U.S. patent application number 15/369598 was filed with the patent office on 2017-07-13 for methods, devices and systems for enhanced transduction efficiency.
The applicant listed for this patent is Emory University, Georgia Tech Research Corporation. Invention is credited to Christopher Doering, Wilbur Lam, David Myers, Harold Spencer, Reginald Tran.
Application Number | 20170198303 15/369598 |
Document ID | / |
Family ID | 59274789 |
Filed Date | 2017-07-13 |
United States Patent
Application |
20170198303 |
Kind Code |
A1 |
Tran; Reginald ; et
al. |
July 13, 2017 |
Methods, Devices and Systems for Enhanced Transduction
Efficiency
Abstract
The systems and methods are directed to leveraging the channel
geometry and configuration to overcome diffusion limitations of
current transduction systems. The methods may include a method of
transducing target cells using a device. The device may include at
least one continuous channel. The method may include delivering
target cells and viral vectors into a transduction region of the
channel through a first inlet/outlet simultaneously and/or
consecutively when one or more additional inlets/outlets that are
located in a region of the channel downstream of the transduction
are closed. After transducing for some incubation time, a flushing
solution may be delivered through one or more of the additional
inlets/outlets. The method may include collecting transduced cells
after the transducing incubation time and the delivering of the
flushing solution.
Inventors: |
Tran; Reginald; (Atlanta,
GA) ; Lam; Wilbur; (Atlanta, GA) ; Myers;
David; (Atlanta, GA) ; Doering; Christopher;
(Atlanta, GA) ; Spencer; Harold; (Marietta,
GA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Emory University
Georgia Tech Research Corporation |
Atlanta
Atlanta |
GA
GA |
US
US |
|
|
Family ID: |
59274789 |
Appl. No.: |
15/369598 |
Filed: |
December 5, 2016 |
Related U.S. Patent Documents
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
|
|
62263137 |
Dec 4, 2015 |
|
|
|
Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C12N 15/86 20130101;
C12N 15/87 20130101 |
International
Class: |
C12N 15/86 20060101
C12N015/86 |
Claims
1. A method of transducing target cells using a device, the device
including at least one continuous channel, and comprising the
following steps delivering target cells and viral vectors into a
transduction region of the channel through a first inlet/outlet
simultaneously and/or consecutively when one or more additional
inlets/outlets that are located in a region of the channel
downstream of the transduction are closed; after transducing for
some incubation time, delivering a flushing solution through one or
more of the additional inlets/outlets; and collecting transduced
cells after the transducing incubation time and the delivering of
the flushing solution.
2. The method according to claim 1, further comprising: providing
the device, the device including: the transduction region; a
flushing region; and a connection region disposed between the
transduction region and the flushing region, wherein the
transduction region, the flushing region, and the connection region
forms a continuous channel.
3. The method according to claim 2, wherein: wherein the first
inlet/outlet is disposed at a first end of the channel in the
transduction region; and wherein the one or more additional
inlets/outlets are disposed in the transduction and/or connection
region.
4. The method according to claim 1, wherein: the one or more
additional inlets/outlets include a second inlet/outlet and a third
outlet that is disposed on the channel further downstream than the
second port; the delivering of the target cells and/or the viral
vector through the first inlet/outlet when the third port is
outlet; the delivering of the flushing solution is through the
second inlet/outlet and/or the third inlet/outlet; and excess cells
and/or viral vectors can be collected through the second
inlet/outlet.
5. The method according to claim 4, wherein the delivering of the
flushing solution is through the second inlet/outlet when the third
inlet/outlet is closed and the method further comprises: closing
the second inlet/outlet; and delivering a flushing solution through
the third inlet/outlet, wherein the collecting of the transduced
cells is after the delivering of the flushing solution through the
second inlet/outlet and third inlet/outlet.
6. The method according to claim 5, further comprising: providing
the device, the device including: the transduction region; a
flushing region; and a connection region disposed between the
transduction region and the flushing region. wherein the
transduction region, the flushing region, and the connection region
forms a continuous channel; wherein the second inlet/outlet is
disposed between the flushing region and the connection region; and
wherein the third inlet/outlet is disposed at the end of the
flushing region.
7. The method according to claim 6, wherein: wherein the channel
disposed in the transduction region is coated with a removable,
cell adhesive coating.
8. The method according to claim 7, wherein the coating is
RectroNectin.
9. The method according to claim 6, wherein: the flushing region
includes a split portion in which the channel splits into two
segments; and the flushing through the third inlet/outlet causes
the fluid to flush out the cells along sides of the channel.
10. The method according to claim 6, wherein the channel has height
of about 50-100 .mu.m and a width within about 3000-5000 .mu.m.
11. A device configured for transducing target cells with viral
vector; the device including: a transduction region; a flushing
region; a connection region disposed between the transduction
region and the flushing region, wherein the transduction region,
the flushing region, and the connection region forms a continuous
channel; and one or more inlets/outlets disposed at end of the
transduction region and one or more inlets/outlets disposed on the
flushing region; wherein the channel has a height and a width
greater than the height.
12. The device according to claim 11, wherein the channel has
height of about 50-100 .mu.m and a width within about 3000-5000
.mu.m.
13. The device according to claim 11, wherein the channel has
height of about 50-250 .mu.m and a width of about 1000-5000
.mu.m.
14. The device according to claim 11, wherein channel has a total
surface area of about 9.5-15 cm.sup.2.
15. The device according to claim 11, further comprising: a second
inlet/outlet disposed between the flushing region and the
connection region; and a third inlet/outlet is disposed at an end
of the flushing region; wherein the second inlet/outlet is disposed
between the first inlet/outlet and the third inlet/outlet.
16. The device according to claim 15, wherein: the flushing region
extends between the second inlet/outlet and the third inlet/outlet;
and the flushing region includes a splitting portion in which the
channel splits into two sections.
17. The device according to claim 11, wherein: wherein the channel
disposed in the transduction region is coated with a removable,
cell adhesive coating.
18. The device according to claim 17, wherein the coating is
RectroNectin.
19. The device according to claim 11, further comprising: one or
more adaptors, the one or more adapters configured to communicate
with each inlet/outlet.
20. The device according to claim 19, wherein the one or more
adapters are disposed on the inlet/outlet and/or on a side of the
device.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of U.S. Provisional
Application No. 62/263,137 filed Dec. 4, 2015. The entirety of this
application is hereby incorporated by reference for all
purposes.
BACKGROUND
[0002] Through decades of research and innovation, viruses that
once plagued humanity with sickness and disease have been
transformed into tools with the potential to provide a permanent
cure for various genetic disorders and cancers. In recent years,
researchers and clinicians have achieved success in treating a
variety of diseases using viral vectors to achieve transduction.
However, currently utilized methods and platforms for cell culture
and transduction can be inefficient. Current platforms can also
require a substantial amount of viral vectors, due to the diffusion
limitations that result in a substantial amount of viral particles
decaying before they can reach the cells. One solution has been to
use greater quantities of the virus but that can be both
cost-prohibitive (e.g., due to current production processes) and
potentially toxic to the target cells.
SUMMARY
[0003] Thus, there is need for a more efficient systems, devices
and methods that can achieve therapeutic levels of transduction
using less amount of the virus.
[0004] In some embodiments, the methods may include a method of
transducing target cells with a viral vector using a device. The
device may include at least one continuous channel. The method may
include delivering target cells and viral vectors into a
transduction region of the channel through a first inlet/outlet
simultaneously and/or consecutively when one or more additional
inlets/outlets that are located in a region of the channel
downstream of the transduction are closed. After transducing for
some incubation time, a flushing solution may be delivered through
one or more of the additional inlets/outlets. The method may
include collecting transduced cells after the transducing
incubation time and the delivering of the flushing solution.
[0005] In some embodiments, the devices may include a device or a
platform configured to transduce target cells with a viral vector.
In some embodiments, the device may include a flushing region; and
a connection region disposed between the transduction region and
the flushing region. The transduction region, the flushing region,
and the connection region may form or define a continuous channel.
The device may further include one or more inlets/outlets disposed
at end of the transduction region and one or more inlets/outlets
disposed on the flushing region. The channel may have a height and
a width greater than the height.
[0006] Additional advantages of the disclosure will be set forth in
part in the description which follows, and in part will be obvious
from the description, or may be learned by practice of the
disclosure. The advantages of the disclosure will be realized and
attained by means of the elements and combinations particularly
pointed out in the appended claims. It is to be understood that
both the foregoing general description and the following detailed
description are exemplary and explanatory only and are not
restrictive of the disclosure, as claimed.
BRIEF DESCRIPTION OF THE DRAWINGS
[0007] The disclosure can be better understood with the reference
to the following drawings and description. The components in the
figures are not necessarily to scale, emphasis being placed upon
illustrating the principles of the disclosure.
[0008] FIG. 1 shows an example of a device according to some
embodiments;
[0009] FIG. 2A shows an enlarged view of the cell processing device
shown in FIG. 1 and FIGS. 2B and 2C show additional enlarged views
of the cell processing device shown in FIGS. 1 and 2A;
[0010] FIG. 3 shows a cross-sectional view of a channel shown in
FIG. 2B according to some embodiments;
[0011] FIG. 4A shows examples (i)-(iv) of different channel
geometries; FIG. 4B show examples (i)-(iv) of failures of the
different channel geometries (i)-(iv) shown in FIG. 4A and example
(v) of a cross-sectional view of failed channel geometries, for
example, shown in examples FIGS. 4B (i) and (iii); and FIG. 4C
shows a legend for examples (i)-(v) shown in FIG. 4B;
[0012] FIG. 5 is a graph that shows how fluidic resistance is
increased from a baseline for fold decreases in either channel
height (diamonds) or channel width (squares); and
[0013] FIG. 6 shows a method of transducing target cells with a
viral vector using a device according to embodiments.
DESCRIPTION OF THE EMBODIMENTS
[0014] In the following description, numerous specific details are
set forth such as examples of specific components, devices,
methods, etc., in order to provide a thorough understanding of
embodiments of the disclosure. It will be apparent, however, to one
skilled in the art that these specific details need not be employed
to practice embodiments of the disclosure. In other instances,
well-known materials or methods have not been described in detail
in order to avoid unnecessarily obscuring embodiments of the
disclosure. While the disclosure is susceptible to various
modifications and alternative forms, specific embodiments thereof
are shown by way of example in the drawings and will herein be
described in detail. It should be understood, however, that there
is no intent to limit the disclosure to the particular forms
disclosed, but on the contrary, the disclosure is to cover all
modifications, equivalents, and alternatives falling within the
spirit and scope of the disclosure.
[0015] The systems, methods, and devices according to the
disclosure can dramatically increase the transduction efficiency by
increasing the contact between the vectors and target cells, for
example, before the degradation of the vectors (e.g., viral
vector). By enabling large quantities of cells to be exposed to
sufficient vector concentrations, transduction times can be reduced
while minimizing vector waste. Therefore, the systems, methods, and
devices according to the disclosure can reduce the total amounts of
the vector used to achieve sufficient vector concentrations can
also be reduced overcome issues related to the various sources of
variability in vector titration and inconsistent infectivity
between various cell types. Thus, the systems, methods, and devices
according to the disclosure can achieve transduction at a reduced
cost as compared to conventional transduction systems.
[0016] As used herein, the term "vector" means the combination of
any carrier and any foreign gene(s). The vector may include
non-viral vectors, viral vectors, among others, and any combination
thereof. For example, non-viral vectors may include but are not
limited to liposomes, spheroplasts, red blood cell ghosts,
colloidal metals, calcium phosphate, DEAE Dextran plasmids, among
others, or a combination thereof. The viral vectors may include but
are not limited to retroviral vectors, lentiviral vectors,
pseudotype vectors, adenoviral vectors, adeno-associated viral
vectors, among others, and any combination thereof.
[0017] In some embodiments, the systems, devices, methods can be
configured for fluid-based transduction protocols. For example, the
protocols may include static (e.g., single loading), flow
transduction (i.e., continuous loading), among others, or a
combination thereof. Static transduction and flow transduction
protocols according to some embodiments are discussed in more
detail below.
[0018] In some embodiments, the device can be configured for
ex-vivo, static and/or flow transduction. In some embodiments, the
device may be in a form of an encased cultured plate device, a
bag-like device, a flask-like device among others, or a combination
thereof. In some embodiments, the device may include one or more
closed fluid channels.
[0019] As used herein, the term "communicate" (e.g., a first
component "communicates with" or "is in communication with" a
second component) and grammatical variations thereof are used
herein to indicate a fluidic relationship between two or more
components and/or channel segments. As such, the fact that one
component/channel segment is said to communicate with a second
component/channel segment is not intended to exclude the
possibility that additional components may be present between,
and/or operatively associated or engaged with, the first and second
components.
[0020] FIGS. 1 and 2 show an exemplary device 100 according to some
embodiments. As shown in FIG. 1, the device 100 may have a body
110. The body 110 may have a first end 112, an opposing second end
114, and a length (L.sub.d) therebetween. The body 110 may also
have a first side 116 and an opposing, second side 118 and a width
(W.sub.d) therebetween. In some embodiments, the length and the
width of the body 110 may be different. For example, as shown in
FIG. 1, the length may be longer than the width of the body 110. In
some embodiments, the length and the width may be the same.
[0021] In some embodiments, the device 100 may include a cell
processing section 200 disposed within the body. In some
embodiments, the cell processing section 200 may include a
plurality of fluid channels. In some embodiments, the cell
processing section 200 may include one or more regions of one or
more fluid channels (referred to as "one or more regions") that are
in fluid communication with each other.
[0022] In some embodiments, the one or more regions may include:
(i) one or more transduction/transfection regions 210 (later
referred to as "transduction regions"); (ii) one or more flushing
regions 230 that are in fluid communication with the one or more
transduction/transfection regions; (iii) additional region(s);
and/or (iv) any combination thereof. The transduction region(s) 210
can correspond to region(s) of the channel in which
transduction/transfection can be performed and the flushing
region(s) 230 can correspond to region(s) of the channel in which
the stagnant fluid during the cell removal/collection can be
addressed (e.g., by flushing). In some embodiments, the one or more
transduction/transfection regions 210 and the one or more flushing
regions 230 may each be connected by a connection region 220.
[0023] In some embodiments, the transduction region 210, the
connection region 220, and the flushing region 230 together can
form a continuous channel. In some embodiments, the device 100 may
include one or more inlets/outlets disposed along the channel. The
device 100 may include one or more of the following: 1) a loading
inlet; 2) a collection outlet for the cells; 3) a flushing inlet;
4) a collection outlet for the excess cells/vectors (also referred
to as "excess collection outlet"); 5) among others; 6) or any
combination thereof. In some embodiments, the device 100 may
include at least two inlets/outlets: 1) a first inlet/outlet
configured to be loading inlet and a collection outlet (also
referred to as "loading inlet/collection outlet"); and 2) a second
inlet/outlet configured to be a flushing inlet and/or excess
collection outlet (also referred to as "flushing inlet/outlet").
For example, the device 100 may include at least a first
inlet/outlet disposed along transduction region(s) 210 and one or
more additional (second) inlets/outlets disposed along the
connection region(s) 220 and/or the flushing region(s) 230. In some
embodiments, the first inlet/outlet may be configured to be a
loading inlet and collection outlet and the additional inlet/outlet
may be configured to be a flushing inlet and/or excess collection
outlet. The device 100 may include any number of
inlets/outlets.
[0024] In some embodiments, at least the transduction region(s) 210
can be configured so that the cells form a monolayer for a
homogenous virus exposure. In some embodiments, the channels
disposed in the transduction region (s) 210 can also be configured
to provide a high surface area-to-volume ratio that can overcome
diffusion limitations of conventional systems.
[0025] In some embodiments, each transduction region 210 may
include a plurality of channel segments 212 and a plurality of
junction segments 214. The plurality of junction segments 214 may
be disposed between and fluidly connect two of the channel segments
212
[0026] In some embodiments, the channel segments 212 and junction
segments 214 may be disposed in a pattern. In some embodiments,
each channel segment 212 may be disposed to extend along the width
or the length of the body 110. In the example shown in FIG. 1, each
channel segments 212 may be disposed to extend along the width of
the body 110 between the first side 116 and the second side 118. In
other embodiments, each channel segment 212 may be disposed to
extend along the length of the body 110 between the first end 112
and the second end 114.
[0027] In some embodiments, each channel segment 212 may be a
straight segment that extends between sides/ends of the body 110
having a length (l.sub.c) as shown in FIGS. 1-2b. As shown in the
figures, the length (l.sub.c) of each channel segment 212 can
extends parallel to the width (W.sub.d) of the device body 110 but
will understood that the length (l.sub.c) of each channel segment
212 may extend parallel to the length (L.sub.d) of the body
110.
[0028] In the other embodiments, the one or more segments 212 may
have a different shape. For example, the one more segments 212 may
have a curved shape. In some embodiments, the one or more segments
212 may each have the same shape, for example, as shown in FIG. 1.
In other embodiments, the one or more segments 212 have different
shape.
[0029] In some embodiments, each junction segment 214 may have a
curved shape (e.g., rounded bend), for example, as shown in FIGS.
1-2b. For example, the each junction segment 214 may have an angle
bend (b.sub.c) and a channel gap (g.sub.c). As shown in the
figures, the angle bend may be about 180.degree.. In other
embodiments, the one or more junction segments 214 may have the
same and/or different shape, angle bend, channel gap, or any
combination thereof. For example, one or more junction segments 214
may have an angled, square-like shape.
[0030] In some embodiments, the transduction region 210 may include
any number of channel segments 212 and junction segments 214. By
way of example, the transduction region 210 may include more or
less channel segments 212 and junction segments 214 shown in the
figures.
[0031] In some embodiments, the device 100 may include an
inlet/outlet 202 disposed along transduction region(s) 210 and one
or more additional inlets/outlets disposed along the connection
region(s) 220 and/or the flushing region(s) 230. In some
embodiments, the first inlet/outlet may be configured to be a
loading/seeding inlet and collection outlet and the additional
inlets/outlets may be configured to be a flushing inlet and excess
collection outlet.
[0032] As shown in the figures, the device 100 may include an
inlet/outlet 202 disposed at a first end 213 of the transduction
region 210 and an inlet/outlet 204 between the connection region
220 and/or the flushing region 230. For example, the inlet/outlet
202 may be an inlet through which the cells and virus,
simultaneously and/or sequentially, can be loaded into the
processing portion 200; the cells can be collected/removed from the
channel after completing the transduction protocol; among others;
or any combination thereof. For example, the inlet/outlet 204 may
be (1) an inlet through which flushing fluid can be loaded and/or
(2) an outlet through which excess cells and/or vectors that have
been flushed away during transduction can be collected/removed
(e.g., excess collection outlet).
[0033] In some embodiments, a portion of the channel segment 212
(channel portion 211) disposed adjacent to the inlet/outlet 202 may
be tapered. The tapering of that portion 211 can prevent trapping
of the cells within that portion and direct the cells toward the
inlet/outlet 202 for collection.
[0034] In some embodiments, the channel segments 212 may be
disposed in a pattern so as not to extend past the same points with
respect to the body 110. For example, each of the channel segments
212 may be disposed so as extend between the same points disposed
with respect to the width/length of the device 110. In this way,
most of the channel segments 212 may be substantially the same
length. Although the segment 211 including the inlet/outlet 202 is
shown to be smaller in length (starts at a point between junction
segments), that segment 211 may be disposed to start at a point
close to the junction segment 214 so that can be substantially the
same length as the other segments 212. In other embodiments, the
channel segments 212 may be disposed so as to be offset (i.e., to
extend between different points with respect to the body 110).
[0035] In some embodiments, the flushing region 230 may include one
or more channel segments 232. The flushing region 230 may be
fluidly connected to the transduction region 210 by the connection
region 220 disposed between second end 215 and the flushing region
230. As shown in the figures, the flushing region 230 may be
fluidly connected to the transduction region 210 by the connection
region 220. In some embodiments, the connection region 220 may have
a bend angle of 90.degree.. In other embodiments, the connection
region 220 may have a different bend angle, shape, among other, or
a combination thereof.
[0036] In some embodiments, the device 100 may include additional
ports disposed on the channel segments of the flushing region 230.
For example, the device 100 may include an inlet/outlet 206. The
inlet/outlet 206 may be configured to be a secondary flushing
inlet/outlet. For example, the inlet/outlet 206 may be an outlet
through which the cells and/or vectors remaining after the first
flush and collection (via inlet/outlet 204) during transduction can
be collected/removed.
[0037] As shown in the figures, the segment 232 extends between the
inlet/outlets 204 and 206. It however will be understood that the
inlet/outlet 204 and/or 206 may be omitted. Additionally, the
segment 232 may include one or more additional inlets/outlets.
[0038] In some embodiments, as shown in the figures, the channel
segment 232 of the flushing region 230 may be a straight segment
that is disposed on the device 110 so as to extend perpendicular to
the channel segments 212 of the transduction region 210. In some
embodiments, the channel segment 232 may be disposed so as to
extend between the inlets/outlets 204 and 206.
[0039] In some embodiments, the channel segment 232 may be disposed
in different configurations with respect to the connection region
220 and/or the transduction region 210. For example, the channel
segment 232 may be disposed parallel to channel segment 212.
[0040] In some embodiments, the device 100 may include one or more
flushing regions disposed at different locations with respect to
the device body 110 in addition to or in alternative to the region
230 shown in FIGS. 1-2B. For example, the one or more flushing
regions may be disposed adjacent on either side of the transduction
region 210 so as to extend adjacent to the junction segments 214,
be disposed within the transduction region, for example, between
the channel segments 212 and junction segments 214, among others,
or a combination thereof.
[0041] In some embodiments, the channel segment 232 may include one
or more split portions 240 in which the segment 232 is separated by
one or more splitting member 246 so that the channel segment 232
divides or splits into multiple channels. As shown in the Figure,
the segment 232 may separate into two separate channels 242 and 244
along the portion 240.
[0042] In some embodiments, the flushing region(s) 230 may include
additional dividing members along the length of the channel
segment, additional dividing members 246 along the length and/or
within a dividing portion, among others, or any combination
thereof. By including the transfusion region 230 with split
portion(s) 240, fluid can better align along the sides so that
flushing of the cells from the channel can be maximized.
[0043] As shown in the figures, the transduction region 210, the
connection region 220 and the flushing region 230 together can form
a continuous channel disposed between two inlet/outlet ports in the
device 100. As shown in the figures, the transduction region 210,
the connection region 220, and the flushing region 230 together can
form a continuous channel disposed between the inlets/outlets 202
and 206 in the device 100. In the figures, the connection region
220, and the flushing region 230 can be considered to be downstream
of the transduction region 210. The inlet/outlet 202 can be
considered the loading inlet and the inlets/outlets 204 and 206 can
therefore be considered to be disposed on the channel downstream of
the inlet/outlet 202.
[0044] In some embodiments, the device 100 may include more than
one continuous channel disposed between inlets/outlets of the
device 100. For example, the device 100 may include additional
continuous channel(s) disposed between inlets/outlets having
additional transduction region(s), connection region(s), and
flushing region(s).
[0045] In some embodiments, the device 100 may include any number
of transduction regions 210, connection regions 220, and flushing
regions 230. Although the device 100 is shown as having one
transduction region 210, one connection region 220, and one
flushing region 230, it will be understood that the device may
include more than one transduction region 210, connection region
220, and flushing region 230. For example, the device may include
an additional flushing region 230 and connection region 220
disposed adjacent to and/or within the transduction region 210.
[0046] FIG. 3 shows an example of a cross-section of the continuous
channel disposed in the processing section 200 (i.e., the
continuous channel that extends through the transduction,
connection, and flushing regions). It will be understood that the
cross-section does not correspond to the split portion 240 but the
entire split portion 240 (e.g., 242, 244 and 246) may have the same
dimensions of the cross-section. In some embodiments, the
continuous channel disposed in the processing section 200 may have
a height h.sub.c that is within the range of about 50-100 .mu.m
and/or a width w.sub.c that is within the range of about 3000-5000
.mu.m. In some embodiments, the height and/or width may be greater
than those ranges, less than those ranges, among others, or a
combination thereof.
[0047] In some embodiments, for processing a cell number of about
1,000,000-4,000,000, the channel may have aspect ratios between
height to width between 1:10 and 1:90. In some embodiments, the
channel may have a height between about 50-250 .mu.m. The width may
be between 20-90.times. greater than the height. For example, the
width may be between about 1000-5000 .mu.m. In some embodiments,
the total surface area of the transduction region may be between
about 9.5-15 cm.sup.2.
[0048] In some embodiments, for processing a cell number of
10.sup.7-10.sup.8 cells, the channel may have aspect ratios between
height to width between 1:10 and 1:100. In some embodiments, the
channel may have a height between about 50-250 .mu.m. The width may
be between 20-100.times. greater than the height. In some
embodiments, total surface area of the transduction region may be
between 50-500 cm.sup.2. In some embodiments, the total surface
area for processing 10.sup.7 cells should be about 50 cm.sup.2 for
processing 10.sup.8 cells should be about 500 cm.sup.2.
[0049] The channel geometry/dimensions can depend on material and
manufacturing process. For example, the height of the channel may
be smaller than 150 .mu.m (e.g., about 96 .mu.m) if manufactured
using Photolithography, and larger than 200 .mu.m (e.g., about 210
.mu.m) if manufactured using CNC Milling. The channel
dimensions/geometry of the channel according to embodiments provide
a more efficient transduction. More specifically, the channel
dimensions/geometry can address the issues with loading the
cells/vectors due to the large surface area and aspect ratio of the
channels by properly constraining the fluid in the channels. To
have a large surface area, narrow channels need to be longer in
length, which can significantly increase fluidic resistance thereby
impeding cell loading. Conversely, shorter wide channels can be
prone to collapsing due to extremely high aspect ratio, thereby
requiring internal supports that can increase fabrication
complexity for methods, such as xurography and disturb flow
patterns for non-static transductions, thereby reducing cell
recovery. Furthermore, air pockets can easily form in large
channels that would make uniform loading difficult.
[0050] FIGS. 4A and 4B show examples of failed channel geometry.
FIG. 4A shows channel designs (i)-(iv) having the same height but
with varying widths. Channel design 4A(iv) has the same width as
4(A)(ii). As shown in FIG. 4B(i)-(iv), these designs generally fail
because they collapse and incomplete fill due to having such a high
aspect ratio. For example, FIG. 4B(iii) shows a failure example
showing areas where the loading might not be uniform due to air
bubbles and the center would collapse due to the high aspect ratio
and FIG. 4B(v) is an example of the cross-section of examples 4A/B
(i) and (iii) or of a general channel collapse in which the top
surface will either sag slightly or make contact with the bottom
surface. FIG. 4C shows a legend for FIGS. 4(B)(i)-(v).
[0051] FIG. 5 shows a graph of fluidic resistance using
hypothetical, different channel designs having different heights
and widths. The hypothetical baseline design had a 3000 um in width
and 1000 um in height. This graph shows how the fluidic resistance
can increase with respect to the baseline (the large open
minimalistic "channels") for fold differences in either height or
channel width. For example, a 10-fold decrease in height increases
the fluidic resistance nearly 8-fold from baseline compared to if
the width was decreased by 10-fold from baseline. Therefore, to
address the potential fluidic resistance in the channel, the width
of the channel should be proportionally greater than height.
[0052] In some embodiments, the device 100 may include a coating
entirely or partially along the channel within the processing
section 200. For example, the coating may a removable cell
adhesive. The coating may include but is not limited to
RetroNectin.RTM., other polymers such as poly-L-lysine, cell
adhesives such as CellTak, among others, or any combination
thereof. In some embodiments, the coating may be disposed along the
channel within the transduction region 210. In other embodiments,
the coating may also be disposed along the channel disposed within
the connection region 220 and/or the flushing region 230.
[0053] In some embodiments, the device 100 may include one or more
access ports 120 disposed on the body 110 that fluidly communicate
with the one or more inlets/outlets (e.g., 202, 204, 206) and
channel regions (e.g., 210, 220, 230) of the device 100 and that
can be configured to connect or communicate with one or more
external systems/devices (e.g., to perform the transduction using
the device 100). In some embodiments, the device may include an
access port for each inlet/outlet.
[0054] In some embodiments, the access ports 120 may be disposed on
one or more side of the device 100. As shown in FIG. 1, the access
ports 120 may be disposed along first end 112. In some embodiments,
the access ports 120 may be disposed on other side of the device
100. In some embodiments, the access ports 120 may be disposed on a
different end/side of the device 100. For example, the access ports
120 may be disposed on the device to correspond to the location of
the inlets/outlets (e.g., 202, 204, and 206).
[0055] In some embodiments, one or more access ports 120 may
include an adapter configured to connect that access port and
inlet/outlet to an external system/device, tubing, etc. The adapter
may include a luer lock device, a Barbed device, septum seal
device, among others, or any combination thereof. In some
embodiments, the one or more adapters and/or access ports may be
integrated into the device 100, for example, if the device has a
bag-like form.
[0056] In some embodiments, the one or more access ports 120 may
include access port 122 disposed to communicate with the
inlet/outlet 202, an access port 124 disposed to communicate with
the inlet/outlet 204, and access port 126 disposed to communicate
with the inlet/outlet 206.
[0057] In some embodiments, the one or more access ports 120 and/or
the inlets/outlets 202, 204, and/or 206 may be in a closed position
as the default configuration. The one or more access ports 120
and/or the inlets/outlets 202, 204, 206 may be configured to open
(e.g., using an adapter and/or other mechanism) to allow fluid
through when one or more external devices are attached. For
example, the device 100 may include a septum seal at the access
ports and/or the inlets/outlets 202, 204, and 206.
[0058] In some embodiments, the one or more access ports 120 and/or
the inlet/outlets 202, 204, and/or 206 may be in an open position
as the default configuration. In some embodiments, the device 100
may include one or more locking members (e.g., stoppers) to close
those ports and/or inlets/outlets.
[0059] As mentioned above, the device 100 may be in a form of an
encased plate device, a bag-like device, a flask-like device among
others, or a combination thereof. The device 100 may be
manufactured of a sterilizable material using any known
manufacturing processes. The sterilizable material may include but
is not limited to silicone elastomer (e.g., polydimethylsiloxane
(PDMS)), thermoplastics (e.g., such as polystyrene and
polymethylmethacrylate), polystyrene, silicon, or glass. For
example, for an encased plate device, the device may be
manufactured using photolithographic methods, molding methods
(e.g., using curing on a master mold, which can be manufactured,
for example, using computer numerical controlled (CNC)
micro-milling), xurography, among others, or a combination thereof.
For example, for the bag-like device, the channels may be formed
using hot embossing process, xurography, injection molding, among
others, or a combination thereof.
[0060] In some embodiments, the device 100 may be configured to be
used with any known devices and/or systems capable of performing
static and flow transduction protocols. For example, the systems
may be an automated or semi-automated system capable of performing
cell isolation, expansion, transduction, among others, or a
combination thereof. The systems may include any apheresis machines
and/or systems. The systems may include but are not limited to
CliniMACS Prodigy or CliniMACS Plus (Miltenyi Biotec), COBE cell
processor (Terumo BCT) Xuri cell expansion system (GE Healthcare),
among others, or any combination thereof.
[0061] In some embodiments, the device 100 may be configured to be
used with systems and/or devices under a static transduction and/or
flow transduction protocol. Static transduction protocol may refer
to any protocol in which the target cells and virus are single
loaded. Flow transduction protocol may refer to any protocol in
which the virus are continuously perfused after the cells are
loaded into the device and can be immobilized in the coating
provided on the device and/or reagent added to the device before
loading (e.g., RetroNectin.RTM.). For example, flow transduction
protocols may include but are not limited to constant perfusion,
recirculating perfusion, and/or low-dose consecutive perfusions,
among others, or a combination thereof. For example, for a constant
perfusion protocol, after the cells can be substantially
immobilized within the transduction region, viral vectors may be
constantly perfused through device for entire transduction
duration. For a recirculating perfusion protocol, for example,
after the cells can be substantially immobilized within the
transduction region viral vectors may be recirculated through the
device, for example, using a peristaltic pump.
[0062] For example, for low dose consecutive perfusion, after the
cells can be substantially immobilized within the transduction
region, viral vectors can be loaded and allowed to incubate under
static conditions. After a shortened transduction time where most
of the virus should have adsorbed onto the cells, a fresh stock of
viral vectors can be loaded into the device to replenish the cells
with virus and media. This can be done as many times as necessary
to achieve the desired virus exposure or transduction time. By
performing the consecutive transductions in static, potential
issues of heterogeneity can be avoided
[0063] It is also understood that the devices according to be
embodiments can exist alone or may be a part of a system which, for
example and without limitation, can include: pumps for introducing
fluids, e.g., samples, reagents, buffers and the like, into the
system and/or through the system; detection equipment or systems;
data storage systems; and control systems for controlling fluid
transport and/or direction within the device, monitoring and
controlling environmental conditions to which fluids in the device
are subjected, e.g., temperature, current and the like; systems
capable of performing transduction/transfection protocols
(including those provided above); among others; or any combination
thereof.
[0064] FIG. 6 shows an exemplary method 600 of using a device
according to embodiments to transduce cells. In some embodiments,
the method 600 may be performed automatically and/or
semi-automatically by one or more external device and/or system
and/or manually using external devices and/or systems. The methods
are described with respect to the device 100 but will be understood
that the method may be performed using devices according to other
embodiments.
[0065] In some embodiments, the method 600 may include a step 610
of (1) opening at least the first inlet/outlet disposed at the
first end of the transduction region 210 and (2) closing a flushing
inlet/excess collection outlet disposed downstream. By way of
example, if the device includes more than 2 flushing inlets/excess
collection outlets, the step 610 may including 1) opening, if
necessary, the loading inlet/collection outlet (202) and at least
one of the flushing inlets/excess collection outlets downstream
(204) and 2) closing one or more of the flushing inlet/excess
outlets downstream from the opened flushing inlet(s)/excess
collection outlet(s) (e.g., inlet/outlet 206).
[0066] After the inlets/outlets (e.g., 202 and 204) are open for
fluid communication and one or more downstream flushing
inlet(s)/excess collection outlet (s) are closed, the method 600
may include step 620 of loading the target cells and viral vectors
through the first inlet/outlet (e.g., 202) according to the
transduction protocol. For example, for static transduction, the
target cells and viral vectors may be simultaneously loaded into
the device 100 through the first inlet/outlet (e.g., 202) using a
device (e.g., syringe, pump etc.) for static transduction
protocols. For example, for flow transduction protocols, the target
cells may be loaded into the channel (e.g., transduction region
210) through the first inlet/outlet (e.g., 202) and incubated
within the device 100 for a period for time so that the target
cells are immobilized in the channel (e.g., immobilized by the
coating agent (RetroNectin.RTM.)). After the incubation period, the
viral vectors may be loaded into the channel (e.g., transduction
region 210) through the first inlet/outlet (e.g., 202) by a device
(e.g., syringe, pump, etc.) using the flow transduction protocol
(e.g., constant, recirculating, low dose consecutive transduction,
among others, or any combination thereof). During the loading step,
the one of the flushing inlet/excess collection outlet (e.g., 204)
can collect the excess cells and/or viral vectors that move past
the transduction region 210.
[0067] Next, after the viral vectors and target cells are loaded
into the device 100 for the desired transduction time in an
incubator, the method 600 may include a step 630 of delivering a
flushing solution using a device (e.g., syringe and/or pump)
through one or more of the opened flushing inlet/excess collection
outlet (e.g., 204). The flushing solution may be any solution, for
example, a buffer solution such as Phosphate-buffered saline (PBS).
The flushing solution can cause the cells to move to first
inlet/outlet (202) for collection. Before this step, a collection
chamber (e.g., collection bag) may be connected to the inlet/outlet
202 to collect the cells that are flushed.
[0068] After the device 100 is flushed with a flushing solution via
each opened flushing inlet/excess collection outlet (e.g., 204),
the method 600 may include a step 640 of closing one or more of the
opened flushing inlets/excess collection outlets (e.g., 204) and
opening one or more flushing inlets/excess collection outlets (206)
that are downstream of the flushing inlet(s)/excess collection
outlet(s) (204) used in steps 610-630. The one or more flushing
inlets/excess collection outlets may be different and/or the same
from those opened in step 610.
[0069] After which, the method 600 may include a step 650 of
delivering a flushing solution through one or more of the opened
flushing inlets/excess collection outlets (e.g., 206). The flushing
solution may be the same solution (e.g., PBS) as step 530 or a
different solution. Due to the one or more split portions 240 of
the segment 232 in the flushing region 230 and the laminar flow
imposed by the channel dimensions, the fluid flushed through the
inlet/outlet 206 can be directed along the sides of the channel
(left and right walls from the top view displayed in all drawings)
at these slower/stagnant fluid regions to maximize cell recovery
after transduction.
[0070] In some embodiments, steps 630-650 may be repeated, for
example, for when the device includes additional flushing
inlet(s)/outlet(s) and/or flushing regions 230. In some
embodiments, the method 600 may also performed each processing
section disposed on the device.
[0071] It will be understood that the transduced cells can be
collected via inlet/outlet 202 after steps 520-550 (i.e., after the
cells and viral vectors are loaded into the device for the desired
transduction time).
[0072] The above method may be modified based on the default
configuration of the device. For example, if the one or more of the
inlets/outlets are in a closed position, as a default, than the
steps associated with closing those inlets/outlets may be omitted.
Alternatively, if one or more of the inlets/outlets are in an open
position, as a default, than the steps associated with opening
those inlets/outlets may be omitted.
[0073] The disclosed devices and transduction methods can enable
significant reduction in viral vector requirements by leveraging
the channel geometry to overcome diffusion limitations of current
systems. Moreover, the high surface area-to-volume ratio of the
channel geometry can efficiently bring the viral vector into cell
contact before degradation occurs, thereby reducing transduction
times while minimizing viral vector waste and total amounts used by
enabling large quantities of cells to be exposed to sufficient
vector concentrations.
[0074] While the disclosure has been described in detail with
reference to exemplary embodiments, those skilled in the art will
appreciate that various modifications and substitutions may be made
thereto without departing from the spirit and scope of the
disclosure as set forth in the appended claims. For example,
elements and/or features of different exemplary embodiments may be
combined with each other and/or substituted for each other within
the scope of this disclosure and appended claims.
* * * * *