U.S. patent application number 16/918423 was filed with the patent office on 2021-04-08 for methods of manufacturing therapeutic proteins.
The applicant listed for this patent is BioFactura, Inc., Momenta Pharmaceuticals, Inc.. Invention is credited to Chaomei HE, John ROBBLEE, Darryl Bacon SAMPEY, Rasheed TIJANI, Gan WEI.
Application Number | 20210102230 16/918423 |
Document ID | / |
Family ID | 1000005279458 |
Filed Date | 2021-04-08 |
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United States Patent
Application |
20210102230 |
Kind Code |
A1 |
TIJANI; Rasheed ; et
al. |
April 8, 2021 |
METHODS OF MANUFACTURING THERAPEUTIC PROTEINS
Abstract
Disclosed herein are methods of manufacturing therapeutic
proteins.
Inventors: |
TIJANI; Rasheed; (Haverhill,
MA) ; SAMPEY; Darryl Bacon; (Frederick, MD) ;
ROBBLEE; John; (Concord, MA) ; WEI; Gan;
(Lexington, MA) ; HE; Chaomei; (Wellesley,
MA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
BioFactura, Inc.
Momenta Pharmaceuticals, Inc. |
Frederick
Cambridge |
MD
MA |
US
US |
|
|
Family ID: |
1000005279458 |
Appl. No.: |
16/918423 |
Filed: |
July 1, 2020 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
|
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15570178 |
Oct 27, 2017 |
10774353 |
|
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PCT/US2016/029472 |
Apr 27, 2016 |
|
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16918423 |
|
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62153178 |
Apr 27, 2015 |
|
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C12P 21/02 20130101;
C07K 2317/14 20130101; C12P 21/00 20130101; C12Y 603/01002
20130101; C12Y 101/0127 20130101; C07K 16/00 20130101 |
International
Class: |
C12P 21/00 20060101
C12P021/00; C07K 16/00 20060101 C07K016/00; C12P 21/02 20060101
C12P021/02 |
Claims
1.-42. (canceled)
43. A method of manufacturing a therapeutic protein, comprising:
transfecting a cholesterol-auxotrophic cell with (i) a nucleic acid
encoding a protein that restores cholesterol biosynthesis in the
cell; (ii) an aminoglycosidic antibiotic resistance gene; and (iii)
a nucleic acid encoding the therapeutic protein.
44. The method of claim 43, wherein the protein that restores
cholesterol biosynthesis in the cell is a 3-ketosteroid reductase
(3-KSR).
45. The method of claim 43, wherein the aminoglycosidic antibiotic
resistance gene is selected from the group consisting of: a
neomycin resistance gene, a blasticidin resistance gene, a
hygromycin resistance gene, a puromycin resistance gene, a zeocin
resistance gene, and a mycophenolic acid resistance gene.
46. The method of claim 43, comprising transfecting the cell with a
first vector and a second vector, wherein the first vector
comprises the nucleic acid encoding the protein that restores
cholesterol biosynthesis in the cell and the nucleic acid encoding
the therapeutic protein; and the second vector comprises the
aminoglycosidic antibiotic resistance gene.
47. The method of claim 43, comprising transfecting the cell with a
first vector and a second vector, wherein the first vector
comprises the nucleic acid encoding the protein that restores
cholesterol biosynthesis in the cell; and the second vector
comprises the antibiotic resistance gene and the nucleic acid
encoding the therapeutic protein.
48. The method of claim 43, comprising transfecting the cell with a
first vector and a second vector, wherein the first vector
comprises the nucleic acid encoding the protein that restores
cholesterol biosynthesis in the cell and the nucleic acid encoding
the therapeutic protein; and the second vector comprises the
antibiotic resistance gene and the nucleic acid encoding the
therapeutic protein
49. The method of claim 46, wherein the method comprises
transfecting the cell with the first vector and the second vector,
and wherein the transfecting the cell with the first vector is
carried out prior to the transfecting with the second vector, or
the transfecting the cell with the first vector is carried out
after the transfecting with the second vector.
50. The method of claim 47, wherein the method comprises
transfecting the cell with the first vector and the second vector,
and wherein the transfecting the cell with the first vector is
carried out prior to the transfecting with the second vector, or
the transfecting the cell with the first vector is carried out
after the transfecting with the second vector.
51. The method of claim 48, wherein the method comprises
transfecting the cell with the first vector and the second vector,
and wherein the transfecting the cell with the first vector is
carried out prior to the transfecting with the second vector, or
the transfecting the cell with the first vector is carried out
after the transfecting with the second vector.
52. The method of claim 46, wherein the method comprises
transfecting the cell with the first vector and the second vector,
and wherein the transfecting the cell with the first vector is
carried out simultaneously with the transfecting the cell with the
second vector.
53. The method of claim 47, wherein the method comprises
transfecting the cell with the first vector and the second vector,
and wherein the transfecting the cell with the first vector is
carried out simultaneously with the transfecting the cell with the
second vector.
54. The method of claim 48, wherein the method comprises
transfecting the cell with the first vector and the second vector,
and wherein the transfecting the cell with the first vector is
carried out simultaneously with the transfecting the cell with the
second vector.
55. The method of claim 43, further comprising culturing the cell
in the presence of a 3-KSR inhibitor after transfecting the cell
with (i).
56. The method of claim 43, further comprising culturing the cell
in the absence of at exogenously introduced cholesterol after
transfecting with (i).
57. The method of claim 43, further comprising culturing the cell n
the presence of an aminoglycosidic antibiotic after transfecting
the cell with (ii).
58. The method of claim 52, comprising culturing the cell in the
absence of an exogenously introduced cholesterol and in the
presence of an aminoglycosidic antibiotic after simultaneously
transfecting the cell with the first vector and the second
vector.
59. The method of claim 53, comprising culturing the cell in the
absence of an exogenously introduced cholesterol and in the
presence of an aminoglycosidic antibiotic after simultaneously
transfecting the cell with the first vector and the second
vector.
60. The method of claim 54, comprising culturing the cell in the
absence of an exogenously introduced cholesterol and in the
presence of an aminoglycosidic antibiotic after simultaneously
transfecting the cell with the first vector and the second
vector.
61. The method of claim 43, wherein the nucleic acid encoding the
therapeutic protein comprises a nucleic acid encoding a heavy chain
and a light chain of an antibody.
62. The method of claim 61, wherein the antibody is selected from
the group consisting of: adalimumab, infiliximab, palivizumab,
cetuximab, natalizumab, eculizumab, ustekinumab, golimumab,
ofatumab, canakinumab, belimumab, alirocumab, mepolizumab,
necitumumab, nivolumab, dinutuximab, secukinumab, evolocumab,
blinatumomab, pembrolizumab, ramucirumab, vedolizumab, siltuximab,
obinutuzumab, trastuzumab, raxibacumab, pertuzumab, brentuximab,
ipilimumab, denosumab, tocilizumab, ofatumumab, canakinumab,
certolizumab, catumaxomab, ranibizumab, panitumumab, bevacizumab,
cetuximab, efalizumab, omalizumab, tositumomab, ibritumomab,
alemtuzumab, gemtuzumab, basiliximab, daclizumab, rituximab,
abciximab, alefacept, entanercept, abatacept, belatacept,
aflibercept, ziv-aflibercept, rilonacept, romiplostim, apocept,
trebananib, blisibimod, and dulaglutide.
63. The method of claim 43, wherein the therapeutic protein is
selected from the group consisting of: an antibody, a fusion
protein, an anticoagulant, a blood factor, a bone morphogenic
protein, an engineered protein scaffold, an enzyme, a growth
factor, a hormone, a hormone releasing factor, an interleukin, or a
thrombolytic protein and the method comprises transfecting the cell
with a nucleic acid encoding an antibody, a fusion protein, an
anticoagulant, a blood factor, a bone morphogenic protein, an
engineered protein scaffold, an enzyme, a growth factor, a hormone,
a hormone releasing factor, an interferon, an interleukin, and a
thrombolytic protein.
64. The method of claim 43, wherein the cell is an NS0 cell.
65. A transformed mammalian host cell, transfected with an
aminoglycosidic antibiotic resistance gene, and a nucleic acid
encoding a therapeutic protein, wherein the transformed mammalian
host cell is derived from a parental mammalian host cell that is
cholesterol-auxotrophic.
66. A therapeutic protein produced by a method comprising culturing
the transformed mammalian host cell of claim 65, in the presence of
an aminoglycosidic antibiotic.
Description
CROSS-REFERENCE
[0001] This application is a continuation of U.S. application Ser.
No. 15/570,178, filed on Oct. 27, 2017, which is a U.S. National
Stage Entry of PCT/US2016/029472, filed Apr. 27, 2016, which claims
benefit of U.S. Provisional Patent Application No. 62/153,178 filed
on Apr. 27, 2015.
SEQUENCE LISTING
[0002] The instant application contains a Sequence Listing which
has been submitted electronically in ASCII format and is hereby
incorporated by reference in its entirety. Said ASCII copy, created
on Jul. 1, 2020, is named 53744_701_301_SEQUENCE LISTING and is
26,682 bytes in size.
BACKGROUND OF THE INVENTION
[0003] The production of therapeutic proteins using mammalian cell
expression systems is of growing importance within the
biotechnology industry. Various culture and transfection systems
have been described, but each has significant limitations.
SUMMARY OF THE INVENTION
[0004] The invention described herein is based, in part, on the
discovery that the combination of cholesterol-auxotrophic cells
with one or more additional selection markers can be exploited in
methods of manufacturing therapeutic proteins, to avoid unexpected
manufacturing complications associated with cholesterol-auxotrophic
cells (e.g., low productivity). In one aspect, the disclosure
features methods of manufacturing a therapeutic protein, the method
comprising: culturing a cholesterol-auxotrophic and
glutamine-auxotrophic cell; transfecting the cell with (i) a
nucleic acid encoding a protein which is capable of restoring
cholesterol biosynthesis in the cell; (ii) a nucleic acid encoding
a protein which is capable of restoring glutamine biosynthesis in
the cell; and (iii) a nucleic acid encoding the therapeutic
protein; culturing the cell under conditions suitable for
expression of the therapeutic protein; and isolating and/or
purifying the therapeutic protein.
[0005] In one embodiment, the cell is an NS0 cell.
[0006] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0007] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes a glutamine synthetase.
[0008] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0009] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., after transfection of nucleic acid (ii)) in the absence of
exogenously introduced glutamine. In some embodiments, the cell is
cultured (e.g., during and/or after transfection of nucleic acid
(ii)) in the presence of a glutamine synthetase inhibitor (e.g.,
methionine sulfoximine). In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (i)) in the
presence of a 3-ketosteriod reductase inhibitor.
[0010] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol and in the absence of
exogenously introduced glutamine. In some embodiments, the cell is
cultured in absence of exogenously introduced cholesterol, in the
absence of exogenously introduced glutamine, and in the presence of
a glutamine synthetase inhibitor (e.g., methionine sulfoximine). In
some embodiments, the cell is cultured (e.g., after transfection of
nucleic acid (i)) in the absence of exogenously introduced
cholesterol and the cell is cultured (e.g., after transfection of
nucleic acid (ii)) in the absence of exogenously introduced
glutamine.
[0011] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell; transfecting the cell
with (i) a nucleic acid encoding a protein which is capable of
restoring cholesterol biosynthesis in the cell; (ii) a nucleic acid
encoding a protein expressing one or more selectable marker; and
(iii) a nucleic acid encoding the therapeutic protein; culturing
the cell under conditions suitable for expression of the
therapeutic protein; and isolating and/or purifying the therapeutic
protein.
[0012] In one embodiment, the cell is an NS0 cell.
[0013] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0014] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain.
[0015] In some embodiments, nucleic acid (i) encodes a
3-ketosteroid reductase.
[0016] In some embodiments, the nucleic acid (ii) encodes a
glutamine synthetase, a dihydrofolate reductase (DHFR), or one or
more antibiotic resistance gene (e.g., neomycin, blasticidin,
hygromyocin, puromycin, zeocin, mycophenolic acid).
[0017] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0018] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (i)) in the
presence of a 3-ketosteriod reductase inhibitor. In some
embodiments, the cell is cultured in absence of exogenously
introduced cholesterol.
[0019] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that does not express a
functional dihydrofolate reductase (DHFR); transfecting the cell
with (i) a nucleic acid encoding a protein which is capable of
restoring cholesterol biosynthesis in the cell; (ii) a nucleic acid
encoding a DHFR; and (iii) a nucleic acid encoding the therapeutic
protein; culturing the cell under conditions suitable for
expression of the therapeutic protein; and isolating and/or
purifying the therapeutic protein.
[0020] In one embodiment, the cell is an NS0 cell.
[0021] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0022] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase.
[0023] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0024] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of a DHFR inhibitor (e.g., methionine sulphoximine
(MSX)). In some embodiments, the cell is cultured (e.g., during
and/or after transfection of nucleic acid (i)) in the presence of a
3-ketosteriod reductase inhibitor.
[0025] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of a DHFR inhibitor (e.g., methionine sulphoximine
(MSX)).
[0026] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
neomycin; transfecting the cell with (i) a nucleic acid encoding a
protein which is capable of restoring cholesterol biosynthesis in
the cell; (ii) a nucleic acid encoding a neomycin resistance gene;
and (iii) a nucleic acid encoding the therapeutic protein;
culturing the cell under conditions suitable for expression of the
therapeutic protein; and isolating and/or purifying the therapeutic
protein.
[0027] In one embodiment, the cell is an NS0 cell.
[0028] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0029] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes the neomycin resistance gene from Tn5
encoding an aminoglycoside 3'-phosphotransferase (APH 3' II).
[0030] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0031] In some embodiments, both the first and second expression
vector contains HC and LC one vector contains KSR and the other
vector contains GS or another antibiotic resistant gene. In some
embodiments, there are three separate vectors (e.g., for triple
selection), wherein all three vectors contains HC and LC; a first
vector contains KSR, a second vector contains GS, and a third
vector contains any antibiotic resistant gene, e.g. NEO.
[0032] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of an aminoglycoside antibiotic (e.g., G418). In some
embodiments, the cell is cultured (e.g., during and/or after
transfection of nucleic acid (i)) in the presence of a
3-ketosteriod reductase inhibitor.
[0033] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of an aminoglycoside antibiotic (e.g., G418).
[0034] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
blasticidin; transfecting the cell with (i) a nucleic acid encoding
a protein which is capable of restoring cholesterol biosynthesis in
the cell; (ii) a nucleic acid encoding a blasticidin resistance
gene; and (iii) a nucleic acid encoding the therapeutic protein;
culturing the cell under conditions suitable for expression of the
therapeutic protein; and isolating and/or purifying the therapeutic
protein.
[0035] In one embodiment, the cell is an NS0 cell.
[0036] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0037] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes the blasticidin resistance gene from
Bacillus cereus (which codes for blasticidin-S deaminase).
[0038] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0039] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of a peptidyl nucleoside antibiotic (e.g.,
blasticidin). In some embodiments, the cell is cultured (e.g.,
during and/or after transfection of nucleic acid (i)) in the
presence of a 3-ketosteriod reductase inhibitor.
[0040] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of a peptidyl nucleoside antibiotic an aminoglycoside
antibiotic (e.g., blasticidin).
[0041] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
hygromycin B; transfecting the cell with (i) a nucleic acid
encoding a protein which is capable of restoring cholesterol
biosynthesis in the cell; (ii) a nucleic acid encoding a hygromycin
B resistance gene; and (iii) a nucleic acid encoding the
therapeutic protein; culturing the cell under conditions suitable
for expression of the therapeutic protein; and isolating and/or
purifying the therapeutic protein.
[0042] In one embodiment, the cell is an NS0 cell.
[0043] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0044] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes a hygromycin B
phosphotransferase.
[0045] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0046] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of an aminoglycoside antibiotic (e.g., hygromycin B).
In some embodiments, the cell is cultured (e.g., during and/or
after transfection of nucleic acid (i)) in the presence of a
3-ketosteriod reductase inhibitor.
[0047] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of a peptidyl nucleoside antibiotic an aminoglycoside
antibiotic (e.g., hygromycin B).
[0048] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
puromycin; transfecting the cell with (i) a nucleic acid encoding a
protein which is capable of restoring cholesterol biosynthesis in
the cell; (ii) a nucleic acid encoding a puromycin resistance gene;
and (iii) a nucleic acid encoding the therapeutic protein;
culturing the cell under conditions suitable for expression of the
therapeutic protein; and isolating and/or purifying the therapeutic
protein.
[0049] In one embodiment, the cell is an NS0 cell.
[0050] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0051] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes a puromycin N-acetyl-transferase.
[0052] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0053] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of an aminonucleoside antibiotic (e.g., puromycin). In
some embodiments, the cell is cultured (e.g., during and/or after
transfection of nucleic acid (i)) in the presence of a
3-ketosteriod reductase inhibitor.
[0054] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of a peptidyl nucleoside antibiotic an aminonucleoside
antibiotic (e.g., puromycin).
[0055] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
zeocin; transfecting the cell with (i) a nucleic acid encoding a
protein which is capable of restoring cholesterol biosynthesis in
the cell; (ii) a nucleic acid encoding a zeocin resistance gene;
and (iii) a nucleic acid encoding the therapeutic protein;
culturing the cell under conditions suitable for expression of the
therapeutic protein; and isolating and/or purifying the therapeutic
protein.
[0056] In one embodiment, the cell is an NS0 cell.
[0057] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0058] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes a Sh ble gene product.
[0059] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0060] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of a copper-chelated glycopeptide antibiotic (e.g.,
zeocin). In some embodiments, the cell is cultured (e.g., during
and/or after transfection of nucleic acid (i)) in the presence of a
3-ketosteriod reductase inhibitor. In some embodiments, the cell is
cultured in absence of exogenously introduced cholesterol. In some
embodiments, the cell is cultured in absence of exogenously
introduced cholesterol and in the presence of a copper-chelated
glycopeptide antibiotic (e.g., zeocin).
[0061] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
mycophenolic Acid (MPA); transfecting the cell with (i) a nucleic
acid encoding a protein which is capable of restoring cholesterol
biosynthesis in the cell; (ii) a nucleic acid encoding a MPA
resistance gene; and (iii) a nucleic acid encoding the therapeutic
protein; culturing the cell under conditions suitable for
expression of the therapeutic protein; and isolating and/or
purifying the therapeutic protein.
[0062] In one embodiment, the cell is an NS0 cell.
[0063] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0064] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes the xanthine-guanine
phosphoribosyltransferase (Ecogpt) gene.
[0065] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0066] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of MPA. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (i)) in the
presence of a 3-ketosteriod reductase inhibitor.
[0067] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of MPA.
[0068] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic cell that is sensitive to
mycophenolic acid (MPA); transfecting the cell with (i) a nucleic
acid encoding a protein which is capable of restoring cholesterol
biosynthesis in the cell; (ii) a nucleic acid encoding a MPA
resistance gene; and (iii) a nucleic acid encoding the therapeutic
protein; culturing the cell under conditions suitable for
expression of the therapeutic protein; and isolating and/or
purifying the therapeutic protein.
[0069] In one embodiment, the cell is an NS0 cell.
[0070] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0071] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iii) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes the xanthine-guanine
phosphoribosyltransferase (Ecogpt) gene.
[0072] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iii), and a second expression vector
comprises nucleic acids (ii). In some embodiments, a first
expression vector comprises nucleic acid (i), and a second
expression vector comprises nucleic acids (ii) and (iii). In some
embodiments, transfection of the first expression vector is
performed prior to transfection of the second expression vector. In
some embodiments, transfection of the first expression vector is
performed simultaneously with transfection of the second expression
vector.
[0073] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (ii)) in
the presence of MPA. In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (i)) in the
presence of a 3-ketosteriod reductase inhibitor.
[0074] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol. In some embodiments, the cell
is cultured in absence of exogenously introduced cholesterol and in
the presence of MPA.
[0075] In one aspect, the disclosure features methods of
manufacturing a therapeutic protein, the method comprising:
culturing a cholesterol-auxotrophic and glutamine-auxotrophic cell;
transfecting the cell with (i) a nucleic acid encoding a protein
which is capable of restoring cholesterol biosynthesis in the cell
(e.g., KSR); (ii) a nucleic acid encoding a protein which is
capable of restoring glutamine biosynthesis in the cell (e.g.,
glutathione synthetase); (iii) a nucleic acid encoding a protein
which is capable of providing resistance to G418 (e.g., neomycin
resistance gene); and (iv) a nucleic acid encoding the therapeutic
protein (e.g., an antibody, e.g., a heavy chain and light chain);
culturing the cell under conditions suitable for expression of the
therapeutic protein; and isolating and/or purifying the therapeutic
protein.
[0076] In some embodiments, nucleic acid (iii) is transfected first
and during and/post transfection G418 is added to the cell culture
media. In some embodiments, nucleic acid (iii) is transfected first
and during and/or post transfection G418 is added to the cell
culture media; and nucleic acid (ii) is transfected second and
during and/or post transfection cholesterol is absent from the cell
culture media. In some embodiments, nucleic acid (iii) is
transfected first and during and/or post transfection G418 is added
to the cell culture media; and nucleic acid (ii) is transfected
second and during and/or post transfection cholesterol is absent
from the cell culture media (e.g., exogenously added cholesterol);
and nucleic acid (i) is transfected third and during/post
transfection glutamine is absent from the cell culture medium
(e.g., exogenously added glutamine) (optionally methionine
sulphoximine (MSX) is added to the cell culture media).
[0077] In some embodiments, nucleic acid (ii) and (i) are
transfected simultaneously, wherein G418 is added to the cell
culture media and the cell culture media does not contain
cholesterol (e.g., exogenously added cholesterol). In some
embodiments, nucleic acids (i), (ii), (iii), and (iv) are
transfected simultaneously, wherein the G418 is added to the cell
culture media and the cell culture media does not contain
cholesterol (e.g., exogenously added cholesterol) and does not
contain glutamine (e.g., exogenously added glutamine) (optionally
methionine sulphoximine (MSX) is added to the cell culture media).
In some embodiments, nucleic acid (iv) is incorporated in the same
nucleic acid sequence (e.g., vector) as each of (i), (ii), and
(iii). In some embodiments, nucleic acid (iv) is incorporated in
the same nucleic acid sequence (e.g., vector) as each of (i) and
(ii); (i) and (iii); or (ii) and (iii). In some embodiments,
nucleic acid (iv) encodes the heavy and light chain of a
therapeutic antibody. In some embodiments, the light chain is
incorporated in the same nucleic acid sequence (e.g., vector) as
each of (i) and (ii); (i) and (iii); (ii) and (iii); or (i), (ii),
and (iii). In some embodiments, the heavy chain is incorporated in
the same nucleic acid sequence (e.g., vector) as each of (i) and
(ii); (i) and (iii); (ii) and (iii); or (i), (ii), and (iii). In
some embodiments, the light chain and heavy chain is incorporated
in the same nucleic acid sequence (e.g., vector) as each of (i) and
(ii); (i) and (iii); (ii) and (iii); or (i), (ii), and (iii).
[0078] In some embodiments, any of nucleic acids (i), (ii), (iii),
and (iv) are incorporated into a single nucleic acid (e.g., single
vector). For example, in some embodiments, nucleic acids (i) and
(ii); (i) and (iii); (i) and (iv); (i), (ii), and (iii); (i), (ii),
(iii), and (iv); (ii) and (iii); or (ii) and (iv); (iii) and (iv);
are incorporated on a single nucleic acid. In some embodiments,
nucleic acid (iv) comprises two separate nucleic acids, one
encoding a heavy chain and one encoding a light chain of a
therapeutic antibody. In some embodiments the heavy chain is
incorporated onto another nucleic acid, e.g., (i), (ii), or (iii).
In some embodiments the light chain is incorporated onto another
nucleic acid, e.g., (i), (ii), or (iii).
[0079] In one embodiment, the cell is an NS0 cell.
[0080] In some embodiments, the therapeutic protein is an antibody.
In some embodiments, the therapeutic protein is a fusion protein.
In some embodiments, the therapeutic protein is an Fc-containing
fusion protein.
[0081] In some embodiments, in the transfecting step the cell is
transfected with nucleic acids (iv) encoding an antibody light
chain and an antibody heavy chain. In some embodiments, nucleic
acid (i) encodes a 3-ketosteroid reductase. In some embodiments,
the nucleic acid (ii) encodes a glutamine synthetase. In some
embodiments, the nucleic acid (iii) encodes neomycin resistance
gene.
[0082] In some embodiments, a first expression vector comprises
nucleic acid (i) and (iv), and a second expression vector comprises
nucleic acids (ii). In some embodiments, a first expression vector
comprises nucleic acid (i), and a second expression vector
comprises nucleic acids (ii) and (iv). In some embodiments,
transfection of the first expression vector is performed prior to
transfection of the second expression vector. In some embodiments,
transfection of the first expression vector is performed
simultaneously with transfection of the second expression
vector.
[0083] In some embodiments, the cell is cultured (e.g., after
transfection of nucleic acid (i)) in the absence of exogenously
introduced cholesterol. In some embodiments, the cell is cultured
(e.g., after transfection of nucleic acid (ii)) in the absence of
exogenously introduced glutamine. In some embodiments, the cell is
cultured (e.g., during and/or after transfection of nucleic acid
(ii)) in the presence of a glutamine synthetase inhibitor (e.g.,
methionine sulfoximine). In some embodiments, the cell is cultured
(e.g., during and/or after transfection of nucleic acid (i)) in the
presence of a 3-ketosteriod reductase inhibitor.
[0084] In some embodiments, the cell is cultured in absence of
exogenously introduced cholesterol and in the absence of
exogenously introduced glutamine. In some embodiments, the cell is
cultured in absence of exogenously introduced cholesterol, in the
absence of exogenously introduced glutamine, and in the presence of
a glutamine synthetase inhibitor (e.g., methionine sulfoximine). In
some embodiments, the cell is cultured (e.g., after transfection of
nucleic acid (i)) in the absence of exogenously introduced
cholesterol and the cell is cultured (e.g., after transfection of
nucleic acid (ii)) in the absence of exogenously introduced
glutamine.
BRIEF DESCRIPTION OF THE FIGURES
[0085] FIG. 1 depicts an exemplary protocol of the methods
described herein.
[0086] FIG. 2 depicts the NCBI reference amino acid sequence of
3-ketosteroid reductase (NP_057455) (SEQ ID No. 1).
[0087] FIG. 3 depicts the NCBI reference mRNA sequence of
HSD17.beta.7 (NM_016371.3) (SEQ ID No. 2).
[0088] FIG. 4 depicts the NCBI reference amino acid sequence of
glutamine synthetase (NP_002056.2) (SEQ ID No. 3).
[0089] FIG. 5A-E depicts the NCBI reference mRNA sequence of
glutamine synthetase (NM_002065.6) (SEQ ID No. 4).
[0090] FIG. 6 depicts the NCBI reference amino acid sequence of
dihydrofolate reductase (DHFR) (NP_000782.1) (SEQ ID No. 5).
[0091] FIG. 7A-B depicts the NCBI reference mRNA sequence of DHFR
(NM_000791.3) (SEQ ID No. 6).
[0092] FIG. 8 depicts the stability of proteins produced using the
3-KSR cell culture system. FIG. 8 lists the final protein titer in
the supernatant of 3-KSR cells for 10 different 3-KSR cell clones.
Four clones (3-261, 3-330, 3-351, 3-497) demonstrated high protein
titer. However, as further shown in FIG. 8 3-KSR clone 3-351,
demonstrated a decline in cell specific productivity.
[0093] FIG. 9 is a line graph depicting cell selection using Neo
(100 .mu.g/ml or 200 .mu.g/ml G418). The graph depicts the cell
viability versus days post recovery.
[0094] FIG. 10 is a line graph depicting cell selection using
glutathione synthetase (GS) (reduce glutamine concentration from 2
mM to 0 mM or from 0.5 mM to 0 mM respectively). The graph depicts
the cell viability versus days post recovery.
[0095] FIG. 11 is a line graph depicting cell selection using
3-KSR, neo, and GS as a triple selection. The graph depicts the
cell viability versus days post recovery. Resistance to G418 can be
conferred by neo gene. The concentration of G418 in NS0 is 100
ug/ml and 200 ug/ml; reduce glutamine concentration from 2 mM to 0
mM, or from 0.5 mM to 0 mM. An MSX inhibitor may also be used to
inhibit the GS activity.
DETAILED DESCRIPTION OF THE INVENTION
[0096] In certain recombinant protein production systems, such as
NS0 host cell systems, cholesterol-auxotrophy is exploited by
incorporating a 3-ketosteroid reductase (3-KSR) gene into the
vector encoding the therapeutic protein, and recombinant cells
selected for by removing cholesterol from the culture media
(US20100028940). However, the inventors of the present disclosure
unexpectedly found that this system can suffer from low
productivity (e.g., protein product per cell per day) and low
protein titers due to the difficulty of amplification in this cell
line (see e.g., FIG. 8). In other NS0 host cell systems,
glutamine-auxotrophy is exploited by incorporating a glutamine
synthetase (GS) gene into the vector encoding the therapeutic
protein, and transfected cells are selected for by removing
glutamine from the culture media. In addition, a GS inhibitor can
be added to the culture media to drive selection towards the
incorporation multiple copies of the GS gene and therefore the gene
encoding the protein of interest (Barnes et al. Cytotechnology.
2000. Advances in animal cell recombinant protein production:
GS-NS0 expression system February; 32(2):109-23). Each system has
different limitations. Described herein are alternate methods of
manufacturing therapeutic products in, e.g., an NS0 host cell
system.
[0097] A "glutamine-auxotrophic" cell as used herein is defined as
a cell which does not synthesize any glutamine or does not
synthesize enough glutamine to be capable of survival and growth in
glutamine-free cell culture medium.
[0098] A "cholesterol-auxotrophic" cell as used herein is defined
as a cell which does not synthesize any cholesterol or does not
synthesize enough cholesterol to be capable of survival and growth
in cholesterol-free cell culture medium.
[0099] "Restoring glutamine biosynthesis" as used herein means
increasing the level of glutamine biosynthesis in a cell (from the
level in a glutamine-auxotrophic cell), to at least a level which
enables the cell to survive and grow in glutamine-free cell culture
medium.
[0100] "Restoring cholesterol biosynthesis" as used herein means
increasing the level of cholesterol biosynthesis in a cell (from
the level in a cholesterol-auxotrophic cell), to at least a level
which enables the cell to survive and grow in cholesterol-free cell
culture medium.
[0101] "Survive and grow" or "survival and growth" as used herein
refers to the ability of a cell or culture of cells to maintain
greater than 60% cell viability during log phase growth as measured
by trypan blue exclusion.
3-Ketosteroid Reductase (KSR)
[0102] The enzyme 3-ketosteroid reductase is encoded by the
HSD17.beta.7 gene, and functions as a 3-ketosteroid reductase in
the biosynthesis of cholesterol (Marijanovic et al., Mol
Endocrinol. 2003 September; 17(9):1715-25). See FIG. 2 (SEQ ID No.
1) and FIG. 3 (SEQ ID No. 2) respectively, for NCBI reference amino
acid (NP_057455) and mRNA sequence (NM_016371.3).
Glutamine Synthetase (GS)
[0103] The enzyme glutamine synthetase encoded by the glutamine
synthetase gene catalyzes the synthesis of glutamine from glutamate
and ammonia (Eisenberg et al., Biochimica et Biophysica Acta, 2000,
Vol 1477, 122-145). Several alternatively spliced transcript
variants have been found for this gene. See FIG. 4 (SEQ ID No. 3)
and FIG. 5 (SEQ ID No. 4) respectively, for NCBI reference amino
acid NP_002056.2 and mRNA sequence NM_002065.6.
Dihydrofolate Reductase (DHFR)
[0104] The enzyme DHFR is encoded by the DHFR gene, and converts
dihydrofolate into tetrahydrofolate, a methyl group shuttle
required for the de novo synthesis of purines, thymidylic acid, and
certain amino acids. Several alternatively spliced transcript
variants have been found for this gene. See FIG. 6 (SEQ ID No. 5)
and FIG. 7 (SEQ ID No. 6) respectively, for NCBI reference amino
acid (NP_000782.1) and mRNA sequence (NM_000791.3).
Antibiotic Resistance Gene Selection Markers
[0105] Antibiotic resistance genes are commonly used positive
selection markers used in mammalian cell culture (see e.g.,
Antibody Expression and Production, Editor Mohamed Al-Rubeai,
Springer Netherlands, Springer Science Business Media B.V., ISBN
978-94-007-1256-0; Cell Line Development, Mohamed Al-Rubeai Aug.
11, 2009 Springer Science & Business Media). Exemplary
antibiotic resistance genes include but are not limited to genes
conferring resistance to neomycin resistance gene, blasticidin,
hygromyocin, puromycin, zeocin, mycophenolic acid. Suitable
antibiotic resistance genes and corresponding inhibitors for use in
cell selection would be known to one of skill in the art.
TABLE-US-00001 TABLE 1 Exemplary Antibiotic Selection Markers
Antibiotic Mechanism of Action Resistance Gene Hygromycin
Hygromycin B is an The hph gene. B aminoglycoside antibiotic
produced by Streptomyces hygroscopicus. Hygromycin B inhibits
protein synthesis. It has been reported to interfere with
translocation and to cause mistranslation at the 70S ribosome.
Zeocin .RTM. Zeocin .RTM. is a copper-chelated The Sh ble gene.
glycopeptide antibiotic produced by Streptomyces CL990. Zeocin .TM.
causes cell death by intercalating into DNA and cleaving it.
Blasticidin Blasticidin is a peptidyl nucleoside The blasticidin
antibiotic isolated from resistance gene Streptomyces
griseochromogenes from Bacillus that inhibits protein synthesis by
cereus (bsr), which interfering with the peptide-bond codes for
blasticidin- formation in the ribosomal S deaminase. machinery.
Puromycin Puromycin is an aminonucleoside The Pac gene encoding
antibiotic produced by a puromycin N-acetyl- Streptomyces
alboniger. It transferase (PAC) that specifically inhibits peptidyl
was found in a transfer on both prokaryotic and Streptomyces
producer eukaryotic ribosomes. strain. Geneticin G418 (Geneticin)
is an The Neomycin aminoglycoside antibiotic similar resistance
gene in structure to gentamicin B1, (neo) from Tn5 produced by
Micromonospora encoding an rhodorangea. G418 blocks aminoglycoside
3'- polypeptide synthesis by inhibiting phosphotransferase, the
elongation step in both APH 3' II. prokaryotic and eukaryotic
cells. Phleomycin Phleomycin is a glycopeptide The Sh ble gene from
antibiotic of the bleomycin family, Streptoalloteichus isolated
from a mutant strain of hindustanus which Streptomyces verticillus.
It binds encodes a protein that and intercalates DNA thus binds to
phleomycin, destroying the integrity of the inhibiting its DNA
double helix. cleavage activity.
Vectors, Host Cells, and Therapeutic Protein Production
[0106] The therapeutic proteins of the invention can be produced
from a host cell. A host cell refers to a vehicle that includes the
necessary cellular components, e.g., organelles, needed to express
the polypeptides and constructs described herein from their
corresponding nucleic acids. The nucleic acids may be included in
nucleic acid vectors that can be introduced into the host cell by
conventional techniques known in the art (e.g., transformation,
transfection, electroporation, calcium phosphate precipitation,
direct microinjection, infection, etc). The choice of nucleic acid
vectors depends in part on the host cells to be used. Generally,
preferred host cells are of either prokaryotic (e.g., bacterial) or
eukaryotic (e.g., mammalian) origin.
[0107] Nucleic Acid Vector Construction and Host Cells
[0108] A nucleic acid sequence encoding the amino acid sequence of
a therapeutic protein of the invention may be prepared by a variety
of methods known in the art. These methods include, but are not
limited to, oligonucleotide-mediated (or site-directed) mutagenesis
and PCR mutagenesis. A nucleic acid molecule encoding a therapeutic
protein of the invention may be obtained using standard techniques,
e.g., gene synthesis. Alternatively, a nucleic acid molecule
encoding a wild-type therapeutic protein may be mutated to contain
specific amino acid substitutions using standard techniques in the
art, e.g., QuikChange.TM. mutagenesis. Nucleic acid molecules can
be synthesized using a nucleotide synthesizer or PCR
techniques.
[0109] Nucleic acid sequences encoding a therapeutic protein of the
invention may be inserted into a vector capable of replicating and
expressing the nucleic acid molecules in prokaryotic or eukaryotic
host cells. Many vectors are available in the art and can be used
for the purpose of the invention. Each vector may contain various
components that may be adjusted and optimized for compatibility
with the particular host cell. For example, the vector components
may include, but are not limited to, an origin of replication, a
selection marker gene, a promoter, a ribosome binding site, a
signal sequence, the nucleic acid sequence encoding protein of
interest, and a transcription termination sequence.
[0110] In one example, vectors of the invention include: a vector
comprising a weak promoter for a selection gene (e.g.,
3-ketosteroid reductase and glutamine synthetase) and a strong
promoter for the gene encoding the protein of interest (e.g., an
antibody, e.g., heavy and light chain of an antibody). Vectors can
be linearized or supercoiled exhibiting improved transfection
efficiency. In some embodiments, codon optimization of the vector
is employed to minimize the use of rare codons in the coding
sequence and improve protein production yields. Exemplary vectors
of the invention are described in Wurm (2004) Nature Biotechnology,
Vol 22; Issue 11: 1393-1398).
[0111] In some embodiments, mammalian cells are used as host cells
for the invention. The glutamine-auxotrophic and
cholesterol-auxotrophic phenotype can be induced by genetic
manipulation of a non-glutamine-auxotrophic and
non-cholesterol-auxotrophic cell, including for example mutation or
deletion of a gene necessary for endogenous glutamine biosynthesis,
such as glutamine synthetase. Common methods of genetic engineering
are well known to those of skill in the art, e.g., site directed
mutagenesis, zinc finger nucleases, shRNA, transposons, See e.g.,
Cytotechnology. 2007 April; 53(1-3): 65-73. The murine myeloma
cells termed NS0 are known glutamine-auxotrophic and
cholesterol-auxotrophic cells (See e.g., Barnes et al.
Cytotechnology. 2000. Advances in animal cell recombinant protein
production: GS-NS0 expression system February; 32(2):109-23; and US
20100028940).
[0112] Additional examples of mammalian cell types which may be
manipulated to be used as host cells include, but are not limited
to, human embryonic kidney (HEK) (e.g., HEK293, HEK 293F), Chinese
hamster ovary (CHO), HeLa, COS, PC3, Vero, MC3T3, NS0, VERY, BHK,
MDCK, W138, BT483, Hs578T, HTB2, BT20, T47D), CRL7030, and HsS78Bst
cells. In other embodiments, E. coli cells are used as host cells
for the invention. Examples of E. coli strains include, but are not
limited to, E. coli 294 (ATCC.RTM. 31,446), E. coli .lamda., 1776
(ATCC.RTM. 31,537, E. coli BL21 (DE3) (ATCC.RTM. BAA-1025), and E.
coli RV308 (ATCC.RTM. 31,608). Different host cells have
characteristic and specific mechanisms for the posttranslational
processing and modification of protein products. Appropriate cell
lines or host systems may be chosen to ensure the correct
modification and processing of the therapeutic protein expressed.
The above-described expression vectors may be introduced into
appropriate host cells using conventional techniques in the art,
e.g., transformation, transfection, electroporation, calcium
phosphate precipitation, and direct microinjection. Once the
vectors are introduced into host cells for protein production, host
cells are cultured in conventional nutrient media modified as
appropriate for inducing promoters, selecting transformants, or
amplifying the genes encoding the desired sequences. Methods for
expression of therapeutic proteins are known in the art, see, for
example, Paulina Balbas, Argelia Lorence (eds.) Recombinant Gene
Expression: Reviews and Protocols (Methods in Molecular Biology),
Humana Press; 2nd ed. 2004 (Jul. 20, 2004) and Vladimir Voynov and
Justin A. Caravella (eds.) Therapeutic Proteins: Methods and
Protocols (Methods in Molecular Biology) Humana Press; 2nd ed. 2012
(Jun. 28, 2012).
[0113] Protein Production, Recovery, and Purification
[0114] Host cells used to produce a therapeutic protein of the
invention may be grown in media known in the art and suitable for
culturing of the selected host cells. Examples of suitable media
for mammalian host cells include Minimal Essential Medium (MEM),
Dulbecco's Modified Eagle's Medium (DMEM), Expi293.TM. Expression
Medium, DMEM with supplemented fetal bovine serum (FBS), and
RPMI-1640. Examples of suitable media for bacterial host cells
include Luria broth (LB) plus necessary supplements, such as a
selection agent, e.g., ampicillin. Host cells are cultured at
suitable temperatures, such as from about 20.degree. C. to about
39.degree. C., e.g., from 25.degree. C. to about 37.degree. C.,
preferably 37.degree. C., and CO.sub.2 levels, such as 5 to 10%
(preferably 8%). The pH of the medium is generally from about 6.8
to 7.4, e.g., 7.0, depending mainly on the host organism. If an
inducible promoter is used in the expression vector of the
invention, protein expression is induced under conditions suitable
for the activation of the promoter. Conventional cell culture
conditions for production of a therapeutic protein are known in the
art, e.g., see Butler, Cell Culture and Upstream Processing, Taylor
& Francis; 1st edition (May 25, 2007).
[0115] Protein recovery typically involves disrupting the host
cell, generally by such means as osmotic shock, sonication, or
lysis. Once the cells are disrupted, cell debris may be removed by
centrifugation or filtration. The proteins may be further purified.
An antibody of the invention may be purified by any method known in
the art of protein purification, for example, by protein A
affinity, other chromatography (e.g., ion exchange, affinity, and
size-exclusion column chromatography), centrifugation, differential
solubility, or by any other standard technique for the purification
of proteins. (see Process Scale Purification of Antibodies, Uwe
Gottschalk (ed.) John Wiley & Sons, Inc., 2009). In some
instances, a therapeutic protein can be conjugated to marker
sequences, such as a peptide to facilitate purification. An example
of a marker amino acid sequence is a hexa-histidine peptide
(His-tag), which binds to nickel-functionalized agarose affinity
column with micromolar affinity. Other peptide tags useful for
purification include, but are not limited to, the hemagglutinin
"HA" tag, which corresponds to an epitope derived from the
influenza hemagglutinin protein.
Pharmaceutical Compositions and Preparations
[0116] The invention features pharmaceutical compositions that
include one or more therapeutic protein described herein. In
addition to a therapeutically effective amount of the therapeutic
protein, the pharmaceutical compositions may contain one or more
pharmaceutically acceptable carriers or excipients, which can be
formulated by methods known to those skilled in the art.
[0117] Acceptable carriers and excipients in the pharmaceutical
compositions are nontoxic to recipients at the dosages and
concentrations employed. Acceptable carriers and excipients may
include buffers, antioxidants, preservatives, polymers, amino
acids, and carbohydrates. Pharmaceutical compositions of the
invention can be administered parenterally in the form of an
injectable formulation. Pharmaceutical compositions for injection
(i.e., intravenous injection) can be formulated using a sterile
solution or any pharmaceutically acceptable liquid as a vehicle.
Pharmaceutically acceptable vehicles include, but are not limited
to, sterile water, physiological saline, and cell culture media
(e.g., Dulbecco's Modified Eagle Medium (DMEM), .alpha.-Modified
Eagles Medium (.alpha.-MEM), F-12 medium). Formulation methods are
known in the art, see e.g., Banga (ed.) Therapeutic Peptides and
Proteins: Formulation, Processing and Delivery Systems (2nd ed.)
Taylor & Francis Group, CRC Press (2006).
[0118] The pharmaceutical composition may be formed in a unit dose
form as needed. The amount of active component, e.g., one or more
therapeutic protein of the invention included in the pharmaceutical
preparations is such that a suitable dose within the designated
range is provided (e.g., a dose within the range of 0.01-500 mg/kg
of body weight).
Therapeutic Proteins
[0119] Therapeutic proteins which may be made by the methods
described herein include any recombinant therapeutic protein of
interest or biosimilar thereof, including but limited to,
antibodies (e.g., monoclonal antibodies, bispecific antibodies,
multispecific antibodies), fusion proteins (e.g., Fc fusion),
anticoagulants, blood factors, bone morphogenetic proteins,
engineered protein scaffolds, enzymes, growth factors, hormones,
hormone releasing factors, interferons, interleukins, and
thrombolytics. Therapeutic proteins include both glycosylated
(e.g., proteins having at least one oligosaccharide chain) and
non-glycosylated proteins.
[0120] Exemplary monoclonal antibodies include, but are not limited
to adalimumab, infiliximab, palivizumab, cetuximab, natalizumab,
eculizumab, ustekinumab, golimumab, ofatumab, canakinumab,
belimumab, alirocumab, mepolizumab, necitumumab, nivolumab,
dinutuximab, secukinumab, evolocumab, blinatumomab, pembrolizumab,
ramucirumab, vedolizumab, siltuximab, obinutuzumab, trastuzumab,
raxibacumab, pertuzumab, brentuximab, ipilimumab, denosumab,
tocilizumab, ofatumumab, canakinumab, certolizumab, catumaxomab,
ranibizumab, panitumumab, bevacizumab, cetuximab, efalizumab,
omalizumab, tositumomab, ibritumomab, alemtuzumab, gemtuzumab,
basiliximab, daclizumab, rituximab, and abciximab.
[0121] Exemplary fusion proteins include, but are not limited to
alefacept, entanercept, abatacept, belatacept, aflibercept,
ziv-aflibercept, rilonacept, romiplostim, apocept, trebananib,
blisibimod, and dulaglutide.
OTHER EMBODIMENTS
[0122] This invention is further illustrated by the following
examples that should not be construed as limiting. The contents of
all references, patents and published patent applications cited
throughout this application are incorporated herein by
reference.
EXAMPLES
Example 1. Manufacture of Therapeutic Antibodies Utilizing a Double
Auxotrophic Cell
[0123] The following Example describes methods of manufacturing
therapeutic proteins, such as antibodies, comprising expression of
the therapeutic protein of interest in a cholesterol-auxotrophic
and glutamine-auxotrophic cell. The method desirably allows for
increased amplification and copy number of the gene of interest,
and production in the absence of cholesterol, which is highly
insoluble in aqueous solutions and very challenging to work with.
The exemplary method is further outlined in FIG. 1.
[0124] Glutamine-auxotrophic and cholesterol-auxotrophic cells,
such as NS0 cells, are transfected with a first vector comprising a
nucleic acid encoding a 3-ketosteroid reductase (3-KSR). During and
post this first transfection, the cells are maintained in
cholesterol-free culture media to select for cells which express
the first vector, thereby producing a 3-KSR expressing
glutamine-auxotrophic culture of cells. These cells are
simultaneously or subsequently transfected with a second vector
comprising a nucleic acid encoding a glutamine synthetase (GS) and
the protein of interest, e.g., the heavy and light chain of a
therapeutic antibody. During and post this second transfection, the
cells are maintained in glutamine-free cell culture media to select
for cells which express the second vector. To further select for
cells which have incorporated multiple copies of the second vector,
the cell culture media during and/or after the second transfection
is supplemented with a glutamine synthetase inhibitor such as
methionine sulfoximine (MSX). The final 3-KSR-GS antibody producing
cells can be maintained in a cholesterol-free medium, avoiding
cholesterol associated manufacturing problems, and display a high
level of productivity derived from the MSX selection.
Example 2: Cell Viability Assay
[0125] The following example describes a trypan blue assay to
determine cell viability as a proxy for cells that exhibit adequate
survival and growth.
[0126] Prepare a 0.4% solution of trypan blue in buffered isotonic
salt solution, pH 7.2 to 7.3 (i.e., phosphate-buffered saline). Add
0.1 mL of trypan blue stock solution to 1 mL of cells. Load a
hemocytometer and examine immediately under a microscope at low
magnification. Count the number of blue staining cells and the
number of total cells. Cell viability is calculated as the number
of viable cells divided by the total number of cells within the
grids on the hemocytometer. If cells take up trypan blue, they are
considered non-viable. Cell viability is at least 90% for healthy
log-phase cultures.
% viable cells=[1.00-(Number of blue cells/Number of total
cells)].times.100
The cell density of the cell line suspension can be determined
using a hemocytometer. To calculate the number of viable cells per
mL of culture, the following formula is used, correcting for the
dilution factor: Number of viable
cells.times.10E4.times.1.1=cells/mL culture.
Example 3. Manufacture of Therapeutic Antibodies Utilizing a Triple
Selection Method
[0127] The following Example describes methods of manufacturing
therapeutic proteins, such as antibodies, comprising expression of
the therapeutic protein of interest in a cholesterol- and
glutamine-auxotrophic cell with an additional third selection
mechanism, e.g., neomycin resistance gene (e.g., using G418 for
selection). The method desirably allows for increased amplification
and copy number of the gene of interest, and production in the
absence of cholesterol, which is highly insoluble in aqueous
solutions and very challenging to work with, while overcoming the
unexpected manufacturing challenges associated with the 3-KSR cell
culture selection system, including for example low
productivity.
[0128] NS0 cell selection was first optimized using both a single
neomycin selection (FIG. 9) and a single GS selection (FIG. 10).
For neomycin optimization, cells were transfected according to
standard practice with a nucleic acid vector encoding a neomycin
resistance gene. Neomycin was then added to the cell culture media
at either (100 .mu.g/ml or 200 .mu.g/ml) for selection. Cell
viability was measured at the denoted days post recovery. For GS
based selection, cells were transfected with a nucleic acid vector
encoding GS and maintained in glutamine-fee cell culture media.
Cell viability was measured at the denoted days post recovery. A
3-KSR based triple selection method was optimized using neomycin,
3-KSR, and GS selection to overcome the unexpectedly low
productivity associated with 3-KSR selection (FIG. 8). Cells were
transfected according to standard practice with one or more nucleic
acid vector encoding 3-KSR, GS, and neomycin resistance gene. For
selection, cells were maintained in the absence of glutamine and
cholesterol and in the presence of neomycin. As shown in FIG. 11,
the triple selection maintained ample cell viability post recovery.
Sequence CWU 1
1
71341PRTHomo sapiens 1Met Arg Lys Val Val Leu Ile Thr Gly Ala Ser
Ser Gly Ile Gly Leu1 5 10 15Ala Leu Cys Lys Arg Leu Leu Ala Glu Asp
Asp Glu Leu His Leu Cys 20 25 30Leu Ala Cys Arg Asn Met Ser Lys Ala
Glu Ala Val Cys Ala Ala Leu 35 40 45Leu Ala Ser His Pro Thr Ala Glu
Val Thr Ile Val Gln Val Asp Val 50 55 60Ser Asn Leu Gln Ser Val Phe
Arg Ala Ser Lys Glu Leu Lys Gln Arg65 70 75 80Phe Gln Arg Leu Asp
Cys Ile Tyr Leu Asn Ala Gly Ile Met Pro Asn 85 90 95Pro Gln Leu Asn
Ile Lys Ala Leu Phe Phe Gly Leu Phe Ser Arg Lys 100 105 110Val Ile
His Met Phe Ser Thr Ala Glu Gly Leu Leu Thr Gln Gly Asp 115 120
125Lys Ile Thr Ala Asp Gly Leu Gln Glu Val Phe Glu Thr Asn Val Phe
130 135 140Gly His Phe Ile Leu Ile Arg Glu Leu Glu Pro Leu Leu Cys
His Ser145 150 155 160Asp Asn Pro Ser Gln Leu Ile Trp Thr Ser Ser
Arg Ser Ala Arg Lys 165 170 175Ser Asn Phe Ser Leu Glu Asp Phe Gln
His Ser Lys Gly Lys Glu Pro 180 185 190Tyr Ser Ser Ser Lys Tyr Ala
Thr Asp Leu Leu Ser Val Ala Leu Asn 195 200 205Arg Asn Phe Asn Gln
Gln Gly Leu Tyr Ser Asn Val Ala Cys Pro Gly 210 215 220Thr Ala Leu
Thr Asn Leu Thr Tyr Gly Ile Leu Pro Pro Phe Ile Trp225 230 235
240Thr Leu Leu Met Pro Ala Ile Leu Leu Leu Arg Phe Phe Ala Asn Ala
245 250 255Phe Thr Leu Thr Pro Tyr Asn Gly Thr Glu Ala Leu Val Trp
Leu Phe 260 265 270His Gln Lys Pro Glu Ser Leu Asn Pro Leu Ile Lys
Tyr Leu Ser Ala 275 280 285Thr Thr Gly Phe Gly Arg Asn Tyr Ile Met
Thr Gln Lys Met Asp Leu 290 295 300Asp Glu Asp Thr Ala Glu Lys Phe
Tyr Gln Lys Leu Leu Glu Leu Glu305 310 315 320Lys His Ile Arg Val
Thr Ile Gln Lys Thr Asp Asn Gln Ala Arg Leu 325 330 335Ser Gly Ser
Cys Leu 34021537DNAHomo sapiens 2gtactctgat tggtgacggg tgaggcggcc
cgaaatcgta ggacttccga aagcagcggc 60ggcgtttgct tcactgcttg gaagtgtgag
tgcgcgaaga tgcgaaaggt ggttttgatc 120accggggcta gcagtggcat
tggcctggcc ctctgcaagc ggctgctggc ggaagatgat 180gagcttcatc
tgtgtttggc gtgcaggaac atgagcaagg cagaagctgt ctgtgctgct
240ctgctggcct ctcaccccac tgctgaggtc accattgtcc aggtggatgt
cagcaacctg 300cagtcggtct tccgggcctc caaggaactt aagcaaaggt
ttcagagatt agactgtata 360tatctaaatg ctgggatcat gcctaatcca
caactaaata tcaaagcact tttctttggc 420ctcttttcaa gaaaagtgat
tcatatgttc tccacagctg aaggcctgct gacccagggt 480gataagatca
ctgctgatgg acttcaggag gtgtttgaga ccaatgtctt tggccatttt
540atcctgattc gggaactgga gcctctcctc tgtcacagtg acaatccatc
tcagctcatc 600tggacatcat ctcgcagtgc aaggaaatct aatttcagcc
tcgaggactt ccagcacagc 660aaaggcaagg aaccctacag ctcttccaaa
tatgccactg accttttgag tgtggctttg 720aacaggaact tcaaccagca
gggtctctat tccaatgtgg cctgtccagg tacagcattg 780accaatttga
catatggaat tctgcctccg tttatatgga cgctgttgat gccggcaata
840ttgctacttc gcttttttgc aaatgcattc actttgacac catataatgg
aacagaagct 900ctggtatggc ttttccacca aaagcctgaa tctctcaatc
ctctgatcaa atatctgagt 960gccaccactg gctttggaag aaattacatt
atgacccaga agatggacct agatgaagac 1020actgctgaaa aattttatca
aaagttactg gaactggaaa agcacattag ggtcactatt 1080caaaaaacag
ataatcaggc caggctcagt ggctcatgcc tataattcca gcactttggg
1140aggccaaggc agaaggatca cttgagacca ggagttcaag accagcctga
gaaacatagt 1200gagcccttgt ctctacaaaa agaaataaaa ataatagctg
ggtgtggtgg catgcgcatg 1260tagtcccagc tactcagaag gatgaggtgg
gaggatctct tgaggctggg aggcagaggt 1320tgcagtgagc tgagattgtg
ccactgcact ccagcctggg tgacagcgag accctgtctc 1380aaaatatgta
tatatttaat atatatataa aaccagagct gacaatgaca ctctggaaca
1440ttgcatacct tctgtacatt ctggggtaca tggatttcta ctgagttgga
taatatgcat 1500ttgtaataaa ctatgaacta tgaaaaaaaa aaaaaaa
15373373PRTHomo sapiens 3Met Thr Thr Ser Ala Ser Ser His Leu Asn
Lys Gly Ile Lys Gln Val1 5 10 15Tyr Met Ser Leu Pro Gln Gly Glu Lys
Val Gln Ala Met Tyr Ile Trp 20 25 30Ile Asp Gly Thr Gly Glu Gly Leu
Arg Cys Lys Thr Arg Thr Leu Asp 35 40 45Ser Glu Pro Lys Cys Val Glu
Glu Leu Pro Glu Trp Asn Phe Asp Gly 50 55 60Ser Ser Thr Leu Gln Ser
Glu Gly Ser Asn Ser Asp Met Tyr Leu Val65 70 75 80Pro Ala Ala Met
Phe Arg Asp Pro Phe Arg Lys Asp Pro Asn Lys Leu 85 90 95Val Leu Cys
Glu Val Phe Lys Tyr Asn Arg Arg Pro Ala Glu Thr Asn 100 105 110Leu
Arg His Thr Cys Lys Arg Ile Met Asp Met Val Ser Asn Gln His 115 120
125Pro Trp Phe Gly Met Glu Gln Glu Tyr Thr Leu Met Gly Thr Asp Gly
130 135 140His Pro Phe Gly Trp Pro Ser Asn Gly Phe Pro Gly Pro Gln
Gly Pro145 150 155 160Tyr Tyr Cys Gly Val Gly Ala Asp Arg Ala Tyr
Gly Arg Asp Ile Val 165 170 175Glu Ala His Tyr Arg Ala Cys Leu Tyr
Ala Gly Val Lys Ile Ala Gly 180 185 190Thr Asn Ala Glu Val Met Pro
Ala Gln Trp Glu Phe Gln Ile Gly Pro 195 200 205Cys Glu Gly Ile Ser
Met Gly Asp His Leu Trp Val Ala Arg Phe Ile 210 215 220Leu His Arg
Val Cys Glu Asp Phe Gly Val Ile Ala Thr Phe Asp Pro225 230 235
240Lys Pro Ile Pro Gly Asn Trp Asn Gly Ala Gly Cys His Thr Asn Phe
245 250 255Ser Thr Lys Ala Met Arg Glu Glu Asn Gly Leu Lys Tyr Ile
Glu Glu 260 265 270Ala Ile Glu Lys Leu Ser Lys Arg His Gln Tyr His
Ile Arg Ala Tyr 275 280 285Asp Pro Lys Gly Gly Leu Asp Asn Ala Arg
Arg Leu Thr Gly Phe His 290 295 300Glu Thr Ser Asn Ile Asn Asp Phe
Ser Ala Gly Val Ala Asn Arg Ser305 310 315 320Ala Ser Ile Arg Ile
Pro Arg Thr Val Gly Gln Glu Lys Lys Gly Tyr 325 330 335Phe Glu Asp
Arg Arg Pro Ser Ala Asn Cys Asp Pro Phe Ser Val Thr 340 345 350Glu
Ala Leu Ile Arg Thr Cys Leu Leu Asn Glu Thr Gly Asp Glu Pro 355 360
365Phe Gln Tyr Lys Asn 37048337DNAHomo sapiens 4gtaaaactat
tccccgtgaa ggcggcaggg cagaggtcca gggcgggctt tgctgggagc 60ctcgggaccc
cgggttgggg gccgtggggc ggcacctggc gagctggcgg gtgggcggcg
120agccgaggct tcccggcctg gcggcaactc gcccctctgc cctcagccct
cccggctccg 180ctcccttccc ccacgccgcc ctgcccctcc cccacgcccc
tttctctttc tttctttctt 240tcccagttcg cttgccccca ccccagcggc
gcccgccggg ctcctcgccc aatggccgcg 300gggcccggga ccgcatcagc
tgatcggccc gggctcctgg ccgctgggag ccaatcaggg 360caccgggggc
ggccccgggc cgcggataaa gggtgcgggg ctgctggcgg ctctgcagag
420tcgagagtgg gagaagagcg gagcgtgtga gcagtactgc ggcctcctct
cctctcctaa 480cctcgctctc gcggcctagc tttacccgcc cgcctgctcg
gcgaccagcg gggatcctcc 540cccagccgca agtccacgaa gaaagcaacg
aatgaaaatt atgaagacaa cgagaagtca 600gactcctccg ggtcgcgctc
cagctgcttc ggcttcgtcg cctactctgt gaactccggg 660gagagatctc
gagtcaagat taagacctta acccaccaac ctgcctgttc ggacaccccc
720cgggccggcc gctgtctgtc cccttctcca tcgccctctc ccagaaagct
ccggtgcttg 780gaccagctag agtctgagaa agaggagagg cgcgaacgcc
actccaaaaa gagaagggtt 840aaagagggca accctaacga tacgcttgac
tttctgtggc tgggaacacc ttccaccatg 900accacctcag caagttccca
cttaaataaa ggcatcaagc aggtgtacat gtccctgcct 960cagggtgaga
aagtccaggc catgtatatc tggatcgatg gtactggaga aggactgcgc
1020tgcaagaccc ggaccctgga cagtgagccc aagtgtgtgg aagagttgcc
tgagtggaat 1080ttcgatggct ctagtacttt acagtctgag ggttccaaca
gtgacatgta tctcgtgcct 1140gctgccatgt ttcgggaccc cttccgtaag
gaccctaaca agctggtgtt atgtgaagtt 1200ttcaagtaca atcgaaggcc
tgcagagacc aatttgaggc acacctgtaa acggataatg 1260gacatggtga
gcaaccagca cccctggttt ggcatggagc aggagtatac cctcatgggg
1320acagatgggc acccctttgg ttggccttcc aacggcttcc cagggcccca
gggtccatat 1380tactgtggtg tgggagcaga cagagcctat ggcagggaca
tcgtggaggc ccattaccgg 1440gcctgcttgt atgctggagt caagattgcg
gggactaatg ccgaggtcat gcctgcccag 1500tgggaatttc agattggacc
ttgtgaagga atcagcatgg gagatcatct ctgggtggcc 1560cgtttcatct
tgcatcgtgt gtgtgaagac tttggagtga tagcaacctt tgatcctaag
1620cccattcctg ggaactggaa tggtgcaggc tgccatacca acttcagcac
caaggccatg 1680cgggaggaga atggtctgaa gtacatcgag gaggccattg
agaaactaag caagcggcac 1740cagtaccaca tccgtgccta tgatcccaag
ggaggcctgg acaatgcccg acgtctaact 1800ggattccatg aaacctccaa
catcaacgac ttttctgctg gtgtagccaa tcgtagcgcc 1860agcatacgca
ttccccggac tgttggccag gagaagaagg gttactttga agatcgtcgc
1920ccctctgcca actgcgaccc cttttcggtg acagaagccc tcatccgcac
gtgtcttctc 1980aatgaaaccg gcgatgagcc cttccagtac aaaaattaag
tggactagac ctccagctgt 2040tgagcccctc ctagttcttc atcccactcc
aactcttccc cctctcccag ttgtcccgat 2100tgtaactcaa agggtggaat
atcaaggtcg tttttttcat tccatgtgcc cagttaatct 2160tgctttcttt
gtttggctgg gatagagggg tcaagttatt aatttcttca cacctaccct
2220cctttttttc cctatcactg aagcttttta gtgcattagt ggggaggagg
gtggggagac 2280ataaccactg cttccattta atggggtgca cctgtccaat
aggcgtagct atccggacag 2340agcacgtttg cagaaggggg tctcttcttc
caggtagctg aaaggggaag acctgacgta 2400ctctggttag gttaggactt
gccctcgtgg tggaaacttt tcttaaaaag ttataaccaa 2460cttttctatt
aaaagtggga attaggagag aaggtagggg ttgggaatca gagagaatgg
2520ctttggtctc ttgcttgtgg gactagcctg gcttgggact aaatgccctg
ctctgaacac 2580gaagcttagt ataaactgat ggatatccct accttgaaag
aagaaaaggt tcttactgct 2640tggtccttga tttatcacac aaagcagaat
agtattttta tatttaaatg taaagacaaa 2700aaactatatg tatggttttg
tggattatgt gtgttttgct aaaggaaaaa accatccagg 2760tcacggggca
ccaaatttga gacaaatagt cggattagaa ataaagcatc tcattttgag
2820tagagagcaa gggaagtggt tcttagatgg tgatctggga ttaggccctc
aagacccttt 2880tgggtttctg ccctgcccac cctctggaga aggtgggcac
tggattagtt aacagacaac 2940acgttactag cagtcacttg atctccgtgg
ctttggttta aaagacacac ttgtccacat 3000aggtttagag ataagagttg
gctggtcaac ttgagcatgt tactgacaga gggggtattg 3060gggttatttt
ctggtaggaa tagcatgtca ctaaagcagg ccttttgata ttaaattttt
3120taaaaagcaa aattatagaa gtttagattt taatcaaatt tgtagggttt
ctaggtaatt 3180tttacagaat tgcttgtttg cttcaactgt ctcctacctc
tgctcttgga ggagatgggg 3240acagggctgg agtcaaaaca cttgtaattt
tgtatcttga tgtctttgtt aagactgctg 3300aagaattatt ttttttcttt
tataataagg aataaacccc acctttattc cttcatttca 3360tctaccattt
tctggttctt gtgttggctg tggcaggcca gctgtggttt tcttttgcca
3420tgacaacttc taattgccat gtacagtatg ttcaaagtca aataactcct
cattgtaaac 3480aaactgtgta actgcccaaa gcagcactta taaatcagcc
taacataaga tctctctgat 3540gtgtttgtga ttctttcaaa tccctatgtg
ccattatatt tctttatttc ctaaaacagg 3600caaaataagc tcaagtttat
gtactctgag tttttaaaac actggagtga tgttgctgac 3660cagccgtttc
ctgtacctct ctaagttggg tatttgggac ttaagggatt aagtttttca
3720cctagactta gttacacaca atcttggcat ttcctagcct agaggtttgt
agcagggtac 3780aagccccact cctccccctt cctttgctcc cctgagtttg
gttttggctt accataacat 3840tgttttgacc attcctagcc taatacaata
gcctaacata atgtaagatt aactggcttt 3900acgatttcta ttctctgctc
tcagtgataa gaaacaaata ttagctaccc tgctaccctg 3960gttgaagcct
tccaaggctg gctatgccct aggcatgggc tcatccttgg gtgtatcttg
4020ccttgcagga agaccagtgg accgattgtg attctcaaaa gctctgtgtt
gtcacctgtg 4080cccttgcccc ttgctcttat cttggtccgt gtatctggga
gttcttccac cttatcttgg 4140ccaattccta ccttcgttca ttcctcatga
ggttgggtaa aagctccctc cggctcccat 4200gatgctgtgc atatacctag
caaaaagcaa ttattggaca cattggagtg caatattatt 4260aatagcatta
atactactaa taatgtgggc aatagtgatt gtttttaaaa ggcagtatac
4320tcttaccagt gcgaggtagc tggggcctgt gatagttttt agagataagt
tcttcaggca 4380actgtgtatt ttacactagt caagtaatcc tagatatccg
tggtttttct taagaaagtt 4440ggctcgtaat atgatttaat attcaaagta
gagtcatcta cctattagct tgctggcgtg 4500gtcctagttt atgcctgttt
cagcatgatt gttgagtacc ctgtttcatc cttagcattt 4560tcttgatttt
gttgttaaat gatgtatacc cttatttcca ttgaatctgt gcttccaccc
4620ccccaactga agttgtcttc cctttgcttg gccaccctta cagcctcttg
gatggtgtat 4680cctacagtgt aagcactaaa ctgaagaggc agtgacctga
gcactttgga ttttgttcat 4740tgtaatcaat tccatgacaa aatgattgca
tgagaaggaa ttttaaattc ataggatcag 4800aatttaggtg aaaacaacca
gcatatttgt ttcttcaccc tctcacctag aattagcttt 4860gacctacagg
tcacagtgca atccccttgt atttctaagg tgttttttat agttcatttg
4920cagacaatgg gttatgtgat aacttttatc agtgatagat taaacagaat
aatgaccaag 4980ctttcaacct taaggagtca ggccagtatt tacaaaagga
ggtctccatg aactccttaa 5040atatgagttc ccctaatatc atcttgccag
gtactaaata acaactgata gcacaagcta 5100tagggaattt gaaagaattc
catggatggg tgttgtctag ggccttttgt tgtttttgag 5160acggggtctg
actctcaccc aggctggagt atagtgtggc gcaatcttgg ctcactgcaa
5220cttctgcctc ccagattcaa gcgattctcc tgcctcagcc tcccaagtag
ctgagactac 5280aggtgtgcac caccatgctc agctaatttt tgtattttta
gtacagatgg ggtttcacca 5340tgttggccag gctggtcttg aactcctgat
ctcccaaagt gaggtcttga actggtcttg 5400aactcctcca cctcccaaag
tgctgggatt acaggcgtga gccactgcac ccggcctagg 5460gccatgtaaa
aagccagatc tgtgctgctg tctgtgtaga agggtagaca agtggatgag
5520aagttcctga actattcttg gcccttttac cactaagtga aagtaacttg
ctgccccaaa 5580gaaagatgtc tcatcattcg acaggacttt ctagttgaac
ttcatgaaag caagagatcc 5640tgtttttctt gctcaccact gtatcttgag
acctgttgta gtgcctgcaa tacttattta 5700ataagttatt tttaagtatc
agttttgtga gctttaactc tatgaggtct ttgttgtttg 5760actgtatttt
aactctggcc atgacagcaa gacaaagttc catttttatt gagcttaaaa
5820agaatcaagg ccaggtgaag tggcttacgc ctgtgatccc aacactttgt
gaggctgcag 5880caggaggatc tcttgagccc aggagtttga gaccgttcta
ggcaatgtag tgaggtccag 5940actccacaaa ataatttttt tttaaattgc
acgcctgtag tctcagctat caggaggctg 6000agatgggagg atgacttgag
cccaggaaat tgaagctgca gtgaattgtg attgcaccac 6060tgcactccag
cctgggtgac agatcaagac cttgcctaaa caaaacaaaa caaacaaaac
6120cccaaaaaac aaattgaaaa tgttgattct ttttactaca aacattatgg
cagcactaaa 6180aacttcgtgg gagtgtactg tggaaaatag tgtacttaat
taattctcat tgtaatcagg 6240ctaccaagag ccttgtgttg ctttaagagt
tataactgcc aggcacagtg gctcatgcct 6300ataatcccag caccttgaga
ggccgaggca ggtggatcac ctgagatcgg gagtttgaga 6360ccagccgggc
caatatggtg aaacaagctg tgtctctact aaatacaaaa aattagccgg
6420gcgtggtggc acatgcctgt aatcccagct gcttgggaga ctgagacagg
agaattgctt 6480gaacctggaa ggcggaggtt gcagtgagct gagattgcaa
cattgtactc cagcctgggc 6540aacaagaggg aaactccatc tcaaaaaaaa
aaaaaaagtt gtaactgagg ctgggcatgg 6600tggctcatac ctgtaatccc
agcactttga aaagccgagg caggtagatc acttgagctc 6660agaagttcga
gactagcctg ggcaacatga caaaacccca tctctacaaa aaatacgaaa
6720aattagctgg gcgtggtggc atgcacctgt agtcctagct acctgggagg
ctgaggtggg 6780aagattactt gaagctgcag tgagccatgg ttgtgccact
gccctccagt ctgggcaaca 6840aagtgagacc ctgtctcaaa aaaacaaaaa
aaaattataa ctgatgtaaa ctggcagttt 6900aggctgggtg tggtggctca
agcctgtaat cctagcactt tgggaggcca aggcaggtgg 6960atcacctgag
ttcaggagtt cgagaccagc gtggccaaca tggtgaaacc ttgtctctat
7020taaaaatacc aaaattagca agatgtggtg gtgggtgcct ataattccag
ctactcagga 7080ggctgaggca ggaggatcgc tggagccagg gaggcagagg
ttacagtaag caaagatcac 7140tccacttcac tccagcctgg gcaaaagagt
gagacatatc aaaaaataaa caaataaata 7200aataaataag tggcagttca
tcatttaact ccaaagactt tgcgtacatt tctactgaaa 7260acaatctgag
ctgattagaa ccctgccatt ttatagcctt tagctcgatc tccgaccgtt
7320catttaaaaa aattctactt caggccgggc atggtggctc aagcctgtaa
tcccatcact 7380gtaggaggcc aaagtgggca gatcacttaa ggtcaggagt
ttgagaccag cctggccacc 7440atggtgaaac cccatctcta ctaaaaatac
aaaaattagc cgggcttggt ggtgagcacc 7500tgtaatccca ccctgccgag
tggcaggctg aggcaggaga atcgcttgag cccaagagcc 7560ggaggttgca
gtgagccaag cttgcaccat tgcactccag cctaggcaac agagtgtgac
7620tccatctcaa gaaaaaaaaa attctatttc attttacaat atgcagatat
atgtccatac 7680acatgcataa tataaatgta taccatattt gtgagaatat
gcatatatgt acacattaga 7740tacacaatac aagcacaata catatgtctt
ttgcccaaga tacagcattt tgtaaaggag 7800acaggaattt agtaatatat
gttccagaaa cagtacacaa gagaattcgc cgagatgaga 7860aagttgtcac
taggaatggg gagtggtaag atgtagaagg tataattgtt cttaaagttc
7920tactgccaac tctttccaat taattaccca ctctgccatg ctttatggac
aggaggttgt 7980cggacactgt caattaataa atatttgagc atgatacact
gcttggagct cctctaatat 8040aggagagtga tatcctagtg catgttacag
agggagtgtc cacacagttc ctattgtcat 8100ttgatgagtt acttttcagg
ggccttgtac ctgagcaagt tgtcctcttt ttgatggatt 8160tcagattgag
ttacctgcat tgtcttgaga ttgcagcgtg tttcctccac tgtacggcgt
8220agtcagcaga tctattagtt aaactccagt gggccctcag tcactaaatc
tatcctctgt 8280gttgaaggct ttctgcattt gcctttcaat aaaggtttag
aataactcct taaaaaa 83375187PRTHomo sapiens 5Met Val Gly Ser Leu Asn
Cys Ile Val Ala Val Ser Gln Asn Met Gly1 5 10 15Ile Gly Lys Asn Gly
Asp Leu Pro Trp Pro Pro Leu Arg Asn Glu Phe 20 25 30Arg Tyr Phe Gln
Arg Met Thr Thr Thr Ser Ser Val Glu Gly Lys Gln 35 40 45Asn Leu Val
Ile Met Gly Lys Lys Thr Trp Phe Ser Ile Pro Glu Lys 50 55 60Asn Arg
Pro Leu Lys Gly Arg Ile Asn Leu Val Leu Ser Arg Glu Leu65 70 75
80Lys Glu Pro Pro Gln Gly Ala His Phe Leu Ser Arg Ser Leu Asp Asp
85 90 95Ala Leu Lys Leu Thr Glu Gln Pro Glu Leu Ala Asn Lys Val Asp
Met 100 105 110Val Trp Ile Val Gly Gly Ser Ser Val Tyr Lys Glu Ala
Met Asn His
115 120 125Pro Gly His Leu Lys Leu Phe Val Thr Arg Ile Met Gln Asp
Phe Glu 130 135 140Ser Asp Thr Phe Phe Pro Glu Ile Asp Leu Glu Lys
Tyr Lys Leu Leu145 150 155 160Pro Glu Tyr Pro Gly Val Leu Ser Asp
Val Gln Glu Glu Lys Gly Ile 165 170 175Lys Tyr Lys Phe Glu Val Tyr
Glu Lys Asn Asp 180 18563932DNAHomo sapiens 6tcccagacag aacctactat
gtgcggcggc agctggggcg ggaaggcggg agctgggggc 60gctgggggcg ctgcggccgc
tgcggccgct gcagccgctg cagcgccagg gtccacctgg 120tcggctgcac
ctgtggagga ggaggtggat ttcaggcttc ccgtagactg gaagaatcgg
180ctcaaaaccg cttgcctcgc aggggctgag ctggaggcag cgaggccgcc
cgacgcaggc 240ttccggcgag acatggcagg gcaaggatgg cagcccggcg
gcagggcctg gcgaggagcg 300cgagcccgcg gccgcagttc ccaggcgtct
gcgggcgcga gcacgccgcg accctgcgtg 360cgccggggcg ggggggcggg
gcctcgcctg cacaaatggg gacgaggggg gcggggcggc 420cacaatttcg
cgccaaactt gaccgcgcgt tctgctgtaa cgagcgggct cggaggtcct
480cccgctgctg tcatggttgg ttcgctaaac tgcatcgtcg ctgtgtccca
gaacatgggc 540atcggcaaga acggggacct gccctggcca ccgctcagga
atgaattcag atatttccag 600agaatgacca caacctcttc agtagaaggt
aaacagaatc tggtgattat gggtaagaag 660acctggttct ccattcctga
gaagaatcga cctttaaagg gtagaattaa tttagttctc 720agcagagaac
tcaaggaacc tccacaagga gctcattttc tttccagaag tctagatgat
780gccttaaaac ttactgaaca accagaatta gcaaataaag tagacatggt
ctggatagtt 840ggtggcagtt ctgtttataa ggaagccatg aatcacccag
gccatcttaa actatttgtg 900acaaggatca tgcaagactt tgaaagtgac
acgttttttc cagaaattga tttggagaaa 960tataaacttc tgccagaata
cccaggtgtt ctctctgatg tccaggagga gaaaggcatt 1020aagtacaaat
ttgaagtata tgagaagaat gattaatatg aaggtgtttt ctagtttaag
1080ttgttccccc tccctctgaa aaaagtatgt atttttacat tagaaaaggt
tttttgttga 1140ctttagatct ataattattt ctaagcaact agtttttatt
ccccactact cttgtctcta 1200tcagatacca tttatgagac attcttgcta
taactaagtg cttctccaag accccaactg 1260agtccccagc acctgctaca
gtgagctgcc attccacacc catcacatgt ggcactcttg 1320ccagtccttg
acattgtcgg gcttttcaca tgttggtaat atttattaaa gatgaagatc
1380cacataccct tcaactgagc agtttcacta gtggaaatac caaaagcttc
ctacgtgtat 1440atccagaggt ttgtagataa atgttgccac cttgtttgta
acagtgaaaa attgaaaaca 1500acctggaagt ccagtgatgg gaaaatgagt
atgtttctgt cttagattgg ggaacccaaa 1560gcagattgca agactgaaat
ttcagtgaaa gcagtgtatt tgctaggtca taccagaaat 1620catcaattga
ggtacggaga aactgaactg agaaggtaag aaaagcaatt taaagtcagc
1680gagcaggttc tcattgataa caagctccat actgctgaga tacagggaaa
tggagggggg 1740aaagctggag tattgatccc gcccccctcc ttggttgtca
gctccctgtc ctgtgtgtgg 1800gcggaacata gtccagctgc tctatagcaa
gtctcaggtg tttgcagtaa gaagctgctg 1860gcatgcacgg gaacagtgaa
tgccaaacac ttaaagcaat tcgatgttta agtatgtaag 1920ttcttttttt
tttagacagc gtttcgctct tgttgcccag gctagcatgc aatggtgtga
1980cctcggctta ctgcaacctc cgccttccca gattcaagcg attctcctgc
ctcaggctcc 2040caagtagcta ggaccaggtg cgcgccacca cgcccggcta
atttttgtat tttgtatttt 2100tagtagagat ggggtttcac catgttggtc
aggctagtct cgaactcgtg accgcaagcg 2160attcacccac ctcagcctcc
caaagtgctg ggattaccgg cttgagccac cacacccggc 2220acatcttcat
tctttttatg tagtaaaaag tataaggcca cacatggttt atttgaagta
2280ttttataatt taaaaaaata cagaagcagg aaaaccaatt ataagttcaa
gtgagggatg 2340atggttgctt gaaccaaagg gttgcatgta gtaagaaatt
gtgatttaag atatatttta 2400aagttataag tagcaggata ttctgatgga
gtttgacttt ggttttgggc ccagggagtt 2460tcagatgcct ttgagaaatg
aatgaagtag agagaaaata aaagaaaaac cagccaggca 2520cagtggctca
cacctgtaat cccagcgctt tgggaggcta aggcaggcag atcacttgag
2580accagcttgg gcaacatggc aaagccccat ctctacaaaa aacacaaaaa
ttagctgggc 2640attgtggcgc acacctgtat tcccatctag tcaggaagct
gagatggaag aattaattga 2700gcccacgagt tcaaggctgc agtgagtcgt
gattgtgcca ctgcactcca gccggggtga 2760cagaagagac cttgtctcga
aaaggaatct gaaaacaatg gaaccatgcc ttcataattc 2820tagaaagtta
ttttcaactg ataaatctat attcacccaa ataatcaagg gtgaaggtaa
2880aataatacat ttttagacaa gcaaagactc aggggttacc tccatgtgcc
ctttttaggg 2940aagctgttgg agaaaatact ccagcaaaat gaaggagtac
acaaaccaga gaatgacatg 3000aatccagcaa ataggatcca acacaggcaa
tattccagct atggagctag ctttaaaaag 3060gaacagtaaa aatattaatc
ggttagctgg gtggaatggc ccatgcctgt agtcccagct 3120actcaggagg
ctcagcagca ggacgacttg agcccaagag ttccagacca gcctggccac
3180cttagtgaga tcccttctct taaaaataat aacttattgc cagatttggg
gcatttggaa 3240agaagttcat tgaagataaa gcaaaagtaa aaaaaaaaaa
aaaaaaaaca aggggaaagg 3300gttggttagg caatcattct agggcagaaa
gaagtacagg ataggaagag cataatacac 3360tgtttttctc aacaaggagc
agtatgtaca cagtcataat gatgtgactg cttagcccct 3420aaatatggta
actactctgg gacaatatgg gaggaaaagt gaagattgtg atggtgtaag
3480agctaaatcc tcatctgtca tatccagaaa tcactatata atatataata
atgaaatgac 3540taagttatgt gaggaaaaaa acagaagaca ttgctaaaag
agttaaaagt cattgctctg 3600gagaattagg agggatgggg caggggactg
ttaggatgca ttataaactg aaaagccttt 3660ttaaaatttt atgtattaat
atatgcattc acttgaaaaa ctaaaaaaaa acaataattt 3720ggaaaaaccc
atgaaggtaa ctaacggaag gaaaaactaa gagaatgaaa agtatttgcc
3780tctggaaaga acaactggca ggactgttgt tttcattgta agacttttgg
agccatttaa 3840ttgtacttaa ccattttcat ctatttcttt aataagaaca
attccatctt aataaagagt 3900tacacttgtt aataagtaaa aaaaaaaaaa aa
393276PRTArtificial SequenceDescription of Artificial Sequence
Synthetic 6xHis tag 7His His His His His His1 5
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