Pro Leu Thr Gly Pro Phe 50 55
60Asn Phe Arg Phe Met Ser Lys Gly Gly Met Arg Asn Val Phe Asp Glu65
70 75 80Val Ile Pro Thr Ala Phe Lys Ile Gly Thr Thr Tyr Thr Pro Glu
Glu 85 90 95188269PRTPhalaris aquatica 188Met Met Lys Met Val Cys
Ser Ser Ser Ser Ser Ser Leu Leu Val Val1 5 10 15Ala Ala Leu Leu Ala
Val Phe Val Gly Ser Ala Gln Gly Ile Ala Lys 20 25 30Val Pro Pro Gly
Pro Asn Ile Thr Ala Glu Tyr Gly Asp Lys Trp Leu 35 40 45Asp Ala Lys
Ser Thr Trp Tyr Gly Lys Pro Thr Gly Ala Gly Pro Lys 50 55 60Asp Asn
Gly Gly Ala Cys Gly Tyr Lys Asp Val Asp Lys Ala Pro Phe65 70 75
80Asn Gly Met Thr Gly Cys Gly Asn Thr Pro Ile Phe Lys Asp Gly Arg
85 90 95Gly Cys Gly Ser Cys Phe Glu Leu Lys Cys Ser Lys Pro Glu Ser
Cys 100 105 110Ser Gly Glu Pro Ile Thr Val His Ile Thr Asp Asp Asn
Glu Glu Pro 115 120 125Ile Ala Pro Tyr His Phe Asp Leu Ser Gly His
Ala Phe Gly Ser Met 130 135 140Ala Lys Lys Gly Glu Glu Glu Asn Val
Arg Gly Ala Gly Glu Leu Glu145 150 155 160Leu Gln Phe Arg Arg Val
Lys Cys Lys Tyr Pro Asp Gly Thr Lys Pro 165 170 175Thr Phe His Val
Glu Lys Gly Ser Asn Pro Asn Tyr Leu Ala Leu Leu 180 185 190Val Lys
Tyr Val Asp Gly Asp Gly Asp Val Val Ala Val Asp Ile Lys 195 200
205Glu Lys Gly Lys Asp Lys Trp Ile Glu Leu Lys Glu Ser Trp Gly Ala
210 215 220Ile Trp Arg Ile Asp Thr Pro Asp Lys Leu Thr Gly Pro Phe
Thr Val225 230 235 240Arg Tyr Thr Thr Glu Gly Gly Thr Lys Ala Glu
Phe Glu Asp Val Ile 245 250 255Pro Glu Gly Trp Lys Ala Asp Thr His
Asp Ala Ser Lys 260 265189246PRTCynodon dactylon 189Ala Ile Gly Asp
Lys Pro Gly Pro Asn Ile Thr Ala Thr Tyr Gly Ser1 5 10 15Lys Trp Leu
Glu Ala Arg Ala Thr Phe Tyr Gly Ser Asn Pro Arg Gly 20 25 30Ala Ala
Pro Asp Asp His Gly Gly Ala Cys Gly Tyr Lys Asp Val Asp 35 40 45Lys
Pro Pro Phe Asp Gly Met Thr Ala Cys Gly Asn Glu Pro Ile Phe 50 55
60Lys Asp Gly Leu Gly Cys Arg Ala Cys Tyr Glu Ile Lys Cys Lys Glu65
70 75 80Pro Val Glu Cys Ser Gly Glu Pro Val Leu Val Lys Ile Thr Asp
Lys 85 90 95Asn Tyr Glu His Ile Ala Ala Tyr His Phe Asp Leu Ser Gly
Lys Ala 100 105 110Phe Gly Ala Met Ala Lys Lys Gly Gln Glu Asp Lys
Leu Arg Lys Ala 115 120 125Gly Glu Leu Thr Leu Gln Phe Arg Arg Val
Lys Cys Lys Tyr Pro Ser 130 135 140Gly Thr Lys Ile Thr Phe His Ile
Glu Lys Gly Ser Asn Asp His Tyr145 150 155 160Leu Ala Leu Leu Val
Lys Tyr Ala Ala Gly Asp Gly Asn Ile Val Ala 165 170 175Val Asp Ile
Lys Pro Arg Asp Ser Asp Glu Phe Ile Pro Met Lys Ser 180 185 190Ser
Trp Gly Ala Ile Trp Arg Ile Asp Pro Lys Lys Pro Leu Lys Gly 195 200
205Pro Phe Ser Ile Arg Leu Thr Ser Glu Gly Gly Ala His Leu Val Gln
210 215 220Asp Asp Val Ile Pro Ala Asn Trp Lys Pro Asp Thr Val Tyr
Thr Ser225 230 235 240Lys Leu Gln Phe Gly Ala 245190214PRTBos
primigenius 190Met Lys Leu Leu Ile Leu Thr Cys Leu Val Ala Val Ala
Leu Ala Arg1 5 10 15Pro Lys His Pro Ile Lys His Gln Gly Leu Pro Gln
Glu Val Leu Asn 20 25 30Glu Asn Leu Leu Arg Phe Phe Val Ala Pro Phe
Pro Glu Val Phe Gly 35 40 45Lys Glu Lys Val Asn Glu Leu Ser Lys Asp
Ile Gly Ser Glu Ser Thr 50 55 60Glu Asp Gln Ala Met Glu Asp Ile Lys
Gln Met Glu Ala Glu Ser Ile65 70 75 80Ser Ser Ser Glu Glu Ile Val
Pro Asn Ser Val Glu Gln Lys His Ile 85 90 95Gln Lys Glu Asp Val Pro
Ser Glu Arg Tyr Leu Gly Tyr Leu Glu Gln 100 105 110Leu Leu Arg Leu
Lys Lys Tyr Lys Val Pro Gln Leu Glu Ile Val Pro 115 120 125Asn Ser
Ala Glu Glu Arg Leu His Ser Met Lys Glu Gly Ile His Ala 130 135
140Gln Gln Lys Glu Pro Met Ile Gly Val Asn Gln Glu Leu Ala Tyr
Phe145 150 155 160Tyr Pro Glu Leu Phe Arg Gln Phe Tyr Gln Leu Asp
Ala Tyr Pro Ser 165 170 175Gly Ala Trp Tyr Tyr Val Pro Leu Gly Thr
Gln Tyr Thr Asp Ala Pro 180 185 190Ser Phe Ser Asp Ile Pro Asn Pro
Ile Gly Ser Glu Asn Ser Glu Lys 195 200 205Thr Thr Met Pro Leu Trp
210191142PRTBos primigenius 191Met Met Ser Phe Val Ser Leu Leu Leu
Val Gly Ile Leu Phe His Ala1 5 10 15Thr Gln Ala Glu Gln Leu Thr Lys
Cys Glu Val Phe Arg Glu Leu Lys 20 25 30Asp Leu Lys Gly Tyr Gly Gly
Val Ser Leu Pro Glu Trp Val Cys Thr 35 40 45Thr Phe His Thr Ser Gly
Tyr Asp Thr Gln Ala Ile Val Gln Asn Asn 50 55 60Asp Ser Thr Glu Tyr
Gly Leu Phe Gln Ile Asn Asn Lys Ile Trp Cys65 70 75 80Lys Asp Asp
Gln Asn Pro His Ser Ser Asn Ile Cys Asn Ile Ser Cys 85 90 95Asp Lys
Phe Leu Asp Asp Asp Leu Thr Asp Asp Ile Met Cys Val Lys 100 105
110Lys Ile Leu Asp Lys Val Gly Ile Asn Tyr Trp Leu Ala His Lys Ala
115 120 125Leu Cys Ser Glu Lys Leu Asp Gln Trp Leu Cys Glu Lys Leu
130 135 140192386PRTGallus gallus 192Met Gly Ser Ile Gly Ala Ala
Ser Met Glu Phe Cys Phe Asp Val Phe1 5 10 15Lys Glu Leu Lys Val His
His Ala Asn Glu Asn Ile Phe Tyr Cys Pro 20 25 30Ile Ala Ile Met Ser
Ala Leu Ala Met Val Tyr Leu Gly Ala Lys Asp 35 40 45Ser Thr Arg Thr
Gln Ile Asn Lys Val Val Arg Phe Asp Lys Leu Pro 50 55 60Gly Phe Gly
Asp Ser Ile Glu Ala Gln Cys Gly Thr Ser Val Asn Val65 70 75 80His
Ser Ser Leu Arg Asp Ile Leu Asn Gln Ile Thr Lys Pro Asn Asp 85 90
95Val Tyr Ser Phe Ser Leu Ala Ser Arg Leu Tyr Ala Glu Glu Arg Tyr
100 105 110Pro Ile Leu Pro Glu Tyr Leu Gln Cys Val Lys Glu Leu Tyr
Arg Gly 115 120 125Gly Leu Glu Pro Ile Asn Phe Gln Thr Ala Ala Asp
Gln Ala Arg Glu 130 135 140Leu Ile Asn Ser Trp Val Glu Ser Gln Thr
Asn Gly Ile Ile Arg Asn145 150 155 160Val Leu Gln Pro Ser Ser Val
Asp Ser Gln Thr Ala Met Val Leu Val 165 170 175Asn Ala Ile Val Phe
Lys Gly Leu Trp Glu Lys Ala Phe Lys Asp Glu 180 185 190Asp Thr Gln
Ala Met Pro Phe Arg Val Thr Glu Gln Glu Ser Lys Pro 195 200 205Val
Gln Met Met Tyr Gln Ile Gly Leu Phe Arg Val Ala Ser Met Ala 210 215
220Ser Glu Lys Met Lys Ile Leu Glu Leu Pro Phe Ala Ser Gly Thr
Met225 230 235 240Ser Met Leu Val Leu Leu Pro Asp Glu Val Ser Gly
Leu Glu Gln Leu 245 250 255Glu Ser Ile Ile Asn Phe Glu Lys Leu Thr
Glu Trp Thr Ser Ser Asn 260 265 270Val Met Glu Glu Arg Lys Ile Lys
Val Tyr Leu Pro Arg Met Lys Met 275 280 285Glu Glu Lys Tyr Asn Leu
Thr Ser Val Leu Met Ala Met Gly Ile Thr 290 295 300Asp Val Phe Ser
Ser Ser Ala Asn Leu Ser Gly Ile Ser Ser Ala Glu305 310 315 320Ser
Leu Lys Ile Ser Gln Ala Val His Ala Ala His Ala Glu Ile Asn 325 330
335Glu Ala Gly Arg Glu Val Val Gly Ser Ala Glu Ala Gly Val Asp Ala
340 345 350Ala Ser Val Ser Glu Glu Phe Arg Ala Asp His Pro Phe Leu
Phe Cys 355 360 365Ile Lys His Ile Ala Thr Asn Ala Val Leu Phe Phe
Gly Arg Cys Val 370 375 380Ser Pro385193147PRTGallus gallus 193Met
Arg Ser Leu Leu Ile Leu Val Leu Cys Phe Leu Pro Leu Ala Ala1 5 10
15Leu Gly Lys Val Phe Gly Arg Cys Glu Leu Ala Ala Ala Met Lys Arg
20 25 30His Gly Leu Asp Asn Tyr Arg Gly Tyr Ser Leu Gly Asn Trp Val
Cys 35 40 45Ala Ala Lys Phe Glu Ser Asn Phe Asn Thr Gln Ala Thr Asn
Arg Asn 50 55 60Thr Asp Gly Ser Thr Asp Tyr Gly Ile Leu Gln Ile Asn
Ser Arg Trp65 70 75 80Trp Cys Asn Asp Gly Arg Thr Pro Gly Ser Arg
Asn Leu Cys Asn Ile 85 90 95Pro Cys Ser Ala Leu Leu Ser Ser Asp Ile
Thr Ala Ser Val Asn Cys 100 105 110Ala Lys Lys Ile Val Ser Asp Gly
Asn Gly Met Asn Ala Trp Val Ala 115 120 125Trp Arg Asn Arg Cys Lys
Gly Thr Asp Val Gln Ala Trp Ile Arg Gly 130 135 140Cys Arg
Leu145194187PRTEquus caballus 194Met Lys Leu Leu Leu Leu Cys Leu
Gly Leu Ile Leu Val Cys Ala Gln1 5 10 15Gln Glu Glu Asn Ser Asp Val
Ala Ile Arg Asn Phe Asp Ile Ser Lys 20 25 30Ile Ser Gly Glu Trp Tyr
Ser Ile Phe Leu Ala Ser Asp Val Lys Glu 35 40 45Lys Ile Glu Glu Asn
Gly Ser Met Arg Val Phe Val Asp Val Ile Arg 50 55 60Ala Leu Asp Asn
Ser Ser Leu Tyr Ala Glu Tyr Gln Thr Lys Val Asn65 70 75 80Gly Glu
Cys Thr Glu Phe Pro Met Val Phe Asp Lys Thr Glu Glu Asp 85 90 95Gly
Val Tyr Ser Leu Asn Tyr Asp Gly Tyr Asn Val Phe Arg Ile Ser 100 105
110Glu Phe Glu Asn Asp Glu His Ile Ile Leu Tyr Leu Val Asn Phe Asp
115 120 125Lys Asp Arg Pro Phe Gln Leu Phe Glu Phe Tyr Ala Arg Glu
Pro Asp 130 135 140Val Ser Pro Glu Ile Lys Glu Glu Phe Val Lys Ile
Val Gln Lys Arg145 150 155 160Gly Ile Val Lys Glu Asn Ile Ile Asp
Leu Thr Lys Ile Asp Arg Cys 165 170 175Phe Gln Leu Arg Gly Asn Gly
Val Ala Gln Ala 180 185195228PRTEquus caballus 195Met Leu Lys Val
Ser Cys Leu Phe Val Leu Leu Cys Gly Leu Leu Val1 5 10 15Pro Ser Ser
Ala Gln Gln Ile Pro Pro Glu Val Ser Ser Gln Ile Thr 20 25 30Asp Ala
Leu Thr Gln Gly Leu Leu Asp Gly Asn Phe Leu Ser Leu Leu 35 40 45Asn
Ala Ile Asn Leu Glu Gly Leu Leu Asn Thr Ile Leu Asp Gln Val 50 55
60Thr Gly Leu Leu Asn Ile Leu Val Gly Pro Leu Leu Gly Pro Ser Asp65
70 75 80Ala Glu Ile Lys Leu Gln Asp Thr Arg Leu Leu Gln Leu Ser Leu
Glu 85 90 95Phe Ser Pro Asp Ser Lys Gly Ile Asp Ile Trp Ile Pro Leu
Glu Leu 100 105 110Ser Val Tyr Leu Lys Leu Leu Ile Leu Glu Pro Leu
Thr Leu Tyr Val 115 120 125Arg Thr Asp Ile Arg Val Gln Leu Arg Leu
Glu Ser Asp Glu Asp Gly 130 135 140Lys Tyr Arg Leu Ala Phe Gly His
Cys Ser Leu Leu Pro Arg Ala Ile145 150 155 160Glu Leu Gln Ser Gly
Asn Pro Leu Ser Leu Pro Val Asn Ala Val Leu 165 170 175Gly Thr Ile
Glu Asn Ala Leu Gly Asn Phe Ile Thr Glu Asp Leu Gly 180 185 190Ala
Gly Leu Cys Pro Thr Leu Asn Ser Leu Val Ser Asn Leu Asp Leu 195 200
205Gln Leu Val Asn Asn Leu Ile Asn Leu Ile Leu Asp Arg Ala Asn Val
210 215 220Asp Leu Ser Val225196558DNAArtificial SequenceNucleotide
sequence encoding pelB-CD3(VL) - FLAG-BirA-U266Ant-6His
196atgaaatacc tgctgccgac cgctgctgct ggtctgctgc tcctcgctgc
ccagccggcg 60atggccgaca ttcagctgac ccagtctcca gcaatcatgt ctgcatctcc
aggggagaag 120gtcaccatga cctgcagagc cagttcaagt gtaagttaca
tgaactggta ccagcagaag 180tcaggcacct cccccaaaag atggatttat
gacacatcca aagtggcttc tggagtccct 240tatcgcttca gtggcagtgg
gtctgggacc tcatactctc tcacaatcag cagcatggag 300gctgaagatg
ctgccactta ttactgccaa cagtggagta gtaacccgct cacgttcggt
360gctgggacca agctggagct gaaatccgga ggtggtggat ccgactacaa
ggatgacgat 420gacaaaggcg gcggcctgaa cgatattttt gaagcgcaga
aaattgaatg gcatctgagc 480ccgcatctgc tgtgggatct gtttcgcgtg
ggcctgccgg gcgcggcggg cggcggccat 540catcaccatc atcattag
558197185PRTArtificial SequencepelB-CD3(VL) -
FLAG-BirA-U266Ant-6His 197Met Lys Tyr Leu Leu Pro Thr Ala Ala Ala
Gly Leu Leu Leu Leu Ala1 5 10 15Ala Gln Pro Ala Met Ala Asp Ile Gln
Leu Thr Gln Ser Pro Ala Ile 20 25 30Met Ser Ala Ser Pro Gly Glu Lys
Val Thr Met Thr Cys Arg Ala Ser 35 40 45Ser Ser Val Ser Tyr Met Asn
Trp Tyr Gln Gln Lys Ser Gly Thr Ser 50 55 60Pro Lys Arg Trp Ile Tyr
Asp Thr Ser Lys Val Ala Ser Gly Val Pro65 70 75 80Tyr Arg Phe Ser
Gly Ser Gly Ser Gly Thr Ser Tyr Ser Leu Thr Ile 85 90 95Ser Ser Met
Glu Ala Glu Asp Ala Ala Thr Tyr Tyr Cys Gln Gln Trp 100 105 110Ser
Ser Asn Pro Leu Thr Phe Gly Ala Gly Thr Lys Leu Glu Leu Lys 115 120
125Ser Gly Gly Gly Gly Ser Asp Tyr Lys Asp Asp Asp Asp Lys Gly Gly
130 135 140Gly Leu Asn Asp Ile Phe Glu Ala Gln Lys Ile Glu Trp His
Leu Ser145 150 155 160Pro His Leu Leu Trp Asp Leu Phe Arg Val
Gly Leu Pro Gly Ala Ala 165 170 175Gly Gly Gly His His His His His
His 180 18519818PRTArtificial SequenceAlternative linker 198Gly Glu
Gly Thr Ser Thr Gly Ser Gly Gly Ser Gly Gly Ser Gly Gly1 5 10 15Ala
Asp1994PRTArtificial SequenceLinker
sequenceMISC_FEATURE(1)..(4)sequence may be repeated 1, 2, 3, 4, 5
or 6 times 199Gly Gly Gly Ser12005PRTArtificial SequenceLinker
sequenceMISC_FEATURE(1)..(5)sequence may be repeated 1, 2, 3, 4, 5
or 6 times 200Gly Gly Gly Gly Ser1 52018PRTArtificial SequenceCMV
pp65 derived peptide 201Thr Pro Arg Val Thr Gly Gly Gly1 5
* * * * *
References