U.S. patent application number 16/378067 was filed with the patent office on 2019-10-10 for fluidic autosampler and incubator.
The applicant listed for this patent is Lumacyte, LLC. Invention is credited to Zachary Evans, Christopher Field, Sean Hart, Colin Hebert, Shewta Krishnan, Nathan LaPuma, Adam Lubrano, Margaret McCoy.
Application Number | 20190308191 16/378067 |
Document ID | / |
Family ID | 68096308 |
Filed Date | 2019-10-10 |
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United States Patent
Application |
20190308191 |
Kind Code |
A1 |
Hart; Sean ; et al. |
October 10, 2019 |
FLUIDIC AUTOSAMPLER AND INCUBATOR
Abstract
Provided are devices for automated analysis of one or more
samples in single or multi-well plates or vessels, wherein the
process of automated analysis comprises automated flow, wherein the
samples comprise liquid or particles in a sample vessel, and
wherein the devices comprise an assembly of components that enable
processing of a sample for analytical assessment by fluidic and/or
particle based instruments. Automated flow may comprise systems for
moving samples including vacuum systems, pressure-based systems,
pneumatic systems, pumps, peristaltic pumps, diaphragms, or
syringes. The devices may comprise an assembly of components that
enable movement in X, Y, and Z dimensions, as well as switches,
microfluidic tubing, well plate block, electronic pressure
controllers, pneumatic or fluidic mixing devices, components for
fluid handling, sampling vessels, and mechanical components for
translating or transporting system components.
Inventors: |
Hart; Sean; (Keswick,
VA) ; Hebert; Colin; (Charlottesville, VA) ;
McCoy; Margaret; (Charlottesville, VA) ; Krishnan;
Shewta; (Malden, MA) ; Field; Christopher;
(Arlington, VA) ; Evans; Zachary;
(Charlottesville, VA) ; Lubrano; Adam;
(Waynesboro, VA) ; LaPuma; Nathan; (Palmyra,
VA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Lumacyte, LLC |
Charlottesville |
VA |
US |
|
|
Family ID: |
68096308 |
Appl. No.: |
16/378067 |
Filed: |
April 8, 2019 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
|
|
62654335 |
Apr 7, 2018 |
|
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|
Current U.S.
Class: |
1/1 |
Current CPC
Class: |
B01L 3/502715 20130101;
B01L 3/502784 20130101; G01N 2035/1058 20130101; G01N 2035/00346
20130101; G01N 35/1095 20130101; G01N 2035/0418 20130101; B01L
3/50273 20130101; G01N 35/1002 20130101; G01N 35/1079 20130101 |
International
Class: |
B01L 3/00 20060101
B01L003/00 |
Claims
1. A device for automated analysis of one or more samples, wherein
the process of automated analysis comprises automated flow, wherein
the samples comprise liquid or particles in a sample vessel, and
wherein the device comprises an assembly of components that enable
processing of a sample for analytical assessment by fluidic and/or
particle based instruments.
2. The device of claim 1, wherein automated flow comprises systems
for moving samples including vacuum systems, pressure-based
systems, pneumatic systems, pumps, peristaltic pumps, diaphragms,
or syringes.
3. The device of claim 1, wherein the samples comprise polymer,
metal, glass, or alloy based particles, biological cells, plant
cells (algal cells or others), prokaryotic cells (bacteria),
eukaryotic cells, yeast, fungus, mold cells, red blood cells,
neurons, egg cell (ovum), spermatozoa, white blood cells,
basophils, neutrophils, eosinophils, monocytes, lymphocytes,
macrophages, platelets, vesicles, exosomes, stromal cells,
multicellular constructs such as spheroids, mesenchymal cells, and
induced pluripotent stem cells (iPSCs) as well as subcellular
components including nuclei, mitochondria, or chloroplasts.
4. The device of claim 1, wherein the analytical assessment by
fluidic and/or particle based instruments comprises measuring
optical force, laser force cytology, automated microscopy,
capillary electrophoresis, single cell droplet microfluidics,
single cell genomics, sequencing devices, mass spectrometry, and
nucleic acid or protein analysis, amplification, or
modification.
5. The device of claim 1, wherein the assembly of components
comprise motors in X, Y, and Z dimensions, limited switches,
microfluidic tubing, well plate block, electronic pressure
controllers, pneumatic or fluidic mixing devices with or without
temperature control, components for fluid handling, sampling
vessels with or without temperature control, mechanical components
for translating sampling vessels or other system components.
6. The device of claim 1, wherein the sample is present in single
well, single vial, or multi-well plate.
7. The device of claim 1, wherein processing of a sample comprises
activities selected from the group consisting of: selecting a flow
rate for the liquid or particles to be delivered to a fluidic
and/or particle based instrument, mixing the contents of a sample,
incubating the sample, heating the sample, cooling the sample,
sterilizing the sample, creating a seal against a vial or
well-plate containing a sample, adding reagents such as
biochemicals or other biological components such as cells to the
sample for a defined period.
8. The device of claim 1, wherein the device further comprises a
component that penetrates a seal to access the sample headspace and
liquid.
9. The device of claim 5, wherein the components for fluid handling
comprise: an outer tube that fits within a sample vessel, one or
more discrete inner tubes that fit within the diameter of the outer
tube, a connection to one or more destination vessels that are
fluidically connected to the sampling vessel, one or more separate
systems for moving fluid in or out of the sampling vessel in a
controlled manner.
10. The device of claim 9, wherein a valve is used to
preferentially drive fluid into one or more of the inner tubes or
prevent fluid from entering one or more of the inner tubes
11. The device of claim 9, wherein the system for moving fluid is a
vacuum system, a pressure-based system, or a pump such as a
peristaltic, diaphragm, syringe, or other type.
12. The device of claim 9, wherein the inner tube(s) is (are)
connected to the outer tube in a reversible manner using a
connector such as a fitting, sheath, ferrule, or other housing, or
in a permanent manner, through the use of glue, epoxy, cement or
other adhesive.
13. The device of claim 9, wherein the inner tubes are connected to
one or more reservoirs of fluids that can be delivered to the
sampling vessel or other vessels within the system.
14. The device of claim 9, wherein the fluids delivered are used to
detach adherent cells growing in the sample device.
15. The device of claim 9, further comprising a mechanism for
monitoring flow, such as a flow meter.
16. The device of claim 15, wherein the flow meter is used to
calculate the amount of fluid removed from or delivered into the
sample vessel or any other vessel or container connected to the
system.
17. The device of claim 7, wherein the activity of sterilizing the
sample, comprises creating a sterile field within a sampling device
comprising one or more light sources capable of sterilizing surface
through the generation of ultraviolet light.
18. A method for automated analysis of one or more samples using a
device and implementing the steps of: moving the samples using
automated flow, wherein the samples comprise liquid or particles in
a sample vessel, and wherein the device comprises an assembly of
components that enable processing of a sample for analytical
assessment by fluidic and/or particle based instruments.
19. The method of claim 18, wherein automated flow comprises
systems for moving samples including vacuum systems, pressure-based
systems, pneumatic systems, pumps, peristaltic pumps, diaphragms,
or syringes.
20. The method of claim 18, wherein the assembly of components
comprise motors in X, Y, and Z dimensions, limited switches,
microfluidic tubing, well plate block, electronic pressure
controllers, pneumatic or fluidic mixing devices with or without
temperature control, components for fluid handling, sampling
vessels with or without temperature control, mechanical components
for translating sampling vessels or other system components.
21. The method of claim 21, wherein the components for fluid
handling comprise: an outer tube that fits within a sample vessel,
one or more discrete inner tubes that fit within the diameter of
the outer tube, a connection to one or more destination vessels
that are fluidically connected to the sampling vessel, one or more
separate systems for moving fluid in or out of the sampling vessel
in a controlled manner.
22. The method of claim 18, wherein processing of a sample
comprises activities selected from the group consisting of:
selecting a flow rate for the liquid or particles to be delivered
to a fluidic and/or particle based instrument, mixing the contents
of a sample, incubating the sample, heating the sample, cooling the
sample, sterilizing the sample, creating a seal against a vial or
well-plate containing a sample, adding reagents such as
biochemicals or other biological components such as cells to the
sample for a defined period.
Description
FIELD OF THE INVENTION
[0001] Embodiments of the present disclosure relate to devices and
methods of using the same that enable automated
nano/micro/millifluidic sampling from one or more containers. The
containers may comprise vessels ranging from one well or vial, to
multiple multi-well plates. The devices provided herein are further
capable of mixing the contents of individual wells, creating a
sterile-field for biological investigation, and controlling
parameters such as temperature, carbon dioxide concentration, and
other cell growth conditions for material stability and monitoring
of cell-based processes.
DESCRIPTION OF THE RELATED ART
[0002] The increased use of automated systems for sample storage,
handling, and analysis has led to extensive research in the field
of automation. Current sampling systems consist of robotic arms
capable of moving a sample from a storage to loading zone for
sampling, magnetic or mechanical stir members capable of keeping
samples in suspension, and heated or cooled zones capable of
regulating sample storage or analysis temperatures.
[0003] Prior art includes several automated sampling apparatuses
encompassing various fields of analytical research (e.g.; Patent
U.S. Pat. No. 4,713,974 for use with liquid chromatography) but are
unable to be used for biological cellular analysis using Laser
Force Cytology (LFC) due to lack of accurate and consistent
nanoliter flow rate control, adequate sample mixing, and reliable
temperature control for sample handling.
[0004] Wilhelm et al. Patent U.S. Pat. No. 4,816,730 describes the
use of an apparatus for handling and moving a plurality of objects
consisting of a robotic arm capable of vertical, horizontal, and
rotational movement with a gripper mechanism for holding samples
driven by electronically controlled stepper motors. While Schmidt
et al. Patent U.S. Pat. No. 6,872,362 further describes the use of
a powered autosampler having vial cup adapted to include a magnetic
stir bar driven by a variety of different ways of changing the
magnetic field around the vial cup. Although such prior art
describes ways to move and mix a sample, these methods are not
adequate for biological cellular analysis using LFC
instrumentation. What is needed are improved devices that enable
storage, mixing and sampling of vessels ranging from a single well
to multiple multi-well plates while maintaining biological cellular
integrity by adequate mixing and temperature maintenance through
the use of pneumatic based non-contact mixing and a
temperature-controlled single-well or multi-well plate blocks.
[0005] Automatic well plate stacking or retrieval systems that have
robotic mechanisms are available that enable sequential stacking or
retrieval vertically or horizontally (CN204136215U,
US20040206419A1), utilize cassettes for loading and unloading (U.S.
Pat. No. 9,744,535) or that describe whole-lot simultaneous
stacking or retrieval of plates into a magazine or tower rack (U.S.
Pat. No. 6,086,319). Further, previous designs enable the well
plates to be loaded or removed from a storage tower in a random
(non-sequential) manner irrespective of the order in which they are
stacked (U.S. Pat. No. 7,670,555). What is needed however is the
ability to achieve specific and automated detection, selection and
stacking or retrieval of a desired well plate into or from a
storage tower in a non-sequential manner utilizing magnetic
interfaces and enabling well plate incubation which can be used in
conjunction with multiplex analysis methods for automated sampling
of such well plates.
SUMMARY OF THE INVENTION
[0006] Embodiments of the present disclosure relate to devices and
methods of using the same that enable automated (and optionally
incubated) nano/micro/millifluidic sampling from vessels ranging
from one well or vial, to multiple multi-well plates. The devices
are further capable of mixing the contents of individual wells,
creating a sterile-field for biological investigation, and
controlling temperature, carbon dioxide concentration, and other
cell growth conditions for material stability and monitoring of
cell-based processes.
[0007] More specifically, the novel devices described herein
accomplish fluidic monitoring, including but not limited to,
determining milli/micro/nanofluidic flow rates as well as
de-bubbling, through the use of electronic pressure controllers
and/or regulators used in concert with a flow meter. The novel
devices further enable sample mixing by injecting small air bubbles
in to the sample well or vial or by aspirating and dispensing the
sample or air through the use of a vacuum pump coupled to an
electronic pressure controller (EPC). Additionally, the invention
has the ability to create a sterile-field around a needle and
well-plate area using means such as ultraviolet radiation to ensure
that biological material does not contaminate the instrument
housing. The device is further designed to optionally incubate
samples prior to sampling by controlling the temperature of the
samples through the use of thermoelectric cooling modules. By
reversing the current across the modules, the thermoelectric
coolers are also capable of modifying the temperature, heating or
incubating the sample as necessary. Mixing, sterilization and
temperature control can be performed in isolation, in sequence,
and/or concurrently depending on device set-up.
BRIEF DESCRIPTION OF THE DRAWINGS
[0008] FIG. 1 provides a schematic showing the outside casing of an
embodiment of the invention, the "autosampler".
[0009] FIG. 2 provides a horizonal schematic showing the inner
workings of the autosampler and needle manifold assembly.
[0010] FIG. 3 provides a top-down view illustrating the movement
stages inside the auto sampler.
[0011] FIG. 4 provides a schematic demonstrating an autosampler
interfacing with a Laser Force Cytology instrument
(Radiance.TM.)
[0012] FIG. 5 provides a schematic showing a diagram for automated
mixing. FIG. 5A provides a schematic showing an embodiment of a
microfluidic needle design. FIG. 5B provides the automated sampling
and mixing manifold detail.
[0013] FIGS. 6A-1, A-2, B, and C provide schematics demonstrating
representative ultra-violet sterile-field. FIG. 6A-1 provides a
front view, FIG. 6A-2 provides a side view, FIG. 6B provides a
system for sterile mixing and sample delivery. FIG. 6C provides the
sterile tube detail.
[0014] FIG. 7A provides a schematic of an embodiment showing an
individual well-plate incubator, and FIG. 7B shows individual wells
or vial incubator
[0015] FIG. 8 provides embodiments for carriage structures for
multiplexing.
[0016] FIG. 9A provides a schematic for a multi-plate robotic
handler, FIG. 9B provides an embodiment for a multi-plate robotic
handler showing plates attached under normal operation, and plates
detached for movement.
[0017] FIG. 10 provides a schematic demonstrating use of an
embodiment of the autosampler for cell detachment. FIG. 10(a) shows
the cells laying in the floor of a vessel/vial, FIG. 10(b) shows
the cells having been dislodged/detached from the floor of the
vessel/vial.
[0018] FIG. 11 provides a schematic demonstrating an embodiment of
a reagent delivery system.
[0019] FIG. 12 provides a schematic demonstrating an embodiment of
a cell detachment method comprising the use of a scraping
tip/adapter.
DETAILED DESCRIPTION
[0020] The present invention is described with reference to
particular embodiments having various features. It will be apparent
to those skilled in the art that various modifications and
variations can be made in the practice of the present invention
without departing from the scope or spirit of the invention. One
skilled in the art will recognize that these features may be used
singularly or in any combination based on the requirements and
specifications of a given application or design. One skilled in the
art will recognize that the systems and devices of embodiments of
the invention can be used with any of the methods of the invention
and that any methods of the invention can be performed using any of
the systems and devices of the invention. Embodiments comprising
various features may also consist of or consist essentially of
those various features. Other embodiments of the invention will be
apparent to those skilled in the art from consideration of the
specification and practice of the invention. The description of the
invention provided is merely exemplary in nature and, thus,
variations that do not depart from the essence of the invention are
intended to be within the scope of the invention.
[0021] Before explaining at least one embodiment of the invention
in detail, it is to be understood that the invention is not limited
in its application to the details of construction and the
arrangement of the components set forth in the following
description or illustrated in the drawings. The invention is
capable of other embodiments or of being practiced or carried out
in various ways. Also, it is to be understood that the phraseology
and terminology employed herein is for the purpose of description
and should not be regarded as limiting.
[0022] Unless otherwise defined, all technical and scientific terms
used herein have the same meaning as would be commonly understood
or used by one of ordinary skill in the art encompassed by this
technology and methodologies.
[0023] Texts and references mentioned herein are incorporated in
their entirety, including U.S. Provisional Patent Application Ser.
No. 62/654,335 filed on Apr. 7, 2018.
[0024] Provided herein are novel devices for automating the
analysis of samples, wherein the samples are present in vials,
vessels, wells, multi-well plates and the like; also provided are
methods for using such devices. The devices may be referred to
herein as an "autosampler". In certain embodiments, the autosampler
may be used for obtaining samples of a desired and/or predetermined
volume for analysis by a machine, or by hand. For example, the
autosampler may be used for retrieving nano/micro/millifluidic
samples from a multi-well plate, vials or other vessels, such
samples can be of various volumes and consist of various cells or
particles. The autosampler then presents the sample in an
appropriate medium/configuration/vessel for analysis by fluidic
based instruments or systems for liquid, particulates, or cells,
such as for example, instruments that use Laser Force Cytology
(LFC).
[0025] Referring to the Figures, FIG. 1 provides a schematic
overview of an embodiment of the outside of the autosampler device
(110) where single or multiple multi-well plates or vials can be
loaded onto a plate block (216 see FIG. 2) when the bifurcated door
(120) opens. In alternate embodiments, the door, may remain open or
consist of a single retractable or collapsible door or other
opening design permutations. 140 is an ingress and egress point for
sample fluidics to move from 110 to 410 or other LFC or
optics-based technology.
[0026] As illustrated in FIGS. 2-3, in an embodiment, 120 of FIG. 1
opens utilizing two motors (200) driven by a controller board (for
opening and closing the autosampler door). The motors turn a ring
gear (210) that engages a toothed door rack (212) in order to slide
open the doors in low friction channels (214). The samples are
loaded into a well-plate that fits on a temperature-controlled
block (216) that may be heated or cooled as needed.
[0027] The needle and needle manifold assembly (226) are comprised
of a suitable material such as a flexible polymer, plastic,
silicone, carbon, or metal base (any alternative material for
purpose will work) that holds the needle (298) and pneumatic
connection (294), a sealing surface to seal vials or well plates
(230) and a spring-loaded support structure (232) to facilitate
better sealing. The needle may be composed of a multi-tube design
wherein a dedicated sample and mix tube are housed within the outer
structure of the larger diameter needle. In certain embodiments the
needle may comprise additional modifications such as a sharp end
for piercing plate seals.
[0028] In certain embodiments, travel rails (228) are positioned to
enable movement of the inner workings along X- and Y-axis and cable
carriers (296) are fitted to ensure cables can move safely when in
motion. 296 not pictured for X-axis. An additional motor or set of
motors (295) enables motion in the Z-dimension by turning the lead
screw which in turn moves the block (216).
[0029] In certain embodiments, temperature control of 216 may be
achieved using a thermoelectric cooling (TEC) module and a
thermistor connected to a temperature control board (310 (see FIG.
3)). The temperature control can include heating or cooling of the
sample. Fans (218) run constantly or as needed to remove heat from
the heat sinks (220). 216 and subsequent components are coupled to
moving platforms where 216 can be transported within the confines
of the autosampler on the X, Y, and Z axis. The motion is
controlled by a combination of an industrial computer (320) and
motors (340). For X and Y travel the industrial computer-controlled
340 turn a timing pulley (360), which drives a belt to move the
gantry plate along its Y- (380) and X- (382) axis. For Z travel the
industrial computer driven 340 both contain lead screws (222). 222
are used to generate up and downward Z-axis motion through the use
of Delrin travel nuts (224). Any travel nuts for purpose can be
utilized. The motion control in any axis may or may not have
positional feedback.
[0030] FIG. 4 illustrates the interface between 110 and the
Radiance.TM. instrument (410) which is an available embodiment for
application of 110. 110 could, in the alternative, be modified for
application to any LFC, optical force, microfluidic, or other
instrumentation. In an embodiment, the interface between 110 and
the other instrumentation is as shown in FIG. 4 and allows for
transfer between the two instruments, including but not limited to
fluids, samples, and electronic signals, communication, or other
information.
[0031] FIG. 5 Illustrates an embodiment of the automated sampling
and mixing system. To facilitate sample integrity while mixing, the
Z-distance (550) between the bottom of the sampling tubing (530)
and the bottom of the sampling vessel (as shown a multi-well plate)
can be adjusted to fine-tune the pneumatic mixing system on a
per-sample basis. Sampling is accomplished by physically moving or
pressing the vial or well plate (700) against the needle manifold
assembly (226). The sealing surface or gasket (230) is used to
create a seal between needle manifold assembly and the wellplate
(700) or vial. The flow rate into or out of the vial or sampling
well can then be adjusted by controlling the pressure in the
headspace (560) of the vial or sampling well. This is enabled by
the inner chamber (570) as shown in detail in FIG. 5B. As shown in
the Side View in 5B, the inner chamber (570) is open at two
locations on the top and one on the bottom. The two top locations
are where the manifold connects in an air tight manner to the outer
tube (540) and a fitting (580), respectively. The bottom location
is an additional open location connected to the inner chamber on
the bottom of the manifold (226), shown in the Manifold bottom
detail. The outer tube (540) passes through the inner chamber
(570), protruding through and extending out from the manifold (226)
as shown. This allows the outer tube (540) to be submerged in the
sample during sampling. However, the outer diameter of the outer
tube (540) is smaller than the diameter of the inner chamber (570),
enabling an air tight seal to be made when the well plate or vial
is pressed against the sealing surface (230). There is tubing (590)
that attaches to the top of the manifold (226) via the fitting
(580) in an air tight manner. The tubing (590) is connected to an
electronic pressure controller or some alternative pressure or
vacuum source (595) as shown. By adjusting the pressure of the
source (595) the pressure in the head space 560 can then precisely
controlled. Note that this is one particular embodiment and other
embodiments could have a larger number of openings in the manifold
as needed. Mixing and sampling both use separate tubes (500 and 530
respectively) that share a larger outer tube or needle (540). The
inner tubes (500 and 530) may consist of different or identical
diameters to improve or modify mixing or sample delivery as needed.
The material of the inner and outer tubes can be different and may
consist of metal, plastic, ceramic, composite, glass/capillary,
carbon fiber, composite, or other suitable materials. The inner
tubes may be connected to the outer tube with a variety of
connectors. These connectors between the inner and outer tubes
could be reusable, such as a fitting, sheath or other housing, or
permanent, such as glue or epoxy. The tubes may also be constructed
out of a single material or multiple materials using 3D printing or
other manufacturing techniques. An example design is shown in FIG.
5A. In an embodiment, a vacuum-enabled electronic pressure
controller (EPC) (520) is connected to tubing that may be connected
directly to a manifold (510) that contains a vacuum trap (512) that
serves to prevent liquid from entering 514 and 520. The manifold
510 and vacuum trap 512 connect to form an air tight seal, allowing
for a pneumatic connection between the tubing 514 and tubing 505.
Tubing 505 connects to a valve such that the vacuum source can be
isolated from the 0tubing 500 on the other side of the valve and
the sample contained in the well plate 700 or sample vial. The
valve could be, but is not limited to, a solenoid valve, pinch
valve, rotary valve, or ball valve. Tubing connects on both sides
of the valve creating an air and liquid tight seal.
[0032] In order to mix the contents of a sample, a vacuum-enabled
EPC (520) first applies a negative pressure to a length of tubing
(514). At a similar time (earlier, simultaneously, or later), the
valve 516 is opened to allow the negative pressure to propagate
through 512, 505, 516, and 500, enabling liquid to be withdrawn
from the sample vessel into mix tubing. After a set period of time,
the EPC switches from a vacuum regime (PEPC<Patmo spheric) to a
positive pressure regime (PEPC>Patmo spheric) in order to
reverse the flow of liquid and dispense it back into the sample
well. This cycle may be conducted one or multiple times to properly
mix the sample. Once a sample is thoroughly mixed the sample is
withdrawn by the LFC or other instrumentation 140. The samples can
be taken by utilizing a headspace pressure-based sampling method or
by vacuum within the instrument.
[0033] FIG. 6A illustrates a method for creating a sterile-field
within 110, or other autosampler systems, by utilizing an
ultra-violet (UV) germicidal lamp, light-emitting diode (LED) or
other light source (610), at a desired power and distance, fitted
in single, double, or other spacing variation, and placed at the
rear, front, side, top or bottom of the space to be sterilized and
attached or affixed to or near reflective shielding. The front view
of one embodiment is shown in FIG. 6A-1 and the top and side views
are shown in FIG. 6A-2. The field to be sterilized can be contained
by continuous or targeted placement of polished aluminum, or any
other sufficiently reflective material (620). This shielding also
serves the purpose of protecting internal cabling and other
components from repeated UV exposure while the field to be
sterilized is sufficiently exposed to the UV light. The shielding
may also be in the form of a mirror, lens, or other optical element
640 designed to focus and/or reflect the UV light to a specific
location. The UV source 610 may be mounted to a static component of
the autosampler 110 or can be mounted to the same plate as the well
plate 700 or other location to allow for motion of the UV source
relative to the needle assembly 226. In addition, the well plate
700 may be moved along the Z axis to provide a favorable position
for sterilization. A UV source might also be incorporated directly
into the well plate block 216 to sterilize the needle assembly 226.
The well plate block would be moved into position below the needle
assembly such that the UV source contained within the block would
sterilize the needle assembly. Additional structures or support
elements 630 could be integrated to help position the UV source.
The power and time required for sterilization is determined by
calculating the energy needed to achieve the kill factor for the
target to be eliminated.
[0034] FIG. 6B System for sterile mixing and sample delivery. In
order to maintain sterility of the sample during movement from an
incubator, biological safety cabinet, laminar flow hood or other
device to the autosampler 110, the well plate may be covered with
an air tight seal 632. This seal may be made of rubber, polymer,
silicon, Viton.TM. plastic, or any other suitable material. Once
inside the incubator, the sample remains sealed during movement as
the needle assembly 226 is positioned above the well plate. During
sampling and mixing, the plate is moved vertically in the Z
dimension such that the needle assembly pierces the seal 632 of the
plate to access the sample (Sampling Position). Further detail of
an embodiment is shown in FIG. 6C. As seen in a cross-sectional
view, the outer tube 650 contains 3 interior tubes for mixing
(680), sample delivery (670) and pressure modulation (660). The
outer tube may be blunt at the bottom, cut at an angle as shown, or
otherwise constructed to allow for easy penetration of the seal
632. The interior tubes may consist of different or identical
diameters to improve or modify mixing, sample delivery, or pressure
modulation as needed. The material of the inner and outer tubes can
be different and may consist of metal, plastic, ceramic, composite,
glass/capillary, or other materials. The inner tubes may be
connected to the outer tube with a variety of connectors. These
connectors could be reusable, such as a fitting, sheath or other
housing, or permanent, such as glue or epoxy. This connection
between the interior and exterior tubes creates an air tight seal
as indicated by 655. The pressure modulation tube (660) is
connected to an electronic pressure controller that can modulate
the pressure of the air in the tube. There is also a hole or notch
(657) above the bottom of the tube that allows air and pressure
changes to pass between the interior and exterior of the outer
tube. In the sampling position (sampling position is when the
bottom of the needle is submerged below the liquid and the air
tight seal has been pierced), the needle assembly pierces the seal
632 such that the mixing tube 680 and sample delivery tube 670 are
submerged, but the notch 657 is above the surface of the liquid and
below the seal. This creates an enclosed volume 675, the pressure
of which can be controlled by the EPC connected to the pressure
modulation tube 660. This allows for sample to be pushed up into
the sampling tube 670.
[0035] The ability to continuously incubate a single plate under
ideal culture conditions requires the incorporation of a
self-contained incubation chamber which can reside as shown in FIG.
7A at 110 for the duration of the desired sampling time. The design
may be adapted for multiple well plates of various sizes where the
X- and Y-axis are able to accommodate movement of the plates around
226. Attached to the top of the well plate (700) would be an
incubation chamber (720) that could be made of plastic, plexiglass,
glass, or other suitable material. The top of the chamber would
have a seal (710) that could be pierced by the sampling needle but
remain air tight. The chamber may also have a seal around the
bottom edges (715) to create a seal along the edge of the well
plate. In an alternate embodiment, the well plate 700 and
incubation chamber may be combined into one monolithic piece that
would still contain the top seal 710 but would not require the
bottom seal 715. This would create a headspace 725 that could be
controlled to create the proper conditions for cell growth.
Temperature control of the chambers is enabled by modulating the
temperature of 216, whereas CO2 is pumped into the chamber via a
tubing or hose (730) that fits into 720 and is adapted with a
commercially available HEPA filter (740) to maintain sterility. CO2
and O2 could be provided from a source such as a compressed gas
cylinder 750. The system could be fitted with additional sensing
nodes to monitor pH, dissolved gases (O2, CO2, etc.) metabolites,
or any other detectable requirement. Cells would grow in the
chambers and be periodically sampled by piercing the top seal with
the needle assembly. Cells could be transferred from the sampling
well by increasing the overall pressure of the headspace, using a
vacuum-based system to sip cells from the well, or some alternate
means.
[0036] Mixing of the sample contents to enable suspension cell
growth (or any other goal) may be achieved by mechanical, magnetic,
pneumatic, fluidic, or other means. Specific examples include but
are not limited to magnetic beds in each well or vial, a magnetic
stir bar or impeller actuated from below, above, or the side.
[0037] In an alternate embodiment, as shown in FIG. 7B, the wells
may be replaced by discrete vessels, each with their own individual
chamber 720 as shown. Gases would still be supplied and temperature
would be controlled to achieve the ideal conditions for cell
growth. Cells could be sampled in an identical fashion to what is
described above.
[0038] In order to create a multiplexed system where multiple
plates can be sampled automatically, one or more carriage systems
are enabled to support a base plate in either a circular (800) or
square/rectangle for X- Y-array (820) as shown in FIG. 8. The
multiplexed array may contain multiple self-incubated chambers or
incorporate a larger incubation chamber into which all the samples
are adjoined in parallel or series. A round 720 and 710 are enabled
to incorporate 800. A pivot rod (810) attached to 216 would enable
circular rotation of the well plates when moved via mechanical
power. These multiple trays could move in the X, Y, and Z axes in
order to access the sampling needle.
[0039] FIG. 9A illustrates a multi-plate storage tower (900) that
is divided by fixed levels and can be used in conjunction with a
robotic handler. The robotic arm can be programmed to retrieve
plates at any space in the tower (e.g.; Position 1-8 in the Figure,
where the number of trays can be increased or decreased according
to design demand). This system may be integrated as part of the
autosampler, sit directly below it, or be located adjacent to it.
The robotic arm could use any number of methods for removing any of
the plates, such as mechanical, magnetic (including
electromagnets), electronic, or other means. The individual well
plates used in this system may be designed in such a way to work in
concert with the robotic system. In one embodiment for example,
shown in FIG. 9B, the plates have magnets on two adjacent sides.
During normal operation, the magnets 910 help to hold the plates in
place. To move the plates, the robotic arm 920 provides sufficient
force to break the magnetic bond holding the plate in the rack,
removing the plate as shown. It can then be taken to the
autosampler or other device for sampling. In one embodiment, the
cells could also be returned to the tower after sampling. In order
to accommodate cells that grow in an adherent fashion, the
autosampler will be equipped with the ability to detach cells from
the surface of their growth substrate. Several embodiments are
shown in FIG. 10 for this cell detachment method. The system may be
comprised of some or all of the following components. Liquids can
be removed or added from the well using dedicated tubing or
removable tips. Once cells have been treated with reagent such as
trypsin, TrypLE.TM., Accutase.TM., or other cell detachment
reagent, either physical scraping with a soft plastic scraper, thin
metal blade, or plastic blade attached to the tip, can be used to
fully remove and suspend the cells. Alternatively, a stream of
liquid can be used to suspend them, making them available for
analysis including the mixing system described above could supply
the needed flow stream to remove and resuspend cells. Liquid could
be removed by the mixing system (FIG. 5) and then new fluid added
(fresh PBS) from reagent addition system (FIG. 10) to resuspend the
cells and wash away debris. Temperature control of the well plate
block 216 could also be used to help detach or resuspend cells.
Reagents that could be added include PBS or other buffers, trypsin
or other cell detachment solutions, media, fixative, sample (such
as cells or media), EDTA, or any other fluid of interest. FIG. 11
shows a reagent delivery system. This is accomplished using either
electronic pressure controllers to pressurize the headspace above
the liquid reagents to be dispensed into the sample containing
vials. Alternatively, a peristaltic, syringe or other pump could be
used to drive flow of the reagents to the sample vial or holder. A
physical cell detachment method is shown in FIG. 12 which would be
located at a different location within the autosampler. Once
samples were ready for analysis, the vial or well plate would be
shuttled over to the scraper shown in FIG. 12. Either physical
scraping achieved by moving the well plate or vial block in 3
dimensions with respect to a fixed soft plastic, rubber, or polymer
scraper, thin metal blade, plastic blade attached to the tip can be
used to fully remove and suspend the cells.
[0040] In an embodiment, provided herein are devices for automated
analysis of one or more samples, wherein the process of automated
analysis comprises automated flow, wherein the samples comprise
liquid or particles in a sample vessel, and wherein the devices
comprise an assembly of components that enable processing of a
sample (or samples) for analytical assessment by fluidic and/or
particle based instruments. The devices may be referred to as
autosamplers. Also provided are methods for using such devices.
[0041] The automated flow in the devices may comprise systems for
moving samples including vacuum systems, pressure-based systems,
pneumatic systems, pumps, peristaltic pumps, diaphragms, or
syringes. In an embodiment, the automated flow, such as pneumatic
flow, may be customized based on analytical parameters including,
but not limited to, the nature of the sample being analyzed, the
number of samples being analyzed and/or type of fluidic and/or
particle based instruments being used for conducting analytical
assessment. In an embodiment, the flow rate of samples from source
to delivery, i.e. where the delivery may be to a device,
instrument, or an optical force-based instrument such as
Radiance.TM., the flow rate may range from 0.01 to 50
.quadrature.L/min. In alternate embodiments, the flow rates may
range from 0.1 to 100 .quadrature.L/min, 0.5 to 500
.quadrature.L/min, or 2 to 2000 .quadrature.L/min. The flow rate of
the samples, may be uniquely customized and adjusted for optimal
efficiency and consistency and coordinated with reader instruments
to facilitate rapid and accurate analytical assessment.
[0042] In an embodiment, the samples analyzed by the autosampler
device described herein may include, but are not limited to,
polymer, metal, glass, or alloy based particles, biological cells,
plant cells (algal cells or others), prokaryotic cells (bacteria),
eukaryotic cells, yeast, fungus, mold cells, red blood cells,
neurons, egg cell (ovum), spermatozoa, white blood cells,
basophils, neutrophils, eosinophils, monocytes, lymphocytes,
macrophages, platelets, vesicles, exosomes, stromal cells,
multicellular constructs such as spheroids, mesenchymal cells, and
induced pluripotent stem cells (iPSCs) as well as subcellular
components including nuclei, mitochondria, or chloroplasts. The
samples may be synthetically manufactured or obtained from natural
sources. The samples may be obtained from bodily fluids or bodily
matter, including but not limited to, tears, saliva, sputum, blood,
plasma, lymph, urine, sweat, pus, nasal discharge or sperm.
[0043] In an embodiment the analytical assessment by fluidic and/or
particle based instruments includes, but is not limited to,
measuring optical force, laser force cytology, automated
microscopy, capillary electrophoresis, single cell droplet
microfluidics, single cell genomics, sequencing devices, mass
spectrometry, and nucleic acid or protein analysis, amplification,
or modification.
[0044] In an embodiment the assembly of components may comprise,
but are not limited to, motors in X, Y, and Z dimensions, limited
switches, microfluidic tubing, well plate blocks, electronic
pressure controllers controlling the headspace pressure over a
fluid in order to achieve flow; pneumatic or fluidic mixing devices
with or without temperature control, components for fluid handling,
sampling vessels with or without temperature control, mechanical
components for translating sampling vessels or other system
components. In certain embodiments, the sample (or samples) may be
present in single well, single vial, or multi-well plate. The
assembly of components, such as the sampling tubes and or well
plates may be sterilized. In certain embodiments, the device
further comprises a component that penetrates a seal to access the
sample headspace and liquid.
[0045] In an embodiment, processing of a sample (or samples)
comprises activities selected from the group consisting of:
selecting a flow rate for the liquid or particles to be delivered
to a fluidic and/or particle based instrument, mixing the contents
of a sample, incubating the sample, heating the sample, cooling the
sample, sterilizing the sample, creating a seal against a vial or
well-plate containing a sample, adding reagents such as
biochemicals or other biological components such as cells to the
sample for a defined period.
[0046] In certain embodiments, the components for fluid handling in
the device comprise an outer tube that fits within a sample vessel,
one or more discrete inner tubes that fit within the diameter of
the outer tube, a connection to one or more destination vessels
that are fluidically connected to the sampling vessel, one or more
separate systems for moving fluid in or out of the sampling vessel
in a controlled manner. In some embodiments, a valve may be used to
preferentially drive fluid into one or more of the inner tubes or
prevent fluid from entering one or more of the inner tubes, and
systems for moving fluid may comprise a vacuum system, a
pressure-based system, or a pump such as a peristaltic, diaphragm,
syringe, or other. In certain embodiments, the fluid handling
device sits within a manifold that creates an air tight seal
against the sampling vessel or compartment thereof. The outer tube
may be constructed of metal, plastic, ceramic, composite,
glass/capillary, or other materials; the tube(s) may be constructed
of metal, plastic, ceramic, composite, glass/capillary, or other
materials. In some embodiments, the inner tube(s) is (are)
connected to the outer tube in a reversible manner using a
connector such as a fitting, sheath, ferrule, or other housing, or
in a permanent manner, through the use of glue, epoxy, cement or
other adhesive. In some embodiments, the outer tube and inner are
manufactured as a single piece of one or more material types
through the use of additive manufacturing techniques including 3D
printing, such as stereolithography, digital light processing,
fused deposition modeling, selective laser sintering, selective
laser melting, electron beam melting, laminated object
manufacturing, binder jetting, material jetting, or other
techniques. Furthermore, the outer tube and inner may be
manufactured from glass using laser patterning and an hydrofluoric
acid (HF) or potassium hydroxide (KOH) etching and bonding process.
In additional embodiments, the inner tubes of the device are
connected to one or more reservoirs of fluids that can be delivered
to the sampling vessel or other vessels within the system. The
fluids may be delivered to detach adherent cells growing in the
sample device. The sample vessels comprise may comprise a vial or a
well plate comprising 6, 12, 24, 48, 96, 192, 288, 384, 1536 or any
custom number of wells.
[0047] In an embodiment, the outer tube is capable of mechanically
scraping cells off the bottom surface of the sample vessel (see for
example FIG. 12). For example, the outer tube may have a wedge,
wafer, tongue, or other shaped attachment made of hard or soft
plastic, metal, ceramic and may be capable of mechanically scraping
cells off the bottom surface of the sample vessel.
[0048] In an embodiment, the inner tube is connected to a reservoir
with a maximum pressure sufficiently high to push bubbles out of
the system tubing into one or more vessels or fluidic
reservoirs.
[0049] In an embodiment, the pneumatic pressure utilized by the
autosampler of the invention may be adjusted according to the
user's needs: for example, in certain embodiments the pressure may
be 0-200 psig, 0-150 psig, 1-100 psig, 1-50 psig, or 50 psig. In
certain embodiments, the flow through one of more of inner tubes is
monitored using a flow meter.
[0050] In an embodiment, the device further comprises a mechanism
for monitoring flow, such as a flow meter. The flow meter may be
used to calculate the amount of fluid removed from or delivered
into the sample vessel or any other vessel or container connected
to the system.
[0051] In an embodiment, the activity of sterilizing the sample,
comprises creating a sterile field within a sampling device
comprising one or more light sources capable of sterilizing surface
through the generation of ultraviolet light. The light source may
be an ultra-violet (UV) germicidal lamp, UV-A, UV-B, UV-C, a
light-emitting diode (LED), a laser,or other light source of
ultraviolet or other broad or narrow wavelengths. In an embodiment,
the device further comprises structures or surfaces to contain,
direct, or reflect the light to one or more specific areas or
surfaces. The light source may be mounted to a static component in
the sampling device or the light source may be mounted to a moving
component within the sampling device.
[0052] In certain embodiments, the seal against a vial or
well-plate containing a sample comprises an air tight seal made of
rubber, polymer, silicon, Viton.TM., plastic, or any other suitable
material. The outer tube of the fluid handling device may be
capable of piercing an air tight seal. The outer tube that makes
contact with the seal may be blunt, cut at an angle, or otherwise
constructed to allow for easy penetration of the seal. In an
embodiment, the seal is constructed in such a way that it remains
air tight after being pierced by the outer tube of the fluid
handling device.
[0053] In an embodiment, a hole or notch may be located above the
bottom of the outer tube that sits above the surface of the liquid
and below the seal to allow air and pressure changes to pass
between the interior and exterior of the outer tube.
[0054] In an embodiment, the sample vessel or component thereof has
an air tight seal that creates a headspace above the sample fluid
and may be continuously incubated under controlled temperature,
headspace gas concentration, and sample mixing. The outer tube of
the fluid handling device may be capable of piercing the air tight
seal and the end of the outer tube that makes contact with the seal
may be blunt, cut at an angle, or otherwise constructed to allow
for easy penetration of the seal. In an embodiment, a hole or notch
may be located above the bottom of the outer tube that sits above
the surface of the liquid and below the seal to allow air and
pressure changes to pass between the interior and exterior of the
outer tube. The seal may be constructed in such a way that it
remains air tight after being pierced by the outer tube of the
fluid handling device.
[0055] In an embodiment, the gas pumped into the head space may be
sterile as a result of filtration or other suitable means (FIGS. 7A
& B).
[0056] In an embodiment, sensors are are implemented to measure the
temperature, pH, gas concentration, or other parameters of the
headspace or sample volume.
[0057] In an embodiment, suspension cells may be grown in one or
more sample vessels.
[0058] In an embodiment, adherent cells may be grown in one or more
sample vessels attached to microcarriers, fiber-based membranes,
discs, or other structures, or other suitable growth substrate that
can be mixed or perfused with medium.
[0059] In an embodiment, cells may be mixed by mechanical,
magnetic, pneumatic, fluidic or other means.
[0060] In an embodiment, the sample vessel may be composed of
multiple discrete sub-vessels.
[0061] In an embodiment, each sub-vessel has its own headspace,
control, and sensor array.
[0062] In certain embodiments, the autosampler device of the
invention further comprises the feature of delivering one or more
reagents to a sample reservoir for mixing and subsequent
analysis.
[0063] In an embodiment multiple plates are placed or configured in
a multiplexed system and accessed by the autosampler device as
needed. The plates may be incubated, sterilized etc, as needed. In
an embodiment, the device may further be customized to accommodate
the loading of multiple distinct plates into the system in a
circular, rectangular or other format; the well plates can be
loaded into a multi-plate storage device by an automated system,
and/or the well plates may be attached to the tower via mechanical,
magnetic, electromagnetic, or other means.
* * * * *