U.S. patent application number 16/262121 was filed with the patent office on 2019-07-25 for peptidomimetic macrocycles and use thereof in regulating hif1alpha.
The applicant listed for this patent is AILERON THERAPEUTICS, INC.. Invention is credited to Carl ELKIN, Eric FEYFANT, Vincent GUERLAVAIS, Noriyuki KAWAHATA, Huw M. NASH.
Application Number | 20190225650 16/262121 |
Document ID | / |
Family ID | 51492098 |
Filed Date | 2019-07-25 |
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United States Patent
Application |
20190225650 |
Kind Code |
A1 |
GUERLAVAIS; Vincent ; et
al. |
July 25, 2019 |
PEPTIDOMIMETIC MACROCYCLES AND USE THEREOF IN REGULATING
HIF1ALPHA
Abstract
The present invention provides peptidomimetic macrocycles
capable of regulating HIF1.alpha. and methods of using such
macrocycles for the treatment of diseases.
Inventors: |
GUERLAVAIS; Vincent;
(Arlington, MA) ; KAWAHATA; Noriyuki; (West
Roxbury, MA) ; NASH; Huw M.; (Lexington, MA) ;
ELKIN; Carl; (Arlington, MA) ; FEYFANT; Eric;
(Lexington, MA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
AILERON THERAPEUTICS, INC. |
Watertown |
MA |
US |
|
|
Family ID: |
51492098 |
Appl. No.: |
16/262121 |
Filed: |
January 30, 2019 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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14843079 |
Sep 2, 2015 |
10246491 |
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16262121 |
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PCT/US2014/021292 |
Mar 6, 2014 |
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14843079 |
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61798026 |
Mar 15, 2013 |
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61776663 |
Mar 11, 2013 |
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61773769 |
Mar 6, 2013 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
A61K 38/00 20130101;
C07K 7/56 20130101; A61K 47/54 20170801 |
International
Class: |
C07K 7/56 20060101
C07K007/56; A61K 47/54 20060101 A61K047/54 |
Claims
1-132. (canceled)
133. A method of modulating Hypoxia-Inducible Factor 1-alpha
(HIF1.alpha.) activity in a cell, comprising administering to the
cell an effective amount of a peptidomimetic macrocycle having
Formula (I): ##STR00131## wherein: each A, C, D, and E is
independently an amino acid, B is an amino acid, ##STR00132##
[--NH-L.sub.3-CO--], [--NH-L.sub.3-SO.sub.2--], or [--NH-L.sub.3-],
wherein A, B, C, D, and E, taken together with the cross-linked
amino acids connected by the macrocycle-forming linker L, form the
amino acid sequence of the peptidomimetic macrocycle; each L is
independently a macrocycle-forming linker of the formula
-L.sub.1-L.sub.2- or the formula ##STR00133## each R.sub.1 and
R.sub.2 are independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkyl, cycloalkylalkyl, heteroalkyl, or heterocycloalkyl, each
of which except for --H is optionally substituted with halo; each
R.sub.3 is --H, alkyl, alkenyl, alkynyl, arylalkyl, heteroalkyl,
cycloalkyl, heterocycloalkyl, cycloalkylalkyl, cycloaryl, or
heterocycloaryl, each of which except for --H is optionally
substituted with R.sub.5; each L.sub.1, L.sub.2, and L.sub.3 is
independently alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, cycloarylene,
heterocycloarylene, or [--R.sub.4--K--R.sub.4-].sub.n, each being
optionally substituted with R.sub.5; each R.sub.4 is alkylene,
alkenylene, alkynylene, heteroalkylene, cycloalkylene,
heterocycloalkylene, arylene, or heteroarylene; each K is O, S, SO,
SO.sub.2, CO, CO.sub.2, or CONR.sub.3; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; each R.sub.7 is independently
--H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, heteroalkyl,
cycloalkylalkyl, heterocycloalkyl, cycloaryl, or heterocycloaryl,
each of which except for --H is optionally substituted with
R.sub.5, or part of a cyclic structure with a D residue; each
R.sub.8 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkyl, heteroalkyl, cycloalkylalkyl, heterocycloalkyl,
cycloaryl, or heterocycloaryl, each of which except for --H is
optionally substituted with R.sub.5, or part of a cyclic structure
with an E residue; each R.sub.9 is independently alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br, I,
##STR00134## each v and w is independently integers from 1-100; u
is an integer from 1 to 3; each x, y and z is independently
integers from 0-10; and each n is independently an integer from
1-5, wherein administering of the peptidomimetic macrocycle
modulates HIF-1.alpha. activity in the cell.
134. The method of claim 133, wherein u is 1.
135. The method of claim 133, wherein the sum of x+y+z is 2, 3, or
6.
136. The method of claim 133, wherein the sum of x+y+z is 3.
137. The method of claim 133, wherein [A]x-[B]y-[C]z comprises
Leu-Val-Ile.
138. The method of claim 133, wherein R.sub.1 and R.sub.2 are
H.
139. The method of claim 133, wherein R.sub.1 and R.sub.2 are
independently alkyl.
140. The method of claim 133, wherein R.sub.1 and R.sub.2 are
methyl.
141. The method of claim 133, wherein L.sub.1 and L.sub.2 are
independently alkylene, alkenylene, or alkynylene.
142. The method of claim 133, wherein the peptidomimetic macrocycle
is ##STR00135## or a pharmaceutically acceptable salt thereof.
143. The method of claim 133, wherein the peptidomimetic macrocycle
is ##STR00136## wherein: L' is a macrocycle-forming linker of the
formula -L.sub.1'-L.sub.2'- or the formula ##STR00137## L.sub.1'
and L.sub.2' are independently alkylene, alkenylene, alkynylene,
heteroalkylene, cycloalkylene, heterocycloalkylene, cycloarylene,
heterocycloarylene, or [--R.sub.4--K--R.sub.4-].sub.n, each being
optionally substituted with R.sub.5; R.sub.8' is --H, alkyl,
alkenyl, alkynyl, arylalkyl, cycloalkyl, heteroalkyl,
cycloalkylalkyl, heterocycloalkyl, cycloaryl, or heterocycloaryl,
each of which except for --H is optionally substituted with
R.sub.5, or part of a cyclic structure with an E residue; R.sub.9'
is alkyl, alkenyl, alkynyl, aryl, cycloalkyl, cycloalkenyl,
heteroaryl, or heterocyclyl group, unsubstituted or optionally
substituted with R.sub.a' and/or R.sub.b'; R.sub.a' and R.sub.b'
are independently alkyl, OCH.sub.3, CF.sub.3, NH.sub.2,
CH.sub.2NH.sub.2, F, Br, I, ##STR00138## and x', y', and z' are
independently integers from 0-10.
144. The method of claim 143, wherein the sum of x+y+z and the sum
of x'+y'+z' are independently 2, 3, or 6.
145. The method of claim 143, wherein the sum of x+y+z is 3, and
the sum of x'+y'+z' is 3.
146. The method of claim 143, wherein the peptidomimetic macrocycle
is ##STR00139## or a pharmaceutically acceptable salt thereof.
147. The method of claim 133, wherein the peptidomimetic macrocycle
is at least about 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLMSLVIEMALDRI.
148. The method of claim 133, wherein administering of the
peptidomimetic macrocycle inhibits HIF-1.alpha. activity in the
cell.
149. The method of claim 133, wherein administering of the
peptidomimetic macrocycle antagonizes an interaction of HIF1.alpha.
with CREB-binding protein and/or p300 in the cell.
150. The method of claim 133, wherein administering of the
peptidomimetic macrocycle reduces transcription of a gene that is
mediated by interaction of HIF1.alpha. with CREB-binding protein
and/or p300 in the cell.
151. The method of claim 133, wherein administering of the
peptidomimetic macrocycle reduces angiogenesis in the cell.
152. The method of claim 133, wherein administering of the
peptidomimetic macrocycle induces apoptosis in the cell.
Description
CROSS-REFERENCE
[0001] This application is a continuation of U.S. application Ser.
No. 14/843,079, filed Sep. 2, 2015, which is a continuation of
PCT/US14/21292, filed Mar. 6, 2014, which claims priority to U.S.
Provisional Application No. 61/798,026, filed Mar. 15, 2013, U.S.
Provisional Application No. 61/776,663, filed Mar. 11, 2013, and
U.S. Provisional Application No. 61/773,769, filed Mar. 6, 2013,
each of which applications are hereby incorporated by reference in
their entirety.
SEQUENCE LISTING
[0002] The instant application contains a Sequence Listing which
has been submitted electronically in ASCII format and is hereby
incorporated by reference in its entirety. Said ASCII copy, created
on Jan. 29, 2019, is named 35224790302_SL.txt and is 392,988 bytes
in size.
INCORPORATION BY REFERENCE
[0003] All publications, patents, and patent applications mentioned
in this specification are herein incorporated by reference to the
same extent as if each individual publication, patent, or patent
application was specifically and individually indicated to be
incorporated by reference.
BACKGROUND OF THE INVENTION
[0004] Hypoxia-inducible factors (HIFs) are transcription factors
that respond to changes in available oxygen in the cellular
environment, in specific, to decreases in oxygen, or hypoxia. Most,
if not all, oxygen-breathing species express the highly-conserved
transcriptional complex HIF-1, which is a heterodimer composed of
an alpha and a beta subunit, the latter being a
constituitively-expressed aryl hydrocarbon receptor nuclear
translocator (ARNT). HIF-1 belongs to the PER-ARNT-SIM (PAS)
subfamily of the basic-helix-loop-helix (bHLH) family of
transcription factors. The alpha subunit of HIF-1 is a target for
prolyl hydroxylation by HIF prolyl-hydroxylase, which makes
HIF1.alpha. a target for degradation by the E3 ubiquitin ligase
complex, leading to quick degradation by the proteasome. This
occurs only in normoxic conditions. In hypoxic conditions, HIF
prolyl-hydroxylase is inhibited, since it utilizes oxygen as a
cosubstrate.
[0005] HIFs facilitate both oxygen delivery and adaptation to
oxygen deprivation by regulating the expression of genes that are
involved in many cellular processes, including glucose uptake and
metabolism, angiogenesis, erythropoiesis, cell proliferation, and
apoptosis (Semenza G L. Curr Opin Cell Biol 2001; 13: 167-171).
They are members of the PAS (PER-ARNT (arylhydrocarbon receptor
nuclear translocator)-SIM) family of basic helix-loop-helix (bHLH)
transcription factors that bind to DNA as heterodimers composed of
an oxygen-sensitive a subunit and a constitutively expressed .beta.
subunit, also known as ARNT. To date, three HIFs (HIF-1, -2, and
-3) have been identified that regulate transcriptional programs in
response to low oxygen levels.
[0006] HIFs are transcription factors that mediate cellular
adaptations to oxygen deprivation. Over 100 direct HIF target genes
have been identified that regulate a number of cellular processes,
including glucose metabolism, angiogenesis, erythropoiesis,
proliferation, and invasion. HIF can also indirectly regulate
cellular processes such as proliferation and differentiation
through interactions with other signaling proteins such as C-Myc
and Notch (Rankin E B and AJ Giaccia, Cell Death and Differtiation,
15, 2008).
[0007] Chronic hypoxia is a hallmark of many tumors and is
associated with angiogenesis and more aggressive tumor phenotype.
HIFs regulate multiple steps of tumorigenesis including tumor
formation, progression, and response to therapy. There are multiple
mechanisms by which HIF can become activated and promote tumor
progression. Thus, it is apparent that downregulation of the HIF
system is an attractive target for cancer therapy.
[0008] Cited2 is a cAMP-responsive element-binding protein
(CBP)/p300 interacting transcriptional modulator, with Glu/Asp-rich
carboxy-terminal domain, 2. Cited2 has been seen as a negative
regulator of HIF1.alpha.-mediated signaling by competing with
HIF1.alpha. for binding to CBP/p300 (Freedman et al., Nat Struct
Biol. 2003 July; 10(7):504-12; Bhattacharya et al., Genes Dev. 13,
64-75, 1999).
SUMMARY OF THE INVENTION
[0009] The present invention provides pharmaceutical formulations
comprising an effective amount of peptidomimetic macrocycles or
pharmaceutically acceptable salts thereof. The peptidomimetic
macrocycles of the invention are cross-linked (e.g., stapled) and
possess improved pharmaceutical properties relative to their
corresponding uncross-linked peptidomimetic macrocycles. These
improved properties include improved bioavailability, enhanced
chemical and in vivo stability, increased potency, and reduced
immunogenicity (i.e., fewer or less severe injection site
reactions).
[0010] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is at least about 60% identical to an amino acid sequence selected
from the group consisting of the amino acid sequences in Tables 1a,
1b and 1c, further comprising at least one macrocycle-forming
linker, wherein the macrocycle-forming linker connects a first
amino acid to a second amino acid. In some embodiments, the
peptidomimetic macrocycle comprises an amino acid sequence which is
at least about 65%, 70%, 75%, 80%, 85%, 90% or 95% an amino acid
sequence identical to selected from the group consisting of the
amino acid sequences in Tables 1a, 1b and 1c. In some embodiments,
the peptidomimetic macrocycle comprises an amino acid sequence
selected from the group consisting of the amino acid sequences in
Tables 1a, 1b and 1c. In some embodiments, a macrocycle-forming
linker of the peptidomimetic macrocycle of the invention connects
one of the following pairs of amino acids: 9 and 13, 9 and 16, 10
and 14, 10 and 17, 11 and 15, 11 and 18, 12 and 16, 12 and 19, 13
and 17, 13 and 20, 14 and 18, and 15 and 19. In some embodiments,
the macrocycle-forming linker connects amino acids 10 and 14. In
some embodiments, the macrocycle-forming linker connects amino
acids 14 and 18.
[0011] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is at least about 60% identical to an amino acid sequence selected
from the group consisting of the amino acid sequences in Table 2,
further comprising at least one macrocycle-forming linker, wherein
the macrocycle-forming linker connects a first amino acid to a
second amino acid. In some embodiments, the peptidomimetic
macrocycle comprises an amino acid sequence which is at least about
65%, 70%, 75%, 80%, 85%, 90% or 95% identical to an amino acid
sequence selected from the group consisting of the amino acid
sequences in Table 2. In some embodiments, the peptidomimetic
macrocycle comprises an amino acid sequence selected from the group
consisting of the amino acid sequences in Table 2. In some
embodiments, one or more macrocycle-forming linkers of the
peptidomimetic macrocycle of the invention connect one or more of
the following pairs of amino acids: 4 and 8, 4 and 11, 5 and 9, 5
and 12, 6 and 10, 6 and 13, 7 and 11, 8 and 12, 9 and 13, 19 and
23, 19 and 26, 20 and 27, 21 and 25, 21 and 28, 23 and 27, and 41
and 45. In some embodiments, the peptidomimetic macrocycle comprise
two macrocycle-forming linkers. In some embodiments, the
macrocycle-forming linkers connect amino acids 6 and 13 and amino
acids 23 and 27. In some embodiments, the macrocycle-forming
linkers connect amino acids 8 and 12 and amino acids 19 and 26. In
some embodiments, the macrocycle-forming linkers connect amino
acids 8 and 12 and amino acids 23 and 27. In some embodiments, the
macrocycle-forming linkers connect amino acids 23 and 27 and amino
acids 41 and 45.
[0012] In some embodiments, a peptidomimetic macrocycle of the
invention comprises a helix, for example an .alpha.-helix. In some
embodiments, a peptidomimetic macrocycle of the invention comprises
an .alpha.,.alpha.-disubstituted amino acid. In some embodiments,
each amino acid connected by the macrocycle-forming linker is an
.alpha.,.alpha.-disubstituted amino acid.
[0013] In some embodiments, the present invention provides a
peptidomimetic macrocycle having Formula (I):
##STR00001##
wherein: each A, C, D, and E is independently an amino acid, B is
an amino acid,
##STR00002##
[--NH-L.sub.3-CO--], [--NH-L.sub.3-SO.sub.2--], or [--NH-L.sub.3-],
wherein A, B, C, D, and E, taken together with the cross-linked
amino acids connected by the macrocycle-forming linker L, form the
amino acid sequence of the peptidomimetic macrocycle; L is a
macrocycle-forming linker of the formula -L.sub.1-L.sub.2- or the
formula
##STR00003##
R.sub.1 and R.sub.2 are independently --H, alkyl, alkenyl, alkynyl,
arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each of which except for --H is optionally
substituted with halo; R.sub.3 is --H, alkyl, alkenyl, alkynyl,
arylalkyl, heteroalkyl, cycloalkyl, heterocycloalkyl,
cycloalkylalkyl, cycloaryl, or heterocycloaryl, each of which
except for --H is optionally substituted with R.sub.5; L.sub.1,
L.sub.2, and L.sub.3 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each R.sub.4 is alkylene, alkenylene, alkynylene,
heteroalkylene, cycloalkylene, heterocycloalkylene, arylene, or
heteroarylene; each K is O, S, SO, SO.sub.2, CO, CO.sub.2, or
CONR.sub.3; each R.sub.5 is independently halogen, alkyl,
--OR.sub.6, --N(R.sub.6).sub.2, --SR.sub.6, --SOR.sub.6,
--SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a fluorescent moiety, a
radioisotope, or a therapeutic agent; each R.sub.6 is independently
--H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkylalkyl,
heterocycloalkyl, a fluorescent moiety, a radioisotope, or a
therapeutic agent; R.sub.7 is --H, alkyl, alkenyl, alkynyl,
arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl,
heterocycloalkyl, cycloaryl, or heterocycloaryl, each of which
except for --H is optionally substituted with R.sub.5, or part of a
cyclic structure with a D residue; R.sub.8 is --H, alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl,
heterocycloalkyl, cycloaryl, or heterocycloaryl, each of which
except for --H is optionally substituted with R.sub.5, or part of a
cyclic structure with an E residue; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br,
I,
##STR00004##
v and w are independently integers from 1-100; u is an integer from
1 to 3; x, y and z are independently integers from 0-10; and n is
an integer from 1-5.
[0014] In some embodiments, u is 1.
[0015] In some embodiments, the sum of x+y+z is 2, 3 or 6, for
example 3.
[0016] In some embodiments, each of v and w is independently an
integer from 1 to 10, 1 to 15, 1 to 20, or 1 to 25, for example
from 1 to 15.
[0017] In some embodiments, L.sub.1 and L.sub.2 are independently
alkylene, alkenylene or alkynylene. In some embodiments, L.sub.1
and L.sub.2 are independently C.sub.3-C.sub.10 alkylene or
alkenylene, for example C.sub.3-C.sub.6 alkylene or alkenylene. For
example, L is
##STR00005##
[0018] In some embodiments, L is
##STR00006##
for example
##STR00007##
[0019] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0020] In some embodiments, the present invention provides a
peptidomimetic macrocycle having the formula
##STR00008##
wherein: L' is a macrocycle-forming linker of the formula
-L.sub.1'-L.sub.2'- or the formula
##STR00009##
L.sub.1' and L.sub.2' are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4--].sub.n, each being optionally substituted
with R.sub.5; R.sub.8' is --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkyl, heteroalkyl, cycloalkylalkyl, heterocycloalkyl,
cycloaryl, or heterocycloaryl, each of which except for --H is
optionally substituted with R.sub.5, or part of a cyclic structure
with an E residue; R.sub.9' is alkyl, alkenyl, alkynyl, aryl,
cycloalkyl, cycloalkenyl, heteroaryl, or heterocyclyl group,
unsubstituted or optionally substituted with R.sub.a' and/or
R.sub.b'; R.sub.a' and R.sub.b' are independently alkyl, OCH.sub.3,
CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br, I,
##STR00010##
and x', y', and z' are independently integers from 0-10.
[0021] In some embodiments, the sum of x+y+z and the sum of
x'+y'+z' are independently 2, 3 or 6, for example 3.
[0022] In some embodiments, each of v, w, v' and w' is
independently an integer from 1 to 10, 1 to 15, 1 to 20, or 1 to
25.
[0023] In some embodiments, each of v, w, v' and w' is
independently an integer from 1 to 15.
[0024] In some embodiments, L.sub.1, L.sub.2, L.sub.1', and
L.sub.2' are independently alkylene, alkenylene or alkynylene. In
some embodiments, L.sub.1, L.sub.2, L.sub.1', and L.sub.2' are
independently C.sub.3-C.sub.10 alkylene or alkenylene, for example
C.sub.3-C.sub.6 alkylene or alkenylene. In some embodiments, L and
L' are both
##STR00011##
[0025] In some embodiments, L is
##STR00012##
and L' is
##STR00013##
[0026] For example, L and L' are independently
##STR00014##
[0027] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0028] In some embodiments, a peptidomimetic macrocycle of the
invention is
##STR00015##
or a pharmaceutically acceptable salt thereof.
[0029] In some embodiments, a peptidomimetic macrocycle of the
invention comprises a macrocycle-forming linker connecting a
backbone amino group of a first amino acid to a second amino acid
within the peptidomimetic macrocycle.
[0030] In some embodiments, the present invention provides a
peptidomimetic macrocycle having Formula (II) or (IIa):
##STR00016##
wherein: each A, C, D, and E is independently an amino acid, B is
an amino acid,
##STR00017##
[--NH-L.sub.3-CO--], [--NH-L.sub.3-SO.sub.2--], or [--NH-L.sub.3-],
wherein A, B, C, D, and E, taken together with the cross-linked
amino acids connected by the macrocycle-forming linker
-L.sub.1-L.sub.2-, form the amino acid sequence of the
peptidomimetic macrocycle which is at least about 65%, 70%, 75%,
80%, 85%, 90%, 95% or is about 100% identical to an amino acid
sequence selected from the group consisting of the amino acid
sequences in Tables 1a, 1b, 1c and 2; R.sub.1 and R.sub.2 are
independently --H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl,
cycloalkylalkyl, heteroalkyl, or heterocycloalkyl, unsubstituted or
substituted with halo-, or part of a cyclic structure with an E
residue; R.sub.3 is hydrogen, alkyl, alkenyl, alkynyl, arylalkyl,
heteroalkyl, cycloalkyl, heterocycloalkyl, cycloalkylalkyl,
cycloaryl, or heterocycloaryl, optionally substituted with R.sub.5;
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each R.sub.4 is alkylene, alkenylene, alkynylene,
heteroalkylene, cycloalkylene, heterocycloalkylene, arylene, or
heteroarylene; each K is O, S, SO, SO.sub.2, CO, CO.sub.2, or
CONR.sub.3; each R.sub.5 is independently halogen, alkyl,
--OR.sub.6, --N(R.sub.6).sub.2, --SR.sub.6, --SOR.sub.6,
--SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a fluorescent moiety, a
radioisotope, or a therapeutic agent; each R.sub.6 is independently
--H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkylalkyl,
heterocycloalkyl, a fluorescent moiety, a radioisotope or a
therapeutic agent; R.sub.7 is --H, alkyl, alkenyl, alkynyl,
arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl,
heterocycloalkyl, cycloaryl, or heterocycloaryl, each of which
except for --H is optionally substituted with R.sub.5; v and w are
independently integers from 1-100; u is an integer from 1 to 3; x,
y and z are independently integers from 0-10; and n is an integer
from 1-5.
[0031] In some embodiments, u is 1.
[0032] In some embodiments, the sum of x+y+z is 2, 3 or 6, for
example 3.
[0033] In some embodiments, each of v and w is independently an
integer from 1 to 10, 1 to 15, 1 to 20, or 1 to 25, for example
from 1 to 15.
[0034] In some embodiments, L.sub.1 and L.sub.2 are independently
alkylene, alkenylene or alkynylene. In some embodiments, L.sub.1
and L.sub.2 are independently C.sub.3-C.sub.10 alkylene or
alkenylene, for example C.sub.3-C.sub.6 alkylene or alkenylene. For
example, L is
##STR00018##
[0035] In some embodiments, L is
##STR00019##
for example
##STR00020##
[0036] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0037] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence of the
formula:
X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X-
21-X22-X23-X24-X25-X26-X27-X28-X29-X30-X31-X32 (SEQ ID NO: 2)
wherein: X1 is a hydrophobic amino acid, or absent; X2 is a
hydrophobic amino acid, or absent; X3 is a negatively charged amino
acid, a positively charged amino acid, or absent; X4 is an
uncharged polar amino acid, or absent; X5 is a negatively charged
amino acid, or absent; X6 is a hydrophobic amino acid, a negatively
charged amino acid, a positively charged amino acid, an uncharged
polar amino acid, or absent; X7 is a hydrophobic amino acid, a
negatively charged amino acid, or absent; X8 is a negatively
charged amino acid, a positively charged amino acid, or absent; X9
is a negatively charged amino acid, absent, or a cross-linked amino
acid; X10 is a negatively charged amino acid, a positively charged
amino acid, an uncharged polar amino acid, or a cross-linked amino
acid; X11 is a hydrophobic amino acid, a negatively charged amino
acid, a positively charged amino acid, or a cross-linked amino
acid; X12 is a hydrophobic amino acid, a negatively charged amino
acid, or a cross-linked amino acid; X13 is a hydrophobic amino
acid, a hydrophobic amino acid, a negatively charged amino acid, or
a cross-linked amino acid; X14 is a cross-linked amino acid; X15 is
a hydrophobic amino acid, a negatively charged amino acid, or a
cross-linked amino acid; X16 is a hydrophobic amino acid, a
negatively charged amino acid, or a cross-linked amino acid; X17 is
a hydrophobic amino acid, a negatively charged amino acid, a
positively charged amino acid, or a cross-linked amino acid; X18 is
a cross-linked amino acid; X19 is a hydrophobic amino acid, a
negatively charged amino acid, a positively charged amino acid, or
a cross-linked amino acid; X20 is a negatively charged amino acid,
a hydrophobic amino acid, or a cross-linked amino acid; X21 is a
hydrophobic amino acid, or a negatively charged amino acid; X22 is
a negatively charged amino acid, or absent; X23 is a positively
charged amino acid, a negatively charged amino acid, or absent; X24
is a hydrophobic amino acid, a negatively charged amino acid, or
absent; X25 is a hydrophobic amino acid, a negatively charged amino
acid, or absent; X26 is a negatively charged amino acid, or absent;
X27 is a hydrophobic amino acid, or absent; X28 is a hydrophobic
amino acid, or absent; X29 is a negatively charged amino acid, an
uncharged polar amino acid, or absent; X30 is a hydrophobic amino
acid, or absent; X31 is a hydrophobic amino acid, or absent; and
X32 is a hydrophobic amino acid, or absent; wherein the
peptidomimetic macrocycle comprises at least one macrocycle-forming
linker connecting at least one pair of amino acids selected from
X1-X28; L is a macrocycle-forming linker of the formula
-L.sub.1-L.sub.2- or the formula
##STR00021##
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each the cross-linked amino acid is optionally
substituted at the alpha carbon position with R.sub.1 or R.sub.2,
wherein R.sub.1 and R.sub.2 are independently alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each being optionally substituted with halo-;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, or CO.sub.2; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6--N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with R.
and/or R.sub.b; and R.sub.a and R.sub.b are independently alkyl,
OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br, I,
##STR00022##
[0038] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence of the
formula:
X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X-
21-X22-X23-X24-X25-X26-X27-X28-X29-X30-X31-X32 (SEQ ID NO: 3)
wherein: X1 is Val or absent; X2 is Ile, Phe, or absent; X3 is Asp,
Arg, or absent; X4 is Thr or absent; X5 is Asp or absent; X6 is
Phe, Ala, Glu, Ser, Dpr, Asn, or absent; X7 is Ile, Ala, Glu, Ser,
or absent; X8 is Asp, Ala, Ser, Dpr, or absent; X9 is Glu, Ala,
absent, or a cross-linked amino acid; X10 is Glu, Ala, Ser, Dpr,
Gln, or a cross-linked amino acid; X11 is Val, Ala, Asp, Ser, Dpr,
or a cross-linked amino acid; X12 is Leu, Ala, Glu, Ser, pL, or a
cross-linked amino acid; X13 is Met, Nle, Ala, Asp, or a
cross-linked amino acid; X14 is Ser or a cross-linked amino acid;
X15 is Leu, Ala, Asp, Ser, or a cross-linked amino acid; X16 is
Val, Ala, Glu, Ser, pL, or a cross-linked amino acid; X17 is Ile,
Ala, Glu, Ser, Dpr, Bpa, or a cross-linked amino acid; X18 is Glu
or a cross-linked amino acid; X19 is Met, Nle, Ala, Glu, Ser, Dpr,
Bpa, or a cross-linked amino acid; X20 is Gly, Ala, Glu, Ser, or a
cross-linked amino acid;
X21 is Leu, Ala, Glu, or Ser;
[0039] X22 is Asp, Ala, Ser, or absent; X23 is Arg, Ala, Glu, Ser,
Dpr, or absent; X24 is Ile, Ala, Glu, Ser, or absent; X25 is Lys,
Glu, or absent; X26 is Glu or absent; X27 is Leu or absent; X28 is
Pro or absent; X29 is Glu, Gln, or absent; X30 is Leu or absent;
X31 is Trp or absent; and X32 is Leu or absent; wherein the
peptidomimetic macrocycle comprises at least one macrocycle-forming
linker connecting at least one pair of amino acids selected from
X1-X28; L is a macrocycle-forming linker of the formula
-L.sub.1-L.sub.2- or the formula
##STR00023##
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each the cross-linked amino acid is optionally
substituted at the alpha carbon position with R.sub.1 or R.sub.2,
wherein R.sub.1 and R.sub.2 are independently alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each being optionally substituted with halo-;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, or CO.sub.2; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; and R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br,
I,
##STR00024##
[0040] A peptidomimetic macrocycle comprising an amino acid
sequence of the formula:
X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X-
21-X22-X23-X24-X25-X26-X27-X28-X29-X30-X31-X32 (SEQ ID NO: 4)
wherein: X1 is Val or absent; X2 is Ile, Phe, or absent; X3 is Asp,
Arg, or absent; X4 is Thr or absent; X5 is Asp or absent; X6 is
Phe, Ala, Glu, Ser, Dpr, Asn, or absent; X7 is Ile, Ala, Glu, Ser,
or absent; X8 is Asp, Ala, Ser, Dpr, or absent; X9 is Glu, Ala,
absent, or a cross-linked amino acid; X10 is Glu, Ala, Ser, Dpr,
Gln, or a cross-linked amino acid; X11 is Val, Ala, Asp, Ser, Dpr,
or a cross-linked amino acid; X12 is Leu, Ala, Glu, Ser, pL, or a
cross-linked amino acid; X13 is Met, Nle, Ala, Asp, or a
cross-linked amino acid; X14 is Ser or a cross-linked amino acid;
X15 is Leu, Ala, Asp, Ser, or a cross-linked amino acid; X16 is
Val, Ala, Glu, Ser, pL, or a cross-linked amino acid; X17 is Ile,
Ala, Glu, Ser, Dpr, Bpa, or a cross-linked amino acid; X18 is Glu
or a cross-linked amino acid; X19 is Met, Nle, Ala, Glu, Ser, Dpr,
Bpa, or a cross-linked amino acid; X20 is Gly, Ala, Glu, Ser, or a
cross-linked amino acid;
X21 is Leu, Ala, Glu, or Ser;
[0041] X22 is Asp, Ala, Ser, or absent; X23 is Arg, Ala, Glu, Ser,
Dpr, or absent; X24 is Ile, Ala, Glu, Ser, or absent; X25 is Lys,
Glu, or absent; X26 is Glu or absent; X27 is Leu or absent; X28 is
Pro or absent; X29 is Glu, Gln, or absent; X30 is Leu or absent;
X31 is Trp or absent; and X32 is Leu or absent; wherein the
peptidomimetic macrocycle comprises at least one macrocycle-forming
linker connecting at least one pair of amino acids selected from
X1-X28; L is a macrocycle-forming linker of the formula
-L.sub.1-L.sub.2- or the formula
##STR00025##
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each the cross-linked amino acid is optionally
substituted at the alpha carbon position with R.sub.1 or R.sub.2,
wherein R.sub.1 and R.sub.2 are independently alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each being optionally substituted with halo-;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, or CO.sub.2; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; and R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br,
I,
##STR00026##
[0042] In some embodiments, the peptidomimetic macrocycle of the
invention comprises one macrocycle-forming linker.
[0043] In some embodiments, the macrocycle-forming linker of the
peptidomimetic macrocycle of the invention connects one of the
following pairs of amino acids: X9 and X14, X9 and X16, X10 and
X14, X10 and X17, X11 and X15, X11 and X18, X12 and X16, X12 and
X19, X13 and X17, X13 and X20, X14 and X18, and X14 and X19. In
some embodiments, the macrocycle-forming linker connects amino
acids: X10 and X14. In some embodiments, the macrocycle-forming
linker connects amino acids: X14 and X18.
[0044] In some embodiments, X9 is Glu. In some embodiments, X12 is
Leu. In some embodiments, X13 is Nle or Met. In some embodiments,
X16 is Val. In some embodiments, X18 is Glu. In some embodiments,
X19 is Nle or Met. In some embodiments, X20 is Ala. In some
embodiments, X21 is Leu. In some embodiments, X22 is Asp. In some
embodiments, X24 is Ile. In some embodiments, X30 is Leu. In some
embodiments, X31 is Trp.
[0045] In some embodiments, L.sub.1 and L.sub.2 are independently
alkylene, alkenylene or alkynylene. In some embodiments, L.sub.1
and L.sub.2 are independently C.sub.3-C.sub.10 alkylene or
alkenylene, for example C.sub.3-C.sub.6 alkylene or alkenylene. For
example, L is
##STR00027##
[0046] In some embodiments, L is
##STR00028##
for example
##STR00029##
[0047] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0048] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is about 60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLMSLVIEMALDRI (SEQ ID NO: 5), for
example an amino acid sequence of FIDEEVLM-Z-LVI-Z-MALDRI (SEQ ID
NO: 6), wherein each Z is independently a cross-linked amino acid.
In some embodiments, the peptidomimetic macrocycle is
##STR00030##
or a pharmaceutically acceptable salt thereof.
[0049] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is about 60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLNleSLVIENleALDRI (SEQ ID NO: 7), for
example an amino acid sequence of FIDEEVLNle-Z-LVI-Z-NleALDRI (SEQ
ID NO: 8), wherein each Z is independently a cross-linked amino
acid. In some embodiments, the peptidomimetic macrocycle is
##STR00031##
or a pharmaceutically acceptable salt thereof.
[0050] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is about 60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLMSLVIEMGLDRIKELPELWL (SEQ ID NO: 9),
for example an amino acid sequence of
FIDEEVLM-Z-LVI-Z-MGLDRIKELPELWL (SEQ ID NO: 10), wherein each Z is
independently a cross-linked amino acid.
[0051] In some embodiments, a peptidomimetic macrocycle of the
invention has a formula
X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X21-X22-X23-X24-X-
25-X26-X27-X28 (SEQ ID NO: 11). In some embodiments, a
macrocycle-forming linker of the peptidomimetic macrocycle of the
invention connects one of the following pairs of amino acids: X10
and X14, X10 and X17, X11 and X18, X12 and X16, X12 and X19, and
X14 and X18, for example X14 and X18. In some embodiments, X13 is
Nle. In some embodiments, X19 is Nle. In some embodiments, X20 is
Ala.
[0052] In some embodiments, a peptidomimetic macrocycle of the
invention further comprises an amino acid sequence which is about
60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an amino
acid sequence of LLQGEELLRALDQV (SEQ ID NO: 12). In some
embodiments, the peptidomimetic macrocycle comprises an amino acid
sequence of LLQGEEL-Z-RAL-Z-QV (SEQ ID NO: 13), wherein each Z is
independently a cross-linked amino acid. In some embodiments, X6 is
linked to the amino acid sequence of LLQGEEL-Z-RAL-Z-QV (SEQ ID NO:
13). In some embodiments, the peptidomimetic macrocycle comprises
an amino acid sequence of LLQGE-Z-LLRALD-Z-V (SEQ ID NO: 14),
wherein each Z is independently a cross-linked amino acid. In some
embodiments, X6 is linked to the amino acid sequence of
LLQGEEL-Z-RAL-Z-QV (SEQ ID NO: 13).
[0053] In some embodiments, a peptidomimetic macrocycle of the
invention further comprises an amino acid sequence which is about
60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an amino
acid sequence of QLTSYDCEVNA (SEQ ID NO: 15), for example an amino
acid sequence of QLT-Z-YDAbu-Z-VNA (SEQ ID NO: 16), wherein each Z
is independently a cross-linked amino acid. In some embodiments,
X28 is linked to the amino acid sequence of QLT-Z-YDAbu-Z-VNA (SEQ
ID NO: 16).
[0054] In some embodiments, the present invention provides a
pharmaceutical composition comprising a peptidomimetic macrocycle
of the invention and a pharmaceutically acceptable carrier.
[0055] In some embodiments, the present invention provides a method
of reducing transcription of a gene in a cell, wherein
transcription of the gene is mediated by interaction of
Hypoxia-Inducible Factor 1.alpha. (HIF1.alpha.) with CREB-binding
protein and/or p300, comprising contacting the cell with an
effective amount of a peptidomimetic macrocycle of the invention.
In some embodiments, the gene is selected from the group consisting
of adenylate kinase 3, aldolase A, aldolase C, enolase 1, glucose
transporter 1, glucose transporter 3, glyceraldehyde-3-phosphate
dehydrogenase, hexokinase 1, hexokinase 2, insulin-like growth
factor 2, IGF binding protein 1, IGF binding protein 3, lactate
dehydrogenase A, phosphoglycerate kinase 1, pyruvate kinase M, p21,
transforming growth factor .beta.3, ceruloplasmin, erythropoietin,
transferrin, transferrin receptor, .alpha.iB-adrenergic receptor,
adrenomedullin, endothelin-1, heme oxygenase 1, nitric oxide
synthase 2, plasminogen activator inhibitor 1, vascular endothelial
growth factor, vascular endothelial growth factor receptor FLT-1,
vascular endothelial growth factor receptor KDR/Flk-1, and
p35srg.
[0056] In some embodiments, the present invention provides a method
of treating or preventing in a subject in need thereof a disorder
mediated by interaction of HIF1.alpha. with CREB-binding protein
and/or p300, comprising administering to the subject an effective
amount of a peptidomimetic macrocycle of the invention. In some
embodiments, the disorder is selected from the group consisting of
retinal ischemia, pulmonary hypertension, intrauterine growth
retardation, diabetic retinopathy, age-related macular
degeneration, diabetic macular edema, and cancer.
[0057] In some embodiments, the present invention provides a method
of reducing or preventing angiogenesis in a tissue, comprising
contacting the tissue with an effective amount of a peptidomimetic
macrocycle of the invention. In some embodiments, the method is
carried out in vivo. In some embodiments, the tissue is a
tumor.
[0058] In some embodiments, the present invention provides a method
of inducing apoptosis in a cell, comprising contacting the cell
with an effective amount of a peptidomimetic macrocycle of the
invention.
[0059] In some embodiments, the present invention provides a method
of decreasing survival and/or proliferation of a cell, comprising
contacting the cell with an effective amount of a peptidomimetic
macrocycle of the invention. In some embodiments, the cell is
cancerous or is contained in the endothelial vasculature of a
tissue that contains cancerous cells.
[0060] In some embodiments, the present invention provides a method
of treating cancer in a subject comprising administering to the
subject an effective amount of a peptidomimetic macrocycle of the
invention.
[0061] In some embodiments, the present invention provides a method
of treating age-related macular degeneration or diabetic
retinopathy in a subject comprising administering to the subject an
effective amount of a peptidomimetic macrocycle of the
invention.
[0062] In some embodiments, the present invention provides a method
of treating a disorder caused by excessive angiogenesis in a
subject comprising administering to the subject an effective amount
of a peptidomimetic macrocycle of the invention.
[0063] In some embodiments, the present invention provides a method
of modulating the activity of HIF1.alpha. in a subject comprising
administering to the subject a peptidomimetic macrocycle of the
invention.
[0064] In some embodiments, the present invention provides a method
of antagonizing the interaction between CBP/p300 and HIF1.alpha.
proteins in a subject comprising administering to the subject an
effective amount of a peptidomimetic macrocycle of the
invention.
[0065] In some embodiments, the present invention provides a method
of identifying a potential ligand of CREB-binding protein and/or
p300, comprising: providing a peptidomimetic macrocycle of the
invention, contacting the peptidomimetic macrocycle with a test
agent, and detecting whether the test agent selectively binds to
the peptidomimetic macrocycle, wherein a test agent that
selectively binds to the peptidomimetic macrocycle is identified as
a potential ligand of CREB-binding protein and/or p300.
BRIEF DESCRIPTION OF THE DRAWINGS
[0066] The novel features of the invention are set forth with
particularity in the appended claims. A better understanding of the
features and advantages of the present invention will be obtained
by reference to the following detailed description that sets forth
illustrative embodiments, in which the principles of the invention
are utilized, and the accompanying drawings of which:
[0067] FIG. 1 is a set of bar graphs that show effects of the
peptidomimetic macrocycle SP-6 in inhibiting gene expression of
HIF1.alpha. targets including ANGPTL4, CA9 and ALDOC in ME-180
cells.
[0068] FIG. 2 is a western blot image that show protein levels of
Carbonic anhydrase 9 (CA9) in ME-180 cells treated with the
peptidomimetic macrocycle SP-6.
[0069] FIG. 3 is a bar graph that shows efficacy of the
peptidomimetic macrocycle SP-6 in inhibiting p300/HIF1.alpha.
binding.
[0070] FIG. 4 is a line graph that shows efficacy of the
peptidomimetic macrocycle SP-6 in the PC-3 Prostate Xenograft
Model.
DETAILED DESCRIPTION OF THE INVENTION
[0071] The term "about" has the meaning as commonly understood by
one of ordinary skill in the art. In some embodiments, the term
"about" refers to .+-.10%. In some embodiments, the term "about"
refers to .+-.5%.
[0072] As used herein, the term "macrocycle" refers to a molecule
having a chemical structure including a ring or cycle formed by at
least 9 covalently bonded atoms.
[0073] As used herein, the term "peptidomimetic macrocycle" or
"crosslinked polypeptide" refers to a compound comprising a
plurality of amino acid residues joined by a plurality of peptide
bonds and at least one macrocycle-forming linker which forms a
macrocycle between a first naturally-occurring or
non-naturally-occurring amino acid residue (or analog) and a second
naturally-occurring or non-naturally-occurring amino acid residue
(or analog) within the same molecule. Peptidomimetic macrocycles
include embodiments where the macrocycle-forming linker connects
the .alpha. carbon of the first amino acid residue (or analog) to
the .alpha. carbon of the second amino acid residue (or analog).
The peptidomimetic macrocycles optionally include one or more
non-peptide bonds between one or more amino acid residues and/or
amino acid analog residues, and optionally include one or more
non-naturally-occurring amino acid residues or amino acid analog
residues in addition to any which form the macrocycle. A
"corresponding uncrosslinked polypeptide" when referred to in the
context of a peptidomimetic macrocycle is understood to relate to a
polypeptide of the same length as the macrocycle and comprising the
equivalent natural amino acids of the wild-type sequence
corresponding to the macrocycle.
[0074] As used herein, the term "stability" refers to the
maintenance of a defined secondary structure in solution by a
peptidomimetic macrocycle of the invention as measured by circular
dichroism, NMR or another biophysical measure, or resistance to
proteolytic degradation in vitro or in vivo. Non-limiting examples
of secondary structures contemplated in this invention are
.alpha.-helices, 3.sub.10 helices, .beta.-turns, and .beta.-pleated
sheets.
[0075] As used herein, the term "helical stability" refers to the
maintenance of a helical structure by a peptidomimetic macrocycle
of the invention as measured by circular dichroism or NMR. For
example, in some embodiments, the peptidomimetic macrocycles of the
invention exhibit at least a 1.25, 1.5, 1.75 or 2-fold increase in
.alpha.-helicity as determined by circular dichroism compared to a
corresponding uncrosslinked macrocycle.
[0076] The term "amino acid" refers to a molecule containing both
an amino group and a carboxyl group. Suitable amino acids include,
without limitation, both the D- and L-isomers of the
naturally-occurring amino acids, as well as non-naturally occurring
amino acids prepared by organic synthesis or other metabolic
routes. The term amino acid, as used herein, includes without
limitation, .alpha.-amino acids, natural amino acids, non-natural
amino acids, and amino acid analogs.
[0077] The term ".alpha.-amino acid" refers to a molecule
containing both an amino group and a carboxyl group bound to a
carbon which is designated the .alpha.-carbon.
[0078] The term ".beta.-amino acid" refers to a molecule containing
both an amino group and a carboxyl group in a .beta.
configuration.
[0079] The term "naturally occurring amino acid" refers to any one
of the twenty amino acids commonly found in peptides synthesized in
nature, and known by the one letter abbreviations A, R, N, C, D, Q,
E, G, H, I, L, K, M, F, P, S, T, W, Y and V.
[0080] The following table shows a summary of the properties of
natural amino acids:
TABLE-US-00001 3- 1- Side- Side-chain Letter Letter chain charge
Hydropathy Amino Acid Code Code Polarity (pH 7.4) Index Alanine Ala
A nonpolar neutral 1.8 Arginine Arg R polar positive -4.5
Asparagine Asn N polar neutral -3.5 Aspartic acid Asp D polar
negative -3.5 Cysteine Cys C polar neutral 2.5 Glutamic acid Glu E
polar negative -3.5 Glutamine Gln Q polar neutral -3.5 Glycine Gly
G nonpolar neutral -0.4 Histidine His H polar positive -3.2 (10%)
neutral (90%) Isoleucine Ile I nonpolar neutral 4.5 Leucine Leu L
nonpolar neutral 3.8 Lysine Lys K polar positive -3.9 Methionine
Met M nonpolar neutral 1.9 Phenylalanine Phe F nonpolar neutral 2.8
Proline Pro P nonpolar neutral -1.6 Serine Ser S polar neutral -0.8
Threonine Thr T polar neutral -0.7 Tryptophan Trp W nonpolar
neutral -0.9 Tyrosine Tyr Y polar neutral -1.3 Valine Val V
nonpolar neutral 4.2
[0081] "Hydrophobic amino acids" include small hydrophobic amino
acids and large hydrophobic amino acids. "Small hydrophobic amino
acids" are glycine, alanine, proline, and analogs thereof. "Large
hydrophobic amino acids" are valine, leucine, isoleucine,
phenylalanine, methionine, tryptophan, tyrosine, and analogs
thereof. "Polar amino acids" are serine, threonine, asparagine,
glutamine, cysteine, and analogs thereof. "Charged amino acids"
include positively charged amino acids and negatively charged amino
acids. "Positively charged amino acids" include lysine, arginine,
histidine, and analogs thereof. "Negatively charged amino acids"
include aspartate, glutamate, and analogs thereof.
[0082] The term "amino acid analog" refers to a molecule which is
structurally similar to an amino acid and which can be substituted
for an amino acid in the formation of a peptidomimetic macrocycle.
Amino acid analogs include, without limitation, f-amino acids and
amino acids where the amino or carboxy group is substituted by a
similarly reactive group (e.g., substitution of the primary amine
with a secondary or tertiary amine, or substitution of the carboxy
group with an ester).
[0083] The term "non-natural amino acid" refers to an amino acid
which is not one of the twenty amino acids commonly found in
peptides synthesized in nature, and known by the one letter
abbreviations A, R, N, C, D, Q, E, G, H, I, L, K, M, F, P, S, T, W,
Y and V. Non-natural amino acids or amino acid analogs include,
without limitation, structures according to the following:
##STR00032## ##STR00033## ##STR00034## ##STR00035## ##STR00036##
##STR00037## ##STR00038##
[0084] Amino acid analogs include .beta.-amino acid analogs.
Examples of 1-amino acid analogs include, but are not limited to,
the following: cyclic .beta.-amino acid analogs; .beta.-alanine;
(R)-.beta.-phenylalanine;
(R)-1,2,3,4-tetrahydro-isoquinoline-3-acetic acid;
(R)-3-amino-4-(1-naphthyl)-butyric acid;
(R)-3-amino-4-(2,4-dichlorophenyl)butyric acid;
(R)-3-amino-4-(2-chlorophenyl)-butyric acid;
(R)-3-amino-4-(2-cyanophenyl)-butyric acid;
(R)-3-amino-4-(2-fluorophenyl)-butyric acid;
(R)-3-amino-4-(2-furyl)-butyric acid;
(R)-3-amino-4-(2-methylphenyl)-butyric acid;
(R)-3-amino-4-(2-naphthyl)-butyric acid;
(R)-3-amino-4-(2-thienyl)-butyric acid;
(R)-3-amino-4-(2-trifluoromethylphenyl)-butyric acid;
(R)-3-amino-4-(3,4-dichlorophenyl)butyric acid;
(R)-3-amino-4-(3,4-difluorophenyl)butyric acid;
(R)-3-amino-4-(3-benzothienyl)-butyric acid;
(R)-3-amino-4-(3-chlorophenyl)-butyric acid;
(R)-3-amino-4-(3-cyanophenyl)-butyric acid;
(R)-3-amino-4-(3-fluorophenyl)-butyric acid;
(R)-3-amino-4-(3-methylphenyl)-butyric acid;
(R)-3-amino-4-(3-pyridyl)-butyric acid;
(R)-3-amino-4-(3-thienyl)-butyric acid;
(R)-3-amino-4-(3-trifluoromethylphenyl)-butyric acid;
(R)-3-amino-4-(4-bromophenyl)-butyric acid;
(R)-3-amino-4-(4-chlorophenyl)-butyric acid;
(R)-3-amino-4-(4-cyanophenyl)-butyric acid;
(R)-3-amino-4-(4-fluorophenyl)-butyric acid;
(R)-3-amino-4-(4-iodophenyl)-butyric acid;
(R)-3-amino-4-(4-methylphenyl)-butyric acid;
(R)-3-amino-4-(4-nitrophenyl)-butyric acid;
(R)-3-amino-4-(4-pyridyl)-butyric acid;
(R)-3-amino-4-(4-trifluoromethylphenyl)-butyric acid;
(R)-3-amino-4-pentafluoro-phenylbutyric acid;
(R)-3-amino-5-hexenoic acid; (R)-3-amino-5-hexynoic acid;
(R)-3-amino-5-phenylpentanoic acid; (R)-3-amino-6-phenyl-5-hexenoic
acid; (S)-1,2,3,4-tetrahydro-isoquinoline-3-acetic acid;
(S)-3-amino-4-(1-naphthyl)-butyric acid;
(S)-3-amino-4-(2,4-dichlorophenyl)butyric acid;
(S)-3-amino-4-(2-chlorophenyl)-butyric acid;
(S)-3-amino-4-(2-cyanophenyl)-butyric acid;
(S)-3-amino-4-(2-fluorophenyl)-butyric acid;
(S)-3-amino-4-(2-furyl)-butyric acid;
(S)-3-amino-4-(2-methylphenyl)-butyric acid;
(S)-3-amino-4-(2-naphthyl)-butyric acid;
(S)-3-amino-4-(2-thienyl)-butyric acid;
(S)-3-amino-4-(2-trifluoromethylphenyl)-butyric acid;
(S)-3-amino-4-(3,4-dichlorophenyl)butyric acid;
(S)-3-amino-4-(3,4-difluorophenyl)butyric acid;
(S)-3-amino-4-(3-benzothienyl)-butyric acid;
(S)-3-amino-4-(3-chlorophenyl)-butyric acid;
(S)-3-amino-4-(3-cyanophenyl)-butyric acid;
(S)-3-amino-4-(3-fluorophenyl)-butyric acid;
(S)-3-amino-4-(3-methylphenyl)-butyric acid;
(S)-3-amino-4-(3-pyridyl)-butyric acid;
(S)-3-amino-4-(3-thienyl)-butyric acid;
(S)-3-amino-4-(3-trifluoromethylphenyl)-butyric acid;
(S)-3-amino-4-(4-bromophenyl)-butyric acid;
(S)-3-amino-4-(4-chlorophenyl)-butyric acid;
(S)-3-amino-4-(4-cyanophenyl)-butyric acid;
(S)-3-amino-4-(4-fluorophenyl)-butyric acid;
(S)-3-amino-4-(4-iodophenyl)-butyric acid;
(S)-3-amino-4-(4-methylphenyl)-butyric acid;
(S)-3-amino-4-(4-nitrophenyl)-butyric acid;
(S)-3-amino-4-(4-pyridyl)-butyric acid;
(S)-3-amino-4-(4-trifluoromethylphenyl)-butyric acid;
(S)-3-amino-4-pentafluoro-phenylbutyric acid;
(S)-3-amino-5-hexenoic acid; (S)-3-amino-5-hexynoic acid;
(S)-3-amino-5-phenylpentanoic acid; (S)-3-amino-6-phenyl-5-hexenoic
acid; 1,2,5,6-tetrahydropyridine-3-carboxylic acid;
1,2,5,6-tetrahydropyridine-4-carboxylic acid;
3-amino-3-(2-chlorophenyl)-propionic acid;
3-amino-3-(2-thienyl)-propionic acid;
3-amino-3-(3-bromophenyl)-propionic acid;
3-amino-3-(4-chlorophenyl)-propionic acid;
3-amino-3-(4-methoxyphenyl)-propionic acid;
3-amino-4,4,4-trifluoro-butyric acid; 3-aminoadipic acid;
D-.beta.-phenylalanine; .beta.-leucine; L-.beta.-homoalanine;
L-.beta.-homoaspartic acid .gamma.-benzyl ester;
L-.beta.-homoglutamic acid .delta.-benzyl ester;
L-.beta.-homoisoleucine; L-.beta.-homoleucine;
L-.beta.-homomethionine; L-.beta.-homophenylalanine;
L-.beta.-homoproline; L-.beta.-homotryptophan; L-.beta.-homovaline;
L-N.omega.-benzyloxycarbonyl-.beta.-homolysine;
N.omega.-L-.beta.-homoarginine;
O-benzyl-L-.beta.-homohydroxyproline; O-benzyl-L-.beta.-homoserine;
O-benzyl-L-.beta.-homothreonine; O-benzyl-L-.beta.-homotyrosine;
.gamma.-trityl-L-.beta.-homoasparagine; (R)-.beta.-phenylalanine;
L-.beta.-homoaspartic acid .gamma.-t-butyl ester;
L-.beta.-homoglutamic acid .delta.-t-butyl ester;
L-N.omega.-.beta.-homolysine;
N.delta.-trityl-L-.beta.-homoglutamine;
N.omega.-2,2,4,6,7-pentamethyl-dihydrobenzofuran-5-sulfonyl-L-.beta.-homo-
arginine; O-t-butyl-L-.beta.-homohydroxy-proline;
O-t-butyl-L-.beta.-homoserine; O-t-butyl-L-.beta.-homothreonine;
O-t-butyl-L-.beta.-homotyrosine; 2-aminocyclopentane carboxylic
acid; and 2-aminocyclohexane carboxylic acid.
[0085] Amino acid analogs include analogs of alanine, valine,
glycine or leucine. Examples of amino acid analogs of alanine,
valine, glycine, and leucine include, but are not limited to, the
following: .alpha.-methoxyglycine; .alpha.-allyl-L-alanine;
.alpha.-aminoisobutyric acid; .alpha.-methyl-leucine;
.beta.-(1-naphthyl)-D-alanine; .beta.-(1-naphthyl)-L-alanine;
.beta.-(2-naphthyl)-D-alanine; .beta.-(2-naphthyl)-L-alanine;
.beta.-(2-pyridyl)-D-alanine; .beta.-(2-pyridyl)-L-alanine;
.beta.-(2-thienyl)-D-alanine; .beta.-(2-thienyl)-L-alanine;
.beta.-(3-benzothienyl)-D-alanine;
.beta.-(3-benzothienyl)-L-alanine; .beta.-(3-pyridyl)-D-alanine;
.beta.-(3-pyridyl)-L-alanine; .beta.-(4-pyridyl)-D-alanine;
.beta.-(4-pyridyl)-L-alanine; .beta.-chloro-L-alanine;
.beta.-cyano-L-alanin; .beta.-cyclohexyl-D-alanine;
.beta.-cyclohexyl-L-alanine; .beta.-cyclopenten-1-yl-alanine;
.beta.-cyclopentyl-alanine;
.beta.-cyclopropyl-L-Ala-OH.dicyclohexylammonium salt;
.beta.-t-butyl-D-alanine; .beta.-t-butyl-L-alanine;
.gamma.-aminobutyric acid; L-.alpha.,.beta.-diaminopropionic acid;
2,4-dinitro-phenylglycine; 2,5-dihydro-D-phenylglycine;
2-amino-4,4,4-trifluorobutyric acid; 2-fluoro-phenylglycine;
3-amino-4,4,4-trifluoro-butyric acid; 3-fluoro-valine;
4,4,4-trifluoro-valine; 4,5-dehydro-L-leu-OH.dicyclohexylammonium
salt; 4-fluoro-D-phenylglycine; 4-fluoro-L-phenylglycine;
4-hydroxy-D-phenylglycine; 5,5,5-trifluoro-leucine; 6-aminohexanoic
acid; cyclopentyl-D-Gly-OH.dicyclohexylammonium salt;
cyclopentyl-Gly-OH.dicyclohexylammonium salt;
D-.alpha.,.beta.-diaminopropionic acid; D-.alpha.-aminobutyric
acid; D-.alpha.-t-butylglycine; D-(2-thienyl)glycine;
D-(3-thienyl)glycine; D-2-aminocaproic acid; D-2-indanylglycine;
D-allylglycine*dicyclohexylammonium salt; D-cyclohexylglycine;
D-norvaline; D-phenylglycine; .beta.-aminobutyric acid;
.beta.-aminoisobutyric acid; (2-bromophenyl)glycine;
(2-methoxyphenyl)glycine; (2-methylphenyl)glycine;
(2-thiazoyl)glycine; (2-thienyl)glycine;
2-amino-3-(dimethylamino)-propionic acid;
L-.alpha.,.beta.-diaminopropionic acid; L-.alpha.-aminobutyric
acid; L-.alpha.-t-butylglycine; L-(3-thienyl)glycine;
L-2-amino-3-(dimethylamino)-propionic acid; L-2-aminocaproic acid
dicyclohexyl-ammonium salt; L-2-indanylglycine;
L-allylglycine*dicyclohexyl ammonium salt; L-cyclohexylglycine;
L-phenylglycine; L-propargylglycine; L-norvaline;
N-.alpha.-aminomethyl-L-alanine; D-.alpha.,.gamma.-diaminobutyric
acid; L-.alpha.,.gamma.-diaminobutyric acid;
.beta.-cyclopropyl-L-alanine;
(N-.beta.-(2,4-dinitrophenyl))-L-.alpha.,.beta.-diaminopropionic
acid;
(N-.beta.-1-(4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)ethyl)-D-.alpha.,.b-
eta.-diaminopropionic acid;
(N-.beta.-1-(4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)ethyl)-L-.alpha.,.b-
eta.-diaminopropionic acid;
(N-.beta.-4-methyltrityl)-L-.alpha.,.beta.-diaminopropionic acid;
(N-3-allyloxycarbonyl)-L-.alpha.,.beta.-diaminopropionic acid;
(N-.gamma.-1-(4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)ethyl)-D-.alpha.,.-
gamma.-diaminobutyric acid;
(N-.gamma.-1-(4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)ethyl)-L-.alpha.,.-
gamma.-diaminobutyric acid;
(N-.gamma.-4-methyltrityl)-D-.alpha.,.gamma.-diaminobutyric acid;
(N-.gamma.-4-methyltrityl)-L-.alpha.,.gamma.-diaminobutyric acid;
(N-7-allyloxycarbonyl)-L-.alpha.,.gamma.-diaminobutyric acid;
D-.alpha.,.gamma.-diaminobutyric acid; 4,5-dehydro-L-leucine;
cyclopentyl-D-Gly-OH; cyclopentyl-Gly-OH; D-allylglycine;
D-homocyclohexylalanine; L-1-pyrenylalanine; L-2-aminocaproic acid;
L-allylglycine; L-homocyclohexylalanine; and
N-(2-hydroxy-4-methoxy-Bzl)-Gly-OH.
[0086] Amino acid analogs include analogs of arginine or lysine.
Examples of amino acid analogs of arginine and lysine include, but
are not limited to, the following: citrulline;
L-2-amino-3-guanidinopropionic acid; L-2-amino-3-ureidopropionic
acid; L-citrulline; Lys(Me).sub.2-OH; Lys(N.sub.3)--OH;
N.delta.-benzyloxycarbonyl-L-omithine; N.omega.-nitro-D-arginine;
N.omega.-nitro-L-arginine; .alpha.-methyl-omithine;
2,6-diaminoheptanedioic acid; L-omithine;
(N.delta.-1-(4,4-dimethyl-2,6-dioxo-cyclohex-1-ylidene)ethyl)-D-omithine;
(N.delta.-1-(4,4-dimethyl-2,6-dioxo-cyclohex-1-ylidene)ethyl)-L-omithine;
(N6-4-methyltrityl)-D-omithine; (N6-4-methyltrityl)-L-omithine;
D-omithine; L-omithine; Arg(MeXPbf)-OH; Arg(Me).sub.2-OH
(asymmetrical); Arg(Me)2-OH (symmetrical); Lys(ivDde)-OH;
Lys(Me)2-OH.HCl; Lys(Me3)-OH chloride; N.omega.-nitro-D-arginine;
and N.omega.-nitro-L-arginine.
[0087] Amino acid analogs include analogs of aspartic or glutamic
acids. Examples of amino acid analogs of aspartic and glutamic
acids include, but are not limited to, the following:
.alpha.-methyl-D-aspartic acid; .alpha.-methyl-glutamic acid;
.alpha.-methyl-L-aspartic acid; .gamma.-methylene-glutamic acid;
(N-.gamma.-ethyl)-L-glutamine;
[N-.alpha.-(4-aminobenzoyl)]-L-glutamic acid; 2,6-diaminopimelic
acid; L-.alpha.-aminosuberic acid; D-2-aminoadipic acid;
D-.alpha.-aminosuberic acid; .alpha.-aminopimelic acid;
iminodiacetic acid; L-2-aminoadipic acid;
threo-.beta.-methyl-aspartic acid; .gamma.-carboxy-D-glutamic acid
.gamma.,.gamma.-di-t-butyl ester; .gamma.-carboxy-L-glutamic acid
.gamma.,.gamma.-di-t-butyl ester; Glu(OAll)-OH; L-Asu(OtBu)--OH;
and pyroglutamic acid.
[0088] Amino acid analogs include analogs of cysteine and
methionine. Examples of amino acid analogs of cysteine and
methionine include, but are not limited to, Cys(famesyl)-OH,
Cys(famesyl)-OMe, .alpha.-methyl-methionine,
Cys(2-hydroxyethyl)-OH, Cys(3-aminopropyl)-OH,
2-amino-4-(ethylthio)butyric acid, buthionine,
buthioninesulfoximine, ethionine, methionine methylsulfonium
chloride, selenomethionine, cysteic acid,
[2-(4-pyridyl)ethyl]-DL-penicillamine,
[2-(4-pyridyl)ethyl]-L-cysteine, 4-methoxybenzyl-D-penicillamine,
4-methoxybenzyl-L-penicillamine, 4-methylbenzyl-D-penicillamine,
4-methylbenzyl-L-penicillamine, benzyl-D-cysteine,
benzyl-L-cysteine, benzyl-DL-homocysteine, carbamoyl-L-cysteine,
carboxyethyl-L-cysteine, carboxymethyl-L-cysteine,
diphenylmethyl-L-cysteine, ethyl-L-cysteine, methyl-L-cysteine,
t-butyl-D-cysteine, trityl-L-homocysteine, trityl-D-penicillamine,
cystathionine, homocystine, L-homocystine,
(2-aminoethyl)-L-cysteine, seleno-L-cystine, cystathionine,
Cys(StBu)--OH, and acetamidomethyl-D-penicillamine.
[0089] Amino acid analogs include analogs of phenylalanine and
tyrosine. Examples of amino acid analogs of phenylalanine and
tyrosine include .beta.-methyl-phenylalanine,
.beta.-hydroxyphenylalanine,
.alpha.-methyl-3-methoxy-DL-phenylalanine,
.alpha.-methyl-D-phenylalanine, .alpha.-methyl-L-phenylalanine,
1,2,3,4-tetrahydroisoquinoline-3-carboxylic acid,
2,4-dichloro-phenylalanine, 2-(trifluoromethyl)-D-phenylalanine,
2-(trifluoromethyl)-L-phenylalanine, 2-bromo-D-phenylalanine,
2-bromo-L-phenylalanine, 2-chloro-D-phenylalanine,
2-chloro-L-phenylalanine, 2-cyano-D-phenylalanine,
2-cyano-L-phenylalanine, 2-fluoro-D-phenylalanine,
2-fluoro-L-phenylalanine, 2-methyl-D-phenylalanine,
2-methyl-L-phenylalanine, 2-nitro-D-phenylalanine,
2-nitro-L-phenylalanine, 2;4;5-trihydroxy-phenylalanine,
3,4,5-trifluoro-D-phenylalanine, 3,4,5-trifluoro-L-phenylalanine,
3,4-dichloro-D-phenylalanine, 3,4-dichloro-L-phenylalanine,
3,4-difluoro-D-phenylalanine, 3,4-difluoro-L-phenylalanine,
3,4-dihydroxy-L-phenylalanine, 3,4-dimethoxy-L-phenylalanine,
3,5,3'-triiodo-L-thyronine, 3,5-diiodo-D-tyrosine,
3,5-diiodo-L-tyrosine, 3,5-diiodo-L-thyronine,
3-(trifluoromethyl)-D-phenylalanine,
3-(trifluoromethyl)-L-phenylalanine, 3-amino-L-tyrosine,
3-bromo-D-phenylalanine, 3-bromo-L-phenylalanine,
3-chloro-D-phenylalanine, 3-chloro-L-phenylalanine,
3-chloro-L-tyrosine, 3-cyano-D-phenylalanine,
3-cyano-L-phenylalanine, 3-fluoro-D-phenylalanine,
3-fluoro-L-phenylalanine, 3-fluoro-tyrosine,
3-iodo-D-phenylalanine, 3-iodo-L-phenylalanine, 3-iodo-L-tyrosine,
3-methoxy-L-tyrosine, 3-methyl-D-phenylalanine,
3-methyl-L-phenylalanine, 3-nitro-D-phenylalanine,
3-nitro-L-phenylalanine, 3-nitro-L-tyrosine,
4-(trifluoromethyl)-D-phenylalanine,
4-(trifluoromethyl)-L-phenylalanine, 4-amino-D-phenylalanine,
4-amino-L-phenylalanine, 4-benzoyl-D-phenylalanine,
4-benzoyl-L-phenylalanine,
4-bis(2-chloroethyl)amino-L-phenylalanine, 4-bromo-D-phenylalanine,
4-bromo-L-phenylalanine, 4-chloro-D-phenylalanine,
4-chloro-L-phenylalanine, 4-cyano-D-phenylalanine,
4-cyano-L-phenylalanine, 4-fluoro-D-phenylalanine,
4-fluoro-L-phenylalanine, 4-iodo-D-phenylalanine,
4-iodo-L-phenylalanine, homophenylalanine, thyroxine,
3,3-diphenylalanine, thyronine, ethyl-tyrosine, and
methyl-tyrosine.
[0090] Amino acid analogs include analogs of proline. Examples of
amino acid analogs of proline include, but are not limited to,
3,4-dehydro-proline, 4-fluoro-proline, cis-4-hydroxy-proline,
thiazolidine-2-carboxylic acid, and trans-4-fluoro-proline.
[0091] Amino acid analogs include analogs of serine and threonine.
Examples of amino acid analogs of serine and threonine include, but
are not limited to, 3-amino-2-hydroxy-5-methylhexanoic acid,
2-amino-3-hydroxy-4-methylpentanoic acid, 2-amino-3-ethoxybutanoic
acid, 2-amino-3-methoxybutanoic acid,
4-amino-3-hydroxy-6-methylheptanoic acid,
2-amino-3-benzyloxypropionic acid, 2-amino-3-benzyloxypropionic
acid, 2-amino-3-ethoxypropionic acid, 4-amino-3-hydroxybutanoic
acid, and .alpha.-methylserine.
[0092] Amino acid analogs include analogs of tryptophan. Examples
of amino acid analogs of tryptophan include, but are not limited
to, the following: .alpha.-methyl-tryptophan;
3-(3-benzothienyl)-D-alanine; .beta.-(3-benzothienyl)-L-alanine;
1-methyl-tryptophan; 4-methyl-tryptophan; 5-benzyloxy-tryptophan;
5-bromo-tryptophan; 5-chloro-tryptophan; 5-fluoro-tryptophan;
5-hydroxy-tryptophan; 5-hydroxy-L-tryptophan; 5-methoxy-tryptophan;
5-methoxy-L-tryptophan; 5-methyl-tryptophan; 6-bromo-tryptophan;
6-chloro-D-tryptophan; 6-chloro-tryptophan; 6-fluoro-tryptophan;
6-methyl-tryptophan; 7-benzyloxy-tryptophan; 7-bromo-tryptophan;
7-methyl-tryptophan; D-1,2,3,4-tetrahydro-norharman-3-carboxylic
acid; 6-methoxy-1,2,3,4-tetrahydronorharman-1-carboxylic acid;
7-azatryptophan; L-1,2,3,4-tetrahydro-norharman-3-carboxylic acid;
5-methoxy-2-methyl-tryptophan; and 6-chloro-L-tryptophan.
[0093] In some embodiments, amino acid analogs are racemic. In some
embodiments, the D isomer of the amino acid analog is used. In some
embodiments, the L isomer of the amino acid analog is used. In
other embodiments, the amino acid analog comprises chiral centers
that are in the R or S configuration. In still other embodiments,
the amino group(s) of a .beta.-amino acid analog is substituted
with a protecting group, e.g., tert-butyloxycarbonyl (BOC group),
9-fluorenylmethyloxycarbonyl (FMOC), tosyl, and the like. In yet
other embodiments, the carboxylic acid functional group of a
.beta.-amino acid analog is protected, e.g., as its ester
derivative. In some embodiments the salt of the amino acid analog
is used.
[0094] A "non-essential" amino acid residue is a residue that can
be altered from the wild-type sequence of a polypeptide without
abolishing or substantially abolishing its essential biological or
biochemical activity (e.g., receptor binding or activation). An
"essential" amino acid residue is a residue that, when altered from
the wild-type sequence of the polypeptide, results in abolishing or
substantially abolishing the polypeptide's essential biological or
biochemical activity.
[0095] A "conservative amino acid substitution" is one in which the
amino acid residue is replaced with an amino acid residue having a
similar side chain. Families of amino acid residues having similar
side chains have been defined in the art. These families include
amino acids with basic side chains (e.g., K, R, H), acidic side
chains (e.g., D, E), uncharged polar side chains (e.g., G, N, Q, S,
T, Y, C), nonpolar side chains (e.g., A, V, L, I, P, F, M, W),
beta-branched side chains (e.g., T, V, I) and aromatic side chains
(e.g., Y, F, W, H). Thus, a predicted nonessential amino acid
residue in a polypeptide, for example, is replaced with another
amino acid residue from the same side chain family. Other examples
of acceptable substitutions are substitutions based on isosteric
considerations (e.g. norleucine for methionine) or other properties
(e.g. 2-thienylalanine for phenylalanine).
[0096] The term "capping group" refers to the chemical moiety
occurring at either the carboxy or amino terminus of the
polypeptide chain of the subject peptidomimetic macrocycle. The
capping group of a carboxy terminus includes an unmodified
carboxylic acid (ie --COOH) or a carboxylic acid with a
substituent. For example, the carboxy terminus can be substituted
with an amino group to yield a carboxamide at the C-terminus.
Various substituents include but are not limited to primary and
secondary amines, including pegylated secondary amines.
Representative secondary amine capping groups for the C-terminus
include:
##STR00039##
[0097] The capping group of an amino terminus includes an
unmodified amine (ie --NH.sub.2) or an amine with a substituent.
For example, the amino terminus can be substituted with an acyl
group to yield a carboxamide at the N-terminus. Various
substituents include but are not limited to substituted acyl
groups, including C.sub.1-C.sub.6 carbonyls, C.sub.7-C.sub.30
carbonyls, and pegylated carbamates. Representative capping groups
for the N-terminus include:
##STR00040##
[0098] The term "member" as used herein in conjunction with
macrocycles or macrocycle-forming linkers refers to the atoms that
form or can form the macrocycle, and excludes substituent or side
chain atoms. By analogy, cyclodecane, 1,2-difluoro-decane and
1,3-dimethyl cyclodecane are all considered ten-membered
macrocycles as the hydrogen or fluoro substituents or methyl side
chains do not participate in forming the macrocycle.
[0099] The symbol "" when used as part of a molecular structure
refers to a single bond or a trans or cis double bond.
[0100] The term "amino acid side chain" refers to a moiety attached
to the .alpha.-carbon (or another backbone atom) in an amino acid.
For example, the amino acid side chain for alanine is methyl, the
amino acid side chain for phenylalanine is phenylmethyl, the amino
acid side chain for cysteine is thiomethyl, the amino acid side
chain for aspartate is carboxymethyl, the amino acid side chain for
tyrosine is 4-hydroxyphenylmethyl, etc. Other non-naturally
occurring amino acid side chains are also included, for example,
those that occur in nature (e.g., an amino acid metabolite) or
those that are made synthetically (e.g., an .alpha.,.alpha.
di-substituted amino acid).
[0101] The term ".alpha.,.alpha. di-substituted amino" acid refers
to a molecule or moiety containing both an amino group and a
carboxyl group bound to a carbon (the .alpha.-carbon) that is
attached to two natural or non-natural amino acid side chains.
[0102] The term "polypeptide" encompasses two or more naturally or
non-naturally-occurring amino acids joined by a covalent bond
(e.g., an amide bond). Polypeptides as described herein include
full length proteins (e.g., fully processed proteins) as well as
shorter amino acid sequences (e.g., fragments of
naturally-occurring proteins or synthetic polypeptide
fragments).
[0103] The term "macrocyclization reagent" or "macrocycle-forming
reagent" as used herein refers to any reagent which may be used to
prepare a peptidomimetic macrocycle of the invention by mediating
the reaction between two reactive groups. Reactive groups may be,
for example, an azide and alkyne, in which case macrocyclization
reagents include, without limitation, Cu reagents such as reagents
which provide a reactive Cu(I) species, such as CuBr, CuI or CuOTf,
as well as Cu(II) salts such as Cu(CO.sub.2CH.sub.3).sub.2,
CuSO.sub.4, and CuCl.sub.2 that can be converted in situ to an
active Cu(I) reagent by the addition of a reducing agent such as
ascorbic acid or sodium ascorbate. Macrocyclization reagents may
additionally include, for example, Ru reagents known in the art
such as Cp*RuCl(PPh.sub.3).sub.2, [Cp*RuCl].sub.4 or other Ru
reagents which may provide a reactive Ru(II) species. In other
cases, the reactive groups are terminal olefins. In such
embodiments, the macrocyclization reagents or macrocycle-forming
reagents are metathesis catalysts including, but not limited to,
stabilized, late transition metal carbene complex catalysts such as
Group VIII transition metal carbene catalysts. For example, such
catalysts are Ru and Os metal centers having a +2 oxidation state,
an electron count of 16 and pentacoordinated. In other examples,
catalysts have W or Mo centers. Various catalysts are disclosed in
Grubbs et al., "Ring Closing Metathesis and Related Processes in
Organic Synthesis" Acc. Chem. Res. 1995, 28, 446-452, and U.S. Pat.
Nos. 5,811,515; 7,932,397; U.S. Application No. 2011/0065915; U.S.
Application No. 2011/0245477; Yu et al., "Synthesis of Macrocyclic
Natural Products by Catalyst-Controlled Stereoselective
Ring-Closing Metathesis," Nature 2011, 479, 88; and Peryshkov et
al., "Z-Selective Olefin Metathesis Reactions Promoted by Tungsten
Oxo Alkylidene Complexes," J. Am. Chem. Soc. 2011, 133, 20754. In
yet other cases, the reactive groups are thiol groups. In such
embodiments, the macrocyclization reagent is, for example, a linker
functionalized with two thiol-reactive groups such as halogen
groups.
[0104] The term "halo" or "halogen" refers to fluorine, chlorine,
bromine or iodine or a radical thereof.
[0105] The term "alkyl" refers to a hydrocarbon chain that is a
straight chain or branched chain, containing the indicated number
of carbon atoms. For example, C.sub.1-C.sub.10 indicates that the
group has from 1 to 10 (inclusive) carbon atoms in it. In the
absence of any numerical designation, "alkyl" is a chain (straight
or branched) having 1 to 20 (inclusive) carbon atoms in it.
[0106] The term "alkylene" refers to a divalent alkyl (i.e.,
--R--).
[0107] The term "alkenyl" refers to a hydrocarbon chain that is a
straight chain or branched chain having one or more carbon-carbon
double bonds. The alkenyl moiety contains the indicated number of
carbon atoms. For example, C.sub.2-C.sub.10 indicates that the
group has from 2 to 10 (inclusive) carbon atoms in it. The term
"lower alkenyl" refers to a C.sub.2-C.sub.6 alkenyl chain. In the
absence of any numerical designation, "alkenyl" is a chain
(straight or branched) having 2 to 20 (inclusive) carbon atoms in
it.
[0108] The term "alkynyl" refers to a hydrocarbon chain that is a
straight chain or branched chain having one or more carbon-carbon
triple bonds. The alkynyl moiety contains the indicated number of
carbon atoms. For example, C.sub.2-C.sub.10 indicates that the
group has from 2 to 10 (inclusive) carbon atoms in it. The term
"lower alkynyl" refers to a C.sub.2-C.sub.6 alkynyl chain. In the
absence of any numerical designation, "alkynyl" is a chain
(straight or branched) having 2 to 20 (inclusive) carbon atoms in
it.
[0109] The term "aryl" refers to a 6-carbon monocyclic or 10-carbon
bicyclic aromatic ring system wherein 0, 1, 2, 3, or 4 atoms of
each ring are substituted by a substituent. Examples of aryl groups
include phenyl, naphthyl and the like. The term "arylalkoxy" refers
to an alkoxy substituted with aryl.
[0110] "Arylalkyl" refers to an aryl group, as defined above,
wherein one of the aryl group's hydrogen atoms has been replaced
with a C.sub.1-C.sub.5 alkyl group, as defined above.
Representative examples of an arylalkyl group include, but are not
limited to, 2-methylphenyl, 3-methylphenyl, 4-methylphenyl,
2-ethylphenyl, 3-ethylphenyl, 4-ethylphenyl, 2-propylphenyl,
3-propylphenyl, 4-propylphenyl, 2-butylphenyl, 3-butylphenyl,
4-butylphenyl, 2-pentylphenyl, 3-pentylphenyl, 4-pentylphenyl,
2-isopropylphenyl, 3-isopropylphenyl, 4-isopropylphenyl,
2-isobutylphenyl, 3-isobutylphenyl, 4-isobutylphenyl,
2-sec-butylphenyl, 3-sec-butylphenyl, 4-sec-butylphenyl,
2-t-butylphenyl, 3-t-butylphenyl and 4-t-butylphenyl.
[0111] "Arylamido" refers to an aryl group, as defined above,
wherein one of the aryl group's hydrogen atoms has been replaced
with one or more --C(O)NH.sub.2 groups. Representative examples of
an arylamido group include 2-C(O)NH2-phenyl, 3-C(O)NH.sub.2-phenyl,
4-C(O)NH.sub.2-phenyl, 2-C(O)NH.sub.2-pyridyl,
3-C(O)NH.sub.2-pyridyl, and 4-C(O)NH.sub.2-pyridyl,
[0112] "Alkylheterocycle" refers to a C.sub.1-C.sub.5 alkyl group,
as defined above, wherein one of the C.sub.1-C.sub.5 alkyl group's
hydrogen atoms has been replaced with a heterocycle. Representative
examples of an alkylheterocycle group include, but are not limited
to, --CH.sub.2CH.sub.2-morpholine, --CH.sub.2CH.sub.2-piperidine,
--CH.sub.2CH.sub.2CH.sub.2-morpholine, and
--CH.sub.2CH.sub.2CH.sub.2-imidazole.
[0113] "Alkylamido" refers to a C.sub.1-C.sub.5 alkyl group, as
defined above, wherein one of the C.sub.1-C.sub.5 alkyl group's
hydrogen atoms has been replaced with a --C(O)NH.sub.2 group.
Representative examples of an alkylamido group include, but are not
limited to, --CH.sub.2--C(O)NH.sub.2,
--CH.sub.2CH.sub.2--C(O)NH.sub.2,
--CH.sub.2CH.sub.2CH.sub.2C(O)NH.sub.2,
--CH.sub.2CH.sub.2CH.sub.2CH.sub.2C(O)NH.sub.2,
--CH.sub.2CH.sub.2CH.sub.2CH.sub.2CH.sub.2C(O)NH.sub.2,
--CH.sub.2CH(C(O)NH.sub.2)CH.sub.3,
--CH.sub.2CH(C(O)NH.sub.2)CH.sub.2CH.sub.3,
--CH(C(O)NH.sub.2)CH.sub.2CH.sub.3,
--C(CH.sub.3).sub.2CH.sub.2C(O)NH.sub.2,
--CH.sub.2--CH.sub.2--NH--C(O)--CH.sub.3,
--CH.sub.2--CH.sub.2--NH--C(O)--CH.sub.3--CH3, and
--CH.sub.2--CH.sub.2--NH--C(O)--CH.dbd.CH.sub.2.
[0114] "Alkanol" refers to a C.sub.1-C.sub.5 alkyl group, as
defined above, wherein one of the C.sub.1-C.sub.5 alkyl group's
hydrogen atoms has been replaced with a hydroxyl group.
Representative examples of an alkanol group include, but are not
limited to, --CH.sub.2OH, --CH.sub.2CH.sub.2OH,
--CH.sub.2CH.sub.2CH.sub.2OH, --CH.sub.2CH.sub.2CH.sub.2CH.sub.2OH,
--CH.sub.2CH.sub.2CH.sub.2CH.sub.2CH.sub.2OH,
--CH.sub.2CH(OH)CH.sub.3, --CH.sub.2CH(OH)CH.sub.2CH.sub.3,
--CH(OH)CH.sub.3 and --C(CH.sub.3).sub.2CH.sub.2OH.
[0115] "Alkylcarboxy" refers to a C.sub.1-C.sub.5 alkyl group, as
defined above, wherein one of the C.sub.1-C.sub.5 alkyl group's
hydrogen atoms has been replaced with a --COOH group.
Representative examples of an alkylcarboxy group include, but are
not limited to, --CH.sub.2COOH, --CH.sub.2CH.sub.2COOH,
--CH.sub.2CH.sub.2CH.sub.2COOH,
--CH.sub.2CH.sub.2CH.sub.2CH.sub.2COOH, --CH.sub.2CH(COOH)CH.sub.3,
--CH.sub.2CH.sub.2CH.sub.2CH.sub.2CH.sub.2COOH,
--CH.sub.2CH(COOH)CH.sub.2CH.sub.3, --CH(COOH)CH.sub.2CH.sub.3 and
--C(CH.sub.3).sub.2CH.sub.2COOH.
[0116] The term "cycloalkyl" as employed herein includes saturated
and partially unsaturated cyclic hydrocarbon groups having 3 to 12
carbons, preferably 3 to 8 carbons, and more preferably 3 to 6
carbons, wherein the cycloalkyl group additionally is optionally
substituted. Some cycloalkyl groups include, without limitation,
cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl,
cyclohexenyl, cycloheptyl, and cyclooctyl.
[0117] The term "heteroaryl" refers to an aromatic 5-8 membered
monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic
ring system having 1-3 heteroatoms if monocyclic, 1-6 heteroatoms
if bicyclic, or 1-9 heteroatoms if tricyclic, said heteroatoms
selected from O, N, or S (e.g., carbon atoms and 1-3, 1-6, or 1-9
heteroatoms of O, N, or S if monocyclic, bicyclic, or tricyclic,
respectively), wherein 0, 1, 2, 3, or 4 atoms of each ring are
substituted by a substituent. Examples of heteroaryl groups include
pyridyl, furyl or furanyl, imidazolyl, benzimidazolyl, pyrimidinyl,
thiophenyl or thienyl, quinolinyl, indolyl, thiazolyl, and the
like.
[0118] The term "heteroarylalkyl" or the term "heteroaralkyl"
refers to an alkyl substituted with a heteroaryl. The term
"heteroarylalkoxy" refers to an alkoxy substituted with
heteroaryl.
[0119] The term "heteroarylalkyl" or the term "heteroaralkyl"
refers to an alkyl substituted with a heteroaryl. The term
"heteroarylalkoxy" refers to an alkoxy substituted with
heteroaryl.
[0120] The term "heterocyclyl" refers to a nonaromatic 5-8 membered
monocyclic, 8-12 membered bicyclic, or 11-14 membered tricyclic
ring system having 1-3 heteroatoms if monocyclic, 1-6 heteroatoms
if bicyclic, or 1-9 heteroatoms if tricyclic, said heteroatoms
selected from O, N, or S (e.g., carbon atoms and 1-3, 1-6, or 1-9
heteroatoms of O, N, or S if monocyclic, bicyclic, or tricyclic,
respectively), wherein 0, 1, 2 or 3 atoms of each ring are
substituted by a substituent. Examples of heterocyclyl groups
include piperazinyl, pyrrolidinyl, dioxanyl, morpholinyl,
tetrahydrofuranyl, and the like.
[0121] The term "substituent" refers to a group replacing a second
atom or group such as a hydrogen atom on any molecule, compound or
moiety. Suitable substituents include, without limitation, halo,
hydroxy, mercapto, oxo, nitro, haloalkyl, alkyl, alkaryl, aryl,
aralkyl, alkoxy, thioalkoxy, aryloxy, amino, alkoxycarbonyl, amido,
carboxy, alkanesulfonyl, alkylcarbonyl, and cyano groups.
[0122] In some embodiments, the compounds of this invention contain
one or more asymmetric centers and thus occur as racemates and
racemic mixtures, single enantiomers, individual diastereomers and
diastereomeric mixtures. All such isomeric forms of these compounds
are included in the present invention unless expressly provided
otherwise. In some embodiments, the compounds of this invention are
also represented in multiple tautomeric forms, in such instances,
the invention includes all tautomeric forms of the compounds
described herein (e.g., if alkylation of a ring system results in
alkylation at multiple sites, the invention includes all such
reaction products). All such isomeric forms of such compounds are
included in the present invention unless expressly provided
otherwise. All crystal forms of the compounds described herein are
included in the present invention unless expressly provided
otherwise.
[0123] As used herein, the terms "increase" and "decrease" mean,
respectively, to cause a statistically significantly (i.e.,
p<0.1) increase or decrease of at least 5%.
[0124] As used herein, the recitation of a numerical range for a
variable is intended to convey that the variable is equal to any of
the values within that range. Thus, for a variable which is
inherently discrete, the variable is equal to any integer value
within the numerical range, including the end-points of the range.
Similarly, for a variable which is inherently continuous, the
variable is equal to any real value within the numerical range,
including the end-points of the range. As an example, and without
limitation, a variable which is described as having values between
0 and 2 takes the values 0, 1 or 2 if the variable is inherently
discrete, and takes the values 0.0, 0.1, 0.01, 0.001, or any other
real values .gtoreq.0 and .ltoreq.2 if the variable is inherently
continuous.
[0125] As used herein, unless specifically indicated otherwise, the
word "or" is used in the inclusive sense of "and/or" and not the
exclusive sense of "either/or."
[0126] The term "on average" represents the mean value derived from
performing at least three independent replicates for each data
point.
[0127] The term "biological activity" encompasses structural and
functional properties of a macrocycle of the invention. Biological
activity is, for example, structural stability, alpha-helicity,
affinity for a target, resistance to proteolytic degradation, cell
penetrability, intracellular stability, in vivo stability, or any
combination thereof.
[0128] The details of one or more particular embodiments of the
invention are set forth in the accompanying drawings and the
description below. Other features, objects, and advantages of the
invention will be apparent from the description and drawings, and
from the claims.
Peptidomimetic Macrocycles of the Invention
[0129] The present invention provides pharmaceutical formulations
comprising an effective amount of peptidomimetic macrocycles or
pharmaceutically acceptable salts thereof. The peptidomimetic
macrocycles of the invention are cross-linked (e.g., stapled or
stitched) and possess improved pharmaceutical properties relative
to their corresponding uncross-linked peptidomimetic macrocycles.
These improved properties include improved bioavailability,
enhanced chemical and in vivo stability, increased potency, and
reduced immunogenicity (i.e., fewer or less severe injection site
reactions).
[0130] In some embodiments, the peptide sequences are derived from
a Cited2 peptide. For example, the peptide sequences are derived
from human Cited2 (222-244) or human Cited2 (217-248).
[0131] In some embodiments, the peptide sequences are derived from
a Cited2 peptide and a HIF1.alpha. peptide. For example, the
peptide sequences are derived from human Cited2 (222-244) and human
HIF1.alpha. (812-826). For example, the peptide sequences are
derived from human Cited2 (222-244) and human HIF1.alpha.
(794-804).
[0132] Non-limiting exemplary lists of suitable Cited2-derived
peptides for use in the present invention are given in Tables 1a,
1b, and 1c below; and a non-limiting exemplary list of suitable
hybrid peptides derived from Cited2 and HIF1.alpha. for use in the
present invention is given in Table 2.
TABLE-US-00002 TABLE 1a (SEQ ID NOS 17-56, respectively, in order
of appearance) calcu- calcu- lated lated observed mass mass SP # 1
2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26
27 28 29 30 31 32 masses (M + 2) (M + 3) SP-1 Ac-- F I D E E V L M
$ L V I $ M G L D R I K E L P E L W L --NH2 1102.75 1653.42 1102.61
SP-2 Ac-- F I D E E V L Nle $ L V I $ Nle G L D R I K E L P E L W L
--NH2 1091.23 1635.46 1090.64 SP-3 Ac-- F I D E E V L M $ L V I $ M
A L D R I K E L P E L W L --NH2 1108.07 1660.43 1107.29 SP-4 Ac-- F
I D E E V L Nle $ L V I $ Nle A L D R I K E L P E L W L --NH2
1095.67 1642.47 1095.32 SP-5 Ac-- F I D E E V L M $ L V I $ M A L D
R I --NH2 1157.1 1156.14 771.1 SP-6 Ac-- F I D E E V L Nle $ L V I
$ Nle A L D R I --NH2 1138.5 1138.19 759.13 SP-7 Ac-- F I D E E V L
M $ L V I $ M A L --NH2 964.5 964 04 643.03 SP-8 Ac-- F I D E E V L
Nle $ L V I $ Nle A L --NH2 946.56 946.08 631.06 SP-9 Ac-- A I D E
E V L Nle $ L V I $ Nle A L D R I --NH2 1100.86 1100.17 733.78
SP-10 Ac-- F A D E E V L Nle $ L V I $ Nle A L D R I --NH2 1117.32
1117.16 745.11 SP-11 Ac-- F I A E E V L Nle $ L V I $ Nle A L D R I
--NH2 1116.86 1116.19 744.46 SP-12 Ac-- F I D A E V L Nle $ L V I $
Nle A L D R I --NH2 1109.83 1109.19 739.79 SP-13 Ac-- F I D E A V L
Nle $ L V I $ Nle A L D R I --NH2 1109.46 1109.19 739.79 SP-14 Ac--
F I D E E A L Nle $ L V I $ Nle A L D R I --NH2 1125 1124.17 749.78
SP-15 Ac-- F I D E E V A Nle $ L V I $ Nle A L D R I --NH2 1117.88
1117.16 745.11 SP-16 Ac-- F I D E E V L A $ L V I $ Nle A L D R I
--NH2 1118.06 1117.16 745.11 SP-17 Ac-- F I D E E V L Nle $ A V I $
Nle A L D R I --NH2 1117.78 1117.16 745.11 SP-18 Ac-- F I D E E V L
Nle $ L A I $ Nle A L D R I --NH2 1124.91 1124.17 749.78 SP-19 Ac--
F I D E E V L Nle $ L V A $ Nle A L D R I --NH2 1117.78 1117.16
745.11 SP-20 Ac-- F I D E E V L Nle $ L V I $ A A L D R I --NH2
1117.88 1117.16 745.11 SP-21 Ac-- F I D E E V L Nle $ L V I $ Nle G
L D R I --NH2 1131.94 1131.18 754.46 SP-22 Ac-- F I D E E V L Nle $
L V I $ Nle A A D R I --NH2 1118.06 1117.16 745.11 SP-23 Ac-- F I D
E E V L Nle $ L V I $ Nle A L A R I --NH2 1116.86 1116.19 744.46
SP-24 Ac-- F I D E E V L Nle $ L V I $ Nle A L D A I --NH2 1096.04
1095.66 730.77 SP-25 Ac-- F I D E E V L Nle $ L V I $ Nle A L D R A
--NH2 1117.78 1117.16 745.11 SP-26 Ac-- F I D E E V L A $ L V I $ A
A L D R I --NH2 1096.51 1096.14 731.1 SP-27 Ac-- F I D E E V L Nle
$ L V I $ Nle A L D R --NH2 1082.35 1081.65 721.43 SP-28 Ac-- F I D
E E V L A $ L V I $ A A L D R --NH2 1039.99 1039.6 693.4 SP-29 Ac--
D F I D E E V L Nle $ L V I $ Nle A L D R I --NH2 1196.5 1195.7
797.47 SP-30 Ac-- E I D E E V L Nle $ L V I $ Nle A L D R I --NH2
1129.81 1129.18 753.12 SP-31 Ac-- F E D E E V L Nle $ L V I $ Nle A
L D R I --NH2 1146.64 1146.17 764.45 SP-32 Ac-- F I D E E D L Nle $
L V I $ Nle A L D R I --NH2 1146.83 1146.17 764.45 SP-33 Ac-- F I D
E E V E Nle $ L V I $ Nle A L D R I --NH2 1146.83 1146.17 764.45
SP-34 Ac-- F I D E E V L D $ L V I $ Nle A L D R I --NH2 1139.61
1139.16 759.77 SP-35 Ac-- F I D E E V L Nle $ D V I $ Nle A L D R I
--NH2 1139.98 1139.16 759.77 SP-36 Ac-- F I D E E V L Nle $ L E I $
Nle A L D R I --NH2 1153.86 1153.18 769.12 SP-37 Ac-- F I D E E V L
Nle $ L V E $ Nle A L D R I --NH2 1147.11 1146.17 764.45 SP-38 Ac--
F I D E E V L Nle $ L V I $ E A L D R I --NH2 1146.37 1146.17
764.45 SP-39 Ac-- F I D E E V L Nle $ L V I $ Nle E L D R I --NH2
1167.27 1167.19 778.46 SP-40 Ac-- F I D E E V L Nle $ L V I $ Nle A
E D R I --NH2 1146.92 1146.17 764.45 SP-41 Ac-- F I D E E V L Nle $
L V I $ Nle A L D E I --NH2 1125.55 1124.66 750.11 SP-42 Ac-- F I D
E E V L Nle $ L V I $ Nle A L D R E --NH2 1146.46 1146.17 764.45
SP-43 Ac-- F I D E E V L Nle $ L V I $ Nle A L D R I E --NH2
1203.62 1202.71 802.14 SP-44 Ac-- S I D E E V L Nle $ L V I $ Nle A
L D R I --NH2 1108.72 1108.17 739.11 SP-45 Ac-- F S D E E V L Nle $
L V I $ Nle A L D R I --NH2 1126.02 1125.16 750.44 SP-46 Ac-- F I S
E E V L Nle $ L V I $ Nle A L D R I --NH2 1124.72 1124.19 749.8
SP-47 Ac-- F I D E S V L Nle $ L V I $ Nle A L D R I --NH2 1117.23
1117.18 745.12 SP-48 Ac-- F I D E E S L Nle $ L V I $ Nle A L D R I
--NH2 1133.05 1132.17 755.11 SP-49 Ac-- F I D E E V S Nle $ L V I $
Nle A L D R I --NH2 1126.02 1125.16 750.44 SP-50 Ac-- F I D E E V L
S $ L V I $ Nle A L D R I --NH2 1125.65 1125.16 750.44 SP-51 Ac-- F
I D E E V L Nle $ S V I $ Nle A L D R I --NH2 1125.55 1125.16
750.44 SP-52 Ac-- F I D E E V L Nle $ L S I $ Nle A L D R I --NH2
1132.49 1132.17 755.11 SP-53 Ac-- F I D E E V L Nle $ L V S $ Nle A
L D R I --NH2 1125.65 1125.16 750.44 SP-54 Ac-- F I D E E V L Nle $
L V I $ S A L D R I --NH2 1125.83 1125.16 750.44 SP-55 Ac-- F I D E
E V L Nle $ L V I $ Nle S L D R I --NH2 1146.92 1146.19 764.46
SP-56 Ac-- F I D E E V L Nle $ L V I $ Nle A S D R I --NH2 1126.11
1125.16 750.44 SP-57 Ac-- F I D E E V L Nle $ L V I $ Nle A L S R I
--NH2 1125 1124.19 749.8 SP-58 Ac-- F I D E E V L Nle $ L V I $ Nle
A L D S I --NH2 1104.19 1103.65 736.1 SP-59 Ac-- F I D E E V L Nle
$ L V I $ Nle A L D R S --NH2 1125.83 1125.16 750.44 SP-60 Ac-- F I
D E E V L A $ L V I $ A A L D --NH2 962.19 961.55 641.37 SP-61 Ac--
Dpr I D E E V L Nle $ L V I $ Nle A L D R I --NH2 1108.35 1107.68
738.79 SP-62 Ac-- F I Dpr E E V L Nle $ L V I $ Nle A L D R I --NH2
1124.07 1123.7 749.47 SP-63 Ac-- F I D E Dpr V L Nle $ L V I $ Nle
A L D R I --NH2 1117.32 1116.69 744.8 SP-64 Ac-- F I D E E Dpr L
Nle $ L V I $ Nle A L D R I --NH2 1132.49 1131.68 754.79 SP-65 Ac--
F I D E E V L Nle $ L V Dpr $ Nle A L D R I --NH2 1125 1124.67
750.11 SP-66 Ac-- F I D E E V L Nle $ L V I $ Dpr A L D R I --NH2
1125.46 1124.67 750.11 SP-67 Ac-- F I D E E V L Nle $ L V I $ Nle A
L D Dpr I --NH2 1103.91 1103.16 735.78 SP-68 Ac-- F I D E E V L Nle
$ L V I $ Nle A L D Dpr --NH2 1047.02 1046.62 698.08 SP-69 Ac-- F I
D E Q V L Nle $ L V I $ Nle A L D R I --NH2 1138.6 1137.7 758.8
SP-70 Ac-- F I D E Q V L A $ L V I $ A A L D R I --NH2 1096.6
1095.65 730.77 SP-71 Ac-- F I D E E V pL Nle $ L V I $ Nle A L D R
I --NH2 1145.16 1144.18 763.12 SP-72 Ac-- F I D E E V L Nle $ L pL
I $ Nle A L D R I --NH2 1152.2 1151.18 767.79 SP-73 Ac-- F I D E E
V L Nle $ L V Bpa $ Nle A L D R I --NH2 1208.07 1207.19 805.13
SP-74 Ac-- F I D E E V L Nle $ L V I $ Bpa A L D R I --NH2 1207.51
1207.19 805.13 SP-75 Ac-- F I D E E V L M S L V I E M G L D R I K E
L P E L W L --NH2 1091.01 1636.37 1091.25 SP-76 Ac-- F I D $ E V L
$ S L V I E M G L D R I K E L P E L W L --NH2 1088.14 1631.41
1087.94 SP-77 Ac-- F I D E E $ L M S $ V I E M G L D R I K E L P E
L W L --NH2 1104.59 1655.38 1103.92 SP-78 Ac-- F I D E E V $ M S L
$ I E M G L D R I K E L P E L W L --NH2 1104.13 1655.38 1103.92
SP-79 Ac-- F I D E E V L $ S L V $ E M G L D R I K E L P E L W L
--NH2 1093.53 1639.39 1093.26 SP-80 Ac-- F I D E E V L M S $ V I E
$ G L D R I K E L P E L W L --NH2 1093.73 1639.39 1093.26 SP-81
Ac-- F I D $r8 E V L M S L $ I E M G L D R I K E L P E L W L --NH2
1113.04 1668.42 1112.62 SP-82 Ac-- F I D E $r8 V L M S L V $ E M G
L D R I K E L P E L W L --NH2 1108.81 1661.42 1107.95 SP-83 Ac-- F
I D E E $r8 L M S L V I $ M G L D R I K E L P E L W L --NH2 1112.83
1668.42 1112.62 SP-84 Ac-- F I D E E V $r8 M S L V I E $ G L D R I
K E L P E L W L --NH2 1108.44 1660.42 1107.28 SP-85 Ac-- F I D E E
V L $r8 S L V I E M $ L D R I K E L P E L W L --NH2 1126.36 1688.45
1125.97 SP-86 Ac-- I D E E V L M $ L V I $ M G L D R I K E L P E L
W L --NH2 1053.82 1579.88 1053.59 SP-87 Ac-- D E E V L M $ L V I $
M G L D R I K E L P E L W L --NH2 1016.2 1523.34 1015.9 SP-88 Ac--
E E V L M $ L V I $ M G L D R I K E L P E L W L --NH2 977.75
1465.83 977.55 SP-89 Ac-- E V L M $ L V I $ M G L D R I K E L P E L
W L --NH2 934.71 1401.31 934.54 SP-90 Ac-- F I D E E V L M $ L V I
$ M G L D R I K E L P E L W --NH2 1066.07 1596.88 1064.92 SP-91
Ac-- F I D E E V L M $ L V I $ M G L D R I K E L P E L --NH2
1003.11 1503.84 1002.89 SP-92 Ac-- F I D E E V L M $ L V I $ M G L
D R I K E L P E --NH2 965.28 1447.3 965.2 SP-93 Ac-- F I D E E V L
M $ L V I $ M G L D R I K E L P --NH2 1383.55 1382.77 922.18 SP-94
Ac-- F I D E E V L M $ L V I $ M G L D R I K E L --NH2 1334.71
1334.25 889.83 SP-95 Ac-- F I D E E V L M $ L V I $ M G L D R I K E
--NH2 1277.66 1277.71 852.14 SP-96 Ac-- F I D E E V L M $ L V I $ M
G L D R I K --NH2 1213.2 1213.18 809.12 SP-97 Ac-- F I D E E V L M
$ L V I $ M G L D R I --NH2 SP-98 Ac-- F I D E E V L M $ L V I $ M
G L D --NH2 SP-99 Ac-- F I D E E V L M $ L V I $ M G --NH2 SP-100
Ac-- F I D E E V L M $ L V I $ M A L D R I K E --NH2 SP-101 Ac-- F
I D E E V L M $ L V I $ M A L D --NH2 SP-102 Ac-- F I D E E V L M $
L V I $ M A --NH2 SP-103 Ac-- F I D E E V L M $ L V I $ M A A
--NH2
TABLE-US-00003 TABLE 1b (SEQ ID NOS 120-127, respectively, in order
of appearance) SP # 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
20 21 22 23 24 25 26 27 28 29 SP-104 Ac-- F I D E $ V L M $ L V I E
M G L D R I K E L P E SP-105 Ac-- F I D E $ V L Nle $ L V I E Nle G
L D R I K E L P E SP-106 Ac-- F I D E $ V L Nle $ L V I E Nle A L D
R I K E L P E SP-107 Ac-- F I D E $ V L M $ L V I E M A L D R I K E
L P E SP-108 Ac-- F I D E $ V L M $ L V I E M A L D R I SP-109 Ac--
F I D E $ V L Nle $ L V I E Nle A L D R I SP-110 Ac-- F I D E $ V L
M $ L V I E M A L SP-111 Ac-- F I D E $ V L Nle $ L V I E Nle A L
calculated calculated observed mass mass SP # 30 31 32 masses (M +
2) (M + 3) SP-104 L W L --NH2 1102.75 1653.42 1102.61 SP-105 L W L
--NH2 1091.23 1635.46 1090.64 SP-106 L W L --NH2 1095.86 1642.47
1095.32 SP-107 L W L --NH2 1107.89 1660.43 1107.29 SP-108 --NH2
1156.4 1156.14 771.1 SP-109 --NH2 1138.87 1138.19 759.13 SP-110
--NH2 964.22 964.04 643.03 SP-111 --NH2 946 946.08 631.06
TABLE-US-00004 TABLE 1c SEQ ID NOS 128-165, respectively, in order
of appearance) SP # 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
20 21 22 23 24 25 26 27 28 29 30 31 32 SP-112 Ac-- F I D E $ V L A
$ L V I E M A L D R I K E L P E L W L SP-113 Ac-- F I D E $ V L M $
L V I E M A L D R I K E SP-114 Ac-- F I D E $ V L M $ L V I E M A L
D SP-115 Ac-- F I D E $ V L M $ L V I E M A SP-116 Ac-- F I D E $ V
L M $ L V I E M A A SP-117 Ac-- F I D E $ V L M $ L V I E M A A A
SP-118 Ac-- F I D E $ V L Nle $ L V I E M A L D R I SP-119 Ac-- F I
D E $ V L M $ L V I E Nle A L D R I SP-120 Ac-- F I A E $ V L Nle $
L V I E Nle A L D A I SP-121 Ac-- F I A E $ V L Nle $ L V I A Nle A
L D A I SP-122 Ac-- F I D E $ V L Nle $ L V I A Nle A L SP-123 Ac--
F I A E $ V L Nle $ L V I A Nle A L SP-124 Ac-- F I D E $ V L Nle $
L V I L Nle A L A A Nle SP-125 Ac-- F I D E $ V L Nle $ L V I A Nle
A L D R Nle SP-126 Ac-- F I D E $ V L Nle $ L V I L Nle A Nle A A
Nle SP-127 Ac-- F I D E $ V L Nle $ L V I A Nle A L A A I SP-128
Ac-- F I D E $ V L Nle $ L V I L Nle A L S S I SP-129 Ac-- F I D E
$ V L Nle $ L V I A Nle A L S S I SP-130 5-FAM- Ba F I D E $ V L
Nle $ L V I E Nle A L SP-131 5-FAM- Ba F I D E $ V L Nle $ L V I E
Nle A L D R I SP-132 Ac-- F I D E $ V L Nle $ L V I E Nle A L K
SP-133 Ac-- F I D E $ V L Nle $ L V I E Nle A L K K SP-134 Ac-- K F
I D E $ V L Nle $ L V I E Nle A L SP-135 Ac-- K K F I D E $ V L Nle
$ L V I E Nle A L SP-136 Ac-- K F I D E $ V L Nle $ L V I E Nle A L
K SP-137 Ac-- K K F I D E $ V L Nle $ L V I E Nle A L K K SP-138
Ac-- F I D E $ A L Nle $ L V I E Nle A L SP-139 Ac-- F I D E $ T L
Nle $ L V I E Nle A L SP-140 Ac-- F I D E $ S L Nle $ L V I E Nle A
L SP-141 Ac-- F I D E $ N L Nle $ L V I E Nle A L SP-142 Ac-- F I D
E $ V L Nle $ A V I E Nle A L SP-143 Ac-- F I D E $ V L Nle $ N V I
E Nle A L SP-144 Ac-- F I D E $ V L Nle $ S V I E Nle A L SP-145
Ac-- F I D E $ V L Nle $ L V I E A A L SP-146 Ac-- F I D E $ V L
Nle $ L V I E Q A L SP-147 Ac-- F I D E $ V L Nle $ L V I E S A L
SP-148 Ac-- F I D A $ V L Nle $ L V I E Nle A L SP-149 Ac-- F I D A
$ T L Nle $ L V I E Nle A L SP-150 Ac-- F I D A $ V L Nle $ N V I E
Nle A L SP-151 Ac-- F I D A $ T L Nle $ N V I E Nle A L SP-152 Ac--
F I D E $ V L A $ L V I E Nle A L SP-153 Ac-- F T D E $ V L Nle $ L
V I E Nle A L SP-154 Ac-- F S D E $ V L Nle $ L V I E Nle A L
SP-155 Ac-- F I R E $ V L Nle $ L V I E Nle A L SP-156 Ac-- F I D R
$ V L Nle $ L V I E Nle A L SP-157 Ac-- F I D E $ V L Nle $ L V I R
Nle A L SP-158 Ac-- I D E $ V F Nle $ L V I E Nle A L SP-159 Ac-- D
E $ V F Nle $ L V I E Nle A L SP-160 H-- F I D E $ V F Nle $ L V I
E Nle A L SP-161 Ac-- F I D E $ V F A $ L V I E Nle A L SP-162 Ac--
F I D E $ V F A $ L V I E S A L SP-163 Ac-- F I D E $ V F Nle $ L V
I E A A L SP-164 Ac-- F I N Q $ V F Nle $ L V I Q Nle A L SP-165
Ac-- F I N Q $ V F A $ L V I Q Nle A L SP-166 Ac-- F I N Q $ V F A
$ L V I Q A A L SP-167 Ac-- F I N Q $ V F Nle $ L V I Q A A L
SP-168 Ac-- F I R E $ V F Nle $ L V I E Nle A L SP-169 Ac-- F I R E
$ V F A $ L V I E Nle A L SP-170 Ac-- F I D E $ V F A $ L V I R Nle
A L SP-171 Ac-- F I R E $ V F Nle $ L V I E A A L SP-172 Ac-- F I D
E $ V F Nle $ L V I R A A L SP-173 Dmaac- F I D E $ V F Nle $ L V I
E Nle A L SP-174 Ac-- F I D E $r8 V L M S L V $ E M A L D R I K E
SP-175 Ac-- F I D E $r8 V L M S L V $ E M A L D R I SP-176 Ac-- F I
D E $r8 V L M S L V $ E M A L D SP-177 Ac-- F I D E $r8 V L M S L V
$ E M A L SP-178 Ac-- F I D E $r8 V L M S L V $ E M A A SP-179 Ac--
F I D E $r8 V L M S L V $ E M A A A SP-180 Ac-- L T E $r8 V L M S L
V $ S M A SP-181 Ac-- L T E $r8 V L M S L V $ S A A SP-182 Ac-- L T
E $r8 V L M S L V $ S A A SP-183 Ac-- F I D E $r8 V L A S L V $ E M
G L D R I K E L P E L W L SP-184 Ac-- F I D E $r8 V L A S L V $ E M
G SP-185 Ac-- F I D E $r8 V L Nle S L V $ E M G SP-186 Ac-- F I D E
$r8 V L M S L V $ E Nle G SP-187 Ac-- F I D E $r8 V L M S L V $ E M
G L SP-188 Ac-- F I D E $r8 V L M S L V $ E M G L D SP-189 Ac-- F I
D E $r8 V L M S L V $ E M G L D R SP-190 Ac-- F I D E $r8 V L Nle S
L V $ E Nle A L D R I SP-191 Ac-- F I D E $r8 V L Nle S L V $ A Nle
A L D A I SP-192 Ac-- F I A E $r8 V L Nle S L V $ E Nle A L D A I
SP-193 Ac-- F I A E $r8 V L Nle S L V $ A Nle A L D A I SP-194 Ac--
F I A E $r8 V L Nle S L V $ A Nle A L A A I SP-195 Ac-- F I D E $r8
V L Nle S L V $ E Nle A L SP-196 Ac-- F I D E $r8 V L Nle S L V $ A
Nle A L SP-197 Ac-- F I A E $r8 V L Nle S L V $ E Nle A L SP-198
Ac-- F I A E $r8 V L Nle S L V $ A Nle A L SP-199 Ac-- F I D E E
$r8 L Nle S L V I $ Nle A L SP-200 Ac-- F I D E E $r8 L Nle S L V I
$ Nle A L D R I SP-201 Ac-- F I D E $r5 V L M St L V I $ M G L D R
I K E L P E L W L SP-202 Ac-- F I D E $r5 V L Nle St L V I $ Nle A
L SP-203 Ac-- F I D E $ V L M St L V I $r5 M A SP-204 Ac-- F I D E
$ V L Nle St L V I $r5 Nle A L SP-205 Ac-- F I D E $ V L E St L V I
$r5 Nle A L SP-206 Ac-- F I D E $ R L Nle St L V I $r5 Nle A L
SP-207 Ac-- F I D E $ T L Nle St L V I $r5 Nle A L SP-208 Ac-- F I
D E $ N L Nle St L V I $r5 Nle A L SP-209 Ac-- F I D E $ V L Nle St
R V I $r5 Nle A L SP-210 Ac-- F I D E $ V L Nle St N V I $r5 Nle A
L SP-211 Ac-- F I D E $ V L Nle St L V I $r5 A A L SP-212 Ac-- F I
D E $ V L Nle St L V I $r5 Q A L SP-213 Ac-- F I D E $ V L Nle St L
V I $r5 R A L SP-214 Ac-- F I D A $ T L Nle St S V I $r5 Nle A L
SP-215 Ac-- F I D E $5rn3 V L Nle Sta5 L V I $5n3 Nle A L SP-216
Ac-- F I D E Aib V L M $ L V I $ M A SP-217 Ac-- A I D E E V L M $
L V I $ M A L SP-218 Ac-- F I D A E V L M $ L V I $ M A L SP-219
Ac-- F I D E E V L Nle $ F V I $ Nle A L SP-220 Ac-- F I D E E V L
Nle $ L V I $ Nle A F SP-221 Ac-- F I A E E V L Nle $ L V I $ Nle A
L D A I SP-222 Ac-- F I A E A V L Nle $ L V I $ Nle A L D A I
SP-223 Ac-- F I A E A V L Nle $ L V I $ Nle A L A A I SP-224 Ac-- F
I D E E V L Nle $ L V I $ M A L SP-225 Ac-- F I D E E V L M $ L V I
$ Nle A L SP-226 Ac-- F I D E E V L M $ L V I $ M A F SP-227 Ac-- F
I D E E V L M $ L V I $ M A Nle SP-228 Ac-- F I D F4cooh E V L M $
L V I $ M A F SP-229 Ac-- F I D E E V L M $ L V I $ M A L L SP-230
Ac-- F I S E E V L M $ L V I $ M A L SP-231 Ac-- F I T E E V L M $
L V I $ M A L SP-232 Ac-- F I N E E V L M $ L V I $ M A L SP-233
Ac-- F I D Q E V L M $ L V I $ M A L SP-234 Ac-- F I D E Q V L M $
L V I $ M A L SP-235 Ac-- F I D E N V L M $ L V I $ M A L SP-236
Ac-- F I D E E V L M $ F V I $ M A L SP-237 Ac-- F I D E E V L M $
L V I $ M A Cba SP-238 Ac-- F I D E S V L M $ L V I $ M A L SP-239
Ac-- F I D E T V L M $ L V I $ M A L SP-240 5-FAM- Ba F I D E E V L
Nle $ L V I $ Nle A L SP-241 Ac-- F I D E E V L Nle $r5 L V I $r5
Nle A L SP-242 Ac-- F I D E E V F Nle $ L V I $ Nle A L L SP-243
Ac-- I D E E V F Nle $ L V I $ Nle A L L SP-244 Ac-- D E E V F Nle
$ L V I $ Nle A L L SP-245 H-- F I D E E V F Nle $ L V I $ Nle A L
L SP-246 Ac-- F I D E E V F A $ L V I $ Nle A L L SP-247 Ac-- F I D
E E V F Nle $ L V I $ A A L L SP-248 Ac-- F I N Q Q V F Nle $ L V I
$ Nle A L L SP-249 Ac-- F I D E A V F Nle $ L V I $ Nle A L L
SP-250 Ac-- F I D Q A V F Nle $ L V I $ Nle A L L SP-251 Ac-- F I D
Q A V F Nle $ N V I $ Nle A L L SP-252 Ac-- F I D Q A V F Nle $ S V
I $ Nle A L L SP-253 Ac-- F I D Q A V F Nle $ R V I $ Nle A L L
SP-254 Ac-- F I D Q A V F Nle $ H V I $ Nle A L L SP-255 Ac-- F I D
Q A V F Nle $ L V I $ Q A L L SP-256 Ac-- F I D Q A V F Nle $ L V I
$ R A L L SP-257 Ac-- F I D Q A V F Nle $ L V I $ S A L L SP-258
Ac-- F I D Q A V F Nle $ L V I $ H A L L SP-259 Ac-- F I D Q A V F
Nle $ N V I $ H A L L SP-260 Ac-- F I D Q A V F Nle $ H V I $ Q A L
L SP-261 Ac-- F I D Q A V F Nle $ S V I $ R A L L SP-262 Ac-- F I D
Q A V F Nle $ R V I $ S A L L SP-263 5-FAM- Ba F I D E E V L Nle $
L V I $ Nle A L D R I SP-264 Ac-- F I D E E V F M $ L V I $ M A L D
R I SP-265 Ac-- F I D E E V F Nle $ L V I $ Nle A L D R I SP-266
Ac-- F I D E A V L M $ L V I $ M A L D R I SP-267 Ac-- F I D Q E V
F M $ L V I $ M A L D R I SP-268 Ac-- F I D Q A V F M $ L V I $ M A
L D R I SP-269 Ac-- F I D Q E V F Nle $ L V I $ Nle A L D R I
SP-270 Ac-- F I D Q A V L M $ L V I $ M A L N R I SP-271 Ac-- F I N
Q A V L M $ L V I $ M A L D R I SP-272 Ac-- F I N Q A V L M $ L V I
$ M A L N R I SP-273 Ac-- F I D Q A V L Nle $ L V I $ Nle A L N R I
SP-274 Ac-- F I D E E F L M $ L V I $ M A L D R I SP-275 Ac-- F I D
E E F F M $ L V I $ M A L D R I SP-276 Ac-- F I D E E V F M $ L H I
$ M A L D R I SP-277 Ac-- F I D E E V F M $ Y V I $ M A L D R I
SP-278 Ac-- F I D E E V L M $ L H I $ M A L D R I SP-279 Ac-- F I D
E E V L M $ Y V I $ M A L D R I SP-280 Ac-- F I D E E V I M $ L V I
$ M A V D R I SP-281 Ac-- F I D E E V L M $ L V I $ M A L D R
SP-282 Ac-- F I D E Q V L M $ L V I $ M A L D R I SP-283 Ac-- F I D
E K V L M $ L V I $ M A L D R I SP-284 Ac-- F I D E H V L M $ L V I
$ M A L D R I SP-285 Ac-- F I N E K V L M $ L V I $ M A L D R I
SP-286 Ac-- F I N E H V L M $ L V I $ M A L D R I SP-287 Ac-- F I D
E E V L M $ L V I $ M A L S R SP-288 Ac-- F I N E K V L M $ L V I $
M A L S R SP-289 Ac-- F I N Q A V L Nle $ L V I $ Nle A L D R I
SP-290 Ac-- V I D T D F I D E E V L A $ L V I $ A A L D R I SP-291
Ac-- V F D T D F I D E Q V L A $ L V I $ A A L D R I SP-292 Ac-- V
I D T D F I D E Q V L A $ L V I $ A A L D A SP-293 Ac-- V I R T D F
I D E Q V L A $ Y V I $ A A L D A SP-294 Ac-- F I D E E V L Nle $/
L V I $/ Nle A L D R I SP-295 Ac-- F I D E E V L Nle S L V I E Nle
A L D R I SP-296 Ac-- F I D E E V L Nle $r5 L V I $r5 Nle A L D R I
SP-297 5-TAMRA- Ba F I D E E V L Nle $ L V I $ Nle A L D R I SP-298
Ac-- F I D E E V L MO $ L V I $ Nle A L D R I SP-299 Ac-- F I D E E
V L Nle $ L V I $ MO A L D R I SP-300 Ac-- F I D E E V L MO2 $ L V
I $ Nle A L D R I SP-301 Ac-- F I D E E V L Nle $ L V I $ MO2 A L D
R I calculated calculated observed mass mass SP # masses (M + 2) (M
+ 3) SP-112 --NH2 1087.49 1630.43 1087.29 SP-113 --NH2 1285.22
1284.71 856.81 SP-114 --NH2 1022.6 1021.55 681.37 SP-115 --NH2
908.54 907.5 605.33 SP-116 --NH2 944.06 943.01 629.01 SP-117 --NH2
979.12 978.53 652.69 SP-118 --NH2 1147.61 1147.17 765.11 SP-119
--NH2 1147.05 1147.17 765.11 SP-120 --NH2 1073.81 1073.66 716.11
SP-121 --NH2 1044.7 1044.66 696.77 SP-122 --NH2 917.05 917.08
611.72 SP-123 --NH2 895.04 895.08 597.06 SP-124 --NH2 1065.8
1065.68 710.79 SP-125 --NH2 1109.04 1109.19 739.79 SP-126 --NH2
1065.85 1065.68 710.79 SP-127 --NH2 1044.77 1044.66 696.77 SP-128
--NH2 1082.04 1081.68 721.45 SP-129 --NH2 1060.49 1060.65 707.44
SP-130 --NH2 1139.84 1139.62 760.08 SP-131 --NH2 888.1 1331.73
888.15 SP-132 --NH2 1009.99 1010.13 673.75 SP-133 --NH2 1073.99
1074.18 716.45 SP-134 --NH2 1009.99 1010.13 673.75 SP-135 --NH2
1073.99 1074.18 716.45 SP-136 --NH2 1073.99 1074.18 716.45 SP-137
--NH2 1201.99 1202.27 801.85 SP-138 --NH2 931.94 932.07 621.71
SP-139 --NH2 946.92 947.07 631.72 SP-140 --NH2 939.89 940.06 627.04
SP-141 --NH2 953.49 953.57 636.05 SP-142 --NH2 924.91 925.06 617.04
SP-143 --NH2 946.46 946.56 631.38 SP-144 --NH2 932.96 933.06 622.37
SP-145 --NH2 924.91 925.06 617.04 SP-146 --NH2 953.4 953.57 636.05
SP-147 --NH2 932.96 933.06 622.37 SP-148 --NH2 917.79 917.08 611.72
SP-149 --NH2 918.44 918.07 612.38 SP-150 --NH2 917.88 917.56 612.04
SP-151 --NH2 918.9 918.55 612.7 SP-152 --NH2 925.01 925.06 617.04
SP-153 --NH2 940.17 940.06 627.04 SP-154 --NH2 933.14 933.06 622.37
SP-155 --NH2 966.71 966.62 644.75 SP-156 --NH2 959.5 959.61
640.08
SP-157 --NH2 959.5 959.61 640.08 SP-158 --NH2 889.85 889.54 593.36
SP-159 --NH2 833.33 833 555.67 SP-160 --NH2 942.39 942.07 628.38
SP-161 --NH2 942.39 942.05 628.37 SP-162 --NH2 929.44 929.02 619.68
SP-163 --NH2 942.39 942.05 628.37 SP-164 --NH2 961.91 961.6 641.4
SP-165 --NH2 940.91 940.57 627.38 SP-166 --NH2 919.92 919.55 613.37
SP-167 --NH2 940.91 940.57 627.38 SP-168 --NH2 983.94 983.61 656.08
SP-169 --NH2 962.93 962.59 642.06 SP-170 --NH2 955.9 955.58 637.39
SP-171 --NH2 962.93 962.59 642.06 SP-172 --NH2 955.99 955.58 637.39
SP-173 --NH2 984.66 984.6 656.73 SP-174 --NH2 1293.63 1292.71
862.14 SP-175 --NH2 1164.07 1164.14 776.43 SP-176 --NH2 1030.27
1029.55 686.7 SP-177 --NH2 972.17 972.04 648.36 SP-178 --NH2 951.28
951.01 634.34 SP-179 --NH2 987.07 986.53 658.02 SP-180 --NH2 814.46
813.96 542.98 SP-181 --NH2 784.49 783.96 522.98 SP-182 --NH2 793.55
792.98 528.99 SP-183 --NH2 1088.14 1631.41 1087.94 SP-184 --NH2
879.31 878.48 585.99 SP-185 --NH2 900.4 899.51 600.01 SP-186 --NH2
900.49 899.51 600.01 SP-187 --NH2 965.34 965.03 643.69 SP-188 --NH2
1023.06 1022.54 682.03 SP-189 --NH2 1101.04 1100.59 734.06 SP-190
--NH2 1146.31 1146.19 764.46 SP-191 --NH2 1074.55 1074.65 716.77
SP-192 --NH2 1081.48 1081.66 721.44 SP-193 --NH2 1052.54 1052.66
702.11 SP-194 --NH2 1030.8 1030.66 687.44 SP-195 --NH2 954.04
954.08 636.39 SP-196 --NH2 925.01 925.08 617.05 SP-197 --NH2 932.31
932.08 621.72 SP-198 --NH2 903.27 903.08 602.39 SP-199 --NH2 960.98
961.09 641.06 SP-200 --NH2 1152.97 1153.19 769.13 SP-201 --NH2
1115.75 1671.46 1114.64 SP-202 --NH2 964.03 964.12 643.08 SP-203
--NH2 926.02 925.53 617.36 SP-204 --NH2 964.12 964.12 643.08 SP-205
--NH2 971.99 972.1 648.4 SP-206 --NH2 992.42 992.63 662.09 SP-207
--NH2 965.23 965.11 643.74 SP-208 --NH2 971.52 971.61 648.07 SP-209
--NH2 985.49 985.63 957.42 SP-210 --NH2 964.59 964.6 643.4 SP-211
--NH2 943.32 943.09 629.06 SP-212 --NH2 971.43 971.61 648.07 SP-213
--NH2 985.49 985.63 657.42 SP-214 --NH2 923.9 923.08 615.72 SP-215
--NH2 1005.58 1005.12 670.41 SP-216 --NH2 886.89 885.5 590.67
SP-217 --NH2 925.93 926.02 617.68 SP-218 --NH2 935.2 935.04 623.69
SP-219 --NH2 963.29 963.07 642.38 SP-220 --NH2 963.01 963.07 642.38
SP-221 --NH2 1073.99 1073.66 716.11 SP-222 --NH2 1044.95 1044.66
696.77 SP-223 --NH2 1022.57 1022.66 682.11 SP-224 --NH2 954.97
955.06 637.04 SP-225 --NH2 955.34 955.06 637.04 SP-226 --NH2 980.86
981.03 654.36 SP-227 --NH2 964.22 964.04 943.03 SP-228 --NH2
1012.21 1012.04 675.03 SP-229 --NH2 1020.44 1020.58 680.72 SP-230
--NH2 494.98 950.04 633.7 SP-231 --NH2 956.91 957.05 638.37 SP-232
--NH2 963.38 963.55 642.7 SP-233 --NH2 963.48 963.55 642.7 SP-234
--NH2 963.48 963.55 642.7 SP-235 --NH2 956.73 956.54 638.03 SP-236
--NH2 981.14 981.03 654.36 SP-237 --NH2 970.41 970.04 647.03 SP-238
--NH2 942.95 943.03 629.02 SP-239 --NH2 949.98 950.04 633.7 SP-240
--NH2 1139.84 1139.62 760.08 SP-241 --NH2 946.28 946.08 631.06
SP-242 --NH2 1020.19 1019.62 680.08 SP-243 --NH2 946.37 946.08
631.06 SP-244 --NH2 889.85 889.54 593.36 SP-245 --NH2 998.91 998.61
666.08 SP-246 --NH2 998.91 998.59 666.06 SP-247 --NH2 998.91 998.59
666.06 SP-248 --NH2 1018.43 1018.14 679.1 SP-249 --NH2 990.96
990.61 660.74 SP-250 --NH2 990.4 990.12 660.42 SP-251 --NH2 990.96
990.6 660.74 SP-252 --NH2 977.36 977.1 651.73 SP-253 --NH2 1011.96
1011.63 674.75 SP-254 --NH2 1002.43 1002.11 668.41 SP-255 --NH2
997.9 997.61 665.41 SP-256 --NH2 1011.96 1011.63 674.75 SP-257
--NH2 977.45 977.1 651.73 SP-258 --NH2 1002.43 1002.11 668.41
SP-259 --NH2 1002.89 1002.59 668.73 SP-260 --NH2 1009.92 1009.6
673.4 SP-261 --NH2 998.91 998.6 666.07 SP-262 --NH2 998.91 998.6
666.07 SP-263 --NH2 888.56 1331.73 888.15 SP-264 --NH2 1173.66
1173.14 782.43 SP-265 --NH2 1155.53 1155.18 770.46 SP-266 --NH2
1127.87 1127.14 751.76 SP-267 --NH2 1173.1 1172.64 782.1 SP-268
--NH2 1144.24 1143.64 762.76 SP-269 --NH2 1155.06 1154.69 770.13
SP-270 --NH2 1126.48 1126.16 751.11 SP-271 --NH2 1126.39 1126.16
751.11 SP-272 --NH2 1126.2 1125.67 750.78 SP-273 --NH2 1108.53
1108.2 739.14 SP-274 --NH2 1180.69 1180.14 787.1 SP-275 --NH2
1197.34 1197.14 798.43 SP-276 --NH2 1192.8 1192.13 795.09 SP-277
--NH2 1198.35 1198.13 799.09 SP-278 --NH2 1175.6 1175.14 783.76
SP-279 --NH2 1181.8 1181.13 787.76 SP-280 --NH2 1149.33 1149.14
766.43 SP-281 --NH2 1099.84 1099.6 733.4 SP-282 --NH2 1155.94
1155.65 770.77 SP-283 --NH2 1156.12 115.67 770.78 SP-284 --NH2
1160.8 1160.15 773.77 SP-285 --NH2 1155.85 1155.18 770.45 SP-286
--NH2 1159.9 1159.66 773.44 SP-287 --NH2 1086.09 1085.6 724.07
SP-288 --NH2 1085.01 1084.64 723.43 SP-289 --NH2 1108.44 1108.2
739.14 SP-290 --NH2 1368.56 1367.77 912.18 SP-291 --NH2 1385.12
1384.27 923.18 SP-292 --NH2 1269.12 1268.2 845.8 SP-293 --NH2
1314.63 1313.73 876.15 SP-294 --NH2 1152.75 1152.2 768.47 SP-295
--NH2 1121.48 1121.14 747.76 SP-296 --NH2 1138.5 1138.19 759.13
SP-297 --NH2 1358.94 1359.28 906.52 SP-298 --NH2 1155.62 1155.16
770.45 SP-299 --NH2 1155.62 1155.16 770.45 SP-300 --NH2 1163.3
1163.16 775.78 SP-301 --NH2 1164.04 1163.16 775.78
TABLE-US-00005 TABLE 2 SEQ ID NOS 318-389, respectively, in order
of appearance) SP # 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 SP-302 Ac-- L
L Q $ E E L $ R A L D Q V N I D E E V $ Nle S L $ I E Nle G SP-303
Ac-- L L Q G E $ L L R $ L D Q V N I D E E V $ Nle S L $ I E Nle G
SP-304 Ac-- L L Q G E E L $ R A L $ Q V N I D E E V $ Nle S L $ I E
Nle G SP-305 Ac-- L L Q G E $r8 L L R A L D $ V N I D E E V $ Nle S
L $ I E Nle G SP-306 Ac-- L L Q $ E E L $ R A L D Q V N I D E E V L
Nle $ L V I $ Nle G SP-307 Ac-- L L Q G E $ L L R $ L D Q V N I D E
E V L Nle $ L V I $ Nle G SP-308 Ac-- L L Q G E E L $ R A L $ Q V N
I D E E V L Nle $ L V I $ Nle G SP-309 Ac-- L L Q G E $r8 L L R A L
D $ V N I D E E V L Nle $ L V I $ Nle G SP-310 Ac-- L L Q $ E E L $
R A L D Q V N I D E $r8 V L Nle S L V $ E Nle G SP-311 Ac-- L L Q G
E $ L L R $ L D Q V N I D E $r8 V L Nle S L V $ E Nle G SP-312 Ac--
L L Q G E E L $ R A L $ Q V N I D E $r8 V L Nle S L V $ E Nle G
SP-313 Ac-- L L Q G E $r8 L L R A L D $ V N I D E $r8 V L Nle S L V
$ E Nle G SP-314 Ac-- L L Q $ E E L $ R A L D Q V N I D E E V $r8
Nle S L V I E $ G SP-315 Ac-- L L Q G E $ L L R $ L D Q V N I D E E
V $r8 Nle S L V I E $ G SP-316 Ac-- L L Q G E E L $ R A L $ Q V N I
D E E V $r8 Nle S L V I E $ G SP-317 Ac-- L L Q G E $r8 L L R A L D
$ V N I D E E V $r8 Nle S L V I E $ G SP-318 Ac-- L L Q G E E L L R
A L D Q V N I D E $ V L M $ L V I E M SP-319 Ac-- L L Q G E E L L R
A L D Q V N I D E E V L M $ L V I $ M SP-320 Ac-- L L Q G E E L L R
A L D Q V N I D E $r8 V L M S L V $ E M SP-321 Ac-- F I D E E V L M
$ L V I $ M G L D R I K E L P SP-322 Ac-- F I D E $ V L M $ L V I E
M G L D R I K E L P SP-323 Ac-- F I D E $r8 V L M S L V $ E M G L D
R I K E L P SP-324 Ac-- F I D E E $r8 L M S L V I $ M G L D R I K E
L P SP-325 Ac-- L L Q $ E E L $ R A L D Q V N I D E $ V L Nle $ L V
I E Nle G SP-326 Ac-- L L Q G E $ L L R $ L D Q V N I D E $ V L Nle
$ L V I E Nle G SP-327 Ac-- L L Q G E E L $ R A L $ Q V N I D E $ V
L Nle $ L V I E Nle G SP-328 Ac-- L L Q G E $r8 L L R A L D $ V N I
D E $ V L Nle $ L V I E Nle G SP-329 Ac-- L L Q $ E E L $ R A L D Q
V N I D E E $r8 L Nle S L V I $ Nle G SP-330 Ac-- L L Q G E $ L L R
$ L D Q V N I D E E $r8 L Nle S L V I $ Nle G SP-331 Ac-- L L Q G E
E L $ R A L $ Q V N I D E E $r8 L Nle S L V I $ Nle G SP-332 Ac-- L
L Q G E $r8 L L R A L D $ V N I D E E $r8 L Nle S L V I $ Nle G
SP-333 Ac-- L L Q G E E L L R A L D Q V N I D E E V L Nle S L V I E
Nle SP-334 Ac-- L L Q G E E L L R A L D Q V N I D E $ V L Nle $ L V
I E Nle SP-335 Ac-- L L Q G E E L L R A L D Q V N I D E E V L Nle $
L V I $ Nle SP-336 Ac-- L L Q G E E L L R A L D Q V N I D E $r8 V L
Nle S L V $ E Nle SP-337 Ac-- L L Q G E E L L R A L D Q V N I D E E
$r8 L Nle S L V I E Nle SP-338 Ac-- L L Q G $ E L L $ A L D Q V N I
D E E V L Nle $ L V I E Nle G SP-339 Ac-- L L Q G E E $ L R A $ D Q
V N I D E E V L Nle $ L V I E Nle G SP-340 Ac-- L L Q G E E L L $ A
L D $ V N I D E E V L Nle $ L V I E Nle G SP-341 Ac-- L L Q $r8 E E
L L R A $ D Q V N I D E E V L Nle $ L V I E Nle G SP-342 Ac-- L L Q
G $r8 E L L R A L $ Q V N I D E E V L Nle $ L V I E Nle G SP-343
Ac-- L L Q G $ E L L $ A L D Q V N I D E $r8 V L Nle S L V $ E Nle
G SP-344 Ac-- L L Q G E E $ L R A $ D Q V N I D E $r8 V L Nle S L V
$ E Nle G SP-345 Ac-- L L Q $r8 E E L L R A $ D Q V N I D E $r8 V L
Nle S L V $ E Nle G SP-346 Ac-- L L Q G E $r8 L L R A L D $ V N I D
A E V L Nle $ L V I $ Nle SP-347 Ac-- L L Q G E $r8 L L R A L D $ V
N I D E A V L Nle $ L V I $ Nle SP-348 Ac-- L L Q G A $r8 L L R A L
A $ V N I A A A V L Nle $ L V I $ Nle SP-349 Ac-- L L Q G E $r8 L L
R A L D $ V N I A E E V L Nle $ L V I $ Nle SP-350 Ac-- L L Q A E
$r8 L L R A L D $ V N I D E E V L Nle $ L V I $ Nle SP-351 Ac-- E
$r8 L L R A L D $ V N I D E E V L Nle $ L V I $ Nle SP-352 Ac-- L L
Q G E $r8 L L R A L D $ A A A A E $r8 V L Nle S L V $ E Nle SP-353
Ac-- L L Q G A $r8 L L R A L D $ V N I D E $r8 V L Nle S L V $ E
Nle SP-354 Ac-- L L Q G E $r8 L L R A L A $ V N I D E $r8 V L Nle S
L V $ E Nle SP-355 Ac-- L L Q G E $r8 L L R A L D $ V N I A E $r8 V
L Nle S L V $ E Nle SP-356 Ac-- L L Q G A $r8 L L R A L A $ V N I A
A $r8 V L Nle S L V $ E Nle SP-357 Ac-- L L Q A E $r8 L L R A L D $
V N I D E $r8 V L Nle S L V $ E Nle SP-358 Ac-- E $r8 L L R A L D $
V N I D E $r8 V L Nle S L V $ E Nle SP-359 Ac-- L L Q G E E L $ R A
L $ Q A A A A E $r8 V L Nle S L V $ E Nle SP-360 Ac-- L L Q G A E L
$ R A L $ Q V N I D E $r8 V L Nle S L V $ E Nle SP-361 Ac-- L L Q G
E A L $ R A L $ Q V N I D E $r8 V L Nle S L V $ E Nle SP-362 Ac-- L
L Q G E E L $ R A L $ Q V N I D A $r8 V L Nle S L V $ E Nle SP-363
Ac-- L L Q G E E L $ R A L $ Q V N I D E $r8 V L Nle S L V $ A Nle
SP-364 Ac-- L L Q G A A L $ R A L $ Q V N I A A $r8 V L Nle S L V $
A Nle SP-365 Ac-- L L Q G E E L $ R A L $ Q V N I A E $r8 V L Nle S
L V $ E Nle SP-366 Ac-- E E L $ R A L $ Q V N I D E $r8 V L Nle S L
V $ E Nle SP-367 Ac-- L L Q A E E L $ R A L $ Q V N I D E $r8 V L
Nle S L V $ E Nle SP-368 5-FAM- Ba L L Q G E $r8 L L R A L D $ V N
I D E E V L Nle $ L V I $ Nle A L SP-369 Ac-- L L Q G E $r8 L L R A
L D $ V N I D E E V $ Nle S L $ I E Nle A L SP-370 Ac-- L L Q $ E E
L $ R A L D Q V N I D E E V L Nle $ L V I $ Nle A L SP-371 Ac-- L L
Q G E E L $ R A L $ Q V N I D E E V L Nle $ L V I $ Nle A L SP-372
Ac-- L L Q G E $r8 L L R A L D $ V N I D E E V L Nle $ L V I $ Nle
A L SP-373 Ac-- L L Q G E $r8 L L R A L D $ V N I D E $r8 V L Nle S
L V $ E Nle A L calculated calculated observed mass mass SP # 38 39
40 41 42 43 44 45 46 47 48 masses (M + 2) (M + 3) SP-302 --NH2
1132.35 1697 1131.6 SP-303 --NH2 1122.36 1682 1121.6 SP-304 --NH2
1112.93 1668 1112.3 SP-305 --NH2 1117 1674.5 1116.7 SP-306 --NH2
1131.05 1695 1130.3 SP-307 --NH2 1120.84 1680 1120.3 SP-308 --NH2
1111.63 1666 1111 SP-309 --NH2 1116.21 1672.5 1115.4 SP-310 --NH2
1136.05 1703 1135.7 SP-311 --NH2 1126.43 1688 1125.7 SP-312 --NH2
1116.26 1674 1116.3 SP-313 --NH2 1121.34 1680.5 1120.7 SP-314 --NH2
1141.69 1711 1141 SP-315 --NH2 1131.33 1696 1131 SP-316 --NH2
1122.08 1682 1121.6 SP-317 --NH2 1126.61 1688.5 1126 SP-318 --NH2
1097.52 1644.4 1096.6 SP-319 --NH2 1097.8 1644.4 1096.6 SP-320
--NH2 1103.17 1652.4 1101.9 SP-321 Q L T $ Y D Abu $ V N A --NH2
1336.37 2002.6 1335.4 SP-322 Q L T $ Y D Abu $ V N A --NH2 1336.83
2002.6 1335.4 SP-323 Q L T $ Y D Abu $ V N A --NH2 1341.83 2010.6
1340.7 SP-324 Q L T $ Y D Abu $ V N A --NH2 1346.82 2017.6 1345.4
SP-325 --NH2 1131.38 1695 1130.3 SP-326 --NH2 1121.11 1680 1120.3
SP-327 --NH2 1111.77 1666 1111 SP-328 --NH2 1115.52 1672.5 1115.4
SP-329 --NH2 1140.58 1710 1140.3 SP-330 --NH2 1130.87 1695 1130.3
SP-331 --NH2 1121.53 1681 1121 SP-332 --NH2 1125.74 1687.5 1125.4
SP-333 --NH2 1073.44 1609.4 1073.3 SP-334 --NH2 1084.72 1626.5
1084.6 SP-335 --NH2 1084.81 1626.5 1084.6 SP-336 --NH2 1090.08
1634.5 1090 SP-337 --NH2 1094.71 1641.5 1094.6 SP-338 --NH2 1092.03
1637.5 1092 SP-339 --NH2 1111.72 1667 1111.6 SP-340 --NH2 1092.21
1638 1092.3 SP-341 --NH2 1144.46 1716 1144.3 SP-342 --NH2 1119.77
1679 1119.7 SP-343 --NH2 1097.48 1645.5 1097.3 SP-344 --NH2 1117.09
1675 1117 SP-345 --NH2 1149.92 1724 1149.7 SP-346 --NH2 1077.73
1615 1077 SP-347 --NH2 1077.54 1615 1077 SP-348 --NH2 1010.2 1513
1009 SP-349 --NH2 1082.17 1622 1081.7 SP-350 --NH2 1101.87 1651
1101 SP-351 --NH2 960.06 1438.4 959.26 SP-352 --NH2 1049.89 1573.5
1049.3 SP-353 --NH2 1083.46 1623 1082.3 SP-354 --NH2 1087.53 1630
1087 SP-355 --NH2 1087.9 1630 1087 SP-356 --NH2 1034.81 1550 1033.7
SP-357 --NH2 1107.42 1659 1106.3 SP-358 --NH2 965.52 1446.4 964.59
SP-359 --NH2 1045.81 1566.9 1045 SP-360 --NH2 1078.93 1616.5 1078
SP-361 --NH2 1078.47 1616.5 1078 SP-362 --NH2 1078.84 1616.5 1078
SP-363 --NH2 1078.56 1616.5 1078 SP-364 --NH2 1005.85 1507.5 1005.3
SP-365 --NH2 1083.83 1623.5 1082.7 SP-366 --NH2 961.08 1439.9
960.23 SP-367 --NH2 1103.17 1652.5 1102 SP-368 --NH2 1286.71 1929.6
1286.7 SP-369 --NH2 1159.72 1738 1159 SP-370 --NH2 1172.86 1758.5
1172.7 SP-371 --NH2 1153.44 1729.5 1153.4 SP-372 --NH2 1157.88
1736.1 1157.7 SP-373 --NH2 1163.05 1744.1 1163
[0133] In the sequences shown above and elsewhere, the following
abbreviations are used: amino acids represented as "$" are alpha-Me
S5-pentenyl-alanine olefin amino acids connected by an all-carbon i
to i+4 crosslinker comprising one double bond. Amino acids
represented as "$r8" are alpha-Me R8-octenyl-alanine olefin amino
acids connected by an all-carbon i to i+7 crosslinker comprising
one double bond. "Ne" represents norleucine. "Aib" represents
2-aminoisobutyric acid. "Ac" represents acetyl. Amino acids
represented as "Ba" are beta-alanine. Amino acids designated as
"Cba" represent cyclobutyl alanine. Amino acids designated as
"F4cooh" represent 4-carboxy phenylalanine. Amino acids represented
as "$1" are alpha-Me S5-pentenyl-alanine olefin amino acids that
are not connected by any crosslinker. "$r5" are alpha-Me
R5-pentenyl-alanine olefin amino acids connected by an all-carbon
comprising one double bond. Amino acids represented as "$/r5" are
alpha-Me R5-pentenyl-alanine olefin amino acids that are not
connected by any crosslinker. Amino acids represented as "St" are
amino acids comprising two pentenyl-alanine olefin side chains,
each of which is crosslinked to another amino acid as indicated.
Amino acids represented as "Sta5" are amino acids comprising two
R5-pentenyl-alanine olefin side chains, each of which is
crosslinked to another amino acid as indicated. Other amino acids
are described below.
##STR00041##
[0134] Additionally, "Bpa" represents 4-benzyoyl-phenylalanine, a
photoreactive amino acid analog useful in making photoreactive
stapled peptides that covalently capture their physiologic targets,
as described for example Braun et al. Chem Biol. 2010 Dec. 22;
17(12):1325-33 and Leshchiner et al. Proc Nal Acad Sci USA. 2013
Feb. 12.
[0135] Amino acids which are used in the formation of triazole
cross-linkers are represented according to the legend indicated
below. Stereochemistry at the alpha position of each amino acid is
S unless otherwise indicated. For azide amino acids, the number of
carbon atoms indicated refers to the number of methylene units
between the alpha carbon and the terminal azide. For alkyne amino
acids, the number of carbon atoms indicated is the number of
methylene units between the alpha position and the triazole moiety
plus the two carbon atoms within the triazole group derived from
the alkyne.
TABLE-US-00006 $5rn3 Alpha-Me R-azide 1,5 triazole (3 carbon) $5a5
Alpha-Me alkyne 1,5 triazole (5 carbon) $5n3 Alpha-Me azide 1,5
triazole (3 carbon) $4rn6 Alpha-Me R-azide 1,4 triazole (6 carbon)
$4a5 Alpha-Me alkyne 1,4 triazole (5 carbon)
[0136] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is at least about 60% identical to an amino acid sequence selected
from the group consisting of the amino acid sequences in Tables 1a,
1b and 1c, further comprising at least one macrocycle-forming
linker, wherein the macrocycle-forming linker connects a first
amino acid to a second amino acid. In some embodiments, the
peptidomimetic macrocycle comprises an amino acid sequence which is
at least about 65%, 70%, 75%, 80%, 85%, 90% or 95% an amino acid
sequence identical to selected from the group consisting of the
amino acid sequences in Tables 1a, 1b and 1c. In some embodiments,
the peptidomimetic macrocycle comprises an amino acid sequence
selected from the group consisting of the amino acid sequences in
Tables 1a, 1b and 1c. In some embodiments, a macrocycle-forming
linker of the peptidomimetic macrocycle of the invention connects
one of the following pairs of amino acids: 9 and 13, 9 and 16, 10
and 14, 10 and 17, 11 and 15, 11 and 18, 12 and 16, 12 and 19, 13
and 17, 13 and 20, 14 and 18, and 15 and 19. In some embodiments,
the macrocycle-forming linker connects amino acids 10 and 14. In
some embodiments, the macrocycle-forming linker connects amino
acids 14 and 18.
[0137] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is at least about 60% identical to an amino acid sequence selected
from the group consisting of the amino acid sequences in Table 2,
further comprising at least one macrocycle-forming linker, wherein
the macrocycle-forming linker connects a first amino acid to a
second amino acid. In some embodiments, the peptidomimetic
macrocycle comprises an amino acid sequence which is at least about
65%, 70%, 75%, 80%, 85%, 90% or 95% identical to an amino acid
sequence selected from the group consisting of the amino acid
sequences in Table 2. In some embodiments, the peptidomimetic
macrocycle comprises an amino acid sequence selected from the group
consisting of the amino acid sequences in Table 2. In some
embodiments, one or more macrocycle-forming linkers of the
peptidomimetic macrocycle of the invention connect one or more of
the following pairs of amino acids: 4 and 8, 4 and 11, 5 and 9, 5
and 12, 6 and 10, 6 and 13, 7 and 11, 8 and 12, 9 and 13, 19 and
23, 19 and 26, 20 and 27, 21 and 25, 21 and 28, 23 and 27, and 41
and 45. In some embodiments, the peptidomimetic macrocycle comprise
two macrocycle-forming linkers. In some embodiments, the
macrocycle-forming linkers connect amino acids 6 and 13 and amino
acids 23 and 27. In some embodiments, the macrocycle-forming
linkers connect amino acids 8 and 12 and amino acids 19 and 26. In
some embodiments, the macrocycle-forming linkers connect amino
acids 8 and 12 and amino acids 23 and 27. In some embodiments, the
macrocycle-forming linkers connect amino acids 23 and 27 and amino
acids 41 and 45.
[0138] In some embodiments, a peptidomimetic macrocycle of the
invention comprises a helix, for example an .alpha.-helix. In some
embodiments, a peptidomimetic macrocycle of the invention comprises
an .alpha.,.alpha.-disubstituted amino acid. In some embodiments,
each amino acid connected by the macrocycle-forming linker is an
.alpha.,.alpha.-disubstituted amino acid.
[0139] In some embodiments, a peptidomimetic macrocycle of the
invention has Formula (I):
##STR00042##
wherein: each A, C, D, and E is independently an amino acid
(including natural or non-natural amino acids and amino acid
analogs) and the terminal D and E independently optionally include
a capping group, B is an amino acid (including natural or
non-natural amino acids and amino acid analogs)
##STR00043##
[--NH-L.sub.3-CO--], [--NH-L.sub.3-SO.sub.2--], or [--NH-L.sub.3-],
wherein A, B, C, D, and E, taken together with the crosslinked
amino acids connected by the macrocycle-forming linker L, form the
amino acid sequence of the peptidomimetic macrocycle; L is a
macrocycle-forming linker of the formula -L.sub.1-L.sub.2- or the
formula
##STR00044##
R.sub.1 and R.sub.2 are independently --H, alkyl, alkenyl, alkynyl,
arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, unsubstituted or substituted with halo-; R.sub.3
is hydrogen, alkyl, alkenyl, alkynyl, arylalkyl, heteroalkyl,
cycloalkyl, heterocycloalkyl, cycloalkylalkyl, cycloaryl, or
heterocycloaryl, optionally substituted with R.sub.5; L.sub.1,
L.sub.2 and L.sub.3 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each R.sub.4 is alkylene, alkenylene, alkynylene,
heteroalkylene, cycloalkylene, heterocycloalkylene, arylene, or
heteroarylene; each K is O, S, SO.sub.2, CO CO.sub.2 or CONR.sub.3;
each R.sub.5 is independently halogen, alkyl, --OR.sub.6,
--N(R.sub.6).sub.2, --SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6,
--CO.sub.2R.sub.6, a fluorescent moiety, a radioisotope or a
therapeutic agent; each R.sub.6 is independently --H, alkyl,
alkenyl, alkynyl, arylalkyl, cycloalkylalkyl, heterocycloalkyl, a
fluorescent moiety, a radioisotope or a therapeutic agent; R.sub.7
is --H, alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl,
heteroalkyl, cycloalkylalkyl, heterocycloalkyl, cycloaryl, or
heterocycloaryl, optionally substituted with R.sub.5, or part of a
cyclic structure with a D residue; R.sub.8 is --H, alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl,
heterocycloalkyl, cycloaryl, or heterocycloaryl, optionally
substituted with R.sub.5, or part of a cyclic structure with an E
residue; R.sub.9 is alkyl, alkenyl, alkynyl, aryl, cycloalkyl,
cycloalkenyl, heteroaryl, or heterocyclyl group, unsubstituted or
optionally substituted with R.sub.a and/or R.sub.b; R.sub.a and
R.sub.b are independently alkyl, OCH.sub.3, CF.sub.3, NH.sub.2,
CH.sub.2NH.sub.2, F, Br, I,
##STR00045##
v from 1-1000, for example 1-500, 1-200, 1-100, 1-50, 1-40, 1-25,
1-20, i to 15, or 1 to 10; u, x, y and z are independently integers
from 0-10, for example u is 1, 2, or 3; and n is an integer from
1-5, for example 1.
[0140] In some embodiments, u is 1.
[0141] In some embodiments, the sum of x+y+z is 2, 3 or 6, for
example 3 or 6.
[0142] In some embodiments, L.sub.1 and L.sub.2 are independently
alkylene, alkenylene or alkynylene. In some embodiments, L.sub.1
and L.sub.2 are independently C.sub.3-C.sub.10 alkylene or
alkenylene, for example C.sub.3-C.sub.6 alkylene or alkenylene.
[0143] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0144] In some embodiments, A, B, C, D, and E, taken together with
the crosslinked amino acids connected by the macrocycle-forming
linker L, form the amino acid sequence of the peptidomimetic
macrocycle which is at least about 60%, 65%, 70%, 75%, 80%, 85%,
90%, 95%, 96%, 97%, 98%, or 99% identical to an amino acid sequence
chosen from the group consisting of the amino acid sequences in
Tables 1a, 1b, 1c and 2.
[0145] In some embodiments, the present invention provides a
peptidomimetic macrocycle having the formula
##STR00046##
wherein: L' is a macrocycle-forming linker of the formula
-L.sub.1'-L.sub.2'- or the formula
##STR00047##
L.sub.1' and L.sub.2' are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; R.sub.8' is --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkyl, heteroalkyl, cycloalkylalkyl, heterocycloalkyl,
cycloaryl, or heterocycloaryl, each of which except for --H is
optionally substituted with R.sub.5, or part of a cyclic structure
with an E residue; R.sub.9 is alkyl, alkenyl, alkynyl, aryl,
cycloalkyl, cycloalkenyl, heteroaryl, or heterocyclyl group,
unsubstituted or optionally substituted with R.sub.a' and/or
R.sub.b'; R.sub.a' and R.sub.b' are independently alkyl, OCH.sub.3,
CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br, I,
##STR00048##
and x', y', and z' are independently integers from 0-10.
[0146] In some embodiments, the sum of x+y+z and the sum of
x'+y'+z' are independently 2, 3 or 6, for example 3.
[0147] In some embodiments, each of v, w, v' and w' is
independently an integer from 1 to 10, 1 to 15, 1 to 20, or 1 to
25.
[0148] In some embodiments, each of v, w, v' and w' is
independently an integer from 1 to 15.
[0149] In some embodiments, L.sub.1, L.sub.2, L.sub.1', and
L.sub.2' are independently alkylene, alkenylene or alkynylene. In
some embodiments, L.sub.1, L.sub.2, L.sub.1', and L.sub.2' are
independently C.sub.3-C.sub.10 alkylene or alkenylene, for example
C.sub.3-C.sub.6 alkylene or alkenylene. In some embodiments, L and
L' are both
##STR00049##
[0150] In some embodiments, L is
##STR00050##
and L' is
##STR00051##
[0151] For example, L and L are independently
##STR00052##
[0152] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0153] In some embodiments, the peptidomimetic macrocycle is
##STR00053##
or a pharmaceutically acceptable salt thereof.
[0154] In some embodiments, u is 2.
[0155] In some embodiments, the peptidomimetic macrocycle of
Formula (I) has the Formula:
##STR00054##
wherein each A, C, D, and E is independently an amino acid; B is an
amino acid,
##STR00055##
[--NH-L.sub.3-CO--], [--NH-L.sub.3-SO.sub.2--], or [--NH-L.sub.3-];
L' is a macrocycle-forming linker of the formula
-L.sub.1'-L.sub.2'- or the formula
##STR00056##
and wherein A, B, C, D, and E, taken together with the crosslinked
amino acids connected by the macrocycle-forming linkers L and L',
form the amino acid sequence of the peptidomimetic macrocycle;
R.sub.1' and R.sub.2' are independently --H, alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, unsubstituted or substituted with halo-; L.sub.1'
and L.sub.2' are independently alkylene, alkenylene, alkynylene,
heteroalkylene, cycloalkylene, heterocycloalkylene, cycloarylene,
heterocycloarylene, or [--R.sub.4--K--R.sub.4-].sub.n, each being
optionally substituted with R.sub.5; each K is independently O, S,
SO, SO.sub.2, CO, CO.sub.2, or CONR.sub.3; R.sub.7' is --H, alkyl,
alkenyl, alkynyl, arylalkyl, cycloalkyl, heteroalkyl,
cycloalkylalkyl, heterocycloalkyl, cycloaryl, or heterocycloaryl,
optionally substituted with R.sub.5, or part of a cyclic structure
with a D residue; R.sub.8' is --H, alkyl, alkenyl, alkynyl,
arylalkyl, cycloalkyl, heteroalkyl, cycloalkylalkyl,
heterocycloalkyl, cycloaryl, or heterocycloaryl, optionally
substituted with R.sub.5, or part of a cyclic structure with an E
residue; v' and w' are independently integers from 1-1000, for
example 1-500, 1-200, 1-100, 1-50, 1-40, 1-25, 1-20, i to 15, orn
to 10; x', y' and z' are independently integers from 0-10; and n is
an integer from 1-5. In some embodiments, the sum of x'+y'+z' is 2,
3 or 6, for example 3 or 6.
[0156] In some embodiments of any of the peptidomimetic macrocycles
described herein, each K is O, S, SO, SO.sub.2, CO, or
CO.sub.2.
[0157] In one example, at least one of R.sub.1 and R.sub.2 is
alkyl, unsubstituted or substituted with halo-. In another example,
both R.sub.1 and R.sub.2 are independently alkyl, unsubstituted or
substituted with halo-. In some embodiments, at least one of
R.sub.1 and R.sub.2 is methyl. In other embodiments, R.sub.1 and
R.sub.2 are methyl.
[0158] In some embodiments of the invention, the sum of the sum of
x+y+z is at least 3, and/or the su of x'+y'+z' is at least 3. In
other embodiments of the invention, the sum of the sum ofx+y+z is
1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 (for example 2, 3 or 6) and/or the
sum ofx'+y'+z' is 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 (for example 2, 3
or 6).
[0159] Each occurrence of A, B, C, D or E in a macrocycle or
macrocycle precursor of the invention is independently selected.
For example, a sequence represented by the formula [A].sub.x, when
x is 3, encompasses embodiments where the amino acids are not
identical, e.g. Gln-Asp-Ala as well as embodiments where the amino
acids are identical, e.g. Gln-Gln-Gln. This applies for any value
of x, y, or z in the indicated ranges. Similarly, when u is greater
than 1, each compound of the invention may encompass peptidomimetic
macrocycles which are the same or different. For example, a
compound of the invention may comprise peptidomimetic macrocycles
comprising different linker lengths or chemical compositions.
[0160] In some embodiments, the peptidomimetic macrocycle of the
invention comprises a secondary structure which is an .alpha.-helix
and R.sub.8 is --H, allowing intrahelical hydrogen bonding. In some
embodiments, at least one of A, B, C, D or E is an
.alpha.,.alpha.-disubstituted amino acid. In one example, B is an
.alpha.,.alpha.-disubstituted amino acid. For instance, at least
one of A, B, C, D or E is 2-aminoisobutyric acid. In other
embodiments, at least one of A, B, C, D or E is
##STR00057##
[0161] In other embodiments, the length of the macrocycle-forming
linker L as measured from a first C.alpha. to a second C.alpha. is
selected to stabilize a desired secondary peptide structure, such
as an .alpha.-helix formed by residues of the peptidomimetic
macrocycle including, but not necessarily limited to, those between
the first C.alpha. to a second C.alpha..
[0162] In one embodiment, the peptidomimetic macrocycle of Formula
(I) is:
##STR00058##
[0163] wherein each R.sub.1 and R.sub.2 is independently --H,
alkyl, alkenyl, alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl,
heteroalkyl, or heterocycloalkyl, unsubstituted or substituted with
halo-.
[0164] In related embodiments, the peptidomimetic macrocycle
comprises a structure of Formula (I) which is:
##STR00059##
[0165] In other embodiments, the peptidomimetic macrocycle of
Formula (I) is a compound of any of the formulas shown below:
##STR00060## ##STR00061##
wherein "AA" represents any natural or non-natural amino acid side
chain and "" is [D].sub.v, [E].sub.w as defined above, and n is an
integer between 0 and 20, 50, 100, 200, 300, 400 or 500. In some
embodiments, the substituent "n" shown in the preceding paragraph
is 0. In other embodiments, the substituent "n" shown in the
preceding paragraph is less than 50, 40, 30, 20, 10, or 5.
[0166] Exemplary embodiments of the macrocycle-forming linker L are
shown below.
##STR00062##
[0167] In other embodiments, D and/or E in the compound of Formula
I are further modified in order to facilitate cellular uptake. In
some embodiments, lipidating or PEGylating a peptidomimetic
macrocycle facilitates cellular uptake, increases bioavailability,
increases blood circulation, alters pharmacokinetics, decreases
immunogenicity and/or decreases the needed frequency of
administration.
[0168] In other embodiments, at least one of [D] and [E] in the
compound of Formula I represents a moiety comprising an additional
macrocycle-forming linker such that the peptidomimetic macrocycle
comprises at least two macrocycle-forming linkers. In a specific
embodiment, a peptidomimetic macrocycle comprises two
macrocycle-forming linkers.
[0169] In the peptidomimetic macrocycles of the invention, any of
the macrocycle-forming linkers described herein may be used in any
combination with any of the sequences shown in Tables 1a, 1b, 1c,
and 2 and also with any of the R-substituents indicated herein.
[0170] In some embodiments, the peptidomimetic macrocycle comprises
at least one .alpha.-helix motif. For example, A, B and/or C in the
compound of Formula I include one or more .alpha.-helices. As a
general matter, .alpha.-helices include between 3 and 4 amino acid
residues per turn. In some embodiments, the .alpha.-helix of the
peptidomimetic macrocycle includes 1 to 5 turns and, therefore, 3
to 20 amino acid residues. In specific embodiments, the
.alpha.-helix includes 1 turn, 2 turns, 3 turns, 4 turns, or 5
turns. In some embodiments, the macrocycle-forming linker
stabilizes an .alpha.-helix motif included within the
peptidomimetic macrocycle. Thus, in some embodiments, the length of
the macrocycle-forming linker L from a first C.alpha. to a second
C.alpha. is selected to increase the stability of an .alpha.-helix.
In some embodiments, the macrocycle-forming linker spans from 1
turn to 5 turns of the .alpha.-helix. In some embodiments, the
macrocycle-forming linker spans approximately 1 turn, 2 turns, 3
turns, 4 turns, or 5 turns of the .alpha.-helix. In some
embodiments, the length of the macrocycle-forming linker is
approximately 5 .ANG. to 9 .ANG. per turn of the .alpha.-helix, or
approximately 6 .ANG. to 8 .ANG. per turn of the .alpha.-helix.
Where the macrocycle-forming linker spans approximately 1 turn of
an .alpha.-helix, the length is equal to approximately 5
carbon-carbon bonds to 13 carbon-carbon bonds, approximately 7
carbon-carbon bonds to 11 carbon-carbon bonds, or approximately 9
carbon-carbon bonds. Where the macrocycle-forming linker spans
approximately 2 turns of an .alpha.-helix, the length is equal to
approximately 8 carbon-carbon bonds to 16 carbon-carbon bonds,
approximately 10 carbon-carbon bonds to 14 carbon-carbon bonds, or
approximately 12 carbon-carbon bonds. Where the macrocycle-forming
linker spans approximately 3 turns of an .alpha.-helix, the length
is equal to approximately 14 carbon-carbon bonds to 22
carbon-carbon bonds, approximately 16 carbon-carbon bonds to 20
carbon-carbon bonds, or approximately 18 carbon-carbon bonds. Where
the macrocycle-forming linker spans approximately 4 turns of an
.alpha.-helix, the length is equal to approximately 20
carbon-carbon bonds to 28 carbon-carbon bonds, approximately 22
carbon-carbon bonds to 26 carbon-carbon bonds, or approximately 24
carbon-carbon bonds. Where the macrocycle-forming linker spans
approximately 5 turns of an .alpha.-helix, the length is equal to
approximately 26 carbon-carbon bonds to 34 carbon-carbon bonds,
approximately 28 carbon-carbon bonds to 32 carbon-carbon bonds, or
approximately 30 carbon-carbon bonds. Where the macrocycle-forming
linker spans approximately 1 turn of an .alpha.-helix, the linkage
contains approximately 4 atoms to 12 atoms, approximately 6 atoms
to 10 atoms, or approximately 8 atoms. Where the macrocycle-forming
linker spans approximately 2 turns of the .alpha.-helix, the
linkage contains approximately 7 atoms to 15 atoms, approximately 9
atoms to 13 atoms, or approximately 11 atoms. Where the
macrocycle-forming linker spans approximately 3 turns of the
.alpha.-helix, the linkage contains approximately 13 atoms to 21
atoms, approximately 15 atoms to 19 atoms, or approximately 17
atoms. Where the macrocycle-forming linker spans approximately 4
turns of the .alpha.-helix, the linkage contains approximately 19
atoms to 27 atoms, approximately 21 atoms to 25 atoms, or
approximately 23 atoms. Where the macrocycle-forming linker spans
approximately 5 turns of the .alpha.-helix, the linkage contains
approximately 25 atoms to 33 atoms, approximately 27 atoms to 31
atoms, or approximately 29 atoms. Where the macrocycle-forming
linker spans approximately 1 turn of the .alpha.-helix, the
resulting macrocycle forms a ring containing approximately 17
members to 25 members, approximately 19 members to 23 members, or
approximately 21 members. Where the macrocycle-forming linker spans
approximately 2 turns of the .alpha.-helix, the resulting
macrocycle forms a ring containing approximately 29 members to 37
members, approximately 31 members to 35 members, or approximately
33 members. Where the macrocycle-forming linker spans approximately
3 turns of the .alpha.-helix, the resulting macrocycle forms a ring
containing approximately 44 members to 52 members, approximately 46
members to 50 members, or approximately 48 members. Where the
macrocycle-forming linker spans approximately 4 turns of the
.alpha.-helix, the resulting macrocycle forms a ring containing
approximately 59 members to 67 members, approximately 61 members to
65 members, or approximately 63 members. Where the
macrocycle-forming linker spans approximately 5 turns of the
.alpha.-helix, the resulting macrocycle forms a ring containing
approximately 74 members to 82 members, approximately 76 members to
80 members, or approximately 78 members.
[0171] In some embodiments, L is a macrocycle-forming linker of the
formula
##STR00063##
[0172] Exemplary embodiments of such macrocycle-forming linkers L
are shown below.
##STR00064## ##STR00065## ##STR00066## ##STR00067## ##STR00068##
##STR00069## ##STR00070## ##STR00071## ##STR00072##
[0173] In some embodiments, a peptidomimetic macrocycle of the
invention comprises a macrocycle-forming linker connecting a
backbone amino group of a first amino acid to a second amino acid
within the peptidomimetic macrocycle.
[0174] In other embodiments, the invention provides peptidomimetic
macrocycles of Formula (II) or (IIa):
##STR00073##
wherein: each A, C, D, and E is independently an amino acid; B is
an amino acid,
##STR00074##
[--NH-L.sub.3-CO--], [--NH-L.sub.3-SO.sub.2--], or [--NH-L.sub.3-];
R.sub.1 and R.sub.2 are independently --H, alkyl, alkenyl, alkynyl,
arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, unsubstituted or substituted with halo-, or part
of a cyclic structure with an E residue; R.sub.3 is hydrogen,
alkyl, alkenyl, alkynyl, arylalkyl, heteroalkyl, cycloalkyl,
heterocycloalkyl, cycloalkylalkyl, cycloaryl, or heterocycloaryl,
optionally substituted with R.sub.5; L.sub.1, L.sub.2 and L.sub.3
are independently alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, cycloarylene,
heterocycloarylene, or [--R.sub.4--K--R.sub.4-].sub.n, each being
optionally substituted with R.sub.5; and wherein A, B, C, D, and E,
taken together with the crosslinked amino acids connected by the
macrocycle-forming linker -L.sub.1-L.sub.2-, form the amino acid
sequence of the peptidomimetic macrocycle which is at least about
60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99%
identical to an amino acid sequence chosen from the group
consisting of the amino acid sequences in Tables 1a, 1b, 1c and 2;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, CO.sub.2, or CONR.sub.3; each R.sub.5
is independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope or a therapeutic agent; R.sub.7 is --H, alkyl,
alkenyl, alkynyl, arylalkyl, cycloalkyl, heteroalkyl,
cycloalkylalkyl, heterocycloalkyl, cycloaryl, or heterocycloaryl,
optionally substituted with R.sub.5; v and w are independently
integers from 1-1000, for example 1-100; u, x, y and z are
independently integers from 0-10, for example u is 1-3; and n is an
integer from 1-5.
[0175] In some embodiments, u is 1.
[0176] In some embodiments, the sum of x+y+z is 2, 3 or 6, for
example 3.
[0177] In some embodiments, each of v and w is independently an
integer from 1 to 10, 1 to 15, to 20, or to 25, for example from 1
to 15.
[0178] In some embodiments, L.sub.1 and L.sub.2 are independently
alkylene, alkenylene or alkynylene. In some embodiments, L.sub.1
and L.sub.2 are independently C.sub.3-C.sub.10 alkylene or
alkenylene, for example C.sub.3-C.sub.6 alkylene or alkenylene.
[0179] In some embodiments, R.sub.1 and R.sub.2 are H.
[0180] In some embodiments, at least one of R.sub.1 and R.sub.2 is
alkyl, unsubstituted or substituted with halo-. In another example,
both R.sub.1 and R.sub.2 are independently alkyl, unsubstituted or
substituted with halo-. In some embodiments, at least one of
R.sub.1 and R.sub.2 is methyl. In other embodiments, R.sub.1 and
R.sub.2 are methyl.
[0181] In some embodiments of the invention, the sum of x+y+z is at
least 1. In other embodiments of the invention, the sum of x+y+z is
at least 2. In other embodiments of the invention, the su of x+y+z
is 1,2,3,4,5,6, 7, 8, 9 or 10. Each occurrence of A, B, C, D or E
in a macrocycle or macrocycle precursor of the invention is
independently selected. For example, a sequence represented by the
formula [A].sub.x, when x is 3, encompasses embodiments where the
amino acids are not identical, e.g. Gln-Asp-Ala as well as
embodiments where the amino acids are identical, e.g. Gln-Gln-Gln.
This applies for any value of x, y, or z in the indicated
ranges.
[0182] In some embodiments, the peptidomimetic macrocycle of the
invention comprises a secondary structure which is an .alpha.-helix
and R.sub.8 is --H, allowing intrahelical hydrogen bonding. In some
embodiments, at least one of A, B, C, D or E is an
.alpha.,.alpha.-disubstituted amino acid. In one example, B is an
.alpha.,.alpha.-disubstituted amino acid. For instance, at least
one of A, B, C, D or E is 2-aminoisobutyric acid. In other
embodiments, at least one of A, B, C, D or E is
##STR00075##
[0183] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence of the
formula:
X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X-
21-X22-X23-X24-X25-X26-X27-X28-X29-X30-X31-X32 (SEQ ID NO: 2)
wherein: X1 is a hydrophobic amino acid, or absent; X2 is a
hydrophobic amino acid, or absent; X3 is a negatively charged amino
acid, a positively charged amino acid, or absent; X4 is an
uncharged polar amino acid, or absent; X5 is a negatively charged
amino acid, or absent; X6 is a hydrophobic amino acid, a negatively
charged amino acid, a positively charged amino acid, an uncharged
polar amino acid, or absent; X7 is a hydrophobic amino acid, a
negatively charged amino acid, or absent; X8 is a negatively
charged amino acid, a positively charged amino acid, or absent; X9
is a negatively charged amino acid, absent, or a cross-linked amino
acid; X10 is a negatively charged amino acid, a positively charged
amino acid, an uncharged polar amino acid, or a cross-linked amino
acid; X11 is a hydrophobic amino acid, a negatively charged amino
acid, a positively charged amino acid, or a cross-linked amino
acid; X12 is a hydrophobic amino acid, a negatively charged amino
acid, or a cross-linked amino acid; X13 is a hydrophobic amino
acid, a hydrophobic amino acid, a negatively charged amino acid, or
a cross-linked amino acid; X14 is a cross-linked amino acid; X15 is
a hydrophobic amino acid, a negatively charged amino acid, or a
cross-linked amino acid; X16 is a hydrophobic amino acid, a
negatively charged amino acid, or a cross-linked amino acid; X17 is
a hydrophobic amino acid, a negatively charged amino acid, a
positively charged amino acid, or a cross-linked amino acid; X18 is
a cross-linked amino acid; X19 is a hydrophobic amino acid, a
negatively charged amino acid, a positively charged amino acid, or
a cross-linked amino acid; X20 is a negatively charged amino acid,
a hydrophobic amino acid, or a cross-linked amino acid; X21 is a
hydrophobic amino acid, or a negatively charged amino acid; X22 is
a negatively charged amino acid, or absent; X23 is a positively
charged amino acid, a negatively charged amino acid, or absent; X24
is a hydrophobic amino acid, a negatively charged amino acid, or
absent; X25 is a hydrophobic amino acid, a negatively charged amino
acid, or absent; X26 is a negatively charged amino acid, or absent;
X27 is a hydrophobic amino acid, or absent; X28 is a hydrophobic
amino acid, or absent; absent; X29 is a negatively charged amino
acid, an uncharged polar amino acid, or absent; X30 is a
hydrophobic amino acid, or absent; X31 is a hydrophobic amino acid,
or absent; and X32 is a hydrophobic amino acid, or absent; wherein
the peptidomimetic macrocycle comprises at least one
macrocycle-forming linker connecting at least one pair of amino
acids selected from X1-X28; L is a macrocycle-forming linker of the
formula -L.sub.1-L.sub.2- or the formula
##STR00076##
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each the cross-linked amino acid is optionally
substituted at the alpha carbon position with R.sub.1 or R.sub.2,
wherein R.sub.1 and R.sub.2 are independently alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each being optionally substituted with halo-;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, or CO.sub.2; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.6, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; and R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br,
I,
##STR00077##
[0184] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence of the
formula:
X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X-
21-X22-X23-X24-X25-X26-X27-X28-X29-X30-X31-X32 (SEQ ID NO: 3)
X1 is Val or absent; X2 is Ile, Phe, or absent; X3 is Asp, Arg, or
absent; X4 is Thr or absent; X5 is Asp or absent; X6 is Phe, Ala,
Glu, Ser, Dpr, Asn, or absent; X7 is Ile, Ala, Glu, Ser, or absent;
X8 is Asp, Ala, Ser, Dpr, or absent; X9 is Glu, Ala, absent, or a
cross-linked amino acid; X10 is Glu, Ala, Ser, Dpr, Gln, or a
cross-linked amino acid; X11 is Val, Ala, Asp, Ser, Dpr, or a
cross-linked amino acid; X12 is Leu, Ala, Glu, Ser, pL, or a
cross-linked amino acid; X13 is Met, Nle, Ala, Asp, or a
cross-linked amino acid; X14 is Ser or a cross-linked amino acid;
X15 is Leu, Ala, Asp, Ser, or a cross-linked amino acid; X16 is
Val, Ala, Glu, Ser, pL, or a cross-linked amino acid; X17 is Ile,
Ala, Glu, Ser, Dpr, Bpa, or a cross-linked amino acid; X18 is Glu
or a cross-linked amino acid; X19 is Met, Nle, Ala, Glu, Ser, Dpr,
Bpa, or a cross-linked amino acid; X20 is Gly, Ala, Glu, Ser, or a
cross-linked amino acid;
X21 is Leu, Ala, Glu, or Ser;
[0185] X22 is Asp, Ala, Ser, or absent; X23 is Arg, Ala, Glu, Ser,
Dpr, or absent; X24 is Ile, Ala, Glu, Ser, or absent; X25 is Lys,
Glu, or absent; X26 is Glu or absent; X27 is Leu or absent; X28 is
Pro or absent; X29 is Glu, Gln, or absent; X30 is Leu or absent;
X31 is Trp or absent; and X32 is Leu or absent; wherein the
peptidomimetic macrocycle comprises at least one macrocycle-forming
linker connecting at least one pair of amino acids selected from
X1-X28; L is a macrocycle-forming linker of the formula
-L.sub.1-L.sub.2- or the formula
##STR00078##
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.n, each being optionally substituted
with R.sub.5; each the cross-linked amino acid is optionally
substituted at the alpha carbon position with R.sub.1 or R.sub.2,
wherein R.sub.1 and R.sub.2 are independently alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each being optionally substituted with halo-;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, or CO.sub.2; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.E, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; and R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br,
I,
##STR00079##
[0186] A peptidomimetic macrocycle comprising an amino acid
sequence of the formula:
X1-X2-X3-X4-X5-X6-X7-X8-X9-X10-X11-X12-X13-X14-X15-X16-X17-X18-X19-X20-X-
21-X22-X23-X24-X25-X26-X27-X28-X29-X30-X31-X32 (SEQ ID NO: 4)
wherein: X1 is Val or absent; X2 is Ile, Phe, or absent; X3 is Asp,
Arg, or absent; X4 is Thr or absent; X5 is Asp or absent; X6 is
Phe, Ala, Glu, Ser, Dpr, Asn, or absent; X7 is Ile, Ala, Glu, Ser,
or absent; X8 is Asp, Ala, Ser, Dpr, or absent; X9 is Glu, Ala,
absent, or a cross-linked amino acid; X10 is Glu, Ala, Ser, Dpr,
Gln, or a cross-linked amino acid; X11 is Val, Ala, Asp, Ser, Dpr,
or a cross-linked amino acid; X12 is Leu, Ala, Glu, Ser, pL, or a
cross-linked amino acid; X13 is Met, Nle, Ala, Asp, or a
cross-linked amino acid; X14 is Ser or a cross-linked amino acid;
X15 is Leu, Ala, Asp, Ser, or a cross-linked amino acid; X16 is
Val, Ala, Glu, Ser, pL, or a cross-linked amino acid; X17 is Ile,
Ala, Glu, Ser, Dpr, Bpa, or a cross-linked amino acid; X18 is Glu
or a cross-linked amino acid; X19 is Met, Nle, Ala, Glu, Ser, Dpr,
Bpa, or a cross-linked amino acid; X20 is Gly, Ala, Glu, Ser, or a
cross-linked amino acid;
X21 is Leu, Ala, Glu, or Ser;
[0187] X22 is Asp, Ala, Ser, or absent; X23 is Arg, Ala, Glu, Ser,
Dpr, or absent; X24 is Ile, Ala, Glu, Ser, or absent; X25 is Lys,
Glu, or absent; X26 is Glu or absent; X27 is Leu or absent; X28 is
Pro or absent; X29 is Glu, Gln, or absent; X30 is Leu or absent;
X31 is Trp or absent; and X32 is Leu or absent; wherein the
peptidomimetic macrocycle comprises at least one macrocycle-forming
linker connecting at least one pair of amino acids selected from
X1-X28; L is a macrocycle-forming linker of the formula
-L.sub.1-L.sub.2- or the formula
##STR00080##
L.sub.1 and L.sub.2 are independently alkylene, alkenylene,
alkynylene, heteroalkylene, cycloalkylene, heterocycloalkylene,
cycloarylene, heterocycloarylene, or
[--R.sub.4--K--R.sub.4-].sub.6, each being optionally substituted
with R.sub.5; each the cross-linked amino acid is optionally
substituted at the alpha carbon position with R.sub.1 or R.sub.2,
wherein R.sub.1 and R.sub.2 are independently alkyl, alkenyl,
alkynyl, arylalkyl, cycloalkyl, cycloalkylalkyl, heteroalkyl, or
heterocycloalkyl, each being optionally substituted with halo-;
each R.sub.4 is alkylene, alkenylene, alkynylene, heteroalkylene,
cycloalkylene, heterocycloalkylene, arylene, or heteroarylene; each
K is O, S, SO, SO.sub.2, CO, or CO.sub.2; each R.sub.5 is
independently halogen, alkyl, --OR.sub.6, --N(R.sub.6).sub.2,
--SR.sub.6, --SOR.sub.E, --SO.sub.2R.sub.6, --CO.sub.2R.sub.6, a
fluorescent moiety, a radioisotope, or a therapeutic agent; each
R.sub.6 is independently --H, alkyl, alkenyl, alkynyl, arylalkyl,
cycloalkylalkyl, heterocycloalkyl, a fluorescent moiety, a
radioisotope, or a therapeutic agent; R.sub.9 is alkyl, alkenyl,
alkynyl, aryl, cycloalkyl, cycloalkenyl, heteroaryl, or
heterocyclyl group, unsubstituted or optionally substituted with
R.sub.a and/or R.sub.b; and R.sub.a and R.sub.b are independently
alkyl, OCH.sub.3, CF.sub.3, NH.sub.2, CH.sub.2NH.sub.2, F, Br,
I,
##STR00081##
[0188] In some embodiments, the peptidomimetic macrocycle of the
invention comprises one macrocycle-forming linker.
[0189] In some embodiments, the macrocycle-forming linker of the
peptidomimetic macrocycle of the invention connects one of the
following pairs of amino acids: X9 and X14, X9 and X16, X10 and
X14, X10 and X17, X11 and X15, X11 and X18, X12 and X16, X12 and
X19, X13 and X17, X13 and X20, X14 and X18, and X14 and X19. In
some embodiments, the macrocycle-forming linker connects amino
acids: X10 and X14. In some embodiments, the macrocycle-forming
linker connects amino acids: X14 and X18.
[0190] In some embodiments, X9 is Glu. In some embodiments, X12 is
Leu. In some embodiments, X13 is Nle or Met. In some embodiments,
X16 is Val. In some embodiments, X18 is Glu. In some embodiments,
X19 is Nle or Met. In some embodiments, X20 is Ala. In some
embodiments, X21 is Leu. In some embodiments, X22 is Asp. In some
embodiments, X24 is Ile. In some embodiments, X30 is Leu. In some
embodiments, X31 is Trp.
[0191] In some embodiments, L.sub.1 and L.sub.2 are independently
alkylene, alkenylene or alkynylene. In some embodiments, L.sub.1
and L.sub.2 are independently C.sub.3-C.sub.10 alkylene or
alkenylene, for example C.sub.3-C.sub.6 alkylene or alkenylene. For
example, L is
##STR00082##
[0192] In some embodiments, L is
##STR00083##
for example
##STR00084##
[0193] In some embodiments, R.sub.1 and R.sub.2 are H. In some
embodiments, R.sub.1 and R.sub.2 are independently alkyl, for
example methyl.
[0194] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is about 60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLMSLVIEMALDRI (SEQ ID NO: 5), for
example an amino acid sequence of FIDEEVLM-Z-LVI-Z-MALDRI (SEQ ID
NO: 6), wherein each Z is independently a cross-linked amino acid.
In some embodiments, the peptidomimetic macrocycle is
##STR00085##
or a pharmaceutically acceptable salt thereof.
[0195] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is about 60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLNleSLVIENleALDRI (SEQ ID NO: 7), for
example an amino acid sequence of FIDEEVLNle-Z-LVI-Z-NleALDRI (SEQ
ID NO: 8), wherein each Z is independently a cross-linked amino
acid. In some embodiments, the peptidomimetic macrocycle is
##STR00086##
or a pharmaceutically acceptable salt thereof.
[0196] In some embodiments, the present invention provides a
peptidomimetic macrocycle comprising an amino acid sequence which
is about 60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an
amino acid sequence of FIDEEVLMSLVIEMGLDRIKELPELWL (SEQ ID NO: 9),
for example an amino acid sequence of
FIDEEVLM-Z-LVI-Z-MGLDRIKELPELWL (SEQ ID NO: 10), wherein each Z is
independently a cross-linked amino acid.
[0197] In some embodiments, a peptidomimetic macrocycle of the
invention has a formula
X6-X7-X8-X9-X10-X11-X2-X13-X14-X15-X16-X17-X18-X19-X20-X21-X22-X23-X24-X2-
5-X26-X27-X28 (SEQ ID NO: 11). In some embodiments, a
macrocycle-forming linker of the peptidomimetic macrocycle of the
invention connects one of the following pairs of amino acids: X10
and X14, X10 and X17, X11 and X18, X12 and X16, X12 and X19, and
X14 and X18, for example X14 and X18. In some embodiments, X13 is
Nle. In some embodiments, X19 is Nle. In some embodiments, X20 is
Ala.
[0198] In some embodiments, a peptidomimetic macrocycle of the
invention further comprises an amino acid sequence which is about
60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an amino
acid sequence of LLQGEELLRALDQV (SEQ ID NO: 12). In some
embodiments, the peptidomimetic macrocycle comprises an amino acid
sequence of LLQGEEL-Z-RAL-Z-QV (SEQ ID NO: 13), wherein each Z is
independently a cross-linked amino acid. In some embodiments, X6 is
linked to the amino acid sequence of LLQGEEL-Z-RAL-Z-QV (SEQ ID NO:
13). In some embodiments, the peptidomimetic macrocycle comprises
an amino acid sequence of LLQGE-Z-LLRALD-Z-V (SEQ ID NO: 14),
wherein each Z is independently a cross-linked amino acid. In some
embodiments, X6 is linked to the amino acid sequence of
LLQGEEL-Z-RAL-Z-QV (SEQ ID NO: 13).
[0199] In some embodiments, a peptidomimetic macrocycle of the
invention further comprises an amino acid sequence which is about
60%, 65%, 70%, 75%, 80%, 85%, 90%, or 95% identical to an amino
acid sequence of QLTSYDCEVNA (SEQ ID NO: 15), for example an amino
acid sequence of QLT-Z-YDAbu-Z-VNA (SEQ ID NO: 16), wherein each Z
is independently a cross-linked amino acid. In some embodiments,
X28 is linked to the amino acid sequence of QLT-Z-YDAbu-Z-VNA (SEQ
ID NO: 16).
[0200] In other embodiments, the length of the macrocycle-forming
linker -L.sub.1-L.sub.2- as measured from a first C.alpha. to a
second C.alpha. is selected to stabilize a desired secondary
peptide structure, such as an .alpha.-helix formed by residues of
the peptidomimetic macrocycle including, but not necessarily
limited to, those between the first C.alpha. to a second
C.alpha..
[0201] Exemplary embodiments of the macrocycle-forming linker
-L.sub.1-L.sub.2- are shown below.
##STR00087##
Preparation of Peptidomimetic Macrocycles
[0202] Peptidomimetic macrocycles of the invention may be prepared
by any of a variety of methods known in the art. For example, any
of the cross-linked amino acids in Tables 1a, 1b, 1c and 2 may be
substituted with a residue capable of forming a crosslinker with a
second residue in the same molecule or a precursor of such a
residue.
[0203] Various methods to effect formation of peptidomimetic
macrocycles are known in the art. For example, the preparation of
peptidomimetic macrocycles of Formula (I) is described in
Schafeister et al., J. Am. Chem. Soc. 122:5891-5892 (2000);
Schafmeister & Verdine, J. Am. Chem. Soc. 122:5891 (2005);
Walensky et al., Science 305:1466-1470 (2004); U.S. Pat. No.
7,192,713 and PCT application WO 2008/121767. The
.alpha.,.alpha.-disubstituted amino acids and amino acid precursors
disclosed in the cited references may be employed in synthesis of
the peptidomimetic macrocycle precursor polypeptides. For example,
the "S5-olefin amino acid" is (S)-.alpha.-(2'-pentenyl) alanine and
the "R8 olefin amino acid" is (R)-.alpha.-(2'-octenyl) alanine.
Following incorporation of such amino acids into precursor
polypeptides, the terminal olefins are reacted with a metathesis
catalyst, leading to the formation of the peptidomimetic
macrocycle. In various embodiments, the following amino acids may
be employed in the synthesis of the peptidomimetic macrocycle:
##STR00088##
[0204] In some embodiments, x+y+z is 3, and A, B and C are
independently natural or non-natural amino acids. In other
embodiments, x+y+z is 6, and A, B and C are independently natural
or non-natural amino acids.
[0205] In some embodiments, the contacting step is performed in a
solvent selected from the group consisting of protic solvent,
aqueous solvent, organic solvent, and mixtures thereof. For
example, the solvent may be chosen from the group consisting of
H.sub.2O, THF, THF/H.sub.2O, tBuOH/H.sub.2O, DMF, DIPEA, CH.sub.3CN
or CH.sub.2Cl.sub.2, ClCH.sub.2CH.sub.2Cl or a mixture thereof. The
solvent may be a solvent which favors helix formation.
[0206] Alternative but equivalent protecting groups, leaving groups
or reagents are substituted, and certain of the synthetic steps are
performed in alternative sequences or orders to produce the desired
compounds. Synthetic chemistry transformations and protecting group
methodologies (protection and deprotection) useful in synthesizing
the compounds described herein include, for example, those such as
described in Larock, Comprehensive Organic Transformations, VCH
Publishers (1989); Greene and Wuts, Protective Groups in Organic
Synthesis, 2d. Ed., John Wiley and Sons (1991); Fieser and Fieser,
Fieser and Fieser's Reagents for Organic Synthesis, John Wiley and
Sons (1994); and Paquette, ed., Encyclopedia of Reagents for
Organic Synthesis, John Wiley and Sons (1995), and subsequent
editions thereof.
[0207] The peptidomimetic macrocycles disclosed herein are made,
for example, by chemical synthesis methods, such as described in
Fields et al., Chapter 3 in Synthetic Peptides: A User's Guide, ed.
Grant, W. H. Freeman & Co., New York, N.Y., 1992, p. 77. Hence,
for example, peptides are synthesized using the automated
Merrifield techniques of solid phase synthesis with the amine
protected by either tBoc or Fmoc chemistry using side chain
protected amino acids on, for example, an automated peptide
synthesizer (e.g., Applied Biosystems (Foster City, Calif.), Model
430A, 431, or 433).
[0208] One manner of producing the peptidomimetic precursors and
peptidomimetic macrocycles described herein uses solid phase
peptide synthesis (SPPS). The C-terminal amino acid is attached to
a cross-linked polystyrene resin via an acid labile bond with a
linker molecule. This resin is insoluble in the solvents used for
synthesis, making it relatively simple and fast to wash away excess
reagents and by-products. The N-terminus is protected with the Fmoc
group, which is stable in acid, but removable by base. Side chain
functional groups are protected as necessary with base stable, acid
labile groups.
[0209] Longer peptidomimetic precursors are produced, for example,
by conjoining individual synthetic peptides using native chemical
ligation. Alternatively, the longer synthetic peptides are
biosynthesized by well known recombinant DNA and protein expression
techniques. Such techniques are provided in well-known standard
manuals with detailed protocols. To construct a gene encoding a
peptidomimetic precursor of this invention, the amino acid sequence
is reverse translated to obtain a nucleic acid sequence encoding
the amino acid sequence, preferably with codons that are optimum
for the organism in which the gene is to be expressed. Next, a
synthetic gene is made, typically by synthesizing oligonucleotides
which encode the peptide and any regulatory elements, if necessary.
The synthetic gene is inserted in a suitable cloning vector and
transfected into a host cell. The peptide is then expressed under
suitable conditions appropriate for the selected expression system
and host. The peptide is purified and characterized by standard
methods.
[0210] The peptidomimetic precursors are made, for example, in a
high-throughput, combinatorial fashion using, for example, a
high-throughput polychannel combinatorial synthesizer (e.g.,
Thuraed TETRAS multichannel peptide synthesizer from CreoSalus,
Louisville, Ky. or Model Apex 396 multichannel peptide synthesizer
from AAPPTEC, Inc., Louisville, Ky.).
[0211] In some embodiments, the peptidomimetic macrocycles of the
invention comprise triazole macrocycle-forming linkers. For
example, the synthesis of such peptidomimetic macrocycles involves
a multi-step process that features the synthesis of a
peptidomimetic precursor containing an azide moiety and an alkyne
moiety; followed by contacting the peptidomimetic precursor with a
macrocyclization reagent to generate a triazole-linked
peptidomimetic macrocycle. Such a process is described, for
example, in U.S. application Ser. No. 12/037,041, filed on Feb. 25,
2008. Macrocycles or macrocycle precursors are synthesized, for
example, by solution phase or solid-phase methods, and can contain
both naturally-occurring and non-naturally-occurring amino acids.
See, for example, Hunt, "The Non-Protein Amino Acids" in Chemistry
and Biochemistry of the Amino Acids, edited by G. C. Barrett,
Chapman and Hall, 1985.
[0212] In some embodiments, an azide is linked to the
.alpha.-carbon of a residue and an alkyne is attached to the
.alpha.-carbon of another residue. In some embodiments, the azide
moieties are azido-analogs of amino acids L-lysine, D-lysine,
alpha-methyl-L-lysine, alpha-methyl-D-lysine, L-omithine,
D-omithine, alpha-methyl-L-ornithine or alpha-methyl-D-omithine. In
another embodiment, the alkyne moiety is L-propargylglycine. In yet
other embodiments, the alkyne moiety is an amino acid selected from
the group consisting of L-propargylglycine, D-propargylglycine,
(S)-2-amino-2-methyl-4-pentynoic acid,
(R)-2-amino-2-methyl-4-pentynoic acid,
(S)-2-amino-2-methyl-5-hexynoic acid,
(R)-2-amino-2-methyl-5-hexynoic acid,
(S)-2-amino-2-methyl-6-heptynoic acid,
(R)-2-amino-2-methyl-6-heptynoic acid,
(S)-2-amino-2-methyl-7-octynoic acid,
(R)-2-amino-2-methyl-7-octynoic acid,
(S)-2-amino-2-methyl-8-nonynoic acid and
(R)-2-amino-2-methyl-8-nonynoic acid.
[0213] The following synthetic schemes are provided solely to
illustrate the present invention and are not intended to limit the
scope of the invention, as described herein. To simplify the
drawings, the illustrative schemes depict azido amino acid analogs
.epsilon.-azido-.alpha.-methyl-L-lysine and
8-azido-1-methyl-D-lysine, and alkyne amino acid analogs
L-propargylglycine, (S)-2-amino-2-methyl-4-pentynoic acid, and
(S)-2-amino-2-methyl-6-heptynoic acid. Thus, in the following
synthetic schemes, each R.sub.1, R.sub.2, R.sub.7 and R.sub.8 is
--H; each L.sub.1 is --(CH.sub.2).sub.4--; and each L.sub.2 is
--(CH.sub.2)--. However, as noted throughout the detailed
description above, many other amino acid analogs can be employed in
which R.sub.1, R.sub.2, R.sub.7, R.sub.8, L.sub.1 and L.sub.2 can
be independently selected from the various structures disclosed
herein.
##STR00089## ##STR00090## ##STR00091## ##STR00092##
[0214] Synthetic Scheme 1 describes the preparation of several
compounds of the invention. Ni(II) complexes of Schiff bases
derived from the chiral auxiliary
(S)-2-[N--(N'-benzylprolyl)amino]benzophenone (BPB) and amino acids
such as glycine or alanine are prepared as described in Belokon et
al. (1998), Tetrahedron Asymm. 9:4249-4252. The resulting complexes
are subsequently reacted with alkylating reagents comprising an
azido or alkynyl moiety to yield enantiomerically enriched
compounds of the invention. If desired, the resulting compounds can
be protected for use in peptide synthesis.
##STR00093##
[0215] In the general method for the synthesis of peptidomimetic
macrocycles shown in Synthetic Scheme 2, the peptidomimetic
precursor contains an azide moiety and an alkyne moiety and is
synthesized by solution-phase or solid-phase peptide synthesis
(SPPS) using the commercially available amino acid
N-.alpha.-Fmoc-L-propargylglycine and the N-.alpha.-Fmoc-protected
forms of the amino acids (S)-2-amino-2-methyl-4-pentynoic acid,
(S)-2-amino-6-heptynoic acid, (S)-2-amino-2-methyl-6-heptynoic
acid, N-methyl-.epsilon.-azido-L-lysine, and
N-methyl-.epsilon.-azido-D-lysine. The peptidomimetic precursor is
then deprotected and cleaved from the solid-phase resin by standard
conditions (e.g., strong acid such as 95% TFA). The peptidomimetic
precursor is reacted as a crude mixture or is purified prior to
reaction with a macrocyclization reagent such as a Cu(I) in organic
or aqueous solutions (Rostovtsev et al. (2002), Angew. Chem. Int.
Ed. 41:2596-2599; Tomoe et al. (2002), J. Org. Chem. 67:3057-3064;
Deiters et al. (2003), J. Am. Chem. Soc. 125:11782-11783; Punna et
al. (2005), Angew. Chem. Int. Ed. 44:2215-2220). In one embodiment,
the triazole forming reaction is performed under conditions that
favor .alpha.-helix formation. In one embodiment, the
macrocyclization step is performed in a solvent chosen from the
group consisting of H.sub.2O, THF, CH.sub.3CN, DMF, DIPEA, tBuOH or
a mixture thereof. In another embodiment, the macrocyclization step
is performed in DMF. In some embodiments, the macrocyclization step
is performed in a buffered aqueous or partially aqueous
solvent.
##STR00094##
[0216] In the general method for the synthesis of peptidomimetic
macrocycles shown in Synthetic Scheme 3, the peptidomimetic
precursor contains an azide moiety and an alkyne moiety and is
synthesized by solid-phase peptide synthesis (SPPS) using the
commercially available amino acid N-.alpha.-Fmoc-L-propargylglycine
and the N-.alpha.-Fmoc-protected forms of the amino acids
(S)-2-amino-2-methyl-4-pentynoic acid, (S)-2-amino-6-heptynoic
acid, (S)-2-amino-2-methyl-6-heptynoic acid,
N-methyl-.epsilon.-azido-L-lysine, and
N-methyl-.epsilon.-azido-D-lysine. The peptidomimetic precursor is
reacted with a macrocyclization reagent such as a Cu(I) reagent on
the resin as a crude mixture (Rostovtsev et al. (2002), Angew.
Chem. Int. Ed. 41:2596-2599; Tomoe et al. (2002), J. Org. Chem.
67:3057-3064; Deiters et al. (2003), J. Am. Chem. Soc.
125:11782-11783; Punna et al. (2005), Angew. Chem. Int. Ed.
44:2215-2220). The resultant triazole-containing peptidomimetic
macrocycle is then deprotected and cleaved from the solid-phase
resin by standard conditions (e.g., strong acid such as 95% TFA).
In some embodiments, the macrocyclization step is performed in a
solvent chosen from the group consisting of CH.sub.2Cl.sub.2,
ClCH.sub.2CH.sub.2Cl, DMF, THF, NMP, DIPEA, 2,6-lutidine, pyridine,
DMSO, H.sub.2O or a mixture thereof. In some embodiments, the
macrocyclization step is performed in a buffered aqueous or
partially aqueous solvent
##STR00095##
[0217] In the general method for the synthesis of peptidomimetic
macrocycles shown in Synthetic Scheme 4, the peptidomimetic
precursor contains an azide moiety and an alkyne moiety and is
synthesized by solution-phase or solid-phase peptide synthesis
(SPPS) using the commercially available amino acid
N-.alpha.-Fmoc-L-propargylglycine and the N-.alpha.-Fmoc-protected
forms of the amino acids (S)-2-amino-2-methyl-4-pentynoic acid,
(S)-2-amino-6-heptynoic acid, (S)-2-amino-2-methyl-6-heptynoic
acid, N-methyl-.epsilon.-azido-L-lysine, and
N-methyl-.epsilon.-azido-D-lysine. The peptidomimetic precursor is
then deprotected and cleaved from the solid-phase resin by standard
conditions (e.g., strong acid such as 95% TFA). The peptidomimetic
precursor is reacted as a crude mixture or is purified prior to
reaction with a macrocyclization reagent such as a Ru(II) reagents,
for example Cp*RuCl(PPh.sub.3).sub.2 or [Cp*RuCl].sub.4 (Rasmussen
et al. (2007), Org. Lett. 9:5337-5339; Zhang et al. (2005), J. Am.
Chem. Soc. 127:15998-15999). In some embodiments, the
macrocyclization step is performed in a solvent chosen from the
group consisting of DMF, CH.sub.3CN and THF.
##STR00096##
[0218] In the general method for the synthesis of peptidomimetic
macrocycles shown in Synthetic Scheme 5, the peptidomimetic
precursor contains an azide moiety and an alkyne moiety and is
synthesized by solid-phase peptide synthesis (SPPS) using the
commercially available amino acid N-.alpha.-Fmoc-L-propargylglycine
and the N-.alpha.-Fmoc-protected forms of the amino acids
(S)-2-amino-2-methyl-4-pentynoic acid, (S)-2-amino-6-heptynoic
acid, (S)-2-amino-2-methyl-6-heptynoic acid,
N-methyl-.epsilon.-azido-L-lysine, and
N-methyl-.epsilon.-azido-D-lysine. The peptidomimetic precursor is
reacted with a macrocyclization reagent such as a Ru(II) reagent on
the resin as a crude mixture. For example, the reagent can be
Cp*RuCl(PPh.sub.3).sub.2 or [Cp*RuCl].sub.4 (Rasmussen et al.
(2007), Org. Lett. 9:5337-5339; Zhang et al. (2005), J. Am. Chem.
Soc. 127:15998-15999). In some embodiments, the macrocyclization
step is performed in a solvent chosen from the group consisting of
CH.sub.2Cl.sub.2, ClCH.sub.2CH.sub.2Cl, CH.sub.3CN, DMF, and
THF.
[0219] In some embodiments, a peptidomimetic macrocycle of Formula
I comprises a halogen group substitution on a triazole moiety, for
example an iodo substitution. Such peptidomimetic macrocycles may
be prepared from a precursor having the partial structure and using
the cross-linking methods taught herein. Crosslinkers of any
length, as described herein, may be prepared comprising such
substitutions. In one embodiment, the peptidomimetic macrocycle is
prepared according to the scheme shown below. The reaction is
performed, for example, in the presence of Cu and an amine ligand
such as TEA or TTTA. See, e.g., Hein et al. Angew. Chem., Int. Ed.
2009, 48, 8018-8021.
##STR00097##
[0220] In other embodiments, an iodo-substituted triazole is
generated according to the scheme shown below. For example, the
second step in the reaction scheme below is performed using, for
example, CuI and N-bromosuccinimide (NBS) in the presence of THF
(see, e.g. Zhang et al., J. Org. Chem. 2008, 73, 3630-3633). In
other embodiments, the second step in the reaction scheme shown
below is performed, for example, using CuI and an iodinating agent
such as ICl (see, e.g. Wu et al., Synthesis 2005, 1314-1318.)
##STR00098##
[0221] In some embodiments, an iodo-substituted triazole moiety is
used in a cross-coupling reaction, such as a Suzuki or Sonogashira
coupling, to afford a peptidomimetic macrocycle comprising a
substituted crosslinker. Sonogashira couplings using an alkyne as
shown below may be performed, for example, in the presence of a
palladium catalyst such as Pd(PPh.sub.3).sub.2Cl.sub.2, CuI, and in
the presence of a base such as triethylamine. Suzuki couplings
using an arylboronic or substituted alkenyl boronic acid as shown
below may be performed, for example, in the presence of a catalyst
such as Pd(PPh.sub.3).sub.4, and in the presence of a base such as
K.sub.2CO.sub.3.
##STR00099##
[0222] Any suitable triazole substituent groups which reacts with
the iodo-substituted triazole can be used in Suzuki couplings
described herein. Example triazole substituents for use in Suzuki
couplings are shown below:
##STR00100##
wherein "Cyc" is a suitable aryl, cycloalkyl, cycloalkenyl,
heteroaryl, or heterocyclyl group, unsubstituted or optionally
substituted with an R.sub.a or R.sub.b, group as described
below.
[0223] In some embodiments, the substituent is:
##STR00101##
[0224] Any suitable substituent group which reacts with the
iodo-substituted triazole can be used in Sonogashira couplings
described herein. Example triazole substituents for use in
Sonogashira couplings are shown below:
##STR00102##
wherein "Cyc" is a suitable aryl, cycloalkyl, cycloalkenyl,
heteroaryl, or heterocyclyl group, unsubstituted or optionally
substituted with an R.sub.a or R.sub.b group as described
below.
[0225] In some embodiments, the triazole substituent is:
##STR00103##
[0226] In some embodiments, the Cyc group shown above is further
substituted by at least one R.sub.a or R.sub.b substituent. In some
embodiments, at least one of R.sub.a and R.sub.b is
independently:
##STR00104##
[0227] In other embodiments, the triazole substituent is
##STR00105##
and at least one of R.sub.a and R.sub.b is alkyl (including
hydrogen, methyl, or ethyl), or:
##STR00106##
[0228] The present invention contemplates the use of
non-naturally-occurring amino acids and amino acid analogs in the
synthesis of the peptidomimetic macrocycles described herein. Any
amino acid or amino acid analog amenable to the synthetic methods
employed for the synthesis of stable triazole containing
peptidomimetic macrocycles can be used in the present invention.
For example, L-propargylglycine is contemplated as a useful amino
acid in the present invention. However, other alkyne-containing
amino acids that contain a different amino acid side chain are also
useful in the invention. For example, L-propargylglycine contains
one methylene unit between the .alpha.-carbon of the amino acid and
the alkyne of the amino acid side chain. The invention also
contemplates the use of amino acids with multiple methylene units
between the .alpha.-carbon and the alkyne. Also, the azido-analogs
of amino acids L-lysine, D-lysine, alpha-methyl-L-lysine, and
alpha-methyl-D-lysine are contemplated as useful amino acids in the
present invention. However, other terminal azide amino acids that
contain a different amino acid side chain are also useful in the
invention. For example, the azido-analog of L-lysine contains four
methylene units between the .alpha.-carbon of the amino acid and
the terminal azide of the amino acid side chain. The invention also
contemplates the use of amino acids with fewer than or greater than
four methylene units between the .alpha.-carbon and the terminal
azide. Table 3 shows some amino acids useful in the preparation of
peptidomimetic macrocycles disclosed herein.
TABLE-US-00007 TABLE 3 ##STR00107## ##STR00108## ##STR00109##
##STR00110## ##STR00111## ##STR00112## ##STR00113## ##STR00114##
##STR00115## ##STR00116## ##STR00117## ##STR00118## ##STR00119##
##STR00120## ##STR00121## ##STR00122## ##STR00123## ##STR00124##
##STR00125## ##STR00126##
[0229] Table 3 shows exemplary amino acids useful in the
preparation of peptidomimetic macrocycles disclosed herein.
[0230] In some embodiments the amino acids and amino acid analogs
are of the D-configuration. In other embodiments they are of the
L-configuration. In some embodiments, some of the amino acids and
amino acid analogs contained in the peptidomimetic are of the
D-configuration while some of the amino acids and amino acid
analogs are of the L-configuration. In some embodiments the amino
acid analogs are .alpha.,.alpha.-disubstituted, such as
.alpha.-methyl-L-propargylglycine,
.alpha.-methyl-D-propargylglycine,
.epsilon.-azido-alpha-methyl-L-lysine, and
.epsilon.-azido-alpha-methyl-D-lysine. In some embodiments the
amino acid analogs are N-alkylated, e.g.,
N-methyl-L-propargylglycine, N-methyl-D-propargylglycine,
N-methyl-.epsilon.-azido-L-lysine, and
N-methyl-.epsilon.-azido-D-lysine.
[0231] In some embodiments, the --NH moiety of the amino acid is
protected using a protecting group, including without limitation
-Fmoc and -Boc. In other embodiments, the amino acid is not
protected prior to synthesis of the peptidomimetic macrocycle.
[0232] Additional methods of forming peptidomimetic macrocycles
which are envisioned as suitable to perform the present invention
include those disclosed by Mustapa, M. Firouz Mohd et al., J. Org.
Chem (2003), 68, pp. 8193-8198; Yang, Bin et al. Bioorg Med. Chem.
Lett. (2004), 14, pp. 1403-1406; U.S. Pat. Nos. 5,364,851;
5,446,128; 5,824,483;
6,713,280; and 7,202,332. In such embodiments, amino acid
precursors are used containing an additional substituent R-- at the
alpha position. Such amino acids are incorporated into the
macrocycle precursor at the desired positions, which may be at the
positions where the crosslinker is substituted or, alternatively,
elsewhere in the sequence of the macrocycle precursor. Cyclization
of the precursor is then performed according to the indicated
method.
[0233] For example, a peptidomimetic macrocycle of Formula (II) is
prepared as indicated:
##STR00127## [0234] wherein each AA.sub.1, AA.sub.2, AA.sub.3 is
independently an amino acid side chain.
[0235] In other embodiments, a peptidomimetic macrocycle of Formula
(II) is prepared as indicated:
##STR00128## [0236] wherein each AA.sub.1, AA.sub.2, AA.sub.3 is
independently an amino acid side chain.
[0237] In some embodiments, a peptidomimetic macrocycle is obtained
in more than one isomer, for example due to the configuration of a
double bond within the structure of the crosslinker (E vs Z). Such
isomers can or can not be separable by conventional chromatographic
methods. In some embodiments, one isomer has improved biological
properties relative to the other isomer. In one embodiment, an E
crosslinker olefin isomer of a peptidomimetic macrocycle has better
solubility, better target affinity, better in vivo or in vitro
efficacy, higher helicity, or improved cell permeability relative
to its Z counterpart. In another embodiment, a Z crosslinker olefin
isomer of a peptidomimetic macrocycle has better solubility, better
target affinity, better in vivo or in vitro efficacy, higher
helicity, or improved cell permeability relative to its E
counterpart.
Assays
[0238] The properties of the peptidomimetic macrocycles of the
invention are assayed, for example, by using the methods described
below. In some embodiments, a peptidomimetic macrocycle of the
invention has improved biological properties relative to a
corresponding polypeptide lacking the substituents described
herein.
Assay to Determine .alpha.-Helicity.
[0239] In solution, the secondary structure of polypeptides with
.alpha.-helical domains will reach a dynamic equilibrium between
random coil structures and .alpha.-helical structures, often
expressed as a "percent helicity". Thus, for example, alpha-helical
domains are predominantly random coils in solution, with
.alpha.-helical content usually under 25%. Peptidomimetic
macrocycles with optimized linkers, on the other hand, possess, for
example, an alpha-helicity that is at least two-fold greater than
that of a corresponding uncrosslinked polypeptide. In some
embodiments, macrocycles of the invention will possess an
alpha-helicity of greater than 50%. To assay the helicity of
peptidomimetic macrocycles of the invention, the compounds are
dissolved in an aqueous solution (e.g. 50 mM potassium phosphate
solution at pH 7, or distilled H.sub.2O, to concentrations of 25-50
.mu.M). Circular dichroism (CD) spectra are obtained on a
spectropolarimeter (e.g., Jasco J-710) using standard measurement
parameters (e.g. temperature, 20.degree. C.; wavelength, 190-260 nm
step resolution, 0.5 nm speed, 20 nm/sec; accumulations, 10;
response, 1 sec; bandwidth, 1 nm path length, 0.1 cm). The
.alpha.-helical content of each peptide is calculated by dividing
the mean residue ellipticity (e.g. [.PHI.]222obs) by the reported
value for a model helical decapeptide (Yang et al. (1986), Methods
Enzymol. 130:208)).
Assay to Determine Melting Temperature (Tm).
[0240] A peptidomimetic macrocycle of the invention comprising a
secondary structure such as an .alpha.-helix exhibits, for example,
a higher melting temperature than a corresponding uncrosslinked
polypeptide. Typically peptidomimetic macrocycles of the invention
exhibit Tm of >60.degree. C. representing a highly stable
structure in aqueous solutions. To assay the effect of macrocycle
formation on melting temperature, peptidomimetic macrocycles or
unmodified peptides are dissolved in distilled H.sub.2O (e.g. at a
final concentration of 50 .mu.M) and the Tm is determined by
measuring the change in ellipticity over a temperature range (e.g.
4 to 95.degree. C.) on a spectropolarimeter (e.g., Jasco J-710)
using standard parameters (e.g. wavelength 222 nm step resolution,
0.5 nm; speed, 20 nm/sec; accumulations, 10; response, 1 sec;
bandwidth, 1 nm; temperature increase rate: 1.degree. C./min; path
length, 0.1 cm).
Protease Resistance Assay.
[0241] The amide bond of the peptide backbone is susceptible to
hydrolysis by proteases, thereby rendering peptidic compounds
vulnerable to rapid degradation in vivo. Peptide helix formation,
however, typically buries the amide backbone and therefore may
shield it from proteolytic cleavage. The peptidomimetic macrocycles
of the present invention may be subjected to in vitro trypsin
proteolysis to assess for any change in degradation rate compared
to a corresponding uncrosslinked polypeptide. For example, the
peptidomimetic macrocycle and a corresponding uncrosslinked
polypeptide are incubated with trypsin agarose and the reactions
quenched at various time points by centrifugation and subsequent
HPLC injection to quantitate the residual substrate by ultraviolet
absorption at 280 n Briefly, the peptidomimetic macrocycle and
peptidomimetic precursor (5 mcg) are incubated with trypsin agarose
(Pierce) (S/E.about.125) for 0, 10, 20, 90, and 180 minutes.
Reactions are quenched by tabletop centrifugation at high speed;
remaining substrate in the isolated supernatant is quantified by
HPLC-based peak detection at 280 nm. The proteolytic reaction
displays first order kinetics and the rate constant, k, is
determined from a plot of ln[S] versus time (k=-1Xslope).
Ex Vivo Stability Assay.
[0242] Peptidomimetic macrocycles with optimized linkers possess,
for example, an ex vivo half-life that is at least two-fold greater
than that of a corresponding uncrosslinked polypeptide, and possess
an ex vivo half-life of 12 hours or more. For ex vivo serum
stability studies, a variety of assays may be used. For example, a
peptidomimetic macrocycle and a corresponding uncrosslinked
polypeptide (2 mcg) are incubated with fresh mouse, rat and/or
human serum (2 mL) at 37.degree. C. for 0, 1, 2, 4, 8, and 24
hours. To determine the level of intact compound, the following
procedure may be used: The samples are extracted by transferring
100 .mu.l of sera to 2 ml centrifuge tubes followed by the addition
of 10 .mu.L of 50% formic acid and 500 .mu.L acetonitrile and
centrifugation at 14,000 RPM for 10 min at 4.+-.2.degree. C. The
supernatants are then transferred to fresh 2 ml tubes and
evaporated on Turbovap under N.sub.2<10 psi, 37.degree. C. The
samples are reconstituted in 100 .mu.L of 50:50 acetonitrile:water
and submitted to LC-MS/MS analysis.
In Vitro Binding Assays.
[0243] To assess the binding and affinity of peptidomimetic
macrocycles and peptidomimetic precursors to acceptor proteins, a
fluorescence polarization assay (FPA) is used, for example. The FPA
technique measures the molecular orientation and mobility using
polarized light and fluorescent tracer. When excited with polarized
light, fluorescent tracers (e.g., FITC) attached to molecules with
high apparent molecular weights (e.g. FITC-labeled peptides bound
to a large protein) emit higher levels of polarized fluorescence
due to their slower rates of rotation as compared to fluorescent
tracers attached to smaller molecules (e.g. FITC-labeled peptides
that are free in solution).
[0244] For example, fluoresceinated peptidomimetic macrocycles (25
nM) are incubated with the acceptor protein (25-1000 nM) in binding
buffer (140 mM NaCl, 50 mM Tris-HCL, pH 7.4) for 30 minutes at room
temperature. Binding activity is measured, for example, by
fluorescence polarization on a luminescence spectrophotometer (e.g.
Perkin-Elmer LS50B). Kd values may be determined by nonlinear
regression analysis using, for example, Graphpad Prism software
(GraphPad Software, Inc., San Diego, Calif.). A peptidomimetic
macrocycle of the invention shows, in some instances, similar or
lower Kd than a corresponding uncrosslinked polypeptide.
In Vitro Displacement Assays to Characterize Antagonists of
Peptide-Protein Interactions.
[0245] To assess the binding and affinity of compounds that
antagonize the interaction between a peptide and an acceptor
protein, a fluorescence polarization assay (FPA) utilizing a
fluoresceinated peptidomimetic macrocycle derived from a
peptidomimetic precursor sequence is used, for example. The FPA
technique measures the molecular orientation and mobility using
polarized light and fluorescent tracer. When excited with polarized
light, fluorescent tracers (e.g., FITC) attached to molecules with
high apparent molecular weights (e.g. FITC-labeled peptides bound
to a large protein) emit higher levels of polarized fluorescence
due to their slower rates of rotation as compared to fluorescent
tracers attached to smaller molecules (e.g. FITC-labeled peptides
that are free in solution). A compound that antagonizes the
interaction between the fluoresceinated peptidomimetic macrocycle
and an acceptor protein will be detected in a competitive binding
FPA experiment.
[0246] For example, putative antagonist compounds (1 nM to 1 mM)
and a fluoresceinated peptidomimetic macrocycle (25 nM) are
incubated with the acceptor protein (50 nM) in binding buffer (140
mM NaCl, 50 mM Tris-HCL, pH 7.4) for 30 minutes at room
temperature. Antagonist binding activity is measured, for example,
by fluorescence polarization on a luminescence spectrophotometer
(e.g. Perkin-Elmer LS50B). Kd values may be determined by nonlinear
regression analysis using, for example, Graphpad Prism software
(GraphPad Software, Inc., San Diego, Calif.).
[0247] Any class of molecule, such as small organic molecules,
peptides, oligonucleotides or proteins can be examined as putative
antagonists in this assay.
Assay for Protein-Ligand Binding by Affinity Selection-Mass
Spectrometry
[0248] To assess the binding and affinity of test compounds for
proteins, an affinity-selection mass spectrometry assay is used,
for example. Protein-ligand binding experiments are conducted
according to the following representative procedure outlined for a
system-wide control experiment using 1 .mu.M peptidomimetic
macrocycle plus 5 .mu.M target protein. A 1 .mu.L DMSO aliquot of a
40 .mu.M stock solution of peptidomimetic macrocycle is dissolved
in 19 .mu.L of PBS (Phosphate-buffered saline: 50 mM, pH 7.5
Phosphate buffer containing 150 mM NaCl). The resulting solution is
mixed by repeated pipetting and clarified by centrifugation at 10
000 g for 10 min. To a 4 .mu.L aliquot of the resulting supernatant
is added 4 .mu.L of 10 .mu.M target protein in PBS. Each 8.0 .mu.L
experimental sample thus contains 40 pmol (1.5 .mu.g) of protein at
5.0 .mu.M concentration in PBS plus 1 .mu.M peptidomimetic
macrocycle and 2.5% DMSO. Duplicate samples thus prepared for each
concentration point are incubated for 60 min at room temperature,
and then chilled to 4.degree. C. prior to size-exclusion
chromatography-LC-MS analysis of 5.0 .mu.L injections. Samples
containing a target protein, protein-ligand complexes, and unbound
compounds are injected onto an SEC column, where the complexes are
separated from non-binding component by a rapid SEC step. The SEC
column eluate is monitored using UV detectors to confirm that the
early-eluting protein fraction, which elutes in the void volume of
the SEC column, is well resolved from unbound components that are
retained on the column. After the peak containing the protein and
protein-ligand complexes elutes from the primary UV detector, it
enters a sample loop where it is excised from the flow stream of
the SEC stage and transferred directly to the LC-MS via a valving
mechanism. The (M+3H).sup.3+ ion of the peptidomimetic macrocycle
is observed by ESI-MS at the expected m/z, confirming the detection
of the protein-ligand complex.
Assay for Protein-Ligand Kd Titration Experiments.
[0249] To assess the binding and affinity of test compounds for
proteins, a protein-ligand Kd titration experiment is performed.
Protein-ligand K.sub.d titrations experiments are conducted as
follows: 2 .mu.L DMSO aliquots of a serially diluted stock solution
of titrant peptidomimetic macrocycle (5, 2.5, . . . , 0.098 mM) are
prepared then dissolved in 38 .mu.L of PBS. The resulting solutions
are mixed by repeated pipetting and clarified by centrifugation at
10 000 g for 10 min. To 4.0 .mu.L aliquots of the resulting
supernatants is added 4.0 .mu.L of 10 .mu.M target protein in PBS.
Each 8.0 .mu.L experimental sample thus contains 40 pmol (1.5
.mu.g) of protein at 5.0 .mu.M concentration in PBS, varying
concentrations (125, 62.5, . . . , 0.24 .mu.M) of the titrant
peptide, and 2.5% DMSO. Duplicate samples thus prepared for each
concentration point are incubated at room temperature for 30 min,
then chilled to 4.degree. C. prior to SEC-LC-MS analysis of 2.0
.mu.L injections. The (M+H).sup.1+, (M+2H).sup.2+, (M+3H).sup.3+,
and/or (M+Na).sup.1+ ion is observed by ESI-MS; extracted ion
chromatograms are quantified, then fit to equations to derive the
binding affinity K.sub.d as described in "A General Technique to
Rank Protein-Ligand Binding Affinities and Determine Allosteric vs.
Direct Binding Site Competition in Compound Mixtures." Annis, D.
A.; Nazef, N.; Chuang, C. C.; Scott, M. P.; Nash, H. M. J. Am.
Chem. Soc. 2004, 126, 15495-15503; also in "ALIS: An Affinity
Selection-Mass Spectrometry System for the Discovery and
Characterization of Protein-Ligand Interactions" D. A. Annis, C.-C.
Chuang, and N. Nazef. In Mass Spectromety in Medicinal Chemistry.
Edited by Wanner K, Hofner G: Wiley-VCH; 2007:121-184. Mannhold R,
Kubinyi H, Folkers G (Series Editors): Methods and Principles in
Medicinal Chemistry.
Assay for Competitive Binding Experiments by Affinity
Selection-Mass Spectrometry
[0250] To determine the ability of test compounds to bind
competitively to proteins, an affinity selection mass spectrometry
assay is performed, for example. A mixture of ligands at 40 .mu.M
per component is prepared by combining 2 .mu.L aliquots of 400
.mu.M stocks of each of the three compounds with 14 .mu.L of DMSO.
Then, 1 .mu.L aliquots of this 40 .mu.M per component mixture are
combined with 1 .mu.L DMSO aliquots of a serially diluted stock
solution of titrant peptidomimetic macrocycle (10, 5, 2.5, . . . ,
0.078 mM). These 2 .mu.L samples are dissolved in 38 .mu.L of PBS.
The resulting solutions were mixed by repeated pipetting and
clarified by centrifugation at 10 000 g for 10 m. To 4.0 .mu.L
aliquots of the resulting supernatants is added 4.0 .mu.L of 10
.mu.M target protein in PBS. Each 8.0 .mu.L experimental sample
thus contains 40 pmol (1.5 .mu.g) of protein at 5.0 .mu.M
concentration in PBS plus 0.5 .mu.M ligand, 2.5% DMSO, and varying
concentrations (125, 62.5, . . . , 0.98 .mu.M) of the titrant
peptidomimetic macrocycle. Duplicate samples thus prepared for each
concentration point are incubated at room temperature for 60 min,
then chilled to 4.degree. C. prior to SEC-LC-MS analysis of 2.0 L
injections. Additional details on these and other methods are
provided in "A General Technique to Rank Protein-Ligand Binding
Affinities and Determine Allosteric vs. Direct Binding Site
Competition in Compound Mixtures." Annis, D. A.; Nazef, N.; Chuang,
C. C.; Scott, M. P.; Nash, H. M. J. Am. Chem. Soc. 2004, 126,
15495-15503; also in "ALIS: An Affinity Selection-Mass Spectrometry
System for the Discovery and Characterization of Protein-Ligand
Interactions" D. A. Annis, C.-C. Chuang, and N. Nazef. In Mass
Spectrometry in Medicinal Chemistry. Edited by Wanner K, Hofner G:
Wiley-VCH; 2007:121-184. Mannhold R, Kubinyi H, Folkers G (Series
Editors): Methods and Principles in Medicinal Chemistry.
Binding Assays in Intact Cells.
[0251] It is possible to measure binding of peptides or
peptidomimetic macrocycles to their natural acceptors in intact
cells by immunoprecipitation experiments. For example, intact cells
are incubated with fluoresceinated (FITC-labeled) compounds for 4
hrs in the absence of serum, followed by serum replacement and
further incubation that ranges from 4-18 hrs. Cells are then
pelleted and incubated in lysis buffer (50 mM Tris [pH 7.6], 150 mM
NaCl, 1% CHAPS and protease inhibitor cocktail) for 10 minutes at
4.degree. C. Extracts are centrifuged at 14,000 rpm for 15 minutes
and supernatants collected and incubated with 10 .mu.l goat
anti-FITC antibody for 2 hrs, rotating at 4.degree. C. followed by
further 2 hrs incubation at 4.degree. C. with protein A/G Sepharose
(50 .mu.l of 50% bead slurry). After quick centrifugation, the
pellets are washed in lysis buffer containing increasing salt
concentration (e.g. 150, 300, 500 mM). The beads are then
re-equilibrated at 150 mM NaCl before addition of SDS-containing
sample buffer and boiling. After centrifugation, the supemrnatants
are optionally electrophoresed using 4-12% gradient Bis-Tris gels
followed by transfer into Immobilon-P membranes. After blocking,
blots are optionally incubated with an antibody that detects FITC
and also with one or more antibodies that detect proteins that bind
to the peptidomimetic macrocycle.
Cellular Penetrability Assays.
[0252] To measure the cell penetrability of peptidomimetic
macrocycles and corresponding uncrosslinked macrocycle, intact
cells are incubated with fluoresceinated peptidomimetic macrocycles
or corresponding uncrosslinked macrocycle (10 .mu.M) for 4 hrs in
serum free media at 37.degree. C., washed twice with media and
incubated with trypsin (0.25%) for 10 min at 37.degree. C. The
cells are washed again and resuspended in PBS. Cellular
fluorescence is analyzed, for example, by using either a
FACSCalibur flow cytometer or Cellomics' KineticScan.RTM. HCS
Reader.
In Vivo Stability Assay.
[0253] To investigate the in vivo stability of the peptidomimetic
macrocycles, the compounds are, for example, administered to mice
and/or rats by IV, IP, PO or inhalation routes at concentrations
ranging from 0.1 to 50 mg/kg and blood specimens withdrawn at 0',
5', 15', 30', 1 hr, 4 hrs, 8 hrs and 24 hours post-injection.
Levels of intact compound in 25 .mu.L of fresh serum are then
measured by LC-MS/MS as above.
Clinical Trials.
[0254] To determine the suitability of the peptidomimetic
macrocycles of the invention for treatment of humans, clinical
trials are performed. For example, patients diagnosed with a muscle
wasting disease or lipodystrophy and in need of treatment are
selected and separated in treatment and one or more control groups,
wherein the treatment group is administered a peptidomimetic
macrocycle of the invention, while the control groups receive a
placebo or a known HIF drug. The treatment safety and efficacy of
the peptidomimetic macrocycles of the invention can thus be
evaluated by performing comparisons of the patient groups with
respect to factors such as survival and quality-of-life. In this
example, the patient group treated with a peptidomimetic macrocycle
show improved long-term survival compared to a patient control
group treated with a placebo.
Pharmaceutical Compositions and Routes of Administration
[0255] In some embodiments, the present invention provides a
pharmaceutical composition comprising a peptidomimetic macrocycle
of the invention and a pharmaceutically acceptable carrier.
[0256] The peptidomimetic macrocycles of the invention also include
pharmaceutically acceptable derivatives or prodrugs thereof. A
"pharmaceutically acceptable derivative" means any pharmaceutically
acceptable salt, ester, salt of an ester, pro-drug or other
derivative of a compound of this invention which, upon
administration to a recipient, is capable of providing (directly or
indirectly) a compound of this invention. Particularly favored
pharmaceutically acceptable derivatives are those that increase the
bioavailability of the compounds of the invention when administered
to a mammal (e.g., by increasing absorption into the blood of an
orally administered compound) or which increases delivery of the
active compound to a biological compartment (e.g., the brain or
lymphatic system) relative to the parent species. Some
pharmaceutically acceptable derivatives include a chemical group
which increases aqueous solubility or active transport across the
gastrointestinal mucosa.
[0257] In some embodiments, the peptidomimetic macrocycles of the
invention are modified by covalently or non-covalently joining
appropriate functional groups to enhance selective biological
properties. Such modifications include those which increase
biological penetration into a given biological compartment (e.g.
blood, lymphatic system, central nervous system), increase oral
availability, increase solubility to allow administration by
injection, alter metabolism, and alter rate of excretion.
[0258] Pharmaceutically acceptable salts of the compounds of this
invention include those derived from pharmaceutically acceptable
inorganic and organic acids and bases. Examples of suitable acid
salts include acetate, adipate, benzoate, benzenesulfonate,
butyrate, citrate, digluconate, dodecylsulfate, formate, fumarate,
glycolate, hemisulfate, heptanoate, hexanoate, hydrochloride,
hydrobroide, hydroiodide, lactate, maleate, malonate,
methanesulfonate, 2-naphthalenesulfonate, nicotinate, nitrate,
palmoate, phosphate, picrate, pivalate, propionate, salicylate,
succinate, sulfate, tartrate, tosylate and undecanoate. Salts
derived from appropriate bases include alkali metal (e.g., sodium),
alkaline earth metal (e.g., magnesium), ammonium and
N-(alkyl).sub.4.sup.+ salts.
[0259] For preparing pharmaceutical compositions from the compounds
of the present invention, pharmaceutically acceptable carriers
include either solid or liquid carriers. Solid form preparations
include powders, tablets, pills, capsules, cachets, suppositories,
and dispersible granules. A solid carrier can be one or more
substances, which also acts as diluents, flavoring agents, binders,
preservatives, tablet disintegrating agents, or an encapsulating
material. Details on techniques for formulation and administration
are well described in the scientific and patent literature, see,
e.g., the latest edition of Remington's Pharmaceutical Sciences,
Maack Publishing Co, Easton Pa.
[0260] In powders, the carrier is a finely divided solid, which is
in a mixture with the finely divided active component. In tablets,
the active component is mixed with the carrier having the necessary
binding properties in suitable proportions and compacted in the
shape and size desired.
[0261] Suitable solid excipients are carbohydrate or protein
fillers include, but are not limited to sugars, including lactose,
sucrose, mannitol, or sorbitol; starch from corn, wheat, rice,
potato, or other plants; cellulose such as methyl cellulose,
hydroxypropylmethyl-cellulose, or sodium carboxymethylcellulose;
and gums including arabic and tragacanth; as well as proteins such
as gelatin and collagen. If desired, disintegrating or solubilizing
agents are added, such as the cross-linked polyvinyl pyrrolidone,
agar, alginic acid, or a salt thereof, such as sodium alginate.
[0262] Liquid form preparations include solutions, suspensions, and
emulsions, for example, water or water/propylene glycol solutions.
For parenteral injection, liquid preparations can be formulated in
solution in aqueous polyethylene glycol solution.
[0263] The pharmaceutical preparation is preferably in unit dosage
form. In such form the preparation is subdivided into unit doses
containing appropriate quantities of the active component. The unit
dosage form can be a packaged preparation, the package containing
discrete quantities of preparation, such as packeted tablets,
capsules, and powders in vials or ampoules. Also, the unit dosage
form can be a capsule, tablet, cachet, or lozenge itself, or it can
be the appropriate number of any of these in packaged form.
[0264] When the compositions of this invention comprise a
combination of a peptidomimetic macrocycle and one or more
additional therapeutic or prophylactic agents, both the compound
and the additional agent should be present at dosage levels of
between about 1 to 100%, and more preferably between about 5 to 95%
of the dosage normally administered in a monotherapy regimen. In
some embodiments, the additional agents are administered
separately, as part of a multiple dose regimen, from the compounds
of this invention. Alternatively, those agents are part of a single
dosage form, mixed together with the compounds of this invention in
a single composition.
[0265] In some embodiments, the compositions are present as unit
dosage forms that can deliver, for example, from about 0.0001 mg to
about 1,000 mg of the peptidomimetic macrocycles, salts thereof,
prodrugs thereof, derivatives thereof, or any combination of these.
Thus, the unit dosage forms can deliver, for example, in some
embodiments, from about 1 mg to about 900 mg, from about 1 mg to
about 800 mg, from about 1 mg to about 700 mg, from about 1 mg to
about 600 mg, from about 1 mg to about 500 mg, from about 1 mg to
about 400 mg, from about 1 mg to about 300 mg, from about 1 mg to
about 200 mg, from about 1 mg to about 100 mg, from about 1 mg to
about 10 mg, from about 1 mg to about 5 mg, from about 0.1 mg to
about 10 mg, from about 0.1 mg to about 5 mg, from about 10 mg to
about 1,000 mg, from about 50 mg to about 1,000 mg, from about 100
mg to about 1,000 mg, from about 200 mg to about 1,000 mg, from
about 300 mg to about 1,000 mg, from about 400 mg to about 1,000
mg, from about 500 mg to about 1,000 mg, from about 600 mg to about
1,000 mg, from about 700 mg to about 1,000 mg, from about 800 mg to
about 1,000 mg, from about 900 mg to about 1,000 mg, from about 10
mg to about 900 mg, from about 100 mg to about 800 mg, from about
200 mg to about 700 mg, or from about 300 mg to about 600 mg of the
peptidomimetic macrocycles, salts thereof, prodrugs thereof,
derivatives thereof, or any combination of these.
[0266] In some embodiments, the compositions are present as unit
dosage forms that can deliver, for example, about 1 mg, about 2 mg,
about 3 mg, about 4 mg, about 5 mg, about 6 mg, about 7 mg, about 8
mg, about 9 mg, about 10 mg, about 20 mg, about 30 mg, about 40 mg,
about 50 mg, about 60 mg, about 70 mg, about 80 mg, about 90 mg,
about 100 mg, about 150 mg, about 200 mg, about 250 mg, about 300
mg, about 350 mg, about 400 mg, about 500 mg, about 600 mg, about
700 mg, about 800 mg, or about 800 mg of peptidomimetic
macrocycles, salts thereof, prodrugs thereof, derivatives thereof,
or any combination of these.
[0267] Suitable routes of administration include, but are not
limited to, oral, intravenous, rectal, aerosol, parenteral,
ophthalmic, pulmonary, transmucosal, transdermal, vaginal, otic,
nasal, and topical administration. In addition, by way of example
only, parenteral delivery includes intramuscular, subcutaneous,
intravenous, intramedullary injections, as well as intrathecal,
direct intraventricular, intraperitoneal, intralymphatic, and
intranasal injections.
[0268] In certain embodiments, a composition as described herein is
administered in a local rather than systemic manner, for example,
via injection of the compound directly into an organ. In specific
embodiments, long acting formulations are administered by
implantation (for example subcutaneously or intramuscularly) or by
intramuscular injection. Furthermore, in other embodiments, the
drug is delivered in a targeted drug delivery system, for example,
in a liposome coated with organ-specific antibody. In such
embodiments, the liposomes are targeted to and taken up selectively
by the organ. In yet other embodiments, the compound as described
herein is provided in the form of a rapid release formulation, in
the form of an extended release formulation, or in the form of an
intermediate release formulation. In yet other embodiments, the
compound described herein is administered topically.
[0269] In another embodiment, compositions described herein are
formulated for oral administration. Compositions described herein
are formulated by combining a peptidomimetic macrocycle with, e.g.,
pharmaceutically acceptable carriers or excipients. In various
embodiments, the compounds described herein are formulated in oral
dosage forms that include, by way of example only, tablets,
powders, pills, dragees, capsules, liquids, gels, syrups, elixirs,
slurries, suspensions and the like.
[0270] In certain embodiments, pharmaceutical preparations for oral
use are obtained by mixing one or more solid excipient with one or
more of the peptidomimetic macrocycles described herein, optionally
grinding the resulting mixture, and processing the mixture of
granules, after adding suitable auxiliaries, if desired, to obtain
tablets or dragee cores. Suitable excipients are, in particular,
fillers such as sugars, including lactose, sucrose, mannitol, or
sorbitol; cellulose preparations such as: for example, maize
starch, wheat starch, rice starch, potato starch, gelatin, gum
tragacanth, methylcellulose, microcrystalline cellulose,
hydroxypropylmethylcellulose, sodium carboxymethylcellulose; or
others such as: polyvinylpyrrolidone (PVP or povidone) or calcium
phosphate. In specific embodiments, disintegrating agents are
optionally added. Disintegrating agents include, by way of example
only, cross-linked croscarmellose sodium, polyvinylpyrrolidone,
agar, or alginic acid or a salt thereof such as sodium
alginate.
[0271] In one embodiment, dosage forms, such as dragee cores and
tablets, are provided with one or more suitable coating. In
specific embodiments, concentrated sugar solutions are used for
coating the dosage form. The sugar solutions optionally contain
additional components, such as by way of example only, gum arabic,
talc, polyvinylpyrrolidone, carbopol gel, polyethylene glycol,
and/or titanium dioxide, lacquer solutions, and suitable organic
solvents or solvent mixtures. Dyestuffs and/or pigments are also
optionally added to the coatings for identification purposes.
Additionally, the dyestuffs and/or pigments are optionally utilized
to characterize different combinations of active compound
doses.
[0272] In certain embodiments, therapeutically effective amounts of
at least one of the peptidomimetic macrocycles described herein are
formulated into other oral dosage forms. Oral dosage forms include
push-fit capsules made of gelatin, as well as soft, sealed capsules
made of gelatin and a plasticizer, such as glycerol or sorbitol. In
specific embodiments, push-fit capsules contain the active
ingredients in admixture with one or more filler. Fillers include,
by way of example only, lactose, binders such as starches, and/or
lubricants such as talc or magnesium stearate and, optionally,
stabilizers. In other embodiments, soft capsules contain one or
more active compound that is dissolved or suspended in a suitable
liquid. Suitable liquids include, by way of example only, one or
more fatty oil, liquid paraffin, or liquid polyethylene glycol. In
addition, stabilizers are optionally added.
[0273] In other embodiments, therapeutically effective amounts of
at least one of the peptidomimetic macrocycles described herein are
formulated for buccal or sublingual administration. Formulations
suitable for buccal or sublingual administration include, by way of
example only, tablets, lozenges, or gels. In still other
embodiments, the peptidomimetic macrocycles described herein are
formulated for parenteral injection, including formulations
suitable for bolus injection or continuous infusion. In specific
embodiments, formulations for injection are presented in unit
dosage form (e.g., in ampoules) or in multi-dose containers.
Preservatives are, optionally, added to the injection formulations.
In still other embodiments, pharmaceutical compositions are
formulated in a form suitable for parenteral injection as a sterile
suspensions, solutions or emulsions in oily or aqueous vehicles.
Parenteral injection formulations optionally contain formulatory
agents such as suspending, stabilizing and/or dispersing agents. In
specific embodiments, pharmaceutical formulations for parenteral
administration include aqueous solutions of the active compounds in
water-soluble form. In additional embodiments, suspensions of the
active compounds are prepared as appropriate oily injection
suspensions. Suitable lipophilic solvents or vehicles for use in
the pharmaceutical compositions described herein include, by way of
example only, fatty oils such as sesame oil, or synthetic fatty
acid esters, such as ethyl oleate or triglycerides, or liposomes.
In certain specific embodiments, aqueous injection suspensions
contain substances which increase the viscosity of the suspension,
such as sodium carboxymethyl cellulose, sorbitol, or dextran.
Optionally, the suspension contains suitable stabilizers or agents
which increase the solubility of the compounds to allow for the
preparation of highly concentrated solutions. Alternatively, in
other embodiments, the active ingredient is in powder form for
constitution with a suitable vehicle, e.g., sterile pyrogen-free
water, before use.
[0274] Pharmaceutical compositions herein can be administered, for
example, once or twice or three or four or five or six times per
day, or once or twice or three or four or five or six times per
week, and can be administered, for example, for a day, a week, a
month, 3 months, six months, a year, five years, or for example ten
years.
Methods of Use
[0275] In one aspect, the present invention provides novel
peptidomimetic macrocycles that are useful in competitive binding
assays to identify agents which bind to the natural ligand(s) of
the proteins or peptides upon which the peptidomimetic macrocycles
are modeled. For example, in the HIF1.alpha./CBP/p300 system,
labeled peptidomimetic macrocycles based on HIF1.alpha. can be used
in a CBP/p300 binding assay along with small molecules that
competitively bind to CBP/p300. Competitive binding studies allow
for rapid in vitro evaluation and determination of drug candidates
specific for the HIF1.alpha./CBP/p300 system. Such binding studies
may be performed with any of the peptidomimetic macrocycles
disclosed herein and their binding partners.
[0276] The invention further provides for the generation of
antibodies against the peptidomimetic macrocycles. In some
embodiments, these antibodies specifically bind both the
peptidomimetic macrocycle and the precursor peptides, such as
HIF1.alpha., to which the peptidomimetic macrocycles are related.
Such antibodies, for example, disrupt the native protein-protein
interaction, for example, binding between HIF1.alpha. and
CBP/p300.
[0277] In other aspects, the present invention provides for both
prophylactic and therapeutic methods of treating a subject at risk
of (or susceptible to) a disorder or having a disorder associated
with aberrant (e.g., insufficient or excessive) expression or
activity of the molecules including HIF-family proteins, such as
HIF1.alpha..
[0278] In another embodiment, a disorder is caused, at least in
part, by an abnormal level of HIF1.alpha., (e.g. over or under
expression), or by the presence of HIF1.alpha. exhibiting abnormal
activity. As such, the reduction in the level and/or activity of
HIF1.alpha., or the enhancement of the level and/or activity of
HIF1.alpha., by peptidomimetic macrocycles derived from
HIF1.alpha., is used, for example, to ameliorate or reduce the
adverse symptoms of the disorder.
[0279] In another aspect, the present invention provides methods
for treating or preventing a disease including hyperproliferative
disease and inflammatory disorder by interfering with the
interaction or binding between binding partners, for example,
between HIF1.alpha. and CBP/p300. These methods comprise
administering an effective amount of a compound of the invention to
a warm blooded animal, including a human. In some embodiments, the
administration of the compounds of the present invention induces
cell growth arrest or apoptosis.
[0280] As used herein, the term "treatment" is defined as the
application or administration of a therapeutic agent to a patient,
or application or administration of a therapeutic agent to an
isolated tissue or cell line from a patient, who has a disease, a
symptom of disease or a predisposition toward a disease, with the
purpose to cure, heal, alleviate, relieve, alter, remedy,
ameliorate, improve or affect the disease, the symptoms of disease
or the predisposition toward disease.
[0281] In some embodiments, the peptidomimetic macrocycles of the
invention is used to treat, prevent, and/or diagnose cancers and
neoplastic conditions. As used herein, the terms "cancer",
"hyperproliferative" and "neoplastic" refer to cells having the
capacity for autonomous growth, i.e., an abnormal state or
condition characterized by rapidly proliferating cell growth.
Hyperproliferative and neoplastic disease states may be categorized
as pathologic, i.e., characterizing or constituting a disease
state, or may be categorized as non-pathologic, i.e., a deviation
from normal but not associated with a disease state. The term is
meant to include all types of cancerous growths or oncogenic
processes, metastatic tissues or malignantly transformed cells,
tissues, or organs, irrespective of histopathologic type or stage
of invasiveness. A metastatic tumor can arise from a multitude of
primary tumor types, including but not limited to those of breast,
lung, liver, colon and ovarian origin. "Pathologic
hyperproliferative" cells occur in disease states characterized by
malignant tumor growth. Examples of non-pathologic
hyperproliferative cells include proliferation of cells associated
with wound repair. Examples of cellular proliferative and/or
differentiative disorders include cancer, e.g., carcinoma, sarcoma,
or metastatic disorders. In some embodiments, the peptidomimetic
macrocycles are novel therapeutic agents for controlling breast
cancer, ovarian cancer, colon cancer, lung cancer, metastasis of
such cancers and the like.
[0282] Examples of cancers or neoplastic conditions include, but
are not limited to, a fibrosarcoma, myosarcoma, liposarcoma,
chondrosarcoma, osteogenic sarcoma, chordoma, angiosarcoma,
endotheliosarcoma, lymphangiosarcoma, lymphangioendotheliosarcoma,
synovioma, mesothelioma, Ewings tumor, leiomyosarcoma,
rhabdomyosarcoma, gastric cancer, esophageal cancer, rectal cancer,
pancreatic cancer, ovarian cancer, prostate cancer, uterine cancer,
cancer of the head and neck, skin cancer, brain cancer, squamous
cell carcinoma, sebaceous gland carcinoma, papillary carcinoma,
papillary adenocarcinoma, cystadenocarcinoma, medullary carcinoma,
bronchogenic carcinoma, renal cell carcinoma, hepatoma, bile duct
carcinoma, choriocarcinoma, seminoma, embryonal carcinoma, Wilm's
tumor, cervical cancer, testicular cancer, small cell lung
carcinoma, non-small cell lung carcinoma, bladder carcinoma,
epithelial carcinoma, glioma, astrocytoma, medulloblastoma,
craniopharyngioma, ependymoma, pinealoma, hemangioblastoma,
acoustic neuroa, oligodendroglioma, meningioma, melanoma,
neuroblastoma, retinoblastoma, leukemia, lymphoma, or Kaposi
sarcoma.
[0283] Examples of proliferative disorders include hematopoietic
neoplastic disorders. As used herein, the term "hematopoetic
neoplastic disorders" includes diseases involving
hyperplastic/neoplastic cells of hematopoietic origin, e.g.,
arising from myeloid, lymphoid or erythroid lineages, or precursor
cells thereof. Preferably, the diseases arise from poorly
differentiated acute leukemias, e.g., erythroblastic leukemia and
acute megakaryoblastic leukemia. Additional exemplary myeloid
disorders include, but are not limited to, acute promyeloid
leukemia (APML), acute myelogenous leukemia (AML) and chronic
myelogenous leukemia (CML); lymphoid malignancies include, but are
not limited to acute lymphoblastic leukemia (ALL) which includes
B-lineage ALL and T-lineage ALL, chronic lymphocytic leukemia
(CLL), prolymphocytic leukemia (PLL), haiy cell leukemia (HLL) and
Waldenstrom's macroglobulinemia (WM). Additional forms of malignant
lymphomas include, but are not limited to non-Hodgkin lymphoma and
variants thereof, peripheral T cell lymphomas, adult T cell
leukemia/lymphoma (ATL), cutaneous T-cell lymphoma (CTCL), large
granular lymphocytic leukemia (LGF), Hodgkin's disease and
Reed-Stemberg disease.
[0284] Examples of cellular proliferative and/or differentiative
disorders of the breast include, but are not limited to,
proliferative breast disease including, e.g., epithelial
hyperplasia, sclerosing adenosis, and small duct papillomas;
tumors, e.g., stromal tumors such as fibroadenoma, phyllodes tumor,
and sarcomas, and epithelial tumors such as large duct papilloma
carcinoma of the breast including in situ (noninvasive) carcinoma
that includes ductal carcinoma in situ (including Pagets disease)
and lobular carcinoma in situ, and invasive (infiltrating)
carcinoma including, but not limited to, invasive ductal carcinoma,
invasive lobular carcinoma, medullary carcinoma, colloid (mucinous)
carcinoma, tubular carcinoma, and invasive papillary carcinoma, and
miscellaneous malignant neoplasms. Disorders in the male breast
include, but are not limited to, gynecomastia and carcinoma.
[0285] Examples of cellular proliferative and/or differentiative
disorders of the lung include, but are not limited to, bronchogenic
carcinoma, including paraneoplastic syndromes, bronchioloalveolar
carcinoma, neuroendocrine tumors, such as bronchial carcinoid,
miscellaneous tumors, and metastatic tumors; pathologies of the
pleura, including inflammatory pleural effusions, noninflamatory
pleural effusions, pneumothorax, and pleural tumors, including
solitary fibrous tumors (pleural fibroma) and malignant
mesothelioma.
[0286] Examples of cellular proliferative and/or differentiative
disorders of the colon include, but are not limited to,
non-neoplastic polyps, adenomas, familial syndromes, colorectal
carcinogenesis, colorectal carcinoma, and carcinoid tumors.
[0287] Examples of cellular proliferative and/or differentiative
disorders of the liver include, but are not limited to, nodular
hyperplasias, adenomas, and malignant tumors, including primary
carcinoma of the liver and metastatic tumors.
[0288] Examples of cellular proliferative and/or differentiative
disorders of the ovary include, but are not limited to, ovarian
tumors such as, tumors of coelomic epithelium, serous tumors,
mucinous tumors, endometrioid tumors, clear cell adenocarcinoma,
cystadenofibroma, Brenner tumor, surface epithelial tumors; germ
cell tumors such as mature (benign) teratomas, monodermal
teratomas, immature malignant teratomas, dysgerminoma, endodermal
sinus tumor, choriocarcinoma sex cord-stomal tumors such as,
granulosa-theca cell tumors, thecomafibromas, androblastomas, hill
cell tumors, and gonadoblastoma; and metastatic tumors such as
Krukenberg tumors.
[0289] In other or further embodiments, the peptidomimetic
macrocycles described herein are used to treat, prevent or diagnose
conditions characterized by overactive cell death or cellular death
due to physiologic insult, etc. Some examples of conditions
characterized by premature or unwanted cell death are or
alternatively unwanted or excessive cellular proliferation include,
but are not limited to hypocellular/hypoplastic,
acellular/aplastic, or hypercellular/hyperplastic conditions. Some
examples include hematologic disorders including but not limited to
fanconi anemia, aplastic anemia, thalaessemia, congenital
neutropenia, and myelodysplasia.
[0290] In other or further embodiments, the peptidomimetic
macrocycles of the invention that act to decrease apoptosis are
used to treat disorders associated with an undesirable level of
cell death. Thus, in some embodiments, the anti-apoptotic
peptidomimetic macrocycles of the invention are used to treat
disorders such as those that lead to cell death associated with
viral infection, e.g., infection associated with infection with
human immunodeficiency virus (HIV). A wide variety of neurological
diseases are characterized by the gradual loss of specific sets of
neurons. One example is Alzheimer's disease (AD). Azheimer's
disease is characterized by loss of neurons and synapses in the
cerebral cortex and certain subcortical regions. This loss results
in gross atrophy of the affected regions. Both amyloid plaques and
neurofibrillary tangles are visible in brains of those afflicted by
AD. Alzheimer's disease has been identified as a protein misfolding
disease, due to the accumulation of abnormally folded A-beta and
tau proteins in the brain. Plaques are made up of .beta.-amyloid.
.beta.-amyloid is a fragment from a larger protein called amyloid
precursor protein (APP). APP is critical to neuron growth, survival
and post-injury repair. In AD, an unknown process causes APP to be
cleaved into smaller fragments by enzymes through proteolysis. One
of these fragments is fibrils of .beta.-amyloid, which form clumps
that deposit outside neurons in dense formations known as senile
plaques. Plaques continue to grow into insoluble twisted fibers
within the nerve cell, often called tangles. Disruption of the
interaction between .beta.-amyloid and its native receptor is
therefore important in the treatment of AD. The anti-apoptotic
peptidomimetic macrocycles of the invention are used, in some
embodiments, in the treatment of AD and other neurological
disorders associated with cell apoptosis. Such neurological
disorders include Alzheimer's disease, Parkinson's disease,
amyotrophic lateral sclerosis (ALS) retinitis pigmentosa, spinal
muscular atrophy, and various forms of cerebellar degeneration. The
cell loss in these diseases does not induce an inflammatory
response, and apoptosis appears to be the mechanism of cell
death.
[0291] In addition, a number of hematologic diseases are associated
with a decreased production of blood cells. These disorders include
anemia associated with chronic disease, aplastic anemia, chronic
neutropenia, and the myelodysplastic syndromes. Disorders of blood
cell production, such as myelodysplastic syndrome and some forms of
aplastic anemia, are associated with increased apoptotic cell death
within the bone marrow. These disorders could result from the
activation of genes that promote apoptosis, acquired deficiencies
in stromal cells or hematopoietic survival factors, or the direct
effects of toxins and mediators of immune responses. Two common
disorders associated with cell death are myocardial infarctions and
stroke. In both disorders, cells within the central area of
ischemia, which is produced in the event of acute loss of blood
flow, appear to die rapidly as a result of necrosis. However,
outside the central ischemic zone, cells die over a more protracted
time period and morphologically appear to die by apoptosis. In
other or further embodiments, the anti-apoptotic peptidomimetic
macrocycles of the invention are used to treat all such disorders
associated with undesirable cell death.
[0292] Some examples of neurologic disorders that are treated with
the peptidomimetic macrocycles described herein include but are not
limited to Alzheimer's Disease, Down's Syndrome, Dutch Type
Hereditary Cerebral Hemorrhage Amyloidosis, Reactive Amyloidosis,
Familial Amyloid Nephropathy with Urticaria and Deafness,
Muckle-Wells Syndrome, Idiopathic Myeloma;
Macroglobulinemia-Associated Myeloma, Familial Amyloid
Polyneuropathy, Familial Amyloid Cardiomyopathy, Isolated Cardiac
Amyloid, Systemic Senile Amyloidosis, Adult Onset Diabetes,
Insulinoma, Isolated Atrial Amyloid, Medullary Carcinoma of the
Thyroid, Familial Amyloidosis, Hereditary Cerebral Hemorrhage With
Amyloidosis, Familial Amyloidotic Polyneuropathy, Scrapie,
Creutzfeldt-Jacob Disease, Gerstmann Straussler-Scheinker Syndrome,
Bovine Spongiform Encephalitis, a prion-mediated disease, and
Huntington's Disease.
[0293] In another embodiment, the peptidomimetic macrocycles
described herein are used to treat, prevent or diagnose
inflammatory disorders. Numerous types of inflammatory disorders
exist. Certain inflammatory diseases are associated with the immune
system, for example, autoimmune diseases. Autoimmune diseases arise
from an overactive immune response of the body against substances
and tissues normally present in the body, i.e. self antigens. In
other words, the immune system attacks its own cells. Autoimmune
diseases are a major cause of immune-mediated diseases. Rheumatoid
arthritis is an example of an autoimmune disease, in which the
immune system attacks the joints, where it causes inflammation
(i.e. arthritis) and destruction. It can also damage some organs,
such as the lungs and skin. Rheumatoid arthritis can lead to
substantial loss of functioning and mobility. Rheumatoid arthritis
is diagnosed with blood tests especially the rheumatoid factor
test. Some examples of autoimmune diseases that are treated with
the peptidomimetic macrocycles described herein include, but are
not limited to, acute disseminated encephalomyelitis (ADEM),
Addison's disease, ankylosing spondylitis, antiphospholipid
antibody syndrome (APS), autoimmune hemolytic anemia, autoimmune
hepatitis, autoimmune inner ear disease, Bechet's disease, bullous
pemphigoid, coeliac disease, Chagas disease, Churg-Strauss
syndrome, chronic obstructive pulmonary disease (COPD), Cron's
disease, dermatomyositis, diabetes mellitus type 1, endometriosis,
Goodpastures syndrome, Graves' disease, Guillain-Barrd syndrome
(GBS), Hashimotos disease, Hidradenitis suppurativa, idiopathic
thrombocytopenic purpura, inflammatory bowl disease (IBD),
interstitial cystitis, lupus erythematosus, morphea, multiple
sclerosis, myasthenia gravis, narcolepsy, neuromyotonia, pemphigus
vulgaris, pernicious anaemia, Polymyositis, polymyalgia rheumatica,
primary biliary cirrhosis, psoriasis, rheumatoid arthritis,
schizophrenia, scleroderma, Sjgrens syndrome, temporal arteritis
(also known as "giant cell arteritis"), Takayasus arteritis,
Vasculitis, Vitiligo, and Wegener's granulomatosis.
[0294] Some examples of other types of inflammatory disorders that
are treated with the peptidomimetic macrocycles described herein
include, but are not limited to, allergy including allergic
rhinitis/sinusitis, skin allergies (urticaria/hives, angioedema,
atopic dermatitis), food allergies, drug allergies, insect
allergies, and rare allergic disorders such as mastocytosis,
asthma, arthritis including osteoarthritis, rheumatoid arthritis,
and spondyloarthropathies, primary angitis of the CNS, sarcoidosis,
organ transplant rejection, fibromyalgia, fibrosis, pancreatitis,
and pelvic inflammatory disease.
[0295] Examples of cardiovascular disorders (e.g., inflammatory
disorders) that are treated or prevented with the peptidomimetic
macrocycles of the invention include, but are not limited to,
aortic valve stenosis, atherosclerosis, myocardial infarction,
stroke, thrombosis, aneurism, heart failure, ischemic heart
disease, angina pectoris, sudden cardiac death, hypertensive heart
disease; non-coronary vessel disease, such as arteriolosclerosis,
small vessel disease, nephropathy, hypertriglyceridemia,
hypercholesterolemia, hyperlipidemia, xanthomatosis, asthma,
hypertension, emphysema and chronic pulmonary disease; or a
cardiovascular condition associated with interventional procedures
("procedural vascular trauma"), such as restenosis following
angioplasty, placement of a shunt, stent, synthetic or natural
excision grafts, indwelling catheter, valve or other implantable
devices. Preferred cardiovascular disorders include
atherosclerosis, myocardial infarction, aneurism, and stroke.
[0296] Other disorders that can be treated or prevented include,
for example, retinal ischemia, pulmonary hypertension, intrauterine
growth retardation, diabetic retinopathy, age-related macular
degeneration, and diabetic macular edema. Yet another embodiment of
this aspect of the present invention relates to a method of
reducing or preventing angiogenesis in a tissue.
[0297] In another aspect, the compositions of the invention may be
used to reduce transcription of a gene in a cell, where
transcription of the gene is mediated by an interaction of
HIF1.alpha., such as interaction of HIF1.alpha. with CBP and/or
p300. Genes whose transcription is mediated by interaction of
HIF1.alpha. with CBP and/or p300 include adenylate kinase 3,
aldolase A, aldolase C, enolase 1, glucose transporter 1, glucose
transporter 3, glyceraldehyde-3-phosphate dehydrogenase, hexokinase
1, hexokinase 2, insulin-like growth factor 2, IGF binding protein
1, IGF binding protein 3, lactate dehydrogenase A, phosphoglycerate
kinase 1, pyruvate kinase M, p21, transforming growth factor
.beta.3, ceruloplasmin, erythropoietin, transferrin, tranferrin
receptor, alB-adrenergic receptor, adrenomedullin, endothelin-1,
heme oxygenase 1, nitric oxide synthase 2, plasminogen activator
inhibitor 1, vascular endothelial growth factor, vascular
endothelial growth factor receptor FLT-1, vascular endothelial
growth factor receptor KDR/Flk-1, and p35srg.
[0298] A second aspect of the present invention relates to
inhibiting the HIF1.alpha.-p300/CBP interaction using the peptides
of the present invention. One embodiment of this aspect of the
present invention relates to a method of reducing transcription of
a gene in a cell, where transcription of the gene is mediated by
interaction of HIF1.alpha. with CREB-binding protein and/or p300.
This method involves contacting the cell with a peptide of the
present invention under conditions effective to cause nuclear
uptake of the peptide, where the peptide disrupts interaction of
HIF1.alpha. and p300/CBP and thereby reduces transcription of the
gene. Genes whose transcription is mediated by interaction of
HIF1.alpha. with CBP and/or p300 include adenylate kinase 3,
aldolase A, aldolase C, enolase 1, glucose transporter 1, glucose
transporter 3, glyceraldehyde-3-phosphate dehydrogenase, hexokinase
1, hexokinase 2, insulin-like growth factor 2, IGF binding protein
1, IGF binding protein 3, lactate dehydrogenase A, phosphoglycerate
kinase 1, pyruvate kinase M, p21, transforming growth factor
.beta..sub.3, ceruloplasmin, erythropoietin, transferrin,
tranferrin receptor, alB-adrenergic receptor, adrenomedullin,
endothelin-1, heme oxygenase 1, nitric oxide synthase 2,
plasminogen activator inhibitor 1, vascular endothelial growth
factor, vascular endothelial growth factor receptor FLT-1, vascular
endothelial growth factor receptor KDR/Flk-1, and p35.sup.srg. Some
uses for inhibiting transcription of these genes are shown in Table
4.
TABLE-US-00008 TABLE 4 Example disorders. Gene Disease to
treat/prevent Enolase 1 Hashimoto's encelopathy, severe asthma
Glucose transporter 1 Aerobic glycolysis (Warburg effect) Glucose
transporter 3 Aerobic glycolysis (Warburg effect) Hexokinase 1
Aerobic glycolysis (Warburg effect) Hexokinase 2 Aerobic glycolysis
(Warburg effect) Insulin-like growth factor 2 Abnormal development
and function of organs (brain, liver) IGF binding protein 1
Abnormal development and function of organs (brain, liver) IGF
binding protein 3 Abnormal development and function of organs
(brain, liver) Lactate dehydrogenase A Myocardial infarction
Ceruloplasmin Lymphoma, acute and chronic inflammation, rheumatoid
arthritis Erythropoietin Abnormal oxygen transport Transferrin
Abnormal iron uptake/metabolism Transferrin receptor Abnormal iron
uptake/metabolism Adrenomedullin Pheochromocytoma Endothelin-1
Abnormal vasoconstriction Heme oxygenase 1 Abnormal oxygen
transport Nitric oxide synthase 2 Abnormal vasomotor tone Vascular
endothelial growth Angiogenesis (tumors, including cancer) factor
Vascular endothelial growth Angiogenesis (tumors, including cancer)
factor receptor FLT-1 Vascular endothelial growth Angiogenesis
(tumors, including cancer) factor receptor KDR/Flk-1
[0299] Another embodiment of this aspect of the present invention
relates to a method of treating or preventing in a subject in need
thereof a disorder mediated by interaction of HIF1.alpha. with CBP
and/or p300. This method involves administering a peptide of the
present invention to the subject under conditions effective to
treat or prevent the disorder.
[0300] Disorders that can be treated or prevented include, for
example, retinal ischemia (Zhu et al., "Long-term Tolerance to
Retinal Ischemia by Repetitive Hypoxic Preconditioning: Role of
HIF-1.alpha. and Heme Oxygenase-1," Invest. Ophthalmol. Vis. Sci.
48: 1735-43 (2007); Ding et al., "Retinal Disease in Mice. Lacking
Hypoxia-inducible Transcription Factor-2a," Invest. Ophthalmol.
Vis. Sci. 46:1010-6 (2005), each of which is hereby incorporated by
reference in its entirety), pulmonary hypertension (Simon et al.,
"Hypoxia-induced Signaling in the Cardiovascular System," Annu.
Rev. Physiol. 70:51-71 (2008); Eul et al., "Impact of HIF-1.alpha.
and HIF-2.alpha. on Proliferation and Migration of Human Pulmonary
Artery Fibroblasts in Hypoxia," FASEB J. 20:163-5 (2006), each of
which is hereby incorporated by reference in its entirety),
intrauterine growth retardation (Caramelo et al., "Respuesta a la
Hipoxia. Un Mecanismo Sistemico Basado en el Control de la
Expresion Genica [Response to Hypoxia A Systemic Mechanism Based on
the Control of Gene Expression]," Medicina B. Aires 66:
155-{54(2006); Tazuke et al., "Hypoxia Stimulates Insulin-like
Growth Factor Binding Protein I (IGFBP-1) Gene Expression in HepG2
Cells: A Possible Model for IGFBP-1 Expression in Fetal Hypoxia,"
Proc. Nat'l Acad Sci. USA 95:10188-93 (1998), each of which is
hereby incorporated by reference in its entirety), diabetic
retinopathy (Ritter et al., "Myeloid Progenitors Differentiate into
Microglia and Promote Vascular Repair in a Model of Ischemic
Retinopathy," J. Clin Invest. 116:3266-76 (2006); Wilkinson-Berka
et al., "The Role of Growth Hormone, Insulin-like Growth Factor and
Somatostatin in Diabetic Retinopathy," Curr. Med Chem. 13:3307-17
(2006); Vinores et al., "Implication of the Hypoxia Response
Element of the Vegf Promoter in Mouse Models of Retinal and
Choroidal Neovascularization, but Not Retinal Vascular
Development," J. Cell. Physiol. 206:749-58 (2006); Caldwell et al.,
"Vascular Endothelial Growth Factor and Diabetic Retinopathy: Role
of Oxidative Stress," Curr. Drug Targets 6:511-24 (2005), each of
which is hereby incorporated by reference in its entirety),
age-related macular degeneration (Inoue et al., "Expression of
Hypoxia-inducible Factor 1a and 2a in Choroidal Neovascular
Membranes Associated with Age-related Macular Degeneration," Br. J
Ophthalmol. 91:1720-1 (2007); Zuluaga et al., "Synergies of VEGF
Inhibition and Photodynamic Therapy in the Treatment of Age-related
Macular Degeneration," Invest. Ophthalmol. Vis. Sci 48:1767-72
(2007); Provis, "Development of the Primate Retinal Vasculature,"
Prog. Retin Eye Res. 20:799-821 (2001), each of which is hereby
incorporated by reference in its entirety), diabetic macular edema
(Vinores et al., "Implication of the Hypoxia Response Element of
the Vegf Promoter in Mouse Models of Retinal and Choroidal
Neovascularization, but Not Retinal Vascular Development," J Cell.
Physiol. 206:749-58(2006); Forooghian & Das, "Anti-angiogenic
Effects of Ribonucleic Acid Interference Targeting Vascular
Endothelial Growth Factor and Hypoxia-inducible Factor-1.alpha.,"
Am. J Ophthalmol. 144:761-8 (2007), each of which is hereby
incorporated by reference in its entirety), and cancer (Marignol et
aL, "Hypoxia in Prostate Cancer: A Powerful Shield Against Tumour
Destruction?" Cancer Treat. Rev. 34:313-27 (2008); Galanis et al,
"Reactive Oxygen Species and HIF-Signalling in Cancer," Cancer
Lett. 266: 12-20 (2008); Ushio-Fukai & Nakamura, "Reactive
Oxygen Species and Angiogenesis: NADPH Oxidase as Target for Cancer
Therapy," Cancer Lett. 266:37-52 (2008); Adaski et al, "The
Cellular Adaptations to Hypoxia as Novel Therapeutic Targets in
Childhood Cancer," Cancer Treat. Rev. 34:231-46 (2008); Toffoli
& Michiels, "Intermittent Hypoxia Is a Key Regulator of Cancer
Cell and Endothelial Cell Interplay in Tumours," FEBS J.
275:2991-3002 (2008), each of which is hereby incorporated by
reference in its entirety).
[0301] Yet another embodiment of this aspect of the present
invention relates to a method of reducing or preventing
angiogenesis in a tissue. This method involves contacting the
tissue with a peptide of the present invention under conditions
effective to reduce or prevent angiogenesis in the tissue. Another
embodiment of this aspect of the present invention relates to a
method of inducing apoptosis of a cell. This method involves
contacting the cell with a peptide of the present invention under
conditions effective to induce apoptosis of the cell. Another
embodiment of this aspect of the present invention relates to a
method of decreasing survival and/or proliferation of a cell. This
method involves contacting the cell with a peptide of the present
invention under conditions effective to decrease survival and/or
proliferation of the cell. Contacting (including administering)
according to this aspect of the present invention can be carried
out using methods that will be apparent to the skilled artisan and
as described above, and can be done in vitro or in vivo.
[0302] Some example target cells, tissues and/or organs for the
embodiments described above are shown in Table 5.
TABLE-US-00009 TABLE 5 Example Targets. Desired effect Example
Target(s) Inhibit transcription of: Enolase 1 Liver, brain, kidney,
spleen, adipose, lung Glucose transporter 1 Tumor, incl. cancer
Glucose transporter 3 Tumor, incl. cancer Hexokinase 1 Tumor, incl.
cancer Hexokinase 2 Tumor, incl. cancer Insulin-like growth factor
2 Brain, liver IGF binding protein 1 Brain, liver IGF binding
protein 3 Brain, liver Lactate dehydrogenase A Heart Ceruloplasmin
Lymphocytes/lymphatic tissue, inflamed tissue, rheumatoid arthritic
tissue Erythropoietin Liver, kidney Transferrin Liver
Adrenomedullin Pheochromocytoma Endothelin-1 Endothelium Nitric
oxide synthase 2 Vessels, cariovascular cells/tissue Vascular
endothelial growth factor Tumor cells/tissue, incl. cancer Vascular
endothelial growth factor Tumor cells/tissue, incl. cancer receptor
FLT-1 Vascular endothelial growth factor Tumor cells/tissue, incl.
cancer receptor KDR/Flk-1 Treat or prevent: Retinal ischemia Retina
(eye) Pulmonary hypertension Lungs Intrauterine growth retardation
Uterus Diabetic retinopathy Retina (eye) Age-related macular
degeneration Retina (eye) Diabetic macular edema Retina (eye)
Angiogenesis Tumor cells/tissue, incl. cancer Decrease cell
survival and/or Cancerous cells, cells contained proliferation in
the endothelial vasculature of a tissue that contains cancerous
cells
[0303] Another aspect of the present invention relates to a method
of identifying an agent that potentially inhibits interaction of
HIF1.alpha. with CBP and/or p300. This method involves providing a
peptide of the present invention, contacting the peptide with a
test agent, and determining whether the test agent selectively
binds to the peptide, wherein a test agent that selectively binds
to the peptide is identified as a potential inhibitor of
interaction between HIF1.alpha. with CBP and/or p300.
[0304] This aspect of the present invention can be carried out in a
variety of ways, which will be apparent to the skilled artisan. For
example, the affinity of the test agent for the peptide of the
present invention may be measured using isothermal titration
calorimetry analysis, as described in Example 4 (Wiseman et al.,
"Rapid Measurement of Binding Constants and Heats of Binding Using
a New Titration Calorimeter," Anal. Biochem. 179: 131-7 (1989);
Freire et al., "Isothermal Titration Calorimetry," Anal. Chem.
62:A950-A959 (1990); Chervenak & Toone, "Calorimetric Analysis
of the Binding of Lectins with Overlapping Carbohydrate-binding
Ligand Specificities," Biochemistry 34:5685-95 (1995); Aki et al.,
"Competitive Binding of Drugs to the Multiple Binding Sites on
Human Serum Albumin. A Calorimetric Study," J Thermal Anal.
Calorim. 57:361-70 (1999); Graziano et al., "Linkage of Proton
Binding to the Thermal Unfolding of Sso7d from the
Hyperthermophilic Archaebacterium Sulfolobus solfataricus," Int'l J
Biol. Macromolecules 26:45-53 (1999): Pluschke & Mutz, "Use of
Isothennal Titration Calorimetry in the Development of Molecularly
Defined Vaccines," J. Thermal Anal. Calorim. 57:377-88 (1999);
Corbell et al., "A Comparison of Biological and Calorimetric
Analyses of Multivalent Glycodendrimer Ligands for Concanavalin A,"
Tetrahedron-Asymmetry 11:95-111 (2000), which are hereby
incorporated by reference in their entirety). In one embodiment, a
test agent is identified as a potential inhibitor of interaction
between HIF1.alpha. with CBP and/or p300 if the dissociation
constant (Kd) for the test agent and the peptide of the invention
is 50 .mu.M or less. In another embodiment, the Kd is 200 nM or
less. In yet another embodiment, the Kd is 100 nM or less.
[0305] Test agents identified as potential inhibitors of
HIF1.alpha.-p300/CREB interaction may be subjected to further
testing to confirm their ability to inhibit interaction between
HIF1.alpha. with CBP and/or p300.
[0306] As used herein, the term "treatment" is defined as the
application or administration of a therapeutic agent to a patient,
or application or administration of a therapeutic agent to an
isolated tissue or cell line from a patient, who has a disease, a
symptom of disease or a predisposition toward a disease, with the
purpose to cure, heal, alleviate, relieve, alter, remedy,
ameliorate, improve or affect the disease, the symptoms of disease
or the predisposition toward disease.
EXAMPLES
Example 1: Peptidomimetic Macrocycles of the Invention
[0307] Peptidomimetic macrocycles were synthesized, purified and
analyzed as previously described and as described below
(Schafmeister et al., J. Am. Chem. Soc. 122:5891-5892 (2000);
Schafeister & Verdine, J. Am. Chem. Soc. 122:5891 (2005);
Walensky et al., Science 305:1466-1470 (2004); and U.S. Pat. No.
7,192,713). Peptidomimetic macrocycles were designed by replacing
two or more naturally occurring amino acids with the corresponding
synthetic amino acids. Substitutions were made at i and i+4, and i
and i+7 positions. Peptide synthesis was performed either manually
or on an automated peptide synthesizer (Applied Biosystems, model
433A), using solid phase conditions, rink amide AM resin
(Novabiochem), and Fmoc main-chain protecting group chemistry. For
the coupling of natural Fmoc-protected amino acids (Novabiochem),
10 equivalents of amino acid and a 1:1:2 molar ratio of coupling
reagents HBTU/HOBt (Novabiochem)/DIEA were employed. Non-natural
amino acids (4 equiv) were coupled with a 1:1:2 molar ratio of HATU
(Applied Biosystems)/HOBt/DIEA. The N-termini of the synthetic
peptides were acetylated, while the C-termini were amidated.
[0308] Purification of cross-linked compounds was achieved by high
performance liquid chromatography (HPLC) (Varian ProStar) on a
reverse phase C18 column (Varian) to yield the pure compounds.
Chemical composition of the pure products was confirmed by LC/MS
mass spectrometry (Micromass LCT interfaced with Agilent 1100 HPLC
system) and amino acid analysis (Applied Biosystems, model
420A).
[0309] Exemplary structures of several peptidomimetic macrocycles
are shown.
SP-5 (X.dbd.S) (SEQ ID NO: 21) and SP-6 (X.dbd.CH.sub.2) (SEQ ID
NO: 22)
##STR00129##
[0310] SP-215 (SEQ ID NO: 231)
##STR00130##
[0311] Example 2: HIF1.alpha. p300 Displacement Assays
[0312] The ability of peptides to displace HIF1.alpha. c-terminal
trans-activation domain from p300-CH was measured by a TR FRET
assay. A complex of flag-tagged HIF1.alpha. (AA 786-826) and
His6-tagged p300 (AA 323-423) was co-expressed using pETDuet vector
(EMDMillipore, Bellrica Mass.) and purified from E. coli in the
presence of 0.1 mM ZnSO.sub.4. The complex was diluted to 300 nM
final in complete assay media and competitor peptides were added.
The complete assay media contained 150 mM NaCl (Sigma +S5150 or
equivalent), 20 mM HEPES pH 7.4 (Boston Bioproducts, Ashland,
Mass.; #BB-2076), 7.5 mM CHAPS (Thermo #28300 or equivalent), and 1
mM DTT. Protein and peptide were incubated at room temperature for
1 hour before the addition of anti-Flag-K and anti-6.times.HIS-D2
(CisBio, Bedford Mass.) HTRF reconstitution buffer (50 mM Phosphate
pH 7, 0.8 Potassium Flouride, BSA 0.2%).sup.1 to a final
concentration of 0.5 .mu.M and 4 nM respectively. The reaction
continued for an additional two hours at room temperature. The
reaction was read on a TECAN F500 plate reader with settings
recommended by CisBio. The ratio of donor to acceptor fluorescence
was calculated. The resulting data was analyzed with Graphpad Prism
5.0. IC50 values were calculated for both proteins using the One
Site Fit-LogIC50 equation and presented in the column "IC.sub.50
(nM) (HIF1.alpha._p300 Displacement+CHAPS)" of Table 6. .sup.1
Cisbio USA, Bedford, Mass.; 61HISDLB (lot 007A), 61FG2KLB (024A),
HTRF Buffer (62RB3RDF)
Example 3: Reporter Gene Assay
[0313] The following reagents were used:
TABLE-US-00010 Growth Assay Media Medium Medium DMEM + GlutaMAX
1000 ml -- Opti-MEM -- 500 ml Dialyzed FBS 110 ml 5 ml NEAA (100X)
11 ml 5 ml Sodium Pyruvate (100X) 11 ml 5 ml HEPES (1M) 11 ml 5 ml
Pen/Strep 11 ml 5 ml Blasticidin 550 ml --
[0314] DMEM+GutaMAX: (#10569044, Invitrogen) [0315] Black clear
bottom plates: (#3603, Costar) [0316] HRE-bla-ME-180 cell line:
(#K1644, Invitrogen) [0317] Gene-Blazer reagent & protocol:
(#K1096, Invitrogen) [0318] Plate reader: Biotek Synergy 2 [0319]
Chetomin: (C9623, Sigma)
At Day 0:
[0320] 4 hours prior to experiment: HRE-bla ME-180 cells were
seeded at a density of 20,000 cells/well in a volume of 180 .mu.l
in black clear bottom 96-well plates. 180 .mu.l of assay medium was
added to the cell-free control wells. Incubation was conducted at
37.degree. C., 5% CO.sub.2 for 4 hours.
[0321] Diluted chetomin was used as a positive control. Chetomin
was diluted in 100% DMSO to a 10 mM stock concentration. A 1 mM
stock of chetomin was prepared in 100% DMSO. Then the 1 mM chetomin
stock was serially diluted in 1:4 in 100% DMSO. Finally, 50, 12.5,
3.125, 0.78, 0.2, 0.05 .mu.M stock of chetomin in 5% DMSO/water
were prepared by adding 114 .mu.L water+6 .mu.L chetomin in
DMSO.
[0322] Test peptides were diluted before use. The test peptides
were diluted in 100% DMSO to a 10 mM stock concentration. Then each
10 mM peptide stock was diluted in 1:3 in 100% DMSO. Finally, 300,
100, 33.3, 11.1, 3.7, 1.2 .mu.M stock of each peptide in 5%
DMSO/water were prepared by adding 129.2 .mu.L water+4 .mu.L
peptide in DMSO.
[0323] 20 .mu.l of peptide, chetomin dilution, or DMSO/water
control were added to the appropriate wells of a plate to achieve
200 .mu.L final volumes in 0.3% DMSO/media. The plate was first
incubated for 18-20 hours in normoxia incubator (37.degree. C. in
humidified 5% CO.sub.2, 20% O.sub.2 atmosphere). Then the plate was
transferred to hypoxia incubator for 24 hours (37.degree. C. in
humidified 5% CO.sub.2, 1% O.sub.2 atmosphere)
Day +1: (all Work in the Absence of Strong Light)
[0324] 6.times. LiveBLAzer.TM.-FRET B/G (CCF4-AM) Substrate Mixture
was prepared according to CellSensor.TM. HRE-bla ME-180 Cell-based
Assay Protocol (Invitrogen) and added into each well. Solution A
(CCF4-AM) was reconstituted in DMSO to a working concentration of 1
mM, divided in aliquots, and stored at -20.degree. C. The 6.times.
LiveBLAzer-FRET B/G (CCF4-AM) Substrate mixture was prepared by
mixing 6 .mu.l of Solution A, 60 .mu.l of Solution B, and 934 .mu.l
Solution C.
[0325] The plates were removed from incubator and equilibrated to
RT for a few minutes. Then 20 .mu.l of 6.times. Substrate mixture
was added to each well. The plates were then incubated at room
temperature for 3 hr in the dark and read at 409 Ex/460Em and
409Ex/530Em using the "GeneBlazer-Tungsten with export" program on
the Synergy 2.
Results:
[0326] The average percentage of maximum inhibition was obtained by
comparing the peptide treated cells (30 .mu.M) to DMSO vehicle
control treated cells. The results are shown in the columns "ME-180
HIF Reporter EC.sub.50 (.mu.M) -24 hr normoxia" and "18 h Avg % max
inhibition at top conc (HIF Rptr-24 hrsnormoxia) (.mu.M)" of Table
6.
[0327] SP-6 effectively inhibited several known HIF1.alpha.
targets, including ANGPTL4, CA9 and ALDOC which regulate
angiogenesis and tumor metabolism in ME-180 cervical cancer cells,
as shown in FIG. 1.
Cell Proliferation Assay
[0328] The human cervical cell line HRE-Bla ME-180 was obtained
from Invitrogen. 2.times.10.sup.4 ME-180 cells were plated in
96-well plates (costar) in Opti-MEM plus 1% FBS (Invitrogen). After
4 hr, cells were pretreated with chetomin, peptide or 0.5% DMSO
(final concentration in media) vehicle control for 16 hr under
normoxia (21% O.sub.2); then incubation continued under normoxia or
hypoxia (1% O.sub.2) using a hypoxia incubator (Thermo Forma
model). Viable cell numbers were quantified using CellTiter 96
Non-Radioactive Cell Proliferation kit (Promega, G4100). The
results are presented in the column "Viability 1% FBS AVG (MTT
V3-24 hr Normoxia) (.mu.M)" of Table 6.
Example 4: qRT-PCR
[0329] The human cervical cell line HRE-Bla ME-180 was obtained
from Invitrogen. 1.2.times.10.sup.5 ME-180 cells were plated in
24-well plates (costar) in Opti-MEM plus 1% FBS (Invitrogen). 4 hrs
later, cells were pretreated with chetomin, peptide or 0.5% DMSO
(final concentration in media) vehicle control for 16 hrs under
normoxia (21% O.sub.2); then incubation continued under normoxia or
hypoxia (1% O.sub.2) for 12 hrs using a hypoxia incubator (Thermo
Forma model). Total RNA was isolated with an Rneasy Plus mini Kit
(Qiagen) and cDNA was synthesized with cDNA synthesis Kit and then
amplified with angiopoietin-like 4 (Angpt14, Hs01101127_m1,
Invitrogen); CA9 (Hs00154208_m1, Invitrogen); aldolase C (ALDOC,
Hs00193059_m1, Invitrogen); SLC2A1 (Glut1, Hs00892681_m1,
Invitrogen); EP300 (p300, Hs00914223_m1, Invitrogen); ARNT (HIF1b,
Hs00231048_m1, Invitrogen).
Example 5: Western Blot Analysis
[0330] The human cervical cell line HRE-Bla ME-180 was obtained
from Invitrogen. 6.2.times.10.sup.5 cells were plated in 6-well
plates (costar) in Opti-MEM plus 1% FBS (Invitrogen). 4 hrs later,
cells were pretreated with chetomin, peptide or 0.5% DMSO (final
concentration in media) vehicle control for 16 hrs under normoxia
(21% O.sub.2); then incubation continued under normoxia or hypoxia
(1% O.sub.2) for 24 hrs using a hypoxia incubator (Thermo Forma
model). Total cell lysate form control, chetomin treated or SP-6
treated ME-180 cells were separated by SDS-PAGE and probed with
anti-CA9 (1:2000, NB100-417, Novus biologicals) and anti HSC70
(1:5000, ab19136, Abcam). The results demonstrate that the protein
level of Carbonic anhydrase 9 (CA9) was down-regulated by treating
with SP-6 in ME-180 cells, as shown in FIG. 2.
Example 6: Kinetic Studies of Binding to p300 CH1 Domain
[0331] Biolayer inferometry (ForteBio, Menlo Park Calif.) was used
to measure competition of SP-6 for HIF1.alpha. (AAs 788-826).
Biotinylated HIF1.alpha. peptide was captured on Ni-NTA biosensor
tip. The association of 300 nM GST-tagged p300 CH1 domain (AAs
302-423) in the presence or absence of varying concentrations of
SP-6 was measured for 240 s. Dissociation was monitored for a
minimum of 200 s in the absence of free p300 or stapled peptide.
Binding of p300 to biosensor immobilized HIF1.alpha. target was
analyzed with instrument software and total response (R) was
proportional to binding.
[0332] The results are shown in FIG. 3. Inhibition of p300 binding
was calculated as % inhibition=1-(R(no inhibitor)-R(with
inhibitor)).times.100%. A concentration of 10 .mu.M SP-6 blocked
99% of the total binding. The inhibition was dose-dependent, with 2
.mu.M inhibiting 50% of p300/HIF1.alpha. binding.
Example 7: PC-3 Prostate Xenograft Model
[0333] A xenograft study was performed to test the efficacy of SP-6
in inhibiting tumor growth in athymic mice in the PC-3 human
prostate carcinoma xenograft model. PC-3 tumor fragments were
implanted subcutaneously (sc) in the flank of athymic nude mice.
Once the implanted tumor fragments had grown sufficiently (Day 1),
sc tumors were measured using calipers to determine their length
and width and the mice were weighed. The tumor sizes were
calculated using the formula (length.times.width.sup.2)/2 and
expressed as cubic millimeters (mm.sup.3). Mice with tumors smaller
than 108 mm.sup.3 or larger than 162 mm.sup.3 were excluded from
subsequent group formation. Groups of mice, 10 mice per group, were
formed by randomization such that the group mean tumor sizes were
essentially equivalent (mean of groups.+-.standard error of the
means of groups=128.4.+-.0.6 mm.sup.3).
[0334] Each group received treatment intravenously (IV) on an every
other day basis starting on Day 1 for a total of 12 injections
(Days 1-24); volume of dosing solution to be administered was based
on the weight of the mouse taken on each dosing day. The negative
control vehicle group received vehicle administered at 10 mL/kg
body weight. Two groups were administered SP-6 at either 50 or 25
mg/kg per dosing day in a single IV injection on that day of 10
mL/kg of a dosing solution of SP-6 of 5 or 2.5 mg/mL,
respectively.
[0335] During the treatment and tumor measurement period (Days
1-24) the mice were weighed and tumors measured two to three times
per week. Treatment with SP-6 was well-tolerated as evidenced by no
significant decrease in body weight in the SP-6 treated groups
compared with the negative control vehicle group. Results in terms
of tumor volume are shown in FIG. 3. The vehicle negative control
group showed the expected tumor growth rate for this tumor model.
Tumor growth inhibition (TGI) was calculated as %
TGI=100-[(TuVol.sup.Teated-Day X-TuVol.sup.Treated-Day
1)/(TuVol.sup.Vehicle negative control-Day X-TuVol.sup.Vehicle
negative control-Day 1)*100], where X=day that effect of treatment
is being assessed. On the final day of measurement (Day 24),
treatment with SP-6 at 50 or 25 mg/kg produced TGI of 64 and 39%,
respectively.
Results:
[0336] SP-6 effectively inhibited tumor growth, as shown in FIG.
4.
TABLE-US-00011 TABLE 6 .gtoreq.50: ++++ .gtoreq.30: ++++ >700: +
>30: + .ltoreq.25 but <50: +++ .ltoreq.15 but <30: +++
<400 but .ltoreq.700: ++ <15 but .ltoreq.30: ++ .ltoreq.10
but <25: ++ .ltoreq.5 but <15: ++ <200 but .ltoreq.400:
+++ <5 but .ltoreq.15: +++ <10: + <5: + .ltoreq.200: ++++
.ltoreq.5: ++++ 18 h Avg % max Viability 1% IC50 (nM) ME-180 HIF
inhibition at top FBS AVG (HIF1.alpha._p300 Reporter EC50 conc (HIF
Rptr- (MTT V3-24 Scale Displacement + (.mu.M)-24 hour 24 hrs
normoxia) hr Normoxia) SP # CHAPS) normoxia (.mu.M) (.mu.M) SP-1
+++ SP-2 ++ SP-3 +++ + +++ SP-4 +++ SP-5 ++ +++ ++++ ++++ SP-6 ++++
+++ ++++ ++++ SP-7 ++ ++++ SP-8 +++ ++++ SP-9 + ++ +++ SP-10 +
SP-11 + +++ ++++ SP-12 + +++ ++++ SP-13 +++ +++ ++++ SP-14 + +++
++++ SP-15 + ++++ ++++ SP-16 + ++++ ++++ SP-17 +++ +++ ++++ SP-18
++ +++ ++++ SP-19 +++ +++ +++ SP-20 + +++ ++++ SP-21 ++ +++ ++++
SP-22 ++ +++ ++++ SP-23 + +++ ++++ SP-24 ++ +++ ++++ SP-25 ++ +++
+++ SP-26 + +++ ++++ SP-27 ++ +++ ++++ SP-28 + ++ ++++ SP-29 + + ++
SP-30 + + ++ SP-31 + + + SP-32 + ++ +++ SP-33 + + +++ SP-34 + +++
++++ SP-35 + + + SP-36 + + + SP-37 + + + SP-38 + ++ ++++ SP-39 + ++
+++ SP-40 +++ + + SP-41 +++ ++ ++++ SP-42 + + ++ SP-43 ++ + +++
SP-44 + ++ +++ SP-45 + + ++ SP-46 ++ ++ +++ SP-47 +++ +++ ++++
SP-48 + ++ +++ SP-49 + +++ ++++ SP-50 + ++++ ++++ SP-51 ++ +++ +++
SP-52 + ++ ++++ SP-53 ++ +++ +++ SP-54 ++ ++++ ++++ SP-55 +++ +++
++++ SP-56 ++ SP-57 ++ +++ ++++ SP-58 + + +++ SP-59 ++ ++ +++ SP-60
+ + + SP-61 ++ + + SP-62 + + ++ SP-63 + +++ +++ SP-64 + + + SP-65 +
+ + SP-66 ++ + ++ SP-67 ++ SP-68 + SP-69 + +++ ++++ SP-70 + +++ +++
SP-71 + SP-72 ++ SP-73 ++ SP-74 ++ SP-75 SP-76 + + + SP-77 + SP-78
+ SP-79 + SP-80 SP-81 + SP-82 +++ + + SP-83 SP-84 ++++ + + SP-85
SP-86 ++++ +++ ++++ SP-87 ++ ++++ SP-88 SP-89 ++++ +++ +++ SP-90 +
SP-91 SP-92 SP-93 + SP-94 SP-95 SP-96 SP-97 + SP-98 + SP-99 +
SP-100 + SP-101 + SP-102 + SP-103 + SP-104 +++ +++ ++++ ++++ SP-105
++++ + SP-106 +++ + SP-107 ++++ + SP-108 ++++ + ++ ++++ SP-109 +++
+ + ++ SP-110 ++ + +++ ++++ SP-111 +++ + ++++ ++++ SP-112 ++++ +++
+++ ++++ SP-113 ++ +++ ++++ ++++ SP-114 ++++ +++ ++++ SP-115 +
SP-116 + + +++ ++++ SP-117 + + +++ ++++ SP-118 ++++ ++ +++ ++++
SP-119 ++++ + +++ ++++ SP-120 ++++ + + SP-121 ++ + SP-122 +++ + ++
SP-123 + + ++++ SP-124 + SP-125 +++ + + SP-126 +++ ++ ++++ SP-127 +
+ ++++ SP-128 + +++ ++++ SP-129 + + ++ ++++ SP-130 ++ + +++ ++++
SP-131 +++ ++ ++++ ++++ SP-132 + SP-133 + SP-134 +++ + +++ ++++
SP-135 + SP-136 + SP-137 + SP-138 +++ + +++ ++++ SP-139 ++ + +++ ++
SP-140 ++ + +++ +++ SP-141 ++ ++ ++++ ++ SP-142 ++ + +++ ++++
SP-143 ++ +++ ++++ ++ SP-144 ++ + ++++ +++ SP-145 +++ ++++ SP-146 +
+ +++ ++++ SP-147 + ++ +++ ++++ SP-148 + + +++ ++++ SP-149 ++ +++
++++ + SP-150 +++ SP-151 ++ ++++ ++++ SP-152 ++ + +++ ++++ SP-153
++ + + ++++ SP-154 +++ + + ++++ SP-155 + + ++ ++++ SP-156 +++ + ++
++++ SP-157 + + + SP-158 SP-159 SP-160 SP-161 SP-162 ++ ++++ SP-163
SP-164 SP-165 SP-166 SP-167 SP-168 SP-169 SP-170 SP-171 SP-172
SP-173 SP-174 + +++ ++++ SP-175 ++ + ++ ++++ SP-176 + + ++++ ++++
SP-177 ++ +++ ++++ +++ SP-178 + SP-179 + SP-180 + SP-181 + SP-182 +
SP-183 SP-184 + SP-185 + SP-186 + SP-187 + SP-188 + SP-189 + SP-190
+ ++ ++++ SP-191 +++ + ++ ++++ SP-192 +++ + ++ ++++ SP-193 ++ + +
SP-194 SP-195 ++ ++++ ++++ ++ SP-196 +++ ++++ ++++ ++++ SP-197 +
+++ ++++ ++++ SP-198 + SP-199 +++ + + ++++ SP-200 ++++ + ++++ ++++
SP-201 + +++ ++++ SP-202 + + ++++ SP-203 ++++ ++++ ++++ SP-204 +
SP-205 +++ + + ++++ SP-206 + + + SP-207 ++++ + + ++++ SP-208 + +++
+++ ++ SP-209 + + ++ SP-210 +++ +++ ++++ + SP-211 +++ + + ++++
SP-212 +++ +++ ++++ ++ SP-213 + + + ++++ SP-214 + + +++ SP-215
SP-216 SP-217 + + +++ ++++ SP-218 + + ++++ SP-219 ++ + ++ SP-220 +
+ + ++++ SP-221 +++ ++ ++++ ++++ SP-222 +++ SP-223 + SP-224 ++ + ++
++++ SP-225 + + +++ ++++ SP-226 ++ + ++ ++++ SP-227 + + ++ ++++
SP-228 +++ + +++ ++++ SP-229 ++ + + ++++ SP-230 ++ + + ++++ SP-231
+ + + SP-232 ++ + ++ SP-233 ++ ++ +++ SP-234 ++ + +++ ++++ SP-235 +
++ +++ ++++
SP-236 + + +++ ++++ SP-237 + + +++ SP-238 ++ + ++ SP-239 ++ + ++
++++ SP-240 ++ + +++ ++++ SP-241 ++ SP-242 ++++ SP-243 ++ ++ ++++
++++ SP-244 + ++++ ++++ ++++ SP-245 ++++ SP-246 + + + ++++ SP-247
++ ++ +++ ++++ SP-248 + + +++ ++++ SP-249 + + + ++++ SP-250 + + +
++++ SP-251 + ++++ ++++ + SP-252 + ++++ ++++ ++ SP-253 SP-254 +
++++ +++ + SP-255 + ++++ ++++ + SP-256 + ++++ ++++ ++ SP-257 + +++
++++ ++ SP-258 + +++ +++ ++ SP-259 + ++++ ++++ + SP-260 + ++++ ++++
+ SP-261 ++++ SP-262 + ++ ++++ SP-263 ++ +++ ++++ ++++ SP-264 ++ ++
++ ++++ SP-265 +++ +++ ++++ ++++ SP-266 +++ ++++ SP-267 ++ + +++
++++ SP-268 + + +++ ++++ SP-269 ++ ++ +++ ++++ SP-270 + + ++ ++++
SP-271 + + +++ ++++ SP-272 + ++++ ++++ ++ SP-273 + + +++ ++++
SP-274 +++ ++++ ++++ SP-275 +++ ++++ ++++ SP-276 + ++ ++++ SP-277
++++ ++++ ++++ SP-278 + ++ ++++ SP-279 ++++ ++++ ++++ SP-280 +++
++++ ++++ SP-281 ++ +++ ++++ ++++ SP-282 ++++ ++++ ++++ ++++ SP-283
+ + +++ ++++ SP-284 ++ +++ +++ ++++ SP-285 + + +++ ++++ SP-286 + +
++ ++++ SP-287 + +++ ++++ ++++ SP-288 + + + ++++ SP-289 SP-290 + +
SP-291 + +++ SP-292 + + SP-293 + + SP-294 SP-295 SP-296 ++++ ++++
SP-297 SP-298 +++ ++++ SP-299 ++++ ++++ SP-300 +++ ++++ SP-301 ++
+++ SP-302 + SP-303 + SP-304 + SP-305 ++++ + ++++ ++++ SP-306 ++++
+ +++ ++++ SP-307 + + +++ ++++ SP-308 +++ ++ ++++ ++++ SP-309 +++ +
+ ++++ SP-310 ++ + + ++++ SP-311 + + ++ ++++ SP-312 + ++++ ++++
++++ SP-313 +++ + + ++++ SP-314 + SP-315 + SP-316 + SP-317 + SP-318
++ + + ++++ SP-319 +++ + + ++++ SP-320 +++ + + ++++ SP-321 +++ ++
+++ ++++ SP-322 +++ + + ++++ SP-323 +++ + + ++++ SP-324 ++ SP-325 +
+ + ++++ SP-326 + ++++ SP-327 + + + ++++ SP-328 ++++ + + ++++
SP-329 + SP-330 + + + ++++ SP-331 + SP-332 ++++ + + ++++ SP-333 ++
SP-334 +++ + + ++++ SP-335 ++ + + ++++ SP-336 + + + ++++ SP-337 ++
+ + ++++ SP-338 + + +++ ++++ SP-339 +++ + + ++++ SP-340 + + ++ ++++
SP-341 +++ + + ++++ SP-342 + + +++ ++++ SP-343 +++ + + ++++ SP-344
++ + + ++++ SP-345 SP-346 ++++ + ++ ++++ SP-347 ++ + +++ ++++
SP-348 + SP-349 ++++ + +++ ++++ SP-350 ++++ +++ +++ ++++ SP-351 +++
+ ++ ++++ SP-352 ++++ + ++ ++++ SP-353 ++++ + +++ ++++ SP-354 +++ +
+++ ++++ SP-355 ++++ + ++ ++++ SP-356 + SP-357 ++++ + ++ ++++
SP-358 +++ + + ++++ SP-359 +++ + +++ ++++ SP-360 +++ + ++ ++++
SP-361 + + ++ ++++ SP-362 ++ +++ ++++ ++++ SP-363 + + ++ ++++
SP-364 + + ++ ++++ SP-365 + + +++ ++++ SP-366 + ++++ ++++ ++++
SP-367 ++ ++++ ++++ ++++ SP-368 SP-369 + ++ ++++ SP-370 + SP-371 +
++ ++++ SP-372 ++ + ++++ ++++ SP-373 +++ + +++ ++++
[0337] While preferred embodiments of the present invention have
been shown and described herein, it will be obvious to those
skilled in the art that such embodiments are provided by way of
example only. Numerous variations, changes, and substitutions will
now occur to those skilled in the art without departing from the
invention. It should be understood that various alternatives to the
embodiments of the invention described herein may be employed in
practicing the invention. It is intended that the following claims
define the scope of the invention and that methods and structures
within the scope of these claims and their equivalents be covered
thereby.
Sequence CWU 1
1
391116PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Any amino acid available
for cross-linkingmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Any amino acid available
for cross-linkingmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Any amino acid available for
cross-linkingMOD_RES(14)..(14)NleC-term NH2 1Phe Ile Asp Ile Xaa
Val Leu Leu Xaa Leu Val Ile Xaa Leu Ala Leu1 5 10
15232PRTArtificial SequenceDescription of Artificial Sequence
Synthetic polypeptideMOD_RES(1)..(2)Any hydrophobic amino acid or
absentMOD_RES(3)..(3)Any negatively charged amino acid, positively
charged amino acid or absentMOD_RES(4)..(4)Any uncharged polar
amino acid or absentMOD_RES(5)..(5)Any negatively charged amino
acid or absentMOD_RES(6)..(6)Any hydrophobic amino acid, negatively
charged amino acid, positively charged amino acid, uncharged polar
amino acid or absentMOD_RES(7)..(7)Any hydrophobic amino acid,
negatively charged amino acid or absentMOD_RES(8)..(8)Any
negatively charged amino acid, positively charged amino acid or
absentMOD_RES(9)..(9)Any negatively charged amino acid, absent or
any amino acid available for cross-linkingMOD_RES(10)..(10)Any
negatively charged amino acid, positively charged amino acid,
uncharged polar amino acid or any amino acid available for
cross-linkingMOD_RES(11)..(11)Any hydrophobic amino acid,
negatively charged amino acid, positively charged amino acid or any
amino acid available for cross-linkingMOD_RES(12)..(12)Any
hydrophobic amino acid, negatively charged amino acid or any amino
acid available for cross-linkingMOD_RES(13)..(13)Any hydrophobic
amino acid, hydrophobic amino acid, negatively charged amino acid
or any amino acid available for cross-linkingMOD_RES(14)..(14)Any
amino acid available for cross-linkingMOD_RES(15)..(16)Any
hydrophobic amino acid, negatively charged amino acid or any amino
acid available for cross-linkingMOD_RES(17)..(17)Any hydrophobic
amino acid, negatively charged amino acid, positively charged amino
acid or any amino acid available for
cross-linkingMOD_RES(18)..(18)Any amino acid available for
cross-linkingMOD_RES(19)..(19)Any hydrophobic amino acid,
negatively charged amino acid, positively charged amino acid or any
amino acid available for cross-linkingMOD_RES(20)..(20)Any
negatively charged amino acid, hydrophobic amino acid or any amino
acid available for cross-linkingMOD_RES(21)..(21)Any hydrophobic
amino acid or negatively charged amino acidMOD_RES(22)..(22)Any
negatively charged amino acid or absentMOD_RES(23)..(23)Any
positively charged amino acid, negatively charged amino acid or
absentMOD_RES(24)..(25)Any hydrophobic amino acid, negatively
charged amino acid or absentMOD_RES(26)..(26)Any negatively charged
amino acid or absentMOD_RES(27)..(28)Any hydrophobic amino acid or
absentMOD_RES(29)..(29)Any negatively charged amino acid, uncharged
polar amino acid or absentMOD_RES(30)..(32)Any hydrophobic amino
acid or absentmisc_feature(1)..(32)This sequence contains at least
one macrocycle-forming linker which connects at least one pair of
amino acids at positions 1 to 28see specification as filed for
detailed description of substitutions and preferred embodiments
2Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa1 5
10 15Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa 20 25 30332PRTArtificial SequenceDescription of Artificial
Sequence Synthetic polypeptideMOD_RES(1)..(1)May or may not be
presentMOD_RES(2)..(2)Ile, Phe or absentMOD_RES(3)..(3)Asp, Arg or
absentMOD_RES(4)..(5)May or may not be presentMOD_RES(6)..(6)Phe,
Ala, Glu, Ser, Dpr, Asn or absentMOD_RES(7)..(7)Ile, Ala, Glu, Ser
or absentMOD_RES(8)..(8)Asp, Ala, Ser, Dpr or
absentMOD_RES(9)..(9)Glu, Ala, absent or any amino acid available
for cross-linkingMOD_RES(10)..(10)Glu, Ala, Ser, Dpr, Gln or any
amino acid available for cross-linkingMOD_RES(11)..(11)Val, Ala,
Asp, Ser, Dpr or any amino acid available for
cross-linkingMOD_RES(12)..(12)Leu, Ala, Glu, Ser, pL or any amino
acid available for cross-linkingMOD_RES(13)..(13)Met, Nle, Ala, Asp
or any amino acid available for cross-linkingMOD_RES(14)..(14)Ser
or any amino acid available for cross- linkingMOD_RES(15)..(15)Leu,
Ala, Asp, Ser or any amino acid available for
cross-linkingMOD_RES(16)..(16)Val, Ala, Glu, Ser, pL or any amino
acid available for cross-linkingMOD_RES(17)..(17)Ile, Ala, Glu,
Ser, Dpr, Bpa or any amino acid available for
cross-linkingMOD_RES(18)..(18)Glu or any amino acid available for
cross-linkingMOD_RES(19)..(19)Met, Nle, Ala, Glu, Ser, Dpr, Bpa or
any amino acid available for cross-linkingMOD_RES(20)..(20)Gly,
Ala, Glu, Ser or any amino acid available for
cross-linkingMOD_RES(21)..(21)Leu, Ala, Glu or
SerMOD_RES(22)..(22)Asp, Ala, Ser or absentMOD_RES(23)..(23)Arg,
Ala, Glu, Ser, Dpr or absentMOD_RES(24)..(24)Ile, Ala, Glu, Ser or
absentMOD_RES(25)..(25)Lys, Glu or absentMOD_RES(26)..(28)May or
may not be presentMOD_RES(29)..(29)Glu, Gln or
absentMOD_RES(30)..(32)May or may not be
presentmisc_feature(1)..(32)misc_feature(1)..(32)This sequence
contains at least one macrocycle-forming linker which connects at
least one pair of amino acids at positions 1 to 28see specification
as filed for detailed description of substitutions and preferred
embodiments 3Val Xaa Xaa Thr Asp Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa1 5 10 15Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Glu Leu Pro
Xaa Leu Trp Leu 20 25 30432PRTArtificial SequenceDescription of
Artificial Sequence Synthetic polypeptideMOD_RES(1)..(1)May or may
not be presentMOD_RES(2)..(2)Ile, Phe or absentMOD_RES(3)..(3)Asp,
Arg or absentMOD_RES(4)..(5)May or may not be
presentMOD_RES(6)..(6)Phe, Ala, Glu, Ser, Dpr, Asn or
absentMOD_RES(7)..(7)Ile, Ala, Glu, Ser or
absentMOD_RES(8)..(8)Asp, Ala, Ser, Dpr or
absentMOD_RES(9)..(9)Glu, Ala, absent or any amino acid available
for cross-linkingMOD_RES(10)..(10)Glu, Ala, Ser, Dpr, Gln or any
amino acid available for cross-linkingMOD_RES(11)..(11)Val, Ala,
Asp, Ser, Dpr or any amino acid available for
cross-linkingMOD_RES(12)..(12)Leu, Ala, Glu, Ser, pL or any amino
acid available for cross-linkingMOD_RES(13)..(13)Met, Nle, Ala, Asp
or any amino acid available for cross-linkingMOD_RES(14)..(14)Ser
or any amino acid available for cross-linkingMOD_RES(15)..(15)Leu,
Ala, Asp, Ser or any amino acid available for
cross-linkingMOD_RES(16)..(16)Val, Ala, Glu, Ser, pL or any amino
acid available for cross-linkingMOD_RES(17)..(17)Ile, Ala, Glu,
Ser, Dpr, Bpa or any amino acid available for
cross-linkingMOD_RES(18)..(18)Glu or any amino acid available for
cross-linkingMOD_RES(19)..(19)Met, Nle, Ala, Glu, Ser, Dpr, Bpa or
any amino acid available for cross-linkingMOD_RES(20)..(20)Gly,
Ala, Glu, Ser or any amino acid available for
cross-linkingMOD_RES(21)..(21)Leu, Ala, Glu or
SerMOD_RES(22)..(22)Asp, Ala, Ser or absentMOD_RES(23)..(23)Arg,
Ala, Glu, Ser, Dpr or absentMOD_RES(24)..(24)Ile, Ala, Glu, Ser or
absentMOD_RES(25)..(25)Lys, Glu or absentMOD_RES(26)..(28)May or
may not be presentMOD_RES(29)..(29)Glu, Gln or
absentMOD_RES(30)..(32)May or may not be
presentmisc_feature(1)..(32)This sequence contains at least one
macrocycle-forming linker which connects at least one pair of amino
acids at positions 1 to 28see specification as filed for detailed
description of substitutions and preferred embodiments 4Val Xaa Xaa
Thr Asp Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa1 5 10 15Xaa Xaa
Xaa Xaa Xaa Xaa Xaa Xaa Xaa Glu Leu Pro Xaa Leu Trp Leu 20 25
30519PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 5Phe Ile Asp Glu Glu Val Leu Met Ser Leu Val Ile
Glu Met Ala Leu1 5 10 15Asp Arg Ile619PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
may be AcMOD_RES(9)..(9)Any amino acid available for
cross-linkingmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Any amino acid available for
cross-linkingC-term may be NH2 6Phe Ile Asp Glu Glu Val Leu Met Xaa
Leu Val Ile Xaa Met Ala Leu1 5 10 15Asp Arg Ile719PRTArtificial
SequenceDescription of Artificial Sequence Synthetic
peptideMOD_RES(8)..(8)NleMOD_RES(14)..(14)Nle 7Phe Ile Asp Glu Glu
Val Leu Leu Ser Leu Val Ile Glu Leu Ala Leu1 5 10 15Asp Arg
Ile819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term may be
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Any amino acid available for
cross-linkingmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Any amino acid available for
cross-linkingMOD_RES(14)..(14)NleC-term may be NH2 8Phe Ile Asp Glu
Glu Val Leu Leu Xaa Leu Val Ile Xaa Leu Ala Leu1 5 10 15Asp Arg
Ile927PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 9Phe Ile Asp Glu Glu Val Leu Met Ser Leu Val Ile
Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp Leu
20 251027PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideMOD_RES(9)..(9)Any amino acid available for
cross-linkingmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Any amino acid available for cross-linking
10Phe Ile Asp Glu Glu Val Leu Met Xaa Leu Val Ile Xaa Met Gly Leu1
5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp Leu 20
251123PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideMOD_RES(1)..(23)Any amino acidsee specification as
filed for detailed description of substitutions and preferred
embodiments 11Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa
Xaa Xaa Xaa1 5 10 15Xaa Xaa Xaa Xaa Xaa Xaa Xaa 201214PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 12Leu
Leu Gln Gly Glu Glu Leu Leu Arg Ala Leu Asp Gln Val1 5
101314PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideMOD_RES(8)..(8)Any amino acid available for
cross-linkingmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Any amino acid available for cross-linking
13Leu Leu Gln Gly Glu Glu Leu Xaa Arg Ala Leu Xaa Gln Val1 5
101414PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideMOD_RES(6)..(6)Any amino acid available for
cross-linkingmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Any amino acid available for cross-linking
14Leu Leu Gln Gly Glu Xaa Leu Leu Arg Ala Leu Asp Xaa Val1 5
101511PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 15Gln Leu Thr Ser Tyr Asp Cys Glu Val Asn Ala1 5
101611PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideMOD_RES(4)..(4)Any amino acid available for
cross-linkingmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(7)..(7)AbuMOD_RES(8)..(8)Any amino acid available
for cross-linking 16Gln Leu Thr Xaa Tyr Asp Xaa Xaa Val Asn Ala1 5
101727PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 17Phe Ile Asp Glu Glu Val Leu Met Ala Leu Val
Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 251827PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 18Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly Leu1 5 10 15Asp Arg Ile Lys Glu
Leu Pro Glu Leu Trp Leu 20 251927PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 19Phe Ile Asp Glu Glu Val Leu Met Ala Leu Val
Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 252027PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 20Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg Ile Lys Glu
Leu Pro Glu Leu Trp Leu 20 252119PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 21Phe Ile Asp Glu Glu Val Leu Met Ala Leu Val
Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile2219PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 22Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile2316PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 23Phe Ile Asp Glu Glu Val Leu Met Ala Leu Val
Ile Ala Met Ala Leu1 5 10 152416PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 24Phe Ile Asp Glu Glu Val
Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 152519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 25Ala Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile2619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 26Phe Ala Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile2719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 27Phe Ile Ala Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile2819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 28Phe Ile Asp Ala Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile2919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 29Phe Ile Asp Glu Ala Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 30Phe Ile Asp Glu Glu Ala
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 31Phe Ile Asp Glu Glu Val
Ala Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 32Phe Ile Asp Glu Glu Val
Leu Ala Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3319PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 33Phe Ile Asp Glu Glu Val
Leu Leu Ala Ala Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 34Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Ala Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3519PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 35Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ala Ala Leu Ala Leu1 5 10 15Asp Arg
Ile3619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 36Phe Ile Asp Glu Glu Val Leu Leu Ala Leu Val
Ile Ala Ala Ala Leu1 5 10 15Asp Arg Ile3719PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 37Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly Leu1 5 10 15Asp Arg
Ile3819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 38Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Ala1 5 10 15Asp Arg
Ile3919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 39Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Ala Arg
Ile4019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 40Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Ala
Ile4119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 41Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ala4219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 42Phe Ile Asp Glu Glu Val Leu Ala Ala Leu Val
Ile Ala Ala Ala Leu1 5 10 15Asp Arg Ile4318PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 43Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp
Arg4418PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 44Phe Ile Asp Glu Glu Val Leu Ala Ala Leu Val
Ile Ala Ala Ala Leu1 5 10 15Asp Arg4520PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(10)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(15)..(15)NleC-term NH2 45Asp Phe Ile Asp Glu Glu
Val Leu Leu Ala Leu Val Ile Ala Leu Ala1 5 10 15Leu Asp Arg Ile
204619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 46Glu Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile4719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 47Phe Glu Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile4819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 48Phe Ile Asp Glu Glu Asp
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile4919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 49Phe Ile Asp Glu Glu Val
Glu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile5019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 50Phe Ile Asp Glu Glu Val
Leu Asp Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile5119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 51Phe Ile Asp Glu Glu Val
Leu Leu Ala Asp Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile5219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising
one
double bondMOD_RES(14)..(14)NleC-term NH2 52Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Glu Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile5319PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 53Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Glu Ala Leu Ala Leu1 5 10 15Asp Arg
Ile5419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 54Phe Ile Asp Glu Glu Val Leu Leu Ala Leu Val
Ile Ala Glu Ala Leu1 5 10 15Asp Arg Ile5519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 55Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Glu Leu1 5 10 15Asp Arg
Ile5619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 56Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Glu1 5 10 15Asp Arg
Ile5719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 57Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Glu
Ile5819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 58Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Glu5920PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 59Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg Ile Glu
206019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 60Ser Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 61Phe Ser Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 62Phe Ile Ser Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6319PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 63Phe Ile Asp Glu Ser Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 64Phe Ile Asp Glu Glu Ser
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6519PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 65Phe Ile Asp Glu Glu Val
Ser Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 66Phe Ile Asp Glu Glu Val
Leu Ser Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 67Phe Ile Asp Glu Glu Val
Leu Leu Ala Ser Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 68Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Ser Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile6919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 69Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ser Ala Leu Ala Leu1 5 10 15Asp Arg
Ile7019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 70Phe Ile Asp Glu Glu Val Leu Leu Ala Leu Val
Ile Ala Ser Ala Leu1 5 10 15Asp Arg Ile7119PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 71Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ser Leu1 5 10 15Asp Arg
Ile7219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 72Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Ser1 5 10 15Asp Arg
Ile7319PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 73Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Ser Arg
Ile7419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 74Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Ser
Ile7519PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 75Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ser7617PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 76Phe Ile Asp Glu Glu Val Leu Ala Ala Leu Val
Ile Ala Ala Ala Leu1 5 10 15Asp7719PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(1)..(1)DprMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 77Xaa Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile7819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
AcMOD_RES(3)..(3)DprMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 78Phe Ile Xaa Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile7919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
AcMOD_RES(5)..(5)DprMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 79Phe Ile Asp Glu Xaa Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile8019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
AcMOD_RES(6)..(6)DprMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 80Phe Ile Asp Glu Glu Xaa
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile8119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(12)..(12)DprMOD_RES(13)..(13)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 81Phe Ile Asp Glu Glu Val Leu
Leu Ala Leu Val Xaa Ala Leu Ala Leu1 5 10 15Asp Arg
Ile8219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)DprC-term NH2 82Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Xaa Ala Leu1 5 10 15Asp Arg
Ile8319PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleMOD_RES(18)..(18)DprC-term NH2 83Phe
Ile Asp Glu Glu Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Asp Xaa Ile8418PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleMOD_RES(18)..(18)DprC-term NH2 84Phe
Ile Asp Glu Glu Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Asp Xaa8519PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 85Phe Ile Asp Glu Gln Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile8619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 86Phe Ile Asp Glu Gln Val Leu Ala Ala Leu Val
Ile Ala Ala Ala Leu1 5 10 15Asp Arg Ile8719PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(7)..(7)pLeuMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 87Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile8819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(11)..(11)pLeuMOD_RES(13)..(13)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 88Phe Ile Asp Glu Glu Val Leu
Leu Ala Leu Leu Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile8919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(12)..(12)BpaMOD_RES(13)..(13)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 89Phe Ile Asp Glu Glu Val Leu
Leu Ala Leu Val Ala Ala Leu Ala Leu1 5 10 15Asp Arg
Ile9019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)BpaC-term NH2 90Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Ala Ala Leu1 5 10 15Asp Arg
Ile9127PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcC-term NH2 91Phe Ile Asp Glu Glu Val Leu
Met Ser Leu Val Ile Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu
Pro Glu Leu Trp Leu 20 259227PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 92Phe Ile Asp Ala Glu Val Leu Ala Ser Leu Val
Ile Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259327PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 93Phe Ile Asp Glu Glu Ala Leu Met Ser Ala Val
Ile Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259427PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(7)..(7)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 94Phe Ile Asp Glu Glu Val Ala Met Ser Leu Ala
Ile Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259527PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 95Phe Ile Asp Glu Glu Val Leu Ala Ser Leu Val
Ala Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259627PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(10)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 96Phe Ile Asp Glu Glu Val Leu Met Ser Ala Val
Ile Glu Ala Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259727PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(4)..(4)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(4)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 97Phe Ile Asp Ala Glu Val Leu Met Ser Leu Ala
Ile Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259827PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 98Phe Ile Asp Glu Ala Val Leu Met Ser Leu Val
Ala Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 259927PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 99Phe Ile Asp Glu Glu Ala Leu Met Ser Leu Val
Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 2510027PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(7)..(7)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(7)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 100Phe Ile Asp Glu Glu Val Ala Met Ser Leu
Val Ile Glu Ala Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2510127PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(8)..(15)Cross-link between
residuesMOD_RES(15)..(15)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 101Phe Ile Asp Glu Glu Val Leu Ala Ser Leu
Val Ile Glu Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2510226PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 102Ile Asp Glu Glu Val Leu Met Ala Leu Val
Ile Ala Met Gly Leu Asp1 5 10 15Arg Ile Lys Glu Leu Pro Glu Leu Trp
Leu 20 2510325PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(7)..(7)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 103Asp Glu Glu Val Leu Met Ala Leu Val Ile
Ala Met Gly Leu Asp Arg1 5 10 15Ile Lys Glu Leu Pro Glu Leu Trp Leu
20 2510424PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 104Glu Glu Val Leu Met Ala Leu Val Ile Ala
Met Gly Leu Asp Arg Ile1 5 10 15Lys Glu Leu Pro Glu Leu Trp Leu
2010523PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 105Glu Val Leu Met Ala Leu Val Ile Ala Met
Gly Leu Asp Arg Ile Lys1 5 10 15Glu Leu Pro Glu Leu Trp Leu
2010626PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 106Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp 20 2510725PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 107Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile
Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu 20
2510824PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 108Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu
2010923PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 109Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro
2011022PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 110Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu
2011121PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 111Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu
2011220PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 112Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys
2011319PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 113Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile11417PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 114Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp11515PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 115Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Gly1 5 10 1511621PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 116Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu
2011717PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 117Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp11815PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 118Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala1 5 10 1511916PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 119Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Ala1 5 10 1512027PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 120Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2512127PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 121Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu
Pro Glu Leu Trp Leu 20 2512227PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 122Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 15Asp Arg Ile Lys Glu Leu
Pro Glu Leu Trp Leu 20 2512327PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 123Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2512419PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 124Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Leu1 5 10 15Asp Arg Ile12519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 125Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 15Asp Arg
Ile12616PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 126Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Leu1 5 10 1512716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 127Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1512827PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 128Phe Ile Asp Glu Ala Val Leu Ala Ala Leu
Val Ile Glu Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2512921PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 129Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu
2013017PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 130Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Leu1 5 10 15Asp13115PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 131Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala1 5 10 1513216PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 132Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Ala1 5 10 1513317PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 133Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Glu Met Ala Ala1 5 10 15Ala13419PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 134Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Glu Met Ala Leu1 5 10 15Asp
Arg Ile13519PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 135Phe Ile Asp Glu Ala
Val Leu
Met Ala Leu Val Ile Glu Leu Ala Leu1 5 10 15Asp Arg
Ile13619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 136Phe Ile Ala Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 15Asp Ala
Ile13719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 137Phe Ile Ala Glu Ala Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Ala
Ile13816PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 138Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1513916PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 139Phe Ile Ala Glu Ala Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1514019PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleMOD_RES(19)..(19)NleC-term NH2 140Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Leu Leu Ala Leu1 5 10 15Ala
Ala Leu14119PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleMOD_RES(19)..(19)NleC-term NH2 141Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp
Arg Leu14219PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleMOD_RES(16)..(16)NleMOD_RES(19)..(19)NleC-term
NH2 142Phe Ile Asp Glu Ala Val Leu Leu Ala Leu Val Ile Leu Leu Ala
Leu1 5 10 15Ala Ala Leu14319PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 143Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Ala Ala
Ile14419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 144Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Leu Leu Ala Leu1 5 10 15Ser Ser
Ile14519PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 145Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Ser Ser
Ile14617PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
5-FAMMOD_RES(1)..(1)Beta-AlaMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(15)..(15)NleC-term NH2 146Ala Phe Ile Asp Glu Ala Val
Leu Leu Ala Leu Val Ile Glu Leu Ala1 5 10 15Leu14720PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
5-FAMMOD_RES(1)..(1)Beta-AlaMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(15)..(15)NleC-term NH2 147Ala Phe Ile Asp Glu Ala Val
Leu Leu Ala Leu Val Ile Glu Leu Ala1 5 10 15Leu Asp Arg Ile
2014817PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 148Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 15Lys14918PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 149Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 15Lys
Lys15017PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(15)..(15)NleC-term NH2 150Lys Phe Ile Asp Glu Ala Val
Leu Leu Ala Leu Val Ile Glu Leu Ala1 5 10 15Leu15118PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(7)..(7)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(10)..(10)NleMOD_RES(11)..(11)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(16)..(16)NleC-term NH2 151Lys Lys Phe Ile Asp Glu Ala
Val Leu Leu Ala Leu Val Ile Glu Leu1 5 10 15Ala
Leu15218PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(15)..(15)NleC-term NH2 152Lys Phe Ile Asp Glu Ala Val
Leu Leu Ala Leu Val Ile Glu Leu Ala1 5 10 15Leu
Lys15320PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(7)..(7)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(10)..(10)NleMOD_RES(11)..(11)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(16)..(16)NleC-term NH2 153Lys Lys Phe Ile Asp Glu Ala
Val Leu Leu Ala Leu Val Ile Glu Leu1 5 10 15Ala Leu Lys Lys
2015416PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 154Phe Ile Asp Glu Ala Ala Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1515516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 155Phe Ile Asp Glu Ala Thr Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1515616PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 156Phe Ile Asp Glu Ala Ser Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1515716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 157Phe Ile Asp Glu Ala Asn Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1515816PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 158Phe Ile Asp Glu Ala Val Leu
Leu Ala Ala Val Ile Glu Leu Ala Leu1 5 10 1515916PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 159Phe Ile Asp Glu Ala Val Leu
Leu Ala Asn Val Ile Glu Leu Ala Leu1 5 10 1516016PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 160Phe Ile Asp Glu Ala Val Leu
Leu Ala Ser Val Ile Glu Leu Ala Leu1 5 10 1516116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 161Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Glu Ala Ala Leu1 5 10
1516216PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 162Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Glu Gln Ala Leu1 5 10
1516316PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon
i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 163Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Glu Ser Ala Leu1 5 10
1516416PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 164Phe Ile Asp Ala Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1516516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 165Phe Ile Asp Ala Ala Thr Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1516616PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 166Phe Ile Asp Ala Ala Val Leu
Leu Ala Asn Val Ile Glu Leu Ala Leu1 5 10 1516716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 167Phe Ile Asp Ala Ala Thr Leu
Leu Ala Asn Val Ile Glu Leu Ala Leu1 5 10 1516816PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 168Phe Ile Asp Glu Ala
Val Leu Ala Ala Leu Val Ile Glu Leu Ala Leu1 5 10
1516916PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 169Phe Thr Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1517016PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 170Phe Ser Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1517116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 171Phe Ile Arg Glu Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1517216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 172Phe Ile Asp Arg Ala Val Leu
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1517316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 173Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Arg Leu Ala Leu1 5 10 1517415PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(7)..(7)NleMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(13)..(13)NleC-term NH2 174Ile Asp Glu Ala Val Phe Leu
Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1517514PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(3)..(3)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(3)..(7)Cross-link between
residuesMOD_RES(6)..(6)NleMOD_RES(7)..(7)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(12)..(12)NleC-term NH2 175Asp Glu Ala Val Phe Leu Ala
Leu Val Ile Glu Leu Ala Leu1 5 1017616PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
HMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 176Phe Ile Asp Glu Ala Val Phe
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1517716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 177Phe Ile Asp Glu Ala
Val Phe Ala Ala Leu Val Ile Glu Leu Ala Leu1 5 10
1517816PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 178Phe Ile Asp Glu Ala Val Phe Ala Ala Leu
Val Ile Glu Ser Ala Leu1 5 10 1517916PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 179Phe Ile
Asp Glu Ala Val Phe Leu Ala Leu Val Ile Glu Ala Ala Leu1 5 10
1518016PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 180Phe Ile Asn Gln Ala Val Phe
Leu Ala Leu Val Ile Gln Leu Ala Leu1 5 10 1518116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 181Phe Ile Asn Gln Ala
Val Phe Ala Ala Leu Val Ile Gln Leu Ala Leu1 5 10
1518216PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 182Phe Ile Asn Gln Ala Val Phe Ala Ala Leu
Val Ile Gln Ala Ala Leu1 5 10 1518316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 183Phe Ile
Asn Gln Ala Val Phe Leu Ala Leu Val Ile Gln Ala Ala Leu1 5 10
1518416PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 184Phe Ile Arg Glu Ala Val Phe
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1518516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 185Phe Ile Arg Glu Ala
Val Phe Ala Ala Leu Val Ile Glu Leu Ala Leu1 5 10
1518616PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 186Phe Ile Asp Glu Ala
Val Phe Ala Ala Leu Val Ile Arg Leu Ala Leu1 5 10
1518716PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 187Phe Ile
Arg Glu Ala Val Phe Leu Ala Leu Val Ile Glu Ala Ala Leu1 5 10
1518816PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 188Phe Ile
Asp Glu Ala Val Phe Leu Ala Leu Val Ile Arg Ala Ala Leu1 5 10
1518916PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term Dma acMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 189Phe Ile Asp Glu Ala Val Phe
Leu Ala Leu Val Ile Glu Leu Ala Leu1 5 10 1519021PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 190Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Ala Leu1 5 10 15Asp Arg Ile Lys Glu
2019119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 191Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Ala Leu1 5 10 15Asp Arg Ile19217PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 192Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Ala Leu1 5 10 15Asp19316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 193Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Ala Leu1 5 10 1519416PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 194Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Ala Ala1 5 10 1519517PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 195Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Ala Ala1 5 10 15Ala19614PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(4)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 196Leu Thr Glu Ala Val Leu Met Ser Leu Val
Ala Ser Met Ala1 5 1019714PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(4)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 197Leu Thr Glu Ala Val Leu Met Ser Leu Val
Ala Ser Ala Ala1 5 1019814PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(4)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 198Leu Thr Phe Ala Val Leu Met Ser Leu Val
Ala Ser Ala Ala1 5 1019927PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 199Phe Ile Asp Glu Ala Val Leu Ala Ser Leu
Val Ala Glu Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2520015PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 200Phe Ile Asp Glu Ala Val Leu Ala Ser Leu
Val Ala Glu Met Gly1 5 10 1520115PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 201Phe Ile
Asp Glu Ala Val Leu Leu Ser Leu Val Ala Glu Met Gly1 5 10
1520215PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 202Phe Ile Asp Glu Ala
Val Leu Met Ser Leu Val Ala Glu Leu Gly1 5 10 1520316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 203Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Gly Leu1 5 10 1520417PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 204Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Gly Leu1 5 10 15Asp20518PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 205Phe Ile Asp Glu Ala Val Leu Met Ser Leu
Val Ala Glu Met Gly Leu1 5 10 15Asp Arg20619PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 206Phe Ile Asp Glu Ala Val Leu
Leu Ser Leu Val Ala Glu Leu Ala Leu1 5 10 15Asp Arg
Ile20719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 207Phe Ile Asp Glu Ala Val Leu
Leu Ser Leu Val Ala Ala Leu Ala Leu1 5 10 15Asp Ala
Ile20819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 208Phe Ile Ala Glu Ala Val Leu
Leu Ser Leu Val Ala Glu Leu Ala Leu1 5 10 15Asp Ala
Ile20919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 209Phe Ile Ala Glu Ala Val Leu
Leu Ser Leu Val Ala Ala Leu Ala Leu1 5 10 15Asp Ala
Ile21019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 210Phe Ile Ala Glu Ala Val Leu
Leu Ser Leu Val Ala Ala Leu Ala Leu1 5 10 15Ala Ala
Ile21116PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 211Phe Ile Asp Glu Ala Val Leu
Leu Ser Leu Val Ala Glu Leu Ala Leu1 5 10 1521216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 212Phe Ile Asp Glu Ala Val Leu
Leu Ser Leu Val Ala Ala Leu Ala Leu1 5 10 1521316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 213Phe Ile Ala Glu Ala Val Leu
Leu Ser Leu Val Ala Glu Leu Ala Leu1 5 10 1521416PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(12)..(12)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 214Phe Ile Ala Glu Ala Val Leu
Leu Ser Leu Val Ala Ala Leu Ala Leu1 5 10 1521516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(13)..(13)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 215Phe Ile Asp Glu Glu Ala Leu
Leu Ser Leu Val Ile Ala Leu Ala Leu1 5 10 1521619PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(13)..(13)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 216Phe Ile Asp Glu Glu Ala Leu
Leu Ser Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile21727PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R5-pentenyl-alanine olefin amino acid connected by an all-carbon
comprising one double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Amino acid comprising two pentenyl-alanine
olefin side chains, each of which is crosslinked to another amino
acid as indicatedmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 217Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Ala Met Gly Leu1 5 10 15Asp Arg Ile Lys Glu Leu Pro Glu Leu
Trp Leu 20 2521816PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
R5-pentenyl-alanine olefin amino acid connected by an all-carbon
comprising one double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondMOD_RES(14)..(14)NleC-term NH2 218Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
1521915PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Amino acid comprising two pentenyl-alanine
olefin side chains, each of which is crosslinked to another amino
acid as indicatedmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine olefin amino
acid connected by an all-carbon comprising one double bondC-term
NH2
219Phe Ile Asp Glu Ala Val Leu Met Ala Leu Val Ile Ala Met Ala1 5
10 1522016PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 220Phe Ile Asp Glu Ala Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1522116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Amino acid comprising two pentenyl-alanine
olefin side chains, each of which is crosslinked to another amino
acid as indicatedmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine olefin amino
acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 221Phe Ile Asp Glu Ala Val Leu
Glu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1522216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 222Phe Ile Asp Glu Ala Arg Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1522316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 223Phe Ile Asp Glu Ala Thr Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1522416PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 224Phe Ile Asp Glu Ala Asn Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1522516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 225Phe Ile Asp Glu Ala Val Leu
Leu Ala Arg Val Ile Ala Leu Ala Leu1 5 10 1522616PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 226Phe Ile Asp Glu Ala Val Leu
Leu Ala Asn Val Ile Ala Leu Ala Leu1 5 10 1522716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondC-term NH2 227Phe Ile Asp Glu Ala Val Leu Leu Ala Leu Val Ile
Ala Ala Ala Leu1 5 10 1522816PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondC-term NH2 228Phe Ile Asp Glu Ala Val Leu Leu Ala Leu Val Ile
Ala Gln Ala Leu1 5 10 1522916PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondC-term NH2 229Phe Ile Asp Glu Ala Val Leu Leu Ala Leu Val Ile
Ala Arg Ala Leu1 5 10 1523016PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
pentenyl-alanine olefin side chains, each of which is crosslinked
to another amino acid as indicatedmisc_feature(9)..(13)Cross-link
between residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine
olefin amino acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 230Phe Ile Asp Ala Ala Thr Leu
Leu Ala Ser Val Ile Ala Leu Ala Leu1 5 10 1523116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R-azide 1,5 triazole (3 carbon) alanine
olefin amino acid connected by an all-carbon crosslinker comprising
one double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(8)..(8)NleMOD_RES(9)..(9)Amino acid comprising two
R5-pentenyl-alanine olefin side chains, each of which is
crosslinked to another amino acid as
indicatedmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me azide 1,5 triazole (3 carbon)
alanine olefin amino acid connected by an all-carbon crosslinker
comprising one double bondMOD_RES(14)..(14)NleC-term NH2 231Phe Ile
Asp Glu Ala Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
1523215PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(5)..(5)AibMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 232Phe Ile Asp Glu Xaa Val Leu Met Ala Leu
Val Ile Ala Met Ala1 5 10 1523316PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 233Ala Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1523416PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 234Phe Ile Asp Ala Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1523516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 235Phe Ile Asp Glu Glu
Val Leu Leu Ala Phe Val Ile Ala Leu Ala Leu1 5 10
1523616PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 236Phe Ile Asp Glu Glu
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Phe1 5 10
1523719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 237Phe Ile Ala Glu Glu
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Ala
Ile23819PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 238Phe Ile Ala Glu Ala
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Ala
Ile23919PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 239Phe Ile Ala Glu Ala
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Ala Ala
Ile24016PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 240Phe Ile Asp Glu Glu Val Leu Leu Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1524116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 241Phe Ile Asp Glu Glu
Val Leu Met Ala Leu Val Ile Ala Leu Ala Leu1 5 10
1524216PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 242Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Phe1 5 10 1524316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(16)..(16)NleC-term NH2 243Phe Ile Asp Glu Glu
Val Leu Met Ala Leu Val Ile Ala Met Ala Leu1 5 10
1524416PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
AcMOD_RES(4)..(4)Phe-4coohMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 244Phe Ile Asp Phe Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Phe1 5 10 1524517PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 245Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Leu24616PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 246Phe Ile Ser Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1524716PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 247Phe Ile Thr Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1524816PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 248Phe Ile Asn Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1524916PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 249Phe Ile Asp Gln Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1525016PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 250Phe Ile Asp Glu Gln Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1525116PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 251Phe Ile Asp Glu Asn Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1525216PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 252Phe Ile Asp Glu Glu Val Leu Met Ala Phe
Val Ile Ala Met Ala Leu1 5 10 1525316PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(16)..(16)CbaC-term NH2 253Phe Ile Asp Glu Glu
Val Leu Met Ala Leu Val Ile Ala Met Ala Ala1 5 10
1525416PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 254Phe Ile Asp Glu Ser Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1525516PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 255Phe Ile Asp Glu Thr Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 1525617PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
5-FAMMOD_RES(1)..(1)Beta-AlaMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(10)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(15)..(15)NleC-term NH2 256Ala Phe Ile Asp Glu
Glu Val Leu Leu Ala Leu Val Ile Ala Leu Ala1 5 10
15Leu25716PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
R5-pentenyl-alanine olefin amino acid connected by an all-carbon
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine olefin amino
acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 257Phe Ile Asp Glu Glu Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 1525817PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 258Phe Ile Asp Glu Glu
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Leu25916PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(7)..(7)NleMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(13)..(13)NleC-term NH2 259Ile Asp Glu Glu Val
Phe Leu Ala Leu Val Ile Ala Leu Ala Leu Leu1 5 10
1526015PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(6)..(6)NleMOD_RES(7)..(7)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(12)..(12)NleC-term NH2 260Asp Glu Glu Val Phe
Leu Ala Leu Val Ile Ala Leu Ala Leu Leu1 5 10 1526117PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
HMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 261Phe Ile Asp Glu Glu
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Leu26217PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 262Phe Ile Asp Glu Glu
Val Phe Ala Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Leu26317PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 263Phe Ile Asp Glu Glu Val Phe Leu Ala Leu
Val Ile Ala Ala Ala Leu1 5 10 15Leu26417PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 264Phe Ile Asn Gln Gln
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Leu26517PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 265Phe Ile Asp Glu Ala
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Leu26617PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 266Phe Ile Asp Gln Ala
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10
15Leu26717PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 267Phe Ile Asp Gln Ala
Val Phe Leu Ala Asn Val Ile Ala Leu Ala Leu1 5 10
15Leu26817PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 268Phe Ile Asp Gln Ala
Val Phe Leu Ala Ser Val Ile Ala Leu Ala Leu1 5 10
15Leu26917PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 269Phe Ile Asp Gln Ala
Val Phe Leu Ala Arg Val Ile Ala Leu Ala Leu1 5 10
15Leu27017PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 270Phe Ile Asp Gln Ala
Val Phe Leu Ala His Val Ile Ala Leu Ala Leu1 5 10
15Leu27117PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 271Phe Ile Asp Gln Ala Val Phe Leu Ala Leu
Val Ile Ala Gln Ala Leu1 5 10 15Leu27217PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 272Phe Ile Asp Gln Ala Val Phe Leu Ala Leu
Val Ile Ala Arg Ala Leu1 5 10 15Leu27317PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 273Phe Ile Asp Gln Ala Val Phe Leu Ala Leu
Val Ile Ala Ser Ala Leu1 5 10 15Leu27417PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 274Phe Ile Asp Gln Ala Val Phe Leu Ala Leu
Val Ile Ala His Ala Leu1 5 10 15Leu27517PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 275Phe Ile Asp Gln Ala Val Phe Leu Ala Asn
Val Ile Ala His Ala Leu1 5 10 15Leu27617PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 276Phe Ile Asp Gln Ala Val Phe Leu Ala His
Val Ile Ala Gln Ala Leu1 5 10 15Leu27717PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 277Phe Ile Asp Gln Ala Val Phe Leu Ala Ser
Val Ile Ala Arg Ala Leu1 5 10 15Leu27817PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 278Phe Ile Asp Gln Ala Val Phe Leu Ala Arg
Val Ile Ala Ser Ala Leu1 5 10 15Leu27920PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
5-FAMMOD_RES(1)..(1)Beta-AlaMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(10)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(15)..(15)NleC-term NH2 279Ala Phe Ile Asp Glu
Glu Val Leu Leu Ala Leu Val Ile Ala Leu Ala1 5 10 15Leu Asp Arg Ile
2028019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 280Phe Ile Asp Glu Glu Val Phe Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile28119PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 281Phe Ile Asp Glu Glu
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile28219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 282Phe Ile Asp Glu Ala Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile28319PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 283Phe Ile Asp Gln Glu Val Phe Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile28419PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 284Phe Ile Asp Gln Ala Val Phe Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile28519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 285Phe Ile Asp Gln Glu
Val Phe Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile28619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 286Phe Ile Asp Gln Ala Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asn Arg Ile28719PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 287Phe Ile Asn Gln Ala Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile28819PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 288Phe Ile Asn Gln Ala Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asn Arg Ile28919PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 289Phe Ile Asp Gln Ala
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asn Arg
Ile29019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 290Phe Ile Asp Glu Glu Phe Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29119PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 291Phe Ile Asp Glu Glu Phe Phe Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29219PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 292Phe Ile Asp Glu Glu Val Phe Met Ala Leu
His Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29319PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 293Phe Ile Asp Glu Glu Val Phe Met Ala Tyr
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29419PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 294Phe Ile Asp Glu Glu Val Leu Met Ala Leu
His Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 295Phe Ile Asp Glu Glu Val Leu Met Ala Tyr
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29619PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 296Phe Ile Asp Glu Glu Val Ile Met Ala Leu
Val Ile Ala Met Ala Val1 5 10 15Asp Arg Ile29718PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 297Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg29819PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 298Phe Ile Asp Glu Gln Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile29919PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 299Phe Ile Asp Glu Lys Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile30019PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 300Phe Ile Asp Glu His Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile30119PRTArtificial
SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 301Phe Ile Asn Glu Lys Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile30219PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 302Phe Ile Asn Glu His Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Asp Arg Ile30318PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 303Phe Ile Asp Glu Glu Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Ser Arg30418PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 304Phe Ile Asn Glu Lys Val Leu Met Ala Leu
Val Ile Ala Met Ala Leu1 5 10 15Ser Arg30519PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 305Phe Ile Asn Gln Ala
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile30624PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(14)..(14)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(14)..(18)Cross-link between
residuesMOD_RES(18)..(18)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 306Val Ile Asp Thr Asp Phe Ile Asp Glu Glu
Val Leu Ala Ala Leu Val1 5 10 15Ile Ala Ala Ala Leu Asp Arg Ile
2030724PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(14)..(14)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(14)..(18)Cross-link between
residuesMOD_RES(18)..(18)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 307Val Phe Asp Thr Asp Phe Ile Asp Glu Gln
Val Leu Ala Ala Leu Val1 5 10 15Ile Ala Ala Ala Leu Asp Arg Ile
2030823PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(14)..(14)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(14)..(18)Cross-link between
residuesMOD_RES(18)..(18)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 308Val Ile Asp Thr Asp Phe Ile Asp Glu Gln
Val Leu Ala Ala Leu Val1 5 10 15Ile Ala Ala Ala Leu Asp Ala
2030923PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(14)..(14)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(14)..(18)Cross-link between
residuesMOD_RES(18)..(18)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 309Val Ile Arg Thr Asp Phe Ile Asp Glu Gln
Val Leu Ala Ala Tyr Val1 5 10 15Ile Ala Ala Ala Leu Asp Ala
2031019PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid that is not connected by any
crosslinkerMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin
amino acid that is not connected by any
crosslinkerMOD_RES(14)..(14)NleC-term NH2 310Phe Ile Asp Glu Glu
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile31119PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
AcMOD_RES(8)..(8)NleMOD_RES(14)..(14)NleC-term NH2 311Phe Ile Asp
Glu Glu Val Leu Leu Ser Leu Val Ile Glu Leu Ala Leu1 5 10 15Asp Arg
Ile31219PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
R5-pentenyl-alanine olefin amino acid connected by an all-carbon
comprising one double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me R5-pentenyl-alanine olefin amino
acid connected by an all-carbon comprising one double
bondMOD_RES(14)..(14)NleC-term NH2 312Phe Ile Asp Glu Glu Val Leu
Leu Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile31320PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term
5-TAMRAMOD_RES(1)..(1)Beta-AlaMOD_RES(9)..(9)NleMOD_RES(10)..(10)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(10)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(15)..(15)NleC-term NH2 313Ala Phe Ile Asp Glu
Glu Val Leu Leu Ala Leu Val Ile Ala Leu Ala1 5 10 15Leu Asp Arg Ile
2031419PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)MOMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 314Phe Ile Asp Glu Glu
Val Leu Xaa Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile31519PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)MOC-term NH2 315Phe Ile Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Xaa Ala Leu1 5 10 15Asp Arg
Ile31619PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)MO2MOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)NleC-term NH2 316Phe Ile Asp Glu Glu
Val Leu Xaa Ala Leu Val Ile Ala Leu Ala Leu1 5 10 15Asp Arg
Ile31719PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)NleMOD_RES(9)..(9)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(14)..(14)MO2C-term NH2 317Phe Ile Asp Glu Glu
Val Leu Leu Ala Leu Val Ile Ala Xaa Ala Leu1 5 10 15Asp Arg
Ile31829PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(4)..(4)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(21)..(25)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(25)..(25)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 318Leu Leu Gln Ala Glu Glu Leu
Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val Ala Leu
Ser Leu Ala Ile Glu Leu Gly 20 2531929PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(21)..(25)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(25)..(25)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 319Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val Ala Leu
Ser Leu Ala Ile Glu Leu Gly 20 2532029PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(21)..(25)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(25)..(25)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 320Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Glu Val Ala Leu
Ser Leu Ala Ile Glu Leu Gly 20 2532129PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(21)..(25)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(25)..(25)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 321Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Val Ala Leu
Ser Leu Ala Ile Glu Leu Gly 20 2532229PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 322Leu Leu Gln Ala Glu
Glu Leu Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2532329PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 323Leu Leu Gln Gly Glu
Ala Leu Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2532429PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 324Leu Leu Gln Gly Glu
Glu Leu Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2532529PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 325Leu Leu Gln Gly Glu
Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2532629PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 326Leu Leu Gln Ala Glu Glu Leu
Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2532729PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 327Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2532829PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 328Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2532929PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 329Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2533029PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(21)..(28)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(28)..(28)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 330Leu Leu
Gln Ala Glu Glu Leu Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp
Glu Glu Val Ala Leu Ser Leu Val Ile Glu Ala Gly 20
2533129PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(21)..(28)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(28)..(28)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 331Leu Leu
Gln Gly Glu Ala Leu Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp
Glu Glu Val Ala Leu Ser Leu Val Ile Glu Ala Gly 20
2533229PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(21)..(28)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(28)..(28)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 332Leu Leu
Gln Gly Glu Glu Leu Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp
Glu Glu Val Ala Leu Ser Leu Val Ile Glu Ala Gly 20
2533329PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(6)..(6)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(21)..(28)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(28)..(28)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 333Leu Leu
Gln Gly Glu Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp
Glu Glu Val Ala Leu Ser Leu Val Ile Glu Ala Gly 20
2533428PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(19)..(19)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(23)..(23)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 334Leu Leu Gln Gly Glu Glu Leu Leu Arg Ala
Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Met Ala Leu Val
Ile Glu Met 20 2533528PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(23)..(23)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 335Leu Leu Gln Gly Glu Glu Leu Leu Arg Ala
Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val Leu Met Ala Leu Val
Ile Ala Met 20 2533628PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(26)..(26)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondC-term NH2 336Leu Leu Gln Gly Glu Glu Leu Leu Arg Ala
Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Met Ser Leu Val
Ala Glu Met 20 2533734PRTArtificial SequenceDescription of
Artificial Sequence Synthetic polypeptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(27)..(31)Cross-link between
residuesMOD_RES(30)..(30)AbuMOD_RES(31)..(31)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 337Phe Ile
Asp Glu Glu Val Leu Met Ala Leu Val Ile Ala Met Gly Leu1 5 10 15Asp
Arg Ile Lys Glu Leu Pro Gln Leu Thr Ala Tyr Asp Xaa Ala Val 20 25
30Asn Ala33834PRTArtificial SequenceDescription of Artificial
Sequence Synthetic polypeptideN-term AcMOD_RES(5)..(5)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(27)..(31)Cross-link between
residuesMOD_RES(30)..(30)AbuMOD_RES(31)..(31)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 338Phe Ile
Asp Glu Ala Val Leu Met Ala Leu Val Ile Glu Met Gly Leu1 5 10 15Asp
Arg Ile Lys Glu Leu Pro Gln Leu Thr Ala Tyr Asp Xaa Ala Val 20 25
30Asn Ala33934PRTArtificial SequenceDescription of Artificial
Sequence Synthetic polypeptideN-term AcMOD_RES(5)..(5)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(27)..(31)Cross-link between
residuesMOD_RES(30)..(30)AbuMOD_RES(31)..(31)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 339Phe Ile
Asp Glu Ala Val Leu Met Ser Leu Val Ala Glu Met Gly Leu1 5 10 15Asp
Arg Ile Lys Glu Leu Pro Gln Leu Thr Ala Tyr Asp Xaa Ala Val 20 25
30Asn Ala34034PRTArtificial SequenceDescription of Artificial
Sequence Synthetic polypeptideN-term AcMOD_RES(6)..(6)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(27)..(31)Cross-link between
residuesMOD_RES(30)..(30)AbuMOD_RES(31)..(31)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double bondC-term NH2 340Phe Ile
Asp Glu Glu Ala Leu Met Ser Leu Val Ile Ala Met Gly Leu1 5 10 15Asp
Arg Ile Lys Glu Leu Pro Gln Leu Thr Ala Tyr Asp Xaa Ala Val 20 25
30Asn Ala34129PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(4)..(4)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 341Leu Leu Gln Ala Glu Glu Leu
Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ala Leu Val Ile Glu Leu Gly 20 2534229PRTArtificial
SequenceDescription of Artificial Sequence Synthetic
peptideN-term
AcMOD_RES(6)..(6)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 342Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ala Leu Val Ile Glu Leu Gly 20 2534329PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 343Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ala Leu Val Ile Glu Leu Gly 20 2534429PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 344Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ala Leu Val Ile Glu Leu Gly 20 2534529PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(20)..(20)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(20)..(27)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(27)..(27)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 345Leu Leu Gln Ala Glu Glu Leu
Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Ala Leu Leu
Ser Leu Val Ile Ala Leu Gly 20 2534629PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(6)..(10)Cross-link between
residuesMOD_RES(10)..(10)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(20)..(20)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(20)..(27)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(27)..(27)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 346Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Ala Leu Leu
Ser Leu Val Ile Ala Leu Gly 20 2534729PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(20)..(20)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(20)..(27)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(27)..(27)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 347Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Glu Ala Leu Leu
Ser Leu Val Ile Ala Leu Gly 20 2534829PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(20)..(20)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(20)..(27)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(27)..(27)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 348Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Ala Leu Leu
Ser Leu Val Ile Ala Leu Gly 20 2534928PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(22)..(22)NleMOD_RES(28)..(28)NleC-term NH2 349Leu Leu Gln
Gly Glu Glu Leu Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu
Glu Val Leu Leu Ser Leu Val Ile Glu Leu 20 2535028PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(19)..(19)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 350Leu Leu Gln Gly Glu Glu Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ala Leu Val Ile Glu Leu 20 2535128PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 351Leu Leu Gln Gly Glu
Glu Leu Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu 20 2535228PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 352Leu Leu Gln Gly Glu Glu Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2535328PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(20)..(20)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(20)..(27)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(27)..(27)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 353Leu Leu Gln Gly Glu Glu Leu
Leu Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Ala Leu Leu
Ser Leu Val Ile Ala Leu 20 2535429PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 354Leu Leu Gln Gly Ala
Glu Leu Leu Ala Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2535529PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(7)..(7)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 355Leu Leu Gln Gly Glu
Glu Ala Leu Arg Ala Ala Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2535629PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(9)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 356Leu Leu Gln Gly Glu
Glu Leu Leu Ala Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2535729PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(4)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 357Leu Leu Gln Ala Glu
Glu Leu Leu Arg Ala Ala Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2535829PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(5)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 358Leu Leu Gln Gly Ala
Glu Leu Leu Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Gly 20 2535929PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(5)..(5)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(5)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 359Leu Leu Gln Gly Ala Glu Leu
Leu Ala Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2536029PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(7)..(7)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(7)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 360Leu Leu Gln Gly Glu Glu Ala
Leu Arg Ala Ala Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2536129PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(4)..(11)Cross-link between
residuesMOD_RES(11)..(11)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 361Leu Leu Gln Ala Glu Glu Leu
Leu Arg Ala Ala Asp Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Gly 20 2536228PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 362Leu Leu Gln Gly Glu
Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Ala Glu Val
Leu Leu Ala Leu Val Ile Ala Leu 20 2536328PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 363Leu Leu Gln Gly Glu
Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Ala Val
Leu Leu Ala Leu Val Ile Ala Leu 20 2536428PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 364Leu Leu Gln Gly Ala
Ala Leu Leu Arg Ala Leu Ala Ala Val Asn Ile1 5 10 15Ala Ala Ala Val
Leu Leu Ala Leu Val Ile Ala Leu 20 2536528PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 365Leu Leu Gln Gly Glu
Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Ala Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu 20 2536628PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 366Leu Leu Gln Ala Glu
Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu 20 2536724PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(2)..(2)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(2)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(18)..(18)NleMOD_RES(19)..(19)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(19)..(23)Cross-link between
residuesMOD_RES(23)..(23)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(24)..(24)NleC-term NH2 367Glu Ala Leu Leu Arg
Ala Leu Asp Ala Val Asn Ile Asp Glu Glu Val1 5 10 15Leu Leu Ala Leu
Val Ile Ala Leu 2036828PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 368Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Ala Ala Ala1 5 10 15Ala Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2536928PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 369Leu Leu Gln Gly Ala Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537028PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 370Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Ala Ala Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537128PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 371Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Ala Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537228PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 372Leu Leu Gln Gly Ala Ala Leu
Leu Arg Ala Leu Ala Ala Val Asn Ile1 5 10 15Ala Ala Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537328PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 373Leu Leu Gln Ala Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537424PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(2)..(2)Alpha-Me R8-octenyl-alanine olefin amino acid
connected by an all-carbon i to i+7 crosslinker comprising one
double bondmisc_feature(2)..(9)Cross-link between
residuesMOD_RES(9)..(9)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(15)..(15)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(15)..(22)Cross-link between
residuesMOD_RES(18)..(18)NleMOD_RES(22)..(22)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(24)..(24)NleC-term NH2 374Glu Ala Leu Leu Arg Ala Leu
Asp Ala Val Asn Ile Asp Glu Ala Val1 5 10 15Leu Leu Ser Leu Val Ala
Glu Leu 2037528PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 375Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Ala Ala Ala1 5 10 15Ala Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537628PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 376Leu Leu Gln Gly Ala Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5
10 15Asp Glu Ala Val Leu Leu Ser Leu Val Ala Glu Leu 20
2537728PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 377Leu Leu Gln Gly Glu Ala Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537828PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 378Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Ala Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2537928PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 379Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Ala Leu 20 2538028PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 380Leu Leu Gln Gly Ala Ala Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Ala Ala Ala Val Leu Leu
Ser Leu Val Ala Ala Leu 20 2538128PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 381Leu Leu Gln Gly Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Ala Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2538224PRTArtificial SequenceDescription
of Artificial Sequence Synthetic peptideN-term
AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine olefin amino acid
connected by an all-carbon i to i+4 crosslinker comprising one
double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(15)..(15)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(15)..(22)Cross-link between
residuesMOD_RES(18)..(18)NleMOD_RES(22)..(22)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(24)..(24)NleC-term NH2 382Glu Glu Leu Ala Arg Ala Leu
Ala Gln Val Asn Ile Asp Glu Ala Val1 5 10 15Leu Leu Ser Leu Val Ala
Glu Leu 2038328PRTArtificial SequenceDescription of Artificial
Sequence Synthetic peptideN-term AcMOD_RES(8)..(8)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 383Leu Leu Gln Ala Glu Glu Leu
Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu 20 2538431PRTArtificial SequenceDescription
of Artificial Sequence Synthetic polypeptideN-term
5-FAMMOD_RES(1)..(1)Beta-AlaMOD_RES(7)..(7)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(7)..(14)Cross-link between
residuesMOD_RES(14)..(14)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(23)..(23)NleMOD_RES(24)..(24)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(24)..(28)Cross-link between
residuesMOD_RES(28)..(28)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(29)..(29)NleC-term NH2 384Ala Leu Leu Gln Gly
Glu Ala Leu Leu Arg Ala Leu Asp Ala Val Asn1 5 10 15Ile Asp Glu Glu
Val Leu Leu Ala Leu Val Ile Ala Leu Ala Leu 20 25
3038530PRTArtificial SequenceDescription of Artificial Sequence
Synthetic polypeptideN-term AcMOD_RES(6)..(6)Alpha-Me
R8-octenyl-alanine olefin amino acid connected by an all-carbon i
to i+7 crosslinker comprising one double
bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(21)..(21)Alpha-Me S5-pentenyl-alanine olefin
amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(21)..(25)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(25)..(25)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 385Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Val Ala Leu
Ser Leu Ala Ile Glu Leu Ala Leu 20 25 3038630PRTArtificial
SequenceDescription of Artificial Sequence Synthetic
polypeptideN-term AcMOD_RES(4)..(4)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(4)..(8)Cross-link between
residuesMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 386Leu Leu Gln Ala Glu
Glu Leu Ala Arg Ala Leu Asp Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu 20 25 3038730PRTArtificial
SequenceDescription of Artificial Sequence Synthetic
polypeptideN-term AcMOD_RES(8)..(8)Alpha-Me S5-pentenyl-alanine
olefin amino acid connected by an all-carbon i to i+4 crosslinker
comprising one double bondmisc_feature(8)..(12)Cross-link between
residuesMOD_RES(12)..(12)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 387Leu Leu Gln Gly Glu
Glu Leu Ala Arg Ala Leu Ala Gln Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu 20 25 3038830PRTArtificial
SequenceDescription of Artificial Sequence Synthetic
polypeptideN-term AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine
olefin amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(22)..(22)NleMOD_RES(23)..(23)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondmisc_feature(23)..(27)Cross-link between
residuesMOD_RES(27)..(27)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(28)..(28)NleC-term NH2 388Leu Leu Gln Gly Glu
Ala Leu Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Glu Val
Leu Leu Ala Leu Val Ile Ala Leu Ala Leu 20 25 3038930PRTArtificial
SequenceDescription of Artificial Sequence Synthetic
polypeptideN-term AcMOD_RES(6)..(6)Alpha-Me R8-octenyl-alanine
olefin amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(6)..(13)Cross-link between
residuesMOD_RES(13)..(13)Alpha-Me S5-pentenyl-alanine olefin amino
acid connected by an all-carbon i to i+4 crosslinker comprising one
double bondMOD_RES(19)..(19)Alpha-Me R8-octenyl-alanine olefin
amino acid connected by an all-carbon i to i+7 crosslinker
comprising one double bondmisc_feature(19)..(26)Cross-link between
residuesMOD_RES(22)..(22)NleMOD_RES(26)..(26)Alpha-Me
S5-pentenyl-alanine olefin amino acid connected by an all-carbon i
to i+4 crosslinker comprising one double
bondMOD_RES(28)..(28)NleC-term NH2 389Leu Leu Gln Gly Glu Ala Leu
Leu Arg Ala Leu Asp Ala Val Asn Ile1 5 10 15Asp Glu Ala Val Leu Leu
Ser Leu Val Ala Glu Leu Ala Leu 20 25 303906PRTArtificial
SequenceDescription of Artificial Sequence Synthetic 6xHis tag
390His His His His His His1 539132PRTArtificial SequenceDescription
of Artificial Sequence Synthetic polypeptideMOD_RES(1)..(1)May or
may not be presentMOD_RES(2)..(2)Ile, Phe or
absentMOD_RES(3)..(3)Asp, Arg or absentMOD_RES(4)..(5)May or may
not be presentMOD_RES(6)..(6)Phe, Glu, Dpr, Asn or
absentMOD_RES(7)..(7)Ile, Glu or absentMOD_RES(8)..(8)Asp, Dpr or
absentMOD_RES(9)..(9)Glu, absent or any amino acid available for
cross-linkingMOD_RES(10)..(10)Glu, Dpr, Gln or any amino acid
available for cross-linkingMOD_RES(11)..(11)Val, Asp, Dpr or any
amino acid available for cross-linkingMOD_RES(12)..(12)Leu, Glu, pL
or any amino acid available for cross-linkingMOD_RES(13)..(13)Met,
Nle, Ala, Asp or any amino acid available for
cross-linkingMOD_RES(14)..(14)Ser or any amino acid available for
cross-linkingMOD_RES(15)..(15)Leu, Asp or any amino acid available
for cross-linkingMOD_RES(16)..(16)Val, Glu, pL or any amino acid
available for cross-linkingMOD_RES(17)..(17)Ile, Glu, Dpr, Bpa or
any amino acid available for cross-linkingMOD_RES(18)..(18)Glu or
any amino acid available for cross-linkingMOD_RES(19)..(19)Met,
Nle, Ala, Glu, Dpr, Bpa or any amino acid available for
cross-linkingMOD_RES(20)..(20)Gly, Ala, Glu or any amino acid
available for cross-linkingMOD_RES(21)..(21)Leu or
GluMOD_RES(22)..(22)May or may not be presentMOD_RES(23)..(23)Arg,
Glu, Dpr or absentMOD_RES(24)..(24)Ile, Glu or
absentMOD_RES(25)..(25)Lys, Glu or absentMOD_RES(26)..(28)May or
may not be presentMOD_RES(29)..(29)Glu, Gln or
absentMOD_RES(30)..(32)May or may not be
presentmisc_feature(1)..(32)This sequence contains at least one
macrocycle-forming linker which connects at least one pair of amino
acids at positions 1 to 28see specification as filed for detailed
description of substitutions and preferred embodiments 391Val Xaa
Xaa Thr Asp Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa Xaa1 5 10 15Xaa
Xaa Xaa Xaa Xaa Asp Xaa Xaa Xaa Glu Leu Pro Xaa Leu Trp Leu 20 25
30
* * * * *