U.S. patent application number 16/737725 was filed with the patent office on 2020-12-10 for new benzimidazoles derivatives as tec kinases family inhibitors.
The applicant listed for this patent is GB005, Inc.. Invention is credited to Alain Laurent, Stephen J. Morris, Yannick Rose.
Application Number | 20200385369 16/737725 |
Document ID | / |
Family ID | 1000005039038 |
Filed Date | 2020-12-10 |
![](/patent/app/20200385369/US20200385369A1-20201210-C00001.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00002.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00003.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00004.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00005.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00006.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00007.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00008.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00009.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00010.png)
![](/patent/app/20200385369/US20200385369A1-20201210-C00011.png)
View All Diagrams
United States Patent
Application |
20200385369 |
Kind Code |
A1 |
Laurent; Alain ; et
al. |
December 10, 2020 |
NEW BENZIMIDAZOLES DERIVATIVES AS TEC KINASES FAMILY INHIBITORS
Abstract
The present invention relates to a novel family of covalent
kinases inhibitors. Compounds of this class have been found to have
inhibitory activity against members of the Tec kinase family,
particularly ITK, BTK, BMX, Tec and/or RLK. The present invention
is directed to a compound of Formula I or pharmaceutically
acceptable salt, solvate, solvate of salt, stereoisomer, tautomer,
isotope, prodrug, complex or biologically active metabolite
thereof, and its use in therapy. ##STR00001##
Inventors: |
Laurent; Alain; (Montreal,
CA) ; Rose; Yannick; (Montreal, CA) ; Morris;
Stephen J.; (Montreal, CA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
GB005, Inc. |
San Diego |
CA |
US |
|
|
Family ID: |
1000005039038 |
Appl. No.: |
16/737725 |
Filed: |
January 8, 2020 |
Related U.S. Patent Documents
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
|
|
15772919 |
May 2, 2018 |
10562893 |
|
|
PCT/CA2016/051110 |
Sep 22, 2016 |
|
|
|
16737725 |
|
|
|
|
Current U.S.
Class: |
1/1 |
Current CPC
Class: |
A61K 45/06 20130101;
A61P 37/00 20180101; A61P 35/00 20180101; C07D 413/12 20130101;
C07D 235/32 20130101; C07D 409/12 20130101; A61P 31/12 20180101;
C07D 403/12 20130101; C07D 409/14 20130101; A61P 29/00 20180101;
C07D 413/14 20130101; A61K 47/02 20130101; C07D 401/12 20130101;
A61K 47/16 20130101; C07D 417/12 20130101 |
International
Class: |
C07D 409/12 20060101
C07D409/12; A61K 45/06 20060101 A61K045/06; C07D 413/12 20060101
C07D413/12; C07D 417/12 20060101 C07D417/12; C07D 413/14 20060101
C07D413/14; C07D 401/12 20060101 C07D401/12; C07D 403/12 20060101
C07D403/12; A61P 37/00 20060101 A61P037/00; A61P 31/12 20060101
A61P031/12; A61P 29/00 20060101 A61P029/00; A61P 35/00 20060101
A61P035/00; A61K 47/02 20060101 A61K047/02; A61K 47/16 20060101
A61K047/16; C07D 235/32 20060101 C07D235/32; C07D 409/14 20060101
C07D409/14 |
Foreign Application Data
Date |
Code |
Application Number |
Sep 25, 2015 |
CA |
2906137 |
Claims
1-50. (canceled)
51. A method for treating a subject suffering from a protein kinase
mediated disease, disorder, or condition associated with the
activity of at least one kinase member of the Tec kinase family,
comprising administering to the subject in need thereof a
therapeutically effective amount of a compound having the structure
of Formula I: ##STR00250## or a pharmaceutically acceptable salt,
stereoisomer, tautomer, isotope, prodrug, or complex thereof,
wherein R is substituted or unsubstituted thiophenyl; L is
##STR00251## wherein ring B.sub.1 is substituted or unsubstituted
cycloalkyl; R.sup.1 is hydrogen, lower alkyl, or lower cycloalkyl;
and n is 0 or 1; E is: ##STR00252## wherein: Ra, Rb, and Rc are
independently hydrogen, halogen, --CN, substituted or unsubstituted
alkyl, substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, or substituted or unsubstituted
heterocyclyl; or Ra and Rb, taken together with the carbon atoms to
which they are attached, form a 3- to 8-membered substituted or
unsubstituted cycloalkyl ring or form a 3- to 8-membered
substituted or unsubstituted heterocyclic ring and Rc is selected
as above; or Rb and Rc, taken together with the carbon atom to
which they are attached, form a 3- to 8-membered substituted or
unsubstituted cycloalkyl ring or form a 3- to 8-substituted or
unsubstituted membered heterocyclic ring and Ra is selected as
above; or Ra and Rb, taken together with the carbon atoms to which
they are attached, form a triple bond and Rc is selected as above;
wherein -L-E is: ##STR00253## X is a bond, alkylene,
-(alkylene)-NR.sup.2--, -(alkylene)-NR.sup.3--, -(alkylene)-O--,
--O--, --S--, --S(O).sub.m--, --NR.sup.2--, --C(O)--, --C(O)O--,
--C(O)NR.sup.2--, --C(O)ONR.sup.2--, or --S(O).sub.mNR.sup.2--,
wherein: R.sup.2 is hydrogen, lower alkyl or lower cycloalkyl;
R.sup.3 is --C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4;
R.sup.4 is lower alkyl or lower cycloalkyl; m is 1 or 2; and Y is
hydrogen, halogen, substituted or unsubstituted alkyl, substituted
or unsubstituted alkenyl, substituted or unsubstituted alkynyl,
substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, substituted or
unsubstituted heteroaryl, substituted or unsubstituted aralkyl, or
substituted or unsubstituted heteroaralkyl.
52. The method of claim 51, wherein R is: ##STR00254##
53. The method of claim 51, wherein R.sup.1 is hydrogen or methyl;
n is 0; E is: ##STR00255## wherein: Ra, Rb, and Rc are
independently hydrogen, halogen, --CN, substituted or unsubstituted
C.sub.1-C.sub.3 alkyl, substituted or unsubstituted heteroalkyl, or
substituted or unsubstituted cycloalkyl.
54. The method of claim 53, wherein -L-E is ##STR00256##
55. The method of claim 51, wherein E is ##STR00257##
56. The method of claim 51, wherein --X--Y is: (a)
--CH.sub.2--NH--Y, where Y is hydrogen, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkenyl,
substituted or unsubstituted alkynyl, substituted or unsubstituted
heteroalkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl; or (b) --CH.sub.2--NR.sup.2--Y, where R.sup.2 is
hydrogen, lower alkyl, or lower cycloalkyl; and Y is hydrogen,
halogen, substituted or unsubstituted alkyl, substituted or
unsubstituted alkenyl, substituted or unsubstituted alkynyl,
substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, substituted or
unsubstituted heteroaryl, substituted or unsubstituted aralkyl, or
substituted or unsubstituted heteroaralkyl; or (c)
--C(O)--NR.sup.2--Y, where R.sup.2 is hydrogen, lower alkyl, or
lower cycloalkyl; and Y is selected from the group consisting of:
hydrogen, halogen, substituted or unsubstituted alkyl, substituted
or unsubstituted alkenyl, substituted or unsubstituted alkynyl,
substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, substituted or
unsubstituted heteroaryl, substituted or unsubstituted aralkyl, and
substituted or unsubstituted heteroaralkyl; or (d)
--NR.sup.2C(O)--Y, where R.sup.2 is hydrogen, lower alkyl, or lower
cycloalkyl; and Y is hydrogen, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkenyl,
substituted or unsubstituted alkynyl, substituted or unsubstituted
heteroalkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl; or (e) --NR.sup.2SO.sub.2--Y, where R.sup.2 is
hydrogen, lower alkyl, or lower cycloalkyl; and Y is hydrogen,
halogen, substituted or unsubstituted alkyl, substituted or
unsubstituted alkenyl, substituted or unsubstituted alkynyl,
substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, substituted or
unsubstituted heteroaryl, substituted or unsubstituted aralkyl, or
substituted or unsubstituted heteroaralkyl; or (f)
--O--CH.sub.2--Y, where Y is hydrogen, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkenyl,
substituted or unsubstituted alkynyl, substituted or unsubstituted
heteroalkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl; or (g) --CH.sub.2--NR.sup.3--Y, where R.sup.3 is
--C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4, wherein m is
1 or 2; R.sup.4 is lower alkyl or lower cycloalkyl; and Y is
hydrogen, halogen, substituted or unsubstituted alkyl, substituted
or unsubstituted alkenyl, substituted or unsubstituted alkynyl,
substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, substituted or
unsubstituted heteroaryl, substituted or unsubstituted aralkyl, or
substituted or unsubstituted heteroaralkyl; or (h) --CH.sub.2--Y
where Y is hydrogen, halogen, substituted or unsubstituted alkyl,
substituted or unsubstituted alkenyl, substituted or unsubstituted
alkynyl, substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, substituted or
unsubstituted heteroaryl, substituted or unsubstituted aralkyl, or
substituted or unsubstituted heteroaralkyl.
57. The method of claim 51, wherein the method comprises
administering to the subject in need thereof a therapeutically
effective amount of a compound having the structure of Formula IIa:
##STR00258## or a pharmaceutically acceptable salt, stereoisomer,
tautomer, isotope, prodrug, or complex thereof, wherein R is
substituted or unsubstituted thiophenyl; m is 0, 1, 2 or 3; n.sub.2
is 1, 2 or 3; R.sup.1 is hydrogen, lower alkyl or lower cycloalkyl;
and --X--Y is --CH.sub.2--NH--Y, --CH.sub.2--NR.sup.2--Y,
--CH.sub.2--NR.sup.3--Y, --NR.sup.2C(O)--Y, --C(O)NR.sup.2--Y, or
--CH.sub.2--Y, wherein R.sup.2 is hydrogen, lower alkyl, or lower
cycloalkyl; R.sup.3 is --C(O)R.sup.4, --C(O)OR.sup.4 or
--S(O).sub.mR.sup.4, wherein m is 1 or 2; R.sup.4 is lower alkyl or
lower cycloalkyl; and Y is hydrogen, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkenyl,
substituted or unsubstituted alkynyl, substituted or unsubstituted
heteroalkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl.
58. The method of claim 51, wherein the method comprises
administering to the subject in need thereof a therapeutically
effective amount of a compound having one of the following
structures: TABLE-US-00007 Compound No. Structure 1 ##STR00259## 3
##STR00260## 6 ##STR00261## 18 ##STR00262## 58 ##STR00263## 62
##STR00264## 63 ##STR00265## 64 ##STR00266## 65 ##STR00267## 68
##STR00268## 70 ##STR00269## 71 ##STR00270## 81 ##STR00271##
or a pharmaceutically acceptable salt, stereoisomer, tautomer,
isotope, prodrug, or complex thereof.
59. The method of claim 51, wherein the at least one kinase member
of the Tec kinase family is ITK, BTK, BMX, RLK, or a combination
thereof.
60. The method of claim 51, further comprising administering a
therapeutically effective amount of at least one additional active
pharmaceutical ingredient for the treatment of cancer, an
autoimmune disease, an allergic disease, an inflammatory disease,
or a viral infection.
61. The method of claim 51, wherein the protein kinase mediated
disease, disorder, or condition is cancer, an autoimmune disease,
an allergic disease, an inflammatory disease, or a viral
infection.
62. The method of any one of claims 51-61, wherein the protein
kinase mediated disease, disorder, or condition is lung
inflammation, allergic asthma, pneumonia, psoriasis, atopic
dermatitis, uveitis, dry eye disease, arthritis, systemic lupus
erythematosus, rheumatoid arthritis, psoriatic arthritis, Still's
disease, juvenile arthritis, type I diabetes, inflammatory bowel
disease, myasthenia gravis, Hashimoto's thyroiditis, Ord's
thyroiditis, Basedow's disease, Sjogren's syndrome, multiple
sclerosis, Guillain-Barre syndrome, acute disseminated
encephalomyelitis, Addison disease, opsoclonus-myoclonus syndrome,
ankylosing spondylitis, antiphospholipid antibody syndrome,
aplastic anemia, autoimmune hepatitis, celiac disease,
Goodpasture's syndrome, idiopathic thrombocytopenic purpura, optic
neuritis, scleroderma, primary biliary cirrhosis, Reiter's disease,
Takayasu arteritis, temporal arteritis, warm autoimmune hemolytic
anemia, Wegener granuloma, alopecia universalis, Burchett disease,
chronic fatigue syndrome, dysautonomia, endometriosis, interstitial
cystitis, myotonia, vulvodynia, pemphigus, allergy, anaphylaxis,
allergic conjunctivitis, allergic rhinitis, atopic dermatitis,
asthma, appendicitis, blepharitis, bronchiolitis, bronchitis,
bursitis, cervicitis, cholangitis, cholecystitis, colitis,
conjunctivitis, cystitis, dacryoadenitis, dermatitis,
dermatomyositis, encephalitis, endocarditis, endometritis,
enteritis, epicondylitis, epididymitis, fasciitis, fibrositis,
gastritis, gastroenteritis, hepatitis, hidradenitis suppurativa,
inflammatory bowel disease, laryngitis, mastitis, meningitis,
myelitis, myocarditis, myositis nephritis, oophoritis, orchitis,
osteitis, osteoarthritis, pancreatitis, parotitis, pericarditis,
peritonitis, pharyngitis, pleuritis, phlebitis, pneumonia,
proctitis, prostatitis, pyelonephritis, rhinitis, salpingitis,
sinusitis, stomatitis, synovitis, tendinitis, tonsillitis, uveitis,
vaginitis, vasculitis, vulvitis, HIV/AIDS, influenza, T-cell
lymphomas, T-cell leukemias, peripheral T-cell lymphoma, Seazry
syndrome/cutaneous T-cell lymphoma, acute lymphoblastic leukemia,
adult T-cell leukemia/lymphoma, NK/T-cell lymphoma, nasal type or
aggressive NK-cell leukemia, or a combination thereof.
63. A method of modulating or inhibiting in a subject protein
kinase activity associated with at least one kinase member of the
Tec kinase family, comprising administering to the subject in need
thereof a therapeutically effective amount of a compound of Formula
1: ##STR00272## or a pharmaceutically acceptable salt,
stereoisomer, tautomer, isotope, prodrug, or complex thereof,
wherein R is substituted or unsubstituted thiophenyl; L is
##STR00273## wherein ring B.sub.1 is substituted or unsubstituted
cycloalkyl; R.sup.1 is hydrogen, lower alkyl, or lower cycloalkyl;
and n is 0 or 1; E is: ##STR00274## wherein: Ra, Rb, and Rc are
independently hydrogen, halogen, --CN, substituted or unsubstituted
alkyl, substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, or substituted or unsubstituted
heterocyclyl; or Ra and Rb, taken together with the carbon atoms to
which they are attached, form a 3- to 8-membered substituted or
unsubstituted cycloalkyl ring or form a 3- to 8-membered
substituted or unsubstituted heterocyclic ring and Rc is selected
as above; or Rb and Rc, taken together with the carbon atom to
which they are attached, form a 3- to 8-membered substituted or
unsubstituted cycloalkyl ring or form a 3- to 8-substituted or
unsubstituted membered heterocyclic ring and Ra is selected as
above; or Ra and Rb, taken together with the carbon atoms to which
they are attached, form a triple bond and Rc is selected as above;
wherein -L-E is: ##STR00275## X is a bond, alkylene,
-(alkylene)-NR.sup.2--, -(alkylene)-NR.sup.3--, -(alkylene)-O--,
--O--, --S--, --S(O).sub.m--, --NR.sup.2--, --NR.sup.3--, --C(O)--,
--C(O)O--, --C(O)NR.sup.2--, --C(O)ONR.sup.2--, or
S(O).sub.mNR.sup.2--, wherein: R.sup.2 is hydrogen, lower alkyl or
lower cycloalkyl; R.sup.3 is --C(O)R.sup.4, --C(O)OR.sup.4 or
--S(O).sub.mR.sup.4; R.sup.4 is lower alkyl or lower cycloalkyl; m
is 1 or 2; and Y is hydrogen, halogen, substituted or unsubstituted
alkyl, substituted or unsubstituted alkenyl, substituted or
unsubstituted alkynyl, substituted or unsubstituted heteroalkyl,
substituted or unsubstituted cycloalkyl, substituted or
unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl.
64. A method of inhibiting in a cell or a tissue a protein kinase
associated with at least one kinase member of the Tec kinase
family, comprising contacting the cell or tissue with a compound of
Formula 1: ##STR00276## or a pharmaceutically acceptable salt,
stereoisomer, tautomer, isotope, prodrug, or complex thereof,
wherein R is substituted or unsubstituted thiophenyl; L is
##STR00277## wherein ring B.sub.1 is substituted or unsubstituted
cycloalkyl; R.sup.1 is hydrogen, lower alkyl, or lower cycloalkyl;
and n is 0 or 1; E is: ##STR00278## wherein: Ra, Rb, and Rc are
independently hydrogen, halogen, --CN, substituted or unsubstituted
alkyl, substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, or substituted or unsubstituted
heterocyclyl; or Ra and Rb, taken together with the carbon atoms to
which they are attached, form a 3- to 8-membered substituted or
unsubstituted cycloalkyl ring or form a 3- to 8-membered
substituted or unsubstituted heterocyclic ring and Rc is selected
as above; or Rb and Rc, taken together with the carbon atom to
which they are attached, form a 3- to 8-membered substituted or
unsubstituted cycloalkyl ring or form a 3- to 8-substituted or
unsubstituted membered heterocyclic ring and Ra is selected as
above; or Ra and Rb, taken together with the carbon atoms to which
they are attached, form a triple bond and Rc is selected as above;
wherein -L-E is: ##STR00279## X is a bond, alkylene,
-(alkylene)-NR.sup.2--, -(alkylene)-NR.sup.3--, -(alkylene)-O--,
--O--, --S--, --S(O).sub.m--, --NR.sup.2--, --NR.sup.3--, --C(O)--,
--C(O)O--, --C(O)NR.sup.2--, --C(O)ONR.sup.2--, or
S(O).sub.mNR.sup.2--, wherein: R.sup.2 is hydrogen, lower alkyl or
lower cycloalkyl; R.sup.3 is --C(O)R.sup.4, --C(O)OR.sup.4 or
--S(O).sub.mR.sup.4; R.sup.4 is lower alkyl or lower cycloalkyl; m
is 1 or 2; and Y is hydrogen, halogen, substituted or unsubstituted
alkyl, substituted or unsubstituted alkenyl, substituted or
unsubstituted alkynyl, substituted or unsubstituted heteroalkyl,
substituted or unsubstituted cycloalkyl, substituted or
unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl.
Description
FIELD OF INVENTION
[0001] The present invention relates to a novel family of protein
kinase inhibitors, their pharmaceutically acceptable salts, to
pharmacological compositions that contain them and to their use of
the inhibitors to treat or prevent diseases, disorders and
conditions associated with kinase function.
BACKGROUND OF THE INVENTION
[0002] Protein kinases are a large group of intracellular and
transmembrane signalling proteins in eukaryotic cells (Manning G.
et al, (2002) Science, 298: 1912-1934). Phosphorylation of specific
amino acid residues in target proteins by protein kinases can
modulate their activity leading to profound changes in cellular
signalling and metabolism. Kinases play key roles in the regulation
of cellular proliferation, survival, differentiation and function.
Many kinases have been implicated in disease and, as such, are
attractive therapeutic targets.
[0003] The Tec family of kinases consists of Tyrosine kinase
expressed in hepatocellular carcinoma (TEC), Interleukin-2
inducible T-cell kinase (ITK, also known as TSK and EMT), Resting
lymphocyte kinase (RLK, also known as TXK), Bruton's tyrosine
kinase (BTK), Bone marrow kinase on the X-chromosome (BMX, also
known as ETK) (Bradshaw J M Cell Signal. 2010; 22(8):1175-84).
These intracellular kinases play important roles in the development
and function of lymphocytes and myeloid cells (Horwood et al. Int
Rev Immunol. 2012; 31(2):87-103, Felices M et al. Adv Immunol.
2007; 93:145-84). Additionally, selected Tec family members such as
ITK, TEC and BMX are expressed in cancerous cells where they may
play a role in cancer cell survival and malignancy (Carson C C et
al. Clin Cancer Res. 2015; 21(9):2167-76, Mano H. et al. Oncogene.
1990; 5(12):1781-6, Cenni B et al. Int Rev Immunol. 2012;
31(2):166-73).
[0004] ITK is an important component of T-cell signaling function
and differentiation. ITK is activated upon stimulation of T-cell
receptors and initiates a signaling cascade that results in
cellular activation, cytokine release and rapid proliferation. ITK
is important in T-helper (Th) cell development and function
including Th1, Th2, Th9, Th17 and T-regulatory cell development
(Fowell D J et al. 1999 Immunity 11:399-409; Gomez-Rodriguez J. et
al. 2014 J. Exp Med 211:529-543, Gomez-Rodriguez J. et al 2016 Nat
Commun. 2016; 7:10857). For example, ITK -/-CD4+ T-cells show
significant reduction in the production of Th1 and Th17 cytokines
and exhibit skewed T- effector/Treg- cell ratios with a bias
towards FoxP3+Treg (Kannan A et al 2015. J Neurosci. 35:221-233,
Gomez-Rodriguez J. et al. 2014 J. Exp Med 211:529-543).
Furthermore, specific inhibition of an allele-sensitive ITK mutant
shows that ITK is important in Th1, Th2, Th17, and iNKT-cell
cytokine production (Kannan A et al Eur. J. Immunol. 2015. 45:
2276-2285). Consequently, ITK is an important target for prevention
or treatment of diseases involving Th cytokines, or where
modulation of immunosuppressive Treg cells is desired. Furthermore,
polymorphisms in the ITK promoter that increase ITK expression in
humans have been linked to increased asthma incidence (Lee, S. H.
et al. 2011 Ann Hum Genet 75:359-369) and ITK preferentially
regulates the secretion of the Th2 cytokines IL-5 and IL-13 in
models of allergic asthma suggesting that ITK inhibitors may be
useful in the treatment of asthma (Muller C et al. 2003 J Immunol.
170:5056-63). Also, ITK is upregulated in lesional skin from
patients with allergic contact dermatitis, atopic dermatitis and
psoriasis (von Bonin A et al. 2010. Exp. Derm; 20, 41-47).
[0005] RLK (TXK) is another Tec family member that is expressed in
T-cells (Hu Q et al. 1995 J. Biol Chem. 270:1928-1934). TXK and ITK
regulate Th cell-mediated responses via their differential
expression in Th1 and Th2 cells, respectively (Sahu N et al. J.
Immunol. 2008, 181:6125-6131). Furthermore, while ITK -/-mice have
impaired in NKT cell generation this defect is exacerbated in the
absence of both RLK and ITK (Felices M. et al. 2008, J Immunol.
180:3007-3018). Increased expression of RLK has been reported in
patients with Behcet's disease, an inflammatory disorder associated
with increased inflammation and Th1 cytokine production (Suzuki N
et al. 2006 Clin Med Res. 4:147-151). Knockout of both ITK and RLK
produces stronger effects on T-cell function than knockout of
either kinase alone (Schaeffer et al. 1999 Science 284:638-641;
Felices et al. 2008 J. Immunol. 180:3007-3018).
[0006] TEC kinase, first shown to be expressed in hepatocellular
carcinoma (Mano et al. 1990 Oncogene. 5:1781-6), is expressed in
normal B and T-cells and is up-regulated upon T-cell activation in
Th1 and Th2 cells (Tomlinson M G et al 2004 Mol. Cell. Biol.,
24:2455-2466). TEC may have different roles from either ITK or RLK.
TEC has a unique subcellular distribution differential protein
interactions compared with ITK and RLK (Tomlinson M G et al 2004
Mol. Cell. Biol., 24:2455-2466) and TEC, but not RLK or LTK, is a
tyrosine kinase of c-Maf leading to enhancement of c-Maf-dependent
IL-4 promoter activity (Liu C C et al. 2015 PLoS One. 10:e0127617).
Lastly, TEC controls assembly of the non-cannonical caspase 8
inflammasome involved in fungal sepsis and Tec-deficient mice are
highly resistant to candidiasis (Zwolanek F et al. 2014 PLoS Pathog
10, e1004525).
[0007] Experimental data using Tec-kinase family null animals
supports the therapeutic benefit of kinase inhibition in human
disease. ITK modulates neuroinflammation due to experimental
autoimmune encephalomyelitis (EAE), the animal model of multiple
sclerosis (MS). ITK-/- mice exhibit reduced disease severity, and
transfer of ITK-/-CD4+ T-cells into T-cell-deficient mice results
in lower EAE disease severity (Kannan Ak et al. J. Neurosci, 2015;
35:221-233). ITK -/- mice exhibit decreased inflammatory response
in contact hypersensitivity models (Von Bonin et al. Experimental
Dermatology, 2010; 20, 41-47) and secretion of the Th2 cytokines
IL-5 and IL-13 is decreased in models of allergic asthma in ITK -/-
mice (Mueller C et al. J Immunol. 2003; 170(10):5056-63).
[0008] Data obtained with inhibitors of select Tec family kinases
suggests that inhibitors of these kinases may be useful in the
treatment of disease. Inhibitors of ITK, RLK and other Tec family
members may be useful in the prevention or treatment of T-cell
related diseases such as multiple sclerosis, asthma, atopic
dermatitis, psoriasis and inflammatory bowel diseases as well as
viral infections. For example, a small molecule inhibitor of ITK
and RLK has shown efficacy in the mouse adoptive T-cell transfer
model of colitis (Cho H-S et al. 2015; J. Immunol. 195:
4822-31).
[0009] Also, a selective ITK inhibitor blocked leukocyte lung
infiltration following ovalbumin challenge in a rat model of asthma
(Lin T A et al. 2004 Biochemistry. 43:11056-11062). Additionally,
an ITK inhibitor was effective in mouse models of skin contact
hypersensitivity (von Bonin A et al. 2010. Exp. Derm; 20, 41-47).
Furthermore, ITK inhibitors can alter the HIV replication at
various stages of viral life cycle including viral entry,
gp120-induced actin reorganization, transcription from viral long
terminal repeats (LTR) and virion assembly release from T-cells
(Readinger J A et al. Proc Natl Acad Sci USA. 2008;
105(18):6684-9). Similarly ITK inhibition alleviates T-cell
activation and murine myocardial inflammation associated with
Coxsackie virus CVB3 infection (He F et al. Mol Immunol. 2014;
59(1):30-8) and ITK is required for efficient replication of
influenza virus in infected T-cells (Fan K et al. J Gen Virol.
2012; 93(Pt 5):987-97). These data suggest that inhibitors of the
Tec family kinases may be useful in the treatment of a variety of
human and animal diseases.
SUMMARY OF THE INVENTION
[0010] The present invention relates to a novel family of covalent
kinase inhibitors. Compounds of this class have been found to have
inhibitory activity against members of the Tec kinase family,
particularly ITK, BTK, BMX and/or RLK (TXK) and/or TEC.
[0011] One aspect of the present invention is directed to a
compound of Formula I:
##STR00002##
[0012] or pharmaceutically acceptable salt, solvate, solvate of
salt, stereoisomer, tautomer, isotope, prodrug, complex or
biologically active metabolite thereof, wherein
[0013] R is selected from substituted or unsubstituted aryl, or
substituted or unsubstituted heteroaryl;
[0014] L is independently selected from
##STR00003##
[0015] where the ring B.sub.1 is selected from substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, or substituted or
unsubstituted heteroaryl;
[0016] or
##STR00004##
[0017] where the ring B.sub.2 is selected from substituted or
unsubstituted polycyclic ring system;
[0018] R.sup.1 is selected from hydrogen, lower alkyl or lower
cycloalkyl;
[0019] n is an integer from 0 to 1;
[0020] E is:
##STR00005## [0021] wherein: [0022] Ra, Rb and Rc are independently
selected from hydrogen, halogen, --CN, substituted or unsubstituted
alkyl, substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, and substituted or unsubstituted
heterocyclyl; or [0023] Ra and Rb taken together with the carbon
atoms to which they are attached form a 3- to 8-membered
substituted or unsubstituted cycloalkyl ring, or form a 3- to
8-membered substituted or unsubstituted heterocyclyl ring, and Rc
is selected as above; or [0024] Rb and Rc taken together with the
carbon atom to which they are attached form a 3- to 8-membered
substituted or unsubstituted cycloalkyl ring, or form a 3- to
8-membered substituted or unsubstituted heterocyclyl ring, and Ra
is selected as above; or [0025] Ra and Rb taken together with the
carbon atoms to which they are attached form a triple bond and Rc
is selected as above;
[0026] provided L-E is selected from
##STR00006##
[0027] X is either: [0028] 1) selected from alkylene,
-(alkylene)-NR.sup.2--, -(alkylene)-NR.sup.3--, -(alkylene)-O--,
--O--, --S--, --S(O).sub.m--, --NR.sup.2--, --NR.sup.3--, --C(O)--,
--C(O)O--, --C(O)NR.sup.2--, --C(O)ONR.sup.2--, or
--S(O).sub.mNR.sup.2--; [0029] R.sup.2 is selected from hydrogen,
lower alkyl or lower cycloalkyl; [0030] R.sup.3 is selected from
--C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4; [0031]
R.sup.4 is selected from lower alkyl or lower cycloalkyl; and
[0032] m is an integer selected from 1 to 2; or [0033] 2) X is a
bond; and
[0034] Y is selected from hydrogen, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkenyl,
substituted or unsubstituted alkynyl, substituted or unsubstituted
heteroalkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl.
[0035] In another aspect provided herein a pharmaceutical
composition comprising a compound disclosed herein of Formula I,
and/or a pharmaceutically acceptable salt, solvate, solvate of
salt, stereoisomer, tautomer, isotope, prodrug, complex or
biologically active metabolite thereof; and one or more
pharmaceutically acceptable excipients.
[0036] The pharmaceutical composition of the present invention
comprising a compound of Formula I, and/or a pharmaceutically
acceptable salt, solvate, solvate of salt, stereoisomer, tautomer,
isotope, prodrug, complex or biologically active metabolite thereof
suitable for use in therapy, wherein a subject is suffering of a
disease, disorder or condition in which one or more TEC kinase
family member activity is implicated and can be treated by kinase
inhibition.
[0037] In another aspect, the present invention relates to the use
of a compound of Formula I as defined herein, or a pharmaceutically
acceptable salt or solvate thereof, in the manufacture of a
medicament for use in subjects for the treatment or prevention of
protein kinase mediated diseases or conditions, for the treatment
of cancer, autoimmune diseases, allergic diseases, inflammatory
diseases, graft-versus-host disease, thromboembolic diseases,
neurological disorders, viral infections, bone-related diseases or
combinations thereof.
[0038] Another aspect of the present invention provides the
synthetic methods used to prepare compounds of Formula I of the
present invention and are not intended to be limiting.
[0039] In yet another aspect, provided herein a method of
preventing or treating a disease treatable by inhibition of ITK in
a patient which comprises administering to the patient a
pharmaceutical composition comprising a compound of Formula I
and/or a pharmaceutically acceptable salt, solvate, solvate of
salt, stereoisomer, tautomer, isotope, prodrug, complex or
biologically active metabolite thereof disclosed herein in a
therapeutically effective amount and one or more pharmaceutically
acceptable excipients. In a particular embodiment, the disease or
conditions include allergic diseases, autoimmune diseases,
inflammatory diseases, thromboembolic diseases, bone-related
diseases, cancer, graft-versus-host disease, and thereof.
[0040] In one embodiment of this aspect the patient suffers from a
disease or disorder that can be treated by kinase inhibition. The
compound disclosed herein and/or pharmaceutically acceptable salt
thereof can inhibit one or more kinases including but not limited
to ITK, RLK (also known as TXK), BLK, BMX, BTK, JAK3, and/or
TEC.
[0041] In another aspect the present invention provides a
pharmaceutical combination comprising a compound of Formula I,
Formula IIa, Formula IIb, Formula IIc of the present invention or a
pharmaceutically acceptable salt, solvate, solvate of salt,
stereoisomer, tautomer, isotope, prodrug, complex or biologically
active metabolite thereof and at least one additional active
pharmaceutical ingredient for the treatment or prevention of
cancer, autoimmune diseases, allergic diseases, inflammatory
diseases or viral infection in combination therapy.
[0042] In one embodiment the present invention provides a method of
treatment wherein further comprising administering of a
therapeutically effective amount of at least one additional active
pharmaceutical ingredient for the treatment of cancer, autoimmune
diseases, allergic diseases, inflammatory diseases, neurological
disorders or viral infection in combination therapy. The additional
active pharmaceutical ingredient is administered together with the
compounds of Formula I, Formula IIa, Formula IIb, Formula IIc, or a
pharmaceutically acceptable salt, solvate, solvate of salt,
stereoisomer, tautomer, isotope, prodrug, complex or biologically
active metabolite thereof as a single dosage form or separately as
part of a multiple dosage form. The additional active
pharmaceutical ingredient is selected from the group comprising:
steroids, leukotriene antagonists, anti-histamines, anti-cancer,
anti-viral, anti-biotic agents, protein kinase inhibitors or
combinations thereof.
[0043] The administration of a compound of the present invention
may be by any appropriate means known in the field, including
systemic and localized administration. Prior to administration, the
compounds may be formulated as compositions suitable for
pharmaceutical or clinical use. Such compositions may comprise
appropriate carriers or excipients, such as those for topical,
inhalation, or systemic administration. The compound of the present
invention may be administered alone or in combination with one or
more pharmaceutically acceptable active for the treatment or
prevention of a protein kinase mediated condition.
[0044] All publications, patent applications, patents and other
references mentioned herein are incorporated by reference in their
entirety.
[0045] Other features, objects, and advantages of the invention(s)
disclosed herein will be apparent from the description and
drawings, and from the claims.
DETAILED DESCRIPTION OF THE INVENTION
[0046] The present invention is directed to a compound of Formula
I:
##STR00007##
[0047] or pharmaceutically acceptable salt, solvate, solvate of
salt, stereoisomer, tautomer, isotope, prodrug, complex or
biologically active metabolite thereof, wherein
[0048] R is selected from substituted or unsubstituted aryl, or
substituted or unsubstituted heteroaryl;
[0049] L is independently selected from
##STR00008##
[0050] where the ring B.sub.1 is selected from substituted or
unsubstituted cycloalkyl, substituted or unsubstituted
heterocyclyl, substituted or unsubstituted aryl, or substituted or
unsubstituted heteroaryl;
[0051] or
##STR00009##
[0052] where the ring B.sub.2 is selected from substituted or
unsubstituted polycyclic ring system;
[0053] R.sup.1 is selected from hydrogen, lower alkyl or lower
cycloalkyl;
[0054] n is an integer from 0 to 1;
[0055] E is:
##STR00010## [0056] wherein: [0057] Ra, Rb and Rc are independently
selected from hydrogen, halogen, --CN, substituted or unsubstituted
alkyl, substituted or unsubstituted heteroalkyl, substituted or
unsubstituted cycloalkyl, and substituted or unsubstituted
heterocyclyl; or [0058] Ra and Rb taken together with the carbon
atoms to which they are attached form a 3- to 8-membered
substituted or unsubstituted cycloalkyl ring, or form a 3- to
8-membered substituted or unsubstituted heterocyclyl ring, and Rc
is selected as above; or [0059] Rb and Rc taken together with the
carbon atom to which they are attached form a 3- to 8-membered
substituted or unsubstituted cycloalkyl ring, or form a 3- to
8-membered substituted or unsubstituted heterocyclyl ring, and Ra
is selected as above; or [0060] Ra and Rb taken together with the
carbon atoms to which they are attached form a triple bond and Rc
is selected as above;
[0061] wherein L-E is selected from
##STR00011##
[0062] X is either: [0063] 1) selected from alkylene,
-(alkylene)-NR.sup.2--, -(alkylene)-NR.sup.3--, -(alkylene)-O--,
--O--, --S--, --S(O).sub.m--, --NR.sup.2--, --NR.sup.3--, --C(O)--,
--C(O)O--, --C(O)NR.sup.2--, --C(O)ONR.sup.2--, or
--S(O).sub.mNR.sup.2--; [0064] R.sup.2 is selected from hydrogen,
lower alkyl or lower cycloalkyl; [0065] R.sup.3 is selected from
--C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4; [0066]
R.sup.4 is selected from lower alkyl or lower cycloalkyl; and
[0067] m is an integer selected from 1 to 2; or [0068] 2) X is a
bond, and
[0069] Y is selected from hydrogen, halogen, substituted or
unsubstituted alkyl, substituted or unsubstituted alkenyl,
substituted or unsubstituted alkynyl, substituted or unsubstituted
heteroalkyl, substituted or unsubstituted cycloalkyl, substituted
or unsubstituted heterocyclyl, substituted or unsubstituted aryl,
substituted or unsubstituted heteroaryl, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl.
[0070] An embodiment of the present invention relates to a novel
covalent kinase inhibitors of Formula I
##STR00012##
[0071] Wherein R is selected from substituted or unsubstituted 5-
and 6-membered aryl ring or substituted or unsubstituted 5- and
6-membered heteroaryl ring;
[0072] L is independently selected from
##STR00013## [0073] Wherein ring B.sub.1 is selected from
substituted or unsubstituted 3- to 8-membered cycloalkyl ring,
substituted or unsubstituted 3- to 8-membered heterocyclyl ring,
substituted or unsubstituted 5- and 6-membered aryl ring,
substituted or unsubstituted 5- and 6-membered heteroaryl ring;
[0074] or
[0074] ##STR00014## [0075] wherein ring B.sub.2 is selected from
substituted or unsubstituted 9- to 12-membered polycyclic ring
system; [0076] R.sup.1 is selected from hydrogen, C.sub.1-6 alkyl
or 3- to 8-membered cycloalkyl ring; [0077] n is an integer
selected from 0 or 1;
[0078] E is selected from the group:
##STR00015## [0079] wherein Ra, Rb and Rc are independently
selected from hydrogen, halogen, --CN, substituted or unsubstituted
C.sub.1-6 alkyl chain, substituted or unsubstituted heteroalkyl
chain of 2 to 6 atoms, substituted or unsubstituted 3- to
8-membered cycloalkyl ring, or substituted or unsubstituted 3- to
8-membered heterocyclyl ring; or [0080] Ra and Rb taken together
with the carbon atoms to which they are attached form a 3- to
8-membered substituted or unsubstituted cycloalkyl ring or form a
3- to 8-membered substituted or unsubstituted heterocyclyl ring and
Rc is selected as above; or [0081] Rb and Rc taken together with
the carbon atom to which they are attached form a 3- to 8-membered
substituted or unsubstituted cycloalkyl ring, or form a 3- to
8-membered substituted or unsubstituted heterocyclyl ring, and Ra
is selected as above; or [0082] Ra and Rb taken together with the
carbon atoms to which they are attached form a triple bond and Rc
is selected as above; [0083] wherein L-E is selected from
##STR00016##
[0084] X is selected from C.sub.1-6 alkylene, --(C.sub.1-6
alkylene)-NR.sup.2--, --(C.sub.1-6 alkylene)-NR.sup.3--,
--(C.sub.1-6 alkylene)-O--, --O--, --S--, --S(O).sub.m--,
--NR.sup.2--, --NR.sup.3--, --C(O)--, --C(O)O--, --C(O)NR.sup.2--,
--C(O)ONR.sup.2--, and --S(O).sub.mNR.sup.2--;
[0085] wherein [0086] R.sup.2 is selected from hydrogen, C.sub.1-6
alkyl or 3- to 8-membered cycloalkyl ring; [0087] R.sup.3 is
selected from --C(O)R.sup.4, --C(O)OR.sup.4 and
--S(O).sub.mR.sup.4; [0088] R.sup.4 is selected from C.sub.1-6
alkyl or 3- to 8-membered cycloalkyl ring; [0089] m is an integer
selected from 1 to 2; or
[0090] X is a bond, and;
[0091] Y is selected from the group consisting of hydrogen,
halogen, substituted or unsubstituted C.sub.1-6 alkyl chain,
substituted or unsubstituted C.sub.2-6 alkenyl chain, substituted
or unsubstituted C.sub.2-6 alkynyl chain, substituted or
unsubstituted heteroalkyl chain of 2 to 6 atoms, substituted or
unsubstituted 3- to 8-membered cycloalkyl ring, substituted or
unsubstituted 3- to 8-membered heterocyclyl ring, substituted or
unsubstituted 5-, and 6-membered aryl ring, substituted or
unsubstituted 5-, and 6-membered heteroaryl ring, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl.
[0092] An embodiment includes compounds of Formula I, wherein Ra,
Rb and Rc are independently selected from the group consisting of
hydrogen, --CN, halogen, C.sub.1-3 substituted or unsubstituted
alkyl chain, or substituted or unsubstituted heteroalkyl chain of 2
to 3 atoms.
[0093] An embodiment includes compounds of Formula I, wherein n is
=0.
[0094] An embodiment includes compounds of Formula I, wherein n is
=1.
[0095] An embodiment includes compounds of Formula I, wherein ring
B.sub.1 is a 3- to 8-membered substituted or unsubstituted
cycloalkyl ring, or a 3- to 8-membered substituted or unsubstituted
heterocyclic ring.
[0096] An embodiment includes compounds of Formula I, wherein ring
B.sub.1 is a substituted or unsubstituted aryl ring, or a
substituted or unsubstituted heteroaryl ring, for example a
substituted or unsubstituted phenyl ring or a substituted or
unsubstituted 5 to 6 membered heteroaryl ring.
[0097] An embodiment includes compounds of Formula I, wherein ring
B.sub.1 is a substituted or unsubstituted 5-, and 6-membered aryl
ring, or a substituted or unsubstituted 5-, and 6-membered
heteroaryl ring.
[0098] An embodiment includes compounds of Formula I, wherein ring
B.sub.1 is a substituted or unsubstituted 6-membered aryl ring, for
example a substituted or unsubstituted phenyl ring.
[0099] An embodiment includes compounds of Formula I, wherein ring
B.sub.1 is a substituted or unsubstituted cycloalkyl ring.
[0100] In an embodiment of the present invention B.sub.1 is
selected from substituted or unsubstituted: cyclobutyl, cyclopentyl
or cyclohexyl and n is 0.
[0101] In an alternate embodiment, B.sub.1 is selected from
substituted or unsubstituted phenyl, and n is 0.
[0102] An embodiment includes compounds of Formula I where R.sup.1
is hydrogen or methyl.
[0103] An embodiment includes compounds of Formula I, wherein
R.sup.1 is hydrogen.
[0104] An embodiment includes compounds of Formula I, wherein
R.sup.1 is methyl.
[0105] An embodiment includes compounds of Formula I, wherein
B.sub.2 is a substituted or unsubstituted polycyclic ring system,
for example a 9- or 10-membered polycyclic ring system.
[0106] In an embodiment of the present invention B.sub.2 is:
##STR00017##
[0107] wherein B.sub.3 is a 3- to 8-membered substituted or
unsubstituted heterocyclyl ring.
[0108] B.sub.3 may also be a 5- or 6-membered substituted or
unsubstituted heterocyclyl ring. Optionally, B.sub.3 is pyrolidine,
morpholine, piperidine, or piperazine.
[0109] Preferably B.sub.3 is pyrolidine or morpholine. Accordingly,
B.sub.2 may be:
##STR00018##
[0110] An embodiment includes compounds of Formula I, wherein n is
=0.
[0111] An embodiment includes compounds of Formula I, wherein n is
=1.
[0112] An embodiment includes compounds of Formula I, wherein R is
a substituted or unsubstituted 6-membered aryl ring, for example a
substituted or unsubstituted phenyl ring.
[0113] An embodiment includes compounds of Formula I, wherein R is
a substituted or unsubstituted 5- or 6-heteroaryl ring.
[0114] An embodiment includes compounds of Formula I, wherein R is
a substituted or unsubstituted 5-membered heteroaryl ring.
[0115] An embodiment includes compounds of Formula I, wherein R is
a substituted or unsubstituted 6-membered heteroaryl ring.
[0116] An embodiment includes compounds of formula I where X--Y is
selected from --CH.sub.2--NH--Y, --CH.sub.2--NR.sup.2--Y,
--C(O)--NR.sup.2--Y, --NR.sup.2C(O)--Y, --NR.sup.2SO.sub.2--Y,
--O--CH.sub.2--Y, --CH.sub.2-- NR.sup.3--Y, --CH.sub.2--Y wherein Y
is as defined herein.
[0117] An embodiment includes compounds of Formula I, where X--Y is
selected from --CH.sub.2--NH--Y, and wherein Y is as defined
herein.
[0118] An embodiment includes compounds of Formula I, where X--Y is
selected from --CH.sub.2--NR.sup.2--Y, and wherein R.sup.2 and Y
are as defined herein.
[0119] An embodiment includes compounds of Formula I, where X--Y is
selected from --C(O)--NR.sup.2--Y, and wherein R.sup.2 and Y are as
defined herein.
[0120] An embodiment includes compounds of Formula I, where X--Y is
selected from --NR.sup.2C(O)--Y, and wherein R.sup.2 and Y are as
defined herein.
[0121] An embodiment includes compounds of Formula I, where X--Y is
selected from --NR.sup.2SO.sub.2--Y, and wherein R.sup.2 and Y are
as defined herein.
[0122] An embodiment includes compounds of Formula I, where X--Y is
selected from --O--CH.sub.2--Y, and wherein Y is as defined
herein.
[0123] An embodiment includes compounds of Formula I, where X--Y is
selected from --CH.sub.2--NR.sup.3--Y, and wherein R.sup.3 and Y
are as defined herein.
[0124] An embodiment includes compounds of Formula I, where X--Y is
selected from --CH.sub.2--Y, and wherein Y is as defined
herein.
[0125] In an embodiment of the present invention B.sub.1 is
selected from substituted or unsubstituted: cyclobutyl,
cyclopentyl, cyclohexyl or phenyl.
[0126] In an alternate embodiment, B.sub.1 is selected from
substituted or unsubstituted: cyclobutyl, cyclopentyl, cyclohexyl
or phenyl, and n is 0.
[0127] More preferred embodiment includes compounds of Formula I
where, wherein L-E is selected from the group consisting of:
##STR00019##
[0128] An embodiment includes compounds of Formula I where L-E is
selected from the group consisting of:
##STR00020##
[0129] An alternate embodiment includes compounds of Formula I,
wherein L-E is selected from:
##STR00021##
[0130] An embodiment of the present invention includes compounds of
Formula I where L-E is selected from:
##STR00022##
[0131] An embodiment of the present invention also includes
compounds of Formula I wherein E is selected from:
##STR00023##
[0132] An embodiment of the present invention includes compounds of
Formula I, where E is
##STR00024##
[0133] An alternate embodiment includes compounds of Formula I,
where X--Y is selected from:
##STR00025##
[0134] An embodiment of the present invention includes compounds of
Formula I, where X--Y is selected from:
##STR00026##
[0135] An embodiment of the present invention includes compounds of
Formula I, where X--Y is selected from:
##STR00027##
[0136] An embodiment of the present invention includes compounds of
Formula I, wherein X--Y is
##STR00028##
[0137] An embodiment of the present invention includes compounds of
Formula I, wherein X--Y is selected from:
##STR00029##
[0138] An embodiment of the present invention compounds of Formula
I, wherein X--Y is selected from:
##STR00030##
[0139] An embodiment of the present invention includes compounds of
Formula I, wherein X--Y is selected from:
##STR00031##
[0140] An embodiment of the present invention includes compounds of
Formula I, wherein X--Y is
##STR00032##
[0141] An embodiment of the present invention includes compounds of
Formula I where, wherein R is selected from the group consisting
of:
##STR00033## ##STR00034##
[0142] An embodiment of the present invention includes compounds of
Formula I where R is selected from:
##STR00035##
[0143] An embodiment of the present invention includes compounds of
Formula I, wherein R is selected from the group consisting of:
##STR00036##
[0144] An embodiment of the present invention includes a compound
having the chemical structure of Formula IIa
##STR00037##
[0145] wherein
[0146] R is selected from substituted or unsubstituted 5- and
6-membered aryl ring or substituted or unsubstituted 5- and
6-membered heteroaryl ring;
[0147] X--Y is selected from the group consisting of:
--CH.sub.2--NH--Y, --CH.sub.2--NR.sup.2--Y,
--CH.sub.2--NR.sup.3--Y, --NR.sup.2C(O)--Y, --C(O)NR.sup.2--Y, or
--CH.sub.2--Y;
[0148] wherein [0149] R.sup.2 is selected from hydrogen, C.sub.1-6
alkyl chain or 3- to 8-membered cycloalkyl ring; [0150] R.sup.3 is
selected from --C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4;
wherein m is an integer from 1 to 2; [0151] R.sup.4 is selected
from C.sub.1-6 alkyl chain or 3- to 8-membered cycloalkyl ring;
[0152] Y is selected from the group consisting of hydrogen,
halogen, substituted or unsubstituted C.sub.1-6 alkyl chain,
substituted or unsubstituted C.sub.2-6 alkenyl chain, substituted
or unsubstituted C.sub.2-6 alkynyl chain, substituted or
unsubstituted heteroalkyl chain of 2 to 6 atoms, substituted or
unsubstituted 3- to 8-membered cycloalkyl ring, substituted or
unsubstituted 3- to 8-membered heterocyclyl ring, substituted or
unsubstituted 5-, and 6-membered aryl ring, substituted or
unsubstituted 5-, and 6-membered heteroaryl ring, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl;
[0153] n.sub.1 is an integer from 0 to 3;
[0154] n.sub.2 is an integer from 1 to 3; and
[0155] R.sup.1 is selected from hydrogen, C.sub.1-6 alkyl chain or
3- to 8-membered cycloalkyl ring.
[0156] The compound of Formula IIa is preferably the compound
represented by Formula IIa or a pharmaceutically acceptable salt or
solvate thereof. It may just be the simple compound of Formula IIa
in one embodiment.
[0157] An embodiment of the present invention includes a compound
having the chemical structure of Formula IIb
##STR00038##
[0158] wherein
[0159] R is selected from substituted or unsubstituted 5- and
6-membered aryl ring or substituted or unsubstituted 5- and
6-membered heteroaryl ring;
[0160] X--Y is selected from the group consisting of:
--CH.sub.2--NH--Y, --CH.sub.2--NR.sup.2--Y,
--CH.sub.2--NR.sup.3--Y, --NR.sup.2C(O)--Y, --C(O)NR.sup.2--Y, or
--CH.sub.2--Y;
[0161] wherein [0162] R.sup.2 is selected from hydrogen, C.sub.1-6
alkyl chain or 3- to 8-membered cycloalkyl ring; [0163] R.sup.3 is
selected from --C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4;
wherein m is an integer from 1 to 2; [0164] R.sup.4 is selected
from C.sub.1-6 alkyl chain or 3- to 8-membered cycloalkyl ring;
[0165] Y is selected from the group consisting of hydrogen,
halogen, substituted or unsubstituted C.sub.1-6 alkyl chain,
substituted or unsubstituted C.sub.2-6 alkenyl chain, substituted
or unsubstituted C.sub.2-6 alkynyl chain, substituted or
unsubstituted heteroalkyl chain of 2 to 6 atoms, substituted or
unsubstituted 3- to 8-membered cycloalkyl ring, substituted or
unsubstituted 3- to 8-membered heterocyclyl ring, substituted or
unsubstituted 5-, and 6-membered aryl ring, substituted or
unsubstituted 5-, and 6-membered heteroaryl ring, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl;
[0166] X.sup.1 is selected from hydrogen or halogen; and
[0167] R.sup.1 is selected from hydrogen, C.sub.1-6alkyl chain or
3- to 8-membered cycloalkyl ring.
[0168] The compound of Formula IIb is preferably the compound
represented by Formula IIb or a pharmaceutically acceptable salt or
solvate thereof. It may just be the simple compound of Formula IIb
in one embodiment.
[0169] An embodiment of the present invention includes a compound
having the chemical structure of Formula IIc
##STR00039##
[0170] wherein
[0171] R is selected from substituted or unsubstituted 5- and
6-membered aryl ring or substituted or unsubstituted 5- and
6-membered heteroaryl ring;
[0172] X--Y is selected from the group consisting of: [0173]
CH.sub.2--NH--Y, --CH.sub.2--NR.sup.2--Y, --CH.sub.2--NR.sup.3--Y,
--NR.sup.2C(O)--Y, --C(O)NR.sup.2--Y, or --CH.sub.2--Y;
[0174] wherein [0175] R.sup.2 is selected from hydrogen, C.sub.1-6
alkyl chain or 3- to 8-membered cycloalkyl ring; [0176] R.sup.3 is
selected from --C(O)R.sup.4, --C(O)OR.sup.4 or --S(O).sub.mR.sup.4;
wherein m is an integer from 1 to 2; [0177] R.sup.4 is selected
from C.sub.1-6 alkyl chain or 3- to 8-membered cycloalkyl ring;
[0178] Y is selected from the group consisting of hydrogen,
halogen, substituted or unsubstituted C.sub.1-6 alkyl chain,
substituted or unsubstituted C.sub.2-6 alkenyl chain, substituted
or unsubstituted C.sub.2-6 alkynyl chain, substituted or
unsubstituted heteroalkyl chain of 2 to 6 atoms, substituted or
unsubstituted 3- to 8-membered cycloalkyl ring, substituted or
unsubstituted 3- to 8-membered heterocyclyl ring, substituted or
unsubstituted 5-, and 6-membered aryl ring, substituted or
unsubstituted 5-, and 6-membered heteroaryl ring, substituted or
unsubstituted aralkyl, or substituted or unsubstituted
heteroaralkyl; and
[0179] ring B.sub.3 is a 3- to 8-membered substituted or
unsubstituted heterocyclic ring.
[0180] The compound of Formula IIc is preferably the compound
represented by Formula IIc or a pharmaceutically acceptable salt or
solvate thereof. It may just be the simple compound of Formula IIc
in one embodiment.
[0181] Compounds of Formula I can exist as tautomers. For example,
compounds of Formula I can exist in the following tautomeric forms
and both tautomeric forms comprise part of the present
invention:
##STR00040##
[0182] wherein R, X, Y, L and E are as defined above.
[0183] In an embodiment of the present invention compounds are
selected from the group consisting of
##STR00041##
[0184] and pharmaceutically acceptable salts, solvates, solvate of
salts, stereoisomers, tautomers, isotopes, prodrugs, and complex or
biologically active metabolites thereof.
[0185] The compounds of the present invention may have activity as
inhibitors of protein kinases including tyrosine protein kinases.
Most particularly, compounds of the present invention may inhibit
ITK enzyme and ITK-dependent cellular functions.
[0186] In an embodiment of the present invention compounds of
Formula I may be formulated into a pharmaceutical composition which
comprises an effective amount of a compound of the present
invention with a pharmaceutically acceptable diluent or
carrier.
[0187] According to the present invention there is provided a
pharmaceutical composition which comprises a compound of Formula I,
or a pharmaceutically acceptable salt or solvate thereof, in
association with at least one pharmaceutically acceptable
excipient, diluent or carrier.
[0188] The pharmaceutical compositions may be in a conventional
pharmaceutical form suitable for oral administration (e.g.,
tablets, capsules, granules, powders and syrups), parenteral
administration (e.g., injections (intravenous, intramuscular, or
subcutaneous)), drop infusion preparations, inhalation, eye lotion,
topical administration (e.g., ointment), or suppositories.
[0189] Regardless of the route of administration selected, the
compounds may be formulated into pharmaceutically acceptable dosage
forms by conventional methods known to those skilled in the
art.
[0190] The term "compound" refers also to its pharmaceutically
acceptable salt, solvate, solvate of salt, stereoisomer, tautomer,
isotope, prodrug, complex or biologically active metabolite
thereof.
[0191] The term "pharmaceutically effective amount" refers to any
amount of the composition for the prevention and treatment of
humans that is effective in preventing or treating a disease or
condition associated with protein kinase activity.
[0192] The phrase "pharmaceutically acceptable" is employed herein
to refer to those ligands, materials, compositions, and/or dosage
forms which are, within the scope of sound medical judgment,
suitable for use in contact with the tissues of human beings and
animals without excessive toxicity, irritation, allergic response,
or other problem or complication, commensurate with a reasonable
benefit/risk ratio.
[0193] The phrase "pharmaceutically acceptable carrier" as used
herein means a pharmaceutically acceptable material, composition,
or vehicle, such as a liquid or solid filler, diluent, excipient,
solvent or encapsulating material. Each carrier must be acceptable
in the sense of being compatible with the other ingredients of the
formulation, including the active ingredient, and not injurious or
harmful to the patient. Some examples of materials which can serve
as pharmaceutically acceptable carriers include: (1) sugars, such
as lactose, glucose, and sucrose; (2) starches, such as corn
starch, potato starch, and substituted or unsubstituted
.beta.-cyclodextrin; (3) cellulose, and its derivatives, such as
sodium carboxymethyl cellulose, ethyl cellulose, and cellulose
acetate; (4) powdered tragacanth; (5) malt; (6) gelatin; (7) talc;
(8) excipients, such as cocoa butter and suppository waxes; (9)
oils, such as peanut oil, cottonseed oil, safflower oil, sesame
oil, olive oil, corn oil, and soybean oil; (10) glycols, such as
propylene glycol; (11) polyols, such as glycerin, sorbitol,
mannitol, and polyethylene glycol; (12) esters, such as ethyl
oleate and ethyl laurate; (13) agar; (14) buffering agents, such as
magnesium hydroxide and aluminum hydroxide; (15) alginic acid; (16)
pyrogen-free water; (17) isotonic saline; (18) Ringer's solution;
(19) ethyl alcohol; (20) phosphate buffer solutions; and (21) other
non-toxic compatible substances employed in pharmaceutical
formulations. For oral formulations, "pharmaceutically acceptable
carrier" such as cellulose, calcium silicate, corn starch, lactose,
sucrose, dextrose, calcium phosphate, stearic acid, magnesium
stearate, calcium stearate, gelatin, talc, surfactants, suspending
agents, emulsifiers, diluents, and others may be used. For
injectable formulations, "pharmaceutically acceptable carrier" such
as water, saline, glucose solution, glucose solution analogs,
alcohols, glycols, ethers (e.g., polyethylene glycol 400), oils,
fatty acids, fatty acid esters, glycerides, surfactants, suspending
agents, emulsifiers, and others may be used.
[0194] The term "pharmaceutically acceptable salt" refers to the
relatively non-toxic, inorganic and organic acid addition salts of
the compound(s). These salts can be prepared in situ during the
final isolation and purification of the compound(s), or by
separately reacting a purified compound(s) in its free base form
with a suitable organic or inorganic acid, and isolating the salt
thus formed. Representative salts include the hydrobromide,
hydrochloride, sulfate, bisulfate, phosphate, nitrate, acetate,
valerate, oleate, palmitate, stearate, laurate, benzoate, lactate,
phosphate, tosylate, citrate, maleate, fumarate, succinate,
tartrate, naphthylate, mesylate, glucoheptonate, lactobionate,
laurylsulphonate salts, and amino acid salts, and the like (See,
for example, Berge et al. (1977) "Pharmaceutical Salts", J. Pharm.
Sci. 66: 1-19).
[0195] In other cases, the compounds of the present invention may
contain one or more acidic functional groups and, thus, are capable
of forming pharmaceutically acceptable salts with pharmaceutically
acceptable bases. The term "pharmaceutically acceptable salts" in
these instances refers to the relatively non-toxic inorganic and
organic base addition salts of a compound(s). These salts can
likewise be prepared in situ during the final isolation and
purification of the compound(s), or by separately reacting the
purified compound(s) in its free acid form with a suitable base,
such as the hydroxide, carbonate, or bicarbonate of a
pharmaceutically acceptable metal cation, with ammonia, or with a
pharmaceutically acceptable organic primary, secondary, or tertiary
amine. Representative alkali or alkaline earth salts include the
lithium, sodium, potassium, calcium, magnesium, and aluminum salts,
and the like. Representative organic amines useful for the
formation of base addition salts include ethylamine, diethylamine,
ethylenediamine, ethanolamine, diethanolamine, piperazine, and the
like (see, for example, Berge et al., supra).
[0196] As used herein, the term "affinity tag" means a ligand or
group, linked either to a compound of the present invention or to a
protein kinase domain, that allows the conjugate to be extracted
from a solution.
[0197] The term "spirocycle", as used herein, refers to bicyclic
rings system connected through just one atom. The rings can be
different or identical. The connecting atom, also called spiroatom,
is preferably a quaternary carbon. Spirocycle may be optionally
substituted with one or more substituents as defined herein.
[0198] The term "alkyl", as used herein, refers to a saturated
hydrocarbon chain. Alkyl chains may be straight or branched. Alkyl
chains may be optionally substituted with one or more substituents
as defined herein. Representative alkyl groups include methyl,
ethyl, propyl, (n-propyl and isopropyl) butyl (n-butyl, t-butyl and
isobutyl), pentyl (n-pentyl and isopentyl), hexyl and the like. In
certain preferred embodiments, alkyl substituents are lower alkyl
groups, e.g., having from 1 to 6 carbon atoms, and in certain
embodiments having C.sub.1 to C.sub.3 carbon atoms.
[0199] The term "alkenyl", as used herein, refers to an unsaturated
hydrocarbon chain analogous in length and possible substitution to
the "alkyl" described above, but that contain at least one double
bond. Representative alkenyl groups include vinyl, propen-2-yl,
crotyl, isopenten-2-yl, 1,3-butadien-2-yl, 2,4-pentadienyl, and
1,4-pentadien-3-yl. In certain preferred embodiments, alkenyl
substituents are lower alkenyl groups, e.g., having from 2 to 6
carbon atoms.
[0200] The term "alkynyl", as used herein, refers to an unsaturated
hydrocarbon chain analogous in length and possible substitution to
the "alkyl" described above, but that contain at least one triple
bond. Representative alkynyl groups include ethynyl, 1- and
3-propynyl, and 3-butynyl. In certain preferred embodiments,
alkynyl substituents are lower alkyl groups, e.g., having from 2 to
6 carbon atoms.
[0201] The term, "alkylene", as used herein, refers to an alkyl
group with two open valencies.
[0202] The term "heteroalkyl", as used herein, refers to a
saturated or partially saturated chain containing one to four
heteroatoms selected from the group consisting of O, N and S, and
wherein the nitrogen and sulfur atoms may optionally be oxidized
and the nitrogen atom may optionally be quaternized. Heteroalkyl
chains may be straight or branched. Heteroalkyl chains may be
optionally substituted with one or more substituents as defined
herein. The heteroatom(s) O, N and S may be placed at any interior
position of the heteroalkyl group. Up to two heteroatoms may be
consecutive.
[0203] The term "cycloalkyl", as used herein, alternatively
"carbocycle" and "carbocyclyl" refers to a saturated or partially
saturated non-aromatic ring, more preferably 3- to 8-membered ring,
in which each atom of the ring is carbon or; refers to a spirocycle
where each ring is a saturated or partially saturated hydrocarbon
ring and the spiro atom is carbon. Cycloalkyl rings may be
optionally substituted with one or more substituents as defined
herein. The term "cycloalkyl", "carbocycle" or "carbocyclyl" also
include polycyclic ring systems having two or more cyclic rings in
which two or more carbons are common to two adjoining rings wherein
at least one of the rings is cycloalkyl, e.g., the other cyclic
rings can be aryls, heteroaryls, and/or heterocyclyls.
Representative cycloalkyl rings include cyclopropyl, cyclobutyl,
cyclopentyl, cyclohexyl, 1-cyclohexenyl, 3-cyclohexen-1-yl,
cycloheptyl, tetrahydronaphthyl, indanyl, adamantly and
combinations thereof.
[0204] The term "heterocyclyl" alternatively "heterocyclic", as
used herein, refers to non-aromatic ring structures, more
preferably 3- to 8-membered rings, whose ring structures include
one to four heteroatoms or; refers to a spirocycle where the
bicyclic rings system contains 1 to 4 heteroatoms. Heterocyclyl
rings may be optionally substituted with one or more substituents
as defined herein. The term "heterocyclyl" or "heterocyclic" also
include polycyclic ring systems having two or more cyclic rings in
which two or more carbons are common to two adjoining rings wherein
at least one of the rings is heterocyclic, e.g., the other cyclic
rings can be cycloalkyls, aryls and/or heteroaryls. Heterocyclyl
groups include, for example, tetrahydrofuran, piperidine,
piperazine, pyrrolidine, morpholine, lactones, lactams and
combinations thereof.
[0205] The term "aryl", as used herein, refers to 5-, 6-, and
7-membered aromatic rings in which each atom of the ring is carbon.
Aryl rings may be optionally substituted with one or more
substituents as defined herein. The term "aryl" also includes
polycyclic ring systems having two or more cyclic rings in which
two or more carbons are common to two adjoining rings wherein at
least one of the rings is aryl, e.g., the other cyclic rings can be
cycloalkyls, heteroaryls, and/or heterocyclyls. Aryl groups
include, for example, benzene, naphthalene, phenanthrene,
anthracene and combinations thereof.
[0206] The term "heteroaryl" as used herein, refers to 5-, 6-, and
7-membered aromatic rings whose ring structures include one to four
heteroatoms. Heteroaryl rings may be optionally substituted with
one or more substituents as defined herein. The term "heteroaryl"
also includes polycyclic ring systems having two or more cyclic
rings in which two or more carbons are common to two adjoining
rings wherein at least one of the rings is heteroaryl, e.g., the
other cyclic rings can be cycloalkyls, aryls and/or heterocyclyls.
Heteroaryl groups include, for example, pyrrole, furan, thiophene,
imidazole, isoxazole, oxazole, thiazole, triazole, pyrazole,
pyridine, pyrazine, pyridazine and pyrimidine, and combinations
thereof.
[0207] The terms "polycyclyl" alternatively "polycyclic", as used
herein, refer to two or more rings (e.g., cycloalkyls, aryls,
heteroaryls, and/or heterocyclyls) in which two or more carbons are
common to two adjoining rings, e.g., the rings are "fused rings".
Polycyclyl rings may be optionally substituted with one or more
substituents as defined herein.
[0208] The term "aralkyl", as used herein, refers to an alkyl group
substituted with an aryl group, for example --(CH.sub.2).sub.p--Ar
and p is an integer from 1 to 8 and Ar may be selected from any
suitable aryl ring system, for example phenyl or napthyl. For
example "aralkyl" may be benzyl.
[0209] The term "heteroaralkyl", as used herein, refers to an alkyl
group substituted with a heteroaryl group, for example
--(CH.sub.2).sub.p--Het and p is an integer from 1 to 8 and Het is
any suitable heteroaryl ring system, such as those discussed in the
above paragraphs.
[0210] The term "alkoxy", as used herein, refers to an alkyl ether
substituent, wherein the term alkyl is as defined above.
Representative alkoxy groups include methoxy, ethoxy, propoxy,
tert-butoxy and combinations thereof.
[0211] The term "ether", as used herein, refers to an oxy group
bridging two moieties linked at carbon atoms.
[0212] The term "alkoxyalkyl", as used herein, refers to an alkyl
group substituted with an alkoxy group, thereby forming ether.
[0213] The term "halo" or "halogen", as used herein, refers to
fluorine, chlorine, bromine and iodine.
[0214] The term "heteroatom", as used herein, refers to an atom of
any element other than carbon or hydrogen. Preferred heteroatoms
are nitrogen, oxygen, and sulfur.
[0215] The term "hydrocarbon", as used herein, refers to a group
consisting entirely of carbon and hydrogen.
[0216] The term "haloalkyl", as used herein, refers to an alkyl
substituent wherein one or more hydrogens are replaced by a
halogen.
[0217] The term "carbonyl", as used herein, when alone includes
formyl --CH(O) and in combination is a --C(O) group.
[0218] The term "carboxyl", alternatively "carboxy", as used
herein, refers to --C(O)OH or the corresponding "carboxylate"
anion, such as in a carboxylic acid salt.
[0219] The term "acyl", as used herein, refers to --C(O)R wherein R
is alkyl, heteroalkyl, haloalkyl, cycloalkyl, heterocyclyl, aryl or
heteroaryl as defined above. Representative acyl groups include
acetyl, trifluoroacethyl, benzoyl, and the combinations
thereof.
[0220] The term "alkoxycarbonyl", as used herein, refers to
--C(O)OR wherein R is alkyl as defined above. Representative
alkoxycarbonyl groups include methoxycarbonyl, ethoxycarbonyl, and
the combinations thereof.
[0221] The term "alkylthio", as used herein, refers to a thioether
--SR wherein R is alkyl as defined above. Representative alkylthio
groups include methylthio, ethylthio and combinations thereof.
[0222] The term "sulfonate", as used herein, refers to a salt or
ester of a sulfonic acid --OSO.sub.2R wherein R is alkyl,
heteroalkyl, haloalkyl, cycloalkyl, heterocyclyl, aryl or
heteroaryl as defined above. Representative sulfonate groups
include mesylate, besylate, tosylate, and combinations thereof.
[0223] The term "sulfonyl", as used herein, refers to --SO.sub.2R
wherein R is alkyl, heteroalkyl, haloalkyl, cycloalkyl,
heterocyclyl, aryl or heteroaryl as defined above. Representative
sulfonate groups include methylsufonyl, ethylsulfonyl, and
combinations thereof.
[0224] The term "sulfamoyl", as used herein, refers to
--SO.sub.2NH.sub.2.
[0225] The term "sulfonamido", as used herein, refers to
--S(O).sub.2NRR' wherein R and R' are independently selected from
alkyl, heteroalkyl, haloalkyl, cycloalkyl, heterocyclyl, aryl and
heteroaryl as defined above. R and R' may combine to form a
heterocyclyl ring.
[0226] The term "amino", as used herein, refers to --NRR' wherein R
and R' are independently selected from hydrogen, alkyl,
heteroalkyl, haloalkyl, cycloalkyl, heterocyclyl, aryl and
heteroaryl as defined above. R and R' may combine to form a
heterocyclyl ring.
[0227] The term "amido" alternatively "amide", as used herein,
refers to --C(O)NRR' wherein R and R' are independently selected
from hydrogen, alkyl, heteroalkyl, haloalkyl, cycloalkyl,
heterocyclyl, aryl or heteroaryl as defined above. R and R' may
combine to form an heterocyclyl ring.
[0228] The term "substituted" refers to moieties having
substituents replacing hydrogen on one or more atoms of the
backbone. It will be understood that "substitution" or "substituted
with" includes the implicit proviso that such substitution is in
accordance with permitted valence of the substituted atom and the
substituent, and that the substitution results in a stable
compound, e.g., which does not spontaneously undergo transformation
such as by rearrangement, cyclization, elimination, etc. As used
herein, the term "substituted" is contemplated to include all
permissible substituents of organic compounds. The permissible
substituents can be one or more and the same or different for
appropriate organic compounds. For purposes of this invention, the
heteroatoms such as nitrogen may have hydrogen substituents and/or
any permissible substituents of organic compounds described herein
which satisfy the valences of the heteroatoms.
[0229] Substituents can include, for example, an alkyl, an alkenyl,
an alkynyl, a haloalkyl, a heteroalkyl, a cycloalkyl, a
heterocyclyl, an aryl, a heteroaryl, a halogen, a hydroxyl, a
carbonyl, carboxyl, an alkoxycarbonyl, a formyl, or an acyl, a
thiocarbonyl (such as a thioester, a thioacetate, or a
thioformate), an alkoxy, a phosphoryl, a phosphate, a phosphonate,
a phosphinate, an amino, an amido, an amidine, an imine, a cyano, a
nitro, an azido, a sulfhydryl, an alkylthio, a sulfate, a
sulfonate, a sulfamoyl, a sulfonamido, a sulfonyl. It will be
understood by those skilled in the art that the substituents can
themselves be substituted, if appropriate.
[0230] As used herein, the term "probe" means a compound of the
invention which is labeled with either a detectable label or an
affinity tag, and which is capable of binding, either covalently or
non-covalently, to a protein kinase domain. When, for example, the
probe is non-covalently bound, it may be displaced by a test
compound. When, for example, the probe is bound covalently, it may
be used to form cross-linked adducts, which may be quantified and
inhibited by a test compound.
[0231] The term "prodrug" denotes a compound that is a drug
precursor which, upon administration to a subject, is converted
within the body into a compound of Formula I, Formula IIa, Formula
IIb or Formula IIc. Prodrugs of compounds of Formula I, Formula
IIa, Formula IIb, Formula IIc or pharmaceutically acceptable salts
or solvates thereof are within the scope of this disclosure.
[0232] The term "biologically active metabolite" means a
pharmacologically active product produced through metabolism in the
body of a specified compound or salt thereof.
[0233] The term "subject" or "patient" means a human or an animal
subject for prevention or treatment.
[0234] In an embodiment the use is ex vivo, for example in vitro,
such as an in vitro assay.
[0235] The term "combination" within the meaning of this invention
includes the simultaneous, sequential or separate use of the
components or ingredients.
[0236] Compounds of the invention also include all isotopes of
atoms present in the Intermediates and/or final Compounds. Isotopes
include those atoms having the same atomic number but different
mass numbers. For example, isotopes of hydrogen include deuterium
and tritium.
[0237] Therapeutic Uses and Applications
[0238] The compounds of the present invention are inhibitors of
protein kinase activity and are suitable for use in therapy.
[0239] An aspect of the present invention provides a method of
inhibiting protein kinase activity in a cell, the method comprising
administering to said cell compound of Formula I as defined herein,
or a pharmaceutically acceptable salt or solvate thereof.
[0240] In a further aspect, the present invention provides a method
of inhibiting protein kinase in vitro or in vivo, said method
comprising contacting a cell with an effective amount of a compound
of Formula I, Formula IIa, Formula IIb, Formula IIc or a
pharmaceutically acceptable salt, solvate, solvate of salt,
stereoisomer, tautomer, isotope, prodrug, complex or biologically
active metabolite thereof.
[0241] A further aspect of the present invention provides a method
of inhibiting protein kinase activity in a human or animal subject
for treatment or prevention of protein kinase mediated disease, the
method comprising administering to said subject an effective amount
of a compound of Formula I, Formula IIa, Formula IIb or Formula IIc
as defined herein, or a pharmaceutically acceptable salt or solvate
of salt, stereoisomer, tautomer, isotope, prodrug, complex or
biologically active metabolite thereof.
[0242] The term "protein kinase mediated disease" is used herein
associated with abnormal or undesirable cellular responses
triggered or maintained by protein kinase-mediated events.
Furthermore, aberrant activation, mutation or excessive expressions
of various protein kinases are implicated in the mechanism of
multiple diseases and disorders. These diseases include, but are
not limited to cancer, autoimmune disease, inflammation, viral
infection and neurological disease.
[0243] In one embodiment of this invention the disclosed compounds
are used in the treatment of a patient that suffers from a disease
or disorder that can be treated by kinase inhibition. The compound
disclosed herein and/or pharmaceutically acceptable salt thereof
can inhibit one or more kinases including but not limited to ITK,
RLK (also known as TXK), BLK, BMX, BTK, JAK3, and/or TEC.
[0244] In one embodiment, the protein kinase inhibited by compounds
of the present invention is ITK, BTK, BMX, RLK, or TEC singly or in
combination.
[0245] The compounds of the present invention may be suitable for
use in the treatment of or prevention of diseases that involve ITK,
BTK, BMX, RLK or TEC, i.e. diseases that involve T cells and/or NK
cells, for example, cancer, autoimmune diseases, allergic diseases,
inflammatory diseases, viral infection and combinations
thereof.
[0246] In one embodiment, a compound disclosed herein and/or
pharmaceutically acceptable salt thereof is administered to a
patient in need or recognized need thereof to prevent or treat an
inflammatory disorder. In another embodiment, a compound disclosed
herein and/or pharmaceutically acceptable salt thereof is
administered to a patient in need or recognized need thereof to
prevent or treat an inflammatory disorder characterized by
excessive or undesired cytokine activity or production. In yet
another embodiment, a compound and/or pharmaceutically acceptable
salt thereof is administered to a patient in need or recognized
need thereof to prevent or treat lung inflammation, allergic
asthma, pneumonia, psoriasis, atopic dermatitis or a combination
thereof. In yet another embodiment a compound and/or
pharmaceutically acceptable salt thereof is administered to a
patient in need of or recognized need thereof to prevent or treat
uveitis or dry eye disease.
[0247] Examples of an autoimmune disease in the present invention
include arthritis, systemic lupus erythematosus, rheumatoid
arthritis, psoriasis, psoriatic arthritis, Still's disease,
juvenile arthritis, type I diabetes, inflammatory bowel disease,
myasthenia gravis, Hashimoto's thyroiditis, Ord's thyroiditis,
Basedow's disease, Sjogren's syndrome, multiple sclerosis,
Guillain-Barre syndrome, acute disseminated encephalomyelitis,
Addison disease, opsoclonus-myoclonus syndrome, ankylosing
spondylitis, antiphospholipid antibody syndrome, aplastic anemia,
autoimmune hepatitis, celiac disease, Goodpasture's syndrome,
idiopathic thrombocytopenic purpura, optic neuritis, scleroderma,
primary biliary cirrhosis, Reiter's disease, Takayasu arteritis,
temporal arteritis, warm autoimmune hemolytic anemia, Wegener
granuloma, alopecia universalis, Burchett disease, chronic fatigue
syndrome, dysautonomia, endometriosis, interstitial cystitis,
myotonia, vulvodynia, pemphigus, and combinations thereof.
[0248] Examples of an allergic disease in the present invention
include allergy, anaphylaxis, allergic conjunctivitis, allergic
rhinitis, atopic dermatitis and the combinations thereof.
[0249] Examples of an inflammatory disease in the present invention
include asthma, appendicitis, blepharitis, bronchiolitis,
bronchitis, bursitis, cervicitis, cholangitis, cholecystitis,
colitis, conjunctivitis, cystitis, dacryoadenitis, dermatitis,
dermatomyositis, encephalitis, endocarditis, endometritis,
enteritis, epicondylitis, epididymitis, fasciitis, fibrositis,
gastritis, gastroenteritis, hepatitis, hidradenitis suppurativa,
inflammatory bowel disease, laryngitis, mastitis, meningitis,
myelitis, myocarditis, myositis nephritis, oophoritis, orchitis,
osteitis, osteoarthritis, pancreatitis, parotitis, pericarditis,
peritonitis, pharyngitis, pleuritis, phlebitis, pneumonia,
proctitis, prostatitis, pyelonephritis, rhinitis, salpingitis,
sinusitis, stomatitis, synovitis, tendinitis, tonsillitis, uveitis,
vaginitis, vasculitis, vulvitis, and combinations thereof.
[0250] Examples of a viral infection include HIV/AIDS, influenza
and combinations thereof.
[0251] Examples of cancer in the present invention include T-cell
lymphomas and T-cell leukemias including peripheral T-cell
lymphoma, Seazry syndrome/cutaneous T-cell lymphoma, acute
lymphoblastic leukemia, and adult T-cell leukemia/lymphoma.
Additional examples include NK/T-cell lymphoma, nasal type and
aggressive NK-cell leukemia, as well as melanoma and hepatocellular
carcinoma.
[0252] In one embodiment, the compound of Formula I, Formula IIa,
Formula IIb, Formula IIc or pharmaceutically acceptable salts,
solvates, solvates of salts, stereoisomers, tautomers, isotopes,
prodrugs, complexes, or biologically active metabolites thereof, is
acting by inhibiting one or more of the host cell kinases involved
in cell proliferation, cell survival, viral replication,
autoimmunity, an inflammatory disease or an infectious disease.
[0253] In further aspect of the present invention, is disclosed a
method for treating a subject suffering from a protein kinase
mediated disease or condition, comprising administering to the
subject a therapeutically effective amount of the compound of
Formula I, Formula IIa, Formula IIb, Formula IIc, or
pharmaceutically acceptable salt, solvate, solvate of salt,
stereoisomer, tautomer, isotope, prodrug, complex or biologically
active metabolite thereof, in combination with at least one
pharmaceutically acceptable carrier.
[0254] In further aspect of the present invention, the compound of
Formula I, Formula IIa, Formula IIb, Formula IIc or
pharmaceutically acceptable salts, solvates, solvates of salts,
stereoisomers, tautomers, isotopes, prodrugs, complexes, or
biologically active metabolites thereof, is acting as inhibitor of
cell kinases as anti-inflammatory, autoimmune modulators or
anti-cancer agents.
[0255] In a further aspect of the present invention, the compound
of Formula I, Formula IIa, Formula IIb, Formula IIc or
pharmaceutically acceptable salts, solvates, solvates of salts,
stereoisomers, tautomers, isotopes, prodrugs, complexes, or
biologically active metabolites thereof, is acting by inhibiting
one or more of the host cell kinases involved in T-cell function
proliferation or polarization.
[0256] The compounds of Formula I, Formula IIa, Formula IIb,
Formula IIc or pharmaceutically acceptable salts, solvates,
solvates of salts, stereoisomers, tautomers, isotopes, prodrugs,
complexes, or biologically active metabolites thereof are suitable
for use in the preparation of a medicament for inhibiting a protein
kinase activity selected from ITK, BTK, BMX, RLK and combinations
thereof in a subject.
[0257] The compounds of Formula I, Formula IIa, Formula IIb,
Formula IIc or pharmaceutically acceptable salts, solvates,
solvates of salts, stereoisomers, tautomers, isotopes, prodrugs,
complexes, or biologically active metabolites thereof and
pharmaceutically acceptable compositions of the present invention
can be employed in combination therapies, the compounds and
pharmaceutically acceptable compositions may have potential utility
in combination with other therapies for the treatment of cancer,
viral infections, immune, inflammatory, neurological diseases,
proliferative and allergic disorders. Example includes but not
limited to co-administration with steroids, leukotriene
antagonists, anti-histamines, anti-cancer, anti-viral, anti-biotic
agents or other protein kinase inhibitors. The anti-cancer agent
may be selected from the group consisting of: cell signal
transduction inhibitors, mitosis inhibitors, alkylating agents,
anti-metabolites, intercalating anticancer agents, topoisomerase
inhibitors, immunotherapic agents, anti-hormonal agents, and a
mixture thereof. The additional active pharmaceutical ingredient
used in the combination is appropriate for the disease being
treated and said additional active pharmaceutical ingredient is
administered together with the compounds of Formula I, Formula IIa,
Formula IIb, Formula IIc as a single dosage form or separately as
part of a multiple dosage form.
[0258] The compounds of the present invention are indicated both in
the therapeutic and/or prophylactic treatment of the
above-mentioned conditions. For the above-mentioned therapeutic
and/or prophylactic uses the dosage administered will vary with the
compound employed, the subject, the mode of administration, the
treatment desired and the disorder indicated. The daily dosage may
be between about 0.01 mg/kg to about 100 mg/kg and preferably from
about 1 mg/kg to about 25 mg/kg, of the subject body weight per
day, one or more times a day, to obtain the desired therapeutic
effect.
[0259] A pharmaceutical acceptable composition of the present
invention may be obtained by conventional procedures using
conventional pharmaceutical excipients, well known in the art. It
may typically comprise pharmaceutically acceptable additives,
carriers or excipients. The pharmaceutical composition of the
present invention may be formulated in accordance with conventional
methods, and may be prepared in the form of oral formulations such
as tablets, pills, powders, capsules, syrups, emulsions,
microemulsions and others, or parenteral formulations such as
intramuscular, intravenous or subcutaneous administrations.
[0260] For oral formulations, carriers or additives such as
cellulose, calcium silicate, corn starch, lactose, sucrose,
dextrose, calcium phosphate, stearic acid, magnesium stearate,
calcium stearate, gelatin, talc, surfactants, suspending agents,
emulsifiers, diluents, and others may be used. Solid dosage forms
for oral administration include capsules, tablets, pills, powders,
and granules. Liquid dosage forms for oral administration include,
but are not limited to, pharmaceutically acceptable emulsions,
microemulsions, solutions, suspensions, syrups and elixirs. The
liquid dosage forms may contain inert diluents and can also include
adjuvants such as wetting agents, emulsifying and suspending
agents, sweetening, flavoring, and perfuming agents.
[0261] The present invention contemplates compounds of Formula I,
Formula IIa, Formula IIb, Formula IIc or pharmaceutical salts
thereof. The invention also contemplates solvates, solvates of
salts, stereoisomers, tautomers, isotopes, prodrugs, complexes or
biologically active metabolites of the compounds of Formula I,
Formula IIa, Formula IIb and Formula IIc.
[0262] For Injectable formulations, sterile injectable aqueous or
oleaginous suspensions may be formulated according to the known art
using suitable dispersing or wetting agents and suspending agents.
The sterile injectable preparation may also be a sterile injectable
solution, suspension or emulsion in a nontoxic parenterally
acceptable diluent or solvent, for example, as a solution in
1,3-butanediol. Among the acceptable vehicles and solvents that may
be employed are water, Ringer's solution, U.S.P. and isotonic
sodium chloride solution. In addition, sterile, fixed oils are
conventionally employed as a solvent or suspending medium. For this
purpose any bland fixed oil can be employed including synthetic
mono- or diglycerides. In addition, fatty acids such as oleic acid
are used in the preparation of injectables.
[0263] The compounds of Formula I, Formula IIa, Formula IIb,
Formula IIc, or pharmaceutically acceptable salt, solvate, solvate
of salt, stereoisomer, tautomer, isotope, prodrug, complex, or
biologically active metabolites thereof and pharmaceutically
acceptable compositions of the present invention can be employed in
combination therapies, wherein the additional active pharmaceutical
ingredient is selected from the group comprising steroids,
leukotriene antagonists, anti-histamines, anti-cancer, anti-viral,
anti-biotic agents, protein kinase inhibitors and combinations
thereof.
[0264] A probe comprising the compound of Formula I, Formula IIa,
Formula IIb, Formula IIc covalently conjugated to a detectable
label or affinity tag for said compound. The probe, wherein the
detectable label is selected from the group consisting of: a
fluorescent moiety, a chemiluminescent moiety, a paramagnetic
contrast agent, a metal chelate, a radioactive isotope containing
moiety and biotin.
Specific Abbreviations Used
[0265] AIDS Acquired Immune Deficiency Syndrome [0266] ATP
Adenosine Triphosphate [0267] BLK B lymphocyte kinase [0268] BMX
Bone marrow-expressed kinase [0269] BTK Bruton's Tyrosine Kinase
[0270] DMSO Dimethyl sulfoxide [0271] EDTA
Ethylenediaminetetraacetic acid [0272] FCS Fetal Calf serum [0273]
HIV Human immunodeficiency virus [0274] JAK3 Janus Kinase [0275]
ITK Interleukin-2 inducible T-cell kinase [0276] NK/T-cell Natural
killer T-cell [0277] PBMC Peripheral blood mononuclear cells [0278]
PBS Phosphate buffered saline [0279] RPMI Roswell Park Memorial
Institute medium [0280] RLK/TXK Resting lymphocyte kinase [0281]
TEC Tyrosine kinase expressed in carcinoma [0282] Tec Family of
protein-tyrosine kinases [0283] MS mass spectrometry [0284] ml
milliliter [0285] .mu.l microliter [0286] mmol millimole [0287] THF
tetrahydrofuran [0288] DMF dimethylformamide [0289] MeOH methanol
[0290] EtOH ethanol [0291] THF tetrahydrofuran [0292] DCM
dichloromethane [0293] EtOAc Ethyl acetate [0294] AcOH acetic acid
[0295] K.sub.2CO.sub.3 Potassium carbonate [0296] NaH Sodium
hydride [0297] Pd/C Palladium on carbon [0298] TEA triethylamine
[0299] DIPEA diisopropylethylamine [0300] DEA diethylamine [0301]
NaHCO.sub.3 sodium bicarbonate [0302] Cs.sub.2CO.sub.3 cesium
carbonate [0303] NaBH(OAc).sub.3 sodium triacetoxyborohydride
[0304] CbzCl benzyl chloroformate [0305] MsCl methanesulfonyl
chloride [0306] Boc.sub.2O di-tert-butyl dicarbonate [0307] MeI
Iodomethane [0308] MgSO.sub.4 magnesium sulfate [0309] Zn Zinc dust
[0310] SO.sub.3 Sulfur trioxide [0311] BrCN cyanogen bromide [0312]
HBr hydrogen bromide [0313] HCl Hydrogen chloride [0314] TFA
trifluoroacetic acid [0315] HATU
(1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium
3-oxide hexafluorophosphate) [0316] HBTU
(2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium
hexafluorophosphate) [0317] Pd.sub.2dba.sub.3
Tris(dibenzylideneacetone)dipalladium(0) [0318] XPhos
2-Dicyclohexylphosphino-2',4',6'-triisopropyl biphenyl [0319]
NaN.sub.3 sodium azide
General Synthetic Methods
[0320] In the description of the synthetic methods described below
and in the referenced synthetic methods that are used to prepare
the starting materials, it is to be understood that all proposed
reaction conditions, including choice of solvent, reaction
atmosphere, reaction temperature, duration of the experiment and
workup procedures, can be selected by a person skilled in the
art.
[0321] The following section describes general synthetic method(s)
which may be useful in the preparation of compounds of the instant
invention.
[0322] Compounds of Formula I where L-E is selected from
##STR00042##
[0323] and X--Y is selected from --CH.sub.2--NH--Y
[0324] are prepared as described below:
[0325] Intermediate A3 is obtained by reacting commercially
available Intermediate A1 with an amine of formula A2 where ring
B.sub.1, n and R.sup.1 are as defined above and PG.sup.1 is a
suitable protecting group. Reductive amination of Intermediate A3
with an amine of formula YNH.sub.2 where Y is as defined above
provides Intermediate A4. Protection of the alkyl amino group with
a suitable protective group PG.sup.2 provides Intermediate A5.
Reduction of the nitro group provides Intermediate A6 which is then
cyclized to the corresponding aminobenzimidazole Intermediate A7.
Coupling of Intermediate A7 with an acid of formula RCO.sub.2H
under standard coupling conditions or with an activated acid of
formula RC(O)LG, where R is as defined above and LG is a leaving
group, provides Intermediate A8. Removal of PG.sup.1 protecting
group provides Intermediate A9.
[0326] Compounds of Formula I are then obtained from Intermediate
A9 by first coupling
[0327] Intermediate 9 with an acid of formula
##STR00043##
under standard coupling conditions or with an activated acid of
formula
##STR00044##
where R.sup.a, R.sup.b and Rc are as defined above and LG is a
leaving group followed by removal of PG.sup.2 protective group.
##STR00045## ##STR00046##
[0328] Compounds of Formula I where L-E is selected from
##STR00047##
and X--Y is selected from --CH.sub.2--NH--Y are prepared in a
similar manner by substituting
##STR00048##
with
##STR00049##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0329] Compounds of Formula I where L-E is selected from
##STR00050##
and X--Y is selected from --CH.sub.2--NR.sup.2--Y are prepared as
described below:
[0330] Reduction of Intermediate A3 provides Intermediate B1.
Protection of the alcohol group with a suitable protective group
PG.sup.3 provides Intermediate B2. Reduction of the nitro group
provides Intermediate B3 which is then cyclized to the
corresponding aminobenzimidazole Intermediate B4. Coupling of
Intermediate B4 with an acid of formula RCO.sub.2H under standard
coupling conditions or with an activated acid of formula RC(O)LG
where R is as defined above and LG is a leaving group provides
intermediate Intermediate B5. Removal of PG.sup.1 and PG.sup.3
protecting groups provides intermediate Intermediate B6. Coupling
of Intermediate B6 with an acid of formula
##STR00051##
under standard coupling conditions or with an activated acid of
formula
##STR00052##
where R.sup.a, R.sup.b and Rc are as defined above and LG is a
leaving group provides Intermediate B7 which is oxidized to provide
Intermediate B8. Reductive amination of Intermediate B8 with an
amine of formula Y--NHR.sup.2 where Y and R.sup.2 are as described
above provides compounds of Formula I.
##STR00053## ##STR00054##
[0331] Compounds of Formula I where L-E is selected from
##STR00055##
and X--Y is --CH.sub.2--NR.sup.2--Y are prepared in a similar
manner by substituting
##STR00056##
with
##STR00057##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0332] Compounds of Formula I wherein L-E is selected from
##STR00058##
and X--Y is selected from --C(O)NR.sup.2--Y are prepared as
described below:
[0333] Intermediate C3 is obtained by coupling commercially
available Intermediate C1 with an amine of formula YNHR.sup.2 where
Y and R.sup.2 are as defined above under standard coupling
conditions. Alternatively, Intermediate C3 is obtained in a 2 steps
sequence by coupling Intermediate C1 with an amine of formula
YNH.sub.2 where Y is as defined above under standard coupling
conditions followed by reacting Intermediate C2 with an
Intermediate of formula R.sup.2LG, where R.sup.2 is as defined
above and LG is a leaving group, in a presence of a base.
Intermediate C4 is obtained by reacting Intermediate C2 or C3 with
an amine of formula A2 where ring B.sub.1, n and R.sup.1 are as
defined above and PG.sup.1 is a suitable protecting group.
Reduction of the nitro group provides Intermediate C5 which is then
cyclized to the corresponding aminobenzimidazole Intermediate C6.
Coupling of Intermediate C6 with an acid of formula RCO.sub.2H
under standard coupling conditions or with an activated acid of
formula RC(O)LG, where R is as defined above and LG is a leaving
group, provides Intermediate C7. Removal of PG.sup.1 protecting
group provides Intermediate C8. Compounds of Formula I are then
obtained by coupling Intermediate C8 with an acid of formula
##STR00059##
under standard coupling conditions or with an activated acid of
formula
##STR00060##
where Ra, R.sup.b and Rc are as defined above and LG is a leaving
group.
##STR00061## ##STR00062##
[0334] Compounds of Formula I where L-E is selected from
##STR00063##
and X--Y is selected from --C(O)NR.sup.2--Y are prepared in a
similar manner by substituting
##STR00064##
with
##STR00065##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0335] Compounds of Formula I where L-E is selected from
##STR00066##
and X--Y is selected from --NR.sup.2C(O)--Y are prepared as
described below:
[0336] Intermediate D3 is obtained in a 2 steps sequence by first
reacting commercially available Intermediate D1 with an acid of
formula YCO.sub.2H under standard coupling conditions or with an
activated acid of formula YC(O)LG, where Y is as defined above and
LG is a leaving group, to provide Intermediate D2; Intermediate D2
is then treated with R.sup.2LG, where R.sup.2 is as defined above
and LG is a leaving group, in a presence of a base to provide
Intermediate D3. Intermediate D4 is obtained by reacting
Intermediate D2 or D3 with an amine of formula A2 where ring
B.sub.1, n and R.sup.1 are as defined above and PG.sup.1 is a
suitable protecting group. Reduction of the nitro group provides
Intermediate C5 which is then cyclized to the corresponding
aminobenzimidazole Intermediate D6. Coupling of Intermediate D6
with an acid of formula RCO.sub.2H under standard coupling
conditions or with an activated acid of formula RC(O)LG where R is
as defined above and LG is a leaving group provides Intermediate
D7. Removal of PG.sup.1 protecting group provides Intermediate D8.
Compounds of Formula I are then obtained from Intermediate D8 by
coupling Intermediate D8 with an acid of formula
##STR00067##
under standard coupling conditions or with an activated acid of
formula
##STR00068##
where R.sup.a, R.sup.b and Rc are as defined above and LG is a
leaving group.
##STR00069## ##STR00070##
[0337] Compounds of Formula I where L is selected from
##STR00071##
and X--Y is selected from --NR.sup.2C(O)--Y are prepared in a
similar manner by substituting
##STR00072##
with
##STR00073##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0338] In an alternative method compounds of Formula I wherein L-E
is selected from
##STR00074##
and X--Y is selected from --NR.sup.2C(O)--Y are prepared as
described below:
[0339] Protection of commercially available Intermediate E1
provides Intermediate E2 where R.sup.2 is as defined above and
PG.sup.4 is a suitable protecting group. Intermediate E3 is
obtained by reacting Intermediates E2 with an amine of formula A2
where ring B.sub.1, n and R.sup.1 are as defined above and PG.sup.1
is a suitable protecting group. Reduction of the nitro group
provides Intermediate E4 which is then cyclized to the
corresponding aminobenzimidazole Intermediate E5. Coupling of
Intermediate E5 with an acid of formula RCO.sub.2H under standard
coupling conditions or with an activated acid of formula RC(O)LG
where R is as defined above and LG is a leaving group provides
Intermediate E6. Removal of PG.sup.1 protecting group provides
Intermediate E7. Intermediates E8 is obtained by coupling
Intermediate E7 with an acid of formula
##STR00075##
under standard coupling conditions or with an activated acid of
formula
##STR00076##
where R.sup.a, R.sup.b and Rc are as defined above and LG is a
leaving group. Removal of PG.sup.4 protecting group provides
Intermediate E9. Coupling of Intermediate D9 with an acid of
formula YCO.sub.2H under standard coupling conditions or with an
activated acid of formula YC(O)LG where Y is as defined above and
LG is a leaving group provides compounds of Formula I.
##STR00077## ##STR00078##
[0340] Compounds of Formula I where L is selected from
##STR00079##
and X--Y is selected from --NR.sup.2C(O)--Y are prepared in a
similar manner by substituting
##STR00080##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0341] Compounds of Formula I where L-E is selected from
##STR00081##
and X--Y is selected from --NR.sup.2SO.sub.2--Y are prepared as
described below:
[0342] Intermediate F3 is obtained in a 2 steps sequence by first
reacting commercially available Intermediate F1 with an
Intermediate of formula Y--SO.sub.2-LG where Y is as defined and LG
is a leaving group, followed by reacting Intermediate F2 with an
Intermediate of formula R.sup.2LG, where R.sup.2 is as defined
above and LG is a leaving group, in a presence of a base. A
Buchwald cross coupling reaction of Intermediates F2 or F3 with an
amine of formula A2 provides Intermediate F4 where ring B.sub.1, n
and R.sup.1 are as defined above and PG.sup.1 is a suitable
protecting group. Reduction of the nitro group provides
Intermediate F5 which is then cyclized to the corresponding
aminobenzimidazole Intermediate F6. Coupling of Intermediate F6
with an acid of formula RCO.sub.2H under standard coupling
conditions or with an activated acid of formula RC(O)LG where R is
as defined above and LG is a leaving group provides Intermediate
F7. Removal of PG.sup.1 protecting group provides Intermediate F8.
Compounds of Formula I are then obtained by coupling Intermediate
F8 with an acid of formula
##STR00082##
under standard coupling conditions or with an activated acid of
formula
##STR00083##
where R.sup.a, R.sup.b and Rc are as defined above and LG is a
leaving group.
##STR00084## ##STR00085##
[0343] Compounds of Formula I where L-E is selected from
##STR00086##
and X--Y is selected from --NR.sup.2C(O)--Y are prepared in a
similar manner by substituting
##STR00087##
with
##STR00088##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0344] Compounds of Formula I where L-E is selected from
##STR00089##
and X--Y is selected from --O--CH.sub.2--Y are prepared as
described below:
[0345] Intermediate G2 is obtained by reacting commercially
available Intermediate G1 with an Intermediate of formula
Y--CH.sub.2-LG, where Y is as described above and LG is a leaving
group, in a presence of a base. Alternatively, Intermediate G2 is
obtained by reacting Intermediate F1 with an Intermediate of
formula Y--CH.sub.2--OH under Mitsunobu conditions. A Buchwald
cross coupling reaction of Intermediate G2 with an amine of formula
A2 provides Intermediate G3 where ring B.sub.1, n and R.sup.1 are
as defined above and PG.sup.1 is a suitable protecting group.
Reduction of the nitro group provides Intermediate G4 which is then
cyclized to the corresponding aminobenzimidazole Intermediate G5.
Coupling of Intermediate G5 with an acid of formula RCO.sub.2H
under standard coupling conditions or with an activated acid of
formula RC(O)LG where R is as defined above and LG is a leaving
group provides Intermediate G6. Removal of PG.sup.1 protecting
group provides Intermediate G7. Compounds of Formula I are obtained
by coupling Intermediate G7 with an acid of formula
##STR00090##
under standard coupling conditions or with an activated acid of
formula
##STR00091##
where R.sup.a, R.sup.b and R.sup.c are as defined above and LG is a
leaving group.
##STR00092## ##STR00093##
[0346] Compounds of Formula I where L-E is selected from
##STR00094##
and X--Y is selected from --O--CH.sub.2--Y are prepared in a
similar manner by substituting
##STR00095##
with
##STR00096##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0347] Compounds of Formula I wherein L-E is selected from
##STR00097##
and X--Y is selected from --CH.sub.2--NR.sup.3--Y are prepared as
described below:
[0348] Compounds of Formula I where R.sup.3 is selected from
--C(O)R.sup.4 as described above are obtained by reacting a
compound of Formula I where X--Y is selected from --CH.sub.2NH--Y
with an acid of formula R.sup.4CO.sub.2H under standard coupling
conditions or with an activated acid of formula R.sup.4C(O)LG where
R.sup.4 is as defined above and LG is a leaving group. Compounds of
Formula I where R.sup.3 is selected from --SO.sub.2R.sup.4 as
described above are obtained by reacting a compound of Formula I
where X--Y is selected from --CH.sub.2NH--Y with an Intermediate of
formula R.sup.4SO.sub.2LG where R.sup.4 is as defined above and LG
is a leaving group. Compounds of Formula I where R.sup.3 is
selected from --C(O)OR.sup.4 as described above are obtained by
reacting a compound of Formula I where X--Y is selected from
--CH.sub.2NH--Y with an Intermediate of formula R.sup.4C(O)OLG
where R.sup.4 is as defined above and LG is a leaving group.
##STR00098##
[0349] Compounds of Formula I where L is selected from
##STR00099##
and X--Y is selected from --CH.sub.2--NR.sup.3--Y are prepared in a
similar manner by substituting
##STR00100##
with
##STR00101##
where ring B.sub.2, n and PG.sup.1 are as defined above.
[0350] The following synthetic methods are intended to be
representative of the chemistry used to prepare compound of Formula
I of the present invention and are not intended to be limiting.
Synthesis of Intermediate 1-h
##STR00102## ##STR00103##
[0351] Step 1: Intermediate 1-c
[0352] To a solution of 4-fluoro-3-nitrobenzaldehyde 1-a (812 mg,
4.8 mmol) and DIPEA (2.5 ml, 14.4 mmol) in acetonitrile was added
dropwise a solution of tert-butyl 3-aminophenylcarbamate 1-b (1.0
g, 4.8 mmol) in acetonitrile. After the addition was completed, the
reaction was stirred overnight at room temperature. Volatiles were
removed under reduced pressure. A saturated aqueous solution of
ammonium chloride and dichloromethane were added to the residue,
the organic layer was separated, and the aqueous phase was
extracted twice with dichloromethane. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 1-c as a yellow solid.
Step 2: Intermediate 1-e
[0353] To a solution of Intermediate 1-c (1.7 g, 4.7 mmol) and
(S)-3,3-dimethylbutan-2-amine 1-e (481 mg, 4.7 mmol) in
1,2-dichloroethane were sequentially added acetic acid (136 .mu.l,
2.4 mmol) and sodium triacetoxyborohydride (1.5 g, 7.1 mmol) and
the reaction was stirred at room temperature overnight. A saturated
aqueous solution of NaHCO.sub.3 and dichloromethane were then
added, the organic layer was separated, and the aqueous phase was
extracted twice with dichloromethane. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure to provide Intermediate 1-e as
a yellow solid.
Step 3: Intermediate 1-f
[0354] To a solution of Intermediate 1-e (2.0 g, 4.5 mmol) in
dichloromethane were sequentially added sodium bicarbonate (380 mg)
in water (9 ml) and benzyl chloroformate (968 .mu.l, 6.8 mmol) and
the reaction was then stirred for 2 hours at room temperature. A
saturated aqueous solution of ammonium chloride and diethyl ether
were added to the residue, the organic layer was separated, and the
aqueous phase was extracted twice with diethyl ether. The combined
organic extracts were washed with brine, dried over MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Intermediate 1-f as a beige
oil.
Step 4: Intermediate 1-g
[0355] To a solution of Intermediate 1-f (1.5 g, 2.6 mmol) in MeOH
(9.7 ml) was added a saturated aqueous solution of ammonium
chloride (3.2 ml) and zinc dust (850 mg, 13.0 mmol) portionwise.
The reaction was then stirred at 50.degree. C. until completion,
then cooled to room temperature and filtered over celite. The
filtrate was concentrated under reduced pressure. A saturated
aqueous solution of NaHCO.sub.3 and ethyl acetate were added to the
residue, the organic layer was separated, washed with brine, dried
over MgSO.sub.4, filtered and concentrated under reduced pressure
to provide Intermediate 1-g as a purple solid.
Step 5: Intermediate 1-h
[0356] To a solution of Intermediate 1-g (1.3 g, 2.4 mmol) in EtOH
(24.0 ml) was added cyanogen bromide (302 mg, 2.8 mmol) and the
reaction was stirred for 4 hours at room temperature. A saturated
aqueous solution of ammonium chloride and ethyl acetate were then
added, the organic layer was separated, and the aqueous phase was
extracted twice with ethyl acetate. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 1-h as a purple solid.
Synthesis of Intermediates 2-c
##STR00104##
[0357] Step 1: Intermediate 2-b
[0358] To a solution of Intermediate
5-(difluoromethyl)thiophene-2-carboxylic acid 2-a (150 mg, 0.8
mmol) in DMF (3.5 ml) was added HATU (346 mg, 0.9 mmol) and after
stirring for 30 minutes a solution of Intermediate 1-h (400 mg, 0.7
mmol) and DIPEA (367 .mu.l, 2.1 mmol) in DMF was added dropwise.
The reaction was then stirred at room temperature for 4 hours. A
saturated aqueous solution of ammonium chloride and ethyl acetate
were then added, the organic layer was separated, washed with a
saturated aqueous solution of NaHCO.sub.3 and brine, dried over
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate 2-b
as a purple solid.
Step 2: Intermediate 2-c
[0359] To a solution of Intermediate 2-b (300 mg, 0.4 mmol) in
dichloromethane (5 ml) was added TFA (2.5 ml, 32.7 mmol) at
0.degree. C. and the solution was stirred at room temperature until
completion. Volatiles were removed under reduced pressure to
provide Intermediate 2-c.TFA as a white solid.
Synthesis of Compound 2
##STR00105##
[0360] Step 1: Intermediate 3-a
[0361] To a solution of Intermediate 2-c.TFA (300 mg, 0.4 mmol) in
THF (2 mL) cooled to -78.degree. C. were sequentially added DIPEA
(348 .mu.l, 2.0 mmol) and acryloyl chloride (49 .mu.L, 0.6 mmol)
and the solution was stirred at -78.degree. C. until completion. A
saturated aqueous solution of ammonium chloride and ethyl acetate
were then added, the organic layer was separated, and the aqueous
phase was extracted twice with ethyl acetate. The combined organic
extracts were washed with brine, dried over MgSO.sub.4, filtered
and concentrated under reduced pressure to provide Intermediate 3-a
as a white foam.
Step 2: Compound 2
[0362] To a solution of Intermediate 3-a (250 mg, 0.3 mmol) in DCM
(1 ml) was added a solution of 33% HBr in AcOH (990 .mu.l, 5.4
mmol) at 0.degree. C. and the solution was then stirred at room
temperature until completion. Diethyl ether was added and the
precipitate was filtered off and washed twice with diethyl ether.
The solid was dissolved in THF and Cs.sub.2CO.sub.3 (500 mg) was
added. The mixture was refluxed for 1 hour, then cooled to room
temperature, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Compound 2 as a
white solid.
[0363] Compounds 7, 8, 9, 10, 11, 12, 13, 15, 16, 17, 19, 20, 24,
25, 26 and 82 were prepared in a similar manner to Compound 2 by
replacing 5-(difluoromethyl)thiophene-2-carboxylic acid with
3-fluorobenzoic acid, 3-methoxybenzoic acid, 3-cyanobenzoic acid,
4-chlorobenzoic acid, 4-cyanobenzoic acid, thiazole-2-carboxylic
acid, thiophene-2-carboxylic acid, 3-chlorobenzoic acid,
isonicotinic acid, thiazole-5-carboxylic acid, nicotinic acid,
4-fluorobenzoic acid, 4-methoxy benzoic acid,
5-(oxazol-5-yl)thiophene-2-carboxylic acid, 3-(benzyloxy)benzoic
acid and 2-isopropylthiazole-5-carboxylic acid respectively.
[0364] Compounds 4, 5, 33 and 34 were prepared in a similar manner
to Compound 2 by replacing tert-butyl 3-aminophenylcarbamate 1-b
with tert-butyl 4-aminophenylcarbamate, tert-butyl
3-aminophenyl(methyl)carbamate, tert-butyl
3-amino-4-fluorophenylcarbamate and tert-butyl
5-amino-2-fluorophenylcarbamate respectively,
Synthesis of Intermediate 4-f
##STR00106## ##STR00107##
[0365] Step 1: Intermediate 4-b
[0366] To a solution of 4-fluoro-3-nitrobenzaldehyde 1-a (1.5 g,
9.3 mmol) and DIPEA (4.9 ml, 28.0 mmol) in acetonitrile was added
dropwise a solution of Intermediate 4-a (2.0 g, 9.3 mmol) in
acetonitrile. After the addition was completed, the reaction was
stirred overnight at room temperature. Volatiles were removed under
reduced pressure. A saturated aqueous solution of ammonium chloride
and dichloromethane were added to the residue, the organic layer
was separated, and the aqueous phase was extracted twice with
dichloromethane. The combined organic extracts were washed with
brine, dried over MgSO.sub.4, filtered and concentrated under
reduced pressure. Purification by silica gel chromatography
provided Intermediate 4-b as a yellow solid.
Step 2: Intermediate 4-c
[0367] To a solution of Intermediate 4-b (2.3 g, 6.3 mmol) and
(S)-3,3-dimethylbutan-2-amine 1-d (640 mg, 6.3 mmol) in
1,2-dichloroethane were sequentially added acetic acid (181 .mu.l,
2.4 mmol) and sodium triacetoxyborohydride (2.0 g, 9.5 mmol) and
the reaction was stirred at room temperature overnight. A saturated
aqueous solution of NaHCO.sub.3 and dichloromethane were then
added, the organic layer was separated, and the aqueous phase was
extracted twice with dichloromethane. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure to provide Intermediate 4-c as
an orange solid.
Step 3: Intermediate 4-d
[0368] To a solution of Intermediate 4-c (2.2 g, 5.0 mmol) in
dichloromethane were sequentially added sodium bicarbonate (420 mg)
in water (10 ml) and benzyl chloroformate (1.0 ml, 7.5 mmol) and
the reaction was then stirred overnight at room temperature.
Volatiles were removed under reduced pressure. A saturated aqueous
solution of ammonium chloride and ethyl acetate were added to the
residue, the organic layer was separated, and the aqueous phase was
extracted twice with ethyl acetate. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 4-d as a beige oil.
Step 4: Intermediate 4-e
[0369] To a solution of Intermediate 4-d (1.7 g, 2.9 mmol) in MeOH
(9.7 ml) was added a saturated aqueous solution of ammonium
chloride (4.8 ml) and zinc dust (954 mg, 13.0 mmol) portion wise.
The reaction was then stirred at 50.degree. C. until completion,
then cooled to room temperature and filtered over celite. The
filtrate was concentrated under reduced pressure. A saturated
aqueous solution of NaHCO.sub.3 and ethyl acetate were added to the
residue, the organic layer was separated, washed with brine, dried
over MgSO.sub.4, filtered and concentrated under reduced pressure.
Diethyl ether was added to the residue; a precipitate formed and
was collected by filtration to provide Intermediate 4-e as a purple
solid.
Step 5: Intermediate 4-f
[0370] To a solution of Intermediate 4-e (1.5 g, 2.7 mmol) in EtOH
(24 ml) was added cyanogen bromide (345 mg, 3.2 mmol) and the
reaction was stirred for 4 hours at room temperature. A saturated
aqueous solution of ammonium chloride and ethyl acetate were then
added, the organic layer was separated, and the aqueous phase was
extracted twice with ethyl acetate. The combined organic extracts
were washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure. Diethyl ether was added to the
residue; a precipitate formed and was collected by filtration to
provide Intermediate 4-f as a purple solid.
Synthesis of Intermediate 5-b
##STR00108##
[0371] Step 1: Intermediate 5-a
[0372] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (351 mg, 0.6 mmol) in DMF (3.0 ml) cooled to 0.degree. C.
was added HATU (301 mg, 0.8 mmol) and after stirring for 30 minutes
a solution of Intermediate 4-f (130 mg, 0.7 mmol) and DIPEA (319
.mu.l, 2.1 mmol) in DMF was added dropwise. The reaction was then
stirred at room temperature for 4 hours. A saturated aqueous
solution of ammonium chloride and ethyl acetate were then added,
the organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over MgSO.sub.4, filtered
and concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 5-a as a purple solid.
Step 2: Intermediate 5-b
[0373] To a solution of Intermediate 5-a (300 mg, 0.4 mmol) in
dichloromethane (5 ml) was added TFA (2.5 ml, 32.7 mmol) at
0.degree. C. and the solution was stirred at room temperature until
completion. Volatiles were removed under reduced pressure to
provide Intermediate 5-b.TFA as an off-white solid.
Synthesis of Compound 3
##STR00109##
[0374] Step 1: Intermediate 6-a
[0375] To a solution of Intermediate 5-b.TFA (310 mg, 0.4 mmol) in
THF (2 mL) cooled to -78.degree. C. were sequentially added DIPEA
(700 .mu.l, 4.1 mmol) and 3-bromopropanoyl chloride (62 .mu.L, 0.6
mmol) and the solution was stirred at -78.degree. C. until
completion. A saturated aqueous solution of ammonium chloride and
ethyl acetate were then added, the organic layer was separated, and
the aqueous phase was extracted twice with ethyl acetate. The
combined organic extracts were washed with brine, dried over
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 6-a as a white foam.
Step 2: Intermediate 6-b
[0376] To a solution of Intermediate 6-a (320 mg, 0.4 mmol) in
dichloromethane (1.5 ml) was added a solution of 33% HBr in AcOH
(1.1 ml, 6.2 mmol) at 0.degree. C. and the solution was then
stirred at room temperature until completion. Diethyl ether was
added; a precipitate formed and was collected by filtration, washed
twice with diethyl ether and dried under vacuum to provide
Intermediate 6-b as a white solid.
Step 3: Compound 3
[0377] To a solution of Intermediate 6-b (260 mg, 0.4 mmol) in THF
was added DIPEA (1.0 ml, 5.7 mmol) and the reaction was stirred at
room temperature overnight. Volatiles were removed under reduced
pressure. Purification by silica gel chromatography provided
Compound 3 as a white solid.
[0378] Compounds 54, 55, 67 and 71 were prepared in a similar
manner to Compound 3 by replacing
5-(difluoromethyl)thiophene-2-carboxylic acid with 4-cyanobenzoic
acid, nicotinic acid, isothiazole-5-carboxylic acid and
5-(oxazol-5-yl)thiophene-2-carboxylic acid respectively.
[0379] Compounds 1, 6, 18, 58, 62, 68 and 81 were prepared in a
similar manner to Compound 3 by replacing
##STR00110##
respectively for the synthesis Intermediate 4-f.
Synthesis of Intermediate 7-d
##STR00111##
[0380] Step 1: Intermediate 7-a
[0381] To a solution of Intermediate 1-c (5.0 g, 14.0 mmol) in
ethanol (200 ml) was added portion wise sodium borohydride (794 mg,
21.0 mmol) and the reaction was stirred at room temperature for 1
hour. A saturated aqueous solution of NaHCO.sub.3 was slowly added
and after stirring for 15 minutes volatiles were removed under
reduced pressure. Ethyl acetate was added, the organic layer was
separated, washed with a saturated aqueous solution of NaHCO.sub.3
and brine, dried over MgSO.sub.4, filtered and concentrated under
reduced pressure to provide Intermediate 7-a as a beige foam.
Step 2: Intermediate 7-b
[0382] To a solution of Intermediate 7-a (5.0 g, 13.9 mmol) in
dichloromethane (143 ml) cooled to 0.degree. C. were sequentially
added imidazole (1.9 g, 29.2 mmol) and
tert-butylchlorodimethylsilane (2.2 g, 14.6 mmol) portion wise. The
reaction was then warmed to room temperature and stirred overnight.
A saturated aqueous solution of ammonium chloride and ethyl acetate
were added, the organic layer was separated, washed with a
saturated aqueous solution of ammonium chloride and brine, dried
over MgSO.sub.4, filtered and concentrated under reduced pressure
to provide Intermediate 7-b as a beige oil.
Step 3: Intermediate 7-c
[0383] To a solution of Intermediate 7-b (5.0 g, 10.6 mmol) in
methanol and stirred under nitrogen was added 10% Pd/C (225 mg, 1.1
mmol). The reaction mixture was purged with H.sub.2 and stirred for
24 hours under H.sub.2. The reaction was then filtered through
celite and the filtrate was concentrated under reduced pressure to
provide Intermediate 7-c as a beige solid.
Step 4: Intermediate 7-d
[0384] To a solution of Intermediate 7-c (4.5 g, 10.1 mmol) in EtOH
(51 ml) was added cyanogen bromide (1.3 g, 12.2 mmol) and the
reaction was stirred for 2 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over MgSO.sub.4,
filtered and concentrated under reduced pressure to provide
Intermediate 7-d as a beige foam.
Synthesis of Compound 85
##STR00112##
[0385] Step 1: Intermediate 8-a
[0386] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (1.2 g, 7.1 mmol) in DMF (32.0 ml) cooled to 0.degree. C.
was added HATU (3.2 g, 8.3 mmol) and after stirring for 30 minutes
a solution of Intermediate 7-d (3.0 mg, 6.4 mmol) and DIPEA (3.3
ml, 19.2 mmol) in DMF was added dropwise. The reaction was then
stirred at room temperature overnight. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added, the organic
layer was separated, washed with a saturated aqueous solution of
NaHCO.sub.3 and brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 8-a as a purple solid.
Step 2: Intermediate 8-b
[0387] To a solution of Intermediate 8-a (2.5 g, 3.9 mmol) in MeOH
(5 ml) was added 4N HCl in 1,4-dioxane (50.0 ml, 1646.0 mmol) and
the solution was stirred at room temperature overnight. Volatiles
were removed under reduced pressure and diethyl ether was added to
the residue. A precipitate formed and was collected by filtration,
dried under vacuum to provide Intermediate 8-b.HCl as a purple
solid.
Step 3: Intermediate 8-c
[0388] To a solution of Intermediate 8-b.HCl (77 mg, 0.2 mmol) in
tetrahydrofuran (1.8 ml) cooled to -78.degree. C. were sequentially
added DIPEA (323 .mu.l, 1.8 mmol) and acryloyl chloride (15 .mu.l,
0.2 mmol) and the reaction was stirred at -78.degree. C. for 2
hours. Water (20 mL) and ethyl acetate (20 mL) were added, the
organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure to provide
Intermediate 8-c as a beige solid.
Step 4: Compound 85
[0389] To a solution of Intermediate 8-c (1.8 g, 3.8 mmol) in THF
(15 ml) and DMSO (10.0 ml) cooled to 0.degree. C. were sequentially
added DIPEA (2.7 ml, 15.4 mmol) and a solution of SO.sub.3 pyridine
complex (1.8 g, 11.5 mmol) in DMSO (5 mL). The mixture was stirred
at 0.degree. C. until completion. Volatiles were removed under
reduced pressure, water was added, a precipitate formed and was
collected by filtration, washed with water and dried under vacuum
to provide Intermediate 8-d as a beige solid.
Synthesis of Compound 14
##STR00113##
[0391] To a solution of Compound 85 (40 mg, 0.09 mmol) and
cyclohexylamine (10.0 .mu.l, 0.09 mmol) in dichloroethane (700
.mu.l) and THF (70 .mu.l) were sequentially added acetic acid (2
.mu.l, 0.04 mmol) and sodium triacetoxyborohydride (27 mg, 0.13
mmol) and the reaction was stirred at room temperature overnight.
Volatiles were removed under reduced pressure. Purification by
silica gel chromatography provided Compound 14 as a white
solid.
[0392] Compounds 21, 22, 23, 29, 30, 31, 35, 39, 40, 46, 47, 59 and
66 were prepared in a similar manner to Compound 14 by replacing
cyclohexylamine with (S)-butan-2-amine,
(R)-2-amino-3,3-dimethylbutan-1-ol, 2,2-dimethylpropan-1-amine,
3-amino-2,2-dimethylpropan-1-ol, (R)-3,3-dimethylbutan-2-amine,
trans 4-aminocyclohexanol, cis 4-aminocyclohexanol,
3-aminopropan-1-ol, ethanamine, 2-(2-methoxyethoxy)ethanamine,
(S)-2-amino-3,3-dimethylbutan-1-ol, 2-(piperazin-1-yl)ethanol and
N-(3-(2-(3-aminopropoxy)ethoxy) propyl)acetamide respectively.
Synthesis of Compound 32
##STR00114##
[0394] To a solution of Compound 85 (40 mg, 0.09 mmol) and
pyrrolidine (6.1 mg, 0.09 mmol) in THF (2.0 ml) was added acetic
acid (2 .mu.l, 0.04 mmol) and sodium triacetoxyborohydride (27 mg,
0.13 mmol) and the reaction was stirred at room temperature
overnight. Volatiles were removed under reduced pressure.
Purification by silica gel chromatography provided Compound 32 as a
white solid.
[0395] Compounds 44, 45, 50 and 61 were prepared in a similar
manner to Compound 32 by replacing pyrrolidine with
(R)-pyrrolidin-2-ylmethanol, (S)-pyrrolidin-2-ylmethanol,
morpholine and (2S,6R)-2,6-dimethylmorpholine respectively.
Synthesis of Intermediate 10-d
##STR00115##
[0396] Step 1: Intermediate 10-b
[0397] To a solution of trans 4-aminocyclohexanol 10-a (1 g, 8.7
mmol) in acetonitrile (43.4 ml) were sequentially added potassium
carbonate (6.0 g, 43.4 mmol) and benzyl bromide (2.06 ml, 17.4
mmol) dropwise. The reaction was stirred at room temperature
overnight and then filtered. Volatiles were removed under reduced
pressure to provide Intermediate 10-b as a beige oil.
Step 2: Intermediate 10-c
[0398] To a solution of Intermediate 10-b (2.5 g, 8.5 mmol) and
1-bromo-2-methoxyethane (3.5 g, 25.4 mmol) in DMPU (8.5 ml) was
slowly added NaH (60% dispersion in mineral oil, 846 mg, 21.2
mmol), and the reaction was then stirred at room temperature for 18
hours. Water and ethyl acetate were added; the organic layer was
separated, washed with a saturated aqueous solution of NaHCO.sub.3
and brine, dried over anhydrous MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 10-c as beige oil.
Step 3: Intermediate 10-d
[0399] To a solution of Intermediate 10-c (2.5 g, 7.1 mmol) in
methanol and stirred under nitrogen was added 10% Pd/C (200 mg, 0.9
mmol). The reaction mixture was purged with H.sub.2 and stirred for
1 day under 60 psi of H.sub.2. The reaction was then filtered
through celite and the filtrate was concentrated under reduced
pressure to provide Intermediate 10-d as a white foam.
Synthesis of Compound 51
##STR00116##
[0401] To a solution of Compound 85 (50 mg, 0.11 mmol) and
Intermediate 10-d (28 mg, 0.16 mmol) in THF (1 ml) and acetonitrile
(1 ml) was added sodium triacetoxyborohydride (34 mg, 0.16 mmol)
and the reaction was stirred at room temperature overnight.
Volatiles were removed under reduced pressure. Purification by
silica gel chromatography provided Compound 51 as a white
solid.
[0402] Compounds 52 and 60 were prepared in a similar manner to
Compound 51 by replacing trans 4-aminocyclohexanol with
(R)-2-amino-3,3-dimethylbutan-1-ol and cis 4-aminocyclohexanol
respectively for the synthesis of Intermediate 10-d.
Synthesis of Compound 41
##STR00117## ##STR00118##
[0403] Step 1: Intermediate 12-a
[0404] To a solution of pyrimidine-5-carboxylic acid (53 mg, 0.4
mmol) in DMF cooled to 0.degree. C. was added HATU (211 mg, 0.5
mmol) and after stirring for 30 minutes a solution of Intermediate
7-d (200 mg, 0.4 mmol) and DIPEA (224 .mu.l, 1.3 mmol) in DMF was
added dropwise. The reaction was then stirred at room temperature
for 3 days. A saturated aqueous solution of ammonium chloride and
ethyl acetate were then added, the organic layer was separated,
washed with a saturated aqueous solution of NaHCO.sub.3 and brine,
dried over anhydrous MgSO.sub.4, filtered and concentrated under
reduced pressure. Purification by silica gel chromatography
provided Intermediate 12-a as a purple solid.
Step 2: Intermediate 12-b
[0405] To a solution of Intermediate 12-a (54 mg, 0.09 mmol) in
MeOH (2 ml) was added 4N HCl in dioxane (5 ml, 30 mmol) and the
solution was stirred at room temperature overnight. Volatiles were
removed under reduced pressure to provide Intermediate 12-b as a
beige solid.
Step 3: Intermediate 12-c
[0406] To a solution of Intermediate 12-b.HCl (34 mg, 0.09 mmol) in
THF (2 mL) and NMP (1 ml) cooled to -78.degree. C. were
sequentially added DIPEA (163 .mu.l, 0.94 mmol) and acryloyl
chloride (8 .mu.L, 0.09 mmol) and the solution was stirred at
-78.degree. C. until completion. Volatiles were removed under
reduced pressure, water was added to the residue, a precipitate
formed and was collected by filtration, washed with water and dried
under vacuum to provide Intermediate 12-c as a beige solid.
Step 4: Compound 86
[0407] To a solution of Intermediate 12-c (40 mg, 0.09 mmol) in THF
(1.5 ml) and DMSO (1.5 ml) cooled to 0.degree. C. were sequentially
added DIPEA (67 .mu.l, 0.38 mmol) and a solution of SO.sub.3
pyridine complex (46 mg, 0.29 mmol) in DMSO (1 mL). The mixture was
then stirred at room temperature overnight. Volatiles were removed
under reduced pressure, water was added, a precipitate formed and
was collected by filtration, washed with water and dried under
vacuum to provide Compound 86 as a beige solid.
Step 5: Compound 41
[0408] To a solution of Compound 86 (40 mg, 0.09 mmol) and
(S)-3,3-dimethylbutan-2-amine 1-d (18 .mu.l, 0.14 mmol) in MeOH (2
ml) and dichloromethane (500 .mu.l) were sequentially added acetic
acid (2.8 .mu.l, 0.048 mmol) and sodium triacetoxyborohydride (31
mg, 0.14 mmol) and the reaction was stirred at room temperature
overnight. Volatiles were removed under reduced pressure.
Purification by silica gel chromatography provided Compound 41 as a
white solid.
[0409] Compounds 27, 28, 37, 38, 42, 43 and 49 were prepared in a
similar manner to Compound 41 by replacing pyrimidine-5-carboxylic
acid with picolinic acid, 1-methyl-1H-pyrazole-5-carboxylic acid,
4-(benzyloxy)benzoic acid, isoxazole-5-carboxylic acid,
oxazole-5-carboxylic acid, isothiazole-5-carboxylic acid and
1-methyl-1H-pyrazole-4-carboxylic acid respectively.
Synthesis of Compound 87
##STR00119##
[0410] Step 1: Intermediate 13-a
[0411] To a solution of isoxazole-5-carboxylic acid (330 mg, 2.9
mmol) in DMF (24 ml) cooled to 0.degree. C. was added HATU (1.2 g,
3.2 mmol) and after stirring for 30 minutes a solution of
Intermediate 7-d (1.1 g, 2.4 mmol) and DIPEA (1.3 ml, 7.3 mmol) in
DMF (3 ml) was added dropwise. The reaction was then stirred at
room temperature for 1 day. A saturated aqueous solution of
ammonium chloride and ethyl acetate were then added, the organic
layer was separated, washed with a saturated aqueous solution of
NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4, filtered
and concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 13-a as a beige solid.
Step 2: Intermediate 13-b
[0412] To a solution of Intermediate 13-a (1.1 g, 2.0 mmol) in MeOH
(1 ml) was added 4N HCl in dioxane (10.0 ml, 40.0 mmol) and the
solution was stirred at room temperature overnight. Volatiles were
removed under reduced pressure to provide Intermediate 13-b.HCl as
a beige solid.
Step 3: Intermediate 13-c
[0413] To a solution of Intermediate 13-b.HCl (700 mg, 2.0 mmol) in
THF (20.0 mL) and NMP (1.5 ml) cooled to -78.degree. C. were
sequentially added DIPEA (3.5 ml, 20.0 mmol) and acryloyl chloride
(163 .mu.L, 2.0 mmol) and the solution was stirred at -78.degree.
C. for 30 minutes. Volatiles were removed under reduced pressure,
water was added to the residue, a precipitate formed and was
collected by filtration, washed with water and dried under vacuum
to provide Intermediate 13-c as a beige solid.
Step 4: Compound 87
[0414] To a solution of Intermediate 13-c (620 mg, 1.5 mmol) in THF
(3.1 ml) and DMSO (1.1 ml) cooled to 0.degree. C. were sequentially
added DIPEA (1.1 ml, 6.1 mmol) and a solution of SO.sub.3 pyridine
complex (734 mg, 4.6 mmol) in DMSO (10.0 mL). The mixture was then
stirred at 0.degree. C. for 2 hours. Volatiles were removed under
reduced pressure, water was added, a precipitate formed and was
collected by filtration, washed with water and dried under vacuum
to provide Compound 87 as a beige solid.
Synthesis of Compound 76
##STR00120##
[0416] To a solution of Compound 87 (150 mg, 0.4 mmol) and
morpholine (36 .mu.l, 0.4 mmol) in dichloroethane (2.0 ml), were
sequentially added acetic acid (11 .mu.l, 0.2 mmol) and sodium
triacetoxyborohydride (792 mg, 3.7 mmol) and the reaction was
stirred overnight at room temperature. Volatiles were removed under
reduced pressure. Purification by silica gel chromatography
provided Compound 76 as a white solid.
[0417] Compounds 74 was prepared in a similar manner to Compound 76
by replacing morpholine with trans-4-aminocyclohexanol
Synthesis of Compound 88
##STR00121## ##STR00122##
[0418] Step 1: Intermediate 15-a
[0419] To a solution of isothiazole-5-carboxylic acid (331 mg, 2.6
mmol) in DMF (21 ml) cooled to 0.degree. C. was added HATU (1.0 g,
2.8 mmol) and after stirring for 30 minutes a solution of
Intermediate 7-d (1.0 g, 2.1 mmol) and DIPEA (1.1 ml, 6.4 mmol) in
DMF (3 ml) was added dropwise. The reaction was then stirred at
room temperature for 1 day. A saturated aqueous solution of
ammonium chloride and ethyl acetate were then added, the organic
layer was separated, washed with a saturated aqueous solution of
NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4, filtered
and concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 15-a as a beige solid.
Step 2: Intermediate 15-b
[0420] To a solution of Intermediate 15-a (950 mg, 1.6 mmol) in
MeOH (1 ml) was added 4N HCl in dioxane (10.0 ml, 40.0 mmol) and
the solution was stirred at room temperature overnight. Volatiles
were removed under reduced pressure, diethyl ether and hexanes were
added to the residue, a precipitate formed and was collected by
filtration, dried under vacuum to provide Intermediate 15-b.HCl as
a beige solid.
Step 3: Intermediate 15-c
[0421] To a solution of Intermediate 15-b. HCl (600 mg, 1.6 mmol)
in THF (26.0 mL) and NMP (1.5 ml) cooled to -78.degree. C. were
sequentially added DIPEA (2.9 ml, 16.4 mmol) and acryloyl chloride
(133 .mu.L, 1.6 mmol) and the solution was stirred at -78.degree.
C. for 30 minutes. Volatiles were removed under reduced pressure,
water was added to the residue, a precipitate formed and was
collected by filtration, washed with water and dried under vacuum
to provide Intermediate 15-c as a beige solid.
Step 4: Compound 88
[0422] To a solution of Intermediate 15-c (500 mg, 1.2 mmol) in THF
(5.6 ml) and DMSO (2.0 ml) cooled to 0.degree. C. were sequentially
added DIPEA (2.0 ml, 11.2 mmol) and a solution of SO.sub.3 pyridine
complex (1.4 g, 8.4 mmol) in DMSO (1.0 mL). The mixture was then
stirred at 0.degree. C. for 1 hour. Volatiles were removed under
reduced pressure, water was added, a precipitate formed and was
collected by filtration, washed with water and dried under vacuum
to provide Compound 88 as a beige solid.
Synthesis of Compound 75
##STR00123##
[0424] To a solution of Compound 88 (150 mg, 0.4 mmol) and
trans-4-aminocyclohexanol (43 mg, 0.4 mmol) in tetrahydrofuran (2.0
ml), were sequentially added acetic acid (10 .mu.l, 0.2 mmol) and
sodium triacetoxyborohydride (114 mg, 0.5 mmol) and the reaction
was stirred overnight at room temperature. Volatiles were removed
under reduced pressure. Purification by silica gel chromatography
provided compound 75 as a white solid.
[0425] Compound 73 was prepared in a similar manner to Compound 75
by replacing trans-4-aminocyclohexanol with morpholine.
Synthesis of Intermediate 17-f
##STR00124## ##STR00125## ##STR00126##
[0426] Step 1: Intermediate 17-b
[0427] To a solution of 4-fluoro-3-nitrobenzaldehyde 1-a (722 mg,
4.3 mmol) and DIPEA (2.2 ml, 12.8 mmol) in acetonitrile was added
dropwise a solution of Intermediate 17-a (1.0 g, 4.3 mmol) in
acetonitrile. After the addition was completed, the reaction was
stirred overnight at room temperature. Volatiles were removed under
reduced pressure. A saturated aqueous solution of ammonium chloride
and ethyl acetate were added to the residue, the organic layer was
separated, washed with brine, dried over MgSO.sub.4, filtered and
concentrated under reduced pressure to provide Intermediate 17-b as
an orange foam.
Step 2: Intermediate 17-c
[0428] To a solution of Intermediate 17-b (1.6 g, 4.2 mmol) and
(S)-3,3-dimethylbutan-2-amine 1-d (625 .mu.l, 4.6 mmol) in
dichloromethane (35.0 ml), were sequentially added acetic acid (119
.mu.l, 2.1 mmol) and sodium triacetoxyborohydride (1.3 g, 6.3 mmol)
and the reaction was stirred overnight at room temperature. A
saturated aqueous solution of NaHCO.sub.3 and dichloromethane were
added, the organic layer was separated, washed with brine, dried
over anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure. Purification by silica gel chromatography provided
Intermediate 17-c as a beige solid.
Step 3: Intermediate 17-d
[0429] To a solution of Intermediate 17-c (1.9 g, 4.0 mmol) in
dichloromethane (15 ml) were sequentially added sodium bicarbonate
(341 mg) in water (20 ml) and benzyl chloroformate (868 .mu.l, 6.1
mmol) and the reaction was then stirred overnight at room
temperature. A saturated aqueous solution of ammonium chloride and
dichloromethane were added to the residue, the organic layer was
separated, washed with brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure to provide
Intermediate 17-d as an orange oil.
Step 4: Intermediate 17-e
[0430] To a solution of Intermediate 17-d (2.4 g, 4.0 mmol) in MeOH
(26.0 ml) was added a saturated aqueous solution of ammonium
chloride (15.0 ml) and zinc dust (1.3 g, 19.9 mmol) portion wise.
The reaction was then stirred at 50.degree. C. for 1 hour, then
cooled to room temperature and filtered over celite. The filtrate
was concentrated under reduced pressure. Diethyl ether and a
saturated aqueous solution of NaHCO.sub.3 were added to the
residue, the organic layer was separated, washed with brine, dried
over MgSO.sub.4, filtered and concentrated under reduced pressure
to provide Intermediate 17-e as a beige solid.
Step 5: Intermediate 17-f
[0431] To a solution of Intermediate 17-e (2.3 g, 4.0 mmol) in EtOH
(20.0 ml) was added cyanogen bromide (510 mg, 4.8 mmol) and the
reaction was stirred for 4 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over MgSO.sub.4,
filtered and concentrated under reduced pressure to provide
Intermediate 17-f as a beige solid.
Synthesis of Intermediate 18-a
##STR00127##
[0432] Step 1: Intermediate 18-a
[0433] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (137 mg, 0.8 mmol) in DMF (3.2 ml) cooled to 0.degree. C.
was added HATU (317 mg, 0.8 mmol) and after stirring for 30 minutes
a solution of Intermediate 17-f (383 mg, 0.6 mmol) and DIPEA (336
.mu.l, 1.9 mmol) in DMF (1.2 ml) was added dropwise. The reaction
was then stirred at room temperature for 1 day. A saturated aqueous
solution of ammonium chloride and ethyl acetate were then added,
the organic layer was separated, washed with a saturated aqueous
solution of ammonium chloride and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
18-a as a yellow solid.
Step 2: Intermediate 18-b
[0434] To a solution of Intermediate 18-a (177 mg, 0.2 mmol) in
MeOH (1 m11) was added 4N HCl in dioxane (4.0 ml, 16.0 mmol) at
room temperature and the solution was stirred for 1 hour. Volatiles
were removed under reduced pressure, diethyl ether was added, a
precipitate formed and was collected by filtration, dried under
vacuum to provide Intermediate 18-b.HCl as a white solid.
Synthesis of Compound 56
##STR00128## ##STR00129##
[0435] Step 1: Intermediate 19-a
[0436] To a solution of Intermediate 18-b.HCl (138 mg, 0.2 mmol) in
THF (20.0 mL) cooled to -78.degree. C. were sequentially added TEA
(277 .mu.l, 1.2 mmol) and acryloyl chloride (24 .mu.L, 0.3 mmol)
and the solution was stirred at -78.degree. C. for 30 minutes. A
saturated aqueous solution of ammonium chloride and ethyl acetate
were then added, the organic layer was separated, and the aqueous
phase was extracted twice with ethyl acetate. The combined organic
extracts were washed with brine, dried over MgSO.sub.4, filtered
and concentrated under reduced pressure to provide Intermediate
19-a as an off white foam.
Step 2: Intermediate 19-b
[0437] To a solution of Intermediate 19-a (130 mg, 0.2 mmol) in
dichloromethane (2.0 ml) was added a solution of 33% HBr in AcOH
(2.0 ml, 12.1 mmol) at 0.degree. C. and the solution was then
stirred at room temperature until completion. Diethyl ether was
added; a precipitate formed and was collected by filtration then
dried under vacuum to provide Intermediate 19-b as a white
solid.
Step 3: Compound 56
[0438] To a solution of Intermediate 19-b (120 mg, 0.2 mmol) in THF
was added cesium carbonate (475 mg, 1.5 mmol) and the reaction was
heated at 60.degree. C. overnight then cooled to room temperature
and filtered. The filtrate was concentrated under reduced pressure.
Purification by silica gel chromatography provided Compound 56 as a
white solid.
[0439] Compounds 57 was prepared in a similar manner to compound 56
by replacing tert-butyl 6-aminoindoline-1-carboxylate with
tert-butyl 6-amino-2H-benzo[b][1,4]oxazine-4(3H)-carboxylate for
the synthesis of Intermediate 17-f.
Synthesis of Intermediate 20-e
##STR00130##
[0440] Step 1: Intermediate 20-b
[0441] To a solution of 3-aminocyclobutanol HCl H.sub.2O 20-a (25.0
g, 177.0 mmol) in EtOH (88 ml) were sequentially added TEA (88.0
ml) and Boc.sub.2O (53.3 ml, 230.0 mmol) and the mixture was
stirred at room temperature overnight. Volatiles were removed under
reduced pressure. Water and ethyl acetate were added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of ammonium chloride, 10% aqueous citric acid, a
saturated aqueous solution of NaHCO.sub.3 and brine, dried over
anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 20-b as a white solid.
Step 2: Intermediate 20-c
[0442] To a solution of Intermediate 20-b (2.0 g, 10.7 mmol) in
dichloromethane (42.7 ml) were sequentially added TEA (3.0 ml, 21.4
mmol) and methanesulfonyl chloride (1.3 ml, 16.0 mmol) at 0.degree.
C. and the reaction was then stirred at room temperature for 1
hour. A saturated aqueous solution of ammonium chloride was added,
the organic layer was separated, washed with brine, dried over
anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 20-c as a white solid.
Step 3: Intermediate 20-d
[0443] To a solution of Intermediate 20-c (2.8 g, 10.7 mmol) in DMF
(42.7 ml) was added sodium azide (1.0 g, 16.0 mmol) and the
reaction was stirred at 85.degree. C. overnight and then cooled to
room temperature. A saturated aqueous solution of ammonium chloride
and diethyl ether were added, the organic layer was separated,
washed with a saturated aqueous solution of ammonium chloride and
brine, dried over anhydrous MgSO.sub.4, filtered and concentrated
under reduced pressure to provide Intermediate 20-d as white
solid.
Step 4: Intermediate 20-e
[0444] To a solution of Intermediate 20-d (2.1 g, 9.9 mmol) in
methanol (30 ml) and stirred under nitrogen was added 10% Pd/C (211
g, 0.2 mmol). The reaction mixture was purged with H.sub.2 and
stirred for 3 hours under H.sub.2. The reaction was then filtered
through celite and the filtrate was concentrated in vacuo to
provide Intermediate 20-e as a white solid.
Synthesis of Intermediate 21-f
##STR00131## ##STR00132## ##STR00133##
[0445] Step 1: Intermediate 21-b
[0446] To a solution of cyclohexanecarboxylic acid (6.9 g, 53.8
mmol) in DMF (160 ml) cooled to 0.degree. C. were sequentially
added, HBTU (22.1 g, 58.3 mmol) and after stirring for 30 minutes,
a solution of 4-fluoro-3-nitroaniline 21-a (7.0 g, 44.8 mmol) and
DiPEA (23.4 ml, 135.0 mmol) in DMF (80 ml) was added. The reaction
was then stirred for 5 days at room temperature. A saturated
aqueous solution of ammonium chloride and ethyl acetate were added,
the organic layer was separated, washed with a saturated aqueous
solution of ammonium chloride and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
21-b as a yellow solid.
Step 2: Intermediate 21-c
[0447] To a suspension of NaH (60% dispersion in mineral oil, 265
mg, 6.6 mmol) in DMF was added Intermediate 21-b (1.0 g, 3.8 mmol)
and after stirring for 15 minutes at room temperature iodomethane
(552 .mu.l, 8.9 mmol) was added. After the addition was completed,
the reaction was stirred at 60.degree. C. for 2 hours and then
cooled to room temperature. Volatiles were removed under reduced
pressure. An aqueous solution of 1N HCl and ethyl acetate were
added to the residue, the organic layer was separated, washed with
a saturated aqueous solution of NaHCO.sub.3 and brine, dried over
anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 21-c as a beige oil.
Step 3: Intermediate 21-d
[0448] A solution of Intermediate 21-c (205 mg, 0.7 mmol),
Intermediate 20-e (136 mg, 9.3 mmol) and DIPEA (382 .mu.l, 2.2
mmol) in DMSO was heated at 100.degree. C. for 1 h 30 minutes and
then cooled to room temperature. A saturated aqueous solution of
ammonium chloride and ethyl acetate were added, the organic layer
was separated, washed with a saturated aqueous solution of ammonium
chloride and brine, dried over anhydrous MgSO.sub.4, filtered and
concentrated under reduced pressure to provide Intermediate 21-d as
a yellow solid.
Step 4: Intermediate 21-e
[0449] To a solution of Intermediate 21-d (330 mg, 0.7 mmol) in
methanol and stirred under nitrogen was added 10% Pd/C (16 mg, 0.15
mmol). The reaction mixture was purged with H.sub.2 and stirred for
1 day under H.sub.2. The reaction was then filtered through celite
and the filtrate was concentrated in vacuo to provide Intermediate
21-e as a beige solid.
Step 4: Intermediate 21-f
[0450] To a solution of Intermediate 21-e (310 mg, 0.7 mmol) in
EtOH (7.4 ml) was added cyanogen bromide (95 mg, 0.9 mmol) and the
reaction was stirred for 5 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 21-f as a beige solid.
Synthesis of Intermediate 22-b
##STR00134##
[0451] Step 1: Intermediate 22-a
[0452] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (200 mg, 1.1 mmol) in DMF (3.2 ml) cooled to 0.degree. C.
was added HATU (483 mg, 1.3 mmol) and after stirring for 30 minutes
a solution of Intermediate 21-f (330 mg, 0.7 mmol) and DIPEA (522
.mu.l, 3.0 mmol) in DMF (3.2 ml) was added dropwise. The reaction
was then stirred at room temperature overnight. A saturated aqueous
solution of ammonium chloride and ethyl acetate were then added,
the organic layer was separated, washed with a saturated aqueous
solution of ammonium chloride and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
22-a as a beige solid.
Step 2: Intermediate 22-b
[0453] To a solution of Intermediate 22-a (253 mg, 0.4 mmol) in
MeOH (1 ml) was added 4N HCl in 1,4-dioxane (13.8 ml, 55.1 mmol) at
room temperature and the solution was stirred at room temperature
overnight. Volatiles were removed under reduced pressure and the
residue was dried under vacuum to provide Intermediate 22-b.HCl as
beige solid.
Synthesis of Compound 63
##STR00135##
[0455] To a solution of Intermediate 22-b.HCl (211 mg, 0.4 mmol) in
tetrahydrofuran (4.2 ml) and NMP (1 ml) cooled to -78.degree. C.
were sequentially added DIPEA (733 .mu.l, 4.2 mmol) and acryloyl
chloride (41 .mu.l, 0.5 mmol) and the reaction was stirred at
-78.degree. C. for 2 hours. Water (20 mL) and ethyl acetate (20 mL)
were added; the organic layer was separated, washed with a
saturated aqueous solution of NaHCO.sub.3 and brine, dried over
anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure. Purification by silica gel chromatography provided
Compound 63 as a white solid.
Synthesis of Intermediate 24-c
##STR00136## ##STR00137##
[0456] Step 1: Intermediate 24-a
[0457] A solution of Intermediate 21-b (200 mg, 0.7 mmol),
Intermediate 20-e (140 mg, 07 mmol) and DIPEA (392 .mu.l, 2.2 mmol)
in DMSO was heated at 100.degree. C. for 3 h 30 minutes and then
cooled to room temperature. A saturated aqueous solution of
ammonium chloride and ethyl acetate were added, the organic layer
was separated, washed with a saturated aqueous solution of ammonium
chloride and brine, dried over anhydrous MgSO.sub.4, filtered and
concentrated under reduced pressure to provide Intermediate 24-a as
a yellow solid.
Step 2: Intermediate 24-b
[0458] To a solution of Intermediate 24-a (270 mg, 0.6 mmol) in
methanol and stirred under nitrogen was added 10% Pd/C (30 mg, 0.03
mmol). The reaction mixture was purged with H.sub.2 and stirred for
24 hours under H.sub.2. The reaction was then filtered through
celite and the filtrate was concentrated under reduced pressure to
provide Intermediate 24-b as a beige solid.
Step 3: Intermediate 24-c
[0459] To a solution of Intermediate 24-b (230 mg, 0.6 mmol) in
EtOH (5.7 ml) was added cyanogen bromide (73 mg, 0.7 mmol) and the
reaction was stirred for 3 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 24-c as a beige solid.
Synthesis of Intermediate 25-b
##STR00138##
[0460] Step 1: Intermediate 25-a
[0461] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (75 mg, 0.4 mmol) in DMF (1.2 ml) cooled to 0.degree. C.
was added HATU (181 mg, 0.4 mmol) and after stirring for 30 minutes
a solution of Intermediate 24-c (120 mg, 0.3 mmol) and DIPEA (196
.mu.l, 1.1 mmol) in DMF (1.2 ml) was added dropwise. The reaction
was then stirred at room temperature for 1 day. A saturated aqueous
solution of ammonium chloride and ethyl acetate were then added,
the organic layer was separated, washed with a saturated aqueous
solution of ammonium chloride and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
25-a as a beige solid.
Step 2: Intermediate 25-b
[0462] To a solution of Intermediate 25-a (18 mg, 0.02 mmol) in
MeOH (500 .mu.l) was added 4N HCl in dioxane (1.0 ml, 4.0 mmol) at
room temperature and the solution was stirred overnight. Volatiles
were removed under reduced pressure and the residue was dried under
vacuum to provide Intermediate 25-b.HCl as beige solid.
Synthesis of Compound 64
##STR00139##
[0464] To a solution of Intermediate 25-b.HCl (18 mg, 0.04 mmol) in
tetrahydrofuran (370 .mu.l) cooled to -78.degree. C. were
sequentially added DIPEA (64 .mu.l, 0.4 mmol) and acryloyl chloride
(3.6 .mu.l, 0.04 mmol) and the reaction was stirred at -78.degree.
C. for 30 minutes. Water (20 mL) and ethyl acetate (20 mL) were
added; the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Compound 64 as a
white solid.
Synthesis of Intermediate 27-f
##STR00140## ##STR00141## ##STR00142##
[0465] Step 1: Intermediate 27-b
[0466] To a solution of 4-fluoro-3-nitrobenzoic acid 27-a (10.0 g,
54.0 mmol) in DMF (160 ml) cooled to 0.degree. C. were sequentially
added HATU (22.2 g, 58.5 mmol), cyclohexanamine (5.2 ml, 45.0 mmol)
and DIPEA (23.5 ml, 135.0 mmol). The reaction was stirred at room
temperature for 1 day. A saturated aqueous solution of ammonium
chloride and ethyl acetate were added, the organic layer was
separated, washed with a saturated aqueous solution of ammonium
chloride and brine, dried over anhydrous MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Intermediate 27-b as a yellow solid.
Step 2: Intermediate 27-c
[0467] To a suspension of NaH (60% dispersion in mineral oil, 397
mg, 9.9 mmol) in DMF was added Intermediate 27-b (1.5 g, 5.6 mmol)
and after stirring for 15 minutes at room temperature iodomethane
(828 .mu.l, 13.3 mmol) was added. After the addition was completed,
the reaction was stirred at 60.degree. C. for 1 hour and then
cooled to room temperature. Volatiles were removed under reduced
pressure. An aqueous solution of 1N HCl and ethyl acetate were
added to the residue, the organic layer was separated, washed with
a saturated aqueous solution of NaHCO.sub.3 and brine, dried over
anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 27-c as an orange oil.
Step 3: Intermediate 27-d
[0468] A solution of Intermediate 27-c (211 mg, 0.7 mmol),
Intermediate 20-e (140 mg, 0.7 mmol) and DIPEA (393 .mu.l, 2.2
mmol) in acetonitrile was stirred at room temperature for 1 day. A
saturated aqueous solution of ammonium chloride and ethyl acetate
were added, the organic layer was separated, washed with a
saturated aqueous solution of ammonium chloride and brine, dried
over anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 27-d as an orange solid.
Step 4: Intermediate 27-e
[0469] To a solution of Intermediate 27-d (336 mg, 0.7 mmol) in
methanol and stirred under nitrogen was added 10% Pd/C (40 mg, 0.04
mmol). The reaction mixture was purged with H.sub.2 and stirred for
1 day under H.sub.2. The reaction was then filtered through celite
and the filtrate was concentrated in vacuo to provide Intermediate
27-e as a purple oil.
Step 5: Intermediate 27-f
[0470] To a solution of Intermediate 27-e (270 mg, 0.6 mmol) in
EtOH (6.5 ml) was added cyanogen bromide (82 mg, 0.8 mmol) and the
reaction was stirred for 3 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 27-f as a beige solid.
Synthesis of Intermediate 28-b
##STR00143##
[0471] Step 1: Intermediate 28-a
[0472] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (61 mg, 0.34 mmol) in DMF (1.0 ml) cooled to 0.degree. C.
was added HATU (146 mg, 0.38 mmol) and after stirring for 30
minutes a solution of Intermediate 27-f (100 mg, 0.22 mmol) and
DIPEA (119 .mu.l, 0.68 mmol) in DMF (1.0 ml) was added dropwise.
The reaction was then stirred at room temperature for 1 day. A
saturated aqueous solution of ammonium chloride and ethyl acetate
were then added, the organic layer was separated, washed with a
saturated aqueous solution of ammonium chloride and brine, dried
over anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure. Purification by silica gel chromatography provided
Intermediate 28-a as a white solid.
Step 2: Intermediate 28-b
[0473] To a solution of Intermediate 28-a (73 mg, 0.12 mmol) in
MeOH (500 .mu.l) was added 4N HCl in 1,4-dioxane (3.0 ml, 12.0
mmol) at room temperature and the solution was stirred overnight.
Volatiles were removed under reduced pressure and the residue was
dried under vacuum to provide Intermediate 28-b.HCl as white
solid.
Synthesis of Compound 65
##STR00144##
[0475] To a solution of Intermediate 28-b.HCl (60 mg, 0.12 mmol) in
tetrahydrofuran (1.2 ml) cooled to -78.degree. C. were sequentially
added DIPEA (208 .mu.l, 1.2 mmol) and acryloyl chloride (xx .mu.l,
0.14 mmol) and the reaction was stirred at -78.degree. C. for 30
minutes. Water (20 mL) and ethyl acetate (20 mL) were added; the
organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Compound 65 as a white
solid.
[0476] Compound 48 was prepared in a similar manner to Compound 65
by replacing Intermediate 20-e with tert-butyl
3-aminophenylcarbamate 1-b for the synthesis of Intermediate
27-f.
Synthesis of Intermediate 30-c
##STR00145##
[0477] Step 1: Intermediate 30-a
[0478] A solution of Intermediate 27-b (1.0 g, 3.8 mmol),
Intermediate 20-e (699 mg, 3.8 mmol) and DIPEA (1.9 ml, 11.3 mmol)
in acetonitrile was stirred at room temperature for 1 day. A
saturated aqueous solution of ammonium chloride and ethyl acetate
were added, the organic layer was separated, washed with a
saturated aqueous solution of ammonium chloride and brine, dried
over anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 30-a as a yellow solid.
Step 2: Intermediate 30-b
[0479] To a solution of Intermediate 30-a (1.2 g, 2.8 mmol) in
methanol (28.0 ml) and stirred under nitrogen was added 10% Pd/C
(300 mg, 0.28 mmol). The reaction mixture was purged with H.sub.2
and stirred for 1 day under H.sub.2. The reaction was then filtered
through celite and the filtrate was concentrated under reduced
pressure to provide Intermediate 30-b as a beige solid.
Step 3: Intermediate 30-c
[0480] To a solution of Intermediate 30-b (410 mg, 1.0 mmol) in
EtOH (10.2 ml) was added cyanogen bromide (129 mg, 1.2 mmol) and
the reaction was stirred for 4 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 30-c as a beige solid.
Synthesis of Intermediate 31-b
##STR00146##
[0481] Step 1: Intermediate 31-a
[0482] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (275 mg, 1.5 mmol) in DMF (4.4 ml) cooled to 0.degree. C.
was added HATU (665 mg, 1.8 mmol) and after stirring for 30 minutes
a solution of Intermediate 30-c (440 mg, 1.0 mmol) and DIPEA (719
.mu.l, 4.1 mmol) in DMF (4.4 ml) was added dropwise. The reaction
was then stirred at room temperature for 1 day. A saturated aqueous
solution of ammonium chloride and ethyl acetate were then added,
the organic layer was separated, washed with a saturated aqueous
solution of ammonium chloride and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
31-a as a yellow solid.
Step 2: Intermediate 31-b
[0483] To a solution of Intermediate 31-a (17 mg, 0.03 mmol) in
MeOH (500 .mu.l) was added 4N HCl in dioxane (947 .mu.l, 3.8 mmol)
at room temperature and the solution was stirred overnight.
Volatiles were removed under reduced pressure and the residue was
dried under vacuum to provide Intermediate 31-b.HCl as white
solid.
Synthesis of Compound 70
##STR00147##
[0485] To a solution of Intermediate 31-b (15 mg, 0.03 mmol) in
tetrahydrofuran (300 .mu.l) cooled to -78.degree. C. were
sequentially added DIPEA (54 .mu.l, 0.3 mmol) and acryloyl chloride
(3.0 .mu.l, 0.04 mmol) and the reaction was stirred at -78.degree.
C. for 30 minutes. Water (20 mL) and ethyl acetate (20 mL) were
added; the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Compound 70 as a
white solid.
[0486] Compounds 53 was prepared in a similar manner to Compound 70
by replacing Intermediate 20-e with tert-butyl
3-aminophenylcarbamate 1-b for the synthesis of Intermediate
30-c.
Synthesis of Intermediate 33-f
##STR00148##
[0487] Step 1: Intermediate 33-b
[0488] To a solution of 4-iodo-3-nitroaniline 33-a (1.0 g, 3.8
mmol) in dichloromethane (10.8 ml) were sequentially added DIPEA
(1320 .mu.l, 7.6 mmol) and methanesulfonyl chloride (650 .mu.l, 8.4
mmol). After the addition was completed, the reaction was stirred
for 1 hour at room temperature. A saturated aqueous solution of
ammonium chloride and ethyl acetate were added; the organic layer
was separated, washed with brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Ethyl acetate was
added; the organic layer was separated, washed with brine, dried
over anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure to provide Intermediate 33-b as a white solid.
Step 2: Intermediate 33-c
[0489] To a solution of Intermediate 33-b (520 mg, 1.5 mmol) in
acetonitrile (4.3 ml) were sequentially added K.sub.2CO.sub.3 (630
mg, 4.6 mmol) and methyl iodide (285 .mu.l, 4.6 mmol). The reaction
was stirred at room temperature for 2 days and then filtered. The
filtrate was concentrated to half volume under reduced pressure, a
saturated aqueous solution of ammonium chloride and dichloromethane
were added; the organic layer was separated, washed with brine,
dried over anhydrous MgSO.sub.4, filtered and concentrated under
reduced pressure to provide Intermediate 33-c as a yellow
solid.
Step 3: Intermediate 33-d
[0490] A degassed solution of tert-butyl 3-aminophenylcarbamate 1-b
(639 mg, 3.1 mmol), Intermediate 33-c (500 mg, 1.5 mmol),
Cs.sub.2CO.sub.3 (1.4 g, 4.4 mmol), X-Phos (70 mg, 0.15 mmol) and
Pd.sub.2dba.sub.3 (37 mg, 0.07 mmol) in 1,4-dioxane (14.6 ml) was
heated at 100.degree. C. for 1 day and then cooled to room
temperature. A saturated aqueous solution of ammonium chloride and
ethyl acetate were then added, the organic layer was separated,
washed with a saturated aqueous solution of ammonium chloride and
brine, dried over anhydrous MgSO.sub.4, filtered and concentrated
under reduced pressure. Purification by silica gel chromatography
provided Intermediate 33-d as beige solid.
Step 4: Intermediate 33-e
[0491] To a solution of Intermediate 33-d (349 mg, 0.8 mmol) in
methanol and stirred under nitrogen was added 10% Pd/C (17 mg, 0.08
mmol). The reaction mixture was purged with H.sub.2 and stirred for
1 day under H.sub.2. The reaction was then filtered through celite
and the filtrate was concentrated in vacuo to provide Intermediate
33-e as a beige solid.
Step 5: Intermediate 33-f
[0492] To a solution of Intermediate 33-e (322 mg, 0.8 mmol) in
EtOH (7.9 ml) was added cyanogen bromide (105 mg, 1.0 mmol) and the
reaction was stirred at room temperature overnight. Volatiles were
removed under reduced pressure. A saturated aqueous solution of
ammonium chloride and ethyl acetate were then added to the residue,
the organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Intermediate 33-f as purple
foam.
Synthesis of Intermediate 34-b
##STR00149##
[0493] Step 1: Intermediate 34-a
[0494] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (52 mg, 0.3 mmol) in DMF (1.3 ml) was added HATU (132 mg,
0.3 mmol) and after stirring for 30 minutes a solution of
Intermediate 33-f (115 mg, 0.3 mmol) and DIPEA (140 .mu.l, 0.8
mmol) in DMF (2.0 ml) was added dropwise. The reaction was then
stirred at room temperature for 1 day. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added, the organic
layer was separated, washed with a saturated aqueous solution of
ammonium chloride and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Intermediate 34-a as a purple
solid.
Step 2: Intermediate 34-b
[0495] To a solution of Intermediate 34-a (100 mg, 0.17 mmol) in
MeOH (2 mL) was added 4N solution of HCl in dioxane (3 ml) and the
reaction was stirred at room temperature for 30 minutes. Volatiles
were removed under reduced pressure. Diethyl ether was added to the
residue; a precipitate formed and was collected by filtration to
provide Intermediate 34-b.HCl as a purple solid.
Synthesis of Compound 80
##STR00150##
[0497] To a solution of Intermediate 34-b (90 mg, 0.17 mmol) in
tetrahydrofuran (2.0 ml) cooled to 0.degree. C. were sequentially
added DIPEA (35 .mu.l, 0.2 mmol) and acryloyl chloride (14 .mu.l,
0.19 mmol) and the reaction was stirred at 0.degree. C. for 30
minutes. Water (20 mL) and ethyl acetate (20 mL) were added; the
organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Compound 80 as a white
solid.
Synthesis of Compound 72
##STR00151##
[0498] Step 1: Intermediate 36-a
[0499] To a solution of Intermediate 8-b (100 mg, 0.2 mmol) and
but-2-ynoic acid (20 mg, 0.2 mmol) in DMF (2.2 ml) were
sequentially added DIPEA (194 .mu.l, 1.1 mmol) and HATU (110 mg,
0.3 mmol) and the reaction was then stirred at room temperature for
1 day. A saturated aqueous solution of ammonium chloride and ethyl
acetate were then added, the organic layer was separated, washed
with a saturated aqueous solution of ammonium chloride and brine,
dried over anhydrous MgSO.sub.4, filtered and concentrated under
reduced pressure. Purification by silica gel chromatography
provided Intermediate 36-a as an off-white solid.
Step 2: Intermediate 36-b
[0500] To a solution of Intermediate 36-a (50 mg, 0.1 mmol) in THF
(1.0 ml) and DMSO (74 .mu.l) cooled to 0.degree. C. were
sequentially added DIPEA (73 .mu.l, 0.4 mmol) and a solution of
SO.sub.3 pyridine complex (50 mg, 0.3 mmol) in DMSO (1 mL). The
mixture was then stirred at 0.degree. C. for 1 day. Volatiles were
removed under reduced pressure, water was added, a precipitate
formed and was collected by filtration, washed with water and dried
under vacuum to provide Intermediate 36-b as beige solid.
Step 3: Compound 72
[0501] To a solution of Intermediate 36-b (25 mg, 0.05 mmol) and
(S)-3,3-dimethylbutan-2-amine (7.1 .mu.l, 0.05 mmol) in THF (1.0
ml) and acetonitrile (1 ml), were sequentially added 1 drop of
acetic acid and sodium triacetoxyborohydride (17 mg, 0.07 mmol) and
the reaction was stirred overnight at room temperature. Volatiles
were removed under reduced pressure. Purification by silica gel
chromatography provided Compound 72 as white solid.
[0502] Compounds 83 and 84 were prepared in a similar manner to
Compound 72 by replacing
##STR00152##
with
##STR00153##
respectively.
Synthesis of Compound 78
##STR00154##
[0503] Step 1: Intermediate 37-a
[0504] To a solution of (E)-4-bromobut-2-enoic acid (51 mg, 0.3
mmol) in dichloromethane cooled to -78.degree. C. were sequentially
added oxalyl chloride (49 .mu.l, 0.6 mmol) and DMF (217 .mu.l, 2.8
mmol) and the reaction was stirred at -78.degree. C. for 1 hour.
Volatiles were removed under reduced pressure and the residue was
dissolved in dichloromethane.
[0505] To a solution of Intermediate 8-b (116 mg, 0.3 mmol) in THF
(2 ml) cooled to -78.degree. C. was added DIPEA (245 .mu.l, 1.4
mmol) and a solution of (E)-4-bromobut-2-enoyl chloride prepared
above and after completion, a 1M solution of dimethylamine in THF
(2.8 ml, 2.8 mmol) was added and the reaction was then stirred at
room temperature overnight. Volatiles were removed under reduced
pressure. Purification by silica gel chromatography provided
Intermediate 37-a as a beige solid.
Step 2: Intermediate 37-b
[0506] To a solution of Intermediate 37-a (110 mg, 0.2 mmol) in THF
(1.7 ml) and DMSO (122 .mu.l) cooled to 0.degree. C. were
sequentially added DIPEA (150 .mu.l, 0.8 mmol) and a solution of
SO.sub.3 pyridine complex (82 mg, 0.5 mmol) in DMSO (1 mL). The
mixture was then stirred at 0.degree. C. overnight. Volatiles were
removed under reduced pressure, water was added, a precipitate
formed and was collected by filtration, washed with water and dried
under vacuum to provide Intermediate 37-b as a beige solid.
Step 3: Compound 78
[0507] To a solution of Intermediate 37-b (90 mg, 0.2 mmol) and
(S)-3,3-dimethylbutan-2-amine 1-d (27 .mu.l, 0.2 mmol) in
1,2-dichloroethane (2.0 ml), were sequentially added 1 drop of
acetic acid and sodium triacetoxyborohydride (55 mg, 0.2 mmol) and
the reaction was stirred overnight at room temperature. Volatiles
were removed under reduced pressure. Purification by silica gel
chromatography provided Compound 78 as white solid.
Synthesis of Intermediate 38-e
##STR00155##
[0508] Step 1: Intermediate 38-b
[0509] To a solution of 4-iodo-3-nitrophenol 38-a (3.0 g, 11.3
mmol) in acetone (113 ml) was added potassium carbonate (1.5 g,
11.3 mmol) and after stirring for 5 minutes, benzyl bromide (1.3
ml, 11.3 mmol) was added. The reaction was stirred at reflux for 4
hours, then cooled to room temperature and filtered. Volatiles were
removed under reduced pressure to provide Intermediate 38-b as a
yellow solid.
Step 2: Intermediate 38-c
[0510] A degassed solution of tert-butyl 3-aminophenylcarbamate 1-b
(1.2 g, 5.9 mmol), Intermediate 38-b (1.0 g, 2.8 mmol),
Cs.sub.2CO.sub.3 (2.7 g, 8.4 mmol), X-Phos (100 mg, 0.3 mmol) and
Pd.sub.2dba.sub.3 (129 mg, 0.14 mmol) in dioxane (28.1 ml) was
heated at 100.degree. C. for 1 day and then cooled to room
temperature. A saturated aqueous solution of ammonium chloride and
ethyl acetate were then added, the organic layer was separated,
washed with a saturated aqueous solution of ammonium chloride and
brine, dried over anhydrous MgSO.sub.4, filtered and concentrated
under reduced pressure. Purification by silica gel chromatography
provided Intermediate 38-c as a red solid.
Step 3: Intermediate 38-d
[0511] To a solution of Intermediate 38-c (1.2 g, 2.8 mmol) in
methanol (28.0 ml) and stirred under nitrogen was added 10% Pd/C
(298 mg, 0.28 mmol). The reaction mixture was purged with H.sub.2
and stirred for 1 day under H.sub.2. The reaction was then filtered
through celite and the filtrate was concentrated in vacuo.
Purification by silica gel chromatography provided Intermediate
38-d as purple solid.
Step 4: Intermediate 38-e
[0512] To a solution of Intermediate 38-d (470 mg, 1.1 mmol) in
EtOH (11.6 ml) was added cyanogen bromide (184 mg, 1.7 mmol) and
the reaction was stirred for 6 hours at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 38-e as a purple solid.
Synthesis of Intermediate 39-b
##STR00156##
[0513] Step 1: Intermediate 39-a
[0514] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (214 mg, 1.2 mmol) in DMF (10.0 ml) cooled to 0.degree. C.
was added HATU (494 mg, 1.3 mmol) and after stirring for 30 minutes
a solution of Intermediate 38-e (430 mg, 1.0 mmol) and DIPEA (523
.mu.l, 3.0 mmol) in DMF (2.0 ml) was added dropwise. The reaction
was then stirred at room temperature for 1 day. A saturated aqueous
solution of ammonium chloride and ethyl acetate were then added,
the organic layer was separated, washed with a saturated aqueous
solution of ammonium chloride and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
39-a as a purple solid.
Step 2: Intermediate 39-b
[0515] To a solution of Intermediate 39-a (100 mg, 0.1 mmol) in
dichloromethane (1.0 ml) was added TFA (1.0 ml, 13.1 mmol) at
0.degree. C. and the solution was stirred at room temperature for
30 minutes. Volatiles were removed under reduced pressure to
provide Intermediate 39-b.TFA as a beige oil.
Synthesis of Compound 79
##STR00157##
[0517] To a solution of Intermediate 39-b TFA (25 mg, 0.05 mmol) in
tetrahydrofuran (510 .mu.l) cooled to 0.degree. C. were
sequentially added DIPEA (89 .mu.l, 0.5 mmol) and acryloyl chloride
(8.2 .mu.l, 0.1 mmol) and the reaction was stirred at 0.degree. C.
for 30 minutes. Water (20 mL) and ethyl acetate (20 mL) were added;
the organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Compound 79 as an off-white
solid.
Synthesis of Intermediate 41-e
##STR00158##
[0518] Step 1: Intermediate 41-b
[0519] To a solution of Intermediate 41-a (1.4 g, 5.0 mmol) in
dichloromethane (25 ml) were sequentially added a saturated aqueous
solution of NaHCO.sub.3 (25.0 ml) and benzyl chloroformate (1.4 ml,
10.1 mmol) and the reaction was then stirred at room temperature
until completion. A saturated aqueous ammonium chloride solution
and ethyl acetate were added; the organic layer was separated,
washed with a saturated aqueous solution of ammonium chloride and
brine, dried over anhydrous MgSO.sub.4, filtered and concentrated
under reduced pressure to provide Intermediate 41-b as a yellow
solid.
Step 2: Intermediate 41-c
[0520] A degassed solution of tert-butyl 3-aminophenylcarbamate 1-b
(2.1 g, 10.2 mmol), Intermediate 41-b (2.0 g, 4.8 mmol),
Cs.sub.2CO.sub.3 (4.7 g, 14.6 mmol), X-Phos (231 mg, 0.5 mmol) and
Pd.sub.2dba.sub.3 (222 mg, 0.24 mmol) in dioxane (48.5 ml) was
heated at 100.degree. C. for 1 day and then cooled to room
temperature. A saturated aqueous solution of ammonium chloride and
ethyl acetate were then added, the organic layer was separated,
washed with a saturated aqueous solution of ammonium chloride and
brine, dried over anhydrous MgSO.sub.4, filtered and concentrated
under reduced pressure. Purification by silica gel chromatography
provided Intermediate 41-c as yellow solid.
Step 3: Intermediate 41-d
[0521] To a solution of Intermediate 41-c (820 mg, 1.7 mmol) in
MeOH (11.1 ml) was added a saturated aqueous solution of ammonium
chloride (3.0 ml) and zinc dust (544 mg, 8.3 mmol) portion wise.
The reaction was then stirred at 50.degree. C. for 2 hours, then
cooled to room temperature and filtered over celite. The filtrate
was concentrated under reduced pressure. Diethyl ether and a
saturated aqueous solution of ammonium chloride were added to the
residue, the organic layer was separated, washed with brine, dried
over MgSO.sub.4, filtered and concentrated under reduced pressure.
Purification by silica gel chromatography provided Intermediate
41-d as a purple solid.
Step 3: Intermediate 41-e
[0522] To a solution of Intermediate 41-d (468 mg, 1.0 mmol) in
EtOH (20.2 ml) was added cyanogen bromide (129 mg, 1.2 mmol) and
the reaction was stirred overnight at room temperature. Volatiles
were removed under reduced pressure. A saturated aqueous solution
of ammonium chloride and ethyl acetate were then added to the
residue, the organic layer was separated, washed with a saturated
aqueous solution of NaHCO.sub.3 and brine, dried over anhydrous
MgSO.sub.4, filtered and concentrated under reduced pressure to
provide Intermediate 41-e as a purple foam.
Synthesis of Intermediate 42-b
##STR00159##
[0523] Step 1: Intermediate 42-a
[0524] To a solution of 5-(difluoromethyl)thiophene-2-carboxylic
acid 2-a (67 mg, 0.4 mmol) in DMF (1.7 ml) cooled to 0.degree. C.
was added HATU (168 mg, 0.4 mmol) and after stirring for 30 minutes
a solution of Intermediate 41-e (166 mg, 0.3 mmol) and DIPEA (178
.mu.l, 0.4 mmol) in DMF (2.0 ml) was added dropwise. The reaction
was then stirred at room temperature for 4 hours. A saturated
aqueous solution of ammonium chloride and ethyl acetate were then
added, the organic layer was separated, washed with a saturated
aqueous solution of ammonium chloride and brine, dried over
anhydrous MgSO.sub.4, filtered and concentrated under reduced
pressure. Purification by silica gel chromatography provided
Intermediate 42-a as a purple solid.
Step 2: Intermediate 42-b
[0525] To a solution of Intermediate 42-a (125 mg, 0.2 mmol) in
methanol (5.0 ml) and stirred under nitrogen was added 10% Pd/C (41
mg, 0.02 mmol). The reaction mixture was purged with H.sub.2 and
stirred for 24 hours under H.sub.2. The reaction was then filtered
through celite and the filtrate was concentrated under reduced
pressure to provide Intermediate 42-b as beige solid.
Step 3: Intermediate 42-c
[0526] To a solution of (S)-2-morpholinopropanoic acid (15 mg, 0.09
mmol) in DMF (400 .mu.l) cooled to 0.degree. C. was added HATU (41
mg, 0.1 mmol) and after stirring for 30 minutes a solution of
Intermediate 42-b (52 mg, 0.08 mmol) and DIPEA (43 .mu.l, 0.2 mmol)
in DMF (2.0 ml) was added dropwise. The reaction was then stirred
at room temperature for 1 week. A saturated aqueous solution of
ammonium chloride and ethyl acetate were then added, the organic
layer was separated, washed with a saturated aqueous solution of
ammonium chloride and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Intermediate 42-c as a purple
solid.
Step 4: Intermediate 42-d
[0527] To a solution of Intermediate 42-c (50 mg, 0.07 mmol) in
methanol (2.0 ml) was added a 4.0 N solution of HCl in 1,4-dioxane
(5 ml, 20 mmol) at 0.degree. C. and the solution was stirred at
room temperature for 30 minutes. Volatiles were removed under
reduced pressure to provide Intermediate 42-d HCl as a purple
solid.
Synthesis of Compound 77
##STR00160##
[0529] To a solution of Intermediate 42-d HCl (50 mg, 0.08 mmol) in
tetrahydrofuran (2.0 ml) cooled to 0.degree. C. were sequentially
added DIPEA (69 .mu.l, 0.4 mmol) and acryloyl chloride (6.4 .mu.l,
0.08 mmol) and the reaction was stirred at 0.degree. C. for 30
minutes. Water and ethyl acetate were added; the organic layer was
separated, washed with a saturated aqueous solution of NaHCO.sub.3
and brine, dried over anhydrous MgSO.sub.4, filtered and
concentrated under reduced pressure. Purification by silica gel
chromatography provided Compound 77 as a white solid.
Synthesis of Compound 36
##STR00161##
[0531] To a solution of compound 2 (80 mg, 0.1 mmol) in
dichloromethane (1.5 ml) cooled to 0.degree. C. were sequentially
added TEA (201 .mu.l, 1.5 mmol) and acetyl chloride (12 .mu.l, 0.17
mmol) and the reaction was then stirred at room temperature for 3
hours. Water (20 mL) and ethyl acetate (20 mL) were added; the
organic layer was separated, washed with a saturated aqueous
solution of NaHCO.sub.3 and brine, dried over anhydrous MgSO.sub.4,
filtered and concentrated under reduced pressure. Purification by
silica gel chromatography provided Compound 36 as a beige
solid.
TABLE-US-00001 TABLE 1 Example Compounds of Formula I Compound
Structure MS (m/z) 1 ##STR00162## [M + H].sup.+ = 530.3 2
##STR00163## [M + H].sup.+ = 552.3 3 ##STR00164## [M + H].sup.+ =
558.3 4 ##STR00165## [M + H].sup.+ = 552.4 5 ##STR00166## [M +
H].sup.+ = 566.4 6 ##STR00167## [M + H].sup.+ = 544.3 7
##STR00168## [M + H].sup.+ = 514.3 8 ##STR00169## [M + H].sup.+ =
526.4 9 ##STR00170## [M + H].sup.+ = 521.2 10 ##STR00171## [M +
H].sup.+ = 530.6 11 ##STR00172## [M + H].sup.+ = 521.4 12
##STR00173## [M + H].sup.+ = 503.3 13 ##STR00174## [M + H].sup.+ =
502.3 14 ##STR00175## [M + H].sup.+ = 550.3 15 ##STR00176## [M +
H].sup.+ = 531.2 16 ##STR00177## [M + H].sup.+ = 497.2 17
##STR00178## [M + H].sup.+ = 503.3 18 ##STR00179## [M + H].sup.+ =
544.2 19 ##STR00180## [M + H].sup.+ = 497.4 20 ##STR00181## [M +
H].sup.+ = 514.3 21 ##STR00182## [M + H].sup.+ = 524.3 22
##STR00183## [M + H].sup.+ = 568.3 23 ##STR00184## [M + H].sup.+ =
538.3 24 ##STR00185## [M + H].sup.+ = 526.4 25 ##STR00186## [M +
H].sup.+ = 569.3 26 ##STR00187## [M + H].sup.+ = 512.3 27
##STR00188## [M + H].sup.+ = 497.3 28 ##STR00189## [M + H].sup.+ =
500.4 29 ##STR00190## [M + H].sup.+ = 554.3 30 ##STR00191## [M +
H].sup.+ = 552.3 31 ##STR00192## [M + H].sup.+ = 566.3 32
##STR00193## [M + H].sup.+ = 522.3 33 ##STR00194## [M + H].sup.+ =
570.3 34 ##STR00195## [M + H].sup.+ = 570.3 35 ##STR00196## [M +
H].sup.+ = 566.3 36 ##STR00197## [M + H].sup.+ = 594.3 37
##STR00198## [M + H].sup.+ = 602.3 38 ##STR00199## [M + H].sup.+ =
487.3 39 ##STR00200## [M + H].sup.+ = 526.7 40 ##STR00201## [M +
H].sup.+ = 496.2 41 ##STR00202## [M + H].sup.+ = 498.3 42
##STR00203## [M + H].sup.+ = 487.1 43 ##STR00204## [M + H].sup.+ =
503.3 44 ##STR00205## [M + H].sup.+ = 552.3 45 ##STR00206## [M +
H].sup.+ = 552.2 46 ##STR00207## [M + H].sup.+ = 570.2 47
##STR00208## [M + H].sup.+ = 568.2 48 ##STR00209## [M + H].sup.+ =
578.3 49 ##STR00210## [M + H].sup.+ = 500.2 50 ##STR00211## [M +
H].sup.+ = 538.2 51 ##STR00212## [M + H].sup.+ = 624.1 52
##STR00213## [M + H].sup.+ = 624.1 53 ##STR00214## [M + H].sup.+ =
564.2 54 ##STR00215## [M + H].sup.+ = 527.4 55 ##STR00216## [M +
H].sup.+ = 503.4 56 ##STR00217## [M + H].sup.+ = 578.3 57
##STR00218## [M + H].sup.+ = 594.4 58 ##STR00219## [M + H].sup.+ =
572.3 59 ##STR00220## [M + H].sup.+ = 581.2 60 ##STR00221## [M +
H].sup.+ = 624.1 61 ##STR00222## [M + H].sup.+ = 566.2 62
##STR00223## [M + H].sup.+ = 544.2 63 ##STR00224## [M + H].sup.+ =
556.3 64 ##STR00225## [M + H].sup.+ = 542.2 65 ##STR00226## [M +
H].sup.+ = 556.2 66 ##STR00227## [M + H].sup.+ = 669.2 67
##STR00228## [M + H].sup.+ = 509.3 68 ##STR00229## [M + H].sup.+ =
558.3 69 ##STR00230## [M + H].sup.+ = 469.2 70 ##STR00231## [M +
H].sup.+ = 542.2 71 ##STR00232## [M + H].sup.+ = 575.4 72
##STR00233## [M + H].sup.+ = 564.3 73 ##STR00234## [M + H].sup.+ =
489.2 74 ##STR00235## [M + H].sup.+ = 501.2 75 ##STR00236## [M +
H].sup.+ = 517.2 76 ##STR00237## [M + H].sup.+ = 473.3 77
##STR00238## [M + H].sup.+ = 609.2 78 ##STR00239## [M + H].sup.+ =
609.2 79 ##STR00240## [M + H].sup.+ = 545.1 80 ##STR00241## [M +
H].sup.+ = 546.1 81 ##STR00242## [M + H].sup.+ = 558.3 82
##STR00243## [M + H].sup.+ = 545.3 83 ##STR00244## [M + H].sup.+ =
566.2 84 ##STR00245## [M + H].sup.+ = 570.2 85 ##STR00246## [M +
H].sup.+ = 467.1 86 ##STR00247## [M + H].sup.+ = 413.4 87
##STR00248## [M + H].sup.+ = 402.4 88 ##STR00249## [M + H].sup.+ =
418.4
[0532] The compounds in the table above form part of the invention
in addition to pharmaceutically acceptable salts thereof.
[0533] Some of the above compounds have one or more chiral centres,
for example one or two chiral centres. All enantiomers and
diastereomers of the above compounds are contemplated by the
invention. In one embodiment the compounds of the invention have
the (R)-configuration at the stereocentre. In an alternative
embodiment the compounds of the invention have the
(S)-configuration at the stereocentre. Where compounds have two
stereocentres the stereocentres may have (R),(R) configuration,
(S),(R) configuration, (R),(S) configuration or (S),(S)
configuration. The invention also contemplates racemic mixtures of
these compounds.
[0534] Assays for determining kinase activity are described in more
detail in the accompanying examples.
Example 2: CD3/CD28 Mediated PBMC Proliferation Assay
[0535] Inhibition of cellular ITK was assessed by measuring
proliferation of PBMCs following stimulation with anti-CD3 and
anti-CD28 antibodies. Individual wells of 96 well tissue culture
plates were coated with 50 .mu.L of 5 .mu.g/mL anti-CD3 (OKT3,
eBiosciences) for 2 hours at 37.degree. C. Human PBMCs (Stemcell
Technologies catalog #70025.3) were plated in 96-well plates at a
final concentration of 9.2.times.10e5 cells/mL in complete media
(RPMI, 10% heat inactivated FBS, 55 uM .beta.-mercaptoethanol) and
pre-treated with compound curves for 30 minutes at 37.degree. C.,
5% CO.sub.2. Pre-treated cells plus compounds were transferred to
washed anti-CD3 coated plates. Soluble anti-CD28 (CD28.2
eBiosciences) was added to each well at a final concentration of 2
.mu.g/mL. The cells were placed in a humidified 37.degree. C.
incubator with 5% CO.sub.2 for 72 hours and metabolic viability was
measured by quantification of ATP levels with Cell Titer-Glo
(Promega catalog #G9242). Controls included unstimulated cells and
vehicle alone. EC50 values (50% proliferation in the presence of
compound as compared to vehicle treated controls) were calculated
from dose response compound curves using GraphPad Prism
Software.
TABLE-US-00002 TABLE 2 Results Compound EC.sub.50(nM) 1 b 2 b 3 c 4
c 5 b 6 b 7 b 8 c 9 b 10 b 11 b 12 c 13 b 14 b 15 b 16 b 17 b 18 b
19 b 20 c 21 a 22 a 23 a 24 c 25 a 26 c 27 c 28 b 29 a 30 a 31 a 32
a 33 a 34 c 35 a 36 b 37 c 38 b 39 a 40 a 41 b 42 b 43 a 44 a 45 a
46 b 47 a 48 b 49 c 50 a 51 a 52 a 53 b 54 c 55 c 56 b 57 b 58 c 59
a 60 a 61 a 62 c 63 c 64 c 65 c 66 b 67 c 68 a 69 b 70 c 71 b 72 c
73 b 74 c 75 c 76 b 77 b 78 c 79 c 80 b 81 b 83 c 84 b a--EC.sub.50
< 10 nM; b--10 nM < EC.sub.50 < 100 nM, c--EC.sub.50 >
100 nM
Example 3: Jurkat IL-2 Release Assay
[0536] Inhibition of cellular ITK was assessed by measuring release
of IL-2 following stimulation with anti-CD3 and anti-CD28
antibodies. Individual wells of 96 well tissue culture plates were
coated with 50 .mu.L of 10 .mu.g/mL anti-CD3 (OKT3, eBiosciences)
for 2 hours at 37.degree. C. Jurkat human acute T cell leukemia
cells (ATCC) were plated in 96-well plates at a final concentration
of 9.2.times.10e5 cells/mL in complete media (RPMI, 10% FBS, 1.5
g/L sodium bicarbonate, 10 mM Hepes, 1 mM sodium pyruvate, 4.5 g/L
glucose) and pre-treated with compound curves for 30 minutes at
37.degree. C., 5% CO.sub.2. Pre-treated cells plus compounds were
transferred to washed anti-CD3 coated plates. Soluble anti-CD28
(CD28.2 eBiosciences) was added to each well at a final
concentration of 1 .mu.g/mL. The cells were placed in a humidified
37.degree. C. incubator with 5% CO.sub.2 for 48 hours and IL-2
release was measured using a commercial ELISA (BD Bioscience
catalog #555190). Controls included unstimulated cells and vehicle
alone. EC50 values (50% IL-2 release in the presence of compound as
compared to vehicle treated controls) were calculated from dose
response compound curves using GraphPad Prism Software.
TABLE-US-00003 TABLE 4 Results Compound EC.sub.50 (nM) 1 b 2 a 3 b
4 b 5 a 6 a 7 b 8 b 9 b 10 b 11 c 12 c 13 b 14 a 15 b 16 b 17 b 18
a 19 a 20 b 21 b 22 a 23 a 24 c 25 a 26 b 27 c 28 a 29 a 30 b 31 a
32 a 33 a 34 c 35 b 36 b 37 c 38 a 39 b 40 b 41 a 42 a 43 a 50 a 54
c 57 b 59 a 62 b 67 b 72 b 73 a 76 a 77 a 78 b 80 b 81 a 82 b 84 b
a--EC.sub.50 < 10 nM; b--10 nM < EC.sub.50 < 100 nM,
c--EC.sub.50 > 100 nM
Example 4: ITK Kinase Inhibition Assay
[0537] The in vitro kinase assays were performed at Nanosyn
utilizing micro-fluidic detection technology. The test compounds
were serially pre-diluted in DMSO and added, by the acoustic
dispensing (Labcyte.RTM. 550), directly to 384 well assay plates
into 10 uL of a buffer with enzyme comprising: 100 mM HEPES, pH7.5,
5 mM MgCl.sub.2, 0.1% bovine serum albumin, 1 mM DTT, 0.01% Triton
X-100 and the enzyme. Final DMSO concentration was maintained at 1%
in all samples, including the controls. The reactions were
initiated by addition of ATP (to the specified concentration) and
the fluorescently labeled peptide substrate to a final
concentration of 1 uM, and incubated for 3 hours at 25.degree. C.
Following incubation, the reactions were quenched by addition of 40
.mu.L of termination buffer (100 mM HEPES, pH7.5, 0.01% Triton
X-100, 50 mM EDTA). Terminated plates were analyzed using Caliper
LabChip.RTM. 3000 microfluidic electrophoresis instrument (Caliper
Life Sciences/Perkin Elmer). The enzymatic modification of the
peptide substrate (phosphorylation) results in a change of net
charge enabling electrophoretic separation of product from
substrate. As substrate and product are separated by
electrophoresis, two peaks of fluorescence are observed. Change in
the relative fluorescence intensity of the substrate and product
peaks was the parameter measured, reflecting enzyme activity. In
the presence of inhibitor, the ratio between product and substrate
is altered: signal of the product decreases, while the signal of
the substrate increases. Activity in each test sample was
determined as the product to sum ratio (PSR):P/(S+P), where P is
the peak height of the product and S is the peak height of the
FAM-cAMP substrate. For each compound, enzyme activity was measured
at 12 concentrations spaced by 3.times. dilution intervals.
Negative control samples (0%-inhibition in the absence of
inhibitor, DMSO only) and positive control samples
(100%-inhibition, in the absence of enzyme or in the presence of
control inhibitor) were assembled in replicates of four and were
used to calculate %-inhibition values in the presence of compounds.
Percent inhibition (P.sub.inh) was determined using the following
equation:
P.sub.inh.dbd.(PSR.sub.0%-PSR.sub.inh)/(PSR.sub.0%-PSR.sub.100%)*100,
where PSR.sub.inh is the product sum ratio in the presence of
inhibitor, PSR.sub.0% is the product sum ratio in the absence of
inhibitor and PSR.sub.100% is the product sum ratio in
100%-inhibition control samples. To determine IC.sub.50 values, the
inhibition curves (P.sub.inh versus inhibitor concentration) were
fitted by 4 parameter sigmoid dose-response model using XLfit
software (IDBS).
TABLE-US-00004 TABLE 5 Results of ITK kinase inhibition Compound
EC.sub.50 (nM) 1 a 2 a 3 b 9 a 11 a 12 c 16 a 17 b 18 a 19 a 25 a
27 c 28 a 31 a 38 a 42 b 43 a 50 a 62 a 68 a 77 a 81 a a--EC.sub.50
< 10 nM; b--10 nM < EC.sub.50 < 100 nM, c--EC.sub.50 >
100 nM
Example 5: RLK/TXK Kinase Inhibition Assay
[0538] The in vitro kinase assays were performed at Nanosyn
utilizing micro-fluidic detection technology. The test compounds
were serially pre-diluted in DMSO and added, by the acoustic
dispensing (Labcyte.RTM. 550), directly to 384well assay plates
into 10 uL of a buffer with enzyme comprising: 100 mM HEPES, pH7.5,
5 mM MgCl.sub.2, 0.1% bovine serum albumin, 1 mM DTT, 0.01% Triton
X-100 and the enzyme. Final DMSO concentration was maintained at 1%
in all samples, including the controls. The reactions were
initiated by addition of ATP (to the specified concentration) and
the fluorescently labeled peptide substrate to a final
concentration of 1 uM, and incubated for 3 hours at 25.degree. C.
Following incubation, the reactions were quenched by addition of 40
.mu.L of termination buffer (100 mM HEPES, pH7.5, 0.01% Triton
X-100, 50 mM EDTA). Terminated plates were analyzed using Caliper
LabChip.RTM. 3000 microfluidic electrophoresis instrument (Caliper
Life Sciences/Perkin Elmer). The enzymatic modification of the
peptide substrate (phosphorylation) results in a change of net
charge enabling electrophoretic separation of product from
substrate. As substrate and product are separated by
electrophoresis, two peaks of fluorescence are observed. Change in
the relative fluorescence intensity of the substrate and product
peaks was the parameter measured, reflecting enzyme activity. In
the presence of inhibitor, the ratio between product and substrate
is altered: signal of the product decreases, while the signal of
the substrate increases. Activity in each test sample was
determined as the product to sum ratio (PSR): P/(S+P), where P is
the peak height of the product and S is the peak height of the
FAM-cAMP substrate. For each compound, enzyme activity was measured
at 12 concentrations spaced by 3.times. dilution intervals.
Negative control samples (0%-inhibition in the absence of
inhibitor, DMSO only) and positive control samples
(100%-inhibition, in the absence of enzyme or in the presence of
control inhibitor) were assembled in replicates of four and were
used to calculate %-inhibition values in the presence of compounds.
Percent inhibition (P.sub.inh) was determined using the following
equation:
P.sub.inh=(PSR.sub.0%-PSR.sub.inh)/(PSR.sub.0%-PSR.sub.100%)*100,
where PSR.sub.inh is the product sum ratio in the presence of
inhibitor, PSR.sub.0% is the product sum ratio in the absence of
inhibitor and PSR.sub.100% is the product sum ratio in
100%-inhibition control samples. To determine IC.sub.50 values, the
inhibition curves (P.sub.inh versus inhibitor concentration) were
fitted by 4 parameter sigmoid dose-response model using XLfit
software (IDBS).
TABLE-US-00005 TABLE 6 Results of RLK/TXK kinase inhibition
Compound EC.sub.50 (nM) 1 b 2 a 3 b 9 a 11 a 12 b 16 a 17 a 18 a 19
b 25 a 27 c 28 a 31 a 38 a 42 b 43 a 50 a 62 b 68 a 77 a 81 b
a--EC.sub.50 < 10 nM; b--10 nM < EC.sub.50 < 100 nM,
c--EC.sub.50 > 100 nM
Example 6: Tec Kinase Inhibition Assay
[0539] The in vitro kinase assays were performed at Nanosyn
utilizing micro-fluidic detection technology. The test compounds
were serially pre-diluted in DMSO and added, by the acoustic
dispensing (Labcyte.RTM. 550), directly to 384well assay plates
into 10 uL of a buffer with enzyme comprising: 100 mM HEPES, pH7.5,
5 mM MgCl.sub.2, 0.1% bovine serum albumin, 1 mM DTT, 0.01% Triton
X-100 and the enzyme. Final DMSO concentration was maintained at 1%
in all samples, including the controls. The reactions were
initiated by addition of ATP (to the specified concentration) and
the fluorescently labeled peptide substrate to a final
concentration of 1 uM, and incubated for 3 hours at 25.degree. C.
Following incubation, the reactions were quenched by addition of 40
.mu.L of termination buffer (100 mM HEPES, pH7.5, 0.01% Triton
X-100, 50 mM EDTA). Terminated plates were analyzed using Caliper
LabChip.RTM. 3000 microfluidic electrophoresis instrument (Caliper
Life Sciences/Perkin Elmer). The enzymatic modification of the
peptide substrate (phosphorylation) results in a change of net
charge enabling electrophoretic separation of product from
substrate. As substrate and product are separated by
electrophoresis, two peaks of fluorescence are observed. Change in
the relative fluorescence intensity of the substrate and product
peaks was the parameter measured, reflecting enzyme activity. In
the presence of inhibitor, the ratio between product and substrate
is altered: signal of the product decreases, while the signal of
the substrate increases. Activity in each test sample was
determined as the product to sum ratio (PSR): P/(S+P), where P is
the peak height of the product and S is the peak height of the
FAM-cAMP substrate. For each compound, enzyme activity was measured
at 12 concentrations spaced by 3.times. dilution intervals.
Negative control samples (0%-inhibition in the absence of
inhibitor, DMSO only) and positive control samples
(100%-inhibition, in the absence of enzyme or in the presence of
control inhibitor) were assembled in replicates of four and were
used to calculate %-inhibition values in the presence of compounds.
Percent inhibition (P.sub.inh) was determined using the following
equation:
P.sub.inh=(PSR.sub.0%-PSR.sub.inh)/(PSR.sub.0%-PSR.sub.100%)*100,
where PSR.sub.inh is the product sum ratio in the presence of
inhibitor, PSR.sub.0% is the product sum ratio in the absence of
inhibitor and PSR.sub.100% is the product sum ratio in
100%-inhibition control samples. To determine IC.sub.50 values, the
inhibition curves (P.sub.inh versus inhibitor concentration) were
fitted by 4 parameter sigmoid dose-response model using XLfit
software (IDBS).
TABLE-US-00006 TABLE 7 Results of Tec kinase inhibition Compound
EC.sub.50 (nM) 2 b 9 b 25 a 28 b 38 b a--EC.sub.50 < 10 nM;
b--10 nM < EC.sub.50 < 100 nM, c--EC.sub.50 > 100 nM
* * * * *