U.S. patent application number 14/631962 was filed with the patent office on 2017-11-02 for enzymatic hydrolysis of disaccharides and oligosaccharides using alpha-glucosidase enzymes.
The applicant listed for this patent is E I DU PONT DE NEMOURS AND COMPANY. Invention is credited to Robert Dicosimo, Erwin Columbus Hago, Susan Marie Hennessey, Ling Hua, KEVIN D NAGY, Rodrigo Ramirez, Jayarama K Shetty, Zhongmei Tang, Zheyong Yu.
Application Number | 20170314050 14/631962 |
Document ID | / |
Family ID | 53881631 |
Filed Date | 2017-11-02 |
United States Patent
Application |
20170314050 |
Kind Code |
A9 |
NAGY; KEVIN D ; et
al. |
November 2, 2017 |
ENZYMATIC HYDROLYSIS OF DISACCHARIDES AND OLIGOSACCHARIDES USING
ALPHA-GLUCOSIDASE ENZYMES
Abstract
A method is disclosed for hydrolyzing an alpha-1,3 or alpha-1,6
glucosyl-glucose linkage in a saccharide (disaccharide or
oligosaccharide). This method comprises contacting the saccharide
with an alpha-glucosidase enzyme such as transglucosidase under
suitable conditions, during which contacting step the enzyme
hydrolyzes at least one alpha-1,3 or alpha-1,6 glucosyl-glucose
linkage of the saccharide. This method is useful for reducing the
amount of oligosaccharides in a filtrate isolated from a glucan
synthesis reaction, for example.
Inventors: |
NAGY; KEVIN D; (Wilmington,
DE) ; Hago; Erwin Columbus; (Cedar Rapids, IA)
; Shetty; Jayarama K; (Pleasonton, CA) ;
Hennessey; Susan Marie; (Avondale, PA) ; Dicosimo;
Robert; (Chadds Ford, PA) ; Hua; Ling;
(Hockessin, DE) ; Ramirez; Rodrigo; (Campinas,
BR) ; Tang; Zhongmei; (Shanghai, CN) ; Yu;
Zheyong; (Shanghai, CN) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
E I DU PONT DE NEMOURS AND COMPANY |
Wilmington |
DE |
US |
|
|
Prior
Publication: |
|
Document Identifier |
Publication Date |
|
US 20150240279 A1 |
August 27, 2015 |
|
|
Family ID: |
53881631 |
Appl. No.: |
14/631962 |
Filed: |
February 26, 2015 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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61945241 |
Feb 27, 2014 |
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61945233 |
Feb 27, 2014 |
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62004290 |
May 29, 2014 |
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62004308 |
May 29, 2014 |
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62004312 |
May 29, 2014 |
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62004300 |
May 29, 2014 |
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62004314 |
May 29, 2014 |
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62004305 |
May 29, 2014 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C12P 7/14 20130101; C12P
19/04 20130101; C12P 19/02 20130101; C12P 19/16 20130101; Y02E
50/10 20130101; C12P 7/06 20130101; C12P 19/18 20130101; Y02E 50/17
20130101; C12P 19/14 20130101 |
International
Class: |
C12P 19/14 20060101
C12P019/14; C12P 19/16 20060101 C12P019/16; C12P 19/02 20060101
C12P019/02; C12P 7/14 20060101 C12P007/14; C12P 19/04 20060101
C12P019/04; C12P 19/18 20060101 C12P019/18; C12P 7/06 20060101
C12P007/06 |
Foreign Application Data
Date |
Code |
Application Number |
Feb 25, 2015 |
CN |
PCT/CN2015/073269 |
Claims
1. A method of hydrolyzing an alpha-1,3 or alpha-1,6
glucosyl-glucose linkage in a saccharide comprising at least one
alpha-1,3 or alpha-1,6 glucosyl-glucose linkage, wherein the
saccharide is a disaccharide or oligosaccharide, and wherein the
method comprises: contacting the saccharide with an
alpha-glucosidase enzyme under suitable conditions, wherein said
alpha-glucosidase enzyme hydrolyzes at least one alpha-1,3 or
alpha-1,6 glucosyl-glucose linkage of the saccharide, and wherein
the amount of the saccharide is reduced compared to the amount of
the saccharide that was present prior to said contacting.
2. The method of claim 1, wherein the alpha-glucosidase enzyme is
immobilized.
3. The method of claim 1, wherein the degree of polymerization of
the saccharide before hydrolysis is 3 to 7.
4. The method of claim 1, wherein the concentration of the
saccharide after the contacting step is less than 50% of the
concentration of the saccharide that was present prior to said
contacting.
5. The method of claim 1, wherein the suitable conditions comprise
(i) a glucan synthesis reaction, or (ii) a fraction obtained from
the glucan synthesis reaction; wherein the saccharide is a
byproduct of the glucan synthesis reaction.
6. The method of claim 5, wherein the glucan synthesis reaction
produces at least one insoluble alpha-glucan product.
7. The method of claim 6, wherein the fraction is a filtrate of the
glucan synthesis reaction.
8. The method of claim 5, wherein the glucan synthesis reaction
produces at least one soluble alpha-glucan product that is (i) a
product of a glucosyltransferase, or (ii) a product of the
concerted action of both a glucosyltransferase and an
alpha-glucanohydrolase capable of hydrolyzing glucan polymers
having one or more alpha-1,3-glycosidic linkages or one or more
alpha-1,6-glycosidic linkages.
9. The method of claim 8, wherein the fraction is a chromatographic
fraction of the glucan synthesis reaction.
10. The method of claim 1, wherein the alpha-glucosidase enzyme is
a transglucosidase.
11. A composition produced by contacting a saccharide with an
alpha-glucosidase enzyme, wherein said saccharide is a disaccharide
or oligosaccharide and comprises at least one alpha-1,3 or
alpha-1,6 glucosyl-glucose linkage, wherein said enzyme hydrolyzes
at least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of the
saccharide, and wherein said composition comprises a reduced amount
of the saccharide compared to the amount of the saccharide that was
present prior to said contacting.
12. The composition of claim 11, wherein the degree of
polymerization of the saccharide before hydrolysis is 3 to 7.
13. The composition of claim 11, wherein the saccharide is in (i) a
glucan synthesis reaction, or (ii) a fraction obtained from the
glucan synthesis reaction; wherein the saccharide is a byproduct of
the glucan synthesis reaction.
14. A method of enriching fructose present in a fraction of a
glucan synthesis reaction, comprising: (a) contacting a fraction
obtained from a glucan synthesis reaction with an alpha-glucosidase
enzyme under suitable conditions, wherein said alpha-glucosidase
enzyme hydrolyzes at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage of a disaccharide or oligosaccharide
comprised within the fraction; and (b) separating fructose from the
hydrolyzed fraction of step (a) to obtain a composition having a
higher concentration of fructose compared to the fructose
concentration of the fraction of step (a).
15. A fermentation method comprising: (a) contacting a fraction
obtained from a glucan synthesis reaction with an alpha-glucosidase
enzyme under suitable conditions, wherein said alpha-glucosidase
enzyme hydrolyzes at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage of a disaccharide or oligosaccharide
comprised within said fraction; (b) fermenting the fraction of step
(a) with a microbe to yield a product, wherein said fermenting is
performed after step (a) or simultaneously with step (a); and (c)
optionally, isolating the product of (b); wherein the yield of the
product of (b) is increased compared to the product yield of
fermenting a fraction of the glucan synthesis reaction that has not
been contacted with the alpha-glucosidase enzyme.
Description
[0001] This application claims the benefit of U.S. Provisional
Application Nos. 61/945,233 (filed Feb. 27, 2014), 61/945,241
(filed Feb. 27, 2014), 62/004,290 (filed May 29, 2014), 62/004,308
(filed May 29, 2014), 62/004,312 (filed May 29, 2014), 62/004,300
(filed May 29, 2014), 62/004,314 (filed May 29, 2014), and
62/004,305 (filed May 29, 2014), all of which are incorporated
herein by reference in their entireties.
FIELD OF INVENTION
[0002] The invention is in the field of enzymatic hydrolysis of
small sugar polymers. Specifically, this invention pertains to
hydrolyzing disaccharides and oligosaccharides comprising one or
more alpha-1,3 or alpha-1,6 glucosyl-glucose linkages with an
alpha-glucosidase enzyme.
REFERENCE TO SEQUENCE LISTING SUBMITTED ELECTRONICALLY
[0003] The official copy of the sequence listing is submitted
electronically via EFS-Web as an ASCII formatted sequence listing
with a file named CL6220USNP_SequenceListing_ST25.txt created on
Feb. 11, 2015, and having a size of 266 kilobytes and is filed
concurrently with the specification. The sequence listing contained
in this ASCII-formatted document is part of the specification and
is herein incorporated by reference in its entirety.
BACKGROUND
[0004] Transglucosidases (EC.2.4.1.24, 1,4-alpha-glucan
6-alpha-glucosyltransferase) are D-glucosyltransferase enzymes that
catalyze both hydrolytic and transfer reactions on incubation with
alpha-D-gluco-oligosaccharides (1951, Pazur and French, J. Amer.
Chem. Soc. 73:3536). Maltose is the most preferred substrate for
transglucosylation reactions with this enzyme. Transfer occurs most
frequently to HO-6, producing isomaltose from D-glucose, or panose
(6-O-alpha-glucosyl maltose) from maltose. Transglucosidase can
also transfer a glucosyl residue to the HO-2 or HO-3 of another
D-glucosyl unit to form Kojibiose or Nigerose. This enzyme can
further transfer a D-glucosyl unit back to HO-4 to reform
maltose.
[0005] As a result of transglucosylation reactions with
transglucosidase, malto-oligosaccharide residues are converted to
isomalto-oligosaccharides (IMO) containing a higher proportion of
glucosyl residues linked by alpha-D-1,6 glycosidic linkages from
the non-reducing end. IMO sugars are used in many food and beverage
formulations in Asia. Brier et al. (U.S. Patent Appl. Publ. No.
2003/0167929) disclosed using transglucosidase to produce IMO from
barley wort.
[0006] Poulose et al. (U.S. Patent Appl. Publ. No. 2008/0229514)
disclosed using transglucosidase to degrade polysaccharides such as
xanthan and guar gums. Xanthan gum comprises a cellulosic backbone
in which alternate glucoses are 1,3-linked to branches containing
mannose and glucuronic acid. The backbone of guar gum comprises
beta-1,4-linked mannose residues to which galactose residues are
alpha-1,6-linked at every other mannose.
[0007] Lantero et al. (U.S. Pat. No. 5,770,437) disclosed using a
transglucosidase to degrade sucrose, melezitose and trehalulose.
These sugars comprise glucose linked to fructose via 1,2-(sucrose),
1,3-(melezitose), or 1,1-(trehalulose) linkages.
[0008] Although various hydrolytic activities of transglucosidase
have been disclosed, this type of enzyme is generally considered to
be an alpha-glucosidase, given its ability to hydrolyze
alpha-linkages between two glucosyl residues. For example,
transglucosidase is associated with having maltase activity
(hydrolysis of the alpha-1,4 glycosidic link between the two
glucosyl residues of maltose), which is a type of alpha-glucosidase
activity.
[0009] Notwithstanding the foregoing disclosures, surprisingly, it
has now been found that alpha-glucosidases such as transglucosidase
(EC 2.4.1.24) can hydrolyze alpha-1,3 and alpha-1,6 glycosidic
linkages of glucosyl-glucose. Alpha-glucosidase enzymes are
disclosed herein as being useful for degrading disaccharides and
oligosaccharides containing glucosyl-alpha-1,3-glucose and
glucosyl-alpha-1,6-glucose.
SUMMARY OF INVENTION
[0010] In one embodiment, the invention concerns a method of
hydrolyzing an alpha-1,3 or alpha-1,6 glucosyl-glucose linkage in a
saccharide comprising at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage, wherein the saccharide is a disaccharide
or oligosaccharide, and wherein the method comprises: contacting
the saccharide with an alpha-glucosidase enzyme under suitable
conditions, wherein the alpha-glucosidase enzyme hydrolyzes at
least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of the
saccharide, and wherein the amount of the saccharide is reduced
compared to the amount of the saccharide that was present prior to
the contacting step.
[0011] In another embodiment, the alpha-glucosidase enzyme of the
hydrolysis method is immobilized.
[0012] In another embodiment, the saccharide of the hydrolysis
method has a degree of polymerization before hydrolysis of 3 to 7.
In another embodiment, the concentration of the saccharide after
the contacting step is less than 50% of the concentration of the
saccharide that was present prior to the contacting step.
[0013] In another embodiment, the suitable conditions of the
hydrolysis method comprise (i) a glucan synthesis reaction, or (ii)
a fraction obtained from the glucan synthesis reaction; wherein the
saccharide is a byproduct of the glucan synthesis reaction. The
glucan synthesis reaction produces at least one insoluble
alpha-glucan product in another embodiment. In another embodiment,
the fraction is a filtrate of the glucan synthesis reaction. In
another embodiment, the glucan synthesis reaction produces at least
one soluble alpha-glucan product that is (i) a product of a
glucosyltransferase, or (ii) a product of the concerted action of
both a glucosyltransferase and an alpha-glucanohydrolase capable of
hydrolyzing glucan polymers having one or more alpha-1,3-glycosidic
linkages or one or more alpha-1,6-glycosidic linkages. The fraction
is a chromatographic fraction of the glucan synthesis reaction in
another embodiment in which the glucan synthesis reaction produces
at least one soluble alpha-glucan product.
[0014] In another embodiment, the alpha-glucosidase enzyme is a
transglucosidase. In another embodiment, the transglucosidase
comprises an amino acid sequence that is at least 90% identical to
SEQ ID NO:1
[0015] In another embodiment, the invention concerns a composition
produced by contacting a saccharide with an alpha-glucosidase
enzyme, wherein the saccharide is a disaccharide or oligosaccharide
and comprises at least one alpha-1,3 or alpha-1,6 glucosyl-glucose
linkage, wherein the alpha-glucosidase enzyme hydrolyzes at least
one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of the
saccharide, and wherein the composition comprises a reduced amount
of the saccharide compared to the amount of the saccharide that was
present prior to the contacting step.
[0016] In another embodiment, the saccharide of the composition has
a degree of polymerization before hydrolysis of 3 to 7. The
concentration of the saccharide after the contacting step is less
than 50% of the concentration of the saccharide that was present
prior to the contacting step, for example.
[0017] In another embodiment, the saccharide of the composition is
in (i) a glucan synthesis reaction, or (ii) a fraction obtained
from the glucan synthesis reaction; wherein the saccharide is a
byproduct of the glucan synthesis reaction.
[0018] In another embodiment, the fraction is a filtrate of the
glucan synthesis reaction or a chromatographic fraction of the
glucan synthesis reaction.
[0019] In another embodiment, the invention concerns a method of
enriching fructose present in a fraction of a glucan synthesis
reaction, comprising: (a) contacting a fraction obtained from a
glucan synthesis reaction with an alpha-glucosidase enzyme under
suitable conditions, wherein the alpha-glucosidase enzyme
hydrolyzes at least one alpha-1,3 or alpha-1,6 glucosyl-glucose
linkage of a disaccharide or oligosaccharide comprised within the
fraction; and (b) separating fructose from the hydrolyzed fraction
of step (a) to obtain a composition having a higher concentration
of fructose compared to the fructose concentration of the fraction
of step (a).
[0020] In another embodiment, the invention concerns a fermentation
method comprising: (a) contacting a fraction obtained from a glucan
synthesis reaction with an alpha-glucosidase enzyme under suitable
conditions, wherein the alpha-glucosidase enzyme hydrolyzes at
least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of a
disaccharide or oligosaccharide comprised within the fraction; (b)
fermenting the fraction of step (a) with a microbe to yield a
product, wherein the fermenting can be performed after step (a) or
simultaneously with step (a); and (c) optionally, isolating the
product of (b); wherein the yield of the product of (b) is
increased compared to the product yield of fermenting a fraction of
the glucan synthesis reaction that has not been contacted with the
enzyme.
BRIEF DESCRIPTION OF THE DRAWINGS AND SEQUENCES
[0021] FIG. 1: .sup.1H NMR spectra of glucan reaction filtrate
material before (starting material) and after (treated material)
hydrolysis treatment with NOVO 188 enzyme (see Examples 2-3).
[0022] FIG. 2: .sup.1H NMR spectra of glucan reaction filtrate
material before (starting material) and after (treated material)
hydrolysis treatment with TG L-2000 transglucosidase (see Examples
2-3).
TABLE-US-00001 TABLE 1 Summary of Nucleic Acid and Protein Sequence
Identification Numbers Protein Nucleic acid SEQ ID Description SEQ
ID NO. NO. "TG L-2000", A. niger transglucosidase 1 (mature form
without signal peptide) (965 aa) "GC 321 Glucoamylase", T. reesei 2
glucoamylase (TrGA) (mature form (599 aa) without signal peptide)
"gtfJ", Streptococcus salivarius 3 glucosyltransferase. The first
42 amino (1477 aa) acids of the protein are deleted compared to
GENBANK Identification No. 47527; a start methionine is included.
"Aclglu1", Aspergillus clavatus alpha- 4 5 glucosidase, full-length
precursor form (3147 bases) (990 aa) including signal peptide.
"Aclglu1", Aspergillus clavatus alpha- 6 glucosidase, mature form
lacking signal (971 aa) peptide. "Nfiglu1", Neosartorya fischeri
alpha- 7 8 glucosidase, full-length precursor form (3158 bases)
(988 aa) including signal peptide. "Nfiglu1", Neosartorya fischeri
alpha- 9 glucosidase, mature form lacking signal (969 aa) peptide.
"Ncrglu1", Neurospora crassa alpha- 10 11 glucosidase, full-length
precursor form (3385 bases) (1044 aa) including signal peptide.
"Ncrglu1", Neurospora crassa alpha- 12 glucosidase, mature form
lacking signal (1022 aa) peptide. "TauSec098", Rasamsonia
composticola 13 14 alpha-glucosidase, full-length precursor (3293
bases) (1035 aa) form including signal peptide. "TauSec098",
Rasamsonia composticola 15 alpha-glucosidase, mature form lacking
(1013 aa) signal peptide. "TauSec099", Rasamsonia composticola 16
17 alpha-glucosidase, full-length precursor (3162 bases) (990 aa)
form including signal peptide. "TauSec099", Rasamsonia composticola
18 alpha-glucosidase, mature form lacking (973 aa) signal peptide.
"BloGlu1", Bifidobacterium longum 19 20 (subsp. longum JDM301)
alpha- (1815 bases) (604 aa) glucosidase (wild type). "BloGlu1",
Bifidobacterium longum 21 (subsp. longum JDM301) alpha- (1812
bases) glucosidase, codon-optimized sequence. "BloGlu2",
Bifidobacterium longum 22 alpha-glucosidase (wild type). (604 aa)
"BloGlu2", Bifidobacterium longum 23 24 alpha-glucosidase,
codon-optimized (1812 bases) (604 aa) sequence encoding amino acid
sequence. "BloGlu3", Bifidobacterium longum 25 26 (subsp. F8)
alpha-glucosidase (wild (1815 bases) (604 aa) type) "BloGlu3",
Bificiobacterium longum 27 (subsp. F8) alpha-glucosidase, codon-
(1812 bases) optimized sequence encoding amino acid sequence.
"BpsGlu1", Bifidobacterium 28 pseudolongum alpha-glucosidase (wild
(585 aa) type). "BpsGlu1", Bifidobacterium 29 30 pseudolongum
alpha-glucosidase, (1755 bases) (586 aa) codon-optimized sequence
encoding amino acid sequence. "BthGlu1", Bifidobacterium
thermophilum 31 32 RBL67 alpha-glucosidase (wild type). (1806
bases) (601 aa) "BthGlu1", Bifidobacterium thermophilum 33 RBL67
alpha-glucosidase, codon- (1803 bases) optimized sequence.
"BbrGlu2", Bifidobacterium breve alpha- 34 glucosidase (wild type).
(662 aa) "BbrGlu2", Bifidobacterium breve alpha- 35 36 glucosidase,
codon-optimized sequence (1812 bases) (604 aa) encoding amino acid
sequence. "BbrGlu5", Bifidobacterium breve ACS- 37 38 071-V-Sch8b
alpha-glucosidase (wild (1821 bases) (606 aa) type). "BbrGlu5",
Bifidobacterium breve ACS- 39 071-V-Sch8b alpha-glucosidase, codon-
(1818 bases) optimized sequence. "Gtf-S", Streptococcus sp. C150 40
glucosyltransferase, GENBANK GI No. (1570 aa) 321278321. "GTF0459",
Streptococcus sp. C150 41 42 glucosyltransferase, N-terminal- (4179
bases) (1392 aa) truncated version of GENBANK GI No. 321278321.
"Gtf-C", Streptococcus mutans MT-4239 43 glucosyltransferase,
GENBANK GI No. (1455 aa) 3130088. "GTF0088BsT1", Streptococcus
mutans 44 45 MT-4239 glucosyltransferase, N- and C- (2715 bases)
(904 aa) terminal-truncated version of GENBANK GI No. 3130088.
"MUT3325", Penicillium marneffei ATCC 46 47 18224 mutanase, GENBANK
GI No. (1308 bases) (435 aa) 212533325.
DETAILED DESCRIPTION OF THE INVENTION
[0023] The disclosures of all cited patent and non-patent
literature are incorporated herein by reference in their
entirety.
[0024] As used herein, the term "invention" or "disclosed
invention" is not meant to be limiting, but applies generally to
any of the inventions defined in the claims or described herein.
These terms are used interchangeably herein.
[0025] The terms "saccharide", "saccharide molecule" and
"carbohydrate" are used interchangeably herein and refer to a
disaccharide or oligosaccharide, unless otherwise noted. A
"disaccharide" herein refers to a carbohydrate having two
monosaccharides joined by a glycosidic linkage. An
"oligosaccharide" herein refers to a carbohydrate that consists of
2 to 9 monosaccharides, for example, joined by glycosidic linkages.
An oligosaccharide can also be referred to herein as an "oligomer".
Monosaccharides that are comprised within a disaccharide or
oligosaccharide can be referred to as "monosaccharide units" or
"monomeric units", for example. Preferred monosaccharides herein
are fructose and glucose.
[0026] The terms "glycosidic linkage" and "glycosidic bond" are
used interchangeably herein and refer to the type of covalent bond
that joins a carbohydrate molecule to another carbohydrate
molecule.
[0027] The terms "alpha-1,3 glucosyl-glucose linkage", "alpha-1,3
glucose-glucose linkage" and "glucose-alpha 1,3-glucose" herein
refers to an alpha-1,3-glycosidic linkage between two
alpha-D-glucose molecules. The terms "alpha-1,6 glucosyl-glucose
linkage", "alpha-1,6 glucose-glucose linkage" and "glucose-alpha
1,6-glucose" herein refers to an alpha-1,6-glycosidic linkage
between two alpha-D-glucose molecules. Alpha-1,3 glucosyl-glucose
linkage(s) and/or alpha-1,6 glucosyl-glucose linkage(s) herein are
comprised within a disaccharide or oligosaccharide in certain
embodiments.
[0028] The terms "alpha-1,5 glucosyl-fructose linkage", "alpha-1,5
glucose-fructose linkage" and "glucose-alpha-1,5-fructose" herein
refers to an alpha-1,5-glycosidic linkage between an
alpha-D-glucose molecule and a fructose molecule. An alpha-1,5
glucosyl-fructose linkage herein is comprised within a disaccharide
or oligosaccharide in certain embodiments.
[0029] "Alpha-D-glucose" herein can also be referred to as
"glucose".
[0030] A disaccharide containing an alpha-1,5 glucosyl-fructose
linkage is referred to herein as leucrose. The terms "leucrose" and
"D-glucopyranosyl-alpha(1-5)-D-fructopyranose" are used
interchangeably herein. Leucrose has the following structure:
##STR00001##
[0031] The terms "alpha-glucosidase", "alpha-1,4-glucosidase", and
"alpha-D-glucoside glucohydrolase" are used interchangeably herein.
Alpha-glucosidases (EC 3.2.1.20) ("EC" refers to Enzyme Commission
number) have previously been recognized as enzymes that catalyze
hydrolytic release of terminal, non-reducing (1,4)-linked
alpha-D-glucose residues from oligosaccharide (e.g., disaccharide)
and polysaccharide substrates. Alpha-glucosidases are now disclosed
herein to also have hydrolytic activity toward alpha-1,5
glucosyl-fructose linkages, and hydrolytic activity toward
alpha-1,3 and alpha-1,6 glucosyl-glucose linkages. Transglucosidase
and glucoamylase enzymes are examples of alpha-glucosidases with
such activity.
[0032] The terms "transglucosidase" (TG), "transglucosidase
enzyme", and "1,4-alpha-glucan 6-alpha-glucosyltransferase" are
used interchangeably herein. Transglucosidases (EC 2.4.1.24) have
previously been recognized as D-glucosyltransferase enzymes that
catalyze both hydrolytic and transfer reactions on incubation with
certain alpha-D-gluco-oligosaccharides. Transglucosidases are now
disclosed herein to also have hydrolytic activity toward alpha-1,5
glucosyl-fructose linkages, and hydrolytic activity toward
alpha-1,3 and alpha-1,6 glucosyl-glucose linkages.
[0033] The terms "glucoamylase" (GA), "glucoamylase enzyme", and
"alpha-1,4-glucan glucohydrolase" are used interchangeably herein.
Glucoamylases (EC 3.2.1.3) have previously been recognized as
exo-acting enzymes that catalyze hydrolysis of both alpha-1,4 and
alpha-1,6 glycosidic linkages from non-reducing ends of
glucose-containing di-, oligo- and poly-saccharides. Glucoamylases
are now disclosed herein to also have hydrolytic activity toward
alpha-1,5 glucosyl-fructose linkages.
[0034] Enzymatic hydrolysis is a process in which an enzyme
facilitates the cleavage of bonds in molecules with the addition of
the elements of water. "Hydrolyzing", "hydrolysis of", or
"hydrolytic activity toward" an alpha-1,3 or alpha 1,6
glucosyl-glucose linkage herein refers to enzymatic hydrolysis of
the alpha-1,3 or alpha-1,6 glycosidic linkage between two glucose
molecules by an alpha-glucosidase such as a transglucosidase. Such
hydrolysis occurs when contacting a disaccharide or oligosaccharide
containing an alpha-1,3 and/or alpha-1,6 glucosyl-glucose linkage
with an alpha-glucosidase herein under suitable conditions. Thus, a
"hydrolysis reaction" herein comprises at least (i) a disaccharide
or oligosaccharide containing an alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkage(s), and (ii) an alpha-glucosidase.
[0035] The term "saccharification" herein refers to a process of
breaking a saccharide (disaccharide or oligosaccharide) into its
monosaccharide components. A saccharide can be saccharified in a
hydrolysis reaction herein.
[0036] "Suitable conditions" for contacting a saccharide
(disaccharide or oligosaccharide) comprising at least one alpha-1,3
and/or alpha-1,6 glucosyl-glucose linkage with an alpha-glucosidase
herein refer to those conditions (e.g., temperature, pH, time) that
support the hydrolysis of one or more alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkages in the saccharide by the
alpha-glucosidase. Suitable conditions can comprise "aqueous
conditions", for example, comprising at least 20 wt % water.
Aqueous conditions may characterize a solution or mixture. The
solution or mixture in which a saccharide comprising at least one
alpha-1,3 and/or alpha-1,6 glucosyl-glucose linkage is contacted
with an alpha-glucosidase can be referred to as an
alpha-glucosidase reaction, for example (e.g., a transglucosidase
or glucoamylase reaction).
[0037] An "immobilized" enzyme herein refers to an enzyme that is
attached to an inert, insoluble material. Methods for preparing
immobilized enzymes are disclosed, for example, in U.S. Pat. No.
5,541,097, which is incorporated herein by reference.
[0038] The terms "glucan" and "glucan polymer" are used
interchangeably herein and refer to a polysaccharide of glucose
monomers linked by glycosidic bonds. An "alpha-glucan" herein
refers to a glucan polymer comprising at least about 80%, 81%, 82%,
83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%,
96%, 97%, 98%, 99%, or 100% alpha-glycosidic linkages.
[0039] An "insoluble glucan" herein refers to a glucan polymer that
is not soluble in aqueous conditions. An example of insoluble
glucan herein is poly alpha-1,3-glucan with a DP of at least 8 or
9. A glucosyltransferase reaction in certain embodiments as
presently disclosed produces at least one insoluble glucan
product.
[0040] The terms "soluble glucan", "soluble alpha-glucan", "soluble
fiber", "soluble glucan fiber", "soluble dietary fiber" and the
like are used interchangeably herein to refer to a glucan polymer
that is soluble in aqueous conditions. Examples of soluble glucan
herein are certain oligosaccharides, such as poly alpha-1,3-glucan
with a DP less than 8, and certain oligosaccharides disclosed in
the Examples provided below. A glucosyltransferase reaction in
certain embodiments as presently disclosed produces at least one
soluble glucan product. Another set of features that characterizes
soluble alpha-glucan compounds in certain embodiments herein is
that they are (i) water-soluble glucose oligomers having a degree
of polymerization of 3 or more, (ii) digestion-resistant (i.e.,
exhibit very slow or no digestibility) with little or no absorption
in the human small intestine, and (iii) at least partially
fermentable in the lower gastrointestinal tract. Digestibility of a
soluble glucan fiber composition can be measured using AOAC method
2009.01, for example.
[0041] The terms "poly alpha-1,3-glucan" and "alpha-1,3-glucan
polymer" are used interchangeably herein. Poly alpha-1,3-glucan is
a polymer comprising glucose monomeric units linked together by
glycosidic linkages, wherein at least about 50% of the glycosidic
linkages are alpha-1,3-glycosidic linkages. The term
"alpha-1,3-glycosidic linkage" as used herein refers to the type of
covalent bond that joins alpha-D-glucose molecules to each other
through carbons 1 and 3 on adjacent alpha-D-glucose rings.
[0042] The "molecular weight" of a glucan herein can be represented
as number-average molecular weight (M.sub.n) or as weight-average
molecular weight (M.sub.w). Alternatively, molecular weight can be
represented as Daltons, grams/mole, DP, (weight average degree of
polymerization), or DP.sub.n (number average degree of
polymerization). Various means are known in the art for calculating
these molecular weight measurements such as with high-pressure
liquid chromatography (HPLC), size exclusion chromatography (SEC),
or gel permeation chromatography (GPC).
[0043] The terms "glucosyltransferase enzyme", "gtf enzyme", "gtf
enzyme catalyst", "gtf", "glucansucrase" and the like are used
interchangeably herein. The activity of a gtf enzyme herein
catalyzes the reaction of sucrose substrate to make the products
glucan and fructose. Other products (byproducts) of a gtf reaction
can include glucose (results from when glucose is hydrolyzed from
the glucosyl-gtf enzyme intermediate complex), various soluble
oligosaccharides (e.g., DP2-DP7), and leucrose (results from when
glucose of the glucosyl-gtf enzyme intermediate complex is linked
to fructose). Wild type forms of glucosyltransferase enzymes
generally contain (in the N-terminal to C-terminal direction) a
signal peptide, a variable domain, a catalytic domain, and a
glucan-binding domain. A glucosyltransferase herein is classified
under the glycoside hydrolase family 70 (GH70) according to the
CAZy (Carbohydrate-Active EnZymes) database (Cantarel et al.,
Nucleic Acids Res. 37:D233-238, 2009).
[0044] The term "sucrose" herein refers to a non-reducing
disaccharide composed of an alpha-D-glucose molecule and a
beta-D-fructose molecule linked by an alpha-1,2-glycosidic bond.
Sucrose is known commonly as table sugar.
[0045] The terms "glucan synthesis reaction", "glucan reaction"
"gtf reaction" and the like are used interchangeably herein and
refer to a reaction that is performed by a glucosyltransferase
enzyme. A glucan synthesis reaction as used herein generally refers
to a solution comprising at least one active glucosyltransferase
enzyme in a solution comprising sucrose and water, and optionally
other components. Other components that can be in a glucan
synthesis reaction herein include fructose, glucose, leucrose,
soluble oligosaccharides (e.g., DP2-DP7), and soluble glucan
product(s), for example. Also, one or more alpha-glucanohydrolase
enzymes can be comprised in a glucan synthesis reaction in some
aspects. It would be understood that certain glucan products, such
as poly alpha-1,3-glucan with a degree of polymerization (DP) of at
least 8 or 9, are water-insoluble and thus are not dissolved in a
glucan synthesis reaction, but rather may be present out of
solution.
[0046] The terms "alpha-glucanohydrolase" and "glucanohydrolase"
are used interchangeably herein and refer to an enzyme capable of
hydrolyzing an alpha-glucan oligomer. An alpha-glucanohydrolase can
be defined by its endohydrolysis activity towards certain
alpha-D-glycosidic linkages. Examples of alpha-glucanohydrolase
enzymes herein include dextranases (EC 3.2.1.11; capable of
endohydrolyzing alpha-1,6-linked glycosidic bonds), mutanases (EC
3.2.1.59; capable of endohydrolyzing alpha-1,3-linked glycosidic
bonds), and alternanases (EC 3.2.1.-; capable of endohydrolytically
cleaving alternan).
[0047] Various factors including, but not limited to, level of
branching, the type of branching, and the relative branch length
within certain alpha-glucans may adversely impact the ability of an
alpha-glucanohydrolase to endohydrolyze some glycosidic
linkages.
[0048] The "percent dry solids" of a glucan synthesis reaction
refers to the wt % of all the sugars in a glucan synthesis
reaction. The percent dry solids of a gtf reaction can be
calculated, for example, based on the amount of sucrose used to
prepare the reaction.
[0049] A "fraction" of a glucan synthesis reaction herein refers to
a liquid solution portion of a glucan synthesis reaction. A
fraction can be a portion of, or all of, the liquid solution from a
glucan synthesis reaction, and has been separated from a soluble or
insoluble glucan product synthesized in the reaction. A fraction
can optionally be referred to as a "mother liquor" in embodiments
in which the product is an insoluble (solid) glucan product. An
example of a fraction is a filtrate of a glucan synthesis reaction.
Since a fraction can contain dissolved sugars such as sucrose,
fructose, glucose, leucrose, soluble oligosaccharides (e.g.,
DP2-DP7), a fraction can also be referred to as a "mixed sugar
solution" derived from a glucan synthesis reaction. A "hydrolyzed
fraction" herein refers to a fraction that has been treated with an
alpha-glucosidase herein to hydrolyze leucrose and/or
oligosaccharides present in the fraction.
[0050] The terms "filtrate", "glucan reaction filtrate", "glucan
filtrate" and the like are used interchangeably herein and refer to
a fraction that has been filtered away from a solid glucan product
synthesized in a glucan synthesis reaction. A "hydrolyzed filtrate"
herein refers to a filtrate that has been treated with an
alpha-glucosidase herein to hydrolyze leucrose and/or
oligosaccharides present in the filtrate.
[0051] The terms "percent by volume", "volume percent", "vol %",
"v/v %" and the like are used interchangeably herein. The percent
by volume of a solute in a solution can be determined using the
formula: [(volume of solute)/(volume of solution)].times.100%.
[0052] The terms "percent by weight", "weight percentage (wt %)",
"weight-weight percentage (% w/w)" and the like are used
interchangeably herein. Percent by weight refers to the percentage
of a material on a mass basis as it is comprised in a composition,
mixture, or solution. All percentages herein are weight
percentages, unless otherwise noted.
[0053] As used herein, "polydispersity index", "PDI",
"heterogeneity index", "dispersity" and the like refer to a measure
of the distribution of molecular mass in a given polymer (e.g., a
glucose oligomer such as a soluble alpha-glucan) sample and can be
calculated by dividing the weight average molecular weight by the
number average molecular weight (PDI=M.sub.w/M.sub.n).
[0054] The terms "increased", "enhanced" and "improved" are used
interchangeably herein. These terms refer to a greater quantity or
activity such as a quantity or activity slightly greater than the
original quantity or activity, or a quantity or activity in large
excess compared to the original quantity or activity, and including
all quantities or activities in between. Alternatively, these terms
may refer to, for example, a quantity or activity that is at least
1%, 2%, 3%, 4%, 5%, 6%, 7%, 8%, 9%, 10%, 11%, 12%, 13%, 14%, 15%,
16%, 17%, 18%, 19% or 20% more than the quantity or activity for
which the increased quantity or activity is being compared.
[0055] The terms "sequence identity" or "identity" as used herein
with respect to polynucleotide or polypeptide sequences refer to
the nucleic acid bases or amino acid residues in two sequences that
are the same when aligned for maximum correspondence over a
specified comparison window. Thus, "percentage of sequence
identity" or "percent identity" refers to the value determined by
comparing two optimally aligned sequences over a comparison window,
wherein the portion of the polynucleotide or polypeptide sequence
in the comparison window may comprise additions or deletions (i.e.,
gaps) as compared to the reference sequence (which does not
comprise additions or deletions) for optimal alignment of the two
sequences. The percentage is calculated by determining the number
of positions at which the identical nucleic acid base or amino acid
residue occurs in both sequences to yield the number of matched
positions, dividing the number of matched positions by the total
number of positions in the window of comparison and multiplying the
results by 100 to yield the percentage of sequence identity.
[0056] The Basic Local Alignment Search Tool (BLAST) algorithm,
which is available online at the National Center for Biotechnology
Information (NCBI) website, may be used, for example, to measure
percent identity between or among two or more of the polynucleotide
sequences (BLASTN algorithm) or polypeptide sequences (BLASTP
algorithm) disclosed herein. Alternatively, percent identity
between sequences may be performed using a Clustal algorithm (e.g.,
ClustalW or ClustalV). For multiple alignments using a Clustal
method of alignment, the default values may correspond to GAP
PENALTY=10 and GAP LENGTH PENALTY=10. Default parameters for
pairwise alignments and calculation of percent identity of protein
sequences using a Clustal method may be KTUPLE=1, GAP PENALTY=3,
WINDOW=5 and DIAGONALS SAVED=5. For nucleic acids, these parameters
may be KTUPLE=2, GAP PENALTY=5, WINDOW=4 and DIAGONALS SAVED=4.
Alternatively still, percent identity between sequences may be
performed using an EMBOSS algorithm (e.g., needle) with parameters
such as GAP OPEN=10, GAP EXTEND=0.5, END GAP PENALTY=false, END GAP
OPEN=10, END GAP EXTEND=0.5 using a BLOSUM matrix (e.g.,
BLOSUM62).
[0057] Various polypeptide amino acid sequences are disclosed
herein as features of certain embodiments. Variants of these
sequences that are at least about 70-85%, 85-90%, or 90%-95%
identical to the sequences disclosed herein can be used.
Alternatively, a variant amino acid sequence can have at least 70%,
71%, 72%, 73%, 74%, 75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%,
84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%,
97%, 98% or 99% identity with a sequence disclosed herein. A
variant amino acid sequence herein has the same function/activity
of the disclosed sequence, or at least about 85%, 86%, 87%, 88%,
89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% of the
function/activity of a disclosed sequence.
[0058] The term "isolated" as used in certain embodiments refers to
any cellular component that is completely separated from its native
source (e.g., an isolated polynucleotide or polypeptide molecule).
In some instances, an isolated polynucleotide or polypeptide
molecule is part of a greater composition, buffer system or reagent
mix. For example, the isolated polynucleotide or polypeptide
molecule can be comprised within a cell or organism in a
heterologous manner. Another example is an isolated
alpha-glucosidase (e.g., glucoamylase, transglucosidase), or
glucosyltransferase enzyme. The enzyme reactions (e.g.,
alpha-glucosidase reaction, glucosyltransferase reaction) disclosed
herein are synthetic, non-naturally occurring processes.
[0059] Embodiments of the disclosed invention concern a method of
hydrolyzing an alpha-1,3 or alpha-1,6 glucosyl-glucose linkage in a
saccharide comprising at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage. The saccharide is a disaccharide or
oligosaccharide. This method comprises contacting the saccharide
with an alpha-glucosidase enzyme under suitable conditions. In the
contacting step, the alpha-glucosidase enzyme hydrolyzes at least
one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of the
saccharide. Due to this hydrolysis, the amount of the saccharide is
reduced compared to the amount of the saccharide that was present
prior to the contacting step. Thus, this hydrolysis method can
alternatively be referred to as a method of reducing the amount of
a saccharide in a composition.
[0060] Significantly, it is believed to be previously unknown that
alpha-glucosidase enzymes can hydrolyze alpha-1,3 and alpha-1,6
glucosyl-glucose linkages. Alpha-glucosidase reactions following
this hydrolysis method can thus be used to remove oligosaccharide
byproducts containing these glucose-glucose linkages from a glucan
synthesis reaction and/or a fraction obtained therefrom.
[0061] Such removal represents an improvement over chemical
processes of byproduct removal, such as acid hydrolysis, which can
result in degradation of glucan product. Finally, a glucan reaction
fraction that is treated according to the above hydrolysis method
is better-suited for downstream applications such as fermentation,
for example, since the level of glucose monosaccharides is
increased in the fraction. Monosaccharides are generally more
tractable for downstream processes compared to oligosaccharide
byproducts.
[0062] An alpha-glucosidase (EC 3.2.1.20) is used in embodiments
herein to hydrolyze alpha-1,3 and/or alpha-1,6 glucosyl-glucose
linkages in a saccharide comprising at least one of these linkages.
Alpha-glucosidase enzymes have previously been recognized to
catalyze hydrolytic release of terminal, non-reducing (1,4)-linked
alpha-D-glucose residues from oligosaccharide (e.g., disaccharide)
and polysaccharide substrates. These enzymes are now disclosed
herein to also have hydrolytic activity toward alpha-1,3 and
alpha-1,6 glucosyl-glucose linkages, for example.
[0063] An alpha-glucosidase can be from any source (e.g., plant,
animal, microbe such as a bacteria or fungus/yeast), for example,
such as those sources disclosed below from which a transglucosidase
and/or glucoamylase can be derived. For example, an
alpha-glucosidase can be a fungal alpha-glucosidase. Other examples
of suitable alpha-glucosidases herein include those disclosed in
U.S. Pat. Nos. 6,355,467, 5,922,580, 5,795,766, 5,763,252, and
8,633,006, which are all incorporated herein by reference.
[0064] An alpha-glucosidase enzyme in certain embodiments herein
may comprise the amino acid sequence of SEQ ID NO:5, 6, 8, 9, 11,
12, 14, 15, 17, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, or that
of DIAZYME RDF ULTRA (DuPont Industrial Biosciences).
Alternatively, an alpha-glucosidase enzyme may comprise an amino
acid sequence that is at least about 90%, 91%, 92%, 93%, 94%, 95%,
96%, 97%, 98%, or 99% identical to SEQ ID NO:5, 6, 8, 9, 11, 12,
14, 15, 17, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, or to the
amino acid sequence of DIAZYME RDF ULTRA, and have hydrolytic
activity toward alpha-1,3 and/or alpha-1,6 glucosyl-glucose
linkages in saccharides. Several of the foregoing sequences, for
example, are mature alpha-glucosidases that lack an N-terminal
signal peptide. For such sequences, it would be understood that an
N-terminal start-methionine would typically be added (if necessary)
(directly or via an intervening heterologous amino acid sequence
such as an epitope) if expressing it without using a signal peptide
(such as with an expression system where the enzyme is expressed
intracellularly and obtained from a cell lysate).
[0065] A transglucosidase (EC 2.4.1.24; 1,4-alpha-glucan
6-alpha-glucosyltransferase) can be used in certain embodiments
herein as an alpha-glucosidase to hydrolyze alpha-1,3 and/or
alpha-1,6 glucosyl-glucose linkages in a saccharide comprising at
least one of these linkages. This class of enzymes has previously
been recognized as D-glucosyltransferase enzymes that catalyze
hydrolytic and transfer reactions on incubation with certain
alpha-D-gluco-oligosaccharides. Transglucosidases as now disclosed
herein also have hydrolytic activity toward alpha-1,3 and alpha-1,6
glucosyl-glucose linkages.
[0066] A transglucosidase enzyme herein may be derived from any
microbial source, such as a bacteria or fungus. Examples of fungal
transglucosidases include, but are not limited to, those of
Trichoderma species (e.g., T. reesei), Aspergillus species and
Neosartorya species (e.g., N. fischeri). Examples of Aspergillus
species from which a transglucosidase may be derived include, but
are not limited to, A. niger, A. awamori, A. oryzae, A. terreus, A.
clavatus, A. fumigatus and A. nidulans. Other examples of
transglucosidase enzymes useful herein are described in Barker et
al. (1953, J. Chem. Soc. 3588-3593); Pazur et al. (1986, Carbohydr.
Res. 149:137-147), Nakamura et al. (1997, J. Biotechnol. 53:75-84),
and U.S. Patent Appl. Publ. No. 2008/0229514, all of which are
incorporated herein by reference. Still other examples of
transglucosidase enzymes useful herein are those that are
thermostable; U.S. Pat. No. 4,689,296, which is incorporated herein
by reference, discloses a process for producing thermostable
transglucosidase. Yet more examples of transglucosidase enzymes
useful herein may be any of those in the GENBANK database (NCBI),
such as accession numbers: D45356 (GID:2645159, A. niger),
BAD06006.1 (GID:4031328, A. awamori), BAA08125.1 (GID:1054565, A.
oryzae), XP_001210809.1 (GID:115492363, A. terreus), XP_001216899.1
(GID:115433524, A. terreus), XP_001271891.1 (GID:121707620, A.
clavatus), XP_751811.1 (GID:70993928, A. fumigatus), XP_659621.1
(GID:67523121, A. nidulans), XP_001266999.1 (GID:119500484, N.
fischeri) and XP_001258585.1 (GID:119473371, N. fischeri), which
are all incorporated herein by reference. Alternatively, a
transglucosidase herein may have an amino acid sequence that is at
least 90% or 95% identical with the amino acid sequence of any of
the foregoing disclosed transglucosidase sequences, and have
hydrolytic activity toward alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkages in saccharides. All of the foregoing
transglucosidases, when used in a hydrolysis reaction herein, are
preferably in a mature form lacking an N-terminal signal
peptide.
[0067] A transglucosidase enzyme in certain embodiments herein may
comprise the amino acid sequence of SEQ ID NO:1 (TG L-2000), which
is an A. niger transglucosidase (U.S. Patent Appl. Publ. No.
2008/0229514). Alternatively, a transglucosidase may comprise an
amino acid sequence that is at least about 90%, 91%, 92%, 93%, 94%,
95%, 96%, 97%, 98%, or 99% identical to SEQ ID NO:1 and have
hydrolytic activity toward alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkages in saccharides. Any of SEQ ID NO:1 or
variants thereof can be produced following the disclosure of U.S.
Patent Appl. Publ. No. 2008/0229514, for example, which is
incorporated herein by reference. SEQ ID NO:1 is a mature
transglucosidase that lacks an N-terminal signal peptide. Since SEQ
ID NO:1 does not begin with a methionine residue, it would be
understood that an N-terminal start-methionine would typically be
added to SEQ ID NO:1 (directly or via an intervening heterologous
amino acid sequence such as an epitope) if expressing it without
using a signal peptide (such as with an expression system where the
enzyme is expressed intracellularly and obtained from a cell
lysate).
[0068] A glucoamylase (EC 3.2.1.3; alpha-1,4-glucan glucohydrolase)
can be used in certain embodiments herein as an alpha-glucosidase.
For example, a glucoamylase can be included with a transglucosidase
in each of the hydrolysis reaction settings/conditions disclosed
herein. In this context, a glucoamylase can be used to hydrolyze
(i) an alpha-1,5 glucosyl-fructose linkage, and/or (ii) an
alpha-1,3 and/or alpha-1,6 glucosyl-glucose linkage present in a
saccharide containing any of these linkage types. This class of
enzymes has previously been recognized as exo-acting enzymes that
catalyze hydrolysis of both alpha-1,4 and alpha-1,6 glycosidic
linkages from non-reducing ends of glucose-containing di-, oligo-
and poly-saccharides. Glucoamylases as now disclosed herein also
have hydrolytic activity toward alpha-1,5 glucosyl-fructose
linkages. In certain embodiments, an alpha-glucosidase is not a
glucoamylase.
[0069] A glucoamylase enzyme herein may be derived from any
microbial source, such as a bacteria or fungus. Examples of
bacterial glucoamylases include, but are not limited to, those of
Bacillus species (e.g., B. alkalophilus, B. amyloliquefaciens, B.
lentus, B. licheniformis, B. stearothermophilus, B. subtilis, B.
thuringiensis) and Streptomyces species (e.g., S. lividans).
Examples of fungal glucoamylases include, but are not limited to,
those of Trichoderma species (e.g., T. reesei, T. longibrachiatum,
T. strictipilis, T. asperellum, T. konilangbra, T. hazianum),
Aspergillus species (e.g., A. niger, A. oryzae, A. terreus, A.
clavatus, A. nidulans, A. kawachi, A. awamon), Rhizopus species
(e.g., R. oryzae, R. niveus), Talaromyces species (e.g., T.
emersonii, T. thermophilus, T. duponti), Mucor species, Hypocrea
species (e.g., H. gelatinosa, H. orientalis, H. vinosa, H.
citrina), Fusarium species (e.g., F. oxysporum, F. roseum, F.
venenatum), Neurospora species (e.g., N. crassa), Humicola species
(e.g., H. grisea, H. insolens, H. lanuginose), Penicillium species
(e.g., P. notatum, P. chrysogenum) and Saccharomycopsis species
(e.g., S. fibuligera).
[0070] Examples of these bacterial and fungal glucoamylases for use
herein are disclosed in U.S. Pat. Appl. Publ. No. 2013/0102035,
which is incorporated herein by reference. Other examples of
glucoamylase enzymes useful herein are described in Svensson et al.
(1983, Carlsberg Res. Commun. 48:529-544), Boel et al. (1984, EMBO
J. 3:1097-1102); Hayashida et al. (1989, Agric. Biol. Chem.
53:923-929); U.S. Pat. No. 5,024,941, U.S. Pat. No. 4,794,175, U.S.
Pat. No. 4,247,637, U.S. Pat. No. 6,255,084, U.S. Pat. No.
6,620,924, Ashikari et al. (1986, Agric. Biol. Chem. 50:957-964),
Ashikari et al. (1989, Appl. Microbiol. Biotechnol. 32:129-133),
U.S. Pat. No. 4,863,864; U.S. Pat. No. 4,618,579, Houghton-Larsen
et al. (2003, Appl. Microbiol. Biotechnol. 62:210-217) and U.S.
Pat. No. 7,413,887, all of which are incorporated herein by
reference. Alternatively, a glucoamylase herein may have an amino
acid sequence that is at least 90% or 95% identical with the amino
acid sequence of any of the foregoing disclosed glucoamylase
sequences, and have hydrolytic activity toward (i) alpha-1,5
glucosyl-fructose linkages and/or (ii) alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkages. All of the foregoing glucoamylases, when
used in a hydrolysis reaction herein, are preferably in a mature
form lacking an N-terminal signal peptide. Commercially available
glucoamylases useful herein include OPTIDEX L-400, GC 147, GC 321,
G ZYME G990 4X, OPTIMAX 7525, DEXTROZYME, DISTILLASE and GLUCZYME,
for example.
[0071] A glucoamylase enzyme in certain embodiments herein may
comprise the amino acid sequence of SEQ ID NO:2 (GC 321), which is
a T. reesei glucoamylase. Alternatively, a glucoamylase may
comprise an amino acid sequence that is at least about 90%, 91%,
92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identical to SEQ ID NO:2
and have hydrolytic activity toward (i) alpha-1,5 glucosyl-fructose
linkages and/or (ii) alpha-1,3 and/or alpha-1,6 glucosyl-glucose
linkages. Any of SEQ ID NO:2 or variants thereof can be produced
following the disclosures of U.S. Pat. No. 7,413,887 or U.S. Pat.
Appl. Publ. No. 2013/0102035, for example, which are incorporated
herein by reference. SEQ ID NO:2 is a mature glucoamylase that
lacks an N-terminal signal peptide. Since SEQ ID NO:2 does not
begin with a methionine residue, it would be understood that an
N-terminal start-methionine would typically be added to SEQ ID NO:2
(directly or via an intervening heterologous amino acid sequence
such as an epitope) if expressing it without using a signal peptide
(such as with an expression system where the enzyme is expressed
intracellularly and obtained from a cell lysate).
[0072] An alpha-glucosidase enzyme herein such as a
transglucosidase or glucoamylase may be from a commercial source
(e.g., DuPont Industrial Biosciences/Genencor, USA; Megazyme
International, Ireland; Amano Enzyme Inc., Japan). Alternatively,
such an enzyme may be produced by any means known in the art, such
as described in U.S. Pat. Appl. Publ. No. 2008/0229514, U.S. Pat.
No. 7,413,887 or U.S. Pat. Appl. Publ. No. 2013/0102035, which are
incorporated herein by reference. For example, an alpha-glucosidase
may be produced recombinantly in a heterologous expression system,
such as a microbial or fungal heterologous expression system.
Examples of heterologous expression systems include bacterial
(e.g., E. coli, Bacillus sp.) and eukaryotic systems. Eukaryotic
systems can employ yeast (e.g., Pichia sp., Saccharomyces sp.) or
fungal (e.g., Trichoderma sp. such as T. reesei; Aspergillus
species such as A. niger) expression systems, for example. The
transglucosidase of SEQ ID NO:1 and glucoamylase of SEQ ID NO:2,
and variants thereof, can be expressed in a T. reesei host, for
example.
[0073] An alpha-glucosidase enzyme when used in a hydrolysis
reaction herein is preferably in a mature form lacking an
N-terminal signal peptide. An expression system for producing a
mature alpha-glucosidase enzyme herein may employ an
enzyme-encoding polynucleotide that further comprises sequence
encoding an N-terminal signal peptide to direct extra-cellular
secretion. The signal peptide in such embodiments is cleaved from
the enzyme during the secretion process. The signal peptide may
either be native or heterologous to the transglucosidase or
glucoamylase. Alternatively, an alpha-glucosidase enzyme in a
mature form can be provided by expressing it without using a signal
peptide, such as with an expression system where the enzyme is
expressed intracellularly and obtained from a cell lysate. In
either scenario (secretion or intracellularly expressed), a
heterologous amino acid sequence such as an epitope can optionally
be included at the N-terminus of the alpha-glucosidase.
[0074] An alpha-glucosidase enzyme in certain embodiments may be
provided in a hydrolysis reaction herein by direct use of a cell
that expresses the enzyme(s). In other words, an alpha-glucosidase
that is contacted with a saccharide can be present by virtue of its
expression from a cell placed in the suitable conditions for
hydrolysis. Such a cell could thus be used in place of adding an
isolated alpha-glucosidase preparation to the hydrolysis reaction.
A cell for this purpose can be a bacterial, yeast, or fungal cell,
for example. Examples of yeast include those from the genera
Saccharomyces (e.g., S. cerevisiae), Kluyveromyces, Candida,
Pichia, Schizosaccharomyces, Hansenula, Kloeckera, and
Schwanniomyces. Other expression systems useful herein are
disclosed in U.S. Patent. Appl. Publ. No. 2013/0323822, which is
incorporated herein by reference.
[0075] A saccharide herein comprises at least one alpha-1,3 or
alpha-1,6 glucosyl-glucose linkage. Thus, depending on the length
of the saccharide, it may contain 1, 2, 3, 4, 5, 6, 7, or 8
alpha-1,5 glucosyl-glucose linkages, for example. A saccharide
preferably contains 1, 2, or 3 linkages of this type. A saccharide
in other preferred embodiments only has alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkages. In other embodiments, a saccharide can
have one or more alpha-1,5 glucosyl-fructose linkages.
[0076] Since a saccharide herein comprises at least one alpha-1,3
or alpha-1,6 glucosyl-glucose linkage, the saccharide comprises at
least two glucose units. In certain embodiments, a saccharide
herein comprises only glucose units, or both glucose and fructose
units. Such a composition may characterize the disaccharide and
oligosaccharide byproducts of a glucan synthesis reaction.
Alternatively, a saccharide herein may contain other
monosaccharides in addition to glucose and fructose, such as
galactose, ribose and xylose.
[0077] A saccharide hydrolyzed in certain embodiments of the
disclosed invention can be an oligosaccharide. An oligosaccharide
herein can have, for example, 2, 3, 4, 5, 6, 7, 8, or 9
monosaccharide units. As would be understood in the art, an
oligosaccharide herein can be referenced with respect to its degree
of polymerization (DP) number, which specifies the number of
monomeric units in the oligosaccharide. A DP3 oligosaccharide has 3
monomeric units, for example. Thus, the oligosaccharide can be a
DP3, DP4, DP5, DP6, DP7, DP8, or DP9 oligosaccharide, for example.
The DP of a saccharide in certain embodiments is 3 to 7 (i.e., DP
3-7).
[0078] An oligosaccharide herein with 3 or more monosaccharide
units, for example, can comprise other linkages in addition to at
least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage. For
example, there may also be one or more alpha-1,5 glucosyl-fructose
linkages in the oligosaccharide, which are also susceptible to
hydrolysis by alpha-glucosidases as shown herein.
[0079] An oligosaccharide in certain embodiments comprises only
glucose monomers linked by alpha-1,3 and/or alpha-1,6 glycosidic
linkages. Thus, such oligosaccharides comprise only alpha-1,3
glucosyl-glucose and/or alpha-1,6 glucosyl-glucose linkages.
Examples of such an oligosaccharide contain only alpha-1,3 linkages
or alpha-1,6 linkages. An oligosaccharide can comprise at least
85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%,
98%, or 99% glucosyl-glucose linkages in certain embodiments. In
other embodiments, there can be about 75-85% alpha-1,3
glucosyl-glucose linkages and about 15-25% alpha-1,6
glucosyl-glucose linkages in oligosaccharides herein.
Alternatively, oligosaccharides herein can comprise any percentage
(any integer value between 1% and 99%) of alpha-1,3
glucosyl-glucose linkages and any percentage (any integer value
between 1% and 99%) of alpha-1,6 glucosyl-glucose linkages, just so
long that the total of these percentages is not greater than 100%.
Any of these oligosaccharides can be in a fraction from a glucan
synthesis reaction that produces (i) an insoluble alpha-glucan
(e.g., poly alpha-1,3-glucan), or (ii) a soluble alpha-glucan
product, for example. This linkage content can characterize (i)
each oligosaccharide individually, or (ii) a group of
oligosaccharides (i.e., average linkage content). Oligosaccharides
comprising only glucose monomers linked by alpha-1,3 and/or
alpha-1,6 glycosidic linkages can be DP2-DP7, or DP3-DP7, for
example. It should be understood that the exact distribution of
linkages in oligosaccharides can vary depending on the conditions
of the glucan synthesis reaction (e.g., gtf enzyme) producing
oligosaccharide byproducts. It should further be understood that
the exact linkage distribution is not critical to the presently
disclosed methods.
[0080] The Examples herein demonstrate that alpha-glucosidases
(e.g., transglucosidase and glucoamylase enzymes) can hydrolyze
both (i) leucrose, which comprises an alpha-1,5 glucosyl-fructose
linkage, and (ii) oligosaccharides comprising only alpha-1,3
glucosyl-glucose and/or alpha-1,6 glucosyl-glucose linkages.
Therefore, an alpha-glucosidase can be used, for example, in a
reaction for hydrolyzing alpha-1,5 glucosyl-fructose linkages,
alpha-1,3 glucosyl-glucose linkages and/or alpha-1,6
glucosyl-glucose linkages.
[0081] At least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage
in a saccharide herein can be hydrolyzed by an alpha-glucosidase
herein. Alternatively, it is believed that 2, 3, 4, 5, or more of
such linkages in a saccharide can be hydrolyzed by an
alpha-glucosidase, for example. Hydrolysis of at least one
alpha-1,3 or alpha-1,6 glucosyl-glucose linkage can occur at the
non-reducing-end of a saccharide in certain embodiments.
[0082] The amount of a saccharide is reduced in the disclosed
hydrolysis method compared to the amount of the saccharide that was
present prior to the contacting step. This reduction results from
hydrolytic cleavage of at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage in the saccharide. The amount (e.g.,
concentration) of a saccharide after the contacting step in a
hydrolysis method herein can be less than about 1%, 2%, 3%, 4%, 5%,
10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, or 90% (or any integer
value between 1% and 90%) of the amount of the saccharide that was
present prior to the contacting step (prior to contacting
alpha-glucosidase with a saccharide under suitable conditions).
[0083] The amount of a saccharide is reduced in the disclosed
hydrolysis method compared to the amount of the saccharide that was
present prior to the contacting step. It would be understood that
such a comparison can be made in any number of ways. For example,
the saccharide concentration can be measured both before and after
performing the hydrolysis method. Alternatively, the comparison can
be made with respect to a control reaction having the same
conditions, except that an alpha-glucosidase as presently disclosed
is not added to the control reaction.
[0084] An alpha-glucosidase in certain embodiments herein may be
immobilized. The enzyme may be immobilized using any method and/or
means known in the art, such as those disclosed in U.S. Pat. Nos.
5,541,097 and 4,713,333, both of which are incorporated herein by
reference. For example, one or more enzymes can be immobilized by
contacting the enzyme(s) with a solution of an amine-reactive
material (e.g., glutaraldehyde) to form an adduct (e.g.,
enzyme-glutaraldehyde adduct), after which the adduct is bonded to
a solid carrier that has been treated with a polyamine (e.g., a
polyethylenimine such as EPOMIN P-1050).
[0085] A solid carrier (solid support) to which an
alpha-glucosidase enzyme can be immobilized in certain embodiments
can be an inorganic or organic material. Such materials include,
for example, gamma-alumina, titania, activated granular carbon,
granular diatomaceous earth, glass beads, porous glass,
pumice-stone, silica gel, metal oxide and aluminum oxide.
[0086] A polyamine can be used to treat a solid carrier such that
subsequent exposure of the solid carrier to an adduct comprising an
enzyme and amine-reactive material leads to attachment of the
enzyme to the solid carrier. Examples of polyamines useful herein
include polyethylenediamine, a polyethylenimine (e.g.,
polydiethylenetriamine, polytriethylenetetramine,
polypentaethylenehexamine, polyhexamethylenediamine),
polymethylenedicyclohexylamine, polymethylenedianiline,
polytetraethylenepentamine, polyphenylenediamine and blends of two
or more of these polyamine compounds. Preferred polyamines are
water-soluble and/or have a molecular weight of about from 500 to
100,000 Daltons. A polyethylenimine such as EPOMIN P-1050 can be
used in certain embodiments.
[0087] An amine-reactive material useful for preparing an adduct
comprising an enzyme herein can be, for example, an aldehyde,
organic halide, anhydride, azo compound, isothiocyanate, and/or
isocyanate. Examples of these amine-reactive materials include
glutaraldehyde, succindialdehyde, terephthaldehyde,
bis-diazobenzidine-2,2'-disulfonic acid,
4,4'-difluoro-3,3'-dinitrodiphenylsulfone,
diphenyl-4,4'-dithiocyanate-2,2'-disulfonic acid,
3-methoxydiphenylmethane-4,4'-diisocyanate,
toluene-2-isocyanate-4-isothiocyanate,
toluene-2,-4-diisothiocyanate, diazobenzidine,
diazobenzidine-3,3'-dianisidine, N,N'-hexamethylene
bisiodoacetamide, hexamethylene diisocyanate, cyanuric chloride,
and/or 1,5-difluoro-2,4-dinitrobenzene. Preferably, the
amine-reactive material is an aldehyde such as glutaraldehyde.
[0088] An alpha-glucosidase enzyme adducted with an amine-reactive
compound can be contacted with a polyamine-treated solid carrier,
thereby immobilizing the enzyme onto the solid carrier. An
immobilized enzyme herein can be employed in various reactor
systems, such as in a column (e.g., packed column) or stirred tank
reactor, for performing hydrolysis reaction as disclosed
herein.
[0089] Suitable conditions for contacting a saccharide herein with
an alpha-glucosidase (e.g., transglucosidase) are those conditions
that support the hydrolysis of one or more alpha-1,3 or alpha-1,6
glucosyl-glucose linkages in the saccharide by the
alpha-glucosidase. Examples of suitable conditions are disclosed in
the below Examples. Conditions (e.g., temperature, pH, time) for
contacting an alpha-glucosidase with a sugar substrate are also
disclosed in U.S. Pat. Appl. Publ. No. 2008/0229514, U.S. Pat. No.
7,413,887 and U.S. Pat. Appl. Publ. No. 2013/0102035 (all of which
are incorporated herein by reference), and may also be applicable
to the disclosed hydrolysis method.
[0090] The disaccharides and oligosaccharides in the disclosed
hydrolysis method are typically soluble in water or an aqueous
solution. Thus, contacting a saccharide herein with an
alpha-glucosidase is preferably performed under suitable conditions
that are aqueous, in which the saccharide is dissolved. Aqueous
conditions can characterize a solution or mixture comprising at
least about 20 wt % water. Alternatively, aqueous conditions herein
are at least about 20, 30, 40, 50, 60, 70, 80, 85, 90, or 95 wt %
water (or any integer value between 20 and 95 wt %), for example.
Aqueous conditions can further comprise a buffer, for example, such
as an acidic, neutral, or alkaline buffer, at a suitable
concentration and selected based on the pH range provided by the
buffer. Examples of buffers/buffering agents include citrate,
acetate (e.g., sodium acetate), KH.sub.2PO.sub.4, MOPS, CHES,
borate, sodium carbonate, and sodium bicarbonate.
[0091] The pH of a hydrolysis reaction herein can be about 3.0 to
9.0, for example. Hydrolysis reaction pH can be, for example, about
3.0, 3.5, 4.0, 4.5, 5.0, 5.5, 6.0, 6.5, 7.0, 7.5, 8.0, 8.5, or 9.0.
Alternatively, the pH can be about 4-5. Techniques for setting pH
include the use of buffers, alkalis, and/or acids, for example, and
are well known in the art.
[0092] The temperature of a hydrolysis reaction herein can be about
20.degree. C. to about 80.degree. C., for example. Hydrolysis
reaction temperature can be, for example, about 20, 30, 40, 50, 60,
70, or 80.degree. C. (or any integer value between 20 and
80.degree. C.). A hydrolysis temperature of about 60.degree. C.,
65.degree. C., or 60-65.degree. C. is preferred in certain
embodiments.
[0093] A hydrolysis reaction herein can be performed for a period
of at least about 10 minutes to about 90 hours, for example. The
time of a hydrolysis reaction can be, for example, at least about
0.5, 1, 2, 3, 4, 8, 12, 16, 20, 24, 30, 36, 42, 48, 54, 60, 66, 72,
78, 84, or 90 hours (or any integer value between 0.5 and 72
hours). In certain embodiments, a hydrolysis reaction can be
performed in less than 4 hours (e.g., 0.5-4 hours) for example. The
time period required to achieve a desired level of hydrolysis will
vary on the exact conditions used, and would be understood by one
skilled in the art. For example, increasing the amount of enzyme
added to a reaction or immobilized on a solid support used in a
reaction will reduce the contact time.
[0094] One or more of alpha-glucosidase enzymes herein may be used
in a hydrolysis reaction in certain embodiments. Both a
transglucosidase and glucoamylase can be used in a reaction, for
example. The amount of an alpha-glucosidase in a hydrolysis
reaction herein can be plus/minus 10% to 20% (or 5% to 10%) from
any of the amounts used in the Examples below (e.g., Example 2),
for example. Alternatively, about 0.1-0.5 vol % or 0.1-1.0 vol % of
alpha-glucosidase can be used in a hydrolysis reaction.
Alternatively still, an alpha-glucosidase herein can be used at
about, or at least about, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12,
13, 14, or 15 ppm in a hydrolysis reaction. A transglucosidase unit
(TGU) can be defined as the amount of a transglucosidase enzyme
that will produce one micromole of panose per minute under the
conditions of the following assay, for example. Transglucosidase
activity can be assayed as follows, for example: a transglucosidase
is brought up in 100 mM sodium acetate buffer, pH 4.5, containing 4
mM para-nitrophenyl-alpha-glucoside and 1 mg/ml bovine serum
albumin (BSA). After 30 min incubation at 30.degree. C., the
reaction is terminated by the addition of an equal volume 1 M
sodium carbonate and OD.sub.405 is recorded. A glucoamylase unit
(GAU) can be defined, for example, as the amount of glucoamylase
enzyme that will produce 1 g of reducing sugar calculated as
glucose per hour from a soluble starch substrate (4% DS [degree of
substitution]) at pH 4.2 and 60.degree. C.
[0095] The initial concentration of a saccharide in a hydrolysis
reaction in certain embodiments of the disclosed invention can be
about 1 wt % to 50 wt %, for example. For example, the
concentration of leucrose can be about 5, 10, 15, 20, 25, 30, 35,
or 40 wt % (or any integer value between 5 and 40 wt %). As another
example, the concentration of one or more oligosaccharides (e.g.,
DP2, DP3, DP4, DP2-DP7, DP3-DP7) in a hydrolysis reaction herein
can be about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15
wt %. Those skilled in the art would recognize that the
concentration of total sugars (which includes disaccharides and
oligosaccharides) can have an impact on the activity of
alpha-glucosidase enzymes; preferred concentrations of total sugars
in a hydrolysis reaction to maximize enzyme activity can be less
than 50 wt % dry solids (DS), with a most preferred concentration
of 20-35 wt % DS in some aspects.
[0096] Suitable conditions in certain embodiments for contacting a
saccharide with an alpha-glucosidase herein can comprise (i) a
glucan synthesis reaction, or (ii) a fraction obtained from a
glucan synthesis reaction, where the saccharide is a byproduct of
the glucan synthesis reaction. In other words, a hydrolysis
reaction herein may be conducted in the context of a glucan
synthesis reaction or a fraction of a glucan synthesis reaction,
though it is typically conducted in the latter. A glucan synthesis
reaction herein can produce one or more insoluble and/or soluble
alpha-glucan products, for example. Thus, a glucan synthesis
reaction can be characterized in some embodiments herein as an
"alpha-glucan synthesis reaction".
[0097] A glucan synthesis reaction generally refers to a solution
comprising at least sucrose, water and one active
glucosyltransferase enzyme, and optionally other components. Other
components that can be in a glucan synthesis reaction include
fructose, glucose, leucrose, soluble oligosaccharides (e.g.,
DP2-DP7), and soluble glucan product(s). Also, one or more
alpha-glucanohydrolase enzymes can be comprised in a glucan
synthesis reaction in some aspects. It would be understood that
certain glucan products, such as poly alpha-1,3-glucan with a DP of
at least 8 or 9, may be water-insoluble and thus are not dissolved
in a glucan synthesis reaction, but rather may be present out of
solution. Thus, a glucan produced by glucan synthesis reaction
herein can be insoluble. An alpha-glucosidase enzyme herein can be
added to a glucan synthesis reaction at any stage thereof, such as
during initial preparation of the reaction or when the reaction is
near (e.g., 80 to 90% complete) or at completion, where the latter
two time points are preferred.
[0098] A glucan synthesis reaction herein may be one that, in
addition to producing a glucan product, produces byproducts such as
leucrose and/or soluble oligosaccharides. A glucan in some aspects
is a poly alpha-glucan. Thus, a glucan synthesis reaction herein
can be for producing poly alpha-1,3-glucan or mutan, for example,
which are typically co-produced with at least leucrose and/or
oligosaccharide byproducts in a glucan synthesis reaction.
[0099] A glucan synthesis reaction in certain embodiments comprises
a glucosyltransferase enzyme that produces a poly alpha-glucan such
as poly alpha-1,3-glucan. Examples of such glucosyltransferase
enzymes useful herein are disclosed in U.S. Pat. No. 7,000,000, and
U.S. Pat. Appl. Publ. Nos. 201310244288, 2013/0244287 and
2014/0087431 (all of which are incorporated herein by
reference.
[0100] A glucosyltransferase enzyme herein may be derived from any
microbial source, such as a bacteria or fungus. Examples of
bacterial glucosyltransferase enzymes are those derived from a
Streptococcus species, Leuconostoc species or Lactobacillus
species. Examples of Streptococcus species include S. salivarius,
S. sobrinus, S. dentirousetti, S. downei, S. mutans, S. oralis, S.
gallolyticus and S. sanguinis. Examples of Leuconostoc species
include L. mesenteroides, L. amelibiosum, L. argentinum, L.
camosum, L. citreum, L. cremoris, L. dextranicum and L. fructosum.
Examples of Lactobacillus species include L. acidophilus, L.
delbrueckii, L. helveticus, L. salivarius, L. casei, L. curvatus,
L. plantarum, L. sakei, L. brevis, L. buchneri, L. fermentum and L.
reuteri.
[0101] A glucosyltransferase enzyme herein can be
primer-independent or primer-dependent. Primer-independent
glucosyltransferase enzymes do not require the presence of a primer
to perform glucan synthesis. A primer-dependent glucosyltransferase
enzyme requires the presence of an initiating molecule in the
reaction solution to act as a primer for the enzyme during glucan
polymer synthesis. The term "primer" as used herein refers to any
molecule that can act as the initiator for a glucosyltransferase
enzyme. Primers that can be used in certain embodiments include
dextran and other carbohydrate-based primers, such as hydrolyzed
glucan, for example. U.S. Appl. Publ. No. 2013/0244287, which is
incorporated herein by reference, discloses preparation of
hydrolyzed glucan using poly alpha-1,3-glucan as the starting
material. Dextran for use as a primer can be dextran T10 (i.e.,
dextran having a molecular weight of 10 kD), for example.
[0102] A glucosyltransferase enzyme for a glucan synthesis reaction
herein may be produced by any means known in the art. For example,
a glucosyltransferase enzyme may be produced recombinantly in a
heterologous expression system, such as a microbial heterologous
expression system. Examples of heterologous expression systems
include bacterial (e.g., E. coli such as TOP10 or MG1655; Bacillus
sp.) and eukaryotic (e.g., yeasts such as Pichia sp. and
Saccharomyces sp.) expression systems.
[0103] A glucosyltransferase enzyme described herein may be used in
any purification state (e.g., pure or non-pure). For example, a
glucosyltransferase enzyme may be purified and/or isolated prior to
its use. Examples of glucosyltransferase enzymes that are non-pure
include those in the form of a cell lysate. A cell lysate or
extract may be prepared from a bacteria (e.g., E. coli) used to
heterologously express the enzyme. For example, the bacteria may be
subjected to disruption using a French pressure cell. In
alternative embodiments, bacteria may be homogenized with a
homogenizer (e.g., APV, Rannie, Gaulin). A glucosyltransferase
enzyme is typically soluble in these types of preparations. A
bacterial cell lysate, extract, or homogenate herein may be used at
about 0.15-0.3% (v/v), for example, in a reaction solution for
producing a poly alpha-glucan such as poly alpha-1,3-glucan from
sucrose.
[0104] The temperature of a glucan synthesis reaction herein can be
controlled, if desired. In certain embodiments, the temperature of
the reaction is between about 5.degree. C. to about 50.degree. C.
The temperature in certain other embodiments is between about
20.degree. C. to about 40.degree. C.
[0105] The initial concentration of sucrose in a glucan synthesis
reaction herein can be about 20 g/L to about 400 g/L, for example.
Alternatively, the initial concentration of sucrose can be about 75
g/L to about 175 g/L, or from about 50 g/L to about 150 g/L.
Alternatively still, the initial concentration of sucrose can be
about 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150, or 160
g/L (or any integer value between 40 and 160 g/L), for example.
"Initial concentration of sucrose" refers to the sucrose
concentration in a gtf reaction solution just after all the
reaction solution components have been added (at least water,
sucrose, gtf enzyme).
[0106] Sucrose used in a glucan synthesis reaction herein can be
highly pure (>99.5%) or be of any other purity or grade. For
example, sucrose can have a purity of at least 99.0%, or can be
reagent grade sucrose. As another example, incompletely refined
sucrose can be used. Incompletely refined sucrose herein refers to
sucrose that has not been processed to white refined sucrose. Thus,
incompletely refined sucrose can be completely unrefined or
partially refined. Examples of unrefined sucrose are "raw sucrose"
("raw sugar") and solutions thereof. Examples of partially refined
sucrose have not gone through one, two, three, or more
crystallization steps. The ICUMSA (International Commission for
Uniform Methods of Sugar Analysis) of incompletely refined sucrose
herein can be greater than 150, for example. Sucrose herein may be
derived from any renewable sugar source such as sugar cane, sugar
beets, cassava, sweet sorghum, or corn. Suitable forms of sucrose
useful herein are crystalline form or non-crystalline form (e.g.,
syrup, cane juice, beet juice), for example. Additional suitable
forms of incompletely refined sucrose are disclosed in U.S. Appl.
No. 61/969,958.
[0107] Methods of determining ICUMSA values for sucrose are well
known in the art and disclosed by the International Commission for
Uniform Methods of Sugar Analysis in ICUMSA Methods of Sugar
Analysis: Official and Tentative Methods Recommended by the
International Commission for Uniform Methods of Sugar Analysis
(ICUMSA) (Ed. H. C. S. de Whalley, Elsevier Pub. Co., 1964), for
example, which is incorporated herein by reference. ICUMSA can be
measured, for example, by ICUMSA Method GS1/3-7 as described by R.
J. McCowage, R. M. Urquhart and M. L. Burge (Determination of the
Solution Colour of Raw Sugars.
[0108] Brown Sugars and Coloured Syrups at pH 7.0--Official, Verlag
Dr Albert Bartens, 2011 revision), which is incorporated herein by
reference.
[0109] The pH of a glucan synthesis reaction in certain embodiments
can be between about 4.0 to about 8.0. Alternatively, the pH can be
about 4.0, 4.5, 5.0, 5.5, 6.0, 6.5, 7.0, 7.5, or 8.0. The pH can be
adjusted or controlled by the addition or incorporation of a
suitable buffer, including but not limited to: phosphate, tris,
citrate, or a combination thereof. Buffer concentration in a glucan
synthesis reaction can be from 0 mM to about 100 mM, or about 10,
20, or 50 mM, for example.
[0110] Poly alpha-1,3-glucan produced in a glucan synthesis
reaction herein may have at least about 50%, 60%, 70%, 80%, 90%,
95%, 96%, 97%, 98%, 99%, or 100% (or any integer value between 50%
and 100%) glycosidic linkages that are alpha-1,3. In such
embodiments, accordingly, the poly alpha-1,3-glucan has less than
about 50%, 40%, 30%, 20%, 10%, 5%, 4%, 3%, 2%, 1%, or 0% (or any
integer value between 0% and 50%) of glycosidic linkages that are
not alpha-1,3.
[0111] Poly alpha-1,3-glucan herein preferably has a backbone that
is linear/unbranched. In certain embodiments, the poly
alpha-1,3-glucan has no branch points or less than about 10%, 9%,
8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1% branch points as a percent of the
glycosidic linkages in the polymer. Examples of branch points
include alpha-1,6 branch points.
[0112] The molecular weight of poly alpha-1,3-glucan produced in a
glucan synthesis reaction herein can be measured as number-average
molecular weight (M.sub.n) or weight-average molecular weight
(M.sub.w). Alternatively, molecular weight can be measured in
Daltons or grams/mole. It may also be useful to refer to the
DP.sub.w (weight average degree of polymerization) or DP.sub.n
(number average degree of polymerization) of the poly
alpha-1,3-glucan polymer.
[0113] The M.sub.n or M.sub.w of poly alpha-1,3-glucan herein may
be at least about 1000. Alternatively, the M.sub.n or M.sub.w can
be at least about 1000 to about 600000 (or any integer value
between 1000 and 600000), for example. Alternatively still, poly
alpha-1,3-glucan in can have a molecular weight in DP.sub.n or
DP.sub.w of at least about 100, or of at least about 100 to 1000
(or any integer value between 100 and 1000).
[0114] A fraction of a glucan synthesis reaction may constitute
suitable conditions for contacting a saccharide with an
alpha-glucosidase as presently disclosed. A fraction can be a
portion of, or all of, the liquid solution from a glucan synthesis
reaction. Typically, a fraction has been separated from soluble or
insoluble glucan product(s) synthesized in the reaction. For
example, a fraction can be separated from one or more glucan
products that are insoluble in water (e.g., poly alpha-1,3-glucan)
which fall out of solution during their synthesis. A fraction in
certain preferred embodiments of the present disclosure is from a
poly alpha-1,3-glucan synthesis reaction.
[0115] The volume of a fraction (before optionally diluting or
concentrating the fraction, see below) in certain embodiments can
be at least about 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, or 90%
(or any integer value between 10% and 90%) of the volume of the
glucan synthesis reaction from which it is obtained. Typically, in
glucan synthesis reactions producing an insoluble glucan (e.g.,
poly alpha-1,3-glucan), the fraction will be a portion of (not all
of) the liquid solution component of the reaction. A fraction can
be obtained at any stage of a glucan synthesis reaction, but is
preferably obtained near (e.g., greater than 80 or 90% complete) or
after completion of the reaction.
[0116] Examples of a fraction of a glucan synthesis reaction in
certain embodiments include filtrates and supernatants. Thus, in
those embodiments in which an insoluble glucan product is
synthesized, a fraction herein can be obtained (separated) from a
glucan synthesis reaction using a funnel, filter (e.g., press
filter), centrifuge, or any other method or equipment known in the
art that allows removal of some or all liquids from solids.
Filtration can be by gravity, vacuum, or press filtration, for
example. Filtration preferably removes all or most of an insoluble
glucan; any filter material (e.g., filter paper) with an average
pore size (e.g., .about.40-50 micron) sufficient to remove solids
from liquids can be used. A fraction typically retains all or most
of its dissolved components, such as byproducts of the glucan
synthesis reaction.
[0117] A fraction herein can optionally be diluted or concentrated,
if desired. Concentration of a fraction can be performed using any
other method or equipment known in the art suitable for
concentrating a solution. For example, a fraction can be
concentrated by evaporation, such as with a rotary evaporator
(e.g., set at a temperature of about 40-50.degree. C.). A fraction
in some aspects herein can be concentrated down to a volume that is
about 75%, 80%, 85%, 90%, or 95% of the original fraction volume. A
concentrated fraction (e.g., concentrated filtrate) can optionally
be referred to as a syrup.
[0118] A fraction in some aspects can comprise water that replaces
the water that was present in the composition from which the
fraction was obtained. For example, saccharide byproduct(s) from a
glucan synthesis reaction can be separated in certain
chromatographic methods in which the original solvent is replaced
with another solvent (e.g., saccharide byproducts that are bound to
a column [thus removed from the original solvent] can be eluted
into a new solvent).
[0119] A fraction in some aspects may be treated in a manner to
have any of the suitable conditions (e.g., temperature, pH and
time) disclosed above for contacting a saccharide with an
alpha-glucosidase. For example, a fraction can be modified to have
a pH of about 4 to 5 before an alpha-glucosidase is added to the
fraction. As another example, the temperature of a hydrolysis
reaction with a fraction can be about 55-65.degree. C. (e.g., about
60.degree. C.). A fraction that has been concentrated down to a
syrup can be used in a hydrolysis reaction in yet another
example.
[0120] A fraction in certain preferred embodiments herein is from a
poly alpha-1,3-glucan synthesis reaction; such a fraction is
preferably a filtrate. A fraction of a poly alpha-1,3-glucan
synthesis reaction herein comprises at least water, fructose and
one or more types of saccharide (leucrose and/or oligosaccharides
such as DP2-DP7). Other components that may be in this type of
fraction include sucrose (i.e., residual sucrose not consumed in
the gtf reaction), one or more gtf enzymes, glucose, buffer, salts,
FermaSure.RTM., borates, sodium hydroxide, hydrochloric acid, cell
lysate components, proteins and/or nucleic acids, for example.
Minimally, the components of a fraction from a poly
alpha-1,3-glucan synthesis reaction include water, fructose,
glucose, one or more types of saccharide (leucrose and/or
oligosaccharides such as DP2-DP7), and optionally sucrose, for
example. It would be understood that the composition of a fraction
depends, in part, on the conditions of the glucan synthesis
reaction from which the fraction is obtained. In those fractions
containing one or more gtf enzymes, it is preferable that such one
or more gtf enzymes are deactivated (e.g., heat-deactivated) before
using the fraction in a hydrolysis reaction herein.
[0121] It should be understood that the exact distribution of sugar
byproducts produced via polymerization of sucrose in a glucan
synthesis reaction can vary based on the reaction conditions and
gtf enzyme used, especially on temperature and sucrose
concentration. It should also be understood that the exact
composition of sugars in a fraction of a glucan synthesis reaction
is not critical to the disclosed hydrolysis process. Generally, as
the amount of sucrose is increased, the selectivity of the reaction
towards both leucrose and oligosaccharides will increase.
Conversely, as the temperature increases, the selectivity of the
reaction towards leucrose tends to decrease, while the selectivity
towards oligosaccharides is largely unaffected. It should also be
understood that the ratio of sugars to water, i.e., wt % dry solids
(DS), which is calculated by dividing the mass of sugar to total
solution weight, can be adjusted either by evaporating water,
preferably at temperatures below 50.degree. C. under vacuum, or
addition of water, without significant impact to the relative
distribution of sugars in a fraction of a glucan synthesis
reaction. It is also possible to increase the percentage of sucrose
in a fraction by stopping the gtf reaction before complete
conversion (to glucan) is achieved, either by reducing the pH below
the active range for the gtf enzyme or by thermal deactivation of
the gtf enzyme.
[0122] In certain embodiments, a glucan synthesis reaction herein
can produce one or more soluble alpha-glucan products. A soluble
alpha-glucan product ("soluble fiber", alternatively) can be (i) a
direct product of a glucosyltransferase, or (ii) a product of the
concerted action of both a glucosyltransferase and an
alpha-glucanohydrolase capable of hydrolyzing glucan polymers
having one or more alpha-1,3-glycosidic linkages or one or more
alpha-1,6-glycosidic linkages.
[0123] A soluble alpha-glucan herein can comprise, for example:
[0124] a) at least 75% alpha-1,3-glycosidic linkages;
[0125] b) less than 25% alpha-1,6-glycosidic linkages;
[0126] c) less than 10% alpha-1,3,6-glycosidic linkages;
[0127] d) an M.sub.w of less than 5000 Daltons;
[0128] e) a viscosity of less than 0.25 Pascal second (Pas) at 12
wt % in water at 20.degree. C.;
[0129] f) a dextrose equivalence (DE) in the range of 4 to 40;
[0130] g) a digestibility of less than 10% as measured by the
Association of Analytical Communities (AOAC) method 2009.01;
[0131] h) a solubility of at least 20% (w/w) in pH 7 water at
25.degree. C.; and
[0132] i) a polydispersity index (PDI) of less than 5.
[0133] Such a soluble alpha-glucan can be produced as disclosed in
U.S. Appl. No. 62/004,290.
[0134] As an example, a soluble alpha-glucan fiber composition can
comprise at least 75%, preferably at least 80%, more preferably at
least 85%, even more preferably at least 90%, and most preferably
at least 95% alpha-(1,3) glycosidic linkages.
[0135] As another example, in addition to the alpha-(1,3)
glycosidic linkage embodiments described above, a soluble
alpha-glucan fiber composition can further comprise less than 25%,
preferably less than 10%, more preferably 5% or less, and even more
preferably less than 1% alpha-(1,6) glycosidic linkages.
[0136] As another example, in addition to the alpha-(1,3) and
alpha-(1,6) glycosidic linkage content embodiments described above,
a soluble alpha-glucan fiber composition can further comprise less
than 10%, preferably less than 5%, and most preferably less than
2.5% alpha-(1,3,6) glycosidic linkages.
[0137] As another example, a soluble alpha-glucan fiber composition
can comprise 93 to 97% alpha-(1,3) glycosidic linkages and less
than 3% alpha-(1,6) glycosidic linkages and has a weight-average
molecular weight corresponding to a DP of 3 to 7 mixture. In a
further embodiment, a soluble alpha-glucan fiber composition can
comprise about 95% alpha-(1,3) glycosidic linkages and about 1%
alpha-(1,6) glycosidic linkages and has a weight-average molecular
weight corresponding to a DP of 3 to 7 mixture. In a further aspect
of the above embodiment, a soluble alpha-glucan fiber composition
can further comprise 1 to 3% alpha-(1,3,6) linkages or preferably
about 2% alpha-(1,3,6) linkages.
[0138] As another example, in addition to the above-mentioned
glycosidic linkage content embodiments, a soluble alpha-glucan
fiber composition can further comprise less than 5%, preferably
less than 1%, and most preferably less than 0.5% alpha-(1,4)
glycosidic linkages.
[0139] As another example, in addition the above-mentioned
glycosidic linkage content embodiments, a soluble alpha-glucan
fiber composition can comprise a weight average molecular weight
(M.sub.w) of less than 5000 Daltons, preferably less than 2500
Daltons, more preferably between 500 and 2500 Daltons, and most
preferably about 500 to about 2000 Daltons.
[0140] As another example, in addition to any of the above
features, a soluble alpha-glucan fiber composition can comprise a
viscosity of less than 250 centipoise (0.25 Pa-s), preferably less
than 10 cP (0.01 Pa-s), preferably less than 7 cP (0.007 Pa-s),
more preferably less than 5 cP (0.005 Pa-s), more preferably less
than 4 cP (0.004 Pa-s), and most preferably less than 3 cP (0.003
Pa-s) at 12 wt % in water at 20.degree. C.
[0141] A soluble alpha-glucan fiber composition can have, in
certain embodiments, a digestibility of less than 10%, or
preferably less than 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, or 1%
digestibility as measured by the Association of Analytical
Communities (AOAC) method 2009.01. In another aspect, the relative
level of digestibility may alternatively be determined using AOAC
2011.25 (Integrated Total Dietary Fiber Assay) (McCleary et al.,
2012, J. AOAC Int., 95 (3), 824-844).
[0142] In addition to any of the above embodiments, a soluble
alpha-glucan fiber composition can have a solubility of at least
20% (w/w), preferably at least 30%, 40%, 50%, 60%, or 70% in pH 7
water at 25.degree. C.
[0143] In one embodiment, a soluble alpha-glucan fiber composition
can comprise a reducing sugar content of less than 10 wt %,
preferably less than 5 wt %, and most preferably 1 wt % or
less.
[0144] In one embodiment, a soluble alpha-glucan fiber composition
can comprise a caloric content of less than 4 kcal/g, preferably
less than 3 kcal/g, more preferably less than 2.5 kcal/g, and most
preferably about 2 kcal/g or less.
[0145] As another example, a soluble alpha-glucan herein can
comprise:
[0146] a) 10% to 30% alpha-1,3-glycosidic linkages;
[0147] b) 65% to 87% alpha-1,6-glycosidic linkages;
[0148] c) less than 5% alpha-1,3,6-glycosidic linkages;
[0149] d) a weight average molecular weight (Mw) of less than 5000
Daltons; e) a viscosity of less than 0.25 Pascal second (Pas) at 12
wt % in water at 20.degree. C.;
[0150] f) a dextrose equivalence (DE) in the range of 4 to 40,
preferably 10 to 40;
[0151] g) a digestibility of less than 10% as measured by the
Association of Analytical Communities (AOAC) method 2009.01;
[0152] h) a solubility of at least 20% (w/w) in pH 7 water at
25.degree. C.; and
[0153] i) a polydispersity index (PDI) of less than 5.
[0154] Such a soluble alpha-glucan can be produced as disclosed in
U.S. Appl. No. 62/004,308.
[0155] As another example, a soluble alpha-glucan herein can
comprise:
[0156] a) 25-35 alpha-1,3-glycosidic linkages;
[0157] b) 55-75% alpha-1,6-glycosidic linkages;
[0158] c) 5-15% alpha-1,3,6-glycosidic linkages;
[0159] d) a weight average molecular weight of less than 5000
Daltons;
[0160] e) a viscosity of less than 0.25 Pascal second (Pas) at 12
wt % in water at 20.degree. C.;
[0161] f) a dextrose equivalence (DE) in the range of 4 to 40;
[0162] g) a digestibility of less than 10% as measured by the
Association of Analytical Communities (AOAC) method 2009.01;
[0163] h) a solubility of at least 20% (w/w) in water at 25.degree.
C.; and
[0164] i) a polydispersity index of less than 5.
[0165] Such a soluble alpha-glucan can be produced as disclosed in
U.S. Appl. No. 62/004,312.
[0166] As another example, a soluble alpha-glucan herein can
comprise: [0167] a) at least 95% alpha-1,6-glycosidic linkages;
[0168] b) 1% or less alpha-1,3-glycosidic linkages; [0169] c) less
than 2% alpha-1,3,6-glycosidic linkages; [0170] d) less than 1.5%
alpha-1,4-glycosidic linkages;
[0171] e) a weight average molecular weight of less than 20000
Daltons; f) a viscosity of less than 0.25 Pascal second (Pas) at 12
wt % in water at 20.degree. C.; [0172] g) a dextrose equivalence
(DE) in the range of 1 to 30; [0173] h) a digestibility of less
than 10% as measured by the Association of Analytical Communities
(AOAC) method 2009.01; [0174] i) a solubility of at least 20% (w/w)
in pH 7 water at 25.degree. C.; and
[0175] j) a polydispersity index of less than 5.
[0176] Such a soluble alpha-glucan can be produced as disclosed in
U.S. Appl. No. 62/004,314.
[0177] As another example, a soluble alpha-glucan herein can
comprise:
[0178] a) a range of: [0179] i) 1% to 50% of alpha-1,3-glycosidic
linkages; or [0180] ii) greater than 10% but less than 40%
alpha-1,4-glycosidic linkages; or [0181] iii) any combination of i)
and ii);
[0182] b) 1 to 50% alpha-1,2-glycosidic linkages;
[0183] c) 0-25% alpha-1,3,6-glycosidic linkages;
[0184] d) less than 98% alpha-1,6-glycosidic linkages;
[0185] e) a weight average molecular weight of less than 300
kDa;
[0186] f) a viscosity of less than 0.25 Pascal second (Pas) at 12
wt % in water at 20.degree. C.;
[0187] g) a digestibility of less than 20% as measured by the
Association of Analytical Communities (AOAC) method 2009.01;
[0188] h) a solubility of at least 20% (w/w) in pH 7 water at
25.degree. C.; and
[0189] i) a polydispersity index of less than 26, preferably less
than 5.
[0190] Such a soluble alpha-glucan can be produced as disclosed in
U.S. Appl. No. 62/004,305.
[0191] In certain embodiments, a soluble alpha-glucan is a direct
product of a glucosyltransferase. Such a glucosyltransferase, and
conditions for use thereof in a suitable glucan synthesis reaction,
can be as disclosed herein, or as disclosed in any of U.S. Patent
Appl. Nos. 62/004,290, 62/004,308, 62/004,312, 62/004,314, and/or
62/004,305, for example.
[0192] A soluble alpha-glucan can alternatively be a product, for
example, of the concerted action of both a glucosyltransferase and
an alpha-glucanohydrolase that is capable of hydrolyzing glucan
polymers having one or more alpha-1,3-glycosidic linkages or one or
more alpha-1,6-glycosidic linkages. In some aspects, a glucan
synthesis reaction for producing a soluble alpha-glucan product can
comprise both at least one glucosyltransferase and at least one
alpha-glucanohydrolase. In other aspects, a glucan synthesis
reaction can initially comprise one or more glucosyltransferases as
the only enzyme component(s). Such a reaction produces a first
alpha-glucan product that has not yet been subject to modification
by an alpha-glucanohydrolase. Then, at least one
alpha-glucanohydrolase is added to the reaction for a suitable
period of time to allow modification of the first product to a
soluble alpha-glucan product. Thus, there are different ways by
which to synthesize a soluble alpha-glucan product through the
concerted action of both a glucosyltransferase and an
alpha-glucanohydrolase. Conditions for performing a glucan
synthesis reaction in which one or more alpha-glucanohydrolase
enzymes are included during glucan synthesis reaction and/or after
glucan synthesis can be as disclosed herein, or as disclosed in any
of U.S. Patent Appl. Nos. 62/004,290, 62/004,308, 62/004,312,
62/004,314, and/or 62/004,305, for example.
[0193] An alpha-glucanohydrolase herein can be, for example, a
dextranase (capable of hydrolyzing alpha-1,6-linked glycosidic
bonds; E.C. 3.2.1.11), a mutanase (capable of hydrolyzing
alpha-1,3-linked glycosidic bonds; E.C. 3.2.1.59), a mycodextranase
(capable of endohydrolysis of (1-4)-alpha-D-glucosidic linkages in
alpha-D-glucans containing both (1-3)- and (1-4)-bonds; EC
3.2.1.61), a glucan 1,6-alpha-glucosidase (EC 3.2.1.70), and an
alternanase (capable of endohydrolytically cleaving alternan; E.C.
3.2.1.-; see U.S. Pat. No. 5,786,196).
[0194] A mutanase comprising SEQ ID NO:47 can be used in certain
aspects. Alternatively, a mutanase can comprise an amino acid
sequence that is at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%,
98%, or 99% identical to SEQ ID NO:47 and have mutanase activity,
for example.
[0195] A glucan synthesis reaction as presently disclosed for
producing one or more soluble alpha-glucan products can serve
directly as suitable conditions in which to perform a hydrolysis
reaction herein in which an alpha-glucosidase is used to hydrolyze
an alpha-1,5 glucosyl-fructose linkage. Such hydrolysis can be
performed following any of the conditions disclosed above regarding
hydrolytic treatment of a glucan synthesis reaction that produces
poly alpha-1,3-glucan, for example. Alternatively, a fraction
(e.g., chromatographic fraction) of a glucan synthesis reaction for
producing one or more soluble alpha-glucan products can be used as
suitable conditions in which to perform alpha-glucosidase-mediated
hydrolysis of alpha-1,5 glucosyl-fructose linkages.
[0196] A fraction in certain embodiments herein can be a
chromatographic fraction of a glucan synthesis reaction. For
example, a fraction can be a chromatographic fraction of a glucan
synthesis reaction that produces one or more soluble alpha-glucan
products as disclosed herein. Such a reaction can optionally
include one or more alpha-glucanohydrolases during glucan
synthesis, and/or after completion of glucan synthesis. A fraction
in any of these types of embodiments typically has been obtained
for the purpose of separating all of, or most of (e.g., at least
about 60%, 70%, 80%, 90%, 95%), a soluble alpha-glucan product from
a reaction composition from which it was produced. Once separated
from all or most of a soluble alpha-glucan product, a fraction can
be subjected to any of the alpha-1,5 glucosyl-fructose hydrolysis
processes disclosed herein using one or more alpha-glucanases.
[0197] A chromatographic fraction herein can typically be obtained
using a suitable type of liquid chromatography. Liquid
chromatography can be performed using size-exclusion chromatography
(SEC), column chromatography, high-performance liquid
chromatography (HPLC), ion-exchange chromatography, affinity
chromatography, ultrafiltration, microfiltration, or dialysis, for
example.
[0198] The disclosed invention also concerns a composition produced
by contacting a saccharide with an alpha-glucosidase (e.g.,
transglucosidase), wherein (i) the saccharide is a disaccharide or
oligosaccharide comprising at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage, and (ii) the alpha-glucosidase hydrolyzes
at least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of the
saccharide. The composition produced in this manner comprises a
reduced amount of the saccharide compared to the amount of the
saccharide that was present prior to the contacting. Examples of
the composition include any of those disclosed herein, such as a
hydrolyzed filtrate from a glucan synthesis reaction, or a
hydrolyzed fraction of a glucan synthesis reaction used to produce
soluble alpha-glucan. Any of the features disclosed above and in
the Examples regarding a hydrolysis method and products thereof can
characterize the composition. The following features of the
composition are examples.
[0199] An alpha-glucosidase enzyme in certain embodiments of the
composition can comprise an amino acid sequence that is at least
90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identical to
SEQ ID NO:5, 6, 8, 9, 11, 12, 14, 15, 17, 18, 20, 22, 24, 26, 28,
30, 32, 34, 36, 38, or that of DIAZYME RDF ULTRA (DuPont Industrial
Biosciences). A transglucosidase in certain embodiments of the
composition can comprise an amino acid sequence that is at least
90% identical to SEQ ID NO:1. Alternatively, any of the
alpha-glucosidases disclosed herein can be used to produce the
disclosed composition.
[0200] A saccharide in certain embodiments of the composition has a
degree of polymerization before hydrolysis of 3 to 7.
[0201] A composition produced by a hydrolysis method herein can
have, for example, a concentration of a saccharide that is less
than 50% of the concentration of the saccharide that was present
prior to contacting the saccharide with an alpha-glucosidase.
[0202] A composition produced by a hydrolysis method in certain
embodiments herein can be a glucan synthesis reaction, or a
fraction thereof, in which a saccharide byproduct of the glucan
synthesis reaction is contacted with an alpha-glucosidase. A
fraction in this embodiment can be a filtrate of the glucan
synthesis reaction, or a fraction of a glucan synthesis reaction
used to produce soluble alpha-glucan, for example. The saccharide
in this embodiment can have a degree of polymerization of 3 to 7
before hydrolysis, for example.
[0203] It would be understood by a skilled artisan that the
presently disclosed embodiments are useful, in part, for
saccharifying disaccharides and oligosaccharides that can otherwise
be difficult to breakdown. This feature can be taken advantage of
to perform enhanced methods of (i) fructose enrichment and (ii)
fermentation, for example.
[0204] Example 6 below demonstrates that fructose enrichment by
chromatography is enhanced when using a glucan filtrate hydrolyzed
by an alpha-glucosidase (transglucosidase), as compared to using a
filtrate that was not hydrolyzed.
[0205] Thus, the disclosed invention further concerns a method of
enriching fructose that is present in a fraction of a glucan
synthesis reaction. This method comprises (a) contacting a fraction
obtained from a glucan synthesis reaction with an alpha-glucosidase
(e.g., transglucosidase) under suitable conditions, wherein the
enzyme hydrolyzes at least one alpha-1,3 or alpha-1,6
glucosyl-glucose linkage of a disaccharide or oligosaccharide
comprised within the fraction; and (b) separating fructose from the
hydrolyzed fraction of step (a) to obtain a composition having a
higher concentration of fructose compared to the fructose
concentration of the fraction of step (a).
[0206] The features of the disclosed fructose enrichment method
regarding alpha-glucosidase (e.g., transglucosidase) enzymes, and
fractions of a glucan synthesis reaction, for example, can be
according to any of the disclosures provided herein concerning each
of these features.
[0207] Step (b) of separating fructose can be performed by any
means known in the art. For example, chromatography can be employed
as disclosed in the below Examples, or by following the disclosure
of European Patent Publ. No. EP2292803B1, which is incorporated
herein by reference.
[0208] A composition (e.g., fructose solution or fructose syrup)
having a higher concentration of fructose resulting from the
disclosed enrichment method can have at least about 90, 91, 92, 93,
94, 95, 96, 97, 98, or 99 wt % fructose.
[0209] A fructose enrichment method herein can perform better than
one which utilizes a filtrate that has not been hydrolyzed with an
alpha-glucosidase as presently disclosed. Such increased
performance can be measured in terms of a percent fructose recovery
of at least 40%, 45%, or 50%.
[0210] The present disclosure further concerns a fermentation
method comprising (a) contacting a fraction obtained from a glucan
synthesis reaction with an alpha-glucosidase enzyme (e.g.,
transglucosidase or glucoamylase) under suitable conditions,
wherein the alpha-glucosidase enzyme hydrolyzes at least one
alpha-1,5 glucosyl-fructose linkage of a disaccharide or
oligosaccharide comprised within the fraction; (b) fermenting the
fraction of step (a) with a microbe to yield a product; and (c)
optionally, isolating the product of (b). The fermenting step of
(b) can be performed after step (a) or simultaneously with step
(a). Significantly, this method can be used to produce ethanol, for
example, by fermenting a hydrolyzed filtrate of a glucan synthesis
reaction. The ethanol yield from such a process is higher than the
ethanol yield obtained when fermenting a glucan filtrate that has
not been hydrolyzed.
[0211] The features of the disclosed fermentation method regarding
alpha-glucosidase (e.g., transglucosidase or glucoamylase) enzymes,
disaccharides and oligosaccharides, fractions of a glucan synthesis
reaction, and suitable contacting conditions, for example, can be
according to any of the disclosures provided herein concerning each
of these features.
[0212] A microbe for use in a fermentation method herein can be a
bacteria, yeast, or fungus, for example. Examples of bacteria
useful herein include Lactobacillus species, Streptococcus species,
Bifidobacterium species, Leuconostoc species, Escherichia species
(e.g., E. coli) and Bacillus species. Examples of yeast useful
herein include Saccharomyces species such as S. cerevisiae and S.
bayanus.
[0213] A fermentation method herein can yield a product such as
ethanol or an acid (e.g., lactic acid). It is believed, however,
that other products can be produced if desired. It would be
understood by one of skill in the art that production of certain
products using a fermentation method as disclosed would depend on
various conditions such as the microbe(s) used in the
fermentation.
[0214] Conditions for fermentation herein can be as disclosed in
the below Examples, or as disclosed in EI-Mansi et al. (2006,
Fermentation Microbioloav and Biotechnology, Second Edition, CRC
Press) and Stanbury et al. (1999, Principles of Fermentation
Technology, Second Edition, Butterworth-Heinemann), for example,
which are both incorporated herein by reference.
[0215] The yield of a product in certain embodiments of a
fermentation method herein is higher than the product yield
obtained when fermenting a glucan filtrate that has not been
hydrolyzed with an alpha-glucosidase herein. This comparison can be
with respect to a control fermentation, for example, which used a
non-hydrolyzed fraction of a glucan synthesis reaction. Product
yield of a fermentation herein can be increased by at least about
10%, 20%, 40%, 60%, 80%, or 100% (or any integer value between 10%
and 100%), for example. In addition, the rate of product formation
by a fermentation herein can be increased.
[0216] Example 7 below demonstrates that leucrose can be fermented
to ethanol by yeast provided a feed comprising glucan filtrate that
had not been hydrolyzed. Thus, further disclosed herein is a method
of using a microbe to ferment leucrose to a product (e.g.,
ethanol). Such a method can comprise fermenting a glucan filtrate
that (i) has, or (ii) has not been, hydrolyzed with an
alpha-glucosidase as disclosed herein. Regardless of whether the
leucrose is provided in a glucan filtrate or another form (e.g.,
semi-purified or enriched form), a method for fermenting leucrose
can comprise adapting a microbe (e.g., yeast such as S. cerevisiae)
for utilizing leucrose. Such adaptation can comprise growing a
microbe in the presence of leucrose, and optionally other sugars,
over at least 2 or 3 growth cycles, for example, afterwhich the
microbe utilizes more leucrose for fermenting a product. In certain
embodiments, a microbe can be (i) grown in a first feed comprising
leucrose (1 cycle complete), (ii) removed from the first feed,
(iii) grown in a second feed comprising leucrose (two cycles
complete), (iv) optionally removed from the second feed, and (v)
optionally grown in a third feed (three cycles complete). A microbe
adapted in this manner can have an increased capacity to ferment
leucrose in certain embodiments.
[0217] Example 9 below demonstrates that almost all (e.g., >98%
or >99%) the leucrose present in a glucan filtrate can be used
for fermentation by yeast when the glucan filtrate is hydrolyzed
with a transglucosidase while at the same time fermented with
yeast. Thus, an enhanced leucrose fermentation method herein can
comprise hydrolysis of leucrose with an alpha-glucosidase (e.g.,
transglucosidase or glucoamylase) while simultaneously fermenting
the leucrose with a microbe.
[0218] Non-limiting examples of compositions and methods disclosed
herein include: [0219] 1. A method of hydrolyzing an alpha-1,3 or
alpha-1,6 glucosyl-glucose linkage in a saccharide comprising at
least one alpha-1,3 or alpha-1,6 glucosyl-glucose linkage, wherein
the saccharide is a disaccharide or oligosaccharide, and wherein
the method comprises: [0220] contacting the saccharide with an
alpha-glucosidase enzyme under suitable conditions, wherein the
alpha-glucosidase enzyme hydrolyzes at least one alpha-1,3 or
alpha-1,6 glucosyl-glucose linkage of the saccharide, [0221] and
wherein the amount of the saccharide is reduced compared to the
amount of the saccharide that was present prior to the contacting.
[0222] 2. The method of embodiment 1, wherein the alpha-glucosidase
enzyme is immobilized. [0223] 3. The method of embodiment 1 or 2,
wherein the degree of polymerization of the saccharide before
hydrolysis is 3 to 7. [0224] 4. The method of embodiment 1, 2, or
3, wherein the concentration of the saccharide after the contacting
step is less than 50% of the concentration of the saccharide that
was present prior to the contacting. [0225] 5. The method of
embodiment 1, 2, 3, or 4, wherein the suitable conditions comprise
(i) a glucan synthesis reaction, or (ii) a fraction obtained from
the glucan synthesis reaction; [0226] wherein the saccharide is a
byproduct of the glucan synthesis reaction. [0227] 6. The method of
embodiment 5, wherein the glucan synthesis reaction produces at
least one insoluble alpha-glucan product. [0228] 7. The method of
embodiment 6, wherein the fraction is a filtrate of the glucan
synthesis reaction. [0229] 8. The method of embodiment 5, wherein
the glucan synthesis reaction produces at least one soluble
alpha-glucan product that is [0230] (i) a product of a
glucosyltransferase, or [0231] (ii) a product of the concerted
action of both a glucosyltransferase and an alpha-glucanohydrolase
capable of hydrolyzing glucan polymers having one or more
alpha-1,3-glycosidic linkages or one or more alpha-1,6-glycosidic
linkages. [0232] 9. The method of embodiment 8, wherein the
fraction is a chromatographic fraction of the glucan synthesis
reaction. [0233] 10. The method of any one of embodiments 1-9,
wherein the alpha-glucosidase enzyme is a transglucosidase. [0234]
11. A composition produced by contacting a saccharide with an
alpha-glucosidase enzyme, [0235] wherein the saccharide is a
disaccharide or oligosaccharide and comprises at least one
alpha-1,3 or alpha-1,6 glucosyl-glucose linkage, wherein the enzyme
hydrolyzes at least one alpha-1,3 or alpha-1,6 glucosyl-glucose
linkage of the saccharide, [0236] and wherein the composition
comprises a reduced amount of the saccharide compared to the amount
of the saccharide that was present prior to the contacting. [0237]
12. The composition of embodiment 11, wherein the degree of
polymerization of the saccharide before hydrolysis is 3 to 7.
[0238] 13. The composition of embodiment 11 or 12, wherein the
saccharide is in (i) a glucan synthesis reaction, or (ii) a
fraction obtained from the glucan synthesis reaction; [0239]
wherein the saccharide is a byproduct of the glucan synthesis
reaction. [0240] 14. A method of enriching fructose present in a
fraction of a glucan synthesis reaction, comprising: [0241] (a)
contacting a fraction obtained from a glucan synthesis reaction
with an alpha-glucosidase enzyme under suitable conditions, wherein
the alpha-glucosidase enzyme hydrolyzes at least one alpha-1,3 or
alpha-1,6 glucosyl-glucose linkage of a disaccharide or
oligosaccharide comprised within the fraction; and [0242] (b)
separating fructose from the hydrolyzed fraction of step (a) to
obtain a composition having a higher concentration of fructose
compared to the fructose concentration of the fraction of step (a).
[0243] 15. A fermentation method comprising: [0244] (a) contacting
a fraction obtained from a glucan synthesis reaction with
[0245] an alpha-glucosidase enzyme under suitable conditions,
wherein the alpha-glucosidase enzyme hydrolyzes at least one
alpha-1,3 or alpha-1,6 glucosyl-glucose linkage of a disaccharide
or oligosaccharide comprised within the fraction; [0246] (b)
fermenting the fraction of step (a) with a microbe to yield a
product, wherein the fermenting is performed after step (a) or
simultaneously with step (a); and [0247] (c) optionally, isolating
the product of (b); [0248] wherein the yield of the product of (b)
is increased compared to the product yield of fermenting a fraction
of the glucan synthesis reaction that has not been contacted with
the alpha-glucosidase enzyme.
EXAMPLES
[0249] The disclosed invention is further defined in the following
Examples. It should be understood that these Examples, while
indicating certain preferred aspects of the invention, are given by
way of illustration only. From the above discussion and these
Examples, one skilled in the art can ascertain the essential
characteristics of this invention, and without departing from the
spirit and scope thereof, can make various changes and
modifications of the invention to adapt it to various uses and
conditions.
Abbreviations
[0250] The meaning of some of the abbreviations used herein is as
follows: "g" means gram(s), "h" means hour(s), "mL" means
milliliter(s), "psi" means pound(s) per square inch, "wt %" means
weight percentage, ".mu.m" means micrometer(s), "%" means percent,
".degree. C." means degrees Celsius, "mg" means milligram(s), "mm"
means millimeter(s), "mL/min" means milliliters per minute, "m"
means meter(s), ".mu.L" means microliter(s), "mmol" means
millimole(s), "min" means minute(s), "mol %" means mole percent,
"M" means molar, "mg/g" means milligram per gram, "rpm" means
revolutions per minute, "MPa" means megaPascals.
General Methods
[0251] All reagents were obtained from Sigma-Aldrich (St. Louis,
Mo.) unless stated otherwise. Sucrose was obtained from VWR
(Radnor, Pa.).
Preparation of Crude Extracts of Glucosyltransferase (gtf)
Enzymes
[0252] The Streptococcus salivarius gtfJ enzyme (SEQ ID NO:3) was
expressed in E. coli strain DH10B using an isopropyl
beta-D-1-thiogalactopyranoside (IPTG)-induced expression system.
SEQ ID NO:3 has an N-terminal 42-residue deletion compared to the
S. salivarius gtfJ amino acid sequence in GENBANK Identification
No. 47527, but includes a start methionine. Briefly, E. coli DH10B
cells were transformed to express SEQ ID NO:3 from a DNA sequence
codon-optimized to express the gtfJ enzyme in E. coli. This DNA
sequence was contained in the expression vector, pJexpress404.RTM.
(DNA 2.0, Menlo Park Calif.). The transformed cells were inoculated
to an initial optical density (OD at 600.sub.nm) of 0.025 in LB
medium (10 g/L Tryptone; 5 g/L yeast extract, 10 g/L NaCl) and
allowed to grow at 37.degree. C. in an incubator while shaking at
250 rpm. The cultures were induced by addition of 1 mM IPTG when
they reached an OD.sub.600 of 0.8-1.0. Induced cultures were left
on the shaker and harvested 3 hours post induction.
[0253] GtfJ enzyme (SEQ ID NO:3) was harvested by centrifuging
cultured cells (25.degree. C., 16000 rpm) in an Eppendorf.RTM.
centrifuge, re-suspending the cells in 5.0 mM phosphate buffer (pH
7.0) and cooling to 4.degree. C. on ice. The cells were broken
using a bead beater with 0.1-mm silica beads, and then centrifuged
at 16000 rpm at 4.degree. C. to pellet the unbroken cells and cell
debris. The crude extract (containing soluble GtfJ enzyme, SEQ ID
NO:3) was separated from the pellet and analyzed by Bradford
protein assay to determine protein concentration (mg/mL).
[0254] The Streptococcus sp. C150 gtf-S enzyme (SEQ ID NO:40) was
prepared as follows. SG1184 is a Bacillus subtilis expression
strain that expresses a truncated version of the
glycosyltransferase Gtf-S ("GTF0459") from Streptococcus sp. C150
(GENBANK.RTM. GI:321278321). The gene (SEQ ID NO:41) encoding an
N-terminal truncated protein GTF0459 (SEQ ID NO:42) from E. coli
expression plasmid pMP79 was cloned into the NheI and HindIII sites
of the Bacillus subtilis integrative expression plasmid p4JH under
the aprE promoter and fused with the B. subtilis AprE signal
peptide on the vector. The construct was first transformed into E.
coli DH10B and selected on LB with ampicillin (100 .mu.g/mL)
plates. The confirmed construct pDCQ984 expressing GTF0459 was then
transformed into B. subtilis BG6006 containing nine protease
deletions (amyE::xylRPxylAcomK-ermC, degUHy32, oppA,
.DELTA.spoIIE3501, .DELTA.aprE, .DELTA.nprE, .DELTA.epr,
.DELTA.ispA, .DELTA.bpr, .DELTA.vpr, .DELTA.wprA, .DELTA.mpr-ybfJ,
.DELTA.nprB) and selected on LB plates with chloramphenicol (5
.mu.g/mL). The colonies grown on LB plates with 5 .mu.g/mL
chloramphenicol were streaked several times onto LB plates with 25
.mu.g/mL chloramphenicol. The resulting B. subtilis expression
strain, SG1184, was first grown in LB medium with 25 .mu.g/mL
chloramphenicol and then subcultured into GrantsII medium
containing 25 .mu.g/mL chloramphenicol grown at 30.degree. C. for
2-3 days. The cultures were spun at 15,000 g for 30 min at
4.degree. C. and the supernatant was filtered through 0.22-.mu.m
filters. The filtered supernatant was aliquoted and frozen at
-80.degree. C.
[0255] B. subtilis SG1184 strain, expressing GTF0459 (SEQ ID
NO:42), was grown under an aerobic submerged condition by
conventional fed-batch fermentation. A nutrient medium was used
containing 0-0.25% corn steep solids (Roquette), 5-25 g/L sodium
and potassium phosphate, a solution of 0.3-0.6 M ferrous sulfate,
manganese chloride and calcium chloride, 0.5-4 g/L magnesium
sulfate, and a solution of 0.01-3.7 g/L zinc sulfate, cuprous
sulfate, boric acid and citric acid. An antifoam agent, FOAMBLAST
882, at 2-4 mL/L was added to control foaming. A 10-L fermentation
was fed with 50% (w/w) glucose feed when initial glucose in batch
was non-detectable. The glucose feed rate was ramped over several
hours. The fermentation was controlled at 30.degree. C. and 20% DO,
and at initial agitation of 750 rpm. The pH was controlled at 7.2
using 50% (v/v) ammonium hydroxide. Fermentation parameters such as
pH, temperature, airflow, and DO % were monitored throughout the
entire 2-day fermentation run. The culture broth was harvested at
the end of the run and centrifuged to obtain supernatant. The
supernatant containing GTF0459 (SEQ ID NO:42) was then stored
frozen at -80.degree. C.
[0256] The S. mutans MT-4239 gtf-C enzyme (SEQ ID NO:43) was
prepared as follows. A gene encoding a truncated version of a
glucosyltransferase (gtf) enzyme identified in GENBANK.RTM. as
GI:3130088 (SEQ ID NO:43; gtf-C from S. mutans MT-4239) was
synthesized using codons optimized for expression in Bacillus
subtilis and synthesized by GenScript. The gene (SEQ ID NO:44)
encoding GTF0088BsT1 with an N-terminal truncation and a C-terminal
T1 truncation (SEQ ID NO:45) was amplified from the GENSCRIPT
plasmid and cloned into the NheI and HindIII sites of the Bacillus
subtilis integrative expression plasmid p4JH under the aprE
promoter and fused with the B. subtilis AprE signal peptide on the
vector. The construct was first transformed into E. coli DH10B and
selected on LB with ampicillin (100 .mu.g/mL) plates. The confirmed
construct pDCQ1021 expressing GTF0088BsT1 was then transformed into
B. subtilis BG6006 containing nine protease deletions
(amyE::xylRPxylAcomK-ermC, degUHy32, oppA, .DELTA.spollE3501,
.DELTA.aprE, .DELTA.nprE, .DELTA.epr, .DELTA.ispA, .DELTA.bpr,
.DELTA.vpr, .DELTA.wprA, .DELTA.mpr-ybfJ, .DELTA.nprB) and selected
on the LB plates with chloramphenicol (5 .mu.g/mL). The colonies
grown on LB plates with 5 .mu.g/mL chloramphenicol were streaked
several times onto LB plates with 25 .mu.g/mL chloramphenicol. The
resulting B. subtilis expression strain SG1221 was first grown in
LB medium with 25 .mu.g/mL chloramphenicol and then subcultured
into GrantsII medium containing 25 .mu.g/mL chloramphenicol grown
at 30.degree. C. for 2-3 days. The cultures were spun at 15,000 g
for 30 min at 4.degree. C. and the supernatant was filtered through
0.22-.mu.m filters. The filtered supernatant was aliquoted and
frozen at -80.degree. C.
[0257] B. subtilis SG1221 strain, expressing GTF0088BsT1 (SEQ ID
NO:45), was grown under an aerobic submerged condition by
conventional fed-batch fermentation. A nutrient medium was used
containing 0-0.25% corn steep solids (Roquette), 5-25 g/L sodium
and potassium phosphate, a solution of 0.3-0.6 M ferrous sulfate,
manganese chloride and calcium chloride, 0.5-4 g/L magnesium
sulfate, and a solution of 0.01-3.7 g/L zinc sulfate, cuprous
sulfate, boric acid and citric acid. An antifoam agent, FOAMBLAST
882, at 2-4 mL/L was added to control foaming. A 2-L fermentation
was fed with 50% (w/w) glucose feed when initial glucose in batch
was non-detectable. The glucose feed rate was ramped over several
hours. The fermentation was controlled at 30.degree. C. and 20% DO,
and at an initial agitation of 400 rpm. The pH was controlled at
7.2 using 50% (v/v) ammonium hydroxide. Fermentation parameters
such as pH, temperature, airflow, and DO % were monitored
throughout the entire 2-day fermentation run.
[0258] The culture broth was harvested at the end of run and
centrifuged to obtain supernatant. The supernatant containing
GTF088BsT1 (SEQ ID NO:45) was then stored frozen at -80.degree.
C.
Determination of the Glucosyltransferase GTF0459 and GTF0088BsT1
Activity
[0259] Glucosyltransferase activity assay was performed by
incubating 1-10% (v/v) crude protein extract containing GTF enzyme
with 200 g/L sucrose in 25 mM or 50 mM sodium acetate buffer at pH
5.5 in the presence or absence of 25 g/L dextran (MW .about.1500,
Sigma-Aldrich, Cat.#31394) at 37.degree. C. and 125 rpm orbital
shaking. One aliquot of reaction mixture was withdrawn at 1 h, 2 h
and 3 h and heated at 90.degree. C. for 5 min to inactivate the
GTF. The insoluble material was removed by centrifugation at
13,000.times.g for 5 min, followed by filtration through 0.2-.mu.m
RC (regenerated cellulose) membrane. The resulting filtrate was
analyzed by HPLC using two AMINEX HPX-87C columns series at
85.degree. C. (BioRad, Hercules, Calif.) to quantify sucrose
concentration. The sucrose concentration at each time point was
plotted against the reaction time and the initial reaction rate was
determined from the slope of the linear plot. One unit of GTF
activity was defined as the amount of enzyme needed to consume one
micromole of sucrose in one minute under the assay conditions.
Preparation of a Crude Extract of Alpha-(1,3)-Glucanohydrolase
(Mutanase)
[0260] A gene encoding the Penicillium marneffei ATCC.RTM.
18224.TM. mutanase identified in GENBANK.RTM. as GI:212533325 was
synthesized by GenScript (Piscataway, N.J.). The nucleotide
sequence (SEQ ID NO:46) encoding protein sequence (MUT3325; SEQ ID
NO:47) was subcloned into plasmid pTrex3 at SacII and AscI
restriction sites, a vector designed to express the gene of
interest in Trichoderma reesei, under control of CBHI promoter and
terminator, with Aspergillus niger acetamidase for selection. The
resulting plasmid was transformed into T. reesei by biolistic
injection. The detailed method of biolistic transformation is
described in International PCT Patent Application Publication
WO2009/126773 A1, which is incorporated herein by reference. A
1-cm.sup.2 agar plug with spores from a stable clone, TRM05-3, was
used to inoculate the production media (described below). The
culture was grown in shake flasks for 4-5 days at 28.degree. C. and
220 rpm. To harvest the secreted proteins, the cell mass was first
removed by centrifugation at 4000 g for 10 min and the supernatant
was filtered through 0.2-.mu.m sterile filters. The expression of
mutanase MUT3325 (SEQ ID NO:47) was confirmed by SDS-PAGE.
[0261] The production media component is listed below.
NREL-Trich Lactose Defined
TABLE-US-00002 [0262] Formula Amount Units ammonium sulfate 5 g
PIPPS 33 g BD BACTO casamino acid 9 g KH.sub.2PO.sub.4 4.5 g
CaCl.sub.2.cndot.2H.sub.2O 1.32 g MgSO.sub.4.cndot.7H.sub.2O 1 g T.
reesei trace elements 2.5 mL NaOH pellet 4.25 g Adjust pH to 5.5
with 50% NaOH Bring volume to 920 mL Add to each aliquot: 5 drops
FOAMBLAST Autoclave, then add 80 mL 20% lactose filter
sterilized
T. reesei Trace Elements
TABLE-US-00003 Formula Amount Units citric acid.cndot.H.sub.2O
191.41 g FeSO.sub.4.cndot.7H.sub.2O 200 g
ZnSO.sub.4.cndot.7H.sub.2O 16 g CuSO.sub.4.cndot.5H.sub.2O 3.2 g
MnSO.sub.4.cndot.H.sub.2O 1.4 g H.sub.3BO.sub.3 (boric acid) 0.8 g
Bring volume to 1 L
[0263] Fermentation seed culture was prepared by inoculating 0.5 L
of minimal medium in a 2-L baffled flask with 1.0 mL frozen spore
suspension of the MUT3325 expression strain TRM05-3 (The minimal
medium was composed of 5 g/L ammonium sulfate, 4.5 g/L potassium
phosphate monobasic, 1.0 g/L magnesium sulfate heptahydrate, 14.4
g/L citric acid anhydrous, 1 g/L calcium chloride dihydrate, 25 g/L
glucose and trace elements including 0.4375 g/L citric acid, 0.5
g/L ferrous sulfate heptahydrate, 0.04 g/L zinc sulfate
heptahydrate, 0.008 g/L cupric sulfate pentahydrate, 0.0035 g/L
manganese sulfate monohydrate and 0.002 g/L boric acid. The pH was
5.5.). The culture was grown at 32.degree. C. and 170 rpm for 48
hours before being transferred to 8 L of the production medium in a
14-L fermenter. The production medium was composed of 75 g/L
glucose, 4.5 g/L potassium phosphate monobasic, 0.6 g/L calcium
chloride dehydrate, 1.0 g/L magnesium sulfate heptahydrate, 7.0 g/L
ammonium sulfate, 0.5 g/L citric acid anhydrous, 0.5 g/L ferrous
sulfate heptahydrate, 0.04 g/L zinc sulfate heptahydrate, 0.00175
g/L cupric sulfate pentahydrate, 0.0035 g/L manganese sulfate
monohydrate, 0.002 g/L boric acid and 0.3 mL/L FOAMBLAST 882.
[0264] The fermentation was first run with batch growth on glucose
at 34.degree. C., 500 rpm for 24 h. At the end of 24 h, the
temperature was lowered to 28.degree. C. and the agitation speed
was increased to 1000 rpm. The fermenter was then fed with a
mixture of glucose and sophorose (62% w/w) at a specific feed rate
of 0.030 g glucose-sophorose solids/g biomass/hr. At the end of
run, the biomass was removed by centrifugation and the supernatant
containing the MUT3325 mutanase (SEQ ID NO:47) was concentrated
about 10-fold by ultrafiltration using 10-kD Molecular Weight
Cut-Off ultrafiltration cartridge (UFP-10-E-35; GE Healthcare,
Little Chalfont, Buckinghamshire, UK). The concentrated protein was
stored at -80.degree. C.
Determination of Alpha-Glucanohydrolase (Mutanase) Activity
[0265] Insoluble mutan polymers required for determining mutanase
activity were prepared using secreted enzymes produced by
Streptococcus sobrinus ATCC.RTM.33478.TM.. Specifically, one loop
of glycerol stock of S. sobrinus ATCC.RTM. 33478.TM. was streaked
on a BHI agar plate (Brain Heart Infusion agar, Teknova, Hollister,
Calif.), and the plate was incubated at 37.degree. C. for 2 days. A
few colonies were picked using a loop to inoculate 2.times.100 mL
BHI liquid medium in the original medium bottle from Teknova, and
the culture was incubated at 37.degree. C., held static for 24 h.
The resulting cells were removed by centrifugation and the
resulting supernatant was filtered through a 0.2-.mu.m sterile
filter; 2.times.101 mL of filtrate was collected. To the filtrate
was added 2.times.11.2 mL of 200 g/L sucrose (final sucrose 20
g/L). The reaction was incubated at 37.degree. C. with no agitation
for 67 h. The resulting polysaccharide polymers were collected by
centrifugation at 5000.times.g for 10 min. The supernatant was
carefully decanted. The insoluble polymers were washed 4 times with
40 mL of sterile water. The resulting mutan polymers were
lyophilized for 48 h. Mutan polymer (390 mg) was suspended in 39 mL
of sterile water to make a 10 mg/mL suspension. The mutan
suspension was homogenized by sonication (40% amplitude until large
lumps disappear, .about.10 min in total). The homogenized
suspension was aliquoted and stored at 4.degree. C.
[0266] A mutanase assay was initiated by incubating an appropriate
amount of enzyme with 0.5 mg/mL mutan polymer (prepared as
described above) in 25 mM KOAc buffer at pH 5.5 and 37.degree. C.
At various time points, an aliquot of reaction mixture was
withdrawn and quenched with equal volume of 100 mM glycine buffer
(pH 10). The insoluble material in each quenched sample was removed
by centrifugation at 14,000.times.g for 5 min. The reducing ends of
oligosaccharide and polysaccharide polymer produced at each time
point were quantified by the p-hydroxybenzoic acid hydrazide
solution (PAHBAH) assay (Lever M., Anal. Biochem., (1972)
47:273-279) and the initial rate was determined from the slope of
the linear plot of the first three or four time points of the time
course. The PAHBAH assay was performed by adding 10 .mu.L of
reaction sample supernatant to 100 .mu.L of PAHBAH working solution
and heated at 95.degree. C. for 5 min. The working solution was
prepared by mixing one part of reagent A (0.05 g/mL p-hydroxy
benzoic acid hydrazide and 5% by volume of concentrated
hydrochloric acid) and four parts of reagent B (0.05 g/mL NaOH, 0.2
g/mL sodium potassium tartrate). The absorption at 410 nm was
recorded and the concentration of the reducing ends was calculated
by subtracting appropriate background absorption and using a
standard curve generated with various concentrations of glucose as
standards.
Analysis of Reaction Profiles by HPLC
[0267] Periodic samples from reactions were taken and analyzed
using an Agilent.RTM. 1260 HPLC equipped with a refractive index
detector. An Aminex.RTM. HP-87C column (BioRad, Hercules, Calif.)
having deionized water at a flow rate of 0.6 mL/min and 85.degree.
C. was used to quantitate the level of sucrose, glucose, leucrose
and fructose in gtf reactions. An Aminex.RTM. HP-42A column
(BioRad) having deionized water at a flow rate of 0.6 mL/min and
85.degree. C. was used to quantitate soluble oligosaccharide
byproducts (DP2-DP7) in gtf reactions.
[0268] A Dionex.RTM. UltiMate.TM. 3000 HPLC (Thermo Scientific)
equipped with a refractive index detector was used for samples
involving immobilized enzymes (Example 4). A Phenomenex.RTM.
Rezex.TM. calcium monosaccharide column having deionized water at a
flow rate of 0.3 mL/min and 85=C was used to analyze the
sugars.
Analysis of Oligosaccharide Linkage by NMR
[0269] NMR data were acquired on an Agilent DD2 spectrometer
operating at 500 MHz for .sup.1H using a 5-mm cryogenic
triple-resonance pulsed-field gradient (PFG) probe. Water
suppression was obtained by carefully placing the observe
transmitter frequency on resonance for the residual water signal in
a "presat" experiment, and then using the first slice of a NOESY
experiment with a full phase cycle (multiple of 32) and a mix time
of 10 ms. One-dimensional .sup.1H spectra were acquired with a
spectral width of 6410 Hz, acquisition time of 5.1 s, 65536 data
points, 4 s presaturation and a 90-degree pulse of 5.85 .mu.s.
Sample temperature was maintained at 25.degree. C. Samples were
prepared by adding 50 .mu.L to a 5-mm NMR tube along with 450 .mu.L
of D.sub.2O and 60 L of D.sub.2O containing 12.4 mM DSS
(4,4-dimethyl-4-silapentane-1-sulfonic acid sodium salt) internal
reference with the methyl resonance set to 0 ppm. Chemical shift
assignments for different anomeric linkages were taken from: Goffin
et al. (2009, Bull Korean Chem. Soc. 30:2535-2541. Peak assignments
were 5.35 ppm for alpha(1,3) linkages, 5.1 ppm for leucrose, and
4.95 for alpha(1,6) linkages. Reducing ends (RE) were assigned to
be 5.2 for alpha RE and 4.65 for beta RE.
Example 1
Production of Sugar Syrup by Polymerization of Sucrose
[0270] This example discloses the general manner in which a mixture
of soluble sugars was produced by polymerization of sucrose with a
gtf enzyme in a glucan synthesis reaction. Specifically, a filtrate
of a glucan synthesis reaction was prepared, which was then
concentrated to a syrup.
[0271] Sucrose (3000 g) was added to a clean 5-gallon polyethylene
bucket. Water (18.1 L) and Fermasure.TM. (10 mL) were added to the
bucket, and the pH was adjusted to 7.0 by addition of 5 vol % NaOH
and 5 vol % H.sub.2SO.sub.4. The final volume was .about.20 L and
the initial concentration of sucrose as measured by HPLC was 152.5
g/L. The glucan polymerization reaction was initiated by adding 0.3
vol % of crude gtf enzyme (SEQ ID NO:3) extract prepared as
described in the General Methods section. This extract contained
about 2.9 mg/mL of protein. Agitation to the reaction solution was
provided using an overhead mechanical motor equipped with a glass
shaft and PTFE blade.
[0272] After 48 hours, HPLC analysis revealed that 96% of the
sucrose had been consumed and the reaction was deemed to be
complete. The insoluble poly-alpha-1,3-glucan product of the
reaction was removed by filtration with a Buchner filter funnel
using 325-mesh steel screen and 40-micron filter paper. The mother
liquor (filtrate) was then concentrated using a rotary evaporator
(bath temp of 40-50.degree. C.) to a total sugar concentration of
about 320 g/L sugars. The composition of the concentrated filtrate
is provided in Table 2.
TABLE-US-00004 TABLE 2 Composition of a Concentrated Filtrate of a
Glucan Synthesis Reaction Sucrose Leucrose Glucose Fructose DP2
DP3+ Total g/L 13.5 130.6 25.5 103.8 18.3 28.3 320.1 wt % 4.2 40.8
8 32.4 5.7 8.9 100
[0273] Table 2 indicates that the concentrated filtrate of the
glucan synthesis reaction contains sucrose, fructose, glucose,
leucrose and oligosaccharides of DP2-DP7.
Example 2
Effect of Enzymes on Hydrolysis of Sugars in a Filtrate of a Glucan
Synthesis Reaction
[0274] This example measures the activity of various glucoamylase
(EC 3.2.1.3), transglucosidase (EC 2.4.1.24), beta-glucosidase (EC
3.2.1.21), alpha-amylase (EC 3.2.1.1) and glucosidase (EC 3.2.1)
enzymes for the purpose of reducing the concentration of leucrose
and/or oligosaccharide byproducts in a concentrated filtrate of a
glucan synthesis reaction. Certain enzymes such as DIAZYME RDF
ULTRA, transglucosidase (EC 2.4.1.24) and glucoamylase (EC
3.2.1.3), which are all alpha-glucosidase, were found to be
particularly effective at reducing the amount of these byproducts,
resulting in a corresponding increase in monosaccharides (glucose
and fructose) in the treated filtrate.
[0275] A filtrate of a glucan synthesis reaction was first prepared
and concentrated to a syrup according to the procedure outline in
Example 1. The composition of this concentrated filtrate is
provided in Table 3. NMR analysis revealed that the ratio of
alpha(1,3) to alpha (1,6) linkages present in the syrup was
78:22.
TABLE-US-00005 TABLE 3 Composition of a Concentrated Filtrate of a
Glucan Synthesis Reaction Sucrose Leucrose Glucose Fructose DP2
DP3+ Total g/L 161 210 93 302 33 61 860 wt % 18.7 24.4 10.8 35.1
3.8 7.1 100.0
[0276] The syrup of Table 3 was used to test the hydrolytic
activity of various enzymes against leucrose and oligosaccharide
byproducts of the glucan synthesis reaction. It was not obvious at
the outset of these experiments what enzyme could be used to
hydrolyze both these byproducts, given that leucrose contains an
unusual linkage [alpha(1,5)-glucosyl fructose] and that the
oligosaccharides comprise primarily alpha(1,3) and alpha(1,6)
glucosyl-glucose linkages. Enzymes with various activities were
selected for this analysis (Table 4).
TABLE-US-00006 TABLE 4 Enzymes Evaluated for Leucrose and
Oligosaccharide Hydrolysis Activity or protein Enzyme Source
Function concentration DIAZYME RDF ULTRA DuPont IB.sup.a
1,4-alpha-glucosidase 710 U/g Oligo-1,6-glucosidase Megazyme
1,6-alpha-glucosidase 320 U/mg SPEZYME FRED DuPont IB Alpha-amylase
1-5% SPEZYME RSL DuPont IB Alpha-amylase 1-5% OPTIMAX L-1000 DuPont
IB Pullulanase 1-5% TRANSGLUCOSIDASE DuPont IB Transglucosidase
>1700 TGU/g L-2000 purified DuPont IB Transglucosidase 22.7
mg/mL TRANSGLUCOSIDASE L-2000 ACCELLERASE BG DuPont IB
Beta-glucosidase 3000 U/g NOVO 188 Sigma-Aldrich Beta-glucosidase
>250 U/g SUMIZYME BFS-L Shin Nihon Beta-glucosidase 100 U/g
Chemical SUMIZYME BGA Shin Nihon Beta-glucosidase 2000 U/g Chemical
ACCELERASE TRIO DuPont IB Cellulase 5-10% ACCELERASE 1500 DuPont IB
Cellulase/Beta- 5-10%/0.5-4% glucosidase OPTIDEX L-400 DuPont IB
Glucoamylase >350 GAU/g GC 147 DuPont IB Glucoamylase 400 GAU/g
GC 321 DuPont IB Glucoamylase >350 GAU/g .sup.aDuPont Industrial
Biosciences
[0277] Conditions for treating the syrup of Table 3 with each of
the above enzymes are provided in Table 5 (enzyme loading, time,
temperature, pH, sugar concentration). The syrup was diluted with
water to reach the sugar concentration used in each hydrolysis
reaction. Table 5 further provides the percent hydrolysis of the
leucrose and DP3+(at least DP3-DP7) oligosaccharides by each
enzyme. Percent DP3+ hydrolysis was calculated as (1-(wt % DP3+
oligosaccharides in the final syrup)/(wt % DP3+ oligosaccharides in
the initial syrup)). Similarly, percent leucrose hydrolysis was
calculated as (1-(wt % leucrose in the final syrup)/(wt % leucrose
in the initial syrup)).
TABLE-US-00007 TABLE 5 Hydrolysis of Leucrose and Oligosaccharides
in a Concentrated Filtrate by Various Enzymes Enzyme Sugar
DP3+.sup.b Leucrose loading Temp Time concentration hydrolysis
hydrolysis Example Enzyme (vol %) (.degree. C.) (hr) pH (g/L).sup.a
(%) (%) 2.1 DIAZYME 0.5 60 88 4.0 300 36 13 RDF ULTRA 2.2
Oligo-1,6- 5 40 72 5.5 400 43 <2 glucosidase 2.3 SPEZYME 0.5 60
66 4.0 280 <2 <2 FRED 2.4 SPEZYME RSL 0.5 60 48 4 290 <2
<2 2.5 OPTIMAX 0.5 60 48 4 290 <2 <2 L-1000 2.6 TG L-2000
0.25 60 70 4.0 260 54 >98 2.7 TG L-2000 2 60 48 4.5 300 96
>98 2.8 PURIFIED 0.5 60 48 4.5 260 56 >98 TG L-2000 2.9
ACCELERASE 0.5 60 70 4 300 11 <2 BG 2.10 NOVO 188 0.25 60 70 4
300 49 36 2.11 NOVO 188 5 60 40 5.5 340 93 29 2.12 SUMIZYME 0.5 60
48 4.5 260 55 46 BFS-L 2.13 SUMIZYME 0.1 wt % 60 48 4.5 260 26 77
BGA 2.14 ACCELERASE 0.5 60 48 4 290 28 6.6 TRIO 2.15 ACCELERASE 0.5
60 66 4 280 26 4 1500 2.16 GC 147 0.5 60 40 4 300 55 12 2.17 GC 321
5 60 72 5.5 400 74 64 2.18 OPTIDEX 0.5 60 70 4 300 27 25 L-400
.sup.aSugar concentration (total concentration of sucrose, glucose,
fructose, leucrose and oligosaccharides) measured by HPLC; reported
values are rounded to nearest 10 g/L increment, .sup.bDP3+ contains
DP3-DP7, but may contain larger soluble oligosaccharides that have
a high ratio of alpha-1,6 linkages to alpha-1,3 linkages, when
produced using certain gtf enzymes.
[0278] Table 5 indicates that 1,4-alpha-glucosidase and
1,6-alpha-glucosidase showed some (Example 2.1) or very little
(Example 2.2) hydrolysis of leucrose, but did release some glucose
from the oligosaccharides. Use of alpha-amylase (Example 2.3 and
Example 2.4) showed very little activity against the compounds of
interest. Similarly, use of a pullulanase (Example 2.5) showed very
little activity.
[0279] Cellulases (Examples 2.14 and 2.15) were largely ineffective
at hydrolyzing leucrose, but did hydrolyze some of the
oligosaccharides.
[0280] Although the oligosaccharides did not contain beta linkages,
surprisingly, beta-glucosidase enzymes also showed a range of
hydrolytic conversion from very low (ACCELERASE BG, Example 2.9) to
very high (NOVO 188, Examples 2.10 and 2.11). The relative efficacy
of these enzymes varied quite dramatically. In some cases, the
amount of oligosaccharide that was hydrolyzed greatly exceeded
(Example 2.11), or was close to (Example 2.12), the percentage of
leucrose that was hydrolyzed. In other cases, leucrose was highly
hydrolyzed by beta-glucosidase while the oligosaccharides were
moderately hydrolyzed (Example 2.13). The high disparity amongst
the results observed with beta-glucosidase suggests that the
presence of other enzymes in the tested beta-glucosidase
formulations, such as glucoamylase or another type of
alpha-glucosidase, could be responsible for the observed
activity.
[0281] Conversely, the results in Table 5 indicate that
transglucosidase (TG L-2000, Example 2.6) showed very high activity
at hydrolyzing both the oligosaccharides and leucrose. Leucrose
hydrolysis by transglucosidase appeared quantitative under certain
circumstances, and greater than 95% of the DP3+ material was
hydrolyzed to glucose and DP2 at high enzyme loadings (Example
2.7). Use of a purified version of transglucosidase revealed
similar activity (Example 2.8), indicating that the observed
hydrolysis is due to the transglucosidase enzyme and not background
activity.
[0282] Glucoamylases (Examples 2.16-2.18) showed a range of
activity against leucrose and the oligosaccharides. Only one tested
glucoamylase (Example 2.18) gave less than 30% hydrolysis of both
the leucrose and oligosaccharides.
[0283] The results in Table 5 indicate that alpha-glucosidases such
as DIAZYME RDF ULTRA, glucoamylase and transglucosidase can
hydrolyze leucrose byproduct present in a glucan reaction filtrate.
The ability of alpha-glucosidases to hydrolyze leucrose indicates
that these enzymes can hydrolyze alpha-1,5 glucosyl-fructose
linkages. While this activity was shown above using leucrose as a
substrate, it is believed that this activity can also be extended
to oligosaccharides comprising alpha-1,5 glucosyl-fructose
linkages.
[0284] The results in Table 5 further indicate that
alpha-glucosidases such as glucoamylase and transglucosidase can
hydrolyze oligosaccharide byproducts present in a glucan reaction
filtrate. Since these oligosaccharides are mostly comprised of
glucose monomer units linked by alpha-1,3 and/or alpha-1,6 linkages
(Example 3), the data in Table 5 indicate that alpha-glucosidase
enzymes can hydrolyze alpha-1,3 glucosyl-glucose and/or alpha-1,6
glucosyl-glucose linkages.
[0285] Since alpha-glucosidase enzymes were generally effective at
hydrolyzing the leucrose and/or oligosaccharide byproducts of a
glucan synthesis reaction, these enzymes can be used alone or in
combination to reduce the processing time necessary to generate a
high purity syrup from a glucan reaction filtrate containing an
increased amount of monosaccharides and reduced amount of sugar
byproducts. An example of an effective enzyme combination could be
a transglucosidase such as TG L-2000, for leucrose hydrolysis, and
a glucoamylase (e.g., GC 321) enzyme that efficiently hydrolyzes
oligosaccharide byproducts.
[0286] Thus, alpha-glucosidase enzymes can individually hydrolyze
(i) alpha-1,5 glucosyl-fructose linkages and (ii) alpha-1,3 and
alpha-1,6 glucosyl-glucose linkages in certain saccharides.
Example 3
Comparison of Linkage Distributions of Glucan Reaction Filtrate
Components Before and after Enzyme Hydrolysis
[0287] This example measures the hydrolytic activity of
transglucosidase (EC 2.4.1.24) and beta-glucosidase (EC 3.2.1.21)
enzymes against leucrose and oligosaccharide byproducts present in
a concentrated filtrate of a glucan synthesis reaction.
Transglucosidase was found to reduce the amount of these
byproducts, resulting in a corresponding increase in
monosaccharides (glucose and fructose) in the treated filtrate.
[0288] The oligosaccharide byproducts present in the filtrate of
the above glucan synthesis reaction comprise >90%
glucose-glucose linkages, as determined by NMR (General Methods).
Of the glucose-glucose linkages, .about.78% represent alpha-1,3
linkages and .about.22% represent alpha-1,6 linkages.
[0289] NMR was used to determine the linkage profile of material
generated in Example 2.11 above after hydrolysis. As shown in FIG.
1, the peak corresponding to alpha-1,3 linkages was reduced by 86%,
the peak corresponding to alpha-1,6 linkages was reduced by only
2.3%, and the peak corresponding to leucrose peaks was reduced by
21%. While sucrose was very nearly quantitatively hydrolyzed by
this enzyme, Novo 188 does not appear to be capable of hydrolyzing
alpha-1,6 linkages.
[0290] NMR was similarly used to determine the linkage profile of
material generated using TG L-2000 (SEQ ID NO:1) transglucosidase
(FIG. 2). 210 .mu.L of concentrated filtrate from the material in
Table 3, 300 .mu.L of D.sub.2O, and 90 .mu.L of D.sub.2O containing
12.4 mM DSS as internal reference were mixed in an NMR tube to give
a total sugar concentration of 300 g/L and heated to 60.degree. C.
A time zero spectrum (starting material in FIG. 2) was acquired
after thermal equilibration at 60.degree. C., and then 0.5 vol % of
enzyme was added. The sample was re-equilibrated in the probe at
60.degree. C. and shimmed, and measurements were taken within a few
minutes of analysis. After 10 hours of treatment with TG L-2000
enzyme (treated material in FIG. 2), the peaks corresponding to
alpha-1,3 linkages were reduced by 41%, the peaks corresponding to
alpha-1,6 linkages were reduced by 36%, and the peak corresponding
to leucrose was reduced by >95% (FIG. 2). An increase in both
the alpha-reducing end and beta-reducing end peaks was observed,
which corresponds to an increase in fructose and glucose (FIG.
2).
[0291] These results demonstrate that a transglucosidase can
convert oligosaccharides containing alpha-1,3 and alpha-1,6
linkages into glucose and can convert leucrose into fructose and
glucose. Thus, transglucosidase can hydrolyze (i) alpha-1,5
glucosyl-fructose linkages and (ii) alpha-1,3 and alpha-1,6
glucosyl-glucose linkages in certain saccharides.
Example 4
Hydrolysis of Leucrose and Oligosaccharides in Glucan Reaction
Filtrate Using Immobilized Enzymes
[0292] This Example describes using immobilized glucoamylase (EC
3.2.1.3) and transglucosidase (EC 2.4.1.24) to hydrolyze leucrose
and other oligosaccharides present in filtrate obtained from a
glucan synthesis reaction. Specifically, the effect of immobilized
transglucosidase TG L-2000 (SEQ ID NO:1, obtained from
Genencor/DuPont Industrial Biosciences) and immobilized
glucoamylase GC-147 (obtained from Genencor/DuPont Industrial
Biosciences) on the hydrolysis of leucrose and oligosaccharides
DP2, DP3 and HS (higher sugars, DP4+) in a filtrate of a glucan
synthesis reaction was studied.
[0293] Immobilization of the glucoamylase and transglucosidase
enzymes was carried out according to the method described in U.S.
Pat. No. 5,541,097, which is incorporated herein by reference.
[0294] In a typical process for immobilizing the glucoamylase or
transglucosidase, two batches of about 8.0 g/batch of porous
granular diatomaceous earth (EP Minerals, Reno, Nev.) were hydrated
with distilled water and then transferred to a glass column reactor
of 1.5-cm diameter and 30-cm height. Water was pumped upflow at
about 6-7 mL/min to remove fines from all three columns. Generally,
within an hour the water effluent was free of fines. Water was
drained from the column to the top of the granular diatomaceous
earth beds and replaced with 0.1% w/v aqueous solution of
polyethylenimine (PEI, EPOMIN P-1050). 3500 mL of the PEI solution
was then pumped upflow and effluent was recycled through the beds
for 2 hours. The granular diatomaceous earth beds were then washed
upflow with distilled water for 2 hours to remove free PEI at room
temperature. In this manner, granular diatomaceous earth-PEI
carriers were obtained.
[0295] In the meantime, 3.5 mL of glucoamylase GC-147 having
activity defined in Table 4 was added to 315 ml of 0.02 M acetate
buffer (pH 4.5). 1.575 g of 50% w/w glutaraldehyde (Protectol.RTM.
GA-50) was then slowly added to the aqueous solution of
glucoamylase with gentle mixing, and the glutaraldehyde was allowed
to react with the aqueous glucoamylase solution for 4 hours at a
temperature of 20-25.degree. C. with gentle agitation, which
resulted in formation of a treated enzyme-glutaraldehyde adduct
containing treated glucoamylase. Separately, these steps were
repeated using the transglucosidase TG L-2000 having activity
defined in Table 4 instead of the glucoamylase, thereby resulting
in the formation of a treated enzyme-glutaraldehyde adduct
containing treated transglucosidase.
[0296] Each of the treated enzyme-glutaraldehyde adducts was then
circulated for 4 hours (20-25.degree. C.) in its own column
prepared as above containing granular diatomaceous earth-PEI
carrier. Excess treated adduct was then washed out of the carriers
with water. Columns with immobilized glucoamylase or
transglucosidase were thus prepared.
[0297] A glucan filtrate having the composition defined in Table 3
was diluted to 180 g/L, adjusted to pH 4.5, and passed through a
column containing an immobilized enzyme. Column temperature was
controlled to 60.degree. C. After 16 hours of column equilibration,
samples were taken periodically at different flow rates. Sugar
compositions of hydrolysis reaction products were determined by
HPLC (Table 6). Every time the flow rate setting was changed, the
column was allowed to re-equilibrate for at least 1-2 bed volumes
before sampling. The degree of hydrolysis of leucrose and
oligosaccharides was calculated using the manner described in
Example 2. Three column configurations were tested: 1) immobilized
glucoamylase, 2) immobilized transglucosidase, and 3) immobilized
glucoamylase followed by immobilized transglucosidase.
TABLE-US-00008 TABLE 6 Application of Immobilized Glucoamylase and
Transglucosidase Enzymes to Hydrolyze Oligosaccharides and Leucrose
Mean contact DP3+ Leucrose Immobilized Enzyme time (hr) hydrolysis
(%) hydrolysis (%) GC 147 0.7 16 17 GC 147 1.0 20 22 GC 147 1.3 25
29 GC 147 3.0 39 47 TG L-2000 0.7 28 >95 TG L-2000 1.0 32 >95
IG L-2000 1.3 37 >95 TG L-2000 3.0 47 >95 GC 147 + TG L-2000
6.0 55 >95
[0298] Table 6 indicates that, as the mean contact time (defined as
the nominal column volume divided by the mean flow rate) was
increased, the degree of hydrolysis of leucrose and
oligosaccharides generally increased. Use of the immobilized
transglucosidase to hydrolyze leucrose was particularly effective,
as no significant difference was observed even using the fastest
flow rate that was tested. While each column individually showed
reasonable conversion, the combination of the glucoamylase and
transglucosidase gave the highest hydrolysis of
oligosaccharides.
[0299] Thus, use of an immobilized glucoamylase or
transglucosidase, or both types of immobilized enzymes, represents
an effective technique to hydrolyze oligosaccharides containing
alpha-1,3 and alpha-1,6 glucosyl-glucose linkages, as well as
leucrose. These results are consistent with those of Example 2.
Immobilization of other alpha-glucosidase enzymes should give
similar results.
Example 5
Enrichment of Fructose from a Glucan Reaction Filtrate by
Chromatography
[0300] This example discloses how fructose in a glucan reaction
filtrate can be further enriched through chromatography.
[0301] Generally, when separating sugar molecules by
chromatography, components elute inversely to molecular size so
that the largest molecules elute first. Thus, with respect to a
filtrate of a glucan synthesis reaction, oligosaccharides elute
first, followed by disaccharides, and then monosaccharides.
Separations using a sodium cation resin did not separate fructose
and glucose well, and all of leucrose, sucrose, and DP2 co-eluted.
Use of ion exchange resins where the cation is calcium are
preferred to separate glucose and fructose.
[0302] A filtrate of a glucan synthesis reaction was first prepared
and concentrated to a syrup according to the procedure outline in
Example 1. The composition of this concentrated filtrate is
provided in Table 7.
TABLE-US-00009 TABLE 7 Composition of a Concentrated Filtrate of a
Glucan Synthesis Reaction Sucrose Leucrose Glucose Fructose DP2
DP3+ Total g/L 126 202 93 295 40 65 821 wt % 15.4 24.6 11.3 36.0
4.8 7.9 100
[0303] The syrup of Table 7 was filtered and diluted to 25 g dry
solids/100 g solution with ion-exchanged water, and fed to a column
containing a crosslinked strong acid ion exchange resin in the
calcium form. The physical parameters of this column appear in
Table 8. Diluted syrup (15.8 L) was fed to the column, which was
maintained at 65.degree. C., afterwhich the column was eluted using
water at a flow rate of 30 L/hr.
TABLE-US-00010 TABLE 8 Physical Parameters of the Column Resin Type
FINEX CS11GC Ion form Ca.sup.2+ Crosslinking, % divinyl benzene 5.5
Particle size (mm) 0.34 Bed length (m) 5.0 Column diameter (m)
0.225
[0304] In this separation, leucrose remained in the column longer
than sucrose, perhaps due to complexation of leucrose with the
calcium cation, and in fact, co-eluted with glucose. Two fractions
containing fructose were isolated. Fraction 5.1 eluted between 47
and 120 minutes, and fraction 5.2 eluted between 120 and 172
minutes. Of the fructose fed to the chromatographic separation,
95.7% of the fructose was isolated in >90% purity. The product
distribution in each fraction (5.1 and 5.2) as measured by HPLC
appears in Table 9.
TABLE-US-00011 TABLE 9 Product Distribution of Chromatographic
Fractions Containing Significant Amounts of Fructose % Fruc- tose
Frac- Su- Glu- Fruc- recov- tion crose Leucrose cose tose DP3+
Others Total ered 5.1 31.9 34.8 20.8 3.9 5.4 4.8 100 3.9 5.2 0.0
1.0 0.8 97.7 0.0 0.6 100 95.7
[0305] As the feed composition for this separation comprised 36.0%
fructose, a total of 34.5% of the total stream was recovered as a
fructose syrup with >90 wt % DS fructose. If the sucrose in the
feed is neglected, 40.7% of the sugars were recovered as a fructose
syrup with >90 wt % DS fructose.
[0306] Thus, fructose in a glucan reaction filtrate can be further
enriched through chromatography. Example 6 below demonstrates that
this process can be enhanced using glucan filtrate hydrolyzed with
a transglucosidase.
Example 6
Enrichment of Fructose from a Hydrolyzed Glucan Reaction Filtrate
by Chromatography
[0307] This example demonstrates that fructose isolation from a
glucan filtrate in which the oligosaccharides and leucrose have
been hydrolyzed results in an increased yield of high purity
fructose syrup compared to when isolating fructose from a
non-hydrolyzed glucan filtrate.
[0308] A syrup was prepared by concentrating (vacuum at 50.degree.
C.) a glucan filtrate that had been treated with 1 vol % of
transglucosidase TG L-2000 (SEQ ID NO:1) for 24 hr at 60.degree. C.
and pH 4.5. Some oligosaccharide formation was observed during the
concentration process, which was expected since transglucosidase
enzymes are known to create oligosaccharides at high concentrations
of monosaccharides. The syrup had the final product distribution
described in Table A.
TABLE-US-00012 TABLE A Composition of a Concentrated Glucan
Filtrate that Was Hydrolyzed before Concentration Sucrose Leucrose
Glucose Fructose DP2 DP3+ Total g/L 3 <10 294 409 73 81 ~870 wt
% 0.3 1.1 33.7 47.0 8.4 9.3 100
[0309] The syrup described in Table A was filtered and diluted to
25.4 g DS/100 g solution with ion-exchanged water and was fed to a
column containing a crosslinked strong acid cation exchange resin
in the calcium form. The physical parameters of the column appear
in Table B. Diluted syrup (169 g) was then fed to the column, which
was maintained at 65.degree. C., afterwhich the column was eluted
using water at a flow rate of 50 mL/min.
TABLE-US-00013 TABLE B Physical Parameters of the Column Resin Type
FINEX CS11GC Ion form Ca.sup.2+ Crosslinking, % divinyl benzene 5.5
Particle size (mm) 0.34 Bed length (m) 1.69 Column diameter (m)
0.093
[0310] Two fractions containing fructose were isolated. Fraction
6.1 eluted between 73 and 103 minutes, and fraction 6.2 eluted
between 103 and 120 minutes. Of the fructose fed to the
chromatographic separation, 93.0% of the fructose fed to the column
was isolated in fraction 6.2 in >90% purity. The product
distribution in each fraction (6.1 and 6.2) as measured by HPLC
appears in Table C.
TABLE-US-00014 TABLE C Product Distribution of Chromatographic
Fractions Containing Fructose from a Hydrolyzed Glucan Filtrate %
Fruc- tose Frac- Su- Glu- Fruc- recov- tion crose Leucrose cose
tose DP3+ Others Total ered 6.1 7.7 13.9 63.9 7.3 1.5 5.7 100 5.9
6.2 0.0 0.6 3.0 91.8 0.0 4.6 100 93.0
[0311] The reduced separation efficiency in this example compared
to Example 5 can be attributed to differences in the scale of the
column and the higher glucose fraction of the sample. Even so,
chromatographic purification of this material resulted in an
increased yield of high purity fructose syrup compared to that
achieved in Example 5, in which syrup was chromatographically
prepared from a glucan filtrate that had not been hydrolyzed by a
transglucosidase. As the feed composition for this separation
comprised 47% fructose (Table A), 43.7% of the total stream was
recovered as a fructose syrup with >90 wt % DS fructose. This
43.7% recovery is significantly better than the 34.5% recovery in
Example 5.
[0312] Thus, fructose isolation from a glucan filtrate that has
been hydrolyzed with transglucosidase results in an increased yield
of fructose compared to when isolating fructose from a
non-hydrolyzed glucan filtrate.
Example 7
Production of Ethanol by Fermenting a Filtrate of a Glucan
Synthesis Reaction
[0313] This example discloses yeast fermentation of glucan filtrate
to ethanol.
[0314] Yeast (S. cerevisiae) cream (Tonon mill, Brazil) was washed
by suspending the cream in tap water (2.4 L, optical density of 65
at 600 nm) and then centrifuging the yeast cream for 5 minutes
using a LEGEND XTR centrifuge (Thermo Scientific) at 4500 g. After
decanting the supernatant, the yeast cells were resuspended and
concentrated by centrifugation two additional times. After the
third wash, the pH was adjusted to 2 by addition of 5 wt % sulfuric
acid. The optical density was measured using a GENESYS 20 4001
spectrophotometer (Thermo Scientific) and adjusted to 100 at 600 nm
by addition of tap water. The adjusted yeast cream (1.5 L) was
added to a 7.5-L BIOFLO310 fermenter vessel (New Brunswick). The
fermenter was set to maintain temperature at 30.degree. C. and
agitation at 100 rpm. Although pH was measured during fermentation,
it was not controlled by the addition of acid or base
solutions.
[0315] A feed solution containing yeast extract (10 g/L), peptone
(20 g/L), and 200 g/L of sugars from a glucan filtrate was prepared
and sterilized using a PHOENIX AV-250 PLUS autoclave at 121.degree.
C. for 15 minutes. The feed solution was allowed to cool to
25.degree. C. (room temperature) before the fermentation began. The
sterilized feed solution (3.5 L) was added to the fermenter over
approximately 5 hours at a rate of 684 mL/hr, and the fermentation
was allowed to proceed for 22 hours.
[0316] Periodic samples were taken during the fermentation and
analyzed for optical density using a GENESYS 20 4001
spectrophotometer, Brix using a PAL-3 refractometer (Atago), and
sugar and ethanol concentrations by HPLC (General Methods). These
results are summarized in Table 10.
TABLE-US-00015 TABLE 10 Feed and Time Course Fermentation Profiles
for the First Ethanol Fermentation Time Fruc- Total (hr) Sucrose
Leucrose Glucose tose DP2 DP3+ Sugar EtOH Feed 9 70 19 76 7 19 200
0 0 0.2 0.0 0.0 0.1 -- -- -- 7 1 <1 18 0.3 <1 -- -- -- 15 2
<1 30 0.4 <1 -- -- -- 21 3 <1 40 0.0 <1 -- -- -- 25 4
<1 46 0.0 <1 -- -- -- 28 5 <1 49 0.0 <1 -- -- -- 29 6
<1 53 0.0 <1 -- -- -- 32 8 <1 53 0.0 <1 -- -- -- 33 22
<1 53 0.0 <1 5 18 76 33 Concentrations (g/L) of ethanol
(EtOH) and sugar compounds in the feed and at various fermentation
time points (0-22 hours) are listed.
[0317] When the fermentation was over, the yeast cells were
separated by centrifugation using a LEGEND XTR centrifuge at 4500 g
for 5 minutes. After decanting the supernatant, the yeast were
resuspended and concentrated by centrifugation two additional
times. After the third wash, the pH was adjusted to 2 by addition
of 5 wt % sulfuric acid. The optical density was measured using a
GENESYS 20 4001 spectrophotometer and adjusted to 100 at 600 nm by
addition of tap water. Two additional fermentation cycles, each
using fresh feed, were performed using recycled yeast cells from
the previous fermentation following the same conditions described
above. The fermentation results obtained using first-time and
second-time recycled yeast are provided in Tables 11 and 12,
respectively.
TABLE-US-00016 TABLE 11 Feed and Time Course Fermentation Profiles
Using the First Recycle of Yeast Cells Time Fruc- Total (hr)
Sucrose Leucrose Glucose tose DP2 DP3+ Sugar EtOH Feed 13 69 21 77
7 18 206 0 0 0 4 0 0 -- -- -- 5 1 <1 19 0 <1 -- -- -- 18 4
<1 35 0 <1 -- -- -- 23 4 <1 40 0 <1 -- -- -- 26 5 <1
45 0 <1 -- -- -- 29 6 <1 53 0 <1 -- -- -- 32 7 <1 50 0
<1 -- -- -- 32 7 <1 51 0 <1 -- -- -- 33 21 <1 42 0
<1 6 18 65 37 Concentrations (g/L) of ethanol (EtOH) and sugar
compounds in the feed and at various fermentation time points (0-21
hours) are listed.
TABLE-US-00017 TABLE 12 Feed and Time Course Fermentation Profiles
Using the Second Recycle of Yeast Cells Time Fruc- Total (hr)
Sucrose Leucrose Glucose tose DP2 DP3+ Sugar EtOH Feed 10 70 19 76
6 19 201 0 0 <1 0 0 <1 -- -- -- 11 1 <1 32 0 <1 -- --
-- 24 4 <1 40 0 <1 -- -- -- 29 4 <1 45 0 <1 -- -- -- 31
5 <1 46 0 <1 -- -- -- 33 6 <1 45 0 <1 -- -- -- 34 6
<1 16 0 <1 -- -- -- 48 7 <1 7 0 <1 -- -- -- 52 21 <1
5 0 <1 5 16 27 54 Concentrations (g/L) of ethanol (EtOH) and
sugar compounds in the feed and at various fermentation time points
(0-21 hours) are listed.
[0318] Very little leucrose was consumed in the first fermentation,
although the yeast cells started to acclimate and consume leucrose
by the second recycle. Ethanol fermentation titers increased from
33 g/L (Table 10, 22 hours) to 54 g/L (Table 12, 21 hours) after
three fermentation cycles with recycled yeast, although significant
amounts of leucrose were present in the medium, even after the last
cycle.
[0319] Thus, glucan filtrate can be used in a fermentation process
to produce ethanol.
Example 8
Production of Ethanol by Fermenting Hydrolyzed Glucan Filtrate
[0320] This example demonstrates that fermenting a glucan filtrate
in which the leucrose and oligosaccharide byproduct components have
previously been saccharified results in increased ethanol
yields.
[0321] Fermentations were performed following the procedure
outlined in Example 7, but using a glucan filtrate that was
previously treated with a transglucosidase (TG L-2000, SEQ ID
NO:1). Hydrolyzed glucan filtrate was prepared as follows. Glucan
filtrate was adjusted to 300 g sugars/L and then the pH was
adjusted to 4.0 using 1.0 M sodium hydroxide and 5 wt % sulfuric
acid. The final volume of this preparation was 6.75 L. The filtrate
solution was then sterilized using a PHOENIX AV-250 PLUS autoclave
at 121.degree. C. for 15 minutes, and then the temperature was
adjusted to 60.degree. C. TG L-2000 enzyme extract as described in
Table 4 (135 mL) was mixed with the sterilized filtrate and the
solution was incubated in an incubator-shaker (IKA KS4000) at
60.degree. C. and 100 rpm for 72 hours. Hydrolyzed glucan filtrate
was thus prepared.
[0322] Yeast (S. cerevisiae) cream (Bom Retiro mill, Brazil) was
washed by suspending the cream in tap water (2.4 L, optical density
of 65 at 600 nm) and then centrifuging the yeast cream for 5
minutes using a LEGEND XTR centrifuge at 4500 g. After decanting
the supernatant, the yeast were resuspended and concentrated by
centrifugation two additional times. After the third wash, the pH
was adjusted to 4.5 by addition of 5 wt % sulfuric acid and the
optical density was measured using a GENESYS 20 4001
spectrophotometer and adjusted to 100 at 600 nm by addition of tap
water. The adjusted yeast cream (1.5 L) was added to a 7.5-L
BIOFLO310 fermenter vessel. The fermenter was set to maintain
temperature at 30.degree. C., agitation at 100 rpm, and pH at 4.5
using 4 M aqueous ammonium hydroxide or 5 wt % aqueous sulfuric
acid.
[0323] A feed solution containing yeast extract (10 g/L), peptone
(20 g/L), and 200 g/L of sugars from the hydrolyzed filtrate was
prepared and sterilized using a PHOENIX AV-250 Plus autoclave at
121.degree. C. for 15 minutes. The feed solution was allowed to
cool to 25.degree. C. (room temperature) before the fermentation
began. The sterilized feed solution (3.5 L) was added to the
fermenter over approximately 5 hours at a rate of 684 mL/hr, and
the fermentation was allowed to proceed for 22 hours.
[0324] Periodic samples were taken during the fermentation and
analyzed for optical density using a GENESYS 20 4001
spectrophotometer, Brix using a PAL-3 refractometer, and sugar and
ethanol concentrations by HPLC (General Methods). These results are
summarized in Table 13.
TABLE-US-00018 TABLE 13 Feed and Time Course Fermentation Profiles
for the First Ethanol Fermentation Using Hydrolyzed Glucan Filtrate
Time Fruc- Total (hr) Sucrose Leucrose Glucose tose DP2 DP3+ Sugar
EtOH Feed 7 4 65 97 11 3 186 0 0 0 0 0 0 -- -- -- 7 1 <1 1 <1
<1 -- -- -- 20 2 <1 3 <1 <1 -- -- -- 32 3 <1 4 <1
<1 -- -- -- 40 4 <1 4 <1 <1 -- -- -- 49 5 <1 4 <1
<1 -- -- -- 53 6 <1 5 <1 <1 -- -- -- 55 8 <1 5 <1
<1 -- -- -- 57 22 <1 5 <1 <1 8 3 16 54 Concentrations
(g/L) of ethanol (EtOH) and sugar compounds in the feed and at
various fermentation time points (0-22 hours) are listed.
[0325] When the fermentation was over, the yeast cells were
separated by centrifugation using a LEGEND XTR centrifuge at 4500 g
for 5 minutes. After decanting the supernatant, the yeast cells
were resuspended and concentrated by centrifugation two additional
times. After the third wash, the pH was adjusted to 2 by addition
of 5 wt % sulfuric acid. The optical density was measured using a
GENESYS 20 4001 spectrophotometer and adjusted to 100 at 600 nm by
addition of tap water. Two additional fermentation cycles, each
using fresh feed, were performed using recycled yeast cells from
the previous fermentation following the same conditions described
above. The fermentation results obtained using first-time and
second-time recycled yeast cells are provided in Tables 14 and 15,
respectively.
TABLE-US-00019 TABLE 14 Feed and Time Course Fermentation Profiles
Using the First Recycle of Yeast Cells with Hydrolyzed Glucan
Filtrate Time Fruc- Total (hr) Sucrose Leucrose Glucose tose DP2
DP3+ Sugar EtOH Feed 7 4 69 104 7 4 194 0 0 <1 0 <1 <1 --
-- -- 10 1 <1 7 <1 <1 -- -- -- 25 4 <1 5 <1 <1 --
-- -- 39 4 <1 4 <1 <1 -- -- -- 45 5 <1 5 <1 <1 --
-- -- 51 6 <1 5 <1 <1 -- -- -- 57 6.2 <1 5 <1 <1
-- -- -- 60 7 <1 5 <1 <1 -- -- -- 59 21 <1 5 <1
<1 9 5 19 58 Concentrations (g/L) of ethanol (EtOH) and sugar
compounds in the feed and at various fermentation time points (0-21
hours) are listed.
TABLE-US-00020 TABLE 15 Feed and Time Course Fermentation Profiles
Using the Second Recycle of Yeast Cells with Hydrolyzed Glucan
Filtrate Time Fruc- Total (hr) Sucrose Leucrose Glucose tose DP2
DP3+ Sugar EtOH Feed 7 4 70 105 7 5 197 0 0 0 0 0 0 -- -- -- 10 1
<1 7 <1 <1 -- -- -- 25 3.5 <1 5 <1 <1 -- -- -- 39
4 <1 4 <1 <1 -- -- -- 45 5 <1 5 <1 <1 -- -- -- 51
6 <1 5 <1 <1 -- -- -- 57 6.2 <1 5 <1 <1 -- -- --
60 7 <1 5 <1 <1 -- -- -- 59 21 <1 5 <1 <1 9 5 19
58 Concentrations (g/L) of ethanol (EtOH) and sugar compounds in
the feed and at various fermentation time points (0-21 hours) are
listed.
[0326] All of the fermentations were essentially complete within
about six hours of initiating fermentation, and resulted in ethanol
titers of 57-60.0 g/L. Comparing these fermentations with those in
Example 7 demonstrates that hydrolyzing a glucan filtrate before
subjecting it to fermentation results in faster and greater ethanol
yields than those obtained from fermentations using non-hydrolyzed
glucan filtrate.
[0327] Thus, fermenting a glucan filtrate in which the leucrose and
oligosaccharide byproduct components have been saccharified results
in increased ethanol yields at faster rates. This saccharification
can be done using a transglucosidase, for example.
Example 9
Simultaneous Saccharification and Fermentation of a Glucan Filtrate
Solution
[0328] This example discloses that simultaneous saccharification
and fermentation of a feed containing glucan filtrate can result in
enhanced fermentation properties.
[0329] Yeast (S. cerevisiae) cream (Bom Retiro mill, Brazil) was
washed by suspending the cream in tap water (2.4 L, optical density
of 65 at 600 nm) and then centrifuging the yeast cream for 5
minutes using a LEGEND XTR centrifuge at 4500 g. After decanting
the supernatant, the yeast cells were resuspended and concentrated
by centrifugation two additional times. After the third wash, the
pH was adjusted to 4.5 by addition of 5 wt % sulfuric acid and the
optical density was measured using a GENESYS 20 4001
spectrophotometer and adjusted to 100 at 600 nm by addition of tap
water. The adjusted yeast cream (1.5 L) was added to a 7.5-L
BIOFLO310 fermenter vessel. The fermenter was set to maintain
temperature at 30.degree. C., agitation at 100 rpm, and pH at 4.5
using 4 M aqueous ammonium hydroxide or 5 wt % aqueous sulfuric
acid.
[0330] A feed solution containing yeast extract (10 g/L), peptone
(20 g/L), and 200 g/L of sugars from a glucan filtrate was prepared
and sterilized using a PHOENIX AV-250 PLUS autoclave at 121.degree.
C. for 15 minutes. The feed solution was allowed to cool to
25.degree. C. (room temperature) before the fermentation began. TG
L-2000 transglucosidase enzyme extract as described in Table 4 (1%
v/v) was added to the sterilized feed solution immediately before
adding the solution to the fermenter. The feed solution (3.5 L)
containing TG L-2000 enzyme was added to the fermenter over
approximately 5 hours at 684 mL/hr, and the fermentation was
allowed to proceed for 48 hours.
[0331] Periodic samples were taken during the fermentation and
analyzed for optical density using a GENESYS 20 4001
spectrophotometer, Brix using a PAL-3 refractometer (Atago), and
sugar and ethanol concentrations by HPLC (General Methods). These
results are summarized in Table 16.
TABLE-US-00021 TABLE 16 Feed and Time Course Fermentation Profiles
for Simultaneous Saccharification and Ethanol Fermentation of
Glucan Filtrate Time Fruc- Total (hr) Sucrose Leucrose Glucose tose
DP2 DP3+ Sugar EtOH Feed 7 82 12 79 6 20 206 0 0 0 0 0 0 0 0 0 2 1
<1 13 <1 3 -- -- -- 11 2 <1 21 <1 4 -- -- -- 30 3 <1
21 <1 3 -- -- -- 38 4 <1 20 <1 3 11 16 50 43 5 <1 14
<1 2 -- -- -- 45 6 <1 <1 <1 2 -- -- -- 59 22 <1
<1 <1 1 -- -- -- 62 25 <1 <1 <1 <1 -- -- -- 63 27
<1 <1 <1 <1 -- -- -- 63 31 <1 <1 <1 <1 --
-- -- 57 46 <1 <1 <1 <1 -- -- -- 57 48 <1 <1
<1 <1 1 11 12 62 Concentrations (g/L) of ethanol (EtOH) and
sugar compounds in the feed and at various fermentation time points
(0-48 hours) are listed.
[0332] The fermentation was nominally complete in 6 hours, similar
to the fermentations where the filtrate was hydrolyzed prior to the
fermentation step (Example 8), and gave a slightly superior titer
of ethanol (62 g/L) compared to using unhydrolyzed filtrate
(Example 7). In addition, almost all of the leucrose was consumed
by 6 hours (compare Table 16 with Tables 13-15). In addition to
adding a saccharifying enzyme, such as TG L-2000, to a feed
containing glucan filtrate just prior to fermentation, similar
results should be obtained if the saccharifying enzyme is added to
the fermentation directly.
[0333] Thus, simultaneous saccharification and fermentation of a
feed containing glucan filtrate can result in enhanced fermentation
properties such as increased (i) consumption of glucan filtrate
components (e.g., leucrose) and (ii) ethanol yield and rate of
production.
Example 10
Preparation of Various Alpha-Glucosidases
[0334] This example discloses preparing various alpha-glucosidases
in addition to those alpha-glucosidases (transglucosidase,
glucoamylase, DIAZYME RDF ULTRA) used in some of the foregoing
Examples. These additional alpha-glucosidases were tested for
hydrolytic activity against oligosaccharides comprising alpha-1,5
glucosyl-fructose linkages or alpha-1,3 and/or alpha-1,6
glucosyl-glucose linkages in Examples 11, 12, 15 and 16 provided
below.
Discovery of an Aspergillus clavatus Alpha-Glucosidase
(Aclglu1)
[0335] A strain of Aspergillus clavatus was selected as a potential
source of other enzymes that may be useful in various industrial
applications. One of the genes identified in Aspergillus clavatus
encodes an alpha-glucosidase and the sequence of this gene, called
"Aclglu1", is provided in SEQ ID NO:4. The corresponding protein
encoded by SEQ ID NO:4 is provided in SEQ ID NO:5. Aclglu1 belongs
to Glycosyl hydrolase family 31 based on a PFAM search
(pfam.sanger.ac.uk web link). At the N-terminus, the protein (SEQ
ID NO:5) has a signal peptide with a length of 19 amino acids as
predicted by SignalP version 4.0 (Nordahl Petersen et al., 2011,
Nature Methods, 8:785-786). The presence of a signal sequence
suggests that Aclglu1 is a secreted enzyme. The amino acid sequence
of the predicted mature form of Aclglu1 is set forth as SEQ ID
NO:6.
Expression of Aspergillus clavatus Alpha-Glucosidase Aclglu1
[0336] A synthetic Aclglu1 gene was cloned into pTrex3gM expression
vector (described in U.S. Patent Appl. Publ. No. 2011/0136197,
incorporated herein by reference) and the resulting plasmid was
designated as pJG294. The sequence of the Aclglu1 gene was
confirmed by DNA sequencing.
[0337] Plasmid pJG294 was transformed into a quad deleted
Trichoderma reesei strain (described in WO05/001036) using a
biolistic method (Te'o V S et al., J Microbiol Methods, 51:393-9,
2002). The protein, which was predicted to comprise SEQ ID NO:6,
was secreted into the extracellular medium and filtered culture
medium was used to perform SDS-PAGE and alpha-glucosidase activity
assays to confirm enzyme expression.
Discovery of Neosartorya Fischeri Alpha-Glucosidase Nfiglu1
[0338] A strain of Neosartorya fischeri was selected as a potential
source of other enzymes that may be useful in various industrial
applications. One of the genes identified in Neosartorya fischeri
encodes an alpha-glucosidase and the sequence of this gene, called
"Nfiglu1", is provided in SEQ ID NO:7. The corresponding protein
encoded by SEQ ID NO:7 is provided in SEQ ID NO:8. Nfiglu1 belongs
to Glycosyl hydrolase family 31 based on a PFAM search
(pfam.sanger.ac.uk web link). At the N-terminus, the protein (SEQ
ID NO:8) has a signal peptide with a length of 19 amino acids as
predicted by SignalP version 4.0 (Nordahl Petersen et al., 2011,
Nature Methods, 8:785-786). The presence of a signal sequence
suggests that Nfiglu1 is a secreted enzyme. The amino acid sequence
of the predicted mature form of Nfiglu1 is set forth as SEQ ID NO:
9.
Expression of Neosartorya fischeri Alpha-Glucosidase Nfiglu1
[0339] A synthetic Nfiglu1 gene was cloned into pTrex3gM expression
vector (described in U.S. Patent Appl. Publ. No. 2011/0136197) and
the resulting plasmid was designated as pJG295. The sequence of the
Nfiglu1 gene was confirmed by DNA sequencing.
[0340] Plasmid pJG295 was transformed into a quad deleted
Trichoderma reesei strain (described in WO05/001036) using a
biolistic method (Te'o V S et al., J Microbiol Methods, 51:393-9,
2002). The protein, which was predicted to comprise SEQ ID NO:9,
was secreted into the extracellular medium and filtered culture
medium was used to perform SDS-PAGE and alpha-glucosidase activity
assays to confirm enzyme expression.
Discovery of Neurospora crassa Alpha-Glucosidase Ncrglu1
[0341] A strain of Neurospora crassa was selected as a potential
source of other enzymes that may be useful in various industrial
applications. One of the genes identified in Neurospora crassa
encodes an alpha-glucosidase and the sequence of this gene, called
"Ncrglu1", is provided in SEQ ID NO:10. The corresponding protein
encoded by SEQ ID NO:10 is provided in SEQ ID NO:11. Ncrglu1
belongs to Glycosyl hydrolase family 31 based on a PFAM search
(pfam.sanger.ac.uk web link). At the N-terminus, the protein (SEQ
ID NO:11) has a signal peptide with a length of 22 amino acids as
predicted by SignalP version 4.0 (Nordahl Petersen et al., 2011,
Nature Methods, 8:785-786). The presence of a signal sequence
suggests that Ncrglu1 is a secreted enzyme. The amino acid sequence
of the predicted mature form of Ncrglu1 is set forth as SEQ ID
NO:12.
Expression of Neurospora crassa Alpha-Glucosidase Ncrglu1
[0342] A synthetic Ncrglu1 gene was cloned into pTrex3gM expression
vector (described in U.S. Patent Appl. Publ. No. 2011/0136197) and
the resulting plasmid was designated as pJG296. The sequence of the
Ncrglu1 gene was confirmed by DNA sequencing.
[0343] Plasmid pJG296 was transformed into a quad deleted
Trichoderma reesei strain (described in WO05/001036) using a
biolistic method (Te'o V S et al., J Microbiol Methods, 51:393-399,
2002). The protein, which was predicted to comprise SEQ ID NO:12,
was secreted into the extracellular medium and filtered culture
medium was used to perform SDS-PAGE and alpha-glucosidase activity
assays to confirm enzyme expression.
Discovery of Rasamsonia composticola Alpha-Glucosidase
TauSec098
[0344] A strain of Rasamsonia composticola was selected as a
potential source of other enzymes that may be useful in various
industrial applications. One of the genes identified in Rasamsonia
composticola encodes an alpha-glucosidase and the sequence of this
gene, called "TauSec098", is provided in SEQ ID NO:13. The
corresponding protein encoded by SEQ ID NO:13 is provided in SEQ ID
NO:14. TauSec098 belongs to Glycosyl hydrolase family 31 and
contains an N-terminal CBM 20 domain based on a PFAM search
(pfam.sanger.ac.uk web link). At the N-terminus, the protein (SEQ
ID NO:14) has a signal peptide with a length of 22 amino acids as
predicted by SignalP version 4.0 (Nordahl Petersen et al., 2011,
Nature Methods, 8:785-786). The presence of a signal sequence
suggests that TauSec098 is a secreted enzyme. The amino acid
sequence of the predicted mature form of TauSec098 is set forth as
SEQ ID NO:15.
Expression of Rasamsonia Composticola Alpha-Glucosidase
TauSec098
[0345] A synthetic TauSec098 gene was cloned into the Trichoderma
reesei expression vector pGXT (a pTTT-derived plasmid) by Generay
Biotech Co. (Shanghai, China) and the resulting plasmid was
designated as pGX256-TauSec098. The sequence of the TauSec098 gene
was confirmed by DNA sequencing.
[0346] Plasmid pGX256-TauSec098 was transformed into a quad-deleted
Trichoderma reesei strain (described in WO05/001036) using
protoplast transformation (Te'o et al., J. Microbiol. Methods
51:393-399, 2002). Transformants were selected on a medium
containing acetamide as a sole source of nitrogen (acetamide 0.6
g/L; cesium chloride 1.68 g/L; glucose 20 g/L; potassium dihydrogen
phosphate 15 g/L; magnesium sulfate heptahydrate 0.6 g/L; calcium
chloride dihydrate 0.6 g/L; iron (II) sulfate 5 mg/L; zinc sulfate
1.4 mg/L; cobalt (II) chloride 1 mg/L; manganese (II) sulfate 1.6
mg/L; agar 20 g/L; pH 4.25). Transformed colonies (about 50-100)
appeared in about 1 week. After growth on acetamide plates, the
spores of transformants were collected and transferred into new
acetamide agar plates. After 5 days of growth on acetamide plates,
1.times.10.sup.8 spores were inoculated into 30 ml
Glucose/Sophorose defined media in a 250-mL shake flask. The shake
flask was shook at 28.degree. C. for 5 days. Supernatants from
these cultures were used to confirm expression (SDS PAGE) and
activity of mature TauSec098 enzyme (SEQ ID NO:15).
Discovery of Rasamsonia composticola Alpha-Glucosidase
TauSec099
[0347] A strain of Rasamsonia composticola was selected as a
potential source of other enzymes that may be useful in various
industrial applications. One of the genes identified in Rasamsonia
composticola encodes an alpha-glucosidase and the sequence of this
gene, called "TauSec099", is provided in SEQ ID NO:16. The
corresponding protein encoded by SEQ ID NO:16 is provided in SEQ ID
NO:17. TauSec099 belongs to Glycosyl hydrolase family 31 based on a
PFAM search (pfam.sanger.ac.uk web link). At the N-terminus, the
protein (SEQ ID NO:17) has a signal peptide with a length of 17
amino acids as predicted by SignalP version 4.0 (Nordahl Petersen
et al., 2011, Nature Methods, 8:785-786). The presence of a signal
sequence suggests that TauSec099 is a secreted enzyme. The amino
acid sequence of the predicted mature form of TauSec099 is set
forth as SEQ ID NO:18.
Expression of Rasamsonia composticola Alpha-Glucosidase
TauSec099
[0348] A synthetic TauSec099 gene was cloned into the Trichoderma
reesei expression vector pGXT (a pTTT-derived plasmid) by Generay
Biotech Co. (Shanghai, China) and the resulting plasmid was
designated as pGX256-TauSec099. The sequence of the TauSec0998 gene
was confirmed by DNA sequencing.
[0349] Plasmid pGX256-TauSec099 was transformed into a quad-deleted
Trichoderma reesei strain (described in WO05/001036) using
protoplast transformation (Te'o et al., J. Microbiol. Methods
51:393-399, 2002). Transformants were selected on a medium
containing acetamide as a sole source of nitrogen (acetamide 0.6
g/L; cesium chloride 1.68 g/L; glucose 20 g/L; potassium dihydrogen
phosphate 15 g/L; magnesium sulfate heptahydrate 0.6 g/L; calcium
chloride dihydrate 0.6 g/L; iron (II) sulfate 5 mg/L; zinc sulfate
1.4 mg/L; cobalt (II) chloride 1 mg/L; manganese (II) sulfate 1.6
mg/L; agar 20 g/L; pH 4.25). Transformed colonies (about 50-100)
appeared in about 1 week. After growth on acetamide plates, the
spores of transformants were collected and transferred into new
acetamide agar plates. After 5 days of growth on acetamide plates,
1.times.10.sup.8 spores were inoculated into 30 ml
Glucose/Sophorose defined media in a 250-mL shake flask. The shake
flask was shook at 28.degree. C. for 5 days.
[0350] Supernatants from these cultures were used to confirm
expression (SDS PAGE) and activity of mature TauSec099 enzyme (SEQ
ID NO:18).
Sequences of Bifidobacterium longum Alpha-Glucosidase BloGlu1
[0351] An alpha-glucosidase gene, "BloGlu1", was identified from
Bifidobacterium longum subsp. longum JDM301. The nucleic acid
sequence for the BloGlu1 gene (SEQ ID NO:19, GENBANK Acc. No.
NC014169.1, complement sequence from positions 140600 to 142414)
and the amino acid sequence of the hypothetical protein (SEQ ID
NO:20) encoded by SEQ ID NO:19 were found in GENBANK Acc. No.
YP_003660432.1.
Expression of Bifidobacterium longum Alpha-Glucosidase BloGlu1
[0352] The DNA sequence encoding the entire BloGlu1 protein (SEQ ID
NO:20) was optimized for expression in B. subtilis, then
synthesized (yielding SEQ ID NO:21) and inserted into the p3JM
plasmid by Generay Biotech Co. (Shanghai, China), resulting in
p3JM-BloGlu1. The p3JM-BloGlu1 plasmid contains an aprE promoter to
drive expression of the optimized BloGlu1 sequence (SEQ ID
NO:21).
[0353] Plasmid p3JM-BloGlu1 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express BloGlu1 protein (SEQ ID NO:20).
Sequences of Bifidobacterium longum Alpha-Glucosidase BloGlu2
[0354] An alpha-glucosidase, BloGlu2, was identified from
Bifidobacterium longum. The amino acid sequence (SEQ ID NO:22) of
BloGlu2 was found in the NCBI database (GENBANK Acc. No.
WP_007054665.1).
Expression of Bifidobacterium longum Alpha-Glucosidase BloGlu2
[0355] A DNA sequence encoding BloGlu2 protein was optimized for
expression in B. subtilis, then synthesized (yielding SEQ ID NO:23)
and inserted into the p3JM plasmid by Generay Biotech Co.,
resulting in p3JM-BloGlu2. SEQ ID NO:23 encodes the amino acid
sequence of SEQ ID NO:24. The p3JM-BloGlu2 plasmid contains an aprE
promoter to drive expression of the optimized BloGlu2 sequence (SEQ
ID NO:23).
[0356] Plasmid p3JM-BloGlu2 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express BloGlu2 protein (SEQ ID NO:24).
Sequences of Bifidobacterium longum Alpha-Glucosidase BloGlu3
[0357] An alpha-glucosidase gene, "BloGlu3", was identified from
Bifidobacterium longum subsp. longum F8. The nucleic acid sequence
for the BloGlu3 gene (SEQ ID NO:25, GENBANK Acc. No. NC_021008.1,
positions 2130627 to 2132441), and the amino acid sequence of the
hypothetical protein (SEQ ID NO:26) encoded by SEQ ID NO:25 were
found in GENBANK Acc. No. YP_007768249.1.
Expression of Bifidobacterium longum Alpha-Glucosidase BloGlu3
[0358] The DNA sequence encoding the entire BloGlu3 protein (SEQ ID
NO:26) was optimized for expression in B. subtilis, then
synthesized (yielding SEQ ID NO:27) and inserted into the p3JM
plasmid by Generay Biotech Co., resulting in p3JM-BloGlu3. The
p3JM-BloGlu3 plasmid contains an aprE promoter to drive expression
of the optimized BloGlu3 sequence (SEQ ID NO:27).
[0359] Plasmid p3JM-BloGlu3 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express BloGlu3 protein (SEQ ID NO:26).
Sequences of Bifidobacterium pseudolongum Alpha-Glucosidase
BpsGlu1
[0360] An alpha-glucosidase, BpsGlu1, was identified from
Bifidobacterium pseudolongum. The amino acid sequence (SEQ ID
NO:28) of BpsGlu1 was found in the NCBI database (GENBANK Acc. No.
WP_022858408.1).
Expression of Bifidobacterium pseudolongum Alpha-Glucosidase
BpsGlu1
[0361] A DNA sequence encoding BpsGlu1 protein was optimized for
expression in B. subtilis, then synthesized (yielding SEQ ID NO:29)
and inserted into the p3JM plasmid by Generay Biotech Co.,
resulting in p3JM-BpsGlu1. SEQ ID NO:29 encodes the amino acid
sequence of SEQ ID NO:30. The p3JM-BpsGlu1 plasmid contains an aprE
promoter to drive expression of the optimized BpsGlu1 sequence (SEQ
ID NO:29)
[0362] Plasmid p3JM-BpsGlu1 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express BpsGlu1 protein (SEQ ID NO:30).
Sequences of Bifidobacterium thermophilum Alpha-Glucosidase
BthGlu1
[0363] An alpha-glucosidase gene, "BthGlu1", was identified from
Bifidobacterium 15 thermophilum RBL67. The nucleic acid sequence of
the BthGlu1 gene (SEQ ID NO:31, GENBANK Acc. No. NC_020546.1,
positions 150690 to 152495), and the amino acid sequence of the
hypothetical protein (SEQ ID NO:32) encoded by SEQ ID NO:31 were
found in GENBANK Acc. No. YP_007592840.1.
Expression of Bifidobacterium thermophilum Alpha-Glucosidase
BthGlu1
[0364] The DNA sequence encoding the entire BthGlu1 protein (SEQ ID
NO:32) was optimized for expression in B. subtilis, then
synthesized (yielding SEQ ID NO:33) and inserted into the p3JM
plasmid by Generay Biotech Co., resulting in p3JM-BthGlu1. The
p3JM-BthGlu1 plasmid contains an aprE promoter to drive expression
of the optimized BthGlu1 sequence (SEQ ID NO:33).
[0365] Plasmid p3JM-BthGlu1 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express BthGlu1 protein (SEQ ID NO:32).
Sequences of Bifidobacterium breve Alpha-Glucosidase BbrGlu2
[0366] An alpha-glucosidase, BbrGlu2, was identified from
Bifidobacterium breve. The amino acid sequence (SEQ ID NO:34) of
BbrGlu2 was found in the NCBI database (GENBANK Acc. No.
WP_003827971.1).
Expression of Bifidobacterium breve Alpha-Glucosidase BbrGlu2
[0367] A DNA sequence encoding BbrGlu2 protein was optimized for
expression in B. subtilis, then synthesized (yielding SEQ ID NO:35)
and inserted into the p3JM plasmid by Generay Biotech Co.,
resulting in p3JM-BbrGlu2. SEQ ID NO:35 encodes the amino acid
sequence of SEQ ID NO:36. The p3JM-BbrGlu2 plasmid contains an aprE
promoter to drive expression of the optimized BbrGlu2 sequence (SEQ
ID NO:35)
[0368] Plasmid p3JM-BbrGlu2 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express SEQ ID NO:36.
Sequences of Bifidobacterium breve Alpha-Glucosidase BbrGlu5
[0369] An alpha-glucosidase gene, "BbrGlu5", was identified from
Bifidobacterium breve ACS-071-V-Sch8b. The nucleic acid sequence of
the BbrGlu5 gene (SEQ ID NO:37, GENBANK Acc. No. NC_017218.1,
complement of sequence from positions 2241075 to 2242895), and the
amino acid sequence of the hypothetical protein (SEQ ID NO:38)
encoded by SEQ ID NO:37 were found in GENBANK Acc. No.
YP_005583701.1.
Expression of Bifidobacterium breve Alpha-Glucosidase BbrGlu5
[0370] The DNA sequence encoding the entire BbrGlu5 protein (SEQ ID
NO:38) was optimized for expression in B. subtilis, then
synthesized (yielding SEQ ID NO:39) and inserted into the p3JM
plasmid by Generay Biotech Co., resulting in p3JM-BbrGlu5. The
p3JM-BbrGlu5 plasmid contains an aprE promoter to drive expression
of the optimized BbrGlu5 sequence (SEQ ID NO:39).
[0371] Plasmid p3JM-BbrGlu5 was used to transform B. subtilis cells
(degUHy32, .DELTA.nprB, .DELTA.vpr, .DELTA.epr, .DELTA.scoC,
.DELTA.wprA, .DELTA.mpr, .DELTA.ispA, .DELTA.bpr), and the
transformed cells were spread on Luria Agar plates supplemented
with 5 ppm chloramphenicol. A colony with correct insertion, as
confirmed by PCR and sequencing, was selected and subjected to
fermentation in a 250-mL shake flask with MBD medium (a MOPS-based
defined medium supplemented with an additional 5 mM CaCl.sub.2) to
express BbrGlu5 protein (SEQ ID NO:38).
Purification of Alpha-Glucosidases from Expression Cultures
AclGlu1 and NcrGlu1
[0372] Both AclGlu1 (SEQ ID NO:6) and NcrGlu1 (SEQ ID NO:12)
alpha-glucosidases were purified using two chromatography steps.
For each purification, the crude broth from the shake flask was
concentrated, after which ammonium sulfate was added to a final
concentration of 2 M. The solution was loaded onto a 50-mL phenyl
HP column pre-equilibrated with 20 mM Tris pH 8.0, 2 M ammonium
sulfate. The target protein (SEQ ID NO:6 or SEQ ID NO:12) was
eluted from the column with 1 M ammonium sulfate, 20 mM Tris pH
8.0. Respective fractions were pooled, concentrated and
buffer-exchanged into 20 mM Tris pH 8.0 (buffer A), using a
VIVAFLOW 200 ultrafiltration device (Sartorius Stedim). The
resulting solution was applied to a 40-mL Q HP column
pre-equilibrated with buffer A. The target protein was eluted from
the column with 0.3 M NaCl in buffer A. The fractions containing
target protein were then pooled and concentrated using 10K AMICON
ULTRA-15 devices, and stored in 40% glycerol at -20.degree. C.
until usage.
NfiGlu1
[0373] NfiGlu1 alpha-glucosidase (SEQ ID NO:9) was purified using
two hydrophobic interaction chromatography steps. The crude broth
from the shake flask was concentrated, after which ammonium sulfate
was added to a final concentration of 1 M. The solution was loaded
onto a 50-mL phenyl HP column pre-equilibrated with 20 mM Tris pH
8.0, 1 M ammonium sulfate. The target protein (SEQ ID NO:9) flowed
through the column. Flow-through fractions were pooled, after which
ammonium sulfate was added to a final concentration of 2 M. The
solution was loaded onto the same phenyl HP column pre-equilibrated
with 20 mM Tris pH 8.0, 2 M ammonium sulfate. The target protein
was eluted from the column with 1 M ammonium sulfate, 20 mM Tris pH
8.0. The fractions containing target protein were then pooled and
concentrated using 10K AMICON ULTRA-15 devices, and stored in 40%
glycerol at -20.degree. C. until usage.
TauSec098 and TauSec099
[0374] Both TauSec098 (SEQ ID NO:15) and TauSec099 (SEQ ID NO:18)
alpha-glucosidases were purified via hydrophobic interaction
chromatography. For each purification, ammonium sulphate was added
to about 180 mL of concentrated crude broth from a 7-L fermenter to
a final concentration of 1 M. This solution was then loaded onto a
50-mL HIPREP phenyl-FF Sepharose column (GE Healthcare)
pre-equilibrated with 20 mM sodium acetate pH 5.0.1 M ammonium
sulphate (buffer A). After washing with the same buffer with three
column volumes (CVs), the column was eluted stepwise with 75%, 50%
and 0% buffer A using three CVs each, followed by two CVs of MILLIQ
H.sub.2O. All fractions were analyzed by SDS-PAGE. The target
protein (SEQ ID NO:15 or SEQ ID NO:18) was mainly present in the
flow-through fraction, which was concentrated and buffer-exchanged
to remove excess ammonium sulfate using 10 KDa AMICON ULTRA-15
devices. The final product, which was greater than 90% pure, was
stored in 40% glycerol at -80.degree. C. until usage.
BloGlu1. BloGlu2 and BloGlu3
[0375] BloGlu1 (SEQ ID NO:20), BloGlu2 (SEQ ID NO:24) and BloGlu3
(SEQ ID NO:26) alpha-glucosidases were all purified in three steps.
For each purification, the crude broth from a 1-L DASGIP fermenter
was concentrated, after which ammonium sulfate was added to 60%
saturation. The solution was stirred at 4.degree. C. for 1 hr, and
then centrifuged at 8000.times.g for 30 min. The resulting pellet
was re-suspended in 20 mM Tris pH 8.0 (buffer A). Ammonium sulfate
was added to the resulting solution to a final concentration of 1
M; this preparation was then loaded onto a 40-mL HiPrep.TM. Phenyl
FF column pre-equilibrated with 20 mM Tris pH 8.0, 1 M ammonium
sulfate (buffer B). After washing, the column was eluted stepwise
with 75%, 50%, and 0% buffer B and H.sub.2O in three column volumes
each. All fractions were analyzed using SDS-PAGE and activity
assays. The fractions containing target protein (SEQ ID NO:20, SEQ
ID NO:24, or SEQ ID NO:26) were pooled, concentrated and
subsequently loaded onto a HiLoad.TM. 26/60 Superdex.TM. 75 column
pre-equilibrated with 20 mM sodium phosphate pH 7.0, 0.15 M NaCl.
Flow-through fractions containing the target protein were then
pooled and concentrated using 10K AMICON ULTRA-15 devices, and
stored in 40% glycerol at -20.degree. C. until usage.
BpsGlu1 and BthGlu1
[0376] Both BpsGlu1 (SEQ ID NO:30) and BthGlu1 (SEQ ID NO:32)
alpha-glucosidases were purified in two steps. For each
purification, the crude broth from a 1-L DASGIP fermenter was
concentrated, after which ammonium sulfate was added to 60%
saturation. The solution was stirred at 4.degree. C. for 1 hr, and
then centrifuged at 8000.times.g for 30 min. The resulting pellet
was re-suspended in 20 mM Tris pH 8.0 (buffer A). Ammonium sulfate
was added to the resulting solution to a final concentration of 1
M; this preparation was then loaded onto a 40-mL HiPrep.TM. Phenyl
FF column pre-equilibrated with 20 mM Tris pH 8.0, 1 M ammonium
sulfate (buffer B). After washing, the column was eluted stepwise
with 75%, 50%, and 0% buffer B and H.sub.2O in three column volumes
each. All fractions were analyzed using SDS-PAGE and activity
assays. The target protein (SEQ ID NO:30 or SEQ ID NO:32) was
present in the eluate from the 0% buffer B elution step; this
eluate was pooled and concentrated using 10K AMICON ULTRA-15
devices. The final product, which was greater than 95% pure, was
stored in 40% glycerol at -20.degree. C. until usage.
BbrGlu2 and BbrGlu5
[0377] Both BbrGlu2 (SEQ ID NO:36) and BbrGlu5 (SEQ ID NO:38)
alpha-glucosidases were purified in four steps. For each
purification, the crude broth from a 1-L DASGIP fermenter was
concentrated, after which ammonium sulfate was added to 60%
saturation. The solution was stirred at 4.degree. C. for 1 hr, and
then centrifuged at 8000.times.g for 30 min. The resulting pellet
was re-suspended in 20 mM HEPES pH 7.0 (buffer A). Ammonium sulfate
was added to the resulting solution to a final concentration of 1
M; this preparation was then loaded onto a HiPrep.TM. Phenyl FF
column pre-equilibrated with 20 mM HEPES pH 7.0, 1 M ammonium
sulfate. The target protein (SEQ ID NO:36 or SEQ ID NO:38) was
eluted from the column with 0.5 M ammonium sulfate. Respective
fractions were pooled, concentrated and buffer-exchanged into
buffer A using a VIVAFLOW 200 ultrafiltration device (Sartorius
Stedim). The resulting solution was applied to a HiPrep.TM. Q FF
16/10 column pre-equilibrated with buffer A. Target protein was
eluted from the column with a linear gradient of 0-0.5 M NaCl in
buffer A.
[0378] Fractions containing target protein were pooled,
concentrated and subsequently loaded onto a HiLoad.TM. 26/60
Superdex.TM. 75 column pre-equilibrated with 20 mM HEPES pH 7.0,
0.15 M NaCl. The fractions containing target protein were then
pooled and concentrated using 10K AMICON ULTRA-15 devices, and
stored in 40% glycerol at -20.degree. C. until usage.
[0379] Thus, various additional alpha-glucosidases were expressed
and purified. These alpha-glucosidases were tested for hydrolytic
activity against alpha-1,5 glucosyl-fructose linkages and alpha-1,3
and/or alpha-1,6 glucosyl-glucose linkages in Examples 11, 12, 15
and 16 provided below.
Example 11
Testing Alpha-Glucosidases for Hydrolytic Activity Against Various
Glycosidic Linkages
[0380] This example discloses testing whether alpha-glucosidases
have hydrolytic activity beyond that previously associated with
this class of enzymes (EC 3.2.1.20). Alpha-glucosidases from
Example 10 were shown to have hydrolytic activity against alpha-1,5
glucosyl-fructose linkages and alpha-1,3 and alpha-1,6
glucosyl-glucose linkages.
Substrate Specificity of Alpha-Glucosidases
[0381] The substrate specificity of each alpha-glucosidase
disclosed in Example was assayed based on the release of glucose
from a particular substrate (isomaltose, maltose, panose, leucrose,
or nigerose) when the substrate was incubated with
alpha-glucosidase. The rate of glucose release was measured using a
coupled glucose oxidase/peroxidase (GOX/HRP) method (1980, Anal.
Biochem. 105:389-397). Glucose release was quantified as the rate
of oxidation of 2,2'-azino-bis 3-ethylbenzothiazoline-6-sulfonic
acid (ABTS) by peroxide that was generated from coupled GOX/HRP
enzymes reacted with glucose.
[0382] Individual substrate solutions were prepared by mixing a 9
mL solution of substrate (1% in water, w/v) with 1 mL of 0.5 M pH
5.0 sodium acetate buffer and 40 .mu.L of 0.5 M calcium chloride in
a 15-mL conical tube. Coupled enzyme (GOX/HRP) solution with ABTS
was prepared in 50 mM sodium acetate buffer (pH 5.0), with the
final concentrations of 2.74 mg/mL ABTS, 0.1 U/mL HRP, and 1 U/mL
GOX. Serial dilutions of individual alpha-glucosidase samples and
glucose standard were prepared in MILLIQ water. For nigerose,
alpha-glucosidase samples were tested with only one dosage at 10
ppm due to a limited stock of substrate solutions. Each
alpha-glucosidase sample (10 .mu.L) was transferred into a new
microtiter plate (Corning 3641) containing 90 .mu.L of substrate
solution pre-incubated at 50.degree. C. for 5 min at 600 rpm.
Reactions were carried out at 50.degree. C. for 10 min (for
isomaltose, maltose, panose, and nigerose substrates), or for 60
min (for leucrose substrate) with shaking (600 rpm) in a
THERMOMIXER (Eppendorf). 10 .mu.L of each reaction mix, as well as
10 .mu.L of serial dilutions of glucose standard, were then quickly
transferred to new microtiter plates (Corning 3641), respectively,
to which 90 .mu.L of ABTS/GOX/HRP solution was then added
accordingly. The microtiter plates containing reaction mixes were
immediately measured at 405 nm at 11 second intervals for 5 min
using a SOFTMAX PRO plate reader (Molecular Devices). The output
was the reaction rate, V.sub.o, for each enzyme concentration.
Linear regression was used to determine the slope of the plot
V.sub.o vs. enzyme dose. The specific activity of each
alpha-glucosidase was calculated based on the glucose standard
curve using
Equation 1:
Specific Activity (Unit/mg)=Slope (enzyme)/slope (std).times.1000
(1), [0383] where 1 Unit=1 .mu.mol glucose/min. For nigerose, the
value of the reaction rate with enzyme dosage at 10 ppm was
directly used to indicate enzyme activity.
[0384] Using the foregoing method, the specificity of each
alpha-glucosidase was determined against each substrate. The
activities of an oligo-1,6-glucosidase (purchased from Megazyme,
see Table 4) and a transglucosidase (TG L-2000, see Table 4)
against each substrate were also measured. The results of this
analysis are provided in Table 17.
TABLE-US-00022 TABLE 17 Activity of Various Alpha-Glucosidases
Against Different Substrates SEQ Enzyme Activity (U/mg) as Measured
on: ID Iso- Enzyme NO. maltose Maltose Panose Leucrose
Nigerose.sup.a Oligo-1,6- 118.2 0.0 54.3 1.3 19.6 glucosidase TG
L-2000 1 194.0 235.6 127.7 68.9 254.0 AclGlu1 6 255.7 401.9 180.9
113.7 315.1 NfiGlu1 9 521.2 360.0 126.9 89.4 264.3 NcrGlu1 12 282.7
34.9 15.9 61.6 200.4 TauSec098 15 54.9 123.8 23.8 1.8 305.6
TauSec099 18 244.0 97.7 50.8 70.6 184.8 BloGlu1 20 71.1 66.9 23.1
2.5 165.0 BloGlu2 24 65.9 86.7 19.9 3.5 217.9 BloGlu3 26 120.1
175.5 31.4 9.0 272.6 BspGlu1 30 64.2 247.9 60.8 27.3 254.6 BthGlu1
32 108.3 93.3 21.1 68.4 128.5 BbrGlu2 38 106.6 167.5 26.9 6.1 258.8
BbrGlu5 38 925.8 0.0 279.7 2.8 22.1 .sup.aEach enzyme was used at
one (10 ppm) against nigerose.
[0385] Interestingly, it was found that alpha-glucosidases, besides
exhibiting hydrolytic activity against alpha-1,4 glucosyl-glucose
linkage (maltose), also exhibit hydrolytic activity against
alpha-1,6 glucosyl-glucose linkage (isomaltose), alpha-1,3
glucosyl-glucose linkage (nigerose), and alpha-1,5
glucosyl-fructose linkage (leucrose) (Table 17).
[0386] Thus, alpha-glucosidases have hydrolytic activity beyond
that previously associated with EC 3.2.1.20 enzymes. Specifically,
alpha-glucosidases have hydrolytic activity against alpha-1,5
glucosyl-fructose linkages and alpha-1,3 and alpha-1,6
glucosyl-glucose linkages.
Example 12
Hydrolysis of Leucrose and Oligosaccharides in Glucan Reaction
Filtrate Using Alpha-Glucosidase
[0387] This Example describes using alpha-glucosidase to hydrolyze
leucrose and other oligosaccharides present in filtrate obtained
from a glucan synthesis reaction. Specifically, the effect of
alpha-glucosidases disclosed in Example 10 on the hydrolysis of
leucrose and oligosaccharides DP2, DP3 and HS (higher sugars, DP4+)
in a filtrate of an insoluble glucan (poly alpha-1,3-glucan)
synthesis reaction was studied.
Isolation and Analysis of Oligosaccharides for Testing Against
Alpha-Glucosidase Activity
[0388] First, a concentrated filtrate of a glucan synthesis
reaction was prepared as per Example 1.
[0389] Briefly, oligosaccharides were isolated from the
concentrated filtrate by chromatographic separation, and analyzed
for glycosidic linkage profile. Chromatographic separation
employing a strong acid cation-exchange resin was used to isolate
the oligosaccharide fraction of the concentrated filtrate. The
physical parameters of the column used for this separation were as
follows: FINEX CS11 GC, #227 resin; Na.sup.+ ion form; 5% divinyl
benzene (crosslinking); 0.34 mm particle size; 1.64 m bed length;
0.093 m column diameter.
[0390] In more detail, the concentrated sugar solution (i.e.,
concentrated filtrate) described in Table 3 was filtered and
diluted to 25 g dry solids/100 g solution using tap water. Prior to
addition of this sugar solution to the column resin, the resin was
washed with six bed volumes (BV) of sodium chloride solution (three
BV at 10 wt % sodium chloride followed by three BV at 5 wt % sodium
chloride) to convert the resin to the sodium form. The sugar
solution (0.6 L) was then fed to the column, after which the column
was eluted using water at a flow rate of 50 mL/min. The run
conditions of the chromatographic separation are summarized as
follows: 0.6 L feed size, 25 g dry solids/100 g solution,
65.degree. C. column temperature, 50 mL/min flow rate. An
oligosaccharide solution was eluted between 11 and 21 minutes. A
small amount of salts--indicated by an increase in
conductivity--was eluted at the same time. The oligosaccharide
fraction thus prepared was analyzed by HPLC to determine its
product distribution. In total, the fraction contained >89% of
oligosaccharides containing three or more hexose units and less
than 1.5% of identifiable mono- and di-saccharides. This fraction
was concentrated to a total dry weight of 317 g/L using a thin film
evaporator (LCI Corporation, Charlotte, N.C.) followed by rotary
evaporation with a ROTAVAPOR (R-151; Buchi, New Castle, Del.). The
product distribution of the concentrated fraction as measured by
HPLC appears in Table 18.
TABLE-US-00023 TABLE 18 Product Distribution of Concentrated
Oligosaccharide Fraction Sucrose Leucrose Glucose Fructose DP2 DP3
DP4 DP5 DP6 DP7 Total g/L 0.0 2.5 0.0 0.7 31.5 75.9 101.8 62.1 28.9
15.3 316.7 wt % 0.0 0.8 0.0 0.2 9.9 23.9 32.1 19.8 8.5 4.8 100
Primary Screening of Aloha-Glucosidases on Glucan Oligomer
Hydrolysis
[0391] The activities of eleven different alpha-glucosidases
(Example 10), as well as the activities of two benchmark enzymes,
oligo-1,6-glucosidase (purchased from Megazyme) and
transglucosidase (TG L-2000), were individually evaluated against
the purified oligosaccharide fraction prepared above (Table 18).
Each alpha-glucosidase (dosed at 1 mg/mL) was incubated in a
solution containing oligosaccharide substrates (2.9% dry solids)
and 2 mM calcium chloride at pH 5.0 at 60.degree. C. Each reaction
was quenched after 24 hours of incubation by adding 50 .mu.L of 0.5
M NaOH.
[0392] The oligosaccharide/monosaccharide contents of the quenched
reactions were determined as follows. A sample of each reaction was
diluted 5-fold in water for HPLC analysis. HPLC separation was done
using an Agilent 1200 series HPLC system with an AMINEX HPX-42A
column (300 mm.times.7.8 mm) at 85.degree. C. The sample (10 .mu.L)
was applied to the HPLC column and separated with an isocratic
gradient of MILLI-Q water as the mobile phase at a flow rate of 0.6
mL/min. Oligosaccharide products were detected using a refractive
index detector. The numbers provided in Table 19 below reflect the
average of peak area percentages (from duplication of each sample)
of each DP.sub.n as a fraction of the total from DP1 to DP7.
TABLE-US-00024 TABLE 19 Analysis Glucan Filtrate Oligosaccharides
Following Treatment with Alpha-Glucosidase ##STR00002##
[0393] As indicated with shading in Table 19, the oligosaccharide
content of the reactions generally shifted toward smaller sized
sugars, in comparison with the control reaction ("Blank") in which
there was no enzyme. These results indicate that alpha-glucosidase
can be used to hydrolyze oligosaccharides comprised within a glucan
synthesis reaction and a fraction thereof. Also, given the linkage
profile of the oligosaccharides (Examples 3 and 4), and the
activity of alpha-glucosidase against various glycosidic linkages
in addition to alpha-1,4 linkages (Example 11), it is apparent that
alpha-glucosidase can be used to break down oligosaccharides with
alpha-1,5 glucosyl-fructose linkages and/or alpha-1,3 and alpha-1,6
glucosyl-glucose linkages. The results provided in Table 19 also
suggest that fungal alpha-glucosidases have better hydrolytic
activity towards soluble oligosaccharides compared with the
bacterial alpha-glucosidases.
Confirmation of Alpha-Glucosidase Hydrolytic Activity Toward
Oligosaccharide Products of Glucan Synthesis Reactions
[0394] Reactions were prepared comprising one or two
alpha-glucosidases and a concentrated filtrate obtained from a poly
alpha-1,3-glucan synthesis reaction (Table 3). Alpha-glucosidase
reactions were dosed with enzyme at 4 ppm, or for blends, each
enzyme was used at a 1:1 ratio with a final dosage of 4 ppm. The
concentrated filtrate was loaded in each reaction at 10% dry
solids. Each reaction further comprised 2 mM calcium chloride at pH
5.0, and was carried out at 60.degree. C. or 65.degree. C. The
reactions were quenched by adding 50 .mu.L of 0.5 M NaOH after a
23-hour incubation.
[0395] The oligosaccharide/monosaccharide contents of the quenched
reactions were determined as follows. A sample of each reaction
diluted 25-fold in water for HPLC analysis. HPLC separation was
done using an Agilent 1200 series HPLC system with an AMINEX
HPX-42A column (300 mm.times.7.8 mm) at 85.degree. C. The sample
(10 .mu.L) was applied to the HPLC column and separated with an
isocratic gradient of MILLI-Q water as the mobile phase at a flow
rate of 0.6 mL/min. Oligosaccharide products were detected using a
refractive index detector. The numbers provided in Table 20 below
reflect the average of peak area percentages (from duplication of
each sample) of each DP.sub.n as a fraction of the total. The
results provided in Table 20 generally confirm the activity of
certain alpha-glucosidases as discussed above regarding the results
provided in Table 19.
TABLE-US-00025 TABLE 20 Analysis Glucan Filtrate Sugars Following
Treatment with Alpha-Glucosidase ##STR00003##
[0396] Thus, alpha-glucosidase can be used to hydrolyze leucrose
and other oligosaccharides present in a fraction (e.g., filtrate)
obtained from a glucan synthesis reaction, such as a poly
alpha-1,3-glucan synthesis reaction.
Example 13
[0397] Isolation of Oligomer/Leucrose Fraction from gtf-S/MUT3325
Reaction
[0398] Sucrose (4.50 kg) was dissolved in distilled deionized water
to a final total volume of 9.5 L and the resulting solution was
heated with stirring at 80.degree. C. for 5 minutes and then cooled
to 47.degree. C. With stirring, 500 grams of a crude extract
containing 0.6 g/L of gtf-S enzyme (GTF0459, SEQ ID NO:42) and 15.0
mL of a crude extract containing 10 g/L of mutanase (MUT3325, SEQ
ID NO:47) was added with stirring (see General Methods for enzyme
preparations). The pH of the resulting mixture was immediately
adjusted to between pH 5.5 to pH 6.0 by slowly adding a 1:10 (v/v)
dilution of 37 wt % HCl with stirring. The reaction temperature and
pH were maintained at 47.degree. C. and pH 5.5-6.0, respectively,
until sucrose conversion was >95% per HPLC analysis, after which
the reaction mixture was immediately adjusted to pH 7.0 to 7.5 and
heated to 90.degree. C. for 20 min, then cooled to 25.degree. C.
for immediate filtration to remove particulates and precipitate.
The resulting filtrate was held at 5.degree. C. prior to IEX/SEC
column chromatography using the following resin and conditions:
FINEX CS 11 GC SAC in Ca.sup.2+ form, column i.d=9.3 cm, resin bed
height 1.58 m, T=70.degree. C., flow rate=51 mL/min, linear flow
rate=0.44 m/h, feed size=0.6 L=171 g, feed RI-DS=25.1 g/100 g,
sample interval=3 min. The column fractions collected between 30
min and 67 min were combined, concentrated by evaporation to 66%
dissolved solids and analyzed by HPLC as described in the General
Methods. Table 21 indicates the oligosacharride and monosaccharide
components of the isolated fraction thus prepared.
TABLE-US-00026 TABLE 21 Analysis of Oligomer/Leucrose Fraction from
qtf-S/MUT3325 Reaction ##STR00004##
[0399] In this Example, a glucan synthesis reaction was used to
produce at least one soluble alpha-glucan product. This soluble
product resulted from the concerted action of both a
glucosyltransferase (GTF0459, SEQ ID NO:42) and an
alpha-glucanohydrolase (MUT3325, SEQ ID NO:47) that were both
present in the glucosyltransferase reaction. This Example also
demonstrated the preparation of a chromatographic fraction from the
glucan synthesis reaction.
[0400] This fraction was used in Examples 15 and 16 below to test
the activity of alpha-glucosidases thereupon.
Example 14
Isolation of Oligomer/Leucrose Fraction from Gtf-C Reaction
[0401] Sucrose (4.50 kg) was dissolved in distilled deionized water
to a final total volume of 9.5 L and the resulting solution was
heated with stirring at 80.degree. C. for 5 minutes and then cooled
to 47.degree. C. With stirring, 500 grams of a crude extract
containing 0.41 g/L of gtf-C enzyme (GTF0088BsT1, SEQ ID NO:45) was
added with stirring (see General Methods for enzyme preparation).
The pH of the resulting mixture was immediately adjusted to between
pH 5.5 to pH 6.0 by slowly adding a 1:10 (v/v) dilution of 37 wt %
HCl with stirring. The reaction temperature and pH were maintained
at 47.degree. C. and pH 5.5-6.0, respectively, until sucrose
conversion was >95% per HPLC analysis, after which the reaction
mixture was immediately adjusted to pH 7.0 to 7.5 and heated to
90.degree. C. for 20 min, then cooled to 25.degree. C. for
immediate filtration to remove particulates and precipitate. The
resulting filtrate held at 5.degree. C. prior to IEX/SEC column
chromatography using the following resin and conditions: FINEX CS
11 GC SAC in Ca.sup.2+ form, column i.d=9.3 cm, resin bed height
1.58 m, T=70.degree. C., flow rate=50 mL/min, linear flow rate=0.44
m/h, feed size=0.6 L=171 g, feed RI-DS=25.8 g/100 g, sample
interval=3 min. The column fractions collected between 34 min and
72 min were combined, concentrated by evaporation to 67% dissolved
solids and analyzed by HPLC as described in the General Methods.
Table 22 indicates the oligosacharride and monosaccharide
components of the isolated fraction thus prepared.
TABLE-US-00027 TABLE 22 Analysis of Oligomer/Leucrose Fraction from
Gtf-C Reaction ##STR00005##
[0402] In this Example, a glucan synthesis reaction was used to
produce at least one soluble alpha-glucan product. This Example
also demonstrated the preparation of a chromatographic fraction
from a glucan synthesis reaction that produced a soluble
alpha-glucan product. This fraction was used in Examples 15 and 16
below to test the activity of alpha-glucosidases thereupon.
Example 15
Primary Screening of Alpha-Glucosidases Using Oligomer/Leucrose
Fractions from Gtf-S/MUT3325 and Gtf-C Reactions
[0403] This Example describes using alpha-glucosidase to hydrolyze
leucrose and other oligosaccharides present in chromatographic
fractions obtained from glucan synthesis reactions that produced
soluble alpha-glucan product. Specifically, study was made on the
effect of alpha-glucosidases disclosed in Example 10 on the
hydrolysis of leucrose and oligosaccharides in the fractions
prepared in Examples 13 and 14.
[0404] A total of twelve alpha-glucosidases and two benchmark
enzymes (oligo-1,6-glucosidase and TG L-2000 transglucosidase) were
screened using oligomer/leucrose fractions from gtf-S/MUT3325
(Example 13) and gtf-C (Example 14) reactions as substrate
material. All the enzymes (alpha-glucosidases and benchmark
enzymes) were dosed at equal protein concentrations. Each
alpha-glucosidase (dosed at 100 ppm) was incubated in a solution
containing oligomer/leucrose substrates (10% dry solids) and 2 mM
calcium chloride at pH 5.5 at 47.degree. C. Each reaction was
quenched after 21 hours of incubation by adding 50 .mu.L of 0.5 M
NaOH.
[0405] The oligosaccharide/monosaccharide contents of the quenched
reactions were determined as follows. A sample from each reaction
was centrifuged and supernatant therefrom was diluted 25-fold in
water for HPLC analysis (General Methods). The percentages reported
in Table 23 reflect the average of peak area percentages (from
duplicate analyses of each sample) of each DP.sub.n as a fraction
of the total. The results indicate that the fungal
alpha-glucosidases had better hydrolytic activity towards glucan
oligomers when compared to the bacterial alpha-glucosidases.
TABLE-US-00028 TABLE 23 Sugar Composition Analysis of Primary
Screening of Alpha-Glucosidases Using Oligomer/Leucrose Fractions
from Gtf-S/MUT3325 and Gtf-C reactions ##STR00006##
##STR00007##
[0406] As indicated with shading in Table 23, the oligosaccharide
content of the reactions generally shifted toward smaller sized
sugars, in comparison with the control reactions ("Blank") in which
there was no enzyme. These results indicate that alpha-glucosidase
can be used to hydrolyze oligosaccharides comprised within a glucan
synthesis reaction and a fraction thereof, particularly a
chromatographic fraction of a glucan synthesis reaction that
produced soluble alpha-glucan product. Also, given the linkage
profile of the oligosaccharides (Examples 13 and 14), and the
activity of alpha-glucosidase against various glycosidic linkages
in addition to alpha-1,4 linkages (Example 11), it is apparent that
alpha-glucosidase can be used to break down oligosaccharides with
alpha-1,5 glucosyl-fructose linkages and also likely alpha-1,3 and
alpha-1,6 glucosyl-glucose linkages. The results provided in Table
23 also suggest that fungal alpha-glucosidases have better
hydrolytic activity towards soluble oligosaccharides compared with
the bacterial alpha-glucosidases.
[0407] Thus, alpha-glucosidase can be used to hydrolyze leucrose
and other oligosaccharides present in a fraction (e.g.,
chromatographic fraction) obtained from a glucan synthesis
reaction, such as one that synthesizes a soluble alpha-glucan
product.
Example 16
Select Screening of Alpha-Glucosidases Using Oligomer/Leucrose
Fractions from Gtf-S/MUT3325 and Gtf-C Reactions
[0408] This Example is further to Example 15, describing the use of
alpha-glucosidase to hydrolyze leucrose and other oligosaccharides
present in chromatographic fractions obtained from glucan synthesis
reactions that produced soluble alpha-glucan product.
[0409] Evaluation of alpha-glucosidases that were most active for
hydrolysis of oligomer/leucrose fractions from gtf-S/MUT3325 and
gtf-C reactions (Example 15) was performed by analyzing sugar
compositions resulting in reactions containing enzymes dosed at
equal protein concentrations. Incubations of alpha-glucosidases
(dosed at 4 ppm; for blends, the ratio of the two enzymes was 1:1
and total dosage was 4 ppm) and oligomer/leucrose substrate (10%
ds) were performed at pH 5.5 in the presence of 2 mM calcium
chloride at 60.degree. C. and 65.degree. C., respectively. The
reactions were quenched by adding 50 .mu.L of 0.5 M NaOH after 23
hours of incubation.
[0410] The oligosaccharide/monosaccharide contents of the quenched
reactions were determined as follows. A sample from each reaction
was centrifuged and supernatant therefrom was diluted 25-fold in
water for HPLC analysis (General Methods). The percentages reported
in Table 24 (below) reflect the average of peak area percentages
(from duplicate analyses of each sample) of each DP.sub.n as a
fraction of the total. The results indicate that TauSec098 was
efficacious for hydrolysis of DP2 to DP7 oligomers and TauSec099
outperformed TG L-2000 for leucrose hydrolysis when the incubation
was performed at 65.degree. C. The blends of TauSec098 with
TauSec099 (or TG L-2000) were effective for hydrolysis of oligomers
and leucrose for DP1 production.
[0411] Thus, alpha-glucosidase can be used to hydrolyze leucrose
and other oligosaccharides present in a fraction (e.g.,
chromatographic fraction) obtained from a glucan synthesis
reaction, such as one that synthesizes a soluble alpha-glucan
product.
TABLE-US-00029 TABLE 24 Sugar Composition Analysis of Select
Screening of Alpha-Glucosidases Using Oligomer/Leucrose Fractions
from Gtf-S/MUT3325 and Gtf-C reactions SEQ ID DP7+ DP7 DP6 DP5 DP4
DP3 DP2 Leucrose Glucose Fructose Temp Substrate Enzyme NO (%) (%)
(%) (%) (%) (%) (%) (%) (%) (%) 60.degree. C. oligomer/ TG L-2000 1
2.5 0.4 0.5 0.9 1.9 5.3 22.9 18.4 21.4 25.8 leucrose TauSec098 15
5.4 0.3 0.5 1.0 1.4 2.6 6.3 71.8 0.0 10.7 fraction from TauSec099
18 2.9 0.3 0.5 1.0 1.9 4.7 23.3 21.5 19.7 24.1 Gtf-C reaction
TauSec098 + 15, 18 2.7 0.3 0.5 0.9 1.4 3.3 19.9 34.9 18.2 17.8
TauSec099 TauSec098 + 15, 1 2.7 0.3 0.5 0.8 1.4 4.5 23.7 27.1 18.6
20.3 TG L-2000 Blank 5.2 0.4 0.6 1.2 1.8 3.2 8.3 70.0 0.0 9.2
oligomer/ TG L-2000 1 4.1 0.3 1.2 3.2 8.1 17.2 13.2 0.0 27.9 24.8
leucrose TauSec098 15 3.4 0.2 0.0 0.4 1.1 3.5 12.3 32.3 35.3 11.5
fraction from TauSec099 18 4.2 0.0 1.2 3.2 8.2 17.4 15.3 0.0 25.4
25.1 Gtf-S/ TauSec098 + 15, 18 3.5 0.2 0.4 0.9 2.3 6.2 16.8 21.2
31.7 16.9 MUT3325 TauSec099 reaction TauSec098 + 15, 1 3.2 0.1 0.3
0.7 2.0 6.0 26.0 17.0 29.1 15.6 TG L-2000 Blank 4.6 0.4 1.2 3.2 7.9
17.5 15.1 36.6 0.0 13.5 65.degree. C. oligomer/ TG L-2000 1 2.5 0.3
0.5 1.0 1.8 4.9 24.9 26.0 17.4 20.8 leucrose TauSec098 15 2.8 0.4
0.5 1.0 1.4 2.6 6.6 73.6 0.0 11.1 fraction from TauSec099 18 2.2
0.3 0.4 1.0 2.0 4.9 23.2 17.4 21.6 27.0 Gtf-C reaction TauSec098 +
15, 18 4.5 0.3 0.5 0.9 1.4 3.4 20.3 28.6 20.1 20.1 TauSec099
TauSec098 + 15, 1 5.1 0.3 0.5 0.9 1.2 2.9 21.1 34.4 18.0 15.7 TG
L-2000 Blank 7.0 0.4 0.7 1.3 1.8 3.2 7.9 68.4 0.0 9.4 oligomer/ TG
L-2000 1 2.9 0.2 1.1 3.1 8.1 18.0 11.7 16.5 19.3 19.0 leucrose
TauSec098 15 2.6 0.0 0.1 0.3 0.9 3.3 12.0 33.1 36.6 11.1 fraction
from TauSec099 18 4.4 0.0 1.2 3.1 7.8 16.1 14.4 0.0 27.4 25.5
Gtf-S/ TauSec098 + 15, 18 3.9 0.2 0.4 0.8 2.1 5.7 16.2 19.4 33.7
17.6 MUT3325 TauSec099 reaction TauSec098 + 15, 1 3.7 0.2 0.3 0.7
1.8 5.0 24.9 20.5 29.4 13.6 TG L-2000 Blank 3.1 0.6 1.1 2.5 6.3
13.6 13.0 31.1 17.0 11.8
Sequence CWU 1
1
471965PRTAspergillus niger 1Ser Gln Ser Leu Leu Ser Thr Thr Ala Pro
Ser Gln Pro Gln Phe Thr 1 5 10 15 Ile Pro Ala Ser Ala Asp Val Gly
Ala Gln Leu Ile Ala Asn Ile Asp 20 25 30 Asp Pro Gln Ala Ala Asp
Ala Gln Ser Val Cys Pro Gly Tyr Lys Ala 35 40 45 Ser Lys Val Gln
His Asn Ser Arg Gly Phe Thr Ala Ser Leu Gln Leu 50 55 60 Ala Gly
Arg Pro Cys Asn Val Tyr Gly Thr Asp Val Glu Ser Leu Thr 65 70 75 80
Leu Ser Val Glu Tyr Gln Asp Ser Asp Arg Leu Asn Ile Gln Ile Leu 85
90 95 Pro Thr His Val Asp Ser Thr Asn Ala Ser Trp Tyr Phe Leu Ser
Glu 100 105 110 Asn Leu Val Pro Arg Pro Lys Ala Ser Leu Asn Ala Ser
Val Ser Gln 115 120 125 Ser Asp Leu Phe Val Ser Trp Ser Asn Glu Pro
Ser Phe Asn Phe Lys 130 135 140 Val Ile Arg Lys Ala Thr Gly Asp Ala
Leu Phe Ser Thr Glu Gly Thr 145 150 155 160 Val Leu Val Tyr Glu Asn
Gln Phe Ile Glu Phe Val Thr Ala Leu Pro 165 170 175 Glu Glu Tyr Asn
Leu Tyr Gly Leu Gly Glu His Ile Thr Gln Phe Arg 180 185 190 Leu Gln
Arg Asn Ala Asn Leu Thr Ile Tyr Pro Ser Asp Asp Gly Thr 195 200 205
Pro Ile Asp Gln Asn Leu Tyr Gly Gln His Pro Phe Tyr Leu Asp Thr 210
215 220 Arg Tyr Tyr Lys Gly Asp Arg Gln Asn Gly Ser Tyr Ile Pro Val
Lys 225 230 235 240 Ser Ser Glu Ala Asp Ala Ser Gln Asp Tyr Ile Ser
Leu Ser His Gly 245 250 255 Val Phe Leu Arg Asn Ser His Gly Leu Glu
Ile Leu Leu Arg Ser Gln 260 265 270 Lys Leu Ile Trp Arg Thr Leu Gly
Gly Gly Ile Asp Leu Thr Phe Tyr 275 280 285 Ser Gly Pro Ala Pro Ala
Asp Val Thr Arg Gln Tyr Leu Thr Ser Thr 290 295 300 Val Gly Leu Pro
Ala Met Gln Gln Tyr Asn Thr Leu Gly Phe His Gln 305 310 315 320 Cys
Arg Trp Gly Tyr Asn Asn Trp Ser Asp Leu Ala Asp Val Val Ala 325 330
335 Asn Phe Glu Lys Phe Glu Ile Pro Leu Glu Tyr Ile Trp Thr Asp Ile
340 345 350 Asp Tyr Met His Gly Tyr Arg Asn Phe Asp Asn Asp Gln His
Arg Phe 355 360 365 Ser Tyr Ser Glu Gly Asp Glu Phe Leu Ser Lys Leu
His Glu Ser Gly 370 375 380 Arg Tyr Tyr Val Pro Ile Val Asp Ala Ala
Leu Tyr Ile Pro Asn Pro 385 390 395 400 Glu Asn Ala Ser Asp Ala Tyr
Ala Thr Tyr Asp Arg Gly Ala Ala Asp 405 410 415 Asp Val Phe Leu Lys
Asn Pro Asp Gly Ser Leu Tyr Ile Gly Ala Val 420 425 430 Trp Pro Gly
Tyr Thr Val Phe Pro Asp Trp His His Pro Lys Ala Val 435 440 445 Asp
Phe Trp Ala Asn Glu Leu Val Ile Trp Ser Lys Lys Val Ala Phe 450 455
460 Asp Gly Val Trp Tyr Asp Met Ser Glu Val Ser Ser Phe Cys Val Gly
465 470 475 480 Ser Cys Gly Thr Gly Asn Leu Thr Leu Asn Pro Ala His
Pro Ser Phe 485 490 495 Leu Leu Pro Gly Glu Pro Gly Asp Ile Ile Tyr
Asp Tyr Pro Glu Ala 500 505 510 Phe Asn Ile Thr Asn Ala Thr Glu Ala
Ala Ser Ala Ser Ala Gly Ala 515 520 525 Ser Ser Gln Ala Ala Ala Thr
Ala Thr Thr Thr Ser Thr Ser Val Ser 530 535 540 Tyr Leu Arg Thr Thr
Pro Thr Pro Gly Val Arg Asn Val Glu His Pro 545 550 555 560 Pro Tyr
Val Ile Asn His Asp Gln Glu Gly His Asp Leu Ser Val His 565 570 575
Ala Val Ser Pro Asn Ala Thr His Val Asp Gly Val Glu Glu Tyr Asp 580
585 590 Val His Gly Leu Tyr Gly His Gln Gly Leu Asn Ala Thr Tyr Gln
Gly 595 600 605 Leu Leu Glu Val Trp Ser His Lys Arg Arg Pro Phe Ile
Ile Gly Arg 610 615 620 Ser Thr Phe Ala Gly Ser Gly Lys Trp Ala Gly
His Trp Gly Gly Asp 625 630 635 640 Asn Tyr Ser Lys Trp Trp Ser Met
Tyr Tyr Ser Ile Ser Gln Ala Leu 645 650 655 Ser Phe Ser Leu Phe Asp
Ile Pro Met Phe Gly Ala Asp Thr Cys Gly 660 665 670 Phe Asn Gly Asn
Ser Asp Glu Glu Leu Cys Asn Arg Trp Met Gln Leu 675 680 685 Ser Ala
Phe Phe Pro Phe Tyr Arg Asn His Asn Glu Leu Ser Thr Ile 690 695 700
Pro Gln Glu Pro Tyr Arg Trp Ala Ser Val Ile Glu Ala Thr Lys Ser 705
710 715 720 Ala Met Arg Ile Arg Tyr Ala Ile Leu Pro Tyr Phe Tyr Thr
Leu Phe 725 730 735 Asp Leu Ala His Thr Thr Gly Ser Thr Val Met Arg
Ala Leu Ser Trp 740 745 750 Glu Phe Pro Asn Asp Pro Thr Leu Ala Ala
Val Glu Thr Gln Phe Met 755 760 765 Val Gly Pro Ala Ile Met Val Val
Pro Val Leu Glu Pro Leu Val Asn 770 775 780 Thr Val Lys Gly Val Phe
Pro Gly Val Gly His Gly Glu Val Trp Tyr 785 790 795 800 Asp Trp Tyr
Thr Gln Ala Ala Val Asp Ala Lys Pro Gly Val Asn Thr 805 810 815 Thr
Ile Ser Ala Pro Leu Gly His Ile Pro Val Tyr Val Arg Gly Gly 820 825
830 Asn Ile Leu Pro Met Gln Glu Pro Ala Leu Thr Thr Arg Glu Ala Arg
835 840 845 Gln Thr Pro Trp Ala Leu Leu Ala Ala Leu Gly Ser Asn Gly
Thr Ala 850 855 860 Ser Gly Gln Leu Tyr Leu Asp Asp Gly Glu Ser Ile
Tyr Pro Asn Ala 865 870 875 880 Thr Leu His Val Asp Phe Thr Ala Ser
Arg Ser Ser Leu Arg Ser Ser 885 890 895 Ala Gln Gly Arg Trp Lys Glu
Arg Asn Pro Leu Ala Asn Val Thr Val 900 905 910 Leu Gly Val Asn Lys
Glu Pro Ser Ala Val Thr Leu Asn Gly Gln Ala 915 920 925 Val Phe Pro
Gly Ser Val Thr Tyr Asn Ser Thr Ser Gln Val Leu Phe 930 935 940 Val
Gly Gly Leu Gln Asn Leu Thr Lys Gly Gly Ala Trp Ala Glu Asn 945 950
955 960 Trp Val Leu Glu Trp 965 2599PRTTrichoderma reesei 2Ser Val
Asp Asp Phe Ile Ser Thr Glu Thr Pro Ile Ala Leu Asn Asn 1 5 10 15
Leu Leu Cys Asn Val Gly Pro Asp Gly Cys Arg Ala Phe Gly Thr Ser 20
25 30 Ala Gly Ala Val Ile Ala Ser Pro Ser Thr Ile Asp Pro Asp Tyr
Tyr 35 40 45 Tyr Met Trp Thr Arg Asp Ser Ala Leu Val Phe Lys Asn
Leu Ile Asp 50 55 60 Arg Phe Thr Glu Thr Tyr Asp Ala Gly Leu Gln
Arg Arg Ile Glu Gln 65 70 75 80 Tyr Ile Thr Ala Gln Val Thr Leu Gln
Gly Leu Ser Asn Pro Ser Gly 85 90 95 Ser Leu Ala Asp Gly Ser Gly
Leu Gly Glu Pro Lys Phe Glu Leu Thr 100 105 110 Leu Lys Pro Phe Thr
Gly Asn Trp Gly Arg Pro Gln Arg Asp Gly Pro 115 120 125 Ala Leu Arg
Ala Ile Ala Leu Ile Gly Tyr Ser Lys Trp Leu Ile Asn 130 135 140 Asn
Asn Tyr Gln Ser Thr Val Ser Asn Val Ile Trp Pro Ile Val Arg 145 150
155 160 Asn Asp Leu Asn Tyr Val Ala Gln Tyr Trp Asn Gln Thr Gly Phe
Asp 165 170 175 Leu Trp Glu Glu Val Asn Gly Ser Ser Phe Phe Thr Val
Ala Asn Gln 180 185 190 His Arg Ala Leu Val Glu Gly Ala Thr Leu Ala
Ala Thr Leu Gly Gln 195 200 205 Ser Gly Ser Ala Tyr Ser Ser Val Ala
Pro Gln Val Leu Cys Phe Leu 210 215 220 Gln Arg Phe Trp Val Ser Ser
Gly Gly Tyr Val Asp Ser Asn Ile Asn 225 230 235 240 Thr Asn Glu Gly
Arg Thr Gly Lys Asp Val Asn Ser Val Leu Thr Ser 245 250 255 Ile His
Thr Phe Asp Pro Asn Leu Gly Cys Asp Ala Gly Thr Phe Gln 260 265 270
Pro Cys Ser Asp Lys Ala Leu Ser Asn Leu Lys Val Val Val Asp Ser 275
280 285 Phe Arg Ser Ile Tyr Gly Val Asn Lys Gly Ile Pro Ala Gly Ala
Ala 290 295 300 Val Ala Ile Gly Arg Tyr Ala Glu Asp Val Tyr Tyr Asn
Gly Asn Pro 305 310 315 320 Trp Tyr Leu Ala Thr Phe Ala Ala Ala Glu
Gln Leu Tyr Asp Ala Ile 325 330 335 Tyr Val Trp Lys Lys Thr Gly Ser
Ile Thr Val Thr Ala Thr Ser Leu 340 345 350 Ala Phe Phe Gln Glu Leu
Val Pro Gly Val Thr Ala Gly Thr Tyr Ser 355 360 365 Ser Ser Ser Ser
Thr Phe Thr Asn Ile Ile Asn Ala Val Ser Thr Tyr 370 375 380 Ala Asp
Gly Phe Leu Ser Glu Ala Ala Lys Tyr Val Pro Ala Asp Gly 385 390 395
400 Ser Leu Ala Glu Gln Phe Asp Arg Asn Ser Gly Thr Pro Leu Ser Ala
405 410 415 Leu His Leu Thr Trp Ser Tyr Ala Ser Phe Leu Thr Ala Thr
Ala Arg 420 425 430 Arg Ala Gly Ile Val Pro Pro Ser Trp Ala Asn Ser
Ser Ala Ser Thr 435 440 445 Ile Pro Ser Thr Cys Ser Gly Ala Ser Val
Val Gly Ser Tyr Ser Arg 450 455 460 Pro Thr Ala Thr Ser Phe Pro Pro
Ser Gln Thr Pro Lys Pro Gly Val 465 470 475 480 Pro Ser Gly Thr Pro
Tyr Thr Pro Leu Pro Cys Ala Thr Pro Thr Ser 485 490 495 Val Ala Val
Thr Phe His Glu Leu Val Ser Thr Gln Phe Gly Gln Thr 500 505 510 Val
Lys Val Ala Gly Asn Ala Ala Ala Leu Gly Asn Trp Ser Thr Ser 515 520
525 Ala Ala Val Ala Leu Asp Ala Val Asn Tyr Ala Asp Asn His Pro Leu
530 535 540 Trp Ile Gly Thr Val Asn Leu Glu Ala Gly Asp Val Val Glu
Tyr Lys 545 550 555 560 Tyr Ile Asn Val Gly Gln Asp Gly Ser Val Thr
Trp Glu Ser Asp Pro 565 570 575 Asn His Thr Tyr Thr Val Pro Ala Val
Ala Cys Val Thr Gln Val Val 580 585 590 Lys Glu Asp Thr Trp Gln Ser
595 31477PRTStreptococcus salivarius 3Met Asp Glu Thr Gln Asp Lys
Thr Val Thr Gln Ser Asn Ser Gly Thr 1 5 10 15 Thr Ala Ser Leu Val
Thr Ser Pro Glu Ala Thr Lys Glu Ala Asp Lys 20 25 30 Arg Thr Asn
Thr Lys Glu Ala Asp Val Leu Thr Pro Ala Lys Glu Thr 35 40 45 Asn
Ala Val Glu Thr Ala Thr Thr Thr Asn Thr Gln Ala Thr Ala Glu 50 55
60 Ala Ala Thr Thr Ala Thr Thr Ala Asp Val Ala Val Ala Ala Val Pro
65 70 75 80 Asn Lys Glu Ala Val Val Thr Thr Asp Ala Pro Ala Val Thr
Thr Glu 85 90 95 Lys Ala Glu Glu Gln Pro Ala Thr Val Lys Ala Glu
Val Val Asn Thr 100 105 110 Glu Val Lys Ala Pro Glu Ala Ala Leu Lys
Asp Ser Glu Val Glu Ala 115 120 125 Ala Leu Ser Leu Lys Asn Ile Lys
Asn Ile Asp Gly Lys Tyr Tyr Tyr 130 135 140 Val Asn Glu Asp Gly Ser
His Lys Glu Asn Phe Ala Ile Thr Val Asn 145 150 155 160 Gly Gln Leu
Leu Tyr Phe Gly Lys Asp Gly Ala Leu Thr Ser Ser Ser 165 170 175 Thr
Tyr Ser Phe Thr Pro Gly Thr Thr Asn Ile Val Asp Gly Phe Ser 180 185
190 Ile Asn Asn Arg Ala Tyr Asp Ser Ser Glu Ala Ser Phe Glu Leu Ile
195 200 205 Asp Gly Tyr Leu Thr Ala Asp Ser Trp Tyr Arg Pro Ala Ser
Ile Ile 210 215 220 Lys Asp Gly Val Thr Trp Gln Ala Ser Thr Ala Glu
Asp Phe Arg Pro 225 230 235 240 Leu Leu Met Ala Trp Trp Pro Asn Val
Asp Thr Gln Val Asn Tyr Leu 245 250 255 Asn Tyr Met Ser Lys Val Phe
Asn Leu Asp Ala Lys Tyr Ser Ser Thr 260 265 270 Asp Lys Gln Glu Thr
Leu Lys Val Ala Ala Lys Asp Ile Gln Ile Lys 275 280 285 Ile Glu Gln
Lys Ile Gln Ala Glu Lys Ser Thr Gln Trp Leu Arg Glu 290 295 300 Thr
Ile Ser Ala Phe Val Lys Thr Gln Pro Gln Trp Asn Lys Glu Thr 305 310
315 320 Glu Asn Tyr Ser Lys Gly Gly Gly Glu Asp His Leu Gln Gly Gly
Ala 325 330 335 Leu Leu Tyr Val Asn Asp Ser Arg Thr Pro Trp Ala Asn
Ser Asp Tyr 340 345 350 Arg Arg Leu Asn Arg Thr Ala Thr Asn Gln Thr
Gly Thr Ile Asp Lys 355 360 365 Ser Ile Leu Asp Glu Gln Ser Asp Pro
Asn His Met Gly Gly Phe Asp 370 375 380 Phe Leu Leu Ala Asn Asp Val
Asp Leu Ser Asn Pro Val Val Gln Ala 385 390 395 400 Glu Gln Leu Asn
Gln Ile His Tyr Leu Met Asn Trp Gly Ser Ile Val 405 410 415 Met Gly
Asp Lys Asp Ala Asn Phe Asp Gly Ile Arg Val Asp Ala Val 420 425 430
Asp Asn Val Asp Ala Asp Met Leu Gln Leu Tyr Thr Asn Tyr Phe Arg 435
440 445 Glu Tyr Tyr Gly Val Asn Lys Ser Glu Ala Asn Ala Leu Ala His
Ile 450 455 460 Ser Val Leu Glu Ala Trp Ser Leu Asn Asp Asn His Tyr
Asn Asp Lys 465 470 475 480 Thr Asp Gly Ala Ala Leu Ala Met Glu Asn
Lys Gln Arg Leu Ala Leu 485 490 495 Leu Phe Ser Leu Ala Lys Pro Ile
Lys Glu Arg Thr Pro Ala Val Ser 500 505 510 Pro Leu Tyr Asn Asn Thr
Phe Asn Thr Thr Gln Arg Asp Glu Lys Thr 515 520 525 Asp Trp Ile Asn
Lys Asp Gly Ser Lys Ala Tyr Asn Glu Asp Gly Thr 530 535 540 Val Lys
Gln Ser Thr Ile Gly Lys Tyr Asn Glu Lys Tyr Gly Asp Ala 545 550 555
560 Ser Gly Asn Tyr Val Phe Ile Arg Ala His Asp Asn Asn Val Gln Asp
565 570 575 Ile Ile Ala Glu Ile Ile Lys Lys Glu Ile Asn Pro Lys Ser
Asp Gly 580 585 590 Phe Thr Ile Thr Asp Ala Glu Met Lys Gln Ala Phe
Glu Ile Tyr Asn 595 600 605 Lys Asp Met Leu Ser Ser Asp Lys Lys Tyr
Thr Leu Asn Asn Ile Pro 610 615 620 Ala Ala Tyr Ala Val Met Leu Gln
Asn Met Glu Thr Ile Thr Arg Val 625 630 635 640 Tyr Tyr Gly Asp Leu
Tyr Thr Asp Asp Gly His Tyr Met Glu Thr Lys 645 650 655 Ser Pro Tyr
Tyr Asp Thr Ile Val Asn Leu Met Lys Ser Arg Ile Lys 660 665 670 Tyr
Val Ser Gly Gly Gln Ala Gln Arg Ser Tyr Trp Leu Pro Thr Asp 675 680
685 Gly Lys Met Asp Asn Ser Asp Val Glu Leu Tyr Arg Thr Asn Glu Val
690 695 700 Tyr Thr Ser Val Arg Tyr Gly Lys Asp Ile Met Thr Ala Asn
Asp Thr 705 710 715 720 Glu Gly Ser Lys Tyr Ser Arg Thr Ser Gly Gln
Val Thr Leu Val Ala 725
730 735 Asn Asn Pro Lys Leu Asn Leu Asp Gln Ser Ala Lys Leu Asn Val
Glu 740 745 750 Met Gly Lys Ile His Ala Asn Gln Lys Tyr Arg Ala Leu
Ile Val Gly 755 760 765 Thr Ala Asp Gly Ile Lys Asn Phe Thr Ser Asp
Ala Asp Ala Ile Ala 770 775 780 Ala Gly Tyr Val Lys Glu Thr Asp Ser
Asn Gly Val Leu Thr Phe Gly 785 790 795 800 Ala Asn Asp Ile Lys Gly
Tyr Glu Thr Phe Asp Met Ser Gly Phe Val 805 810 815 Ala Val Trp Val
Pro Val Gly Ala Ser Asp Asn Gln Asp Ile Arg Val 820 825 830 Ala Pro
Ser Thr Glu Ala Lys Lys Glu Gly Glu Leu Thr Leu Lys Ala 835 840 845
Thr Glu Ala Tyr Asp Ser Gln Leu Ile Tyr Glu Gly Phe Ser Asn Phe 850
855 860 Gln Thr Ile Pro Asp Gly Ser Asp Pro Ser Val Tyr Thr Asn Arg
Lys 865 870 875 880 Ile Ala Glu Asn Val Asp Leu Phe Lys Ser Trp Gly
Val Thr Ser Phe 885 890 895 Glu Met Ala Pro Gln Phe Val Ser Ala Asp
Asp Gly Thr Phe Leu Asp 900 905 910 Ser Val Ile Gln Asn Gly Tyr Ala
Phe Ala Asp Arg Tyr Asp Leu Ala 915 920 925 Met Ser Lys Asn Asn Lys
Tyr Gly Ser Lys Glu Asp Leu Arg Asp Ala 930 935 940 Leu Lys Ala Leu
His Lys Ala Gly Ile Gln Ala Ile Ala Asp Trp Val 945 950 955 960 Pro
Asp Gln Ile Tyr Gln Leu Pro Gly Lys Glu Val Val Thr Ala Thr 965 970
975 Arg Thr Asp Gly Ala Gly Arg Lys Ile Ala Asp Ala Ile Ile Asp His
980 985 990 Ser Leu Tyr Val Ala Asn Ser Lys Ser Ser Gly Lys Asp Tyr
Gln Ala 995 1000 1005 Lys Tyr Gly Gly Glu Phe Leu Ala Glu Leu Lys
Ala Lys Tyr Pro 1010 1015 1020 Glu Met Phe Lys Val Asn Met Ile Ser
Thr Gly Lys Pro Ile Asp 1025 1030 1035 Asp Ser Val Lys Leu Lys Gln
Trp Lys Ala Glu Tyr Phe Asn Gly 1040 1045 1050 Thr Asn Val Leu Glu
Arg Gly Val Gly Tyr Val Leu Ser Asp Glu 1055 1060 1065 Ala Thr Gly
Lys Tyr Phe Thr Val Thr Lys Glu Gly Asn Phe Ile 1070 1075 1080 Pro
Leu Gln Leu Thr Gly Lys Glu Lys Val Ile Thr Gly Phe Ser 1085 1090
1095 Ser Asp Gly Lys Gly Ile Thr Tyr Phe Gly Thr Ser Gly Thr Gln
1100 1105 1110 Ala Lys Ser Ala Phe Val Thr Phe Asn Gly Asn Thr Tyr
Tyr Phe 1115 1120 1125 Asp Ala Arg Gly His Met Val Thr Asn Ser Glu
Tyr Ser Pro Asn 1130 1135 1140 Gly Lys Asp Val Tyr Arg Phe Leu Pro
Asn Gly Ile Met Leu Ser 1145 1150 1155 Asn Ala Phe Tyr Ile Asp Ala
Asn Gly Asn Thr Tyr Leu Tyr Asn 1160 1165 1170 Ser Lys Gly Gln Met
Tyr Lys Gly Gly Tyr Thr Lys Phe Asp Val 1175 1180 1185 Ser Glu Thr
Asp Lys Asp Gly Lys Glu Ser Lys Val Val Lys Phe 1190 1195 1200 Arg
Tyr Phe Thr Asn Glu Gly Val Met Ala Lys Gly Val Thr Val 1205 1210
1215 Ile Asp Gly Phe Thr Gln Tyr Phe Gly Glu Asp Gly Phe Gln Ala
1220 1225 1230 Lys Asp Lys Leu Val Thr Phe Lys Gly Lys Thr Tyr Tyr
Phe Asp 1235 1240 1245 Ala His Thr Gly Asn Gly Ile Lys Asp Thr Trp
Arg Asn Ile Asn 1250 1255 1260 Gly Lys Trp Tyr Tyr Phe Asp Ala Asn
Gly Val Ala Ala Thr Gly 1265 1270 1275 Ala Gln Val Ile Asn Gly Gln
Lys Leu Tyr Phe Asn Glu Asp Gly 1280 1285 1290 Ser Gln Val Lys Gly
Gly Val Val Lys Asn Ala Asp Gly Thr Tyr 1295 1300 1305 Ser Lys Tyr
Lys Glu Gly Phe Gly Glu Leu Val Thr Asn Glu Phe 1310 1315 1320 Phe
Thr Thr Asp Gly Asn Val Trp Tyr Tyr Ala Gly Ala Asn Gly 1325 1330
1335 Lys Thr Val Thr Gly Ala Gln Val Ile Asn Gly Gln His Leu Tyr
1340 1345 1350 Phe Asn Ala Asp Gly Ser Gln Val Lys Gly Gly Val Val
Lys Asn 1355 1360 1365 Ala Asp Gly Thr Tyr Ser Lys Tyr Asn Ala Ser
Thr Gly Glu Arg 1370 1375 1380 Leu Thr Asn Glu Phe Phe Thr Thr Gly
Asp Asn Asn Trp Tyr Tyr 1385 1390 1395 Ile Gly Ala Asn Gly Lys Ser
Val Thr Gly Glu Val Lys Ile Gly 1400 1405 1410 Asp Asp Thr Tyr Phe
Phe Ala Lys Asp Gly Lys Gln Val Lys Gly 1415 1420 1425 Gln Thr Val
Ser Ala Gly Asn Gly Arg Ile Ser Tyr Tyr Tyr Gly 1430 1435 1440 Asp
Ser Gly Lys Arg Ala Val Ser Thr Trp Ile Glu Ile Gln Pro 1445 1450
1455 Gly Val Tyr Val Tyr Phe Asp Lys Asn Gly Leu Ala Tyr Pro Pro
1460 1465 1470 Arg Val Leu Asn 1475 43147DNAAspergillus clavatus
4atggccagtc tcgtaggcct tcttgccagt gcttggctcc tcccgtcgac ctacggagcg
60gcggttcact cgtttgctcc tagtacgacg gcaaccgcag cttactcgca gcatactttg
120ccttcgtcca ttgacaatgg ggctcagttg attgccaata tcgatgaccc
cttggcagtg 180aatgcgcagt ccgtttgtcc aggctataag gcctcggatg
tgcaacagac atcacggggt 240ttcaccgcca gcctgcagct tgcgggcgag
ccgtgcaatg cctatgggat tgacgttgac 300tcgctgagtc tctcggtgga
agttctggcg aaggatcgct tgaatatcca gattgtccct 360acccatgtgg
atagctctaa tgcctcttgg tacattcttc cagaggaccg ggtacccaaa
420gcgcaagcat ctgccgacgc ctccgtctct caaagtgact tcgagatcga
gtggtccaat 480gacccctcgt tcaatatcaa gatcatccgg aaggcaactg
gggatgccct gtttgacaca 540gccgattcgg tcttggtctt tcagaatcag
ttcatcgagt ttgtgtctgc tttgcctgag 600ggttataatc tttatggatt
gggggagcgg atggcccagc tgcggcttct gagaaacgct 660accctgacca
cctacgcggc agatgtcgga gacccgattg atgagtatgt gttagaatct
720atgaatcctt gatctcgttg gctcacaatg gaccaatagc aacatctatg
gacagcatcc 780tttctacctc gacacgagat actataccaa agatgccaac
ggctcatatt ctcttgtgaa 840caccgatgat gccgatgcgt ctggagatta
tgagtccttc tcccacggcg tgttcctgag 900aaatgcacat ggacaggagg
ttattctgca gtctcgcaac attacatggc ggacaatcgg 960tggaagcatc
gatttgacct tctactcagg tcccactcag gcagatgtca ccaagagcta
1020ccagctcacc acgattggct tgcctgcgat gcaacagtac agcgcccttg
gtttccatca 1080atgccgctgg ggttaccgca gctggtctga actcgaggaa
gtcgtaaaca cctttgaaca 1140gtttgagatt cccctcgaat atatctggtg
agctcaattc ttcgtaagaa aatatgggct 1200cttggtgtct aacgcatttt
cccaggaccg acattgacta catgcgtggt taccgcgatt 1260tcgataatga
ccaagtccat ttcccctacg atgaaggcga ggagttcctc gacagacttc
1320acaaatcagg gcgtcactgg gtccccatcg tcgactccgc catctacatc
cctaaccctg 1380acaatgcgtc tgacgcgtaa gtcattgtgt cttatttggc
cagcttttca aacagatgct 1440tacagacgtg acttcaggta cgacacctat
gctagaggag ccaaggatga tgttttcatc 1500aagaaccctg atggcagcct
ttatatcgga gctgtatggc ccggattcac agtcttccct 1560gattggcaca
accccaaagc agcggaatgg tggagcaacg agcttgtcac ttggttcgag
1620aaagtgcagt atgatggcat ttggattgac atgagcgaag tctcctcttt
ctgcgttggt 1680agctgcggga caggaaatct gcacctgaac cccgcccacc
caccatttca acttcctggc 1740gagccgggta acattgagta tacctatccc
gaggccttca atgtgaccaa ctccactgaa 1800gctgcttctg cctctgctgc
ctccgccagc cagtcctctg cagctgctgc gacccaaacc 1860gacgtcagct
cgaccacgac ctcgtacttg cggacgacac ccactcctgg tgtccgtgat
1920atcaactatc ccccttacgt gatcaaccat gttcaatctg gccatgatct
cgctgtccat 1980gccatctctc ccaacgccac ccacgtggat ggtgttcagg
agtacgatgt gcacagtctg 2040tggggtcatc agatcctcaa cgccacttat
cagggattgc tcgaggtctt cactgagaag 2100cgacctttca tcatcggccg
atccaccttt gccggctcag ggaaatgggc cggtcactgg 2160ggcggtgata
acaactctag atggggctct atgttccact ccatttcgca ggctctgtcg
2220ttctctctct ttggcattcc catgtttggt gttgatactt gtggcttcaa
tggcaacacc 2280gacgaggaac tctgcaaccg atggatgcag ctatcggcct
tcttcccatt ctaccgaaac 2340cacaacactc tcgcggctct ttcgcaggag
ccctaccggt gggcctccgt cactgaagca 2400gccaagactg ccatgagcat
tcgatatgcc ctcctgccat acttctacac tctgttccac 2460caggcgcaca
ccaccggttc caccgtcatg cgcgccctcg catgggagtt cccgaacgat
2520ccctcccttg ccgccgtcga cacccagttc atggtcggac catccattct
ggtcacgccc 2580gtcctcgagc ctcttgccaa aacagtcaag ggcgtcttcc
ccggcgtcgg caagggtcag 2640gtctggtatg actggtacac ccaggccgct
gtcgacgcca agcccggcgt caacaccacc 2700atcccggccc cgctgggcca
catccccgtc tatgtccgcg gcggcagcat cctgcccatg 2760caggagcccg
ctcttaccac ccgcgacgcc cgcaagaccc cctggtcgct gcttgccgct
2820ctggacggta accagaccgc ctccggccag ctgtacctcg acgacgggag
cagcgtcaac 2880ccgtcttcga ccctcaacgt ggagttcgcg gctacccact
cgagcatcaa ggtctcggcc 2940aagggtgatt ggcgcgagaa gaatagtctg
gatagcgtga ctgttctcgg tgtcgccaag 3000gagcctgccc gcgtcacctt
caaccgccgc agggtccccc ccgagtcggt ggagtataat 3060gcgacctccc
aggttttgac cgtgagcgga ctgcagaagc tgacgccccg cggggcttgg
3120gctgaggatt ggattctgaa gtggtaa 31475990PRTAspergillus clavatus
5Met Ala Ser Leu Val Gly Leu Leu Ala Ser Ala Trp Leu Leu Pro Ser 1
5 10 15 Thr Tyr Gly Ala Ala Val His Ser Phe Ala Pro Ser Thr Thr Ala
Thr 20 25 30 Ala Ala Tyr Ser Gln His Thr Leu Pro Ser Ser Ile Asp
Asn Gly Ala 35 40 45 Gln Leu Ile Ala Asn Ile Asp Asp Pro Leu Ala
Val Asn Ala Gln Ser 50 55 60 Val Cys Pro Gly Tyr Lys Ala Ser Asp
Val Gln Gln Thr Ser Arg Gly 65 70 75 80 Phe Thr Ala Ser Leu Gln Leu
Ala Gly Glu Pro Cys Asn Ala Tyr Gly 85 90 95 Ile Asp Val Asp Ser
Leu Ser Leu Ser Val Glu Val Leu Ala Lys Asp 100 105 110 Arg Leu Asn
Ile Gln Ile Val Pro Thr His Val Asp Ser Ser Asn Ala 115 120 125 Ser
Trp Tyr Ile Leu Pro Glu Asp Arg Val Pro Lys Ala Gln Ala Ser 130 135
140 Ala Asp Ala Ser Val Ser Gln Ser Asp Phe Glu Ile Glu Trp Ser Asn
145 150 155 160 Asp Pro Ser Phe Asn Ile Lys Ile Ile Arg Lys Ala Thr
Gly Asp Ala 165 170 175 Leu Phe Asp Thr Ala Asp Ser Val Leu Val Phe
Gln Asn Gln Phe Ile 180 185 190 Glu Phe Val Ser Ala Leu Pro Glu Gly
Tyr Asn Leu Tyr Gly Leu Gly 195 200 205 Glu Arg Met Ala Gln Leu Arg
Leu Leu Arg Asn Ala Thr Leu Thr Thr 210 215 220 Tyr Ala Ala Asp Val
Gly Asp Pro Ile Asp Asp Asn Ile Tyr Gly Gln 225 230 235 240 His Pro
Phe Tyr Leu Asp Thr Arg Tyr Tyr Thr Lys Asp Ala Asn Gly 245 250 255
Ser Tyr Ser Leu Val Asn Thr Asp Asp Ala Asp Ala Ser Gly Asp Tyr 260
265 270 Glu Ser Phe Ser His Gly Val Phe Leu Arg Asn Ala His Gly Gln
Glu 275 280 285 Val Ile Leu Gln Ser Arg Asn Ile Thr Trp Arg Thr Ile
Gly Gly Ser 290 295 300 Ile Asp Leu Thr Phe Tyr Ser Gly Pro Thr Gln
Ala Asp Val Thr Lys 305 310 315 320 Ser Tyr Gln Leu Thr Thr Ile Gly
Leu Pro Ala Met Gln Gln Tyr Ser 325 330 335 Ala Leu Gly Phe His Gln
Cys Arg Trp Gly Tyr Arg Ser Trp Ser Glu 340 345 350 Leu Glu Glu Val
Val Asn Thr Phe Glu Gln Phe Glu Ile Pro Leu Glu 355 360 365 Tyr Ile
Trp Thr Asp Ile Asp Tyr Met Arg Gly Tyr Arg Asp Phe Asp 370 375 380
385Asn Asp Gln Val His Phe Pro Tyr Asp Glu Gly Glu Glu Phe Leu Asp
390 395 400 Arg Leu His Lys Ser Gly Arg His Trp Val Pro Ile Val Asp
Ser Ala 405 410 415 Ile Tyr Ile Pro Asn Pro Asp Asn Ala Ser Asp Ala
Tyr Asp Thr Tyr 420 425 430 Ala Arg Gly Ala Lys Asp Asp Val Phe Ile
Lys Asn Pro Asp Gly Ser 435 440 445 Leu Tyr Ile Gly Ala Val Trp Pro
Gly Phe Thr Val Phe Pro Asp Trp 450 455 460 465His Asn Pro Lys Ala
Ala Glu Trp Trp Ser Asn Glu Leu Val Thr Trp 470 475 480 Phe Glu Lys
Val Gln Tyr Asp Gly Ile Trp Ile Asp Met Ser Glu Val 485 490 495 Ser
Ser Phe Cys Val Gly Ser Cys Gly Thr Gly Asn Leu His Leu Asn 500 505
510 Pro Ala His Pro Pro Phe Gln Leu Pro Gly Glu Pro Gly Asn Ile Glu
515 520 525 Tyr Thr Tyr Pro Glu Ala Phe Asn Val Thr Asn Ser Thr Glu
Ala Ala 530 535 540 545Ser Ala Ser Ala Ala Ser Ala Ser Gln Ser Ser
Ala Ala Ala Ala Thr 550 555 560 Gln Thr Asp Val Ser Ser Thr Thr Thr
Ser Tyr Leu Arg Thr Thr Pro 565 570 575 Thr Pro Gly Val Arg Asp Ile
Asn Tyr Pro Pro Tyr Val Ile Asn His 580 585 590 Val Gln Ser Gly His
Asp Leu Ala Val His Ala Ile Ser Pro Asn Ala 595 600 605 Thr His Val
Asp Gly Val Gln Glu Tyr Asp Val His Ser Leu Trp Gly 610 615 620
625His Gln Ile Leu Asn Ala Thr Tyr Gln Gly Leu Leu Glu Val Phe Thr
630 635 640 Glu Lys Arg Pro Phe Ile Ile Gly Arg Ser Thr Phe Ala Gly
Ser Gly 645 650 655 Lys Trp Ala Gly His Trp Gly Gly Asp Asn Asn Ser
Arg Trp Gly Ser 660 665 670 Met Phe His Ser Ile Ser Gln Ala Leu Ser
Phe Ser Leu Phe Gly Ile 675 680 685 Pro Met Phe Gly Val Asp Thr Cys
Gly Phe Asn Gly Asn Thr Asp Glu 690 695 700 705Glu Leu Cys Asn Arg
Trp Met Gln Leu Ser Ala Phe Phe Pro Phe Tyr 710 715 720 Arg Asn His
Asn Thr Leu Ala Ala Leu Ser Gln Glu Pro Tyr Arg Trp 725 730 735 Ala
Ser Val Thr Glu Ala Ala Lys Thr Ala Met Ser Ile Arg Tyr Ala 740 745
750 Leu Leu Pro Tyr Phe Tyr Thr Leu Phe His Gln Ala His Thr Thr Gly
755 760 765 Ser Thr Val Met Arg Ala Leu Ala Trp Glu Phe Pro Asn Asp
Pro Ser 770 775 780 785Leu Ala Ala Val Asp Thr Gln Phe Met Val Gly
Pro Ser Ile Leu Val 790 795 800 Thr Pro Val Leu Glu Pro Leu Ala Lys
Thr Val Lys Gly Val Phe Pro 805 810 815 Gly Val Gly Lys Gly Gln Val
Trp Tyr Asp Trp Tyr Thr Gln Ala Ala 820 825 830 Val Asp Ala Lys Pro
Gly Val Asn Thr Thr Ile Pro Ala Pro Leu Gly 835 840 845 His Ile Pro
Val Tyr Val Arg Gly Gly Ser Ile Leu Pro Met Gln Glu 850 855 860
865Pro Ala Leu Thr Thr Arg Asp Ala Arg Lys Thr Pro Trp Ser Leu Leu
870 875 880 Ala Ala Leu Asp Gly Asn Gln Thr Ala Ser Gly Gln Leu Tyr
Leu Asp 885 890 895 Asp Gly Ser Ser Val Asn Pro Ser Ser Thr Leu Asn
Val Glu Phe Ala 900 905 910 Ala Thr His Ser Ser Ile Lys Val Ser Ala
Lys Gly Asp Trp Arg Glu 915 920 925 Lys Asn Ser Leu Asp Ser Val Thr
Val Leu Gly Val Ala Lys Glu Pro 930 935 940 945Ala Arg Val Thr Phe
Asn Arg Arg Arg Val Pro Pro Glu Ser Val Glu 950 955 960 Tyr Asn Ala
Thr Ser Gln Val Leu Thr Val Ser Gly Leu Gln Lys Leu 965 970 975 Thr
Pro Arg Gly Ala Trp Ala Glu Asp Trp Ile Leu Lys Trp 980 985 990
6971PRTAspergillus clavatus 6Ala Ala Val His Ser Phe Ala Pro Ser
Thr Thr Ala Thr Ala Ala Tyr 1 5 10 15 Ser Gln His Thr Leu Pro Ser
Ser Ile Asp Asn Gly Ala Gln Leu Ile 20 25 30 Ala Asn Ile Asp Asp
Pro Leu Ala Val Asn Ala Gln Ser Val Cys Pro 35 40 45 Gly Tyr Lys
Ala Ser Asp Val Gln Gln Thr Ser Arg Gly Phe Thr Ala 50 55
60 Ser Leu Gln Leu Ala Gly Glu Pro Cys Asn Ala Tyr Gly Ile Asp Val
65 70 75 80 Asp Ser Leu Ser Leu Ser Val Glu Val Leu Ala Lys Asp Arg
Leu Asn 85 90 95 Ile Gln Ile Val Pro Thr His Val Asp Ser Ser Asn
Ala Ser Trp Tyr 100 105 110 Ile Leu Pro Glu Asp Arg Val Pro Lys Ala
Gln Ala Ser Ala Asp Ala 115 120 125 Ser Val Ser Gln Ser Asp Phe Glu
Ile Glu Trp Ser Asn Asp Pro Ser 130 135 140 Phe Asn Ile Lys Ile Ile
Arg Lys Ala Thr Gly Asp Ala Leu Phe Asp 145 150 155 160 Thr Ala Asp
Ser Val Leu Val Phe Gln Asn Gln Phe Ile Glu Phe Val 165 170 175 Ser
Ala Leu Pro Glu Gly Tyr Asn Leu Tyr Gly Leu Gly Glu Arg Met 180 185
190 Ala Gln Leu Arg Leu Leu Arg Asn Ala Thr Leu Thr Thr Tyr Ala Ala
195 200 205 Asp Val Gly Asp Pro Ile Asp Asp Asn Ile Tyr Gly Gln His
Pro Phe 210 215 220 Tyr Leu Asp Thr Arg Tyr Tyr Thr Lys Asp Ala Asn
Gly Ser Tyr Ser 225 230 235 240 Leu Val Asn Thr Asp Asp Ala Asp Ala
Ser Gly Asp Tyr Glu Ser Phe 245 250 255 Ser His Gly Val Phe Leu Arg
Asn Ala His Gly Gln Glu Val Ile Leu 260 265 270 Gln Ser Arg Asn Ile
Thr Trp Arg Thr Ile Gly Gly Ser Ile Asp Leu 275 280 285 Thr Phe Tyr
Ser Gly Pro Thr Gln Ala Asp Val Thr Lys Ser Tyr Gln 290 295 300 Leu
Thr Thr Ile Gly Leu Pro Ala Met Gln Gln Tyr Ser Ala Leu Gly 305 310
315 320 Phe His Gln Cys Arg Trp Gly Tyr Arg Ser Trp Ser Glu Leu Glu
Glu 325 330 335 Val Val Asn Thr Phe Glu Gln Phe Glu Ile Pro Leu Glu
Tyr Ile Trp 340 345 350 Thr Asp Ile Asp Tyr Met Arg Gly Tyr Arg Asp
Phe Asp Asn Asp Gln 355 360 365 Val His Phe Pro Tyr Asp Glu Gly Glu
Glu Phe Leu Asp Arg Leu His 370 375 380 Lys Ser Gly Arg His Trp Val
Pro Ile Val Asp Ser Ala Ile Tyr Ile 385 390 395 400 Pro Asn Pro Asp
Asn Ala Ser Asp Ala Tyr Asp Thr Tyr Ala Arg Gly 405 410 415 Ala Lys
Asp Asp Val Phe Ile Lys Asn Pro Asp Gly Ser Leu Tyr Ile 420 425 430
Gly Ala Val Trp Pro Gly Phe Thr Val Phe Pro Asp Trp His Asn Pro 435
440 445 Lys Ala Ala Glu Trp Trp Ser Asn Glu Leu Val Thr Trp Phe Glu
Lys 450 455 460 Val Gln Tyr Asp Gly Ile Trp Ile Asp Met Ser Glu Val
Ser Ser Phe 465 470 475 480 Cys Val Gly Ser Cys Gly Thr Gly Asn Leu
His Leu Asn Pro Ala His 485 490 495 Pro Pro Phe Gln Leu Pro Gly Glu
Pro Gly Asn Ile Glu Tyr Thr Tyr 500 505 510 Pro Glu Ala Phe Asn Val
Thr Asn Ser Thr Glu Ala Ala Ser Ala Ser 515 520 525 Ala Ala Ser Ala
Ser Gln Ser Ser Ala Ala Ala Ala Thr Gln Thr Asp 530 535 540 Val Ser
Ser Thr Thr Thr Ser Tyr Leu Arg Thr Thr Pro Thr Pro Gly 545 550 555
560 Val Arg Asp Ile Asn Tyr Pro Pro Tyr Val Ile Asn His Val Gln Ser
565 570 575 Gly His Asp Leu Ala Val His Ala Ile Ser Pro Asn Ala Thr
His Val 580 585 590 Asp Gly Val Gln Glu Tyr Asp Val His Ser Leu Trp
Gly His Gln Ile 595 600 605 Leu Asn Ala Thr Tyr Gln Gly Leu Leu Glu
Val Phe Thr Glu Lys Arg 610 615 620 Pro Phe Ile Ile Gly Arg Ser Thr
Phe Ala Gly Ser Gly Lys Trp Ala 625 630 635 640 Gly His Trp Gly Gly
Asp Asn Asn Ser Arg Trp Gly Ser Met Phe His 645 650 655 Ser Ile Ser
Gln Ala Leu Ser Phe Ser Leu Phe Gly Ile Pro Met Phe 660 665 670 Gly
Val Asp Thr Cys Gly Phe Asn Gly Asn Thr Asp Glu Glu Leu Cys 675 680
685 Asn Arg Trp Met Gln Leu Ser Ala Phe Phe Pro Phe Tyr Arg Asn His
690 695 700 Asn Thr Leu Ala Ala Leu Ser Gln Glu Pro Tyr Arg Trp Ala
Ser Val 705 710 715 720 Thr Glu Ala Ala Lys Thr Ala Met Ser Ile Arg
Tyr Ala Leu Leu Pro 725 730 735 Tyr Phe Tyr Thr Leu Phe His Gln Ala
His Thr Thr Gly Ser Thr Val 740 745 750 Met Arg Ala Leu Ala Trp Glu
Phe Pro Asn Asp Pro Ser Leu Ala Ala 755 760 765 Val Asp Thr Gln Phe
Met Val Gly Pro Ser Ile Leu Val Thr Pro Val 770 775 780 Leu Glu Pro
Leu Ala Lys Thr Val Lys Gly Val Phe Pro Gly Val Gly 785 790 795 800
Lys Gly Gln Val Trp Tyr Asp Trp Tyr Thr Gln Ala Ala Val Asp Ala 805
810 815 Lys Pro Gly Val Asn Thr Thr Ile Pro Ala Pro Leu Gly His Ile
Pro 820 825 830 Val Tyr Val Arg Gly Gly Ser Ile Leu Pro Met Gln Glu
Pro Ala Leu 835 840 845 Thr Thr Arg Asp Ala Arg Lys Thr Pro Trp Ser
Leu Leu Ala Ala Leu 850 855 860 Asp Gly Asn Gln Thr Ala Ser Gly Gln
Leu Tyr Leu Asp Asp Gly Ser 865 870 875 880 Ser Val Asn Pro Ser Ser
Thr Leu Asn Val Glu Phe Ala Ala Thr His 885 890 895 Ser Ser Ile Lys
Val Ser Ala Lys Gly Asp Trp Arg Glu Lys Asn Ser 900 905 910 Leu Asp
Ser Val Thr Val Leu Gly Val Ala Lys Glu Pro Ala Arg Val 915 920 925
Thr Phe Asn Arg Arg Arg Val Pro Pro Glu Ser Val Glu Tyr Asn Ala 930
935 940 Thr Ser Gln Val Leu Thr Val Ser Gly Leu Gln Lys Leu Thr Pro
Arg 945 950 955 960 Gly Ala Trp Ala Glu Asp Trp Ile Leu Lys Trp 965
970 73158DNANeosartorya fischeri 7atggccagcc tcctgggcct cgtcgccagt
gcttggctcc tccccacggc ctatggtgca 60agccattcgc ttgcgcctag cacgtccgca
acctcagcac acgcgcaata cactttacca 120tcttctattg acgttggtgc
tcaattggtc gccaacatcg acgatcccct tgccgtcgac 180gcacagtctg
tgtgtccggg ctacaaagcc tcaaatgtgc accagacatc ccaaggtttc
240accgccagcc tacagctcgc gggcgaccca tgcaacgtgt acgggacaga
cgttgattcg 300ctgtctctga cagtggatta tctggccaag gaccgcctga
acatccaaat tgttcctacc 360tacgtggatg cctccaacgc ttcttggtac
ctcctctcgg aagacttggt gccccgggct 420caaggctctg gcgtgtccgc
ctctcaaagc gactttgatg tgaagtggtc caatgagcct 480tctttcaacc
tcaaggtcat tcgcaaggct actggagacg tcctcttcga taccgagggc
540tccgtcctgg tctttgagaa ccagtttatc gagtttgtct cttcgttgcc
cgagggttac 600aacctgtacg gtttgggaga gcgcatggcc cagctgcggc
tcttgagaaa cgcgaccctg 660accacctatg cagcggatgt gggagacccg
attgataggt atgttgctga ccatggttga 720aacctaatgt acgaagtcga
caagcttaca atcggctctc cagcaacatc tatggacagc 780atccgttcta
tctcgacact agatactata ctaaaggcac gaatgggtct tactcgcttg
840tcaacacgga cgaggcggac ttgtcggagg attatgaatc attctcccac
ggtgtctttc 900tgagaaactc tcatggtcag gaggttcttc tgcaaccccg
caacatcacc tggcgcacaa 960ttggtggtag catcgatttg actttctact
ccggtcccac gcaagcggac gtcacaaaga 1020gctaccagct ctccaccatt
ggacttcctg caatgcagca gtacagcacc cttggattcc 1080accaatgccg
ctggggctac cagaattggt ctcagctcga ggaagtggtc aacaactttg
1140agcgatttga gattcccctg gaatacatct ggtcagtctg atttctgagt
ttatacatat 1200ttcccagttc cttttattta cattccttcc aggagcgaca
tcgattacat gcttggctac 1260cgtgactttg agaatgatcc cgaacggttc
tcctacgatg aaggcgagga atttctgaac 1320aaacttcaca agtcgggacg
acactacgtt cctatcgttg actcggcaat ctatattccc 1380aaccccgaca
atgcatcgga tgcgtaagtc cttgttatct tatcctcctt gttagatggt
1440caagttctca cgaacgtttg aattccaggt acgagcctta tgctcgcggg
gcaaaggatg 1500acgttttcat caagaaccct gatggcaccc tctacatcgg
tgcagtgtgg ccgggcttta 1560ctgtcttccc agattggctc aaccccaagg
catttgacta ctgggccaac gaactcgtca 1620tctggtcaaa gaaggttgcg
ttcgatggca tctggattga tatgagcgaa gtatcctctt 1680tctgcgttgg
cagctgtgga acaggaaagc tacatctgaa cccggttcac ccaccattcc
1740agcttcccgg tgaacctgga aatatcggct acgactaccc cgaggccttc
aacgtgacga 1800actctaccga agcggcctct gcctccgccg cctctgccag
tcaggcttcg gctgctgctg 1860ctacccaaac cgccactacg tcaacatcta
catcgtatct gcggacgacg cccacgccgg 1920gcgtccgtga cgtcaactac
cctccatatg tgattaatca tgttcaggag ggtcatgacc 1980ttgccgttca
cgccatttct cccaactcta ctcatgcgga cggcgtccag gaatacgatg
2040ttcacagtct gtggggccac cagatcctca atgccaccta ctacggactg
cgccaggtct 2100tcactgagaa gcgacccttc atcattggtc ggtctacctt
tgctggctcg ggcaagtggg 2160ccggtcactg gggcggtgat aacaactcca
aatgggggtc catgttcctg tccatctcgc 2220agggtctgtc gttctcgctg
ttcggtattc ccatgttcgg cgtggatacc tgcggtttca 2280acggtaacac
cgacgaggag ctctgcagcc ggtggatgca gctgtcggcc ttcttcccct
2340tctaccgcaa ccacaatgtc cttggggcta tcccccagga gccctaccgt
tgggcctctg 2400tcacccaagc ctccaaggct gccatgaaga tccgctattc
catcctacct tacttctaca 2460ctcttttcca ccaggcccac accactggct
ctaccgtcat gcgcgctctc gcctgggagt 2520tccccacgga cccgtccctc
gccgccgtcg acacccagtt catggtcggt ccttccatca 2580tggtcgtccc
cgtgctcgag cccctcgccg ataccgtcaa gggcgcgttc ccaggcgtcg
2640gcaaaggcga agtctggtac gactggtaca cccagaccgc cgtagacgcc
aaacccggcg 2700tcaacaccac cattcccgct ccgctgggcc acattcccgt
ctatgtccgt ggaggcagca 2760tcctgcccat gcaggaaccc gccctcacga
ccagagacgc ccgtaacact ccctggtcgc 2820tactcgtcgc tctgagcggc
aaccagactg cctcgggctc gctgtatctc gacgacggaa 2880ccagcctcaa
cccgtcccgc actctcgatg tcgacttcca ggctaccgcc tggagcatca
2940aggtctcggt caagggtacc tgggaggaga agaaccgcct ggataaggtg
actgtcctcg 3000gcgtgggtga gaagccttcc gctgtgacgt tcaacggccg
caacgtccac cctggctcgg 3060tgcactacaa tgctacctcc aaggtgctgt
ctgtgcaggg attgcacagc atgacgcccc 3120atggcgcctg ggctggaaac
tgggttctga aatggtag 31588988PRTNeosartorya fischeri 8Met Ala Ser
Leu Leu Gly Leu Val Ala Ser Ala Trp Leu Leu Pro Thr 1 5 10 15 Ala
Tyr Gly Ala Ser His Ser Leu Ala Pro Ser Thr Ser Ala Thr Ser 20 25
30 Ala His Ala Gln Tyr Thr Leu Pro Ser Ser Ile Asp Val Gly Ala Gln
35 40 45 Leu Val Ala Asn Ile Asp Asp Pro Leu Ala Val Asp Ala Gln
Ser Val 50 55 60 Cys Pro Gly Tyr Lys Ala Ser Asn Val His Gln Thr
Ser Gln Gly Phe 65 70 75 80 Thr Ala Ser Leu Gln Leu Ala Gly Asp Pro
Cys Asn Val Tyr Gly Thr 85 90 95 Asp Val Asp Ser Leu Ser Leu Thr
Val Asp Tyr Leu Ala Lys Asp Arg 100 105 110 Leu Asn Ile Gln Ile Val
Pro Thr Tyr Val Asp Ala Ser Asn Ala Ser 115 120 125 Trp Tyr Leu Leu
Ser Glu Asp Leu Val Pro Arg Ala Gln Gly Ser Gly 130 135 140 Val Ser
Ala Ser Gln Ser Asp Phe Asp Val Lys Trp Ser Asn Glu Pro 145 150 155
160 Ser Phe Asn Leu Lys Val Ile Arg Lys Ala Thr Gly Asp Val Leu Phe
165 170 175 Asp Thr Glu Gly Ser Val Leu Val Phe Glu Asn Gln Phe Ile
Glu Phe 180 185 190 Val Ser Ser Leu Pro Glu Gly Tyr Asn Leu Tyr Gly
Leu Gly Glu Arg 195 200 205 Met Ala Gln Leu Arg Leu Leu Arg Asn Ala
Thr Leu Thr Thr Tyr Ala 210 215 220 Ala Asp Val Gly Asp Pro Ile Asp
Ser Asn Ile Tyr Gly Gln His Pro 225 230 235 240 Phe Tyr Leu Asp Thr
Arg Tyr Tyr Thr Lys Gly Thr Asn Gly Ser Tyr 245 250 255 Ser Leu Val
Asn Thr Asp Glu Ala Asp Leu Ser Glu Asp Tyr Glu Ser 260 265 270 Phe
Ser His Gly Val Phe Leu Arg Asn Ser His Gly Gln Glu Val Leu 275 280
285 Leu Gln Pro Arg Asn Ile Thr Trp Arg Thr Ile Gly Gly Ser Ile Asp
290 295 300 Leu Thr Phe Tyr Ser Gly Pro Thr Gln Ala Asp Val Thr Lys
Ser Tyr 305 310 315 320 Gln Leu Ser Thr Ile Gly Leu Pro Ala Met Gln
Gln Tyr Ser Thr Leu 325 330 335 Gly Phe His Gln Cys Arg Trp Gly Tyr
Gln Asn Trp Ser Gln Leu Glu 340 345 350 Glu Val Val Asn Asn Phe Glu
Arg Phe Glu Ile Pro Leu Glu Tyr Ile 355 360 365 Trp Ser Asp Ile Asp
Tyr Met Leu Gly Tyr Arg Asp Phe Glu Asn Asp 370 375 380 Pro Glu Arg
Phe Ser Tyr Asp Glu Gly Glu Glu Phe Leu Asn Lys Leu 385 390 395 400
His Lys Ser Gly Arg His Tyr Val Pro Ile Val Asp Ser Ala Ile Tyr 405
410 415 Ile Pro Asn Pro Asp Asn Ala Ser Asp Ala Tyr Glu Pro Tyr Ala
Arg 420 425 430 Gly Ala Lys Asp Asp Val Phe Ile Lys Asn Pro Asp Gly
Thr Leu Tyr 435 440 445 Ile Gly Ala Val Trp Pro Gly Phe Thr Val Phe
Pro Asp Trp Leu Asn 450 455 460 Pro Lys Ala Phe Asp Tyr Trp Ala Asn
Glu Leu Val Ile Trp Ser Lys 465 470 475 480 Lys Val Ala Phe Asp Gly
Ile Trp Ile Asp Met Ser Glu Val Ser Ser 485 490 495 Phe Cys Val Gly
Ser Cys Gly Thr Gly Lys Leu His Leu Asn Pro Val 500 505 510 His Pro
Pro Phe Gln Leu Pro Gly Glu Pro Gly Asn Ile Gly Tyr Asp 515 520 525
Tyr Pro Glu Ala Phe Asn Val Thr Asn Ser Thr Glu Ala Ala Ser Ala 530
535 540 Ser Ala Ala Ser Ala Ser Gln Ala Ser Ala Ala Ala Ala Thr Gln
Thr 545 550 555 560 Ala Thr Thr Ser Thr Ser Thr Ser Tyr Leu Arg Thr
Thr Pro Thr Pro 565 570 575 Gly Val Arg Asp Val Asn Tyr Pro Pro Tyr
Val Ile Asn His Val Gln 580 585 590 Glu Gly His Asp Leu Ala Val His
Ala Ile Ser Pro Asn Ser Thr His 595 600 605 Ala Asp Gly Val Gln Glu
Tyr Asp Val His Ser Leu Trp Gly His Gln 610 615 620 Ile Leu Asn Ala
Thr Tyr Tyr Gly Leu Arg Gln Val Phe Thr Glu Lys 625 630 635 640 Arg
Pro Phe Ile Ile Gly Arg Ser Thr Phe Ala Gly Ser Gly Lys Trp 645 650
655 Ala Gly His Trp Gly Gly Asp Asn Asn Ser Lys Trp Gly Ser Met Phe
660 665 670 Leu Ser Ile Ser Gln Gly Leu Ser Phe Ser Leu Phe Gly Ile
Pro Met 675 680 685 Phe Gly Val Asp Thr Cys Gly Phe Asn Gly Asn Thr
Asp Glu Glu Leu 690 695 700 Cys Ser Arg Trp Met Gln Leu Ser Ala Phe
Phe Pro Phe Tyr Arg Asn 705 710 715 720 His Asn Val Leu Gly Ala Ile
Pro Gln Glu Pro Tyr Arg Trp Ala Ser 725 730 735 Val Thr Gln Ala Ser
Lys Ala Ala Met Lys Ile Arg Tyr Ser Ile Leu 740 745 750 Pro Tyr Phe
Tyr Thr Leu Phe His Gln Ala His Thr Thr Gly Ser Thr 755 760 765 Val
Met Arg Ala Leu Ala Trp Glu Phe Pro Thr Asp Pro Ser Leu Ala 770 775
780 Ala Val Asp Thr Gln Phe Met Val Gly Pro Ser Ile Met Val Val Pro
785 790 795 800 Val Leu Glu Pro Leu Ala Asp Thr Val Lys Gly Ala Phe
Pro Gly Val 805 810 815 Gly Lys Gly Glu Val Trp Tyr Asp Trp Tyr Thr
Gln Thr Ala Val Asp 820 825 830 Ala Lys Pro Gly Val Asn Thr Thr Ile
Pro Ala Pro Leu Gly His Ile 835 840 845 Pro Val Tyr Val Arg Gly Gly
Ser Ile Leu Pro Met Gln Glu Pro Ala 850 855 860 Leu Thr Thr Arg Asp
Ala Arg Asn Thr Pro Trp Ser Leu Leu Val Ala 865 870 875 880 Leu Ser
Gly Asn Gln Thr Ala Ser Gly Ser Leu Tyr Leu Asp Asp Gly 885 890 895
Thr Ser Leu Asn Pro Ser Arg Thr Leu Asp Val Asp Phe Gln Ala
Thr 900 905 910 Ala Trp Ser Ile Lys Val Ser Val Lys Gly Thr Trp Glu
Glu Lys Asn 915 920 925 Arg Leu Asp Lys Val Thr Val Leu Gly Val Gly
Glu Lys Pro Ser Ala 930 935 940 Val Thr Phe Asn Gly Arg Asn Val His
Pro Gly Ser Val His Tyr Asn 945 950 955 960 Ala Thr Ser Lys Val Leu
Ser Val Gln Gly Leu His Ser Met Thr Pro 965 970 975 His Gly Ala Trp
Ala Gly Asn Trp Val Leu Lys Trp 980 985 9969PRTNeosartorya fischeri
9Ala Ser His Ser Leu Ala Pro Ser Thr Ser Ala Thr Ser Ala His Ala 1
5 10 15 Gln Tyr Thr Leu Pro Ser Ser Ile Asp Val Gly Ala Gln Leu Val
Ala 20 25 30 Asn Ile Asp Asp Pro Leu Ala Val Asp Ala Gln Ser Val
Cys Pro Gly 35 40 45 Tyr Lys Ala Ser Asn Val His Gln Thr Ser Gln
Gly Phe Thr Ala Ser 50 55 60 Leu Gln Leu Ala Gly Asp Pro Cys Asn
Val Tyr Gly Thr Asp Val Asp 65 70 75 80 Ser Leu Ser Leu Thr Val Asp
Tyr Leu Ala Lys Asp Arg Leu Asn Ile 85 90 95 Gln Ile Val Pro Thr
Tyr Val Asp Ala Ser Asn Ala Ser Trp Tyr Leu 100 105 110 Leu Ser Glu
Asp Leu Val Pro Arg Ala Gln Gly Ser Gly Val Ser Ala 115 120 125 Ser
Gln Ser Asp Phe Asp Val Lys Trp Ser Asn Glu Pro Ser Phe Asn 130 135
140 Leu Lys Val Ile Arg Lys Ala Thr Gly Asp Val Leu Phe Asp Thr Glu
145 150 155 160 Gly Ser Val Leu Val Phe Glu Asn Gln Phe Ile Glu Phe
Val Ser Ser 165 170 175 Leu Pro Glu Gly Tyr Asn Leu Tyr Gly Leu Gly
Glu Arg Met Ala Gln 180 185 190 Leu Arg Leu Leu Arg Asn Ala Thr Leu
Thr Thr Tyr Ala Ala Asp Val 195 200 205 Gly Asp Pro Ile Asp Ser Asn
Ile Tyr Gly Gln His Pro Phe Tyr Leu 210 215 220 Asp Thr Arg Tyr Tyr
Thr Lys Gly Thr Asn Gly Ser Tyr Ser Leu Val 225 230 235 240 Asn Thr
Asp Glu Ala Asp Leu Ser Glu Asp Tyr Glu Ser Phe Ser His 245 250 255
Gly Val Phe Leu Arg Asn Ser His Gly Gln Glu Val Leu Leu Gln Pro 260
265 270 Arg Asn Ile Thr Trp Arg Thr Ile Gly Gly Ser Ile Asp Leu Thr
Phe 275 280 285 Tyr Ser Gly Pro Thr Gln Ala Asp Val Thr Lys Ser Tyr
Gln Leu Ser 290 295 300 Thr Ile Gly Leu Pro Ala Met Gln Gln Tyr Ser
Thr Leu Gly Phe His 305 310 315 320 Gln Cys Arg Trp Gly Tyr Gln Asn
Trp Ser Gln Leu Glu Glu Val Val 325 330 335 Asn Asn Phe Glu Arg Phe
Glu Ile Pro Leu Glu Tyr Ile Trp Ser Asp 340 345 350 Ile Asp Tyr Met
Leu Gly Tyr Arg Asp Phe Glu Asn Asp Pro Glu Arg 355 360 365 Phe Ser
Tyr Asp Glu Gly Glu Glu Phe Leu Asn Lys Leu His Lys Ser 370 375 380
Gly Arg His Tyr Val Pro Ile Val Asp Ser Ala Ile Tyr Ile Pro Asn 385
390 395 400 Pro Asp Asn Ala Ser Asp Ala Tyr Glu Pro Tyr Ala Arg Gly
Ala Lys 405 410 415 Asp Asp Val Phe Ile Lys Asn Pro Asp Gly Thr Leu
Tyr Ile Gly Ala 420 425 430 Val Trp Pro Gly Phe Thr Val Phe Pro Asp
Trp Leu Asn Pro Lys Ala 435 440 445 Phe Asp Tyr Trp Ala Asn Glu Leu
Val Ile Trp Ser Lys Lys Val Ala 450 455 460 Phe Asp Gly Ile Trp Ile
Asp Met Ser Glu Val Ser Ser Phe Cys Val 465 470 475 480 Gly Ser Cys
Gly Thr Gly Lys Leu His Leu Asn Pro Val His Pro Pro 485 490 495 Phe
Gln Leu Pro Gly Glu Pro Gly Asn Ile Gly Tyr Asp Tyr Pro Glu 500 505
510 Ala Phe Asn Val Thr Asn Ser Thr Glu Ala Ala Ser Ala Ser Ala Ala
515 520 525 Ser Ala Ser Gln Ala Ser Ala Ala Ala Ala Thr Gln Thr Ala
Thr Thr 530 535 540 Ser Thr Ser Thr Ser Tyr Leu Arg Thr Thr Pro Thr
Pro Gly Val Arg 545 550 555 560 Asp Val Asn Tyr Pro Pro Tyr Val Ile
Asn His Val Gln Glu Gly His 565 570 575 Asp Leu Ala Val His Ala Ile
Ser Pro Asn Ser Thr His Ala Asp Gly 580 585 590 Val Gln Glu Tyr Asp
Val His Ser Leu Trp Gly His Gln Ile Leu Asn 595 600 605 Ala Thr Tyr
Tyr Gly Leu Arg Gln Val Phe Thr Glu Lys Arg Pro Phe 610 615 620 Ile
Ile Gly Arg Ser Thr Phe Ala Gly Ser Gly Lys Trp Ala Gly His 625 630
635 640 Trp Gly Gly Asp Asn Asn Ser Lys Trp Gly Ser Met Phe Leu Ser
Ile 645 650 655 Ser Gln Gly Leu Ser Phe Ser Leu Phe Gly Ile Pro Met
Phe Gly Val 660 665 670 Asp Thr Cys Gly Phe Asn Gly Asn Thr Asp Glu
Glu Leu Cys Ser Arg 675 680 685 Trp Met Gln Leu Ser Ala Phe Phe Pro
Phe Tyr Arg Asn His Asn Val 690 695 700 Leu Gly Ala Ile Pro Gln Glu
Pro Tyr Arg Trp Ala Ser Val Thr Gln 705 710 715 720 Ala Ser Lys Ala
Ala Met Lys Ile Arg Tyr Ser Ile Leu Pro Tyr Phe 725 730 735 Tyr Thr
Leu Phe His Gln Ala His Thr Thr Gly Ser Thr Val Met Arg 740 745 750
Ala Leu Ala Trp Glu Phe Pro Thr Asp Pro Ser Leu Ala Ala Val Asp 755
760 765 Thr Gln Phe Met Val Gly Pro Ser Ile Met Val Val Pro Val Leu
Glu 770 775 780 Pro Leu Ala Asp Thr Val Lys Gly Ala Phe Pro Gly Val
Gly Lys Gly 785 790 795 800 Glu Val Trp Tyr Asp Trp Tyr Thr Gln Thr
Ala Val Asp Ala Lys Pro 805 810 815 Gly Val Asn Thr Thr Ile Pro Ala
Pro Leu Gly His Ile Pro Val Tyr 820 825 830 Val Arg Gly Gly Ser Ile
Leu Pro Met Gln Glu Pro Ala Leu Thr Thr 835 840 845 Arg Asp Ala Arg
Asn Thr Pro Trp Ser Leu Leu Val Ala Leu Ser Gly 850 855 860 Asn Gln
Thr Ala Ser Gly Ser Leu Tyr Leu Asp Asp Gly Thr Ser Leu 865 870 875
880 Asn Pro Ser Arg Thr Leu Asp Val Asp Phe Gln Ala Thr Ala Trp Ser
885 890 895 Ile Lys Val Ser Val Lys Gly Thr Trp Glu Glu Lys Asn Arg
Leu Asp 900 905 910 Lys Val Thr Val Leu Gly Val Gly Glu Lys Pro Ser
Ala Val Thr Phe 915 920 925 Asn Gly Arg Asn Val His Pro Gly Ser Val
His Tyr Asn Ala Thr Ser 930 935 940 Lys Val Leu Ser Val Gln Gly Leu
His Ser Met Thr Pro His Gly Ala 945 950 955 960 Trp Ala Gly Asn Trp
Val Leu Lys Trp 965 103385DNANeurospora crassa 10atggccgtct
tcacatcggc ttccttcttt cttcttgcgg ctcttgtccc tcaatggaca 60tctgctcaac
atgtatctgt ggttgcaacg tcatctggac ctggtgtgtt gagcgggacg
120gtggcagggg attcccctat gttcactttc ccagcttcgg ctgacatcgg
accaaatgtc 180ttaccgaaca ttttcgaccc gcaagcagtt aatgttcaaa
gcgtctgtcc aggatataca 240gctgctaatg cacaaaagac ggagaaggga
ctcacggctg acttgaccct tgctggccct 300ccctgcaatg tctatggcaa
cgacatcgag cacctgaagc ttaccattga gtttcaggcg 360gacaatcgga
tcaatgtcca gattcaacct cgctatactg gccccggtaa tgaaacctgg
420ttcatacttc ctgaggtgct cgtgccacga ccagaggccg agcctgatgc
gaatgccgct 480agaagcaagc tggaaatctc gtggtcgaat gagcccacct
tctccttcac agtgaagcgt 540aaggagactg gagatgtctt gttcacgacc
gagggccgtg tccttgttta tgaggatcag 600ttcatcgagt tcggctcctc
tttacccgag aattacaacc tgtatggtct cggcgaagtt 660atgcatggct
ttagactggg gaacaatctg acacgtaagt ctctttactt aacatgaatg
720tgcatcgtgg attgcatctg actaacacca tctccaggca cgctgttcgc
tgcggatgtg 780ggcgacaacc tcgatgccaa catctacggc aaccacccga
tctatctcga caccagatac 840ttcaccaagg acgagtctgg aaaattaagc
tacgtttccg acccagcaga caagaatgcc 900aaatatgttt cgtatacaaa
cggtgtcttc cttcgaaatg ctcatgcaca ggaagtgctc 960cttcgacccg
aaggtatcac ctggaggact ctcggcggaa gcatcgattt gtacttcttt
1020gagggacctt ttgctcagga tatcatcaag tcttatcagc tcagtaccgt
tggtcttcct 1080gcaatgcagc agtattggac tcttggcttt caccaatgtc
gctggggata ctcgaactgg 1140actgttgtga aggatgtcgt tgacaatttc
cgcaagtttg gcatcccgtt ggagacaatc 1200tggagtgagt gaacccaagt
ccttcagcat cagaatcttc cccatccatg cttttactga 1260cttttttaag
ccgacattga ttacatgaag ggctatcgtg actttgaaaa cgaccctgat
1320cagttcagct acgaggaagg cgccaggttc ctcgaggagc ttcacaagaa
tcaccagcac 1380tacgtgccga ttgtcgactc ggccatctat gttccaaatc
ctgacaagcc agaagatgat 1440tacgaacctt accaccgtgg actcgaagct
gatgctttca tcatgaaccc agacggttcg 1500ctctatatcg gtgcagtgtg
gcctggctac accgtgtttc cggactggat tggtgccgcc 1560ctcaacggta
caggtaccgt cggctggtgg acggacgagt ttgttaggta ctataagaag
1620gtcgcttttg atggcatctg gattgacatg agcgaggttg cttctttctg
catcggaagc 1680tgtggcacgg gcaacctgac gctcaatccg gttcatccac
catggggtct tcccggtgag 1740ccaggcgctc ttgtgctcga ttaccccgaa
ggttttgaaa aaaccaacgc gagtgaggca 1800tcctctgcaa cgtcggttta
caaaacgcag aacccagacc ccacgactac agccagcacc 1860actagcacta
cttcttacct caggacgaca ccgactcctg gagtgcgcaa tatcaactat
1920ccaccatatg tcatcaacaa cttccacggc gacattggta ctcacgccct
gagccccaat 1980ggtacccacc atggcggcac agtcgactat gacttccaca
acttgttcgg ccatcagatc 2040ctccacgcaa cctaccaggc acttctcaaa
gtctttgagg gcaagcgtcc ttttatcatc 2100ggccgcagca cctttgcggg
ttctggcaaa tgggccggtc actggggtgg tgataactat 2160tccctatggg
cgtttctgta ctttagcatt ccccaggccc tatccttctc catcttcggt
2220ttccccatgt tcggcgtaga tacctgcggc ttcaatggca acacggacca
cgagctgtgc 2280tcacgatgga tgcagctcag cgcctttttc ccattctacc
gcaaccacaa cgtccgtggc 2340gccatcagcc aggagcccta cgtgtggagc
tctgtgatcg atgcgtccaa gaaggcgatg 2400aggattcgat acctcctgct
cccgtacatg tacacactta tggcccaggc cagcctgtct 2460ggagatacgg
tcatgcgcgc actctcgtgg gagttcccgc aagagccgtg gttggcggat
2520gcggatcgcc agttcatgtt gggcagcgcg gtgatggtga caccatgtct
tgttcaaggg 2580gccaatacag tggacggcgt gtttcctgga gttggcgatg
ggaccatctg gtatgattgg 2640tatacataca aggccgccag tgagggtgtt
cagcctgggg agaatgtaac gatcgatgca 2700cctctgggac acattccggt
ttttctacgg ggtggccatg tcattccagt gcaagagccg 2760ggcatgacta
cgacggagag cagacaaaat gagtggagtg tcatcgttgc tcttgatggt
2820gcgggtaagg cgaatggtac gttgtatctg gatgatggtg agagtttgga
gccgggtgag 2880aatgtgaagt gggttgatgt gagtcttctt ccgttctttc
tatttttctt ctcttttccg 2940tgagtgttca gtcggtcgat tgccactcgc
tcctctcgcg acaaggtcga aagtgctaac 3000cgggtttggc tgtttctagt
tcacggttga gaagaactca tttcgagtga cacctcaggg 3060caagtacctt
gaccgaaact cactggccaa cgtcacgatc ctgggagtgg ccgaggcacc
3120tctgggagtg gctattaata gtcatctgct cggatcagct tcttggtcct
acgactccga 3180ggggaagttc ctttcggtaa ccgagctgca ggacaacttc
aaggaagggg cgtgggcatc 3240caactggacg ctgtcgtgga actcggcctc
aaactcgggc tcgtctcctg ttcagggagg 3300cggcggcagg ctcgagttca
gcacgcccaa tttgctccat gcagctgctt tcggcatcct 3360ttttggccgc
atgtttgtag tttag 3385111044PRTNeurospora crassa 11Met Ala Val Phe
Thr Ser Ala Ser Phe Phe Leu Leu Ala Ala Leu Val 1 5 10 15 Pro Gln
Trp Thr Ser Ala Gln His Val Ser Val Val Ala Thr Ser Ser 20 25 30
Gly Pro Gly Val Leu Ser Gly Thr Val Ala Gly Asp Ser Pro Met Phe 35
40 45 Thr Phe Pro Ala Ser Ala Asp Ile Gly Pro Asn Val Leu Pro Asn
Ile 50 55 60 Phe Asp Pro Gln Ala Val Asn Val Gln Ser Val Cys Pro
Gly Tyr Thr 65 70 75 80 Ala Ala Asn Ala Gln Lys Thr Glu Lys Gly Leu
Thr Ala Asp Leu Thr 85 90 95 Leu Ala Gly Pro Pro Cys Asn Val Tyr
Gly Asn Asp Ile Glu His Leu 100 105 110 Lys Leu Thr Ile Glu Phe Gln
Ala Asp Asn Arg Ile Asn Val Gln Ile 115 120 125 Gln Pro Arg Tyr Thr
Gly Pro Gly Asn Glu Thr Trp Phe Ile Leu Pro 130 135 140 Glu Val Leu
Val Pro Arg Pro Glu Ala Glu Pro Asp Ala Asn Ala Ala 145 150 155 160
Arg Ser Lys Leu Glu Ile Ser Trp Ser Asn Glu Pro Thr Phe Ser Phe 165
170 175 Thr Val Lys Arg Lys Glu Thr Gly Asp Val Leu Phe Thr Thr Glu
Gly 180 185 190 Arg Val Leu Val Tyr Glu Asp Gln Phe Ile Glu Phe Gly
Ser Ser Leu 195 200 205 Pro Glu Asn Tyr Asn Leu Tyr Gly Leu Gly Glu
Val Met His Gly Phe 210 215 220 Arg Leu Gly Asn Asn Leu Thr Arg Thr
Leu Phe Ala Ala Asp Val Gly 225 230 235 240 Asp Asn Leu Asp Ala Asn
Ile Tyr Gly Asn His Pro Ile Tyr Leu Asp 245 250 255 Thr Arg Tyr Phe
Thr Lys Asp Glu Ser Gly Lys Leu Ser Tyr Val Ser 260 265 270 Asp Pro
Ala Asp Lys Asn Ala Lys Tyr Val Ser Tyr Thr Asn Gly Val 275 280 285
Phe Leu Arg Asn Ala His Ala Gln Glu Val Leu Leu Arg Pro Glu Gly 290
295 300 Ile Thr Trp Arg Thr Leu Gly Gly Ser Ile Asp Leu Tyr Phe Phe
Glu 305 310 315 320 Gly Pro Phe Ala Gln Asp Ile Ile Lys Ser Tyr Gln
Leu Ser Thr Val 325 330 335 Gly Leu Pro Ala Met Gln Gln Tyr Trp Thr
Leu Gly Phe His Gln Cys 340 345 350 Arg Trp Gly Tyr Ser Asn Trp Thr
Val Val Lys Asp Val Val Asp Asn 355 360 365 Phe Arg Lys Phe Gly Ile
Pro Leu Glu Thr Ile Trp Thr Asp Ile Asp 370 375 380 Tyr Met Lys Gly
Tyr Arg Asp Phe Glu Asn Asp Pro Asp Gln Phe Ser 385 390 395 400 Tyr
Glu Glu Gly Ala Arg Phe Leu Glu Glu Leu His Lys Asn His Gln 405 410
415 His Tyr Val Pro Ile Val Asp Ser Ala Ile Tyr Val Pro Asn Pro Asp
420 425 430 Lys Pro Glu Asp Asp Tyr Glu Pro Tyr His Arg Gly Leu Glu
Ala Asp 435 440 445 Ala Phe Ile Met Asn Pro Asp Gly Ser Leu Tyr Ile
Gly Ala Val Trp 450 455 460 Pro Gly Tyr Thr Val Phe Pro Asp Trp Ile
Gly Ala Ala Leu Asn Gly 465 470 475 480 Thr Gly Thr Val Gly Trp Trp
Thr Asp Glu Phe Val Arg Tyr Tyr Lys 485 490 495 Lys Val Ala Phe Asp
Gly Ile Trp Ile Asp Met Ser Glu Val Ala Ser 500 505 510 Phe Cys Ile
Gly Ser Cys Gly Thr Gly Asn Leu Thr Leu Asn Pro Val 515 520 525 His
Pro Pro Trp Gly Leu Pro Gly Glu Pro Gly Ala Leu Val Leu Asp 530 535
540 Tyr Pro Glu Gly Phe Glu Lys Thr Asn Ala Ser Glu Ala Ser Ser Ala
545 550 555 560 Thr Ser Val Tyr Lys Thr Gln Asn Pro Asp Pro Thr Thr
Thr Ala Ser 565 570 575 Thr Thr Ser Thr Thr Ser Tyr Leu Arg Thr Thr
Pro Thr Pro Gly Val 580 585 590 Arg Asn Ile Asn Tyr Pro Pro Tyr Val
Ile Asn Asn Phe His Gly Asp 595 600 605 Ile Gly Thr His Ala Leu Ser
Pro Asn Gly Thr His His Gly Gly Thr 610 615 620 Val Asp Tyr Asp Phe
His Asn Leu Phe Gly His Gln Ile Leu His Ala 625 630 635 640 Thr Tyr
Gln Ala Leu Leu Lys Val Phe Glu Gly Lys Arg Pro Phe Ile 645 650 655
Ile Gly Arg Ser Thr Phe Ala Gly Ser Gly Lys Trp Ala Gly His Trp 660
665 670 Gly Gly Asp Asn Tyr Ser Leu Trp Ala Phe Leu Tyr Phe Ser Ile
Pro 675 680 685 Gln Ala Leu Ser Phe Ser Ile Phe Gly Phe Pro Met Phe
Gly Val Asp 690 695 700 Thr Cys Gly Phe Asn Gly Asn Thr Asp His Glu
Leu Cys Ser Arg Trp 705 710
715 720 Met Gln Leu Ser Ala Phe Phe Pro Phe Tyr Arg Asn His Asn Val
Arg 725 730 735 Gly Ala Ile Ser Gln Glu Pro Tyr Val Trp Ser Ser Val
Ile Asp Ala 740 745 750 Ser Lys Lys Ala Met Arg Ile Arg Tyr Leu Leu
Leu Pro Tyr Met Tyr 755 760 765 Thr Leu Met Ala Gln Ala Ser Leu Ser
Gly Asp Thr Val Met Arg Ala 770 775 780 Leu Ser Trp Glu Phe Pro Gln
Glu Pro Trp Leu Ala Asp Ala Asp Arg 785 790 795 800 Gln Phe Met Leu
Gly Ser Ala Val Met Val Thr Pro Cys Leu Val Gln 805 810 815 Gly Ala
Asn Thr Val Asp Gly Val Phe Pro Gly Val Gly Asp Gly Thr 820 825 830
Ile Trp Tyr Asp Trp Tyr Thr Tyr Lys Ala Ala Ser Glu Gly Val Gln 835
840 845 Pro Gly Glu Asn Val Thr Ile Asp Ala Pro Leu Gly His Ile Pro
Val 850 855 860 Phe Leu Arg Gly Gly His Val Ile Pro Val Gln Glu Pro
Gly Met Thr 865 870 875 880 Thr Thr Glu Ser Arg Gln Asn Glu Trp Ser
Val Ile Val Ala Leu Asp 885 890 895 Gly Ala Gly Lys Ala Asn Gly Thr
Leu Tyr Leu Asp Asp Gly Glu Ser 900 905 910 Leu Glu Pro Gly Glu Asn
Val Lys Trp Val Asp Phe Thr Val Glu Lys 915 920 925 Asn Ser Phe Arg
Val Thr Pro Gln Gly Lys Tyr Leu Asp Arg Asn Ser 930 935 940 Leu Ala
Asn Val Thr Ile Leu Gly Val Ala Glu Ala Pro Leu Gly Val 945 950 955
960 Ala Ile Asn Ser His Leu Leu Gly Ser Ala Ser Trp Ser Tyr Asp Ser
965 970 975 Glu Gly Lys Phe Leu Ser Val Thr Glu Leu Gln Asp Asn Phe
Lys Glu 980 985 990 Gly Ala Trp Ala Ser Asn Trp Thr Leu Ser Trp Asn
Ser Ala Ser Asn 995 1000 1005 Ser Gly Ser Ser Pro Val Gln Gly Gly
Gly Gly Arg Leu Glu Phe 1010 1015 1020 Ser Thr Pro Asn Leu Leu His
Ala Ala Ala Phe Gly Ile Leu Phe 1025 1030 1035 Gly Arg Met Phe Val
Val 1040 121022PRTNeurospora crassa 12Gln His Val Ser Val Val Ala
Thr Ser Ser Gly Pro Gly Val Leu Ser 1 5 10 15 Gly Thr Val Ala Gly
Asp Ser Pro Met Phe Thr Phe Pro Ala Ser Ala 20 25 30 Asp Ile Gly
Pro Asn Val Leu Pro Asn Ile Phe Asp Pro Gln Ala Val 35 40 45 Asn
Val Gln Ser Val Cys Pro Gly Tyr Thr Ala Ala Asn Ala Gln Lys 50 55
60 Thr Glu Lys Gly Leu Thr Ala Asp Leu Thr Leu Ala Gly Pro Pro Cys
65 70 75 80 Asn Val Tyr Gly Asn Asp Ile Glu His Leu Lys Leu Thr Ile
Glu Phe 85 90 95 Gln Ala Asp Asn Arg Ile Asn Val Gln Ile Gln Pro
Arg Tyr Thr Gly 100 105 110 Pro Gly Asn Glu Thr Trp Phe Ile Leu Pro
Glu Val Leu Val Pro Arg 115 120 125 Pro Glu Ala Glu Pro Asp Ala Asn
Ala Ala Arg Ser Lys Leu Glu Ile 130 135 140 Ser Trp Ser Asn Glu Pro
Thr Phe Ser Phe Thr Val Lys Arg Lys Glu 145 150 155 160 Thr Gly Asp
Val Leu Phe Thr Thr Glu Gly Arg Val Leu Val Tyr Glu 165 170 175 Asp
Gln Phe Ile Glu Phe Gly Ser Ser Leu Pro Glu Asn Tyr Asn Leu 180 185
190 Tyr Gly Leu Gly Glu Val Met His Gly Phe Arg Leu Gly Asn Asn Leu
195 200 205 Thr Arg Thr Leu Phe Ala Ala Asp Val Gly Asp Asn Leu Asp
Ala Asn 210 215 220 Ile Tyr Gly Asn His Pro Ile Tyr Leu Asp Thr Arg
Tyr Phe Thr Lys 225 230 235 240 Asp Glu Ser Gly Lys Leu Ser Tyr Val
Ser Asp Pro Ala Asp Lys Asn 245 250 255 Ala Lys Tyr Val Ser Tyr Thr
Asn Gly Val Phe Leu Arg Asn Ala His 260 265 270 Ala Gln Glu Val Leu
Leu Arg Pro Glu Gly Ile Thr Trp Arg Thr Leu 275 280 285 Gly Gly Ser
Ile Asp Leu Tyr Phe Phe Glu Gly Pro Phe Ala Gln Asp 290 295 300 Ile
Ile Lys Ser Tyr Gln Leu Ser Thr Val Gly Leu Pro Ala Met Gln 305 310
315 320 Gln Tyr Trp Thr Leu Gly Phe His Gln Cys Arg Trp Gly Tyr Ser
Asn 325 330 335 Trp Thr Val Val Lys Asp Val Val Asp Asn Phe Arg Lys
Phe Gly Ile 340 345 350 Pro Leu Glu Thr Ile Trp Thr Asp Ile Asp Tyr
Met Lys Gly Tyr Arg 355 360 365 Asp Phe Glu Asn Asp Pro Asp Gln Phe
Ser Tyr Glu Glu Gly Ala Arg 370 375 380 Phe Leu Glu Glu Leu His Lys
Asn His Gln His Tyr Val Pro Ile Val 385 390 395 400 Asp Ser Ala Ile
Tyr Val Pro Asn Pro Asp Lys Pro Glu Asp Asp Tyr 405 410 415 Glu Pro
Tyr His Arg Gly Leu Glu Ala Asp Ala Phe Ile Met Asn Pro 420 425 430
Asp Gly Ser Leu Tyr Ile Gly Ala Val Trp Pro Gly Tyr Thr Val Phe 435
440 445 Pro Asp Trp Ile Gly Ala Ala Leu Asn Gly Thr Gly Thr Val Gly
Trp 450 455 460 Trp Thr Asp Glu Phe Val Arg Tyr Tyr Lys Lys Val Ala
Phe Asp Gly 465 470 475 480 Ile Trp Ile Asp Met Ser Glu Val Ala Ser
Phe Cys Ile Gly Ser Cys 485 490 495 Gly Thr Gly Asn Leu Thr Leu Asn
Pro Val His Pro Pro Trp Gly Leu 500 505 510 Pro Gly Glu Pro Gly Ala
Leu Val Leu Asp Tyr Pro Glu Gly Phe Glu 515 520 525 Lys Thr Asn Ala
Ser Glu Ala Ser Ser Ala Thr Ser Val Tyr Lys Thr 530 535 540 Gln Asn
Pro Asp Pro Thr Thr Thr Ala Ser Thr Thr Ser Thr Thr Ser 545 550 555
560 Tyr Leu Arg Thr Thr Pro Thr Pro Gly Val Arg Asn Ile Asn Tyr Pro
565 570 575 Pro Tyr Val Ile Asn Asn Phe His Gly Asp Ile Gly Thr His
Ala Leu 580 585 590 Ser Pro Asn Gly Thr His His Gly Gly Thr Val Asp
Tyr Asp Phe His 595 600 605 Asn Leu Phe Gly His Gln Ile Leu His Ala
Thr Tyr Gln Ala Leu Leu 610 615 620 Lys Val Phe Glu Gly Lys Arg Pro
Phe Ile Ile Gly Arg Ser Thr Phe 625 630 635 640 Ala Gly Ser Gly Lys
Trp Ala Gly His Trp Gly Gly Asp Asn Tyr Ser 645 650 655 Leu Trp Ala
Phe Leu Tyr Phe Ser Ile Pro Gln Ala Leu Ser Phe Ser 660 665 670 Ile
Phe Gly Phe Pro Met Phe Gly Val Asp Thr Cys Gly Phe Asn Gly 675 680
685 Asn Thr Asp His Glu Leu Cys Ser Arg Trp Met Gln Leu Ser Ala Phe
690 695 700 Phe Pro Phe Tyr Arg Asn His Asn Val Arg Gly Ala Ile Ser
Gln Glu 705 710 715 720 Pro Tyr Val Trp Ser Ser Val Ile Asp Ala Ser
Lys Lys Ala Met Arg 725 730 735 Ile Arg Tyr Leu Leu Leu Pro Tyr Met
Tyr Thr Leu Met Ala Gln Ala 740 745 750 Ser Leu Ser Gly Asp Thr Val
Met Arg Ala Leu Ser Trp Glu Phe Pro 755 760 765 Gln Glu Pro Trp Leu
Ala Asp Ala Asp Arg Gln Phe Met Leu Gly Ser 770 775 780 Ala Val Met
Val Thr Pro Cys Leu Val Gln Gly Ala Asn Thr Val Asp 785 790 795 800
Gly Val Phe Pro Gly Val Gly Asp Gly Thr Ile Trp Tyr Asp Trp Tyr 805
810 815 Thr Tyr Lys Ala Ala Ser Glu Gly Val Gln Pro Gly Glu Asn Val
Thr 820 825 830 Ile Asp Ala Pro Leu Gly His Ile Pro Val Phe Leu Arg
Gly Gly His 835 840 845 Val Ile Pro Val Gln Glu Pro Gly Met Thr Thr
Thr Glu Ser Arg Gln 850 855 860 Asn Glu Trp Ser Val Ile Val Ala Leu
Asp Gly Ala Gly Lys Ala Asn 865 870 875 880 Gly Thr Leu Tyr Leu Asp
Asp Gly Glu Ser Leu Glu Pro Gly Glu Asn 885 890 895 Val Lys Trp Val
Asp Phe Thr Val Glu Lys Asn Ser Phe Arg Val Thr 900 905 910 Pro Gln
Gly Lys Tyr Leu Asp Arg Asn Ser Leu Ala Asn Val Thr Ile 915 920 925
Leu Gly Val Ala Glu Ala Pro Leu Gly Val Ala Ile Asn Ser His Leu 930
935 940 Leu Gly Ser Ala Ser Trp Ser Tyr Asp Ser Glu Gly Lys Phe Leu
Ser 945 950 955 960 Val Thr Glu Leu Gln Asp Asn Phe Lys Glu Gly Ala
Trp Ala Ser Asn 965 970 975 Trp Thr Leu Ser Trp Asn Ser Ala Ser Asn
Ser Gly Ser Ser Pro Val 980 985 990 Gln Gly Gly Gly Gly Arg Leu Glu
Phe Ser Thr Pro Asn Leu Leu His 995 1000 1005 Ala Ala Ala Phe Gly
Ile Leu Phe Gly Arg Met Phe Val Val 1010 1015 1020
133293DNARasamsonia composticola 13atgcggccaa cttccctcgt caagcacttg
gctgcgacca gcctcctctt tctcgcggcg 60gatgcagctg ctatcgtccg ccgcaacggc
gcctctcctt catgccccgg ctataaagcg 120agtaacgtga agaccgtcga
cggtgaaatc gtcagcgcgg atctcaatct cgcgggtccc 180gcctgcaatg
tgtatggcac ggatctggac gatctgaagc tgcaggttga gtaccaatca
240ggtaagtcgc acagcatcgc cgtctgcagc ttatcggcag catgtgatcg
gcgcctggac 300tagggcttag ggcctggggt tagggctgac tgcttgctgc
cgttcgatgt gactggaact 360gtacggttgg ttgacaacga tctgacatct
gcagaacaac gcctccatgt gaagatctac 420gatgccgccg agcaggtcta
ccaggtgccc accgcggtgc ttccccggcc cagcagcgcc 480aacatccccc
cggccaagtc ggacctgaag ttctccatga ccaacgaccc cttctccttt
540accatcaagc gcagatcaaa cggcgaaatc ctcttcgaca cctccggcca
tccgctgatc 600ttcgagtcgc agtatctggg cctccgtacc aagctgccgg
actcgcccaa catctacggc 660ctgggagagc acaccggttc tttccgcctg
cccaccaaga attacacccg cacgctgtgg 720tcgcgcgatg cgtacggtac
gcccaaagac accaacctgt acggcaacca cccggtgtac 780ttcgactacc
gcggcagcaa cggcacccat ggcgtgttcc tgctgaacag caacggcatg
840gacgtcgata tcgacgtcga ctcggacgga cagtacctgc agtacaacac
cctggggggc 900gtgctggact tctacttcct cagcgggccg gatcccaagg
ccgtcgcgac gcagtatgcc 960gagacggtcg gaaaaccggt catgatgccc
tactggggat tcggcttcca caactgcaga 1020tatggatacc aggacatcta
tgaggttgct gagatcattg ccaactacag tgccgcaaac 1080attccgcttg
agacccaatg gactgatatc ggtatgcttt ccatcccggt gccgtggttt
1140ttgcttctca gcgtggctga ctgttgcaga ctatatggat ctgaggaaag
tgtttacgct 1200ggacccctat cgctatccat tgaagctcgt ccaagaggtt
gtctcttatc tccacaagca 1260caaccagcac tacatcatga tggtggaccc
tgcagtggca taccagaact attcagcgtt 1320caacaacggc gtcgctgccg
acgctttcct gaagttctcg aatggctcca tctaccaggg 1380tgtcgtctgg
ccggggccga cggcgttccc ggactggttc gcaccccaga cacaggagtt
1440ttggaatagc gagttctcga ccttctttga ccccgcccac ggcgtcgaca
tcgatgccct 1500ttggatcgac atgaacgagg cgtccaactt ctgcgacttt
ccctgctcga accccgccgc 1560gtatgcggca gccaacggcg atccgcccac
gcctccgccg gtccgcttga gccccccgag 1620gccgattcct ggatttggcc
ctgacttcca gccgacgtgt gtcgccacgg tgtcgttcga 1680ttgcgatgcg
cagacctact ttggcgagaa catcctcatc ctgggtaact cgacgacact
1740gggagccggc gacgttcaca tggcgccagt catgagcgcg aacaactacc
cgatctggca 1800gctgaccgtc cagatgccgc cgaatgggac gttctcgtac
cagtacgttc gcaaggaatc 1860ggacggcagt tacatctacg aacagacgaa
tcgcacggtc acgacgggcg actgcaccag 1920cggcacgctt aaggtgtccg
acaccatcac caccagctct ggaccgcaca agagatccga 1980attacggccg
ctggtgcgct cgccgttccc ggcggaggac ctgaccaggc gccagtctgg
2040atcgatgttg ggcctgccca acaggaacct gctgaatccg ccatacacca
tccacaatgc 2100ggctggcaac ctgagtgaga agaccatcaa caccgacctg
atccatgcgg gcggatatgc 2160cgagtacgac acgcacaact tgtacggcac
gatgatgagc gcgaccagca gggaggcgat 2220gctgaaccgc agaccagcag
tcaggccact tgtgtaagtc atccatcgtc cttaagccag 2280acacagcatg
ttaggggcta acgggcagta gcattacccg gtcgaccttc gctggagccg
2340gccgacaggt cggccactgg ctcggcgaca atttcgccga ttgggaccac
taccggtgga 2400cgatcgccga gctgcaggaa ttcgcggcgc tgttccagat
cccgatggtc ggcagcgaca 2460tctgcgggta cgacggcaac acgacggaca
acctgtgctc gcgctgggtc ttcctcggcg 2520ccttctcgcc cttcttccgc
gaccactcgg acaaccagtc gccgccgcac gagctgtacc 2580gcactccgca
gatcgcggcg gccgcgcgcg ccgccatcga catccgctac cgtctgctcg
2640actacgcgta cacggtgctg tggacgcaga cccagaccgg cgcgccgatg
ctcaacccca 2700tgttcttcga gtacccggcc gacagcaaca ccgccgacct
gcagtaccag ttcttctggg 2760gcgacagcat catggtcgcg cccgtgaccg
acaacgactc gaccaccgtc aacgtctact 2820tcccgaagga ccagttctac
gacttctaca ccggcgcacc tgtgtccggg gagggcaata 2880ccgtcaccct
gaccgacgtc ggcttcgaca ccatcccgct gtacttcaag ggcgggagca
2940tcgtgcccat gcgcgtgcgc tcggcgaaca cgacggcgga gctgcggcag
caggacttcg 3000tcgtcgtcat cgccccggac agccacggcg acgcgacggg
ccagctgtac ctcgacgacg 3060gcgagagcat caaccagccg cacaccagcg
agatccagtt ctcgtaccgc ggaggccatt 3120tcagcatgac aggcaagttt
gactatgatc ccggcaacgt ggtcatcagc cagatcacgc 3180tgctgggtgc
ggacggcgcc ggtaaagggg gttcgtataa cagcaccacc aaggtggcga
3240cctacaaagt caacgcgaag ttgacgggta aattcgaagc cagcttacac taa
3293141035PRTRasamsonia composticola 14Met Arg Pro Thr Ser Leu Val
Lys His Leu Ala Ala Thr Ser Leu Leu 1 5 10 15 Phe Leu Ala Ala Asp
Ala Ala Ala Ile Val Arg Arg Asn Gly Ala Ser 20 25 30 Pro Ser Cys
Pro Gly Tyr Lys Ala Ser Asn Val Lys Thr Val Asp Gly 35 40 45 Glu
Ile Val Ser Ala Asp Leu Asn Leu Ala Gly Pro Ala Cys Asn Val 50 55
60 Tyr Gly Thr Asp Leu Asp Asp Leu Lys Leu Gln Val Glu Tyr Gln Ser
65 70 75 80 Gly Pro Gly Val Arg Ala Asp Cys Leu Leu Pro Phe Asp Val
Thr Gly 85 90 95 Thr Val Arg Leu Val Asp Asn Asp Leu Thr Ser Ala
Glu Gln Arg Leu 100 105 110 His Val Lys Ile Tyr Asp Ala Ala Glu Gln
Val Tyr Gln Val Pro Thr 115 120 125 Ala Val Leu Pro Arg Pro Ser Ser
Ala Asn Ile Pro Pro Ala Lys Ser 130 135 140 Asp Leu Lys Phe Ser Met
Thr Asn Asp Pro Phe Ser Phe Thr Ile Lys 145 150 155 160 Arg Arg Ser
Asn Gly Glu Ile Leu Phe Asp Thr Ser Gly His Pro Leu 165 170 175 Ile
Phe Glu Ser Gln Tyr Leu Gly Leu Arg Thr Lys Leu Pro Asp Ser 180 185
190 Pro Asn Ile Tyr Gly Leu Gly Glu His Thr Gly Ser Phe Arg Leu Pro
195 200 205 Thr Lys Asn Tyr Thr Arg Thr Leu Trp Ser Arg Asp Ala Tyr
Gly Thr 210 215 220 Pro Lys Asp Thr Asn Leu Tyr Gly Asn His Pro Val
Tyr Phe Asp Tyr 225 230 235 240 Arg Gly Ser Asn Gly Thr His Gly Val
Phe Leu Leu Asn Ser Asn Gly 245 250 255 Met Asp Val Asp Ile Asp Val
Asp Ser Asp Gly Gln Tyr Leu Gln Tyr 260 265 270 Asn Thr Leu Gly Gly
Val Leu Asp Phe Tyr Phe Leu Ser Gly Pro Asp 275 280 285 Pro Lys Ala
Val Ala Thr Gln Tyr Ala Glu Thr Val Gly Lys Pro Val 290 295 300 Met
Met Pro Tyr Trp Gly Phe Gly Phe His Asn Cys Arg Tyr Gly Tyr 305 310
315 320 Gln Asp Ile Tyr Glu Val Ala Glu Ile Ile Ala Asn Tyr Ser Ala
Ala 325 330 335 Asn Ile Pro Leu Glu Thr Gln Trp Thr Asp Ile Asp Tyr
Met Asp Leu 340 345 350 Arg Lys Val Phe Thr Leu Asp Pro Tyr Arg Tyr
Pro Leu Lys Leu Val 355 360 365 Gln Glu Val Val Ser Tyr Leu His Lys
His Asn Gln His Tyr Ile Met 370 375 380 Met Val Asp Pro Ala Val Ala
Tyr Gln Asn Tyr Ser Ala Phe Asn Asn 385 390 395 400 Gly Val Ala Ala
Asp Ala Phe Leu Lys Phe Ser Asn Gly Ser Ile Tyr 405 410 415 Gln Gly
Val Val Trp Pro Gly Pro Thr Ala Phe Pro Asp Trp Phe Ala 420 425 430
Pro Gln Thr Gln Glu Phe Trp
Asn Ser Glu Phe Ser Thr Phe Phe Asp 435 440 445 Pro Ala His Gly Val
Asp Ile Asp Ala Leu Trp Ile Asp Met Asn Glu 450 455 460 Ala Ser Asn
Phe Cys Asp Phe Pro Cys Ser Asn Pro Ala Ala Tyr Ala 465 470 475 480
Ala Ala Asn Gly Asp Pro Pro Thr Pro Pro Pro Val Arg Leu Ser Pro 485
490 495 Pro Arg Pro Ile Pro Gly Phe Gly Pro Asp Phe Gln Pro Thr Cys
Val 500 505 510 Ala Thr Val Ser Phe Asp Cys Asp Ala Gln Thr Tyr Phe
Gly Glu Asn 515 520 525 Ile Leu Ile Leu Gly Asn Ser Thr Thr Leu Gly
Ala Gly Asp Val His 530 535 540 Met Ala Pro Val Met Ser Ala Asn Asn
Tyr Pro Ile Trp Gln Leu Thr 545 550 555 560 Val Gln Met Pro Pro Asn
Gly Thr Phe Ser Tyr Gln Tyr Val Arg Lys 565 570 575 Glu Ser Asp Gly
Ser Tyr Ile Tyr Glu Gln Thr Asn Arg Thr Val Thr 580 585 590 Thr Gly
Asp Cys Thr Ser Gly Thr Leu Lys Val Ser Asp Thr Ile Thr 595 600 605
Thr Ser Ser Gly Pro His Lys Arg Ser Glu Leu Arg Pro Leu Val Arg 610
615 620 Ser Pro Phe Pro Ala Glu Asp Leu Thr Arg Arg Gln Ser Gly Ser
Met 625 630 635 640 Leu Gly Leu Pro Asn Arg Asn Leu Leu Asn Pro Pro
Tyr Thr Ile His 645 650 655 Asn Ala Ala Gly Asn Leu Ser Glu Lys Thr
Ile Asn Thr Asp Leu Ile 660 665 670 His Ala Gly Gly Tyr Ala Glu Tyr
Asp Thr His Asn Leu Tyr Gly Thr 675 680 685 Met Met Ser Ala Thr Ser
Arg Glu Ala Met Leu Asn Arg Arg Pro Ala 690 695 700 Val Arg Pro Leu
Val Ile Thr Arg Ser Thr Phe Ala Gly Ala Gly Arg 705 710 715 720 Gln
Val Gly His Trp Leu Gly Asp Asn Phe Ala Asp Trp Asp His Tyr 725 730
735 Arg Trp Thr Ile Ala Glu Leu Gln Glu Phe Ala Ala Leu Phe Gln Ile
740 745 750 Pro Met Val Gly Ser Asp Ile Cys Gly Tyr Asp Gly Asn Thr
Thr Asp 755 760 765 Asn Leu Cys Ser Arg Trp Val Phe Leu Gly Ala Phe
Ser Pro Phe Phe 770 775 780 Arg Asp His Ser Asp Asn Gln Ser Pro Pro
His Glu Leu Tyr Arg Thr 785 790 795 800 Pro Gln Ile Ala Ala Ala Ala
Arg Ala Ala Ile Asp Ile Arg Tyr Arg 805 810 815 Leu Leu Asp Tyr Ala
Tyr Thr Val Leu Trp Thr Gln Thr Gln Thr Gly 820 825 830 Ala Pro Met
Leu Asn Pro Met Phe Phe Glu Tyr Pro Ala Asp Ser Asn 835 840 845 Thr
Ala Asp Leu Gln Tyr Gln Phe Phe Trp Gly Asp Ser Ile Met Val 850 855
860 Ala Pro Val Thr Asp Asn Asp Ser Thr Thr Val Asn Val Tyr Phe Pro
865 870 875 880 Lys Asp Gln Phe Tyr Asp Phe Tyr Thr Gly Ala Pro Val
Ser Gly Glu 885 890 895 Gly Asn Thr Val Thr Leu Thr Asp Val Gly Phe
Asp Thr Ile Pro Leu 900 905 910 Tyr Phe Lys Gly Gly Ser Ile Val Pro
Met Arg Val Arg Ser Ala Asn 915 920 925 Thr Thr Ala Glu Leu Arg Gln
Gln Asp Phe Val Val Val Ile Ala Pro 930 935 940 Asp Ser His Gly Asp
Ala Thr Gly Gln Leu Tyr Leu Asp Asp Gly Glu 945 950 955 960 Ser Ile
Asn Gln Pro His Thr Ser Glu Ile Gln Phe Ser Tyr Arg Gly 965 970 975
Gly His Phe Ser Met Thr Gly Lys Phe Asp Tyr Asp Pro Gly Asn Val 980
985 990 Val Ile Ser Gln Ile Thr Leu Leu Gly Ala Asp Gly Ala Gly Lys
Gly 995 1000 1005 Gly Ser Tyr Asn Ser Thr Thr Lys Val Ala Thr Tyr
Lys Val Asn 1010 1015 1020 Ala Lys Leu Thr Gly Lys Phe Glu Ala Ser
Leu His 1025 1030 1035 151013PRTRasamsonia composticola 15Ala Ala
Ile Val Arg Arg Asn Gly Ala Ser Pro Ser Cys Pro Gly Tyr 1 5 10 15
Lys Ala Ser Asn Val Lys Thr Val Asp Gly Glu Ile Val Ser Ala Asp 20
25 30 Leu Asn Leu Ala Gly Pro Ala Cys Asn Val Tyr Gly Thr Asp Leu
Asp 35 40 45 Asp Leu Lys Leu Gln Val Glu Tyr Gln Ser Gly Pro Gly
Val Arg Ala 50 55 60 Asp Cys Leu Leu Pro Phe Asp Val Thr Gly Thr
Val Arg Leu Val Asp 65 70 75 80 Asn Asp Leu Thr Ser Ala Glu Gln Arg
Leu His Val Lys Ile Tyr Asp 85 90 95 Ala Ala Glu Gln Val Tyr Gln
Val Pro Thr Ala Val Leu Pro Arg Pro 100 105 110 Ser Ser Ala Asn Ile
Pro Pro Ala Lys Ser Asp Leu Lys Phe Ser Met 115 120 125 Thr Asn Asp
Pro Phe Ser Phe Thr Ile Lys Arg Arg Ser Asn Gly Glu 130 135 140 Ile
Leu Phe Asp Thr Ser Gly His Pro Leu Ile Phe Glu Ser Gln Tyr 145 150
155 160 Leu Gly Leu Arg Thr Lys Leu Pro Asp Ser Pro Asn Ile Tyr Gly
Leu 165 170 175 Gly Glu His Thr Gly Ser Phe Arg Leu Pro Thr Lys Asn
Tyr Thr Arg 180 185 190 Thr Leu Trp Ser Arg Asp Ala Tyr Gly Thr Pro
Lys Asp Thr Asn Leu 195 200 205 Tyr Gly Asn His Pro Val Tyr Phe Asp
Tyr Arg Gly Ser Asn Gly Thr 210 215 220 His Gly Val Phe Leu Leu Asn
Ser Asn Gly Met Asp Val Asp Ile Asp 225 230 235 240 Val Asp Ser Asp
Gly Gln Tyr Leu Gln Tyr Asn Thr Leu Gly Gly Val 245 250 255 Leu Asp
Phe Tyr Phe Leu Ser Gly Pro Asp Pro Lys Ala Val Ala Thr 260 265 270
Gln Tyr Ala Glu Thr Val Gly Lys Pro Val Met Met Pro Tyr Trp Gly 275
280 285 Phe Gly Phe His Asn Cys Arg Tyr Gly Tyr Gln Asp Ile Tyr Glu
Val 290 295 300 Ala Glu Ile Ile Ala Asn Tyr Ser Ala Ala Asn Ile Pro
Leu Glu Thr 305 310 315 320 Gln Trp Thr Asp Ile Asp Tyr Met Asp Leu
Arg Lys Val Phe Thr Leu 325 330 335 Asp Pro Tyr Arg Tyr Pro Leu Lys
Leu Val Gln Glu Val Val Ser Tyr 340 345 350 Leu His Lys His Asn Gln
His Tyr Ile Met Met Val Asp Pro Ala Val 355 360 365 Ala Tyr Gln Asn
Tyr Ser Ala Phe Asn Asn Gly Val Ala Ala Asp Ala 370 375 380 Phe Leu
Lys Phe Ser Asn Gly Ser Ile Tyr Gln Gly Val Val Trp Pro 385 390 395
400 Gly Pro Thr Ala Phe Pro Asp Trp Phe Ala Pro Gln Thr Gln Glu Phe
405 410 415 Trp Asn Ser Glu Phe Ser Thr Phe Phe Asp Pro Ala His Gly
Val Asp 420 425 430 Ile Asp Ala Leu Trp Ile Asp Met Asn Glu Ala Ser
Asn Phe Cys Asp 435 440 445 Phe Pro Cys Ser Asn Pro Ala Ala Tyr Ala
Ala Ala Asn Gly Asp Pro 450 455 460 Pro Thr Pro Pro Pro Val Arg Leu
Ser Pro Pro Arg Pro Ile Pro Gly 465 470 475 480 Phe Gly Pro Asp Phe
Gln Pro Thr Cys Val Ala Thr Val Ser Phe Asp 485 490 495 Cys Asp Ala
Gln Thr Tyr Phe Gly Glu Asn Ile Leu Ile Leu Gly Asn 500 505 510 Ser
Thr Thr Leu Gly Ala Gly Asp Val His Met Ala Pro Val Met Ser 515 520
525 Ala Asn Asn Tyr Pro Ile Trp Gln Leu Thr Val Gln Met Pro Pro Asn
530 535 540 Gly Thr Phe Ser Tyr Gln Tyr Val Arg Lys Glu Ser Asp Gly
Ser Tyr 545 550 555 560 Ile Tyr Glu Gln Thr Asn Arg Thr Val Thr Thr
Gly Asp Cys Thr Ser 565 570 575 Gly Thr Leu Lys Val Ser Asp Thr Ile
Thr Thr Ser Ser Gly Pro His 580 585 590 Lys Arg Ser Glu Leu Arg Pro
Leu Val Arg Ser Pro Phe Pro Ala Glu 595 600 605 Asp Leu Thr Arg Arg
Gln Ser Gly Ser Met Leu Gly Leu Pro Asn Arg 610 615 620 Asn Leu Leu
Asn Pro Pro Tyr Thr Ile His Asn Ala Ala Gly Asn Leu 625 630 635 640
Ser Glu Lys Thr Ile Asn Thr Asp Leu Ile His Ala Gly Gly Tyr Ala 645
650 655 Glu Tyr Asp Thr His Asn Leu Tyr Gly Thr Met Met Ser Ala Thr
Ser 660 665 670 Arg Glu Ala Met Leu Asn Arg Arg Pro Ala Val Arg Pro
Leu Val Ile 675 680 685 Thr Arg Ser Thr Phe Ala Gly Ala Gly Arg Gln
Val Gly His Trp Leu 690 695 700 Gly Asp Asn Phe Ala Asp Trp Asp His
Tyr Arg Trp Thr Ile Ala Glu 705 710 715 720 Leu Gln Glu Phe Ala Ala
Leu Phe Gln Ile Pro Met Val Gly Ser Asp 725 730 735 Ile Cys Gly Tyr
Asp Gly Asn Thr Thr Asp Asn Leu Cys Ser Arg Trp 740 745 750 Val Phe
Leu Gly Ala Phe Ser Pro Phe Phe Arg Asp His Ser Asp Asn 755 760 765
Gln Ser Pro Pro His Glu Leu Tyr Arg Thr Pro Gln Ile Ala Ala Ala 770
775 780 Ala Arg Ala Ala Ile Asp Ile Arg Tyr Arg Leu Leu Asp Tyr Ala
Tyr 785 790 795 800 Thr Val Leu Trp Thr Gln Thr Gln Thr Gly Ala Pro
Met Leu Asn Pro 805 810 815 Met Phe Phe Glu Tyr Pro Ala Asp Ser Asn
Thr Ala Asp Leu Gln Tyr 820 825 830 Gln Phe Phe Trp Gly Asp Ser Ile
Met Val Ala Pro Val Thr Asp Asn 835 840 845 Asp Ser Thr Thr Val Asn
Val Tyr Phe Pro Lys Asp Gln Phe Tyr Asp 850 855 860 Phe Tyr Thr Gly
Ala Pro Val Ser Gly Glu Gly Asn Thr Val Thr Leu 865 870 875 880 Thr
Asp Val Gly Phe Asp Thr Ile Pro Leu Tyr Phe Lys Gly Gly Ser 885 890
895 Ile Val Pro Met Arg Val Arg Ser Ala Asn Thr Thr Ala Glu Leu Arg
900 905 910 Gln Gln Asp Phe Val Val Val Ile Ala Pro Asp Ser His Gly
Asp Ala 915 920 925 Thr Gly Gln Leu Tyr Leu Asp Asp Gly Glu Ser Ile
Asn Gln Pro His 930 935 940 Thr Ser Glu Ile Gln Phe Ser Tyr Arg Gly
Gly His Phe Ser Met Thr 945 950 955 960 Gly Lys Phe Asp Tyr Asp Pro
Gly Asn Val Val Ile Ser Gln Ile Thr 965 970 975 Leu Leu Gly Ala Asp
Gly Ala Gly Lys Gly Gly Ser Tyr Asn Ser Thr 980 985 990 Thr Lys Val
Ala Thr Tyr Lys Val Asn Ala Lys Leu Thr Gly Lys Phe 995 1000 1005
Glu Ala Ser Leu His 1010 163162DNARasamsonia composticola
16atggcaggct ccgccgccct tgttgccagc ctcgtctggc ttgctcaggc cttcgacgct
60cttgcaggac cggtcagcag tacgactgcc gcagcaccat ctgctcaatt caccgtcccg
120gccgctgcgg atgttggggc caacttgctt gccaacatcg acgatcccaa
tgccgtcaac 180gcccaggatg tctgtcccgg ttacacggcg tcgaacgtgc
agaacaccga gtctgggttt 240gtggcgaccc tgacgctggc ggggaaacca
tgtaatgtgt acggaacgga cgtggagtcc 300ctgaacctga cggttgagta
ccaagctgcg gatcgactga acatcaatat cgtcccgacg 360cacgtcgatt
cttcaaacca gtcgtggtat ctgcttcccg aaaatgtagt gcccaaaccg
420ggggtcgatg caggagccca agtcccggag agtgatctcg tcttcagctg
gtcgaatgaa 480ccctccttca atttcaaggt gatccggaaa gccacaggcg
acattctctt cgacacggag 540ggttctgtcc tggtgttcga aaaccagttc
atcgagtttg cgagcgctct gccggagaac 600tacaatctct acggtctggg
agagcgtatc catggcctgc gactggggaa caacttcacc 660gccacgacgt
atgccgcgga tagcgcagac cctattgacc ggtgagtatc tgagatcgac
720tgctcagtct gctctgttgg atctgaaaga agttataaaa ctgacctagc
tcaggaacat 780ctacgggacc catccctttt atctggacac ccggtactac
gaggttgatt ccgagcatgg 840gaggttcacg ttggtgacgg acaacgagac
cgatttctcc aaggaatatc tgtcgctctc 900gcatggagtt ttcctgagaa
atgcccacgg acaggaggtg ctgctgcgtc ctcagagcat 960cacctggcgg
acactcggtg gcagcattga tctttacttc tacgccggtc cgacccaggc
1020cgatgttacc cgcagctacc agaccagcac cgttggcctc ccggcaatgc
agcagtactt 1080caccctgggc tatcatcagt gccgctgggg atacagaaac
tggtcggagc tagctgatgt 1140agtggccaat ttcgagaaat tcgagatccc
attggaaaat atctggtaag gcatacgcta 1200tctgaaagag ttgctgggaa
agtgatctga caacttcgtc tctccaggtc ggatattgat 1260tacatgaacg
agtaccgcga ctttgagaac gacccggttc gcttctccta cagcgaggga
1320gccaaattcc tggaccagct ccacaagagt ggccgtcact acatcccgat
tgtggacgcc 1380gcgatctatg accccaaccc taacaatgac tccgacgcgt
aagtctagtc ttgtagggag 1440gtgataggga gtggagctga cttctcgatt
aggtatgcga catatgatcg aggttctaag 1500gacgatatct ggttgaagaa
tcccgacggc agcgtgtaca tcggagccgt ctggcctggc 1560tacacagtgt
tcaccgattg gcaccatcca aaagccaacg agtggtgggc aaacgagctg
1620gctctgtggc acgaaaaggt cgcttttgac ggaatctggc tggacatgaa
cgaggtctcg 1680tccttctgcg ttggcagctg tggaacaggg aacctgaccc
tgaatcccgt gcacccgaac 1740ttcgcgctcc cgggagagcc tggagctgtc
atctacgact accccgagga cttcaacgtg 1800acgaatgcca cggcggcggc
gtctgcatct gccgcgtcct cgagccaagc tgctgcgaca 1860gcgacagcta
cttcttcgtc cacgactacc agctacctgg tgaccacgcc cactcctgga
1920gtgcggaatg tcaactaccc tccctatgtg attaatcacg tgcaggaggg
tcacgatctc 1980gctgttcacg ccgtctcgcc caacgcaacc catgtcgatg
gtgtgcagga gtacgacgtg 2040cacaatctct ggggctacca ggagacaaat
gcaacctacc atgccctgct gagcatcttc 2100cccgggaaga gaccgttcat
catctcccgt tccacgttcg ccggcagcgg cagatgggcc 2160ggacactggg
gtggcgacaa cgcctcgaaa tgggcgtaca tgttcttttc tatcccgcag
2220gcgctatcgt tctcgctgtt cggcatcccc atgttcggcg tcgacacctg
cgggttcaac 2280ggcaactcgg acgaagagct gtgcaaccgc tggatgcagc
tctccgcctt cttccccttc 2340taccgcaacc acaacgtcct gtcggccatc
ccgcaggagc cctatgtctg ggcatccgtc 2400atcgaggcga gcaagtcggc
aatgaggatc cgctacaccc tgctccctta cctctacaca 2460ctgttctacc
tcgcccacac cacggggtcg accgtcatgc gtgccttggc gtgggagttc
2520cccaacgacc cgtccctcgc tgccgtggac cggcagttcc tcctgggccc
gtcgctgatg 2580gtcgtccccg tgctcgagcc gcaggtcgat accgtcaagg
gcgtcttccc gggcgttgcc 2640cagggccaag tctggtacga ctggtacacg
cagaccgcgt tcgacgcgca gccaggcgtg 2700aacacgacca tctccgcgcc
gctgggccac atccccgtgt tcgtccgcgg cgggagcgtg 2760ctccccatgc
agcagccggc actggtgacg cgggacgtgc gcaacagccc ctggtcgctg
2820ctggtcgcgc tgggcagcga cggcacggcc tcgggacagc tgtacgtgga
cgacggcgag 2880agcatcacac ctccggcgtc cctgcacgtc gacttcgtgg
cggccaactt ctcgaccctc 2940ttcgcgacgg cccgcggtgc gttcaaggac
agcaacacgc tggctaacgt cacggtgctg 3000ggcgtcccag ccgcgccgtc
gtctgcagtc acttggaaca acgagacggt tccttcggag 3060tcggtgtcgt
acaatgccac ctccaaagtc ctcgtggtca atggactgca gagtcttacc
3120cgtgacggag cctggagcag tgactgggtt ctgaagtggt aa
316217990PRTRasamsonia composticola 17Met Ala Gly Ser Ala Ala Leu
Val Ala Ser Leu Val Trp Leu Ala Gln 1 5 10 15 Ala Phe Asp Ala Leu
Ala Gly Pro Val Ser Ser Thr Thr Ala Ala Ala 20 25 30 Pro Ser Ala
Gln Phe Thr Val Pro Ala Ala Ala Asp Val Gly Ala Asn 35 40 45 Leu
Leu Ala Asn Ile Asp Asp Pro Asn Ala Val Asn Ala Gln Asp Val 50 55
60 Cys Pro Gly Tyr Thr Ala Ser Asn Val Gln Asn Thr Glu Ser Gly Phe
65 70 75 80 Val Ala Thr Leu Thr Leu Ala Gly Lys Pro Cys Asn Val Tyr
Gly Thr 85 90 95 Asp Val Glu Ser Leu Asn Leu Thr Val Glu Tyr Gln
Ala Ala Asp Arg 100 105 110 Leu Asn Ile Asn Ile Val Pro Thr His Val
Asp Ser Ser Asn Gln Ser 115 120 125 Trp Tyr Leu Leu Pro Glu Asn Val
Val Pro Lys Pro Gly Val Asp Ala 130 135 140 Gly Ala Gln Val Pro Glu
Ser Asp Leu Val Phe Ser Trp Ser Asn Glu 145 150 155 160 Pro Ser Phe
Asn Phe Lys Val Ile Arg Lys Ala Thr Gly Asp Ile Leu 165 170 175 Phe
Asp Thr Glu Gly Ser Val Leu Val Phe Glu Asn Gln Phe Ile Glu 180
185 190 Phe Ala Ser Ala Leu Pro Glu Asn Tyr Asn Leu Tyr Gly Leu Gly
Glu 195 200 205 Arg Ile His Gly Leu Arg Leu Gly Asn Asn Phe Thr Ala
Thr Thr Tyr 210 215 220 Ala Ala Asp Ser Ala Asp Pro Ile Asp Arg Asn
Ile Tyr Gly Thr His 225 230 235 240 Pro Phe Tyr Leu Asp Thr Arg Tyr
Tyr Glu Val Asp Ser Glu His Gly 245 250 255 Arg Phe Thr Leu Val Thr
Asp Asn Glu Thr Asp Phe Ser Lys Glu Tyr 260 265 270 Leu Ser Leu Ser
His Gly Val Phe Leu Arg Asn Ala His Gly Gln Glu 275 280 285 Val Leu
Leu Arg Pro Gln Ser Ile Thr Trp Arg Thr Leu Gly Gly Ser 290 295 300
Ile Asp Leu Tyr Phe Tyr Ala Gly Pro Thr Gln Ala Asp Val Thr Arg 305
310 315 320 Ser Tyr Gln Thr Ser Thr Val Gly Leu Pro Ala Met Gln Gln
Tyr Phe 325 330 335 Thr Leu Gly Tyr His Gln Cys Arg Trp Gly Tyr Arg
Asn Trp Ser Glu 340 345 350 Leu Ala Asp Val Val Ala Asn Phe Glu Lys
Phe Glu Ile Pro Leu Glu 355 360 365 Asn Ile Trp Ser Asp Ile Asp Tyr
Met Asn Glu Tyr Arg Asp Phe Glu 370 375 380 Asn Asp Pro Val Arg Phe
Ser Tyr Ser Glu Gly Ala Lys Phe Leu Asp 385 390 395 400 Gln Leu His
Lys Ser Gly Arg His Tyr Ile Pro Ile Val Asp Ala Ala 405 410 415 Ile
Tyr Asp Pro Asn Pro Asn Asn Asp Ser Asp Ala Tyr Ala Thr Tyr 420 425
430 Asp Arg Gly Ser Lys Asp Asp Ile Trp Leu Lys Asn Pro Asp Gly Ser
435 440 445 Val Tyr Ile Gly Ala Val Trp Pro Gly Tyr Thr Val Phe Thr
Asp Trp 450 455 460 His His Pro Lys Ala Asn Glu Trp Trp Ala Asn Glu
Leu Ala Leu Trp 465 470 475 480 His Glu Lys Val Ala Phe Asp Gly Ile
Trp Leu Asp Met Asn Glu Val 485 490 495 Ser Ser Phe Cys Val Gly Ser
Cys Gly Thr Gly Asn Leu Thr Leu Asn 500 505 510 Pro Val His Pro Asn
Phe Ala Leu Pro Gly Glu Pro Gly Ala Val Ile 515 520 525 Tyr Asp Tyr
Pro Glu Asp Phe Asn Val Thr Asn Ala Thr Ala Ala Ala 530 535 540 Ser
Ala Ser Ala Ala Ser Ser Ser Gln Ala Ala Ala Thr Ala Thr Ala 545 550
555 560 Thr Ser Ser Ser Thr Thr Thr Ser Tyr Leu Val Thr Thr Pro Thr
Pro 565 570 575 Gly Val Arg Asn Val Asn Tyr Pro Pro Tyr Val Ile Asn
His Val Gln 580 585 590 Glu Gly His Asp Leu Ala Val His Ala Val Ser
Pro Asn Ala Thr His 595 600 605 Val Asp Gly Val Gln Glu Tyr Asp Val
His Asn Leu Trp Gly Tyr Gln 610 615 620 Glu Thr Asn Ala Thr Tyr His
Ala Leu Leu Ser Ile Phe Pro Gly Lys 625 630 635 640 Arg Pro Phe Ile
Ile Ser Arg Ser Thr Phe Ala Gly Ser Gly Arg Trp 645 650 655 Ala Gly
His Trp Gly Gly Asp Asn Ala Ser Lys Trp Ala Tyr Met Phe 660 665 670
Phe Ser Ile Pro Gln Ala Leu Ser Phe Ser Leu Phe Gly Ile Pro Met 675
680 685 Phe Gly Val Asp Thr Cys Gly Phe Asn Gly Asn Ser Asp Glu Glu
Leu 690 695 700 Cys Asn Arg Trp Met Gln Leu Ser Ala Phe Phe Pro Phe
Tyr Arg Asn 705 710 715 720 His Asn Val Leu Ser Ala Ile Pro Gln Glu
Pro Tyr Val Trp Ala Ser 725 730 735 Val Ile Glu Ala Ser Lys Ser Ala
Met Arg Ile Arg Tyr Thr Leu Leu 740 745 750 Pro Tyr Leu Tyr Thr Leu
Phe Tyr Leu Ala His Thr Thr Gly Ser Thr 755 760 765 Val Met Arg Ala
Leu Ala Trp Glu Phe Pro Asn Asp Pro Ser Leu Ala 770 775 780 Ala Val
Asp Arg Gln Phe Leu Leu Gly Pro Ser Leu Met Val Val Pro 785 790 795
800 Val Leu Glu Pro Gln Val Asp Thr Val Lys Gly Val Phe Pro Gly Val
805 810 815 Ala Gln Gly Gln Val Trp Tyr Asp Trp Tyr Thr Gln Thr Ala
Phe Asp 820 825 830 Ala Gln Pro Gly Val Asn Thr Thr Ile Ser Ala Pro
Leu Gly His Ile 835 840 845 Pro Val Phe Val Arg Gly Gly Ser Val Leu
Pro Met Gln Gln Pro Ala 850 855 860 Leu Val Thr Arg Asp Val Arg Asn
Ser Pro Trp Ser Leu Leu Val Ala 865 870 875 880 Leu Gly Ser Asp Gly
Thr Ala Ser Gly Gln Leu Tyr Val Asp Asp Gly 885 890 895 Glu Ser Ile
Thr Pro Pro Ala Ser Leu His Val Asp Phe Val Ala Ala 900 905 910 Asn
Phe Ser Thr Leu Phe Ala Thr Ala Arg Gly Ala Phe Lys Asp Ser 915 920
925 Asn Thr Leu Ala Asn Val Thr Val Leu Gly Val Pro Ala Ala Pro Ser
930 935 940 Ser Ala Val Thr Trp Asn Asn Glu Thr Val Pro Ser Glu Ser
Val Ser 945 950 955 960 Tyr Asn Ala Thr Ser Lys Val Leu Val Val Asn
Gly Leu Gln Ser Leu 965 970 975 Thr Arg Asp Gly Ala Trp Ser Ser Asp
Trp Val Leu Lys Trp 980 985 990 18973PRTRasamsonia composticola
18Phe Asp Ala Leu Ala Gly Pro Val Ser Ser Thr Thr Ala Ala Ala Pro 1
5 10 15 Ser Ala Gln Phe Thr Val Pro Ala Ala Ala Asp Val Gly Ala Asn
Leu 20 25 30 Leu Ala Asn Ile Asp Asp Pro Asn Ala Val Asn Ala Gln
Asp Val Cys 35 40 45 Pro Gly Tyr Thr Ala Ser Asn Val Gln Asn Thr
Glu Ser Gly Phe Val 50 55 60 Ala Thr Leu Thr Leu Ala Gly Lys Pro
Cys Asn Val Tyr Gly Thr Asp 65 70 75 80 Val Glu Ser Leu Asn Leu Thr
Val Glu Tyr Gln Ala Ala Asp Arg Leu 85 90 95 Asn Ile Asn Ile Val
Pro Thr His Val Asp Ser Ser Asn Gln Ser Trp 100 105 110 Tyr Leu Leu
Pro Glu Asn Val Val Pro Lys Pro Gly Val Asp Ala Gly 115 120 125 Ala
Gln Val Pro Glu Ser Asp Leu Val Phe Ser Trp Ser Asn Glu Pro 130 135
140 Ser Phe Asn Phe Lys Val Ile Arg Lys Ala Thr Gly Asp Ile Leu Phe
145 150 155 160 Asp Thr Glu Gly Ser Val Leu Val Phe Glu Asn Gln Phe
Ile Glu Phe 165 170 175 Ala Ser Ala Leu Pro Glu Asn Tyr Asn Leu Tyr
Gly Leu Gly Glu Arg 180 185 190 Ile His Gly Leu Arg Leu Gly Asn Asn
Phe Thr Ala Thr Thr Tyr Ala 195 200 205 Ala Asp Ser Ala Asp Pro Ile
Asp Arg Asn Ile Tyr Gly Thr His Pro 210 215 220 Phe Tyr Leu Asp Thr
Arg Tyr Tyr Glu Val Asp Ser Glu His Gly Arg 225 230 235 240 Phe Thr
Leu Val Thr Asp Asn Glu Thr Asp Phe Ser Lys Glu Tyr Leu 245 250 255
Ser Leu Ser His Gly Val Phe Leu Arg Asn Ala His Gly Gln Glu Val 260
265 270 Leu Leu Arg Pro Gln Ser Ile Thr Trp Arg Thr Leu Gly Gly Ser
Ile 275 280 285 Asp Leu Tyr Phe Tyr Ala Gly Pro Thr Gln Ala Asp Val
Thr Arg Ser 290 295 300 Tyr Gln Thr Ser Thr Val Gly Leu Pro Ala Met
Gln Gln Tyr Phe Thr 305 310 315 320 Leu Gly Tyr His Gln Cys Arg Trp
Gly Tyr Arg Asn Trp Ser Glu Leu 325 330 335 Ala Asp Val Val Ala Asn
Phe Glu Lys Phe Glu Ile Pro Leu Glu Asn 340 345 350 Ile Trp Ser Asp
Ile Asp Tyr Met Asn Glu Tyr Arg Asp Phe Glu Asn 355 360 365 Asp Pro
Val Arg Phe Ser Tyr Ser Glu Gly Ala Lys Phe Leu Asp Gln 370 375 380
Leu His Lys Ser Gly Arg His Tyr Ile Pro Ile Val Asp Ala Ala Ile 385
390 395 400 Tyr Asp Pro Asn Pro Asn Asn Asp Ser Asp Ala Tyr Ala Thr
Tyr Asp 405 410 415 Arg Gly Ser Lys Asp Asp Ile Trp Leu Lys Asn Pro
Asp Gly Ser Val 420 425 430 Tyr Ile Gly Ala Val Trp Pro Gly Tyr Thr
Val Phe Thr Asp Trp His 435 440 445 His Pro Lys Ala Asn Glu Trp Trp
Ala Asn Glu Leu Ala Leu Trp His 450 455 460 Glu Lys Val Ala Phe Asp
Gly Ile Trp Leu Asp Met Asn Glu Val Ser 465 470 475 480 Ser Phe Cys
Val Gly Ser Cys Gly Thr Gly Asn Leu Thr Leu Asn Pro 485 490 495 Val
His Pro Asn Phe Ala Leu Pro Gly Glu Pro Gly Ala Val Ile Tyr 500 505
510 Asp Tyr Pro Glu Asp Phe Asn Val Thr Asn Ala Thr Ala Ala Ala Ser
515 520 525 Ala Ser Ala Ala Ser Ser Ser Gln Ala Ala Ala Thr Ala Thr
Ala Thr 530 535 540 Ser Ser Ser Thr Thr Thr Ser Tyr Leu Val Thr Thr
Pro Thr Pro Gly 545 550 555 560 Val Arg Asn Val Asn Tyr Pro Pro Tyr
Val Ile Asn His Val Gln Glu 565 570 575 Gly His Asp Leu Ala Val His
Ala Val Ser Pro Asn Ala Thr His Val 580 585 590 Asp Gly Val Gln Glu
Tyr Asp Val His Asn Leu Trp Gly Tyr Gln Glu 595 600 605 Thr Asn Ala
Thr Tyr His Ala Leu Leu Ser Ile Phe Pro Gly Lys Arg 610 615 620 Pro
Phe Ile Ile Ser Arg Ser Thr Phe Ala Gly Ser Gly Arg Trp Ala 625 630
635 640 Gly His Trp Gly Gly Asp Asn Ala Ser Lys Trp Ala Tyr Met Phe
Phe 645 650 655 Ser Ile Pro Gln Ala Leu Ser Phe Ser Leu Phe Gly Ile
Pro Met Phe 660 665 670 Gly Val Asp Thr Cys Gly Phe Asn Gly Asn Ser
Asp Glu Glu Leu Cys 675 680 685 Asn Arg Trp Met Gln Leu Ser Ala Phe
Phe Pro Phe Tyr Arg Asn His 690 695 700 Asn Val Leu Ser Ala Ile Pro
Gln Glu Pro Tyr Val Trp Ala Ser Val 705 710 715 720 Ile Glu Ala Ser
Lys Ser Ala Met Arg Ile Arg Tyr Thr Leu Leu Pro 725 730 735 Tyr Leu
Tyr Thr Leu Phe Tyr Leu Ala His Thr Thr Gly Ser Thr Val 740 745 750
Met Arg Ala Leu Ala Trp Glu Phe Pro Asn Asp Pro Ser Leu Ala Ala 755
760 765 Val Asp Arg Gln Phe Leu Leu Gly Pro Ser Leu Met Val Val Pro
Val 770 775 780 Leu Glu Pro Gln Val Asp Thr Val Lys Gly Val Phe Pro
Gly Val Ala 785 790 795 800 Gln Gly Gln Val Trp Tyr Asp Trp Tyr Thr
Gln Thr Ala Phe Asp Ala 805 810 815 Gln Pro Gly Val Asn Thr Thr Ile
Ser Ala Pro Leu Gly His Ile Pro 820 825 830 Val Phe Val Arg Gly Gly
Ser Val Leu Pro Met Gln Gln Pro Ala Leu 835 840 845 Val Thr Arg Asp
Val Arg Asn Ser Pro Trp Ser Leu Leu Val Ala Leu 850 855 860 Gly Ser
Asp Gly Thr Ala Ser Gly Gln Leu Tyr Val Asp Asp Gly Glu 865 870 875
880 Ser Ile Thr Pro Pro Ala Ser Leu His Val Asp Phe Val Ala Ala Asn
885 890 895 Phe Ser Thr Leu Phe Ala Thr Ala Arg Gly Ala Phe Lys Asp
Ser Asn 900 905 910 Thr Leu Ala Asn Val Thr Val Leu Gly Val Pro Ala
Ala Pro Ser Ser 915 920 925 Ala Val Thr Trp Asn Asn Glu Thr Val Pro
Ser Glu Ser Val Ser Tyr 930 935 940 Asn Ala Thr Ser Lys Val Leu Val
Val Asn Gly Leu Gln Ser Leu Thr 945 950 955 960 Arg Asp Gly Ala Trp
Ser Ser Asp Trp Val Leu Lys Trp 965 970 191815DNABifidobacterium
longum 19atgaccgcaa ataatctcaa tgacgactgg tggaagcagg ccgtcgtcta
ccagatctac 60ccgcgcagct tcaaggacgt taacggcgac ggactcggcg acatcgccgg
cgtcaccgag 120aagatggact acctgaagaa cctcggcgtc gacgcaatct
ggctctcccc gttctacccc 180tccgatctgg cggacggcgg ctacgacgta
atcgactacc gcaacgtcga cccgcgccta 240ggcaccatgg aagacttcga
cgcgatggcc aaggccgcgc acgaggccgg catcaaggtg 300atcgtggaca
tcgtgcccaa ccacaccgct gacaagcacg tgttcttcca ggaggccctc
360gccgccgagc ctggctcccc ggcgcgcgac cgctacatct tccgcgacgg
ccgcggcgag 420catggcgaac tgcccccgaa cgactggcaa tccttcttcg
gcggcccggc ctgggcgcgc 480gtggccgacg gccagtggta tctgcacctg
ttcgataagg cgcagccgga cgtcaactgg 540aagaatccgg acatccacga
ggagttcaag aagaccctgc gtttctggtc cgaccacggc 600accgacggct
tccgcatcga cgtggcgcac ggcctggcca aggacctcga atccaagccg
660ttggaagagc tcggccgcga atacagcgtg gtcggcgtgc tgaatcatga
cttcagccac 720ccgctgttcg accgtcgcga ggtgcacgat atctaccgcg
aatggcgcaa ggtgttcaac 780gagtacgacc cgccgcgctt tgccgtggcc
gaggcgtggg tggtgcccga gcaccagcac 840ctgtacgctt cgatggacga
gctgggccag tccttcaact tcgacttcgc gcaagccaac 900tggtatgccg
acgagttccg cgaggccatc gccgccggac tcaaggcggc ggccgaaacc
960ggcggttcca ccaccacgtg ggtcatgaac aatcacgacg tgccgcgcag
cccctcccgt 1020tacggcctgc cgcagatcaa gggcgcaccc taccaccagc
tgccgcacga ctggctgctg 1080cgcaacggca ctacctatcc cgaggatcgc
gagcttggca ctcgccgcgc ccgcgccgcc 1140gctttgatgg agctcggcct
gcccggcgcc gcctatatct atcagggcga ggagctgggc 1200ctgtttgagg
tggccgatat tccgtgggat cacttggagg atccgaccgc tttccacact
1260gctcaggcca cgatggacaa gggccgcgac ggctgccgcg tgccgctgcc
gtggaccgcc 1320gccgatgagc cggccttggc cgatttcagc cgtccgactc
cggccgatga cggtaccggc 1380gagaaccatg tgccgctgtg cgccgccggc
cagttcggca cgggcgcttc cttcggcttc 1440tcgccggcta cgcgcgctga
gggcgtgacg ccggccgccg acccgcacct gccgcaaccg 1500ctgtggttca
aggattacgc ggtggacgtg gagcaagccg acccggactc gatgctcgcg
1560ctgtatcgcg ccgcactggc gattcgccag gagtcgctga ccgccacgcg
cgacaccacg 1620gccgagcagg tggacatggg cgacgatgtg gtggcgtaca
cccgcgcggc ggttggcggg 1680cgggtgttca cctcaatcac caacttcggc
aatgctccgg tcgcgctgcc cgatggctcc 1740gtggtgctgg cgtccggccc
gctgaccccc gaagcccagc tccccaccga cacttctgcg 1800tgggttgttc agtag
181520604PRTBifidobacterium longum 20Met Thr Ala Asn Asn Leu Asn
Asp Asp Trp Trp Lys Gln Ala Val Val 1 5 10 15 Tyr Gln Ile Tyr Pro
Arg Ser Phe Lys Asp Val Asn Gly Asp Gly Leu 20 25 30 Gly Asp Ile
Ala Gly Val Thr Glu Lys Met Asp Tyr Leu Lys Asn Leu 35 40 45 Gly
Val Asp Ala Ile Trp Leu Ser Pro Phe Tyr Pro Ser Asp Leu Ala 50 55
60 Asp Gly Gly Tyr Asp Val Ile Asp Tyr Arg Asn Val Asp Pro Arg Leu
65 70 75 80 Gly Thr Met Glu Asp Phe Asp Ala Met Ala Lys Ala Ala His
Glu Ala 85 90 95 Gly Ile Lys Val Ile Val Asp Ile Val Pro Asn His
Thr Ala Asp Lys 100 105 110 His Val Phe Phe Gln Glu Ala Leu Ala Ala
Glu Pro Gly Ser Pro Ala 115 120 125 Arg Asp Arg Tyr Ile Phe Arg Asp
Gly Arg Gly Glu His Gly Glu Leu 130 135 140 Pro Pro Asn Asp Trp Gln
Ser Phe Phe Gly Gly Pro Ala Trp Ala Arg 145 150 155 160 Val Ala Asp
Gly Gln Trp Tyr Leu His Leu Phe Asp Lys Ala Gln Pro 165 170 175 Asp
Val Asn Trp Lys Asn Pro Asp Ile His Glu Glu Phe Lys Lys Thr 180 185
190 Leu Arg Phe Trp Ser Asp His Gly Thr Asp Gly Phe Arg Ile Asp Val
195 200 205 Ala His Gly Leu Ala Lys Asp Leu Glu Ser Lys Pro Leu Glu
Glu Leu 210 215 220 Gly Arg Glu Tyr Ser Val Val Gly Val Leu Asn His
Asp Phe Ser His 225
230 235 240 Pro Leu Phe Asp Arg Arg Glu Val His Asp Ile Tyr Arg Glu
Trp Arg 245 250 255 Lys Val Phe Asn Glu Tyr Asp Pro Pro Arg Phe Ala
Val Ala Glu Ala 260 265 270 Trp Val Val Pro Glu His Gln His Leu Tyr
Ala Ser Met Asp Glu Leu 275 280 285 Gly Gln Ser Phe Asn Phe Asp Phe
Ala Gln Ala Asn Trp Tyr Ala Asp 290 295 300 Glu Phe Arg Glu Ala Ile
Ala Ala Gly Leu Lys Ala Ala Ala Glu Thr 305 310 315 320 Gly Gly Ser
Thr Thr Thr Trp Val Met Asn Asn His Asp Val Pro Arg 325 330 335 Ser
Pro Ser Arg Tyr Gly Leu Pro Gln Ile Lys Gly Ala Pro Tyr His 340 345
350 Gln Leu Pro His Asp Trp Leu Leu Arg Asn Gly Thr Thr Tyr Pro Glu
355 360 365 Asp Arg Glu Leu Gly Thr Arg Arg Ala Arg Ala Ala Ala Leu
Met Glu 370 375 380 Leu Gly Leu Pro Gly Ala Ala Tyr Ile Tyr Gln Gly
Glu Glu Leu Gly 385 390 395 400 Leu Phe Glu Val Ala Asp Ile Pro Trp
Asp His Leu Glu Asp Pro Thr 405 410 415 Ala Phe His Thr Ala Gln Ala
Thr Met Asp Lys Gly Arg Asp Gly Cys 420 425 430 Arg Val Pro Leu Pro
Trp Thr Ala Ala Asp Glu Pro Ala Leu Ala Asp 435 440 445 Phe Ser Arg
Pro Thr Pro Ala Asp Asp Gly Thr Gly Glu Asn His Val 450 455 460 Pro
Leu Cys Ala Ala Gly Gln Phe Gly Thr Gly Ala Ser Phe Gly Phe 465 470
475 480 Ser Pro Ala Thr Arg Ala Glu Gly Val Thr Pro Ala Ala Asp Pro
His 485 490 495 Leu Pro Gln Pro Leu Trp Phe Lys Asp Tyr Ala Val Asp
Val Glu Gln 500 505 510 Ala Asp Pro Asp Ser Met Leu Ala Leu Tyr Arg
Ala Ala Leu Ala Ile 515 520 525 Arg Gln Glu Ser Leu Thr Ala Thr Arg
Asp Thr Thr Ala Glu Gln Val 530 535 540 Asp Met Gly Asp Asp Val Val
Ala Tyr Thr Arg Ala Ala Val Gly Gly 545 550 555 560 Arg Val Phe Thr
Ser Ile Thr Asn Phe Gly Asn Ala Pro Val Ala Leu 565 570 575 Pro Asp
Gly Ser Val Val Leu Ala Ser Gly Pro Leu Thr Pro Glu Ala 580 585 590
Gln Leu Pro Thr Asp Thr Ser Ala Trp Val Val Gln 595 600
211812DNAArtificial sequenceBloGlu1_codon-optimized 21gtgacagcaa
ataatcttaa cgatgattgg tggaaacaag cagtggttta ccaaatctac 60ccgagatcat
ttaaagacgt taatggcgac ggactgggag atattgcggg cgtgacagag
120aaaatggact atctgaagaa tctgggagtg gatgcgattt ggctgtcacc
gttctatccg 180agcgatctgg ctgacggagg ctacgatgtc attgattata
gaaatgtgga tccgagactt 240ggcacgatgg aggatttcga cgcgatggcg
aaggcagccc atgaagcagg cattaaggtt 300attgtcgata ttgttccgaa
tcatacggcg gacaaacatg tgttttttca agaggcactt 360gccgctgaac
ctggaagccc ggctagagat agatacattt tcagagatgg cagaggcgaa
420cacggcgagc ttcctcctaa cgactggcaa tcattcttcg gaggccctgc
atgggcaaga 480gtggcggacg gccaatggta cctgcatctt tttgataagg
cacagccgga tgttaattgg 540aaaaatcctg atattcacga agagtttaag
aaaacactta gattctggtc agatcatggc 600acggacggat ttagaattga
tgtcgcacac ggccttgcga aagatctgga gtcaaaaccg 660cttgaggagc
ttggaagaga atatagcgtg gttggagttc tgaatcatga cttcagccac
720cctctgtttg acagaagaga ggttcatgac atttatagag aatggagaaa
agttttcaat 780gaatatgatc cgccgagatt tgcggttgct gaggcctggg
ttgtgcctga gcatcaacat 840ctgtacgctt caatggacga gcttggccag
tcattcaact ttgattttgc ccaagcaaat 900tggtatgcag atgaatttag
agaggctatt gctgctggcc tgaaagcagc ggctgaaacg 960ggaggatcaa
cgacaacatg ggttatgaat aatcacgatg ttcctagatc accgtcaaga
1020tatggcctgc ctcagattaa gggcgcaccg tatcaccagc ttccgcacga
ttggctgctt 1080agaaacggca cgacgtaccc ggaagataga gagctgggaa
caagaagagc aagagcagca 1140gctctgatgg aactgggact gcctggcgca
gcatacatct atcaaggcga agaacttgga 1200cttttcgaag ttgcagacat
tccgtgggat catctggaag atcctacagc atttcacaca 1260gcccaggcga
caatggataa gggcagagac ggatgtagag tcccgctgcc gtggacagct
1320gccgatgagc ctgcactggc agacttctca agaccgacac cggccgacga
cggaacaggc 1380gagaaccatg tgccgctttg tgcagccggc cagtttggca
caggcgctag ctttggattt 1440tcaccggcga cgagagcgga aggcgtcaca
cctgctgcag atcctcacct gccgcaacct 1500ctgtggttca aggattatgc
tgttgacgtt gagcaagcag acccggactc aatgcttgca 1560ctgtatagag
cggccctggc tattagacaa gaaagcctta cggcaacgag agacacgaca
1620gcggagcaag ttgatatggg cgatgatgtt gttgcttata caagagccgc
agttggcgga 1680agagtcttta cgtcaattac aaattttggc aatgcaccgg
ttgcacttcc ggatggctca 1740gttgttctgg catcaggccc gcttacacct
gaagcacaac tgcctacaga tacgtcagca 1800tgggtcgttc aa
181222604PRTBifidobacterium longum 22Met Thr Ala Asn Asn Leu Asn
Asp Asp Trp Trp Lys Gln Ala Val Val 1 5 10 15 Tyr Gln Ile Tyr Pro
Arg Ser Phe Lys Asp Val Asn Gly Asp Gly Leu 20 25 30 Gly Asp Ile
Ala Gly Val Thr Glu Lys Met Asp Tyr Leu Lys Asn Leu 35 40 45 Gly
Val Asp Ala Ile Trp Leu Ser Pro Phe Tyr Pro Ser Asp Leu Ala 50 55
60 Asp Gly Gly Tyr Asp Val Ile Asp Tyr Arg Asn Val Asp Pro Arg Leu
65 70 75 80 Gly Thr Met Glu Asp Phe Asp Ala Met Ala Lys Ala Ala His
Glu Ala 85 90 95 Gly Ile Lys Val Ile Val Asp Ile Val Pro Asn His
Thr Ala Asp Lys 100 105 110 His Val Phe Phe Gln Glu Ala Leu Ala Ala
Glu Pro Gly Ser Pro Ala 115 120 125 Arg Asp Arg Tyr Ile Phe Arg Asp
Gly Arg Gly Glu His Gly Glu Leu 130 135 140 Pro Pro Asn Asp Trp Gln
Ser Phe Phe Gly Gly Pro Ala Trp Ala Arg 145 150 155 160 Val Ala Asp
Gly Gln Trp Tyr Leu His Leu Phe Asp Lys Ala Gln Pro 165 170 175 Asp
Val Asn Trp Lys Asn Pro Asp Ile His Glu Glu Phe Lys Lys Thr 180 185
190 Leu Arg Phe Trp Ser Asp His Gly Thr Asp Gly Phe Arg Ile Asp Val
195 200 205 Ala His Gly Leu Ala Lys Asp Leu Glu Ser Lys Pro Leu Glu
Glu Leu 210 215 220 Gly Arg Glu Tyr Ser Val Val Gly Val Leu Asn His
Asp Phe Ser His 225 230 235 240 Pro Leu Phe Asp Arg Arg Glu Val His
Asp Ile Tyr Arg Glu Trp Arg 245 250 255 Lys Val Phe Asn Glu Tyr Asp
Pro Pro Arg Phe Ala Val Ala Glu Ala 260 265 270 Trp Val Val Pro Glu
His Gln His Leu Tyr Ala Ser Met Asp Glu Leu 275 280 285 Gly Gln Ser
Phe Asn Phe Asp Phe Ala Gln Ala Asn Trp Tyr Ala Asp 290 295 300 Glu
Phe Arg Glu Ala Ile Ala Ala Gly Leu Lys Ala Ala Ala Glu Thr 305 310
315 320 Gly Gly Ser Thr Thr Thr Trp Val Met Asn Asn His Asp Val Pro
Arg 325 330 335 Ser Pro Ser Arg Tyr Gly Leu Pro Gln Ile Lys Gly Ala
Pro Tyr His 340 345 350 Gln Leu Pro His Asp Trp Leu Leu Arg Asn Gly
Thr Thr Tyr Pro Glu 355 360 365 Asp Arg Glu Leu Gly Thr Arg Arg Ala
Arg Ala Ala Ala Leu Met Glu 370 375 380 Leu Gly Leu Pro Gly Ala Ala
Tyr Ile Tyr Gln Gly Glu Glu Leu Gly 385 390 395 400 Leu Phe Glu Val
Ala Asp Ile Pro Trp Asp His Leu Glu Asp Pro Thr 405 410 415 Ala Phe
His Thr Ala Gln Ala Thr Met Asp Lys Gly Arg Asp Gly Cys 420 425 430
Arg Val Pro Leu Pro Trp Thr Ala Ala Asp Glu Pro Ala Leu Ala Asp 435
440 445 Phe Ser Arg Pro Thr Pro Ala Asp Asp Gly Thr Gly Glu Asn His
Val 450 455 460 Pro Leu Cys Ala Ala Gly Gln Phe Gly Thr Gly Ala Ser
Phe Gly Phe 465 470 475 480 Ser Pro Ala Thr Arg Ala Glu Gly Val Thr
Pro Ala Ala Asp Pro His 485 490 495 Leu Pro Gln Pro Leu Trp Phe Lys
Asp Tyr Ala Val Asp Val Glu Gln 500 505 510 Ala Asp Pro Asp Ser Met
Leu Ala Leu Tyr Arg Ala Ala Leu Ala Ile 515 520 525 Arg Gln Glu Ser
Leu Thr Ala Thr Arg Asp Thr Thr Ala Glu Gln Val 530 535 540 Asp Met
Gly Asp Asp Val Val Ala Tyr Thr Arg Ala Ala Val Gly Gly 545 550 555
560 Arg Val Phe Thr Ser Ile Thr Asn Phe Gly Asn Ala Pro Val Ala Leu
565 570 575 Pro Asp Gly Ser Val Val Leu Ala Ser Gly Pro Leu Thr Pro
Glu Ala 580 585 590 Gln Leu Pro Thr Asp Thr Ser Ala Trp Val Val Gln
595 600 231812DNAArtificial sequenceBloGlu2_codon-optimized
23gtgacggcaa acaatctgaa tgatgattgg tggaaacaag cagtggtcta tcagatttat
60cctagatcat ttaaggatgt taatggcgac ggcctgggag atattgcagg cgtgacggaa
120aaaatggatt atctgaagaa tctgggcgtt gacgccattt ggctgtcacc
gttttacccg 180agcgacctgg ccgatggcgg ctatgacgtg attgattata
gaaatgttga cccgagactg 240ggcacgatgg acgattttga cgcaatggct
gaagccgcac acgaggctgg cattaaagtt 300attgttgata ttgtcccgaa
ccacacagca gacaagcacg tttttttcaa agaagcgctg 360gcaagcgaac
ctggctcacc ggcgagagac agatacattt ttagagacgg aagaggagag
420catggcgaac tgcctccgaa cgattggcaa tcattctttg gcggacctgc
ttgggctaga 480gtcccggacg gccaatggta ccttcacctg ttcgataaag
ctcagccgga tgtgaattgg 540aaaaatcctg atatccatga agagtttaag
aagacgctta gattttggtc agatcatgga 600acggatggat tcagaattga
tgttgcacac ggacttgcaa aggatcttga atcaaaacct 660cttgaagagc
ttggaagaga atactcagtc gttggcgttc ttaatcacga cttttcacac
720ccgctttttg acagaagaga ggtgcatgat atttacagag aatggagaaa
agttttcaat 780gaatatacac cgccgagatt cgcagtcgcc gaggcgtggg
tggtgcctga acatcagcat 840ctttatgcat caatggatga acttggccag
tcatttaact tcgatttcgc tcaagcaaat 900tggtacgctg atgaatttag
aaaagcaatc gctgccggcc tgaaagcagc ggcagaaaca 960ggaggaagca
cgacaacatg ggtcatgaac aatcatgacg tccctagatc accgtcaaga
1020tacggccttc ctcaggttaa aggcgcaccg tatcaccaac ttccgcacga
ctggctgctg 1080agagatggca cgacgtatcc ggaggataga gaactgggaa
caagaagagc aagagcggct 1140gccctgatgg agctgggact gcctggagca
gcctatatct atcaaggcga ggaacttgga 1200ctgtttgagg ttgctgacat
tccttgggat agactggaag atccgacagc gtttcataca 1260gctcaggcga
caatggacaa gggcagagat ggatgcagag ttccgcttcc gtggacggcg
1320tcagacgaac cggcacttgc agacttctca agacctgccc ctgcagacga
cggcacaggc 1380gagaatcatg ttcctctgtg cgctgctgga caattcggaa
caggcgcttc attcggcttt 1440agccctgccg ttagagcaga cggagttaca
cctgcggccg acccgcatct gcctcaaccg 1500ctttggttta aagattatgc
agtggatgtc gagcaagcag atccggactc aatgtatacg 1560ctgtatcacg
ctgcactggc aattagacaa gaatcactga cagctacaag agatacaaca
1620gctgagcagg tggacatggg agcagatgtg gttgcatata gaagagccgc
ggtcgaagga 1680agaacattta cgtcagttac gaactttggc acagctccgg
tttcactgcc ggaaggctca 1740gtggtgctga cgagcggacc gcttacgcct
gacggacagc tgccgacaga cacaagcgca 1800tgggttatta ag
181224604PRTBifidobacterium longum 24Met Thr Ala Asn Asn Leu Asn
Asp Asp Trp Trp Lys Gln Ala Val Val 1 5 10 15 Tyr Gln Ile Tyr Pro
Arg Ser Phe Lys Asp Val Asn Gly Asp Gly Leu 20 25 30 Gly Asp Ile
Ala Gly Val Thr Glu Lys Met Asp Tyr Leu Lys Asn Leu 35 40 45 Gly
Val Asp Ala Ile Trp Leu Ser Pro Phe Tyr Pro Ser Asp Leu Ala 50 55
60 Asp Gly Gly Tyr Asp Val Ile Asp Tyr Arg Asn Val Asp Pro Arg Leu
65 70 75 80 Gly Thr Met Asp Asp Phe Asp Ala Met Ala Glu Ala Ala His
Glu Ala 85 90 95 Gly Ile Lys Val Ile Val Asp Ile Val Pro Asn His
Thr Ala Asp Lys 100 105 110 His Val Phe Phe Lys Glu Ala Leu Ala Ser
Glu Pro Gly Ser Pro Ala 115 120 125 Arg Asp Arg Tyr Ile Phe Arg Asp
Gly Arg Gly Glu His Gly Glu Leu 130 135 140 Pro Pro Asn Asp Trp Gln
Ser Phe Phe Gly Gly Pro Ala Trp Ala Arg 145 150 155 160 Val Pro Asp
Gly Gln Trp Tyr Leu His Leu Phe Asp Lys Ala Gln Pro 165 170 175 Asp
Val Asn Trp Lys Asn Pro Asp Ile His Glu Glu Phe Lys Lys Thr 180 185
190 Leu Arg Phe Trp Ser Asp His Gly Thr Asp Gly Phe Arg Ile Asp Val
195 200 205 Ala His Gly Leu Ala Lys Asp Leu Glu Ser Lys Pro Leu Glu
Glu Leu 210 215 220 Gly Arg Glu Tyr Ser Val Val Gly Val Leu Asn His
Asp Phe Ser His 225 230 235 240 Pro Leu Phe Asp Arg Arg Glu Val His
Asp Ile Tyr Arg Glu Trp Arg 245 250 255 Lys Val Phe Asn Glu Tyr Thr
Pro Pro Arg Phe Ala Val Ala Glu Ala 260 265 270 Trp Val Val Pro Glu
His Gln His Leu Tyr Ala Ser Met Asp Glu Leu 275 280 285 Gly Gln Ser
Phe Asn Phe Asp Phe Ala Gln Ala Asn Trp Tyr Ala Asp 290 295 300 Glu
Phe Arg Lys Ala Ile Ala Ala Gly Leu Lys Ala Ala Ala Glu Thr 305 310
315 320 Gly Gly Ser Thr Thr Thr Trp Val Met Asn Asn His Asp Val Pro
Arg 325 330 335 Ser Pro Ser Arg Tyr Gly Leu Pro Gln Val Lys Gly Ala
Pro Tyr His 340 345 350 Gln Leu Pro His Asp Trp Leu Leu Arg Asp Gly
Thr Thr Tyr Pro Glu 355 360 365 Asp Arg Glu Leu Gly Thr Arg Arg Ala
Arg Ala Ala Ala Leu Met Glu 370 375 380 Leu Gly Leu Pro Gly Ala Ala
Tyr Ile Tyr Gln Gly Glu Glu Leu Gly 385 390 395 400 Leu Phe Glu Val
Ala Asp Ile Pro Trp Asp Arg Leu Glu Asp Pro Thr 405 410 415 Ala Phe
His Thr Ala Gln Ala Thr Met Asp Lys Gly Arg Asp Gly Cys 420 425 430
Arg Val Pro Leu Pro Trp Thr Ala Ser Asp Glu Pro Ala Leu Ala Asp 435
440 445 Phe Ser Arg Pro Ala Pro Ala Asp Asp Gly Thr Gly Glu Asn His
Val 450 455 460 Pro Leu Cys Ala Ala Gly Gln Phe Gly Thr Gly Ala Ser
Phe Gly Phe 465 470 475 480 Ser Pro Ala Val Arg Ala Asp Gly Val Thr
Pro Ala Ala Asp Pro His 485 490 495 Leu Pro Gln Pro Leu Trp Phe Lys
Asp Tyr Ala Val Asp Val Glu Gln 500 505 510 Ala Asp Pro Asp Ser Met
Tyr Thr Leu Tyr His Ala Ala Leu Ala Ile 515 520 525 Arg Gln Glu Ser
Leu Thr Ala Thr Arg Asp Thr Thr Ala Glu Gln Val 530 535 540 Asp Met
Gly Ala Asp Val Val Ala Tyr Arg Arg Ala Ala Val Glu Gly 545 550 555
560 Arg Thr Phe Thr Ser Val Thr Asn Phe Gly Thr Ala Pro Val Ser Leu
565 570 575 Pro Glu Gly Ser Val Val Leu Thr Ser Gly Pro Leu Thr Pro
Asp Gly 580 585 590 Gln Leu Pro Thr Asp Thr Ser Ala Trp Val Ile Lys
595 600 251815DNABifidobacterium longum 25atgaccgcca acaacctcaa
tgacgactgg tggaagcagg ccgtcgtcta ccagatctac 60ccgcgcagct tcaaggacgt
caacggcgac ggactcggcg acatcgccgg cgtcaccgag 120aagatggatt
acctgaagaa cctcggcgtc gacgcgatct ggctctcccc gttctacccc
180tcggatctgg cggacggcgg ctacgacgtg atcgactacc gcaacgtcga
cccgcgccta 240ggcaccatgg acgacttcga cgcgatggcc gaggccgcgc
acgaggccgg catcaaagtg 300atcgtggaca tcgtgcccaa ccacaccgcc
gacaagcacg tgttcttcaa ggaagccctc 360gcctccgaac ctggctcccc
cgcacgcgat cgctatatct tccgtgacgg ccgcggcgag 420cacggcgaac
tgccgccgaa cgactggcag tccttcttcg gcggcccggc ctgggcgcgc
480gtgcccgacg gccagtggta cctgcatctg ttcgacaagg cgcagccgga
cgtcaactgg 540aagaatccgg acatccacga ggagttcaaa aagaccctgc
gcttctggtc cgaccacggc 600accgacggct tccgcatcga cgtagcgcac
ggcctggcca aagaccttga atccaagccg 660ctggaggagc tcggccgcga
atacagcgtg gtcggcgtgc tgaaccacga cttcagccac 720ccgctgttcg
accgccgcga ggtgcacgac atctaccgcg aatggcgcaa ggtgttcaac
780gaatacactc cgccgcgctt cgccgtggcc gaggcgtggg tggtgcccga
gcaccagcac 840ctgtacgctt
cgatggacga gctgggccag tccttcaact tcgacttcgc gcaggccaac
900tggtatgccg acgagttccg caaggccatc gccgccgggc tcaaggcggc
ggccgaaacc 960ggcggctcca ccaccacgtg ggtcatgaac aatcatgacg
tgccgcgcag cccctcccgc 1020tatggtctgc cgcaggtcaa gggcgcgccg
tatcaccagc tgccacacga ctggctgctg 1080cgcgacggca ccacctaccc
ggagaaccgc gaactcggca cccgccgtgc ccgtgccgcc 1140gcgctgatgg
agctcggcct gcccggtgcc gcatacatct atcagggcga ggaactgggc
1200ctgtttgagg tggccgatat tccgtgggat cacttggagg atccgaccgc
cttccacacc 1260acccgcaaca cgatggacaa gggccgcgac ggctgccgcg
tgccgctgcc gtggaccgcc 1320gccgatgagc cggccttggc cgatttcagc
cgtccggctc cggccgatga cggtaccggc 1380gaaaaccatg tgccgctgtg
cgccgccggc cagttcggca cgggcgcttc cttcggcttc 1440tcccctgcgg
ttcgcgccga tggcgtgacg ccggccgccg acccgcacct gccgcagccg
1500ctgtggttca aggattacgc ggtggacgtg gagcaagccg acccggactc
gatgctcgcg 1560ctgtatcgcg ccgcactggc gattcgccag gagtcgctga
ccgccacgcg cgacaccacg 1620gccgagcagg tggacatggg cgacgatgtg
gtggcgtaca cccgcgcggc ggttggcggg 1680cgggtgttca cctcaatcac
caacttcggc aatgccccgg tcgcgctgcc cgatggctcc 1740gtggtgctgg
cgtccggccc gctgaccccc gaaggccagc tccccaccga cacttctgcg
1800tgggttatca agtag 181526604PRTBifidobacterium longum 26Met Thr
Ala Asn Asn Leu Asn Asp Asp Trp Trp Lys Gln Ala Val Val 1 5 10 15
Tyr Gln Ile Tyr Pro Arg Ser Phe Lys Asp Val Asn Gly Asp Gly Leu 20
25 30 Gly Asp Ile Ala Gly Val Thr Glu Lys Met Asp Tyr Leu Lys Asn
Leu 35 40 45 Gly Val Asp Ala Ile Trp Leu Ser Pro Phe Tyr Pro Ser
Asp Leu Ala 50 55 60 Asp Gly Gly Tyr Asp Val Ile Asp Tyr Arg Asn
Val Asp Pro Arg Leu 65 70 75 80 Gly Thr Met Asp Asp Phe Asp Ala Met
Ala Glu Ala Ala His Glu Ala 85 90 95 Gly Ile Lys Val Ile Val Asp
Ile Val Pro Asn His Thr Ala Asp Lys 100 105 110 His Val Phe Phe Lys
Glu Ala Leu Ala Ser Glu Pro Gly Ser Pro Ala 115 120 125 Arg Asp Arg
Tyr Ile Phe Arg Asp Gly Arg Gly Glu His Gly Glu Leu 130 135 140 Pro
Pro Asn Asp Trp Gln Ser Phe Phe Gly Gly Pro Ala Trp Ala Arg 145 150
155 160 Val Pro Asp Gly Gln Trp Tyr Leu His Leu Phe Asp Lys Ala Gln
Pro 165 170 175 Asp Val Asn Trp Lys Asn Pro Asp Ile His Glu Glu Phe
Lys Lys Thr 180 185 190 Leu Arg Phe Trp Ser Asp His Gly Thr Asp Gly
Phe Arg Ile Asp Val 195 200 205 Ala His Gly Leu Ala Lys Asp Leu Glu
Ser Lys Pro Leu Glu Glu Leu 210 215 220 Gly Arg Glu Tyr Ser Val Val
Gly Val Leu Asn His Asp Phe Ser His 225 230 235 240 Pro Leu Phe Asp
Arg Arg Glu Val His Asp Ile Tyr Arg Glu Trp Arg 245 250 255 Lys Val
Phe Asn Glu Tyr Thr Pro Pro Arg Phe Ala Val Ala Glu Ala 260 265 270
Trp Val Val Pro Glu His Gln His Leu Tyr Ala Ser Met Asp Glu Leu 275
280 285 Gly Gln Ser Phe Asn Phe Asp Phe Ala Gln Ala Asn Trp Tyr Ala
Asp 290 295 300 Glu Phe Arg Lys Ala Ile Ala Ala Gly Leu Lys Ala Ala
Ala Glu Thr 305 310 315 320 Gly Gly Ser Thr Thr Thr Trp Val Met Asn
Asn His Asp Val Pro Arg 325 330 335 Ser Pro Ser Arg Tyr Gly Leu Pro
Gln Val Lys Gly Ala Pro Tyr His 340 345 350 Gln Leu Pro His Asp Trp
Leu Leu Arg Asp Gly Thr Thr Tyr Pro Glu 355 360 365 Asn Arg Glu Leu
Gly Thr Arg Arg Ala Arg Ala Ala Ala Leu Met Glu 370 375 380 Leu Gly
Leu Pro Gly Ala Ala Tyr Ile Tyr Gln Gly Glu Glu Leu Gly 385 390 395
400 Leu Phe Glu Val Ala Asp Ile Pro Trp Asp His Leu Glu Asp Pro Thr
405 410 415 Ala Phe His Thr Thr Arg Asn Thr Met Asp Lys Gly Arg Asp
Gly Cys 420 425 430 Arg Val Pro Leu Pro Trp Thr Ala Ala Asp Glu Pro
Ala Leu Ala Asp 435 440 445 Phe Ser Arg Pro Ala Pro Ala Asp Asp Gly
Thr Gly Glu Asn His Val 450 455 460 Pro Leu Cys Ala Ala Gly Gln Phe
Gly Thr Gly Ala Ser Phe Gly Phe 465 470 475 480 Ser Pro Ala Val Arg
Ala Asp Gly Val Thr Pro Ala Ala Asp Pro His 485 490 495 Leu Pro Gln
Pro Leu Trp Phe Lys Asp Tyr Ala Val Asp Val Glu Gln 500 505 510 Ala
Asp Pro Asp Ser Met Leu Ala Leu Tyr Arg Ala Ala Leu Ala Ile 515 520
525 Arg Gln Glu Ser Leu Thr Ala Thr Arg Asp Thr Thr Ala Glu Gln Val
530 535 540 Asp Met Gly Asp Asp Val Val Ala Tyr Thr Arg Ala Ala Val
Gly Gly 545 550 555 560 Arg Val Phe Thr Ser Ile Thr Asn Phe Gly Asn
Ala Pro Val Ala Leu 565 570 575 Pro Asp Gly Ser Val Val Leu Ala Ser
Gly Pro Leu Thr Pro Glu Gly 580 585 590 Gln Leu Pro Thr Asp Thr Ser
Ala Trp Val Ile Lys 595 600 271812DNAArtificial
sequenceBloGlu3_codon-optimized 27gtgacagcaa acaacctgaa tgacgactgg
tggaaacagg ccgtcgtgta tcaaatttac 60cctagatcat ttaaggacgt taatggcgat
ggactgggag atattgcagg cgtcacggag 120aagatggatt accttaaaaa
cctgggcgtt gatgctattt ggctgtcacc gttttacccg 180tcagacctgg
ctgatggcgg ctatgacgtt atcgattata gaaatgtgga tcctagactg
240ggcacaatgg atgattttga cgcaatggcc gaagccgcgc atgaagcggg
aattaaagtt 300attgttgata tcgttcctaa tcatacagca gataagcatg
tttttttcaa agaagcactg 360gcctcagaac cgggctcacc tgcaagagat
agatacattt ttagagacgg aagaggcgaa 420cacggcgagc tgcctccgaa
tgactggcaa tcattttttg gaggacctgc atgggcaaga 480gtccctgacg
gacaatggta tctgcacctt ttcgataaag cacaaccgga tgttaattgg
540aaaaaccctg acatccatga agaatttaag aaaacactga gattttggtc
agatcacggc 600acagacggat ttagaattga tgtggcacat ggacttgcaa
aagatctgga aagcaaaccg 660ctggaggaac tgggaagaga gtacagcgtt
gttggcgttc ttaatcatga cttttcacat 720ccgctgtttg acagaagaga
agtgcatgac atctacagag aatggagaaa ggtgtttaac 780gaatatacac
cgccgagatt tgcagtcgca gaagcatggg tggtgcctga acaccaacat
840ctgtatgcat caatggacga gctgggccaa tcattcaatt tcgactttgc
acaagctaat 900tggtatgcag atgagttcag aaaagctatc gctgcgggcc
tgaaagcagc agctgagacg 960ggcggatcaa cgacaacatg ggtcatgaat
aatcacgatg ttccgagatc accgtcaaga 1020tatggcctgc cgcaggttaa
gggcgcaccg tatcatcagc ttccgcacga ttggcttctg 1080agagacggca
cgacgtaccc ggagaataga gagctgggaa cgagaagagc aagagcagcg
1140gcgcttatgg aacttggact gcctggagcg gcttacattt atcagggcga
ggagcttggc 1200ctttttgagg tggcagatat tccttgggat catcttgaag
atccgacagc atttcacaca 1260acaagaaata cgatggataa aggcagagat
ggctgcagag tgcctctgcc gtggacagct 1320gccgatgagc ctgcccttgc
cgactttagc agaccggcac ctgccgacga cggaacggga 1380gagaaccacg
ttcctctgtg tgcagcgggc cagtttggca cgggagcatc atttggattc
1440tcaccggccg ttagagccga tggcgttaca ccggctgcgg acccgcatct
gcctcagccg 1500ctgtggttta aagattatgc agttgacgtt gaacaagccg
atcctgattc aatgctggca 1560ctgtatagag ctgcacttgc tattagacaa
gaatcactta cggcaacgag agatacaacg 1620gcggaacagg tcgacatggg
cgatgatgtc gtcgcatata cgagagcggc cgtgggagga 1680agagttttta
caagcattac aaattttggc aacgcacctg tcgcactgcc ggatggcagc
1740gtcgttctgg cttcaggacc tctgacaccg gagggacaac tgcctacaga
cacgtcagct 1800tgggttatta ag 181228585PRTBifidobacterium
pseudolongum 28Met Thr Leu Asn Asn Thr His Asp Asp Trp Trp Lys Gln
Ala Val Val 1 5 10 15 Tyr Gln Val Tyr Pro Arg Ser Phe Arg Asp Ala
Asn Gly Asp Gly Leu 20 25 30 Gly Asp Ile Ala Gly Ile Thr Ser Arg
Ile Pro Tyr Leu Arg Gln Leu 35 40 45 Gly Val Asp Ala Leu Trp Leu
Ser Pro Phe Tyr Pro Ser Glu Leu Ala 50 55 60 Asp Gly Gly Tyr Asp
Val Ile Asp Tyr Arg Asn Val Asp Pro Arg Leu 65 70 75 80 Gly Thr Leu
Asp Asp Phe Asp Ala Met Val Ala Ala Ala His Ser Ala 85 90 95 Gly
Leu Lys Val Val Val Asp Ile Val Pro Asn His Thr Ser Asn Met 100 105
110 His Pro Trp Phe Gln Glu Ala Leu Ala Ser Ala Pro Gly Ser Pro Ala
115 120 125 Arg Asp Arg Tyr Ile Phe Arg Asp Gly Glu Gly Ala His Gly
Glu Leu 130 135 140 Pro Pro Asn Asn Trp Gln Ser Leu Phe Gly Gly Pro
Ala Trp Glu Ala 145 150 155 160 Ala Gly Asp Gly Gln Trp Tyr Leu His
Leu Phe Thr Lys Glu Gln Pro 165 170 175 Asp Leu Asn Trp Lys Asn Pro
Asp Val His Glu Asp Phe Arg Thr Thr 180 185 190 Leu Arg Phe Trp Ser
Asp Arg Gly Val Asp Gly Phe Arg Ile Asp Val 195 200 205 Ala His Gly
Leu Ala Lys Asp Leu Asp Ser Glu Pro Leu Lys Asp Leu 210 215 220 Glu
Arg Phe Pro Val Gly Gly Asn Pro Val Pro Gly His Pro Leu Trp 225 230
235 240 Asp Arg Pro Glu Val His Glu Ile Tyr Arg Glu Trp Asn Lys Val
Phe 245 250 255 Asn Glu Tyr Asp Pro Pro Arg Phe Ala Val Gly Glu Ala
Trp Val Pro 260 265 270 Ala Glu His Gln His Leu Tyr Ala Ser Lys Asp
Glu Leu Gly Gln Val 275 280 285 Phe Asn Phe Glu Phe Ala Lys Ala Asn
Trp Phe Ala Asp Asp Phe Arg 290 295 300 Leu Ala Ile Glu Glu Gly Leu
Ala Ser Ala Asp Glu Ser Lys Ser Thr 305 310 315 320 Thr Thr Trp Val
Met Ser Asn His Asp Val Pro Arg His Val Ser Arg 325 330 335 Tyr Gly
Leu Pro Gln Val His Thr Arg Gly Tyr His Glu Leu Pro Asn 340 345 350
Asp Trp Leu Leu Arg Asn Gly Thr Thr Tyr Ile Glu Asp Arg Glu Leu 355
360 365 Gly Thr Arg Arg Ala Arg Ala Ala Ile Leu Met Glu Leu Gly Leu
Pro 370 375 380 Gly Ser Val Tyr Val Tyr Gln Gly Glu Glu Leu Gly Leu
Pro Glu Val 385 390 395 400 Ala Thr Ile Pro Trp Asp His Leu Glu Asp
Pro Val Ala Phe Asn Thr 405 410 415 Asp His Ser Asp Ala Ala Lys Gly
Arg Asp Gly Cys Arg Val Pro Leu 420 425 430 Pro Trp Ser Ala Gln Asp
Met Pro Gln Pro Ala Pro Trp Asp Pro Glu 435 440 445 Phe Gly Thr Gly
Ala Ser Phe Gly Phe Ser Glu His Ala Gly Gly Arg 450 455 460 Ala Ser
Ala Asp Pro His Leu Pro Gln Pro Leu Trp Tyr Ala Gly Tyr 465 470 475
480 Ala Ala Asp Met Glu Asp Thr Asp Pro Ala Ser Met Leu Asn Leu Tyr
485 490 495 Arg Arg Ala Met His Trp Arg Gln Glu His Leu Thr Pro Thr
Gly Asp 500 505 510 Thr Ser Leu Thr Trp Leu Ser Pro Gln Ser Phe Ala
Asp Cys Gly Asp 515 520 525 Asp Val Val Ala Tyr Ala Arg Pro Leu Ala
Asp Asp Ser Gly Asp Arg 530 535 540 Phe Val Cys Ile Val Asn Phe Gly
Ala Ala Ser Ile Glu Leu Pro His 545 550 555 560 Gly Asp Val Met Met
Arg Ser Ile Pro Phe Asp Gly Tyr Gln Leu Pro 565 570 575 Ala Asp Ala
Ala Val Trp Met Arg Ile 580 585 291755DNAArtificial
sequenceBpsGlu1_codon-optimized 29gtgacactga ataatacaca cgatgactgg
tggaaacaag ccgttgtgta tcaagtttat 60ccgagatcat ttagagacgc taacggcgat
ggactgggag acatcgcagg cattacgagc 120agaatcccgt atcttagaca
acttggcgtg gacgcgcttt ggctttcacc gttttatcct 180agcgagctgg
cagacggcgg atatgatgtt attgattaca gaaatgttga cccgagactt
240ggcacactgg acgactttga tgctatggtg gcggctgccc atagcgcggg
actgaaagtt 300gttgttgata tcgttccgaa tcatacaagc aacatgcacc
cttggttcca agaggcgctg 360gcgagcgcac cgggatcacc tgcgagagat
agatacattt tcagagatgg agaaggcgca 420cacggcgagc ttccgcctaa
caattggcaa agcctgtttg gaggaccggc ctgggaagca 480gcaggcgacg
gacaatggta cctgcacctt tttacaaaag aacagcctga tctgaattgg
540aaaaatcctg acgttcacga ggatttcaga acgacactta gattctggtc
agacagaggc 600gttgatggct ttagaatcga cgttgcacat ggacttgcga
aagacctgga tagcgaaccg 660ctgaaggatc ttgagagatt cccggtcgga
ggaaatccgg ttccgggcca tccgctgtgg 720gatagacctg aagtgcacga
gatttacaga gagtggaata aagtctttaa tgaatacgac 780ccgcctagat
tcgctgttgg cgaagcatgg gtgcctgccg aacatcaaca tctttatgcc
840tcaaaggatg agctgggaca agtgttcaac ttcgaatttg ctaaggcaaa
ttggtttgca 900gatgacttta gactggcaat tgaggagggc ctggcctcag
cggacgagtc aaaatcaacg 960acaacatggg ttatgtcaaa tcacgacgtg
ccgagacacg tgagcagata tggccttccg 1020caagttcata cgagaggcta
tcacgagctg cctaacgatt ggctgctgag aaatggcaca 1080acatatattg
aagatagaga actgggcaca agaagagcaa gagccgcgat cctgatggaa
1140cttggacttc ctggatcagt ttatgtttat caaggcgagg agcttggcct
gcctgaggtg 1200gcaacaattc cttgggacca cctggaagat ccggtcgcct
tcaacacaga tcactcagat 1260gcagcaaaag gaagagacgg atgtagagtg
ccgctgccgt ggtcagctca ggatatgccg 1320cagcctgcgc cgtgggatcc
ggaatttggc acgggcgcat catttggatt ctcagagcat 1380gccggaggca
gagcttcagc agacccgcat ctgccgcaac ctctgtggta tgcaggctat
1440gctgccgata tggaggatac ggatcctgcg tcaatgctga atctgtatag
aagagctatg 1500cactggagac aggagcatct tacacctaca ggcgatacat
cactgacatg gctgtcaccg 1560caatcattcg cagattgcgg agatgatgtc
gtggcatacg caagaccgct ggctgacgat 1620agcggcgaca gatttgtttg
cattgttaac ttcggagcag cgagcatcga actgcctcac 1680ggagacgtta
tgatgagatc aatccctttc gatggatacc agcttcctgc ggacgctgcg
1740gtgtggatga gaatt 175530585PRTArtificial sequenceBpsGlu1
protein_encoded by optimized sequence 30Met Thr Leu Asn Asn Thr His
Asp Asp Trp Trp Lys Gln Ala Val Val 1 5 10 15 Tyr Gln Val Tyr Pro
Arg Ser Phe Arg Asp Ala Asn Gly Asp Gly Leu 20 25 30 Gly Asp Ile
Ala Gly Ile Thr Ser Arg Ile Pro Tyr Leu Arg Gln Leu 35 40 45 Gly
Val Asp Ala Leu Trp Leu Ser Pro Phe Tyr Pro Ser Glu Leu Ala 50 55
60 Asp Gly Gly Tyr Asp Val Ile Asp Tyr Arg Asn Val Asp Pro Arg Leu
65 70 75 80 Gly Thr Leu Asp Asp Phe Asp Ala Met Val Ala Ala Ala His
Ser Ala 85 90 95 Gly Leu Lys Val Val Val Asp Ile Val Pro Asn His
Thr Ser Asn Met 100 105 110 His Pro Trp Phe Gln Glu Ala Leu Ala Ser
Ala Pro Gly Ser Pro Ala 115 120 125 Arg Asp Arg Tyr Ile Phe Arg Asp
Gly Glu Gly Ala His Gly Glu Leu 130 135 140 Pro Pro Asn Asn Trp Gln
Ser Leu Phe Gly Gly Pro Ala Trp Glu Ala 145 150 155 160 Ala Gly Asp
Gly Gln Trp Tyr Leu His Leu Phe Thr Lys Glu Gln Pro 165 170 175 Asp
Leu Asn Trp Lys Asn Pro Asp Val His Glu Asp Phe Arg Thr Thr 180 185
190 Leu Arg Phe Trp Ser Asp Arg Gly Val Asp Gly Phe Arg Ile Asp Val
195 200 205 Ala His Gly Leu Ala Lys Asp Leu Asp Ser Glu Pro Leu Lys
Asp Leu 210 215 220 Glu Arg Phe Pro Val Gly Gly Asn Pro Val Pro Gly
His Pro Leu Trp 225 230 235 240 Asp Arg Pro Glu Val His Glu Ile Tyr
Arg Glu Trp Asn Lys Val Phe 245 250 255 Asn Glu Tyr Asp Pro Pro Arg
Phe Ala Val Gly Glu Ala Trp Val Pro 260 265 270 Ala Glu His Gln His
Leu Tyr Ala Ser Lys Asp Glu Leu Gly Gln Val 275 280 285 Phe Asn Phe
Glu Phe Ala Lys Ala Asn Trp Phe Ala Asp Asp Phe Arg 290 295 300 Leu
Ala Ile Glu Glu Gly Leu Ala Ser Ala Asp Glu Ser Lys Ser Thr 305 310
315 320 Thr Thr Trp Val Met Ser Asn His Asp Val Pro Arg His Val Ser
Arg 325 330 335 Tyr Gly Leu Pro Gln Val His Thr Arg Gly Tyr His Glu
Leu Pro Asn 340 345 350 Asp Trp Leu Leu Arg Asn Gly Thr Thr Tyr Ile
Glu Asp Arg Glu Leu 355 360
365 Gly Thr Arg Arg Ala Arg Ala Ala Ile Leu Met Glu Leu Gly Leu Pro
370 375 380 Gly Ser Val Tyr Val Tyr Gln Gly Glu Glu Leu Gly Leu Pro
Glu Val 385 390 395 400 Ala Thr Ile Pro Trp Asp His Leu Glu Asp Pro
Val Ala Phe Asn Thr 405 410 415 Asp His Ser Asp Ala Ala Lys Gly Arg
Asp Gly Cys Arg Val Pro Leu 420 425 430 Pro Trp Ser Ala Gln Asp Met
Pro Gln Pro Ala Pro Trp Asp Pro Glu 435 440 445 Phe Gly Thr Gly Ala
Ser Phe Gly Phe Ser Glu His Ala Gly Gly Arg 450 455 460 Ala Ser Ala
Asp Pro His Leu Pro Gln Pro Leu Trp Tyr Ala Gly Tyr 465 470 475 480
Ala Ala Asp Met Glu Asp Thr Asp Pro Ala Ser Met Leu Asn Leu Tyr 485
490 495 Arg Arg Ala Met His Trp Arg Gln Glu His Leu Thr Pro Thr Gly
Asp 500 505 510 Thr Ser Leu Thr Trp Leu Ser Pro Gln Ser Phe Ala Asp
Cys Gly Asp 515 520 525 Asp Val Val Ala Tyr Ala Arg Pro Leu Ala Asp
Asp Ser Gly Asp Arg 530 535 540 Phe Val Cys Ile Val Asn Phe Gly Ala
Ala Ser Ile Glu Leu Pro His 545 550 555 560 Gly Asp Val Met Met Arg
Ser Ile Pro Phe Asp Gly Tyr Gln Leu Pro 565 570 575 Ala Asp Ala Ala
Val Trp Met Arg Ile 580 585 311806DNABifidobacterium thermophilum
31atggcagaac gcaagtcccc ccagtccgcg caagaatcca cggcatcgga tcgcgccgca
60gcggcctggt ggcatcaagc ggtggtctat caggtctatc cgcgttcgtt caaggacacc
120accggttccg gcctcggcga catcgccggt gttaccagcc gcatcggcta
cctcaagcaa 180ctgggtgttg acgcgatttg gctcagcccc ttctatccga
gccaactcgc cgatggcggg 240tacgatgtcg atgattaccg caacgtcgac
ccgaaactcg gtacgatgga cgatttcgac 300aaactcgcca aaaccgcgca
cgaggccggt atcaagattg tcgtcgatat cgttcccaac 360cattcttcca
acctgcaccc ctggttcaag gccgcgcttg cagctggtcc gggctcgccg
420gaacgtgacc gctacatctt ccgtgacggc cgcggtgagc atggcgaact
gccgcccacc 480gactgggtgt cccatttcgg cggccccgcg tggacgcgcg
tgcctgacgg ccagtggtat 540ctgcacctgt tcaccgtgga gcagcccgac
tggaactgga agaacccgga tgtgcaggcg 600gacttcatca agaccctgcg
tttttggctt gatcacggcg ctgacggctt ccgtgtcgat 660gttgcgcacg
gcctgtgcaa ggacctcgac cgcgacaatc tcgaccagtg gagcgtcacc
720ccgccaagcc tgcccgccga cggcagccat ccgctgtacg accgcgacga
cgtgcatcag 780atttatcgcg agtggcgcaa ggtgttcaac gaatatgatc
cgccggcatt cgccgtggcc 840gaggcgtggg ttaatcccgc gcggcagtat
ctgtatgcgt ccgacgatga gctcggtcag 900gtgttcaact tcgagttcgc
gaagaagaac tgggtgcgtg acgacatgca tcaggcgatc 960gaggaaggtc
tcgaggcggc gcgtcgttct ggctctaccg ccacgtgggt gatgagtaat
1020cacgatgttc cacgtcacgc cagccgttac gcactgccgc aagtgccgag
cacgcggcat 1080catcagttgg cgcatgactg gctgctgcgt gacggcacca
gctatcacga ggatcgcgaa 1140gccggtacgc gccgcgcccg ggccgcgatt
ttgatggagc ttgcgttgcc cggttcggcg 1200tacctgtacc agggcgaaga
gcttggtctg ttcgaggtcg ctgatattcc gtggaacaag 1260ctcgaggatc
cgaccgcgcg caatagcgaa cgtgcggcca aggacaaggg gcgcgacggg
1320tgccgcgtcc ccctgccgtg ggtcgccgcc gacggggtcg aggggtcgtt
cggcttctcg 1380cctcgtgtga aatccgtggg cgctggcgtt tccgccgatc
aggccgggca gccgtcggag 1440cctgcacacc tgccgcaacc cgcatggttc
gctgatttcg ccgccgaccg tgagagcgcg 1500cagccggagt cgatgttgaa
cctgtaccgc agggcgttgg cgttgcgcca tgagctgatg 1560ccggccgaca
caacgctgac ttggctggat gaagaccgcc cgtctgatgc gccggatggc
1620gctgacggtc agcacggcgg cgtgattgct taccgccggt ccaacggctg
ggcgagtgtg 1680accaatttcg gtgcggaacc tgtcgcattg ccggcgggcg
aggtgctgct cacctccggc 1740gagctgtgct ccgacggccg gctgccgcaa
gataccaccg tttggctgcg gttgaaccag 1800gactga
180632601PRTBifidobacterium thermophilum 32Met Ala Glu Arg Lys Ser
Pro Gln Ser Ala Gln Glu Ser Thr Ala Ser 1 5 10 15 Asp Arg Ala Ala
Ala Ala Trp Trp His Gln Ala Val Val Tyr Gln Val 20 25 30 Tyr Pro
Arg Ser Phe Lys Asp Thr Thr Gly Ser Gly Leu Gly Asp Ile 35 40 45
Ala Gly Val Thr Ser Arg Ile Gly Tyr Leu Lys Gln Leu Gly Val Asp 50
55 60 Ala Ile Trp Leu Ser Pro Phe Tyr Pro Ser Gln Leu Ala Asp Gly
Gly 65 70 75 80 Tyr Asp Val Asp Asp Tyr Arg Asn Val Asp Pro Lys Leu
Gly Thr Met 85 90 95 Asp Asp Phe Asp Lys Leu Ala Lys Thr Ala His
Glu Ala Gly Ile Lys 100 105 110 Ile Val Val Asp Ile Val Pro Asn His
Ser Ser Asn Leu His Pro Trp 115 120 125 Phe Lys Ala Ala Leu Ala Ala
Gly Pro Gly Ser Pro Glu Arg Asp Arg 130 135 140 Tyr Ile Phe Arg Asp
Gly Arg Gly Glu His Gly Glu Leu Pro Pro Thr 145 150 155 160 Asp Trp
Val Ser His Phe Gly Gly Pro Ala Trp Thr Arg Val Pro Asp 165 170 175
Gly Gln Trp Tyr Leu His Leu Phe Thr Val Glu Gln Pro Asp Trp Asn 180
185 190 Trp Lys Asn Pro Asp Val Gln Ala Asp Phe Ile Lys Thr Leu Arg
Phe 195 200 205 Trp Leu Asp His Gly Ala Asp Gly Phe Arg Val Asp Val
Ala His Gly 210 215 220 Leu Cys Lys Asp Leu Asp Arg Asp Asn Leu Asp
Gln Trp Ser Val Thr 225 230 235 240 Pro Pro Ser Leu Pro Ala Asp Gly
Ser His Pro Leu Tyr Asp Arg Asp 245 250 255 Asp Val His Gln Ile Tyr
Arg Glu Trp Arg Lys Val Phe Asn Glu Tyr 260 265 270 Asp Pro Pro Ala
Phe Ala Val Ala Glu Ala Trp Val Asn Pro Ala Arg 275 280 285 Gln Tyr
Leu Tyr Ala Ser Asp Asp Glu Leu Gly Gln Val Phe Asn Phe 290 295 300
Glu Phe Ala Lys Lys Asn Trp Val Arg Asp Asp Met His Gln Ala Ile 305
310 315 320 Glu Glu Gly Leu Glu Ala Ala Arg Arg Ser Gly Ser Thr Ala
Thr Trp 325 330 335 Val Met Ser Asn His Asp Val Pro Arg His Ala Ser
Arg Tyr Ala Leu 340 345 350 Pro Gln Val Pro Ser Thr Arg His His Gln
Leu Ala His Asp Trp Leu 355 360 365 Leu Arg Asp Gly Thr Ser Tyr His
Glu Asp Arg Glu Ala Gly Thr Arg 370 375 380 Arg Ala Arg Ala Ala Ile
Leu Met Glu Leu Ala Leu Pro Gly Ser Ala 385 390 395 400 Tyr Leu Tyr
Gln Gly Glu Glu Leu Gly Leu Phe Glu Val Ala Asp Ile 405 410 415 Pro
Trp Asn Lys Leu Glu Asp Pro Thr Ala Arg Asn Ser Glu Arg Ala 420 425
430 Ala Lys Asp Lys Gly Arg Asp Gly Cys Arg Val Pro Leu Pro Trp Val
435 440 445 Ala Ala Asp Gly Val Glu Gly Ser Phe Gly Phe Ser Pro Arg
Val Lys 450 455 460 Ser Val Gly Ala Gly Val Ser Ala Asp Gln Ala Gly
Gln Pro Ser Glu 465 470 475 480 Pro Ala His Leu Pro Gln Pro Ala Trp
Phe Ala Asp Phe Ala Ala Asp 485 490 495 Arg Glu Ser Ala Gln Pro Glu
Ser Met Leu Asn Leu Tyr Arg Arg Ala 500 505 510 Leu Ala Leu Arg His
Glu Leu Met Pro Ala Asp Thr Thr Leu Thr Trp 515 520 525 Leu Asp Glu
Asp Arg Pro Ser Asp Ala Pro Asp Gly Ala Asp Gly Gln 530 535 540 His
Gly Gly Val Ile Ala Tyr Arg Arg Ser Asn Gly Trp Ala Ser Val 545 550
555 560 Thr Asn Phe Gly Ala Glu Pro Val Ala Leu Pro Ala Gly Glu Val
Leu 565 570 575 Leu Thr Ser Gly Glu Leu Cys Ser Asp Gly Arg Leu Pro
Gln Asp Thr 580 585 590 Thr Val Trp Leu Arg Leu Asn Gln Asp 595 600
331803DNAArtificial sequenceBthGlu1_codon-optimized 33gtggctgaaa
gaaaatcacc gcaaagcgca caggaaagca cggcctcaga cagagcagcc 60gcagcctggt
ggcatcaggc cgttgtttat caagtttatc ctagatcatt caaggataca
120acgggctcag gactgggcga tattgcagga gttacaagca gaatcggcta
ccttaagcaa 180cttggagtcg atgctatttg gctgtcaccg ttttacccgt
cacaactggc cgatggcggc 240tacgatgttg atgactacag aaacgtggat
cctaaactgg gcacaatgga tgattttgat 300aagctggcaa aaacagcaca
tgaggcggga atcaagattg ttgttgatat cgttccgaat 360catagctcaa
atctgcatcc gtggtttaaa gcagcactgg cagccggacc gggcagcccg
420gagagagata gatacatttt cagagacggc agaggcgaac atggcgaact
gcctcctaca 480gactgggttt cacattttgg aggaccggct tggacaagag
ttcctgatgg ccagtggtac 540ctgcatcttt ttacggttga acagcctgat
tggaattgga aaaaccctga cgtccaggcg 600gacttcatta aaacacttag
attctggctg gaccatggag cggatggctt tagagttgac 660gttgcacatg
gcctttgtaa ggaccttgac agagacaacc ttgatcagtg gtcagttacg
720ccgccttcac tgcctgctga cggatcacac ccgctttatg atagagacga
cgttcatcag 780atttatagag aatggagaaa agtttttaac gaatacgatc
ctcctgcgtt tgcagtggca 840gaagcgtggg ttaatccggc tagacaatat
ctttatgcaa gcgacgacga gctgggacaa 900gttttcaact ttgaatttgc
caaaaagaat tgggtcagag atgatatgca tcaagcgatt 960gaagaaggcc
tggaagctgc tagaagaagc ggcagcacag caacatgggt tatgtcaaac
1020catgatgtgc cgagacacgc gtcaagatac gcacttcctc aagttccgag
cacaagacat 1080caccaacttg ctcatgactg gcttctgaga gacggaacgt
cataccacga ggatagagag 1140gctggaacaa gaagagccag agccgcaatt
ctgatggagc tggccctgcc gggatcagca 1200tatctgtatc agggcgaaga
actgggactg tttgaggttg cagacattcc gtggaataag 1260ctggaagatc
cgacagcaag aaattcagaa agagcggcga aagacaaagg aagagatgga
1320tgtagagtgc cgctgccttg ggtcgctgcc gacggagttg agggctcatt
tggattctca 1380cctagagtta agagcgtcgg agcgggagtt tcagcagacc
aggccggaca accgagcgaa 1440cctgcacatc tgcctcagcc ggcatggttc
gccgatttcg cagccgacag agaatcagca 1500caaccggagt caatgcttaa
cctttacaga agagcgcttg ctctgagaca tgaacttatg 1560cctgccgata
cgacactgac atggcttgac gaagatagac cttcagacgc accggacgga
1620gcagacggac agcatggagg cgttattgca tatagaagat caaacggctg
ggcaagcgtt 1680acaaatttcg gagctgaacc tgtcgcgctt cctgctggcg
aggttcttct tacgagcgga 1740gaactgtgta gcgatggcag acttccgcag
gacacaacag tgtggcttag actgaatcag 1800gat
180334662PRTBifidobacterium breve 34Met Tyr Phe His Ile Asn His Leu
His Asp Thr Val Val Ile Asn Val 1 5 10 15 Ile Ser Lys His Gly Phe
Thr Val Ala Val Arg Val Leu Leu Asn Pro 20 25 30 Ile Thr Thr Asn
Pro Gln Gln Ser Gly Ala Thr His His Val Ser His 35 40 45 Thr Ile
Thr His Ala Gln Lys Gly Ile Gly Met Thr Ala Asn Asn Leu 50 55 60
Asn Asp Asp Trp Trp Lys Gln Ala Val Val Tyr Gln Ile Tyr Pro Arg 65
70 75 80 Ser Phe Lys Asp Val Asn Gly Asp Gly Ile Gly Asp Ile Ala
Gly Val 85 90 95 Thr Glu Lys Met Asp Tyr Leu Lys Asn Leu Gly Val
Asp Ala Ile Trp 100 105 110 Leu Ser Pro Phe Tyr Pro Ser Asp Leu Ala
Asp Gly Gly Tyr Asp Val 115 120 125 Ile Asp Tyr Arg Asn Val Asp Pro
Arg Leu Gly Thr Met Asp Asp Phe 130 135 140 Asp Ala Met Ala Lys Ala
Ala His Glu Ala Gly Ile Lys Val Ile Val 145 150 155 160 Asp Ile Val
Pro Asn His Thr Ala Asp Lys His Val Phe Phe Lys Glu 165 170 175 Ala
Leu Ala Ala Glu Pro Gly Ser Pro Ala Arg Asp Arg Tyr Ile Phe 180 185
190 Arg Asp Gly Arg Gly Glu His Gly Glu Leu Pro Pro Asn Asp Trp Gln
195 200 205 Ser Phe Phe Gly Gly Pro Ala Trp Ala Arg Val Ala Asp Gly
Gln Trp 210 215 220 Tyr Leu His Leu Phe Asp Lys Ala Gln Pro Asp Val
Asn Trp Lys Asn 225 230 235 240 Pro Asp Ile His Glu Glu Phe Lys Lys
Thr Leu Arg Phe Trp Ser Asp 245 250 255 His Gly Thr Asp Gly Phe Arg
Ile Asp Val Ala His Gly Leu Ala Lys 260 265 270 Asp Leu Glu Ser Lys
Pro Leu Glu Glu Leu Gly Arg Glu Tyr Ser Val 275 280 285 Val Gly Val
Leu Asn His Asp Phe Ser His Pro Leu Phe Asp Arg Arg 290 295 300 Glu
Val His Asp Ile Tyr Arg Glu Trp Arg Lys Val Phe Asn Glu Tyr 305 310
315 320 Asp Pro Pro Arg Phe Ala Val Ala Glu Ala Trp Val Val Pro Glu
His 325 330 335 Gln His Leu Tyr Ala Ser Met Asp Glu Leu Gly Gln Ser
Phe Asn Phe 340 345 350 Asp Phe Ala Gln Ala Ser Trp Tyr Ala Asp Glu
Phe Arg Ala Ala Ile 355 360 365 Ala Ala Gly Leu Lys Ala Ala Ala Glu
Thr Gly Gly Ser Thr Thr Thr 370 375 380 Trp Val Met Asn Asn His Asp
Val Pro Arg Ser Pro Ser Arg Tyr Gly 385 390 395 400 Leu Pro Gln Val
Lys Gly Ala Pro Tyr His Gln Leu Pro His Asp Trp 405 410 415 Leu Leu
Arg Asn Gly Thr Thr Tyr Pro Glu Asp Arg Glu Leu Gly Thr 420 425 430
Arg Arg Ala Arg Ala Ala Ala Leu Met Glu Leu Gly Leu Pro Gly Ala 435
440 445 Ala Tyr Ile Tyr Gln Gly Glu Glu Leu Gly Leu Phe Glu Val Ala
Asp 450 455 460 Ile Pro Trp Asp Arg Leu Glu Asp Pro Thr Ala Phe His
Thr Ala Gln 465 470 475 480 Ala Thr Met Asp Lys Gly Arg Asp Gly Cys
Arg Val Pro Ile Pro Trp 485 490 495 Thr Ala Ala Asn Glu Pro Thr Leu
Ala Asp Phe Ser Arg Pro Ile Pro 500 505 510 Ala Asp Asp Gly Thr Gly
Glu Asn His Val Pro Leu Cys Ala Ala Gly 515 520 525 Gln Phe Gly Thr
Gly Ala Ser Phe Gly Phe Ser Pro Ala Thr Arg Ala 530 535 540 Glu Gly
Val Thr Pro Ala Ala Asp Pro His Leu Pro Gln Pro Leu Trp 545 550 555
560 Phe Lys Asp Tyr Ala Val Asp Val Glu Gln Ala Asp Pro Asp Ser Met
565 570 575 Leu Ala Leu Tyr His Ala Ala Leu Ala Ile Arg Gln Glu Ser
Leu Thr 580 585 590 Ala Thr Arg Asp Thr Thr Ala Glu Gln Val Asp Met
Gly Pro Asp Val 595 600 605 Val Ala Tyr Thr Arg Ala Ala Val Gly Gly
Arg Thr Phe Thr Ser Ile 610 615 620 Thr Asn Phe Gly Thr Glu Pro Val
Glu Leu Pro Gly Gly Ser Val Val 625 630 635 640 Leu Thr Ser Gly Pro
Leu Thr Pro Asp Gly Gln Leu Pro Thr Asp Thr 645 650 655 Ser Ala Trp
Val Ile Lys 660 351812DNAArtificial sequenceBbrGlu2_codon-optimized
35gtgacagcaa ataaccttaa tgacgactgg tggaaacaag cagtggttta ccaaatctat
60cctagatcat tcaaggatgt taatggcgat ggaattggcg atattgcagg cgttacggaa
120aaaatggatt acctgaaaaa tctgggagtt gacgctatct ggcttagccc
tttttacccg 180agcgatctgg ccgacggagg ctatgatgtg attgactata
gaaatgttga tccgagactg 240ggaacgatgg atgatttcga tgcgatggct
aaggcggcac atgaagcagg cattaaagtt 300attgttgata ttgtcccgaa
tcatacagct gacaaacatg tctttttcaa agaagcactt 360gcagcagaac
cgggctcacc tgccagagac agatacatct ttagagatgg aagaggagaa
420cacggcgaac ttccgcctaa tgactggcaa tcattctttg gcggaccggc
atgggctaga 480gtcgcagatg gccaatggta ccttcatctt ttcgacaagg
cgcaacctga tgtcaattgg 540aaaaaccctg acattcacga agaattcaag
aaaacgctga gattttggtc agatcatggc 600acggatggct tcagaatcga
tgtggcacac ggacttgcaa aagatctgga aagcaaaccg 660ctggaggaac
ttggcagaga atatagcgtg gttggcgttc tgaaccatga cttttcacat
720ccgctgttcg atagaagaga agttcatgat atctacagag agtggagaaa
agtttttaac 780gaatatgacc cgccgagatt tgccgttgca gaagcatggg
tggtgcctga acaccaacac 840ctgtatgcat caatggacga gctgggacaa
tcattcaact ttgattttgc acaggcatca 900tggtatgccg atgagtttag
agctgccatt gccgcaggac ttaaggccgc agcggaaaca 960ggaggctcaa
cgacaacgtg ggtgatgaat aatcacgacg ttcctagaag cccgtcaaga
1020tatggcctgc cgcaagttaa aggagcacct taccaccagc ttccgcacga
ttggcttctg 1080agaaatggaa caacatatcc ggaagataga gagcttggca
cgagaagagc aagagcagcg 1140gcactgatgg aactgggcct tcctggcgca
gcatacattt atcagggcga agaactggga 1200ctttttgaag tggcggatat
tccgtgggat agacttgagg acccgacagc attccacaca 1260gcacaagcga
caatggataa aggaagagac ggatgcagag tgcctattcc ttggacagct
1320gcaaatgaac ctacactggc agacttcagc agaccgattc cggcagacga
cggaacgggc 1380gaaaaccatg tcccgctgtg cgctgcagga caattcggca
caggagcgtc attcggcttt 1440agcccggcta caagagccga aggagttaca
ccggctgcag atccgcatct gcctcaacct 1500ctttggttta aagattatgc
agttgatgtc gagcaggccg acccggattc aatgctggca 1560ctgtatcatg
cagcactggc gattagacaa gaatcactta cagcaacaag agacacgacg
1620gcggaacaag tggatatggg ccctgacgtt gttgcatata cgagagcggc
cgtgggcggc 1680agaacattta catcaattac aaattttgga acggagcctg
ttgaactgcc gggaggatca 1740gttgttctga caagcggacc tctgacaccg
gacggccaac tgcctacgga cacatcagct 1800tgggtcatca aa
181236604PRTArtificial sequenceBbrGlu2 protein_encoded by optimized
sequence 36Met Thr Ala Asn Asn Leu Asn Asp Asp Trp Trp Lys Gln Ala
Val Val 1 5 10 15 Tyr Gln Ile Tyr Pro Arg Ser Phe Lys Asp Val Asn
Gly Asp Gly Ile 20 25 30 Gly Asp Ile Ala Gly Val Thr Glu Lys Met
Asp Tyr Leu Lys Asn Leu 35 40 45 Gly Val Asp Ala Ile Trp Leu Ser
Pro Phe Tyr Pro Ser Asp Leu Ala 50 55 60 Asp Gly Gly Tyr Asp Val
Ile Asp Tyr Arg Asn Val Asp Pro Arg Leu 65 70 75 80 Gly Thr Met Asp
Asp Phe Asp Ala Met Ala Lys Ala Ala His Glu Ala 85 90 95 Gly Ile
Lys Val Ile Val Asp Ile Val Pro Asn His Thr Ala Asp Lys 100 105 110
His Val Phe Phe Lys Glu Ala Leu Ala Ala Glu Pro Gly Ser Pro Ala 115
120 125 Arg Asp Arg Tyr Ile Phe Arg Asp Gly Arg Gly Glu His Gly Glu
Leu 130 135 140 Pro Pro Asn Asp Trp Gln Ser Phe Phe Gly Gly Pro Ala
Trp Ala Arg 145 150 155 160 Val Ala Asp Gly Gln Trp Tyr Leu His Leu
Phe Asp Lys Ala Gln Pro 165 170 175 Asp Val Asn Trp Lys Asn Pro Asp
Ile His Glu Glu Phe Lys Lys Thr 180 185 190 Leu Arg Phe Trp Ser Asp
His Gly Thr Asp Gly Phe Arg Ile Asp Val 195 200 205 Ala His Gly Leu
Ala Lys Asp Leu Glu Ser Lys Pro Leu Glu Glu Leu 210 215 220 Gly Arg
Glu Tyr Ser Val Val Gly Val Leu Asn His Asp Phe Ser His 225 230 235
240 Pro Leu Phe Asp Arg Arg Glu Val His Asp Ile Tyr Arg Glu Trp Arg
245 250 255 Lys Val Phe Asn Glu Tyr Asp Pro Pro Arg Phe Ala Val Ala
Glu Ala 260 265 270 Trp Val Val Pro Glu His Gln His Leu Tyr Ala Ser
Met Asp Glu Leu 275 280 285 Gly Gln Ser Phe Asn Phe Asp Phe Ala Gln
Ala Ser Trp Tyr Ala Asp 290 295 300 Glu Phe Arg Ala Ala Ile Ala Ala
Gly Leu Lys Ala Ala Ala Glu Thr 305 310 315 320 Gly Gly Ser Thr Thr
Thr Trp Val Met Asn Asn His Asp Val Pro Arg 325 330 335 Ser Pro Ser
Arg Tyr Gly Leu Pro Gln Val Lys Gly Ala Pro Tyr His 340 345 350 Gln
Leu Pro His Asp Trp Leu Leu Arg Asn Gly Thr Thr Tyr Pro Glu 355 360
365 Asp Arg Glu Leu Gly Thr Arg Arg Ala Arg Ala Ala Ala Leu Met Glu
370 375 380 Leu Gly Leu Pro Gly Ala Ala Tyr Ile Tyr Gln Gly Glu Glu
Leu Gly 385 390 395 400 Leu Phe Glu Val Ala Asp Ile Pro Trp Asp Arg
Leu Glu Asp Pro Thr 405 410 415 Ala Phe His Thr Ala Gln Ala Thr Met
Asp Lys Gly Arg Asp Gly Cys 420 425 430 Arg Val Pro Ile Pro Trp Thr
Ala Ala Asn Glu Pro Thr Leu Ala Asp 435 440 445 Phe Ser Arg Pro Ile
Pro Ala Asp Asp Gly Thr Gly Glu Asn His Val 450 455 460 Pro Leu Cys
Ala Ala Gly Gln Phe Gly Thr Gly Ala Ser Phe Gly Phe 465 470 475 480
Ser Pro Ala Thr Arg Ala Glu Gly Val Thr Pro Ala Ala Asp Pro His 485
490 495 Leu Pro Gln Pro Leu Trp Phe Lys Asp Tyr Ala Val Asp Val Glu
Gln 500 505 510 Ala Asp Pro Asp Ser Met Leu Ala Leu Tyr His Ala Ala
Leu Ala Ile 515 520 525 Arg Gln Glu Ser Leu Thr Ala Thr Arg Asp Thr
Thr Ala Glu Gln Val 530 535 540 Asp Met Gly Pro Asp Val Val Ala Tyr
Thr Arg Ala Ala Val Gly Gly 545 550 555 560 Arg Thr Phe Thr Ser Ile
Thr Asn Phe Gly Thr Glu Pro Val Glu Leu 565 570 575 Pro Gly Gly Ser
Val Val Leu Thr Ser Gly Pro Leu Thr Pro Asp Gly 580 585 590 Gln Leu
Pro Thr Asp Thr Ser Ala Trp Val Ile Lys 595 600
371821DNABifidobacterium breve 37atgactactt tcaaccgcgc aataattcct
gacgccattc gcaccaacgg agccacgccc 60aacccgtggt ggtcgaatgc ggtggtgtac
cagatctacc cgcggtcgtt ccaggacacg 120aacggcgatg gtctcggcga
cctgaagggc atcacctccc gcctcgacta tcttgccgat 180ctcggcgtgg
atgtgctctg gctctccccg gtctacaggt ccccgcaaga cgacaacggc
240tacgacatct ccgactaccg ggacatcgac ccgctgttcg gcacgcttga
cgacatggac 300gagctgctgg ccgaagcgca caagcgcggc ctcaagatcg
tgatggacct ggtggtcaac 360cacacctccg acgagcacgc gtggttcgag
gcgtcgaagg acaaggacga cccgcacgcc 420gactggtact ggtggcgtcc
cgcccgcccc ggccacgagc cgggcacgcc cggcgccgag 480ccgaaccagt
ggggctccta cttcggcggc tccgcatggg agtacagccc ggagcgcggc
540gagtactacc tgcaccagtt ctcgaagaag cagcctgatc tcaactggga
gaacccggcc 600gtgcgccgtg cagtgtacga catgatgaat tggtggctcg
atcgcggcat cgacggcttc 660cgtatggacg tcatcaccct tatctccaag
cgtacggatg caaacggcag gctccccggc 720gagtacggtt ccgagctcca
tgacctgccg gtgggggagg agggctactc cagcccgaat 780ccgttctgtg
ccgacggtcc gcgtcaggac gagttcctcg ccgagatgcg ccgcgaggtg
840ttcgacgggc gtgacggctt cctcaccgtc ggcgaggccc ccgggatcac
cgccgaacgc 900aacgagcaca tcaccaatcc ggccaatggg gagctggata
tgctgttcct gttcgaacat 960gtcgattttg attgtgatgg cgtcaagtgg
aagcctctgc cgctcgattt gccgggattc 1020aagcggatca tggccggata
tcagactgct gtggagaacg tgggctgggc aagcttgttc 1080actggtaacc
acgatcagcc acgtgtggtc tctcgttggg gcgatgactc ctcggaggaa
1140tcccgcgtgc gctcggccaa agcgcttggc ctgatgttgc acatgcatcg
cggcaccccg 1200tacgtatatc agggtgagga gctgggcatg accaatgctc
acttcaccag cctcgatcag 1260taccgcgacc ttgaatctct caatgcctat
cgtcagaggg tcgaggaagc caaggtacaa 1320tcgccggaat cgatgatggc
gggtatcgcc gcgcgcggtc gcgacaattc gcgtacccca 1380atgcaatggg
atggttctgc ctatgccggt ttcaccgcac cggatgcagc gacggagccg
1440tggatttccg tcaacccgaa tcatgctgaa atcaatgcgg ccggcgaatt
cgacgatcct 1500gactcggtgt atgccttcta caagaagctc atcgccttgc
gccacaacag ttcgattgtg 1560gcggctggcg agtggcggct gattgatgcg
gatgacgcgc atgtatatgc gttcacccgc 1620acgcttggca acgagcgatt
gctggttgtg gttaacctgt ccggccgaac cgtcgacttg 1680ccgcgtgaat
ccaccgagct gattgccggc ggcgtcactg agccagatat cattctctcc
1740acgtacgacg cccctcacac tgtggtctcc ctcgccaacc gtgagcttga
cccgtgggag 1800gctgctgccg tccagctgta a 182138419DNABifidobacterium
brevemisc_feature(4)..(4)n is a, c, g, or tmisc_feature(11)..(11)n
is a, c, g, or tmisc_feature(15)..(15)n is a, c, g, or
tmisc_feature(19)..(19)n is a, c, g, or tmisc_feature(29)..(29)n is
a, c, g, or tmisc_feature(56)..(56)n is a, c, g, or
tmisc_feature(84)..(84)n is a, c, g, or tmisc_feature(115)..(115)n
is a, c, g, or tmisc_feature(136)..(136)n is a, c, g, or
tmisc_feature(138)..(138)n is a, c, g, or
tmisc_feature(149)..(149)n is a, c, g, or
tmisc_feature(168)..(168)n is a, c, g, or
tmisc_feature(183)..(183)n is a, c, g, or
tmisc_feature(208)..(208)n is a, c, g, or
tmisc_feature(211)..(211)n is a, c, g, or
tmisc_feature(213)..(213)n is a, c, g, or
tmisc_feature(239)..(239)n is a, c, g, or
tmisc_feature(247)..(247)n is a, c, g, or
tmisc_feature(284)..(284)n is a, c, g, or
tmisc_feature(294)..(294)n is a, c, g, or
tmisc_feature(315)..(315)n is a, c, g, or
tmisc_feature(337)..(338)n is a, c, g, or
tmisc_feature(341)..(341)n is a, c, g, or
tmisc_feature(358)..(358)n is a, c, g, or
tmisc_feature(380)..(380)n is a, c, g, or
tmisc_feature(385)..(385)n is a, c, g, or
tmisc_feature(412)..(412)n is a, c, g, or t 38mttnradart ngatnwwsna
vvyyrsdtng dggdkgtsrd yadgvdvwsv yrsddngyds 60dyrddgtddm daahkrgkvm
dvvnhtsdha waskdkddha dwywwrargh gtganwgsyg 120gsawysrgyy
hskkdnwnav rravydmmnw wdrgdgrmdv tskrtdangr gygshdvggy
180ssncadgrda mrrvdgrdgt vgagtarnht nangdmhvdd cdgvkwkdgk
rmagytavnv 240gwastgnhdr vvsrwgddss srvrsakagm hmhrgtyvyg
gmtnahtsdy rdsnayrrva 300kvssmmagaa rgrdnsrtmw dgsayagtad
aatwsvnnha naagdddsvy aykkarhnss 360vaagwrdadd ahvyatrtgn
rvvvnsgrtv drstaggvtd stydahtvvs anrdwaaav 419391818DNAArtificial
sequenceBbrGlu5_codon-optimized 39gtgacaacat tcaatagagc aattattccg
gatgcgatta gaacaaatgg agccacaccg 60aatccgtggt ggtcaaacgc agtggtctat
caaatctatc cgagatcatt tcaagacaca 120aacggagacg gccttggcga
tcttaaggga atcacatcaa gactggatta tctggctgac 180cttggagttg
atgttctgtg gctgagcccg gtttatagat cacctcaaga cgacaatggc
240tatgacatca gcgactatag agacattgat cctctgtttg gcacactgga
tgatatggac 300gagctgcttg cagaagcaca taaaagagga cttaaaatcg
ttatggacct ggttgtgaac 360catacatcag atgaacacgc atggtttgaa
gcatcaaaag ataaagacga tccgcacgct 420gactggtatt ggtggagacc
tgctagaccg ggccatgaac cgggaacacc tggcgcagag 480ccgaaccaat
ggggctcata ttttggcgga tcagcatggg agtatagccc ggaaagaggc
540gaatactatc ttcatcagtt ctcaaaaaaa caaccggatc tgaattggga
aaatccggcg 600gtcagaagag cggtgtacga tatgatgaac tggtggctgg
atagaggaat tgatggattt 660agaatggatg ttattacact gatttcaaaa
agaacagacg ccaatggaag acttccggga 720gaatatggat cagaactgca
cgaccttcct gtgggcgaag agggctattc atcacctaat 780ccgttttgcg
ccgacggccc gagacaagat gaattccttg ccgaaatgag aagagaagtt
840tttgacggaa gagatggctt tctgacagtc ggcgaagcac ctggaattac
agcagaaaga 900aacgaacaca ttacaaaccc tgcaaacggc gaacttgata
tgctgttcct gtttgaacat 960gtggactttg attgcgatgg cgttaaatgg
aaaccgcttc cgctggatct tcctggcttt 1020aaaagaatta tggcaggcta
tcagacagca gttgaaaatg tcggatgggc atcactgttt 1080acaggcaatc
atgaccaacc gagagttgtc agcagatggg gcgatgactc atcagaggag
1140agcagagtta gaagcgccaa agcactgggc cttatgctgc acatgcacag
aggcacaccg 1200tatgtttatc aaggcgagga acttggaatg acaaatgctc
attttacgtc acttgaccag 1260tacagagatc ttgagtcact taatgcttat
agacaaagag ttgaagaagc caaggttcag 1320tcacctgaaa gcatgatggc
cggcattgca gctagaggca gagataattc aagaacgccg 1380atgcaatggg
atggaagcgc atacgcaggc tttacggcac ctgacgcagc tacggaaccg
1440tggatttcag ttaatccgaa tcatgcagaa attaacgcag caggagaatt
tgatgacccg 1500gattcagtct atgcattcta caaaaaactg attgcactga
gacataatag cagcattgtt 1560gcagcgggcg aatggagact tatcgatgca
gacgatgcac acgtttatgc gtttacaaga 1620acacttggca acgagagact
gcttgtcgtg gttaatctga gcggcagaac agttgatctg 1680ccgagagagt
caacagagct tattgctggc ggcgtgacag aaccggacat tattctttca
1740acatatgacg cccctcatac agtggtttca ctggcaaata gagagctgga
cccgtgggaa 1800gctgcggcag tgcagctg 1818401570PRTStreptococcus sp
C150 40Met Lys Lys Asn Trp Val Thr Ile Gly Val Thr Ala Leu Ser Met
Val 1 5 10 15 Thr Val Ala Gly Gly Thr Leu Leu Glu Asp Gln Gln Val
Gln Ala Asp 20 25 30 Glu Gln Asn Ala Ala Asn Gln Ser Gly Asp Ser
Ser Gln Asp Leu Leu 35 40 45 Arg Glu Ala Ser Ala Thr Thr Asn Asp
Thr Ala Thr Thr Val Ala Pro 50 55 60 Thr Ile Ser Ala Asp Ala Asn
Thr Ala Ser Val Asn Ile Pro Val Ala 65 70 75 80 Asp Ala Thr Asn Thr
Thr Thr Ala Ala Thr Asp Arg Ala Ala Ala Pro 85 90 95 Thr Thr Thr
Ala Ala Thr Val Asp Thr Asn Ser Gly Gln Ala Ala Pro 100 105 110 Ser
Thr Asn Val Gln Ala Ala Ala Ala Asp Thr Ser Ala Thr Pro Thr 115 120
125 Asp Thr Asn Thr Asn Thr Asn Ala Ser Val Thr Ala Thr Asp Arg Ala
130 135 140 Val Ala Thr Asp Thr Ala Asn Thr Glu Ala Arg Thr Pro Ser
Arg Arg 145 150 155 160 Ala Leu Ala Glu Thr Arg Glu Ala Asn Thr Asn
Thr Ser Thr Gly Ile 165 170 175 Gln Trp Ile Asn Gly Lys Gln Tyr Tyr
Val Asn Ser Asp Gly Ser Val 180 185 190 Arg Lys Asn Phe Val Phe Glu
Gln Asp Gly Lys Ser Tyr Tyr Phe Asp 195 200 205 Ala Glu Thr Gly Ala
Leu Ala Thr Lys Ser Gln Asp Glu Phe Ser Thr 210 215 220 Glu Pro Ile
Lys Ala Ala Val Asp Phe Ser Ser Gly Asn Gln Leu Tyr 225 230 235 240
Lys Asn Asp Asn Lys Ser Leu Asp Gln Leu Asp Thr Phe Ile Thr Ala 245
250 255 Asp Ala Trp Tyr Arg Pro Lys Ser Ile Leu Lys Asp Gly Lys Thr
Trp 260 265 270 Thr Ala Ser Thr Glu Ala Asp Lys Arg Pro Leu Leu Met
Val Trp Trp 275 280 285 Pro Asp Lys Ser Thr Gln Val Asn Tyr Leu Asn
Tyr Met Gln Asn Gln 290 295 300 Gly Leu Gly Ala Gly Ser Phe Ser Thr
Asn Ser Ser Gln Glu Ser Leu 305 310 315 320 Asn Leu Ala Ala Lys Ala
Val Gln Thr Lys Ile Glu Glu Arg Ile Ala 325 330 335 Arg Glu Gly Asn
Thr Asn Trp Leu Arg Thr Ser Ile Asp Gln Phe Ile 340 345 350 Lys Thr
Gln Pro Gly Trp Asn Ser Ser Thr Glu Asn Ser Ser Tyr Asp 355 360 365
His Leu Gln Gly Gly Gln Leu Leu Phe Asn Asn Ser Lys Gly Asp Thr 370
375 380 Gly Asn Arg Thr Ser Tyr Ala Asn Ser Asp Tyr Arg Leu Leu Asn
Arg 385 390 395 400 Thr Pro Thr Asn Gln Ser Gly Thr Arg Lys Tyr Phe
Lys Asp Asn Ser 405 410 415 Ile Gly Gly Leu Glu Phe Leu Leu Ala Asn
Asp Ile Asp Asn Ser Asn 420 425 430 Pro Ala Val Gln Ala Glu Gln Leu
Asn Trp Leu His Phe Met Met Asn 435 440 445 Ile Gly Ser Ile Met Ala
Asn Asp Pro Thr Ala Asn Phe Asp Gly Leu 450 455 460 Arg Val Asp Ala
Leu Asp Asn Val Asp Ala Asp Leu Leu Gln Ile Ala 465 470 475 480 Ser
Asp Tyr Phe Lys Ala Val Tyr Gly Val Asp Lys Ser Glu Ala Asn 485 490
495 Ala Ile Lys His Leu Ser Tyr Leu Glu Ala Trp Ser Ala Asn Asp Pro
500 505 510 Tyr Tyr Asn Lys Asp Thr Lys Gly Ala Gln Leu Pro Ile Asp
Asn Ala 515 520 525 Leu Arg Asn Ala Leu Thr Asn Leu Leu Met Arg Asp
Lys Asn Thr Arg 530 535 540 Met Gln Leu Gly Asp Met Thr Ala Phe Met
Asn Ser Ser Leu Asn Pro 545 550 555 560 Arg Gly Ala Asn Asp Lys Asn
Gly Glu Arg Met Ala Asn Tyr Ile Phe 565 570 575 Thr Arg Ala His Asp
Thr Glu Ala Gln Thr Ile Ile Gln Arg Ile Ile 580 585 590 Arg Asp Arg
Ile Asn Pro Asn Leu Phe Gly Tyr Asn Phe Thr Arg Asp 595 600 605 Glu
Ile Lys Lys Ala Phe Glu Ile Tyr Asn Ala Asp Ile Asn Thr Ala 610 615
620 His Lys Thr Tyr Ala Ser Tyr Asn Leu Pro Ser Val Tyr Ala Leu Met
625 630 635 640 Leu Thr Asn Lys Asp Ser Val Thr Arg Val Tyr Tyr Gly
Asp Leu Tyr 645 650 655 Arg Glu Asp Gly His Tyr Met Ala Lys Lys Thr
Pro Tyr Phe Asp Ala 660 665 670 Ile Asp Thr Leu Leu Arg Ala Arg Ile
Lys Tyr Val Ala Gly Gly Gln 675 680 685 Asp Met Glu Val Lys Lys Val
Gly Asn Asp Gly Leu Leu Thr Ser Val 690 695 700 Arg Tyr Gly Lys Gly
Ala Asn Asn Ser Thr Asp Trp Gly Thr Thr Glu 705 710 715 720 Thr Arg
Thr Gln Gly Met Gly Val Ile Leu Thr Asn Asn Tyr Asp Phe 725 730 735
Arg Leu Gly Ser Asn Glu Thr Val Thr Met Asn Met Gly Arg Ala His 740
745 750 Arg Asn Gln Leu Tyr Arg Pro Leu Leu Leu Thr Thr Lys Asp Gly
Leu 755 760 765 Ala Thr Tyr Leu Asn Asp Ser Asp Val Pro Ser Asn Leu
Leu Lys Arg 770 775 780 Thr Asp Trp Asn Gly Asn Leu Thr Phe Asn Ala
Asn Asp Val Phe Gly 785 790 795 800 Val Glu Asn Val Gln Val Ser Gly
Tyr Leu Gly Val Trp Val Pro Val 805 810
815 Gly Ala Lys Ala Asn Gln Asp Ala Arg Thr Gln Pro Ser Asn Arg Ala
820 825 830 Asn Ser Asp Gly Gln Val Tyr Lys Ser Ser Ala Ala Leu Asp
Ser Gln 835 840 845 Val Met Tyr Glu Ala Phe Ser Asn Phe Gln Ala Phe
Ala Asp Asp Gln 850 855 860 Pro Glu Leu Tyr Met Asn Arg Val Leu Ala
Lys Asn Thr Asp Leu Leu 865 870 875 880 Lys Ala Trp Gly Val Thr Ser
Val Gly Leu Pro Pro Gln Tyr Val Ser 885 890 895 Ser Lys Asp Gly Thr
Phe Leu Asp Ser Thr Ile Asp Asn Gly Tyr Ala 900 905 910 Phe Asp Asp
Arg Tyr Asp Met Ala Leu Ser Gln Asn Asn Lys Tyr Gly 915 920 925 Ser
Leu Glu Asp Leu Leu Asn Val Leu Arg Ala Leu His Lys Asp Gly 930 935
940 Ile Gln Ala Ile Ala Asp Trp Val Pro Asp Gln Ile Tyr Asn Leu Pro
945 950 955 960 Gly Lys Glu Val Val Asn Ala Thr Arg Val Asn Gly Tyr
Gly Tyr His 965 970 975 Gln Gln Gly Tyr Gln Ile Val Asp Gln Ala Tyr
Val Ala Asn Thr Arg 980 985 990 Thr Asp Gly Thr Asp Tyr Gln Gly Arg
Tyr Gly Gly Ala Phe Leu Asp 995 1000 1005 Glu Leu Lys Ala Lys Tyr
Pro Ser Ile Phe Asn Arg Val Gln Ile 1010 1015 1020 Ser Asn Gly Lys
Gln Leu Pro Thr Asn Glu Lys Ile Thr Lys Trp 1025 1030 1035 Ser Ala
Lys Tyr Phe Asn Gly Thr Asn Ile Leu Gly Arg Gly Ile 1040 1045 1050
Asn Tyr Val Leu Arg Asp Asp Lys Thr Asn Gln Tyr Phe Asn Thr 1055
1060 1065 Ser Ala Asn Gly Gln Leu Leu Pro Thr Pro Leu Arg Asp Thr
Gly 1070 1075 1080 Ala Ile Thr Ser Thr Gln Val Phe Gln Arg Arg Gly
Gln Asp Val 1085 1090 1095 Tyr Phe Leu Arg Asp Asn Gln Val Ile Lys
Asn Glu Phe Val Gln 1100 1105 1110 Asp Gly Asn Gly Asn Trp Tyr Tyr
Phe Gly Ala Asp Gly Lys Met 1115 1120 1125 Thr Lys Gly Ala Gln Asn
Ile Asn Ser Lys Asp Tyr Tyr Phe Phe 1130 1135 1140 Asp Asn Gly Val
Gln Leu Arg Asn Ala Leu Arg Arg Ala Ser Asn 1145 1150 1155 Gly Tyr
Thr Tyr Tyr Tyr Gly Leu Asp Gly Ala Met Ile Lys Asn 1160 1165 1170
Ala Phe Val Asp Phe Asp Asp Lys His Gln Gln Val Arg Ala Phe 1175
1180 1185 Thr Thr Gln Gly Thr Met Val Val Gly Asn Leu His Trp Ser
Gly 1190 1195 1200 His His Phe Tyr Phe Asp Arg Glu Thr Gly Ile Gln
Ala Lys Asp 1205 1210 1215 Arg Ile Val Arg Thr Asp Asp Gly Lys Leu
His Tyr Tyr Val Ala 1220 1225 1230 Gln Thr Gly Asp Met Gly Arg Asn
Val Phe Ala Thr Asp Ser Arg 1235 1240 1245 Thr Gly Lys Arg Tyr Tyr
Phe Asp Ala Asp Gly Asn Thr Val Thr 1250 1255 1260 Gly Ser Arg Val
Ile Asp Gly Lys Thr Tyr Tyr Phe Asn Gln Asp 1265 1270 1275 Gly Ser
Val Gly Thr Ala Tyr Ser Asn Arg Ala Asp Ser Ile Ile 1280 1285 1290
Phe Glu Asn Gly Lys Ala Arg Tyr Ile Thr Pro Ala Gly Glu Ile 1295
1300 1305 Gly Arg Ser Ile Phe Val Tyr Asn Pro Ala Thr Lys Ala Trp
Asn 1310 1315 1320 Tyr Phe Asp Lys Glu Gly Asn Arg Val Thr Gly Arg
Gln Tyr Ile 1325 1330 1335 Asp Gly Asn Leu Tyr Tyr Phe Lys Glu Asp
Gly Ser Gln Val Lys 1340 1345 1350 Gly Ala Ile Val Glu Glu Asn Gly
Ile Lys Tyr Tyr Tyr Glu Pro 1355 1360 1365 Gly Ser Gly Ile Leu Ala
Ser Gly Arg Tyr Leu Gln Val Gly Asp 1370 1375 1380 Asp Gln Trp Ile
Tyr Phe Lys His Asp Gly Ser Leu Ala Ile Gly 1385 1390 1395 Gln Val
Arg Ala Asp Gly Gly Tyr Leu Lys Tyr Phe Asp Lys Asn 1400 1405 1410
Gly Ile Gln Val Lys Gly Gln Thr Ile Val Glu Asp Gly His Thr 1415
1420 1425 Tyr Tyr Tyr Asp Ala Asp Ser Gly Ala Leu Val Thr Ser Ser
Phe 1430 1435 1440 Ala Glu Ile Ala Pro Asn Gln Trp Ala Tyr Phe Asn
Thr Glu Gly 1445 1450 1455 Gln Ala Leu Lys Gly Lys Trp Thr Ile Asn
Gly Lys Glu Tyr Tyr 1460 1465 1470 Phe Asp Gln Asn Gly Ile Gln Tyr
Lys Gly Lys Ala Val Lys Val 1475 1480 1485 Gly Ser Arg Tyr Lys Tyr
Tyr Asp Glu Asn Asp Gly Gln Pro Val 1490 1495 1500 Thr Asn Arg Phe
Ala Gln Ile Glu Pro Asn Val Trp Ala Tyr Phe 1505 1510 1515 Gly Ala
Asp Gly Tyr Ala Val Thr Gly Glu Gln Val Ile Asn Gly 1520 1525 1530
Gln His Leu Tyr Phe Asp Gln Ser Gly Arg Gln Val Lys Gly Ala 1535
1540 1545 Tyr Val Thr Val Asn Gly Gln Arg Arg Tyr Tyr Asp Ala Asn
Thr 1550 1555 1560 Gly Glu Tyr Ile Pro Gly Arg 1565 1570
414179DNAStreptococcus sp C150 41atcaatggca aacagtacta tgtaaattcg
gacggtagcg tgcgtaagaa tttcgttttt 60gaacaggatg gtaagagcta ctactttgac
gcggaaactg gcgcgctggc cactaaaagc 120caagatgaat ttagcacgga
gccgattaaa gcagcagtgg acttctctag cggcaaccag 180ctgtacaaaa
atgacaacaa atcgctggat cagctggata cgtttatcac cgctgacgca
240tggtaccgcc ctaagtctat tctgaaggat ggcaaaacct ggaccgcgtc
taccgaagct 300gataagcgtc cgttgctgat ggtgtggtgg ccggacaagt
ccacccaagt taactacctg 360aactacatgc agaaccaggg tttgggtgcg
ggtagcttca gcaccaatag cagccaagaa 420tccctgaatc tggctgcgaa
agcagttcag accaagatcg aagaacgcat cgcacgtgag 480ggtaacacca
attggctgcg taccagcatt gaccaattca ttaagacgca gccaggctgg
540aacagcagca ctgagaatag cagctatgat cacttgcagg gtggtcaact
gctgttcaat 600aacagcaaag gtgatacggg taaccgcacc agctatgcga
atagcgacta tcgtctgctg 660aaccgtaccc caactaatca aagcggcacc
cgtaagtact ttaaggataa ttccatcggt 720ggtctggaat ttctgctggc
aaacgacatc gacaacagca accctgccgt tcaggcggag 780cagctgaact
ggctgcactt catgatgaac attggttcta tcatggcgaa tgacccgacg
840gcgaactttg atggtttgcg tgtggacgcg ttggataacg tggatgcgga
cctgttgcag 900atcgcgagcg attacttcaa ggcagtctac ggtgttgata
aatccgaggc gaatgcgatc 960aagcacctga gctatctgga ggcgtggagc
gccaatgacc cgtattacaa caaggatacc 1020aaaggcgcgc aactgccgat
tgacaacgcg ctgcgcaacg cactgaccaa cctgttgatg 1080cgtgacaaga
atacgcgcat gcagctgggt gacatgacgg cgtttatgaa tagctctctg
1140aacccacgtg gtgcgaatga caaaaacggc gagcgtatgg cgaattacat
tttcacccgc 1200gcacacgata ccgaggcgca gaccatcatt cagcgtatta
tccgcgatcg tatcaatccg 1260aacctgtttg gctacaattt cacccgcgat
gaaatcaaaa aggcgtttga gatctacaac 1320gcggacatta acacggcgca
taagacgtac gcgagctaca atctgccgtc cgtctacgca 1380ctgatgctga
cgaataagga cagcgtgacc cgtgtgtatt acggtgacct gtatcgtgag
1440gacggtcact acatggccaa gaaaacgcct tatttcgatg caatcgatac
cctgctgcgt 1500gcgcgcatca aatacgtggc gggtggtcaa gacatggagg
tgaagaaagt tggtaatgac 1560ggcttgctga cgagcgtccg ctatggcaag
ggtgcgaaca atagcaccga ctggggcacg 1620actgaaaccc gtacccaagg
tatgggcgtt atcctgacga acaactatga tttccgcctg 1680ggcagcaacg
aaaccgtcac gatgaacatg ggccgtgcgc atcgcaatca gctgtatcgt
1740ccgctgctgc tgacgaccaa ggatggtctg gccacgtacc tgaatgatag
cgacgtgcct 1800tcgaatttgc tgaaacgcac ggactggaat ggtaacttga
cctttaatgc caacgatgtg 1860tttggtgtag agaacgtcca ggtcagcggt
tacctgggtg tttgggtacc ggttggtgct 1920aaagctaacc aggatgcgcg
tacccaaccg agcaaccgtg cgaacagcga tggtcaggtc 1980tataagtcgt
ctgcggcatt ggacagccag gtcatgtatg aggcgtttag caattttcag
2040gcatttgcgg acgatcaacc ggaactgtac atgaaccgcg ttctggcgaa
gaacaccgat 2100ctgctgaaag cgtggggcgt tactagcgtt ggcttgccgc
cacaatacgt tagcagcaaa 2160gacggcacct tcctggatag cactattgat
aacggctatg cgttcgatga tcgttacgac 2220atggcgctga gccagaacaa
caaatacggt tctctggagg acttgctgaa cgttctgcgc 2280gctctgcaca
aagacggtat tcaggcgatt gcggactggg tcccggatca aatctacaat
2340ttgccgggta aagaggttgt taatgcgacg cgtgttaacg gttacggtta
ccatcagcag 2400ggctaccaga ttgttgacca ggcgtacgtt gcaaacaccc
gtacggatgg taccgattat 2460cagggtcgtt acggtggtgc ttttctggac
gaactgaagg cgaagtaccc gagcattttc 2520aatcgtgtcc agattagcaa
cggtaaacag ctgccaacca atgagaaaat cacgaaatgg 2580tccgcgaaat
acttcaatgg cacgaacatc ctgggccgtg gtattaacta tgtgctgcgc
2640gacgacaaga ccaatcagta tttcaacacc agcgcaaacg gccaactgct
gccgacgcca 2700ctgcgcgaca ccggtgccat caccagcacg caagttttcc
agcgtcgtgg ccaagacgtc 2760tattttctgc gtgataacca ggttatcaaa
aacgagtttg tgcaagatgg taacggtaat 2820tggtactact tcggtgccga
cggtaaaatg acgaagggtg cacaaaacat caatagcaag 2880gattactatt
tcttcgataa tggcgtccag ctgcgtaatg cgctgcgtcg cgcgtccaat
2940ggttacacct actattatgg cctggacggt gccatgatca agaacgcttt
cgtcgatttt 3000gatgataagc accaacaggt gcgtgcgttt actacgcagg
gcacgatggt ggtcggtaat 3060ttgcactgga gcggtcacca cttctatttt
gaccgcgaaa cgggtatcca agccaaagac 3120cgcattgtgc gtaccgatga
tggcaagctg cactattatg tcgcacaaac cggcgatatg 3180ggccgcaatg
tgtttgcgac cgacagccgc acgggcaagc gctattactt tgatgcggac
3240ggcaacaccg ttacgggctc ccgtgtcatc gacggcaaga cctactactt
caaccaggac 3300ggttcggtcg gtaccgcgta cagcaatcgt gcggatagca
ttatctttga gaatggcaag 3360gctcgctata tcactccggc tggcgagatt
ggccgttcca tttttgtcta caacccggcg 3420accaaagcgt ggaattactt
cgacaaggaa ggtaaccgtg tcaccggtcg tcagtatatt 3480gacggcaatc
tgtactactt taaagaggac ggctcccaag tgaaaggtgc gattgttgaa
3540gagaacggta tcaagtacta ctacgaaccg ggcagcggta tcctggcgag
cggtcgttat 3600ctgcaagtcg gtgacgacca atggatctac ttcaaacacg
acggtagcct ggcgatcggt 3660caggttcgtg cagacggtgg ttacttgaaa
tactttgata agaatggcat ccaggtcaag 3720ggccaaacca ttgtggagga
tggtcatacc tattactacg atgccgactc cggtgctctg 3780gtgacctcta
gcttcgcgga gattgctccg aaccagtggg cctacttcaa taccgagggc
3840caagccctga agggcaaatg gaccatcaat ggtaaagagt actattttga
tcagaacggc 3900attcagtata aaggcaaggc agttaaggtc ggcagccgtt
acaaatacta tgacgagaat 3960gacggtcaac cggtcactaa ccgttttgcc
cagattgagc cgaacgtctg ggcgtacttt 4020ggtgccgatg gctacgcagt
tactggcgaa caggtgatta atggccagca cctgtacttc 4080gatcagtcgg
gtcgtcaggt taaaggtgcg tacgtcaccg tgaatggtca acgtcgttac
4140tacgacgcaa acacgggtga atacattccg ggtcgttaa
4179421392PRTStreptococcus sp C150 42Ile Asn Gly Lys Gln Tyr Tyr
Val Asn Ser Asp Gly Ser Val Arg Lys 1 5 10 15 Asn Phe Val Phe Glu
Gln Asp Gly Lys Ser Tyr Tyr Phe Asp Ala Glu 20 25 30 Thr Gly Ala
Leu Ala Thr Lys Ser Gln Asp Glu Phe Ser Thr Glu Pro 35 40 45 Ile
Lys Ala Ala Val Asp Phe Ser Ser Gly Asn Gln Leu Tyr Lys Asn 50 55
60 Asp Asn Lys Ser Leu Asp Gln Leu Asp Thr Phe Ile Thr Ala Asp Ala
65 70 75 80 Trp Tyr Arg Pro Lys Ser Ile Leu Lys Asp Gly Lys Thr Trp
Thr Ala 85 90 95 Ser Thr Glu Ala Asp Lys Arg Pro Leu Leu Met Val
Trp Trp Pro Asp 100 105 110 Lys Ser Thr Gln Val Asn Tyr Leu Asn Tyr
Met Gln Asn Gln Gly Leu 115 120 125 Gly Ala Gly Ser Phe Ser Thr Asn
Ser Ser Gln Glu Ser Leu Asn Leu 130 135 140 Ala Ala Lys Ala Val Gln
Thr Lys Ile Glu Glu Arg Ile Ala Arg Glu 145 150 155 160 Gly Asn Thr
Asn Trp Leu Arg Thr Ser Ile Asp Gln Phe Ile Lys Thr 165 170 175 Gln
Pro Gly Trp Asn Ser Ser Thr Glu Asn Ser Ser Tyr Asp His Leu 180 185
190 Gln Gly Gly Gln Leu Leu Phe Asn Asn Ser Lys Gly Asp Thr Gly Asn
195 200 205 Arg Thr Ser Tyr Ala Asn Ser Asp Tyr Arg Leu Leu Asn Arg
Thr Pro 210 215 220 Thr Asn Gln Ser Gly Thr Arg Lys Tyr Phe Lys Asp
Asn Ser Ile Gly 225 230 235 240 Gly Leu Glu Phe Leu Leu Ala Asn Asp
Ile Asp Asn Ser Asn Pro Ala 245 250 255 Val Gln Ala Glu Gln Leu Asn
Trp Leu His Phe Met Met Asn Ile Gly 260 265 270 Ser Ile Met Ala Asn
Asp Pro Thr Ala Asn Phe Asp Gly Leu Arg Val 275 280 285 Asp Ala Leu
Asp Asn Val Asp Ala Asp Leu Leu Gln Ile Ala Ser Asp 290 295 300 Tyr
Phe Lys Ala Val Tyr Gly Val Asp Lys Ser Glu Ala Asn Ala Ile 305 310
315 320 Lys His Leu Ser Tyr Leu Glu Ala Trp Ser Ala Asn Asp Pro Tyr
Tyr 325 330 335 Asn Lys Asp Thr Lys Gly Ala Gln Leu Pro Ile Asp Asn
Ala Leu Arg 340 345 350 Asn Ala Leu Thr Asn Leu Leu Met Arg Asp Lys
Asn Thr Arg Met Gln 355 360 365 Leu Gly Asp Met Thr Ala Phe Met Asn
Ser Ser Leu Asn Pro Arg Gly 370 375 380 Ala Asn Asp Lys Asn Gly Glu
Arg Met Ala Asn Tyr Ile Phe Thr Arg 385 390 395 400 Ala His Asp Thr
Glu Ala Gln Thr Ile Ile Gln Arg Ile Ile Arg Asp 405 410 415 Arg Ile
Asn Pro Asn Leu Phe Gly Tyr Asn Phe Thr Arg Asp Glu Ile 420 425 430
Lys Lys Ala Phe Glu Ile Tyr Asn Ala Asp Ile Asn Thr Ala His Lys 435
440 445 Thr Tyr Ala Ser Tyr Asn Leu Pro Ser Val Tyr Ala Leu Met Leu
Thr 450 455 460 Asn Lys Asp Ser Val Thr Arg Val Tyr Tyr Gly Asp Leu
Tyr Arg Glu 465 470 475 480 Asp Gly His Tyr Met Ala Lys Lys Thr Pro
Tyr Phe Asp Ala Ile Asp 485 490 495 Thr Leu Leu Arg Ala Arg Ile Lys
Tyr Val Ala Gly Gly Gln Asp Met 500 505 510 Glu Val Lys Lys Val Gly
Asn Asp Gly Leu Leu Thr Ser Val Arg Tyr 515 520 525 Gly Lys Gly Ala
Asn Asn Ser Thr Asp Trp Gly Thr Thr Glu Thr Arg 530 535 540 Thr Gln
Gly Met Gly Val Ile Leu Thr Asn Asn Tyr Asp Phe Arg Leu 545 550 555
560 Gly Ser Asn Glu Thr Val Thr Met Asn Met Gly Arg Ala His Arg Asn
565 570 575 Gln Leu Tyr Arg Pro Leu Leu Leu Thr Thr Lys Asp Gly Leu
Ala Thr 580 585 590 Tyr Leu Asn Asp Ser Asp Val Pro Ser Asn Leu Leu
Lys Arg Thr Asp 595 600 605 Trp Asn Gly Asn Leu Thr Phe Asn Ala Asn
Asp Val Phe Gly Val Glu 610 615 620 Asn Val Gln Val Ser Gly Tyr Leu
Gly Val Trp Val Pro Val Gly Ala 625 630 635 640 Lys Ala Asn Gln Asp
Ala Arg Thr Gln Pro Ser Asn Arg Ala Asn Ser 645 650 655 Asp Gly Gln
Val Tyr Lys Ser Ser Ala Ala Leu Asp Ser Gln Val Met 660 665 670 Tyr
Glu Ala Phe Ser Asn Phe Gln Ala Phe Ala Asp Asp Gln Pro Glu 675 680
685 Leu Tyr Met Asn Arg Val Leu Ala Lys Asn Thr Asp Leu Leu Lys Ala
690 695 700 Trp Gly Val Thr Ser Val Gly Leu Pro Pro Gln Tyr Val Ser
Ser Lys 705 710 715 720 Asp Gly Thr Phe Leu Asp Ser Thr Ile Asp Asn
Gly Tyr Ala Phe Asp 725 730 735 Asp Arg Tyr Asp Met Ala Leu Ser Gln
Asn Asn Lys Tyr Gly Ser Leu 740 745 750 Glu Asp Leu Leu Asn Val Leu
Arg Ala Leu His Lys Asp Gly Ile Gln 755 760 765 Ala Ile Ala Asp Trp
Val Pro Asp Gln Ile Tyr Asn Leu Pro Gly Lys 770 775 780 Glu Val Val
Asn Ala Thr Arg Val Asn Gly Tyr Gly Tyr His Gln Gln 785 790 795 800
Gly Tyr Gln Ile Val Asp Gln Ala Tyr Val Ala Asn Thr Arg Thr Asp 805
810 815 Gly Thr Asp Tyr Gln Gly Arg Tyr Gly Gly Ala Phe Leu Asp Glu
Leu 820 825 830 Lys Ala Lys Tyr Pro Ser Ile Phe Asn Arg Val Gln Ile
Ser Asn Gly 835 840 845 Lys Gln Leu Pro Thr Asn Glu Lys Ile Thr Lys
Trp Ser Ala Lys Tyr 850 855 860 Phe Asn Gly Thr Asn Ile
Leu Gly Arg Gly Ile Asn Tyr Val Leu Arg 865 870 875 880 Asp Asp Lys
Thr Asn Gln Tyr Phe Asn Thr Ser Ala Asn Gly Gln Leu 885 890 895 Leu
Pro Thr Pro Leu Arg Asp Thr Gly Ala Ile Thr Ser Thr Gln Val 900 905
910 Phe Gln Arg Arg Gly Gln Asp Val Tyr Phe Leu Arg Asp Asn Gln Val
915 920 925 Ile Lys Asn Glu Phe Val Gln Asp Gly Asn Gly Asn Trp Tyr
Tyr Phe 930 935 940 Gly Ala Asp Gly Lys Met Thr Lys Gly Ala Gln Asn
Ile Asn Ser Lys 945 950 955 960 Asp Tyr Tyr Phe Phe Asp Asn Gly Val
Gln Leu Arg Asn Ala Leu Arg 965 970 975 Arg Ala Ser Asn Gly Tyr Thr
Tyr Tyr Tyr Gly Leu Asp Gly Ala Met 980 985 990 Ile Lys Asn Ala Phe
Val Asp Phe Asp Asp Lys His Gln Gln Val Arg 995 1000 1005 Ala Phe
Thr Thr Gln Gly Thr Met Val Val Gly Asn Leu His Trp 1010 1015 1020
Ser Gly His His Phe Tyr Phe Asp Arg Glu Thr Gly Ile Gln Ala 1025
1030 1035 Lys Asp Arg Ile Val Arg Thr Asp Asp Gly Lys Leu His Tyr
Tyr 1040 1045 1050 Val Ala Gln Thr Gly Asp Met Gly Arg Asn Val Phe
Ala Thr Asp 1055 1060 1065 Ser Arg Thr Gly Lys Arg Tyr Tyr Phe Asp
Ala Asp Gly Asn Thr 1070 1075 1080 Val Thr Gly Ser Arg Val Ile Asp
Gly Lys Thr Tyr Tyr Phe Asn 1085 1090 1095 Gln Asp Gly Ser Val Gly
Thr Ala Tyr Ser Asn Arg Ala Asp Ser 1100 1105 1110 Ile Ile Phe Glu
Asn Gly Lys Ala Arg Tyr Ile Thr Pro Ala Gly 1115 1120 1125 Glu Ile
Gly Arg Ser Ile Phe Val Tyr Asn Pro Ala Thr Lys Ala 1130 1135 1140
Trp Asn Tyr Phe Asp Lys Glu Gly Asn Arg Val Thr Gly Arg Gln 1145
1150 1155 Tyr Ile Asp Gly Asn Leu Tyr Tyr Phe Lys Glu Asp Gly Ser
Gln 1160 1165 1170 Val Lys Gly Ala Ile Val Glu Glu Asn Gly Ile Lys
Tyr Tyr Tyr 1175 1180 1185 Glu Pro Gly Ser Gly Ile Leu Ala Ser Gly
Arg Tyr Leu Gln Val 1190 1195 1200 Gly Asp Asp Gln Trp Ile Tyr Phe
Lys His Asp Gly Ser Leu Ala 1205 1210 1215 Ile Gly Gln Val Arg Ala
Asp Gly Gly Tyr Leu Lys Tyr Phe Asp 1220 1225 1230 Lys Asn Gly Ile
Gln Val Lys Gly Gln Thr Ile Val Glu Asp Gly 1235 1240 1245 His Thr
Tyr Tyr Tyr Asp Ala Asp Ser Gly Ala Leu Val Thr Ser 1250 1255 1260
Ser Phe Ala Glu Ile Ala Pro Asn Gln Trp Ala Tyr Phe Asn Thr 1265
1270 1275 Glu Gly Gln Ala Leu Lys Gly Lys Trp Thr Ile Asn Gly Lys
Glu 1280 1285 1290 Tyr Tyr Phe Asp Gln Asn Gly Ile Gln Tyr Lys Gly
Lys Ala Val 1295 1300 1305 Lys Val Gly Ser Arg Tyr Lys Tyr Tyr Asp
Glu Asn Asp Gly Gln 1310 1315 1320 Pro Val Thr Asn Arg Phe Ala Gln
Ile Glu Pro Asn Val Trp Ala 1325 1330 1335 Tyr Phe Gly Ala Asp Gly
Tyr Ala Val Thr Gly Glu Gln Val Ile 1340 1345 1350 Asn Gly Gln His
Leu Tyr Phe Asp Gln Ser Gly Arg Gln Val Lys 1355 1360 1365 Gly Ala
Tyr Val Thr Val Asn Gly Gln Arg Arg Tyr Tyr Asp Ala 1370 1375 1380
Asn Thr Gly Glu Tyr Ile Pro Gly Arg 1385 1390
431455PRTStreptococcus mutans 43Met Glu Lys Lys Val Arg Phe Lys Leu
Arg Lys Val Lys Lys Arg Trp 1 5 10 15 Val Thr Val Ser Val Ala Ser
Ala Val Val Thr Leu Thr Ser Leu Ser 20 25 30 Gly Ser Leu Val Lys
Ala Asp Ser Thr Asp Asp Arg Gln Gln Ala Val 35 40 45 Thr Glu Ser
Gln Ala Ser Leu Val Thr Thr Ser Glu Ala Ala Lys Glu 50 55 60 Thr
Leu Thr Ala Thr Asp Thr Ser Thr Ala Thr Ser Ala Thr Ser Gln 65 70
75 80 Leu Thr Ala Thr Val Thr Asp Asn Val Ser Thr Thr Asn Gln Ser
Thr 85 90 95 Asn Thr Thr Ala Asn Thr Ala Asn Phe Asp Val Lys Pro
Thr Thr Thr 100 105 110 Ser Glu Gln Ser Lys Thr Asp Asn Ser Asp Lys
Ile Ile Ala Thr Ser 115 120 125 Lys Ala Val Asn Arg Leu Thr Ala Thr
Gly Lys Phe Val Pro Ala Asn 130 135 140 Asn Asn Thr Ala His Pro Lys
Thr Val Thr Asp Lys Ile Val Pro Ile 145 150 155 160 Lys Pro Lys Ile
Gly Lys Leu Lys Gln Pro Ser Ser Leu Ser Gln Asp 165 170 175 Asp Ile
Ala Ala Leu Gly Asn Val Lys Asn Ile Arg Lys Val Asn Gly 180 185 190
Lys Tyr Tyr Tyr Tyr Lys Glu Asp Gly Thr Leu Gln Lys Asn Tyr Ala 195
200 205 Leu Asn Ile Asn Gly Lys Thr Phe Phe Phe Asp Glu Thr Gly Ala
Leu 210 215 220 Ser Asn Asn Thr Leu Pro Ser Lys Lys Gly Asn Ile Thr
Asn Asn Asp 225 230 235 240 Asn Thr Asn Ser Phe Ala Gln Tyr Asn Gln
Val Tyr Ser Thr Asp Ala 245 250 255 Ala Asn Phe Glu His Val Asp His
Tyr Leu Thr Ala Glu Ser Trp Tyr 260 265 270 Arg Pro Lys Tyr Ile Leu
Lys Asp Gly Lys Thr Trp Thr Gln Ser Thr 275 280 285 Glu Lys Asp Phe
Arg Pro Leu Leu Met Thr Trp Trp Pro Asp Gln Glu 290 295 300 Thr Gln
Arg Gln Tyr Val Asn Tyr Met Asn Ala Gln Leu Gly Ile His 305 310 315
320 Gln Thr Tyr Asn Thr Ala Thr Ser Pro Leu Gln Leu Asn Leu Ala Ala
325 330 335 Gln Thr Ile Gln Thr Lys Ile Glu Glu Lys Ile Thr Ala Glu
Lys Asn 340 345 350 Thr Asn Trp Leu Arg Gln Thr Ile Ser Ala Phe Val
Lys Thr Gln Ser 355 360 365 Ala Trp Asn Ser Asp Ser Glu Lys Pro Phe
Asp Asp His Leu Gln Lys 370 375 380 Gly Ala Leu Leu Tyr Ser Asn Asn
Ser Lys Leu Thr Ser Gln Ala Asn 385 390 395 400 Ser Asn Tyr Arg Ile
Leu Asn Arg Thr Pro Thr Asn Gln Thr Gly Lys 405 410 415 Lys Asp Pro
Arg Tyr Thr Ala Asp Arg Thr Ile Gly Gly Tyr Glu Phe 420 425 430 Leu
Leu Ala Asn Asp Val Asp Asn Ser Asn Pro Val Val Gln Ala Glu 435 440
445 Gln Leu Asn Trp Leu His Phe Leu Met Asn Phe Gly Asn Ile Tyr Ala
450 455 460 Asn Asp Pro Asp Ala Asn Phe Asp Ser Ile Arg Val Asp Ala
Val Asp 465 470 475 480 Asn Val Asp Ala Asp Leu Leu Gln Ile Ala Gly
Asp Tyr Leu Lys Ala 485 490 495 Ala Lys Gly Ile His Lys Asn Asp Lys
Ala Ala Asn Asp His Leu Ser 500 505 510 Ile Leu Glu Ala Trp Ser Tyr
Asn Asp Thr Pro Tyr Leu His Asp Asp 515 520 525 Gly Asp Asn Met Ile
Asn Met Asp Asn Arg Leu Arg Leu Ser Leu Leu 530 535 540 Tyr Ser Leu
Ala Lys Pro Leu Asn Gln Arg Ser Gly Met Asn Pro Leu 545 550 555 560
Ile Thr Asn Ser Leu Val Asn Arg Thr Asp Asp Asn Ala Glu Thr Ala 565
570 575 Ala Val Pro Ser Tyr Ser Phe Ile Arg Ala His Asp Ser Glu Val
Gln 580 585 590 Asp Leu Ile Arg Asn Ile Ile Arg Ala Glu Ile Asn Pro
Asn Val Val 595 600 605 Gly Tyr Ser Phe Thr Met Glu Glu Ile Lys Lys
Ala Phe Glu Ile Tyr 610 615 620 Asn Lys Asp Leu Leu Ala Thr Glu Lys
Lys Tyr Thr His Tyr Asn Thr 625 630 635 640 Ala Leu Ser Tyr Ala Leu
Leu Leu Thr Asn Lys Ser Ser Val Pro Arg 645 650 655 Val Tyr Tyr Gly
Asp Met Phe Thr Asp Asp Gly Gln Tyr Met Ala His 660 665 670 Lys Thr
Ile Asn Tyr Glu Ala Ile Glu Thr Leu Leu Lys Ala Arg Ile 675 680 685
Lys Tyr Val Ser Gly Gly Gln Ala Met Arg Asn Gln Gln Val Gly Asn 690
695 700 Ser Glu Ile Ile Thr Ser Val Arg Tyr Gly Lys Gly Ala Leu Lys
Ala 705 710 715 720 Thr Asp Thr Gly Asp Arg Thr Thr Arg Thr Ser Gly
Val Ala Val Ile 725 730 735 Glu Gly Asn Asn Pro Ser Leu Arg Leu Lys
Ala Ser Asp Arg Val Val 740 745 750 Val Asn Met Gly Ala Ala His Lys
Asn Gln Ala Tyr Arg Pro Leu Leu 755 760 765 Leu Thr Thr Asp Asn Gly
Ile Lys Ala Tyr His Ser Asp Gln Glu Ala 770 775 780 Ala Gly Leu Val
Arg Tyr Thr Asn Asp Arg Gly Glu Leu Ile Phe Thr 785 790 795 800 Ala
Ala Asp Ile Lys Gly Tyr Ala Asn Pro Gln Val Ser Gly Tyr Leu 805 810
815 Gly Val Trp Val Pro Val Gly Ala Ala Ala Asp Gln Asp Val Arg Val
820 825 830 Ala Ala Ser Thr Ala Pro Ser Thr Asp Gly Lys Ser Val His
Gln Asn 835 840 845 Ala Ala Leu Asp Ser Arg Val Met Phe Glu Gly Phe
Ser Asn Phe Gln 850 855 860 Ala Phe Ala Thr Lys Lys Glu Glu Tyr Thr
Asn Val Val Ile Ala Lys 865 870 875 880 Asn Val Asp Lys Phe Ala Glu
Trp Gly Val Thr Asp Phe Glu Met Ala 885 890 895 Pro Gln Tyr Val Ser
Ser Thr Asp Gly Ser Phe Leu Asp Ser Val Ile 900 905 910 Gln Asn Gly
Tyr Ala Phe Thr Asp Arg Tyr Asp Leu Gly Ile Ser Lys 915 920 925 Pro
Asn Lys Tyr Gly Thr Ala Asp Asp Leu Val Lys Ala Ile Lys Ala 930 935
940 Leu His Ser Lys Gly Ile Lys Val Met Ala Asp Trp Val Pro Asp Gln
945 950 955 960 Met Tyr Ala Phe Pro Glu Lys Glu Val Val Thr Ala Thr
Arg Val Asp 965 970 975 Lys Tyr Gly Thr Pro Val Ala Gly Ser Gln Ile
Lys Asn Thr Leu Tyr 980 985 990 Val Val Asp Gly Lys Ser Ser Gly Lys
Asp Gln Gln Ala Lys Tyr Gly 995 1000 1005 Gly Ala Phe Leu Glu Glu
Leu Gln Ala Lys Tyr Pro Glu Leu Phe 1010 1015 1020 Ala Arg Lys Gln
Ile Ser Thr Gly Val Pro Met Asp Pro Ser Val 1025 1030 1035 Lys Ile
Lys Gln Trp Ser Ala Lys Tyr Phe Asn Gly Thr Asn Ile 1040 1045 1050
Leu Gly Arg Gly Ala Gly Tyr Val Leu Lys Asp Gln Ala Thr Asn 1055
1060 1065 Thr Tyr Phe Ser Leu Val Ser Asp Asn Thr Phe Leu Pro Lys
Ser 1070 1075 1080 Leu Val Asn Pro Asn His Gly Thr Ser Ser Ser Val
Thr Gly Leu 1085 1090 1095 Val Phe Asp Gly Lys Gly Tyr Val Tyr Tyr
Ser Thr Ser Gly Tyr 1100 1105 1110 Gln Ala Lys Asn Thr Phe Ile Ser
Leu Gly Asn Asn Trp Tyr Tyr 1115 1120 1125 Phe Asp Asn Asn Gly Tyr
Met Val Thr Gly Ala Gln Ser Ile Asn 1130 1135 1140 Gly Ala Asn Tyr
Tyr Phe Leu Ser Asn Gly Ile Gln Leu Arg Asn 1145 1150 1155 Ala Ile
Tyr Asp Asn Gly Asn Lys Val Leu Ser Tyr Tyr Gly Asn 1160 1165 1170
Asp Gly Arg Arg Tyr Glu Asn Gly Tyr Tyr Leu Phe Gly Gln Gln 1175
1180 1185 Trp Arg Tyr Phe Gln Asn Gly Ile Met Ala Val Gly Leu Thr
Arg 1190 1195 1200 Val His Gly Ala Val Gln Tyr Phe Asp Ala Ser Gly
Phe Gln Ala 1205 1210 1215 Lys Gly Gln Phe Ile Thr Thr Ala Asp Gly
Lys Leu Arg Tyr Phe 1220 1225 1230 Asp Arg Asp Ser Gly Asn Gln Ile
Ser Asn Arg Phe Val Arg Asn 1235 1240 1245 Ser Lys Gly Glu Trp Phe
Leu Phe Asp His Asn Gly Val Ala Val 1250 1255 1260 Thr Gly Thr Val
Thr Phe Asn Gly Gln Arg Leu Tyr Phe Lys Pro 1265 1270 1275 Asn Gly
Val Gln Ala Lys Gly Glu Phe Ile Arg Asp Ala Asp Gly 1280 1285 1290
His Leu Arg Tyr Tyr Asp Pro Asn Ser Gly Asn Glu Val Arg Asn 1295
1300 1305 Arg Phe Val Arg Asn Ser Lys Gly Glu Trp Phe Leu Phe Asp
His 1310 1315 1320 Asn Gly Ile Ala Val Thr Gly Ala Arg Val Val Asn
Gly Gln Arg 1325 1330 1335 Leu Tyr Phe Lys Ser Asn Gly Val Gln Ala
Lys Gly Glu Leu Ile 1340 1345 1350 Thr Glu Arg Lys Gly Arg Ile Lys
Tyr Tyr Asp Pro Asn Ser Gly 1355 1360 1365 Asn Glu Val Arg Asn Arg
Tyr Val Arg Thr Ser Ser Gly Asn Trp 1370 1375 1380 Tyr Tyr Phe Gly
Asn Asp Gly Tyr Ala Leu Ile Gly Trp His Val 1385 1390 1395 Val Glu
Gly Arg Arg Val Tyr Phe Asp Glu Asn Gly Val Tyr Arg 1400 1405 1410
Tyr Ala Ser His Asp Gln Arg Asn His Trp Asn Tyr Asp Tyr Arg 1415
1420 1425 Arg Asp Phe Gly Arg Gly Ser Ser Ser Ala Ile Arg Phe Arg
His 1430 1435 1440 Ser Arg Asn Gly Phe Phe Asp Asn Phe Phe Arg Phe
1445 1450 1455 442715DNAStreptococcus mutans 44gtgaacggca
aatactacta ctacaaagaa gatggaacat tacagaaaaa ctacgcactg 60aatatcaacg
gcaaaacatt tttctttgat gaaacgggag cgttatccaa taacacattg
120ccgagcaaaa aaggcaacat cacgaacaac gataacacaa actcctttgc
tcaatataac 180caggtgtact caacggatgc agcgaatttt gaacatgtcg
accattatct gacagccgaa 240tcctggtatc gccctaaata catccttaaa
gatggaaaaa catggacgca gtctacagaa 300aaagacttta gaccgctgct
tatgacgtgg tggcctgatc aagaaacaca acgccagtat 360gtcaattaca
tgaacgccca actgggcatc catcagacat ataacacagc aacgagcccg
420ctgcagctta atttagctgc ccaaacgatc cagacaaaaa tcgaagaaaa
aatcacggct 480gagaaaaata caaactggtt gagacaaacg atcagcgcat
ttgttaaaac acagtctgcg 540tggaatagcg attctgaaaa accgtttgat
gaccatttgc aaaaaggagc attgttgtat 600tccaacaact caaaactgac
gtcccaggca aattcaaact accgtatctt gaaccggaca 660ccgacgaatc
aaacaggcaa aaaagatcct agatatacgg cggaccgcac aattggcgga
720tacgaatttc tgcttgctaa cgatgttgac aattctaacc cggttgtgca
agccgaacag 780ttgaactggc tgcattttct tatgaacttt ggaaacatct
acgcgaacga tcctgacgct 840aattttgatt caattagagt cgatgccgta
gacaatgttg atgcagactt attgcaaatc 900gcgggagatt atcttaaagc
agcgaaaggt attcataaaa acgataaagc tgccaatgac 960catttaagca
tcttggaagc atggtcttat aatgatacac cgtacttaca tgatgacgga
1020gataacatga tcaacatgga caaccgtttg cggctgagcc tgctttattc
tttagccaaa 1080ccgttgaacc agcgtagcgg catgaatcct ctgatcacaa
actctcttgt aaatcggacg 1140gatgacaacg ctgaaacagc agcggttccg
tcctattcat ttattagagc ccatgattct 1200gaagtgcaag accttatcag
aaatattatc cgcgcagaaa ttaatcctaa cgtcgtaggc 1260tactcattta
cgatggaaga aatcaaaaaa gcgtttgaaa tctacaacaa agatttattg
1320gctacagaga aaaaatatac gcattacaac acagcgttaa gctatgctct
gcttttaacg 1380aataaatcaa gcgtgccgag agtctattac ggcgatatgt
ttacagatga cggacagtat 1440atggctcata aaacgatcaa ctacgaagct
atcgaaacat tgctgaaagc cagaattaaa 1500tatgtctctg gtggccaagc
catgcgcaac caacaagtgg gaaattccga aattatcacg 1560tcagtccgtt
atggcaaagg agcgcttaaa gctacagata cgggcgacag aacaacgcgc
1620acatcaggag tggcagtcat cgaaggcaat aacccgtccc ttagattaaa
agcgtcagat 1680cgcgttgtgg tcaacatggg agctgcccat aaaaatcagg
cttatcggcc tcttttattg 1740acaacggata atggcattaa agcctatcat
tcagaccaag aagcagcggg tctggtccgt
1800tacacgaacg atcggggcga acttatcttt acagctgccg acattaaagg
atatgcaaat 1860cctcaggttt caggctactt aggagtatgg gttcctgtgg
gcgcagcggc tgatcaagac 1920gtcagagtag ccgcatccac ggcgccgtca
acagacggaa aaagcgtaca tcagaacgcg 1980gctctggata gccgcgttat
gtttgaaggc ttttctaact ttcaagcctt tgcaacgaaa 2040aaagaagaat
acacaaacgt agttatcgca aaaaatgtag ataaatttgc ggaatgggga
2100gttacggact ttgaaatggc gccgcagtat gtatcttcca cagatggcag
ctttctggac 2160tctgttatcc aaaacggata tgcatttacg gatagatacg
accttggcat ctcaaaacct 2220aacaaatacg gaacagcgga tgacctggtt
aaagccatca aagcacttca tagcaaaggc 2280attaaagtaa tggcagattg
ggttccggac cagatgtatg cgtttcctga aaaagaagtg 2340gtcacagcta
cgcgcgtaga taaatatggt acgccggttg ctggcagcca aatcaaaaac
2400acactgtacg tagttgatgg caaatcaagc ggaaaagacc aacaggccaa
atatggaggt 2460gcatttctgg aagaacttca agctaaatac cctgaacttt
ttgcccgtaa acagatctct 2520acaggagtgc cgatggaccc gtccgtcaaa
atcaaacagt ggtcagcaaa atactttaac 2580ggcacaaaca tcttaggtcg
gggcgcagga tatgtgttga aagaccaagc gacaaacacg 2640tactttagcc
tggtgtctga taatacattt ctgccgaaat cacttgtcaa tcctaaccat
2700ggaacgtctt cctaa 271545904PRTStreptococcus mutans 45Val Asn Gly
Lys Tyr Tyr Tyr Tyr Lys Glu Asp Gly Thr Leu Gln Lys 1 5 10 15 Asn
Tyr Ala Leu Asn Ile Asn Gly Lys Thr Phe Phe Phe Asp Glu Thr 20 25
30 Gly Ala Leu Ser Asn Asn Thr Leu Pro Ser Lys Lys Gly Asn Ile Thr
35 40 45 Asn Asn Asp Asn Thr Asn Ser Phe Ala Gln Tyr Asn Gln Val
Tyr Ser 50 55 60 Thr Asp Ala Ala Asn Phe Glu His Val Asp His Tyr
Leu Thr Ala Glu 65 70 75 80 Ser Trp Tyr Arg Pro Lys Tyr Ile Leu Lys
Asp Gly Lys Thr Trp Thr 85 90 95 Gln Ser Thr Glu Lys Asp Phe Arg
Pro Leu Leu Met Thr Trp Trp Pro 100 105 110 Asp Gln Glu Thr Gln Arg
Gln Tyr Val Asn Tyr Met Asn Ala Gln Leu 115 120 125 Gly Ile His Gln
Thr Tyr Asn Thr Ala Thr Ser Pro Leu Gln Leu Asn 130 135 140 Leu Ala
Ala Gln Thr Ile Gln Thr Lys Ile Glu Glu Lys Ile Thr Ala 145 150 155
160 Glu Lys Asn Thr Asn Trp Leu Arg Gln Thr Ile Ser Ala Phe Val Lys
165 170 175 Thr Gln Ser Ala Trp Asn Ser Asp Ser Glu Lys Pro Phe Asp
Asp His 180 185 190 Leu Gln Lys Gly Ala Leu Leu Tyr Ser Asn Asn Ser
Lys Leu Thr Ser 195 200 205 Gln Ala Asn Ser Asn Tyr Arg Ile Leu Asn
Arg Thr Pro Thr Asn Gln 210 215 220 Thr Gly Lys Lys Asp Pro Arg Tyr
Thr Ala Asp Arg Thr Ile Gly Gly 225 230 235 240 Tyr Glu Phe Leu Leu
Ala Asn Asp Val Asp Asn Ser Asn Pro Val Val 245 250 255 Gln Ala Glu
Gln Leu Asn Trp Leu His Phe Leu Met Asn Phe Gly Asn 260 265 270 Ile
Tyr Ala Asn Asp Pro Asp Ala Asn Phe Asp Ser Ile Arg Val Asp 275 280
285 Ala Val Asp Asn Val Asp Ala Asp Leu Leu Gln Ile Ala Gly Asp Tyr
290 295 300 Leu Lys Ala Ala Lys Gly Ile His Lys Asn Asp Lys Ala Ala
Asn Asp 305 310 315 320 His Leu Ser Ile Leu Glu Ala Trp Ser Tyr Asn
Asp Thr Pro Tyr Leu 325 330 335 His Asp Asp Gly Asp Asn Met Ile Asn
Met Asp Asn Arg Leu Arg Leu 340 345 350 Ser Leu Leu Tyr Ser Leu Ala
Lys Pro Leu Asn Gln Arg Ser Gly Met 355 360 365 Asn Pro Leu Ile Thr
Asn Ser Leu Val Asn Arg Thr Asp Asp Asn Ala 370 375 380 Glu Thr Ala
Ala Val Pro Ser Tyr Ser Phe Ile Arg Ala His Asp Ser 385 390 395 400
Glu Val Gln Asp Leu Ile Arg Asn Ile Ile Arg Ala Glu Ile Asn Pro 405
410 415 Asn Val Val Gly Tyr Ser Phe Thr Met Glu Glu Ile Lys Lys Ala
Phe 420 425 430 Glu Ile Tyr Asn Lys Asp Leu Leu Ala Thr Glu Lys Lys
Tyr Thr His 435 440 445 Tyr Asn Thr Ala Leu Ser Tyr Ala Leu Leu Leu
Thr Asn Lys Ser Ser 450 455 460 Val Pro Arg Val Tyr Tyr Gly Asp Met
Phe Thr Asp Asp Gly Gln Tyr 465 470 475 480 Met Ala His Lys Thr Ile
Asn Tyr Glu Ala Ile Glu Thr Leu Leu Lys 485 490 495 Ala Arg Ile Lys
Tyr Val Ser Gly Gly Gln Ala Met Arg Asn Gln Gln 500 505 510 Val Gly
Asn Ser Glu Ile Ile Thr Ser Val Arg Tyr Gly Lys Gly Ala 515 520 525
Leu Lys Ala Thr Asp Thr Gly Asp Arg Thr Thr Arg Thr Ser Gly Val 530
535 540 Ala Val Ile Glu Gly Asn Asn Pro Ser Leu Arg Leu Lys Ala Ser
Asp 545 550 555 560 Arg Val Val Val Asn Met Gly Ala Ala His Lys Asn
Gln Ala Tyr Arg 565 570 575 Pro Leu Leu Leu Thr Thr Asp Asn Gly Ile
Lys Ala Tyr His Ser Asp 580 585 590 Gln Glu Ala Ala Gly Leu Val Arg
Tyr Thr Asn Asp Arg Gly Glu Leu 595 600 605 Ile Phe Thr Ala Ala Asp
Ile Lys Gly Tyr Ala Asn Pro Gln Val Ser 610 615 620 Gly Tyr Leu Gly
Val Trp Val Pro Val Gly Ala Ala Ala Asp Gln Asp 625 630 635 640 Val
Arg Val Ala Ala Ser Thr Ala Pro Ser Thr Asp Gly Lys Ser Val 645 650
655 His Gln Asn Ala Ala Leu Asp Ser Arg Val Met Phe Glu Gly Phe Ser
660 665 670 Asn Phe Gln Ala Phe Ala Thr Lys Lys Glu Glu Tyr Thr Asn
Val Val 675 680 685 Ile Ala Lys Asn Val Asp Lys Phe Ala Glu Trp Gly
Val Thr Asp Phe 690 695 700 Glu Met Ala Pro Gln Tyr Val Ser Ser Thr
Asp Gly Ser Phe Leu Asp 705 710 715 720 Ser Val Ile Gln Asn Gly Tyr
Ala Phe Thr Asp Arg Tyr Asp Leu Gly 725 730 735 Ile Ser Lys Pro Asn
Lys Tyr Gly Thr Ala Asp Asp Leu Val Lys Ala 740 745 750 Ile Lys Ala
Leu His Ser Lys Gly Ile Lys Val Met Ala Asp Trp Val 755 760 765 Pro
Asp Gln Met Tyr Ala Phe Pro Glu Lys Glu Val Val Thr Ala Thr 770 775
780 Arg Val Asp Lys Tyr Gly Thr Pro Val Ala Gly Ser Gln Ile Lys Asn
785 790 795 800 Thr Leu Tyr Val Val Asp Gly Lys Ser Ser Gly Lys Asp
Gln Gln Ala 805 810 815 Lys Tyr Gly Gly Ala Phe Leu Glu Glu Leu Gln
Ala Lys Tyr Pro Glu 820 825 830 Leu Phe Ala Arg Lys Gln Ile Ser Thr
Gly Val Pro Met Asp Pro Ser 835 840 845 Val Lys Ile Lys Gln Trp Ser
Ala Lys Tyr Phe Asn Gly Thr Asn Ile 850 855 860 Leu Gly Arg Gly Ala
Gly Tyr Val Leu Lys Asp Gln Ala Thr Asn Thr 865 870 875 880 Tyr Phe
Ser Leu Val Ser Asp Asn Thr Phe Leu Pro Lys Ser Leu Val 885 890 895
Asn Pro Asn His Gly Thr Ser Ser 900 461308DNAPenicillium marneffei
46atgaagcaaa ccacttccct cctcctctca gccatcgcgg caaccagcag cttcagcgga
60ctaacagccg ctcaaaaact cgcctttgcg cacgtcgtcg tcggcaacac tgcagcacac
120acccaatcca cctgggaaag cgacattact ctcgcccata actccggtct
agatgccttt 180gccttgaacg gtggattccc cgatggcaac atccccgcac
aaatcgccaa cgcttttgcg 240gcttgtgaag ccctttcaaa tggcttcaag
ctattcattt cgtttgacta cctcggtggt 300ggtcagccct ggcctgcctc
agaggttgtg tctatgctga agcagtatgc cagttccgat 360tgttatttgg
cctatgatgg caagcccttt gtctcaactt ttgagggcac cggaaatatt
420gcggattggg cgcacggagg tcccattcgg tcggcggtgg atgtttactt
tgtgccggat 480tggacgagtt tggggcctgc tgggattaag tcgtatctcg
acaatatcga tggatttttc 540agctggaaca tgtggcctgt aggtgcggcc
gatatgaccg acgagcctga tttcgaatgg 600ctcgatgcaa ttgggtccga
caagacgtac atgatgggcg tttcgccatg gttcttccac 660agtgcaagcg
gaggcaccga ctgggtctgg cgtggtgatg acctctggga tgaccgatgg
720attcaagtca cctgcgtcga ccctcaattt gtccaggtcg tcacatggaa
cgactggggt 780gaatcctcct acatcggccc cttcgtgacc gctagcgaag
tccccgccgg ctcattagcc 840tacgtcgaca acatgtcaca ccaaagcttc
cttgacttct tgcctttcta catcgccacc 900ttcaaaggcg acacattcaa
catctcccgc gaccagatgc aatactggta ccgcctcgca 960cccgccgcag
caggcagcgc gtgcggcgta tacggcaatg atcccgatca aggccagact
1020accgttgacg tcaactccat cgttcaggac aaggtgtttt tcagtgcttt
gttgacggct 1080gatgctactg taacggtgca gattggtagt aatgctgcgg
tttcatatga tggtgttgct 1140ggtatgaacc actggagtca ggactttaat
ggccagaccg gcgcggttac gtttagtgtt 1200gtcaggggtg gcgctacagt
taagagtggt attggagccg agattacggc ttcgacttcg 1260ttgtcgaatg
ggtgcactaa ttacaaccct tgggttggta gtttctaa 130847435PRTPenicillium
marneffei 47Met Lys Gln Thr Thr Ser Leu Leu Leu Ser Ala Ile Ala Ala
Thr Ser 1 5 10 15 Ser Phe Ser Gly Leu Thr Ala Ala Gln Lys Leu Ala
Phe Ala His Val 20 25 30 Val Val Gly Asn Thr Ala Ala His Thr Gln
Ser Thr Trp Glu Ser Asp 35 40 45 Ile Thr Leu Ala His Asn Ser Gly
Leu Asp Ala Phe Ala Leu Asn Gly 50 55 60 Gly Phe Pro Asp Gly Asn
Ile Pro Ala Gln Ile Ala Asn Ala Phe Ala 65 70 75 80 Ala Cys Glu Ala
Leu Ser Asn Gly Phe Lys Leu Phe Ile Ser Phe Asp 85 90 95 Tyr Leu
Gly Gly Gly Gln Pro Trp Pro Ala Ser Glu Val Val Ser Met 100 105 110
Leu Lys Gln Tyr Ala Ser Ser Asp Cys Tyr Leu Ala Tyr Asp Gly Lys 115
120 125 Pro Phe Val Ser Thr Phe Glu Gly Thr Gly Asn Ile Ala Asp Trp
Ala 130 135 140 His Gly Gly Pro Ile Arg Ser Ala Val Asp Val Tyr Phe
Val Pro Asp 145 150 155 160 Trp Thr Ser Leu Gly Pro Ala Gly Ile Lys
Ser Tyr Leu Asp Asn Ile 165 170 175 Asp Gly Phe Phe Ser Trp Asn Met
Trp Pro Val Gly Ala Ala Asp Met 180 185 190 Thr Asp Glu Pro Asp Phe
Glu Trp Leu Asp Ala Ile Gly Ser Asp Lys 195 200 205 Thr Tyr Met Met
Gly Val Ser Pro Trp Phe Phe His Ser Ala Ser Gly 210 215 220 Gly Thr
Asp Trp Val Trp Arg Gly Asp Asp Leu Trp Asp Asp Arg Trp 225 230 235
240 Ile Gln Val Thr Cys Val Asp Pro Gln Phe Val Gln Val Val Thr Trp
245 250 255 Asn Asp Trp Gly Glu Ser Ser Tyr Ile Gly Pro Phe Val Thr
Ala Ser 260 265 270 Glu Val Pro Ala Gly Ser Leu Ala Tyr Val Asp Asn
Met Ser His Gln 275 280 285 Ser Phe Leu Asp Phe Leu Pro Phe Tyr Ile
Ala Thr Phe Lys Gly Asp 290 295 300 Thr Phe Asn Ile Ser Arg Asp Gln
Met Gln Tyr Trp Tyr Arg Leu Ala 305 310 315 320 Pro Ala Ala Ala Gly
Ser Ala Cys Gly Val Tyr Gly Asn Asp Pro Asp 325 330 335 Gln Gly Gln
Thr Thr Val Asp Val Asn Ser Ile Val Gln Asp Lys Val 340 345 350 Phe
Phe Ser Ala Leu Leu Thr Ala Asp Ala Thr Val Thr Val Gln Ile 355 360
365 Gly Ser Asn Ala Ala Val Ser Tyr Asp Gly Val Ala Gly Met Asn His
370 375 380 Trp Ser Gln Asp Phe Asn Gly Gln Thr Gly Ala Val Thr Phe
Ser Val 385 390 395 400 Val Arg Gly Gly Ala Thr Val Lys Ser Gly Ile
Gly Ala Glu Ile Thr 405 410 415 Ala Ser Thr Ser Leu Ser Asn Gly Cys
Thr Asn Tyr Asn Pro Trp Val 420 425 430 Gly Ser Phe 435
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