U.S. patent application number 15/094471 was filed with the patent office on 2016-11-03 for antigen binding polypeptides.
The applicant listed for this patent is ARGEN-X B.V.. Invention is credited to Christophe Frederic Jerome Blanchetot, Johannes Joseph Wilhelmus De Haard, Torsten Dreier.
Application Number | 20160319040 15/094471 |
Document ID | / |
Family ID | 43381020 |
Filed Date | 2016-11-03 |
United States Patent
Application |
20160319040 |
Kind Code |
A1 |
Dreier; Torsten ; et
al. |
November 3, 2016 |
ANTIGEN BINDING POLYPEPTIDES
Abstract
The invention relates to a platform technology for production of
antigen binding polypeptides having specificity for a desired
target antigen which is based on the conventional antibody
repertoire of species in the family Camelidae, and to antigen
binding polypeptides obtained using this technology platform. In
particular, the invention provides an antigen binding polypeptide
comprising a VH domain and a VL domain, wherein at least one
hypervariable loop or complementarity determining region (CDR) in
the VH domain or the VL domain is obtained from a VH or VL domain
of a species in the family Camelidae.
Inventors: |
Dreier; Torsten; (Sint
Martens Letem, BE) ; Blanchetot; Christophe Frederic
Jerome; (Gouda, NL) ; De Haard; Johannes Joseph
Wilhelmus; (Oudelande, NL) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
ARGEN-X B.V. |
Zwijnaarde |
|
BE |
|
|
Family ID: |
43381020 |
Appl. No.: |
15/094471 |
Filed: |
April 8, 2016 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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13233345 |
Sep 15, 2011 |
9428580 |
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15094471 |
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12497239 |
Jul 2, 2009 |
8444976 |
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13233345 |
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61077730 |
Jul 2, 2008 |
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61110161 |
Oct 31, 2008 |
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Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C07K 2317/55 20130101;
C07K 2317/24 20130101; C07K 2317/76 20130101; C07K 16/2866
20130101; C07K 16/245 20130101; C12P 21/00 20130101; C07K 2317/56
20130101; A61P 43/00 20180101; C07K 2317/22 20130101; C07K 16/462
20130101; C12Q 2600/158 20130101; C12Q 1/6883 20130101 |
International
Class: |
C07K 16/46 20060101
C07K016/46; C07K 16/24 20060101 C07K016/24 |
Foreign Application Data
Date |
Code |
Application Number |
Jul 2, 2008 |
GB |
0812120.4 |
Claims
1. An antigen binding polypeptide comprising a VH domain and a VL
domain, wherein at least one hypervariable loop or complementarity
determining region (CDR) in the VH domain or the VL domain is
obtained from a VH or VL domain of a species in the family
Camelidae.
2-7. (canceled)
8. The antigen binding polypeptide of claim 1 which contains at
least one amino acid substitution in at least one hypervariable
loop or complementarity determining region of either the VH domain
or the VL domain in comparison to a Camelidae VH or VL domain
obtained by active immunisation of a species in the family
Camelidae, or in comparison to a VH or VL domain encoded by a VH or
VL gene of a species in the family Camelidae.
9. The antigen binding polypeptide of claim 1 which contains at
least one amino acid substitution in at least one framework region
of either the VH domain or the VL domain, in comparison to a
Camelidae VH or VL domain obtained by active immunisation of a
species in the family Camelidae or in comparison to a VH or VL
domain encoded by a VH or VL gene of a species in the family
Camelidae.
10. (canceled)
11. (canceled)
12. The antigen binding polypeptide of claim 1 comprising a VH
domain, wherein the VH domain exhibits a sequence identity of 80%
or greater with one or more human VH domains across the framework
regions FR1, FR2, FR3 and FR4.
13. The antigen binding polypeptide of claim 12 wherein the VH
domain exhibits a sequence identity of 90% or greater with one or
more human VH domains across the framework regions FR1, FR2, FR3
and FR4.
14. (canceled)
15. (canceled)
16. The antigen binding polypeptide of claim 1 comprising a VL
domain, wherein the VL domain exhibits a sequence identity of 80%
or greater with one or more human VL domains across the framework
regions FR1, FR2, FR3 and FR4.
17. The antigen binding polypeptide of claim 16 wherein the VL
domain exhibits a sequence identity of 90% or greater with one or
more human VL domains across the framework regions FR1, FR2, FR3
and FR4.
18-31. (canceled)
32. The antigen binding polypeptide of claim 1 which is
immunoreactive with a non-camelid target antigen.
33. The antigen binding polypeptide of claim 32 wherein the
non-camelid target antigen is a human antigen.
34. (canceled)
35. The antigen binding polypeptide of claim 32, wherein the
non-camelid target antigen is a target of therapeutic or diagnostic
importance.
36. The antigen binding polypeptide of claim 1 which comprises at
least one constant domain having an amino acid sequence which is
encoded by a human immunoglobulin gene, or an amino acid sequence
at least 90% identical thereto.
37. The antigen binding polypeptide of claim 1 which is an Fab,
Fab', F(ab').sub.2, bi-specific Fab', Fv fragments, diabody, linear
antibody, a single chain variable fragment (scFv), antibody or
multispecific antibody formed from antibody fragments.
38. A chimeric antigen binding polypeptide comprising a VH domain
and a VL domain, wherein at least one hypervariable loop or
complementarity determining region (CDR) in the VH domain or the VL
domain is obtained from a VH or VL domain of a species in the
family Camelidae.
39. The chimeric antigen binding polypeptide of claim 38, wherein
said chimeric antigen binding polypeptide is recombinantly
expressed.
40. The chimeric antigen binding polypeptide of claim 38, wherein
said chimeric antigen binding polypeptide is a monoclonal
antibody.
41. An antigen binding polypeptide comprising a VH domain and a VL
domain, wherein at least one hypervariable loop or complementarity
determining region (CDR) in the VH domain or the VL domain is
obtained from a VH or VL domain of a species in the family
Camelidae and wherein said antigen binding polypeptide is
immunoreactive with a target antigen of therapeutic or diagnostic
importance.
42. A chimeric antigen binding polypeptide comprising or consisting
of a VH domain of a conventional antibody of Llama (Llama glama) or
alpaca (Llama pacos) and a VL domain of a conventional antibody of
Llama (Llama glama) or alpaca (Llama pacos) and one or more
constant domains of a human antibody.
43. The chimeric antigen binding polypeptide of claim 42, wherein
said chimeric antigen binding polypeptide is an antigen binding
polypeptide immunoreactive with a target antigen of therapeutic or
diagnostic importance, which antigen binding polypeptide comprises
or consists of a VH domain of a conventional antibody of Llama
(Llama glama) or alpaca (Llama pacos), a VL domain of a
conventional antibody of Llama (Llama glama) or alpaca (Llama
pacos) and one or more constant domains of a human antibody.
44. The chimeric antigen binding polypeptide of claim 42, wherein
said chimeric antigen binding polypeptide is a chimeric antibody
comprising or consisting of a VH domain of a conventional antibody
of Llama (Llama glama) or alpaca (Llama pacos), a VL domain of a
conventional antibody of Llama (Llama glama) or alpaca (Llama
pacos) and the constant domains of a human antibody of an isotype
selected from the group consisting of: IgG, IgM, IgD, IgE and
IgA.
45. The chimeric antigen binding polypeptide of claim 42, wherein
said chimeric antigen binding polypeptide is an antigen binding
polypeptide immunoreactive with a target antigen of therapeutic or
diagnostic importance, which antigen binding polypeptide comprises
or consists of a VH domain of a conventional antibody of Llama
(Llama glama) or alpaca (Llama pacos), a VL domain of a
conventional antibody of Llama (Llama glama) or alpaca (Llama
pacos) and the constant domains of a human antibody of an isotype
selected from the group consisting of: IgG, IgM, IgD, IgE, IgA.
46-93. (canceled)
Description
RELATED APPLICATIONS
[0001] This application is a Divisional of U.S. patent application
Ser. No. 12/497,239, filed Jul. 2, 2009 which claims the benefit of
priority of U.S. Provisional Application Ser. No. 61/077,730, filed
Jul. 2, 2008, and U.S. Provisional Application Ser. No. 61/110,161,
filed Oct. 31, 2008, which is incorporated herein by reference.
This application also claims the benefit of foreign priority to GB
0812120.4, filed Jul. 2, 2008, which is incorporated herein by
reference.
FIELD OF THE INVENTION
[0002] The invention relates to a novel platform for generation of
antigen binding polypeptides, including monoclonal antibodies,
which share a high degree of sequence and structural homology with
the variable domains of human antibodies.
BACKGROUND TO THE INVENTION
[0003] Monoclonal antibodies have many applications as research
tools and, increasingly, as therapeutic or diagnostic agents.
Currently more than 20 different monoclonal antibodies have
received regulatory approval to treat a variety of different
diseases, including cancer, inflammation, auto-immune disorders,
infectious disease, asthma, cardiovascular diseases and transplant
rejection and the number of monoclonal antibody drugs in the
development pipeline is increasing year-on-year.
[0004] The utility of rodent (specifically murine) monoclonal
antibodies in human therapy is limited because of problems
associated with their non-human origin, in particular their
immunogenicity in a human host. In order to minimize the human
immune response against therapeutic antibody drugs, monoclonal
antibody technology has evolved from full mouse antibodies to
chimeric antibodies (mouse variable domains grafted on a human IgG
backbone), to humanized antibodies (mouse CDRs grafted on a human
IgG backbone), to "fully human" antibodies derived from synthetic
libraries or immunized transgenic mice expressing part of the human
IgG repertoire.
[0005] A number of technology platforms have been developed which
allow production of fully human or "humanized" monoclonal
antibodies against target antigens of therapeutic interest. Each of
these platforms has its own particular characteristics and
potential shortcomings.
[0006] Humanisation of mouse monoclonal antibodies was initially
achieved by combining mouse variable domains with human constant
domains, creating so called chimeric antibodies having about 70% of
human content. A further degree of humanization was subsequently
achieved by grafting the complementarity-determining regions (CDRs)
of mouse monoclonal antibodies onto human framework regions of the
variable antibody domains of human antibodies. In addition, several
amino acid residues present in those framework regions were
identified as interacting with the CDRs or antigen and were back
mutated in the humanized antibody to improve binding. (Almagro et
al. Frontiers in Bioscience. 13: 1619-1633 (2008)). Monoclonal
antibodies engineered using this approach have a relatively high
degree of primary sequence homology to human VH and VL domain
sequences after humanisation, but a drawback is the possibility of
ending up with hypervariable loops not having human-like structure,
because not all mouse-encoded CDRs use canonical folds, and
canonical fold combinations, which are not found in human
antibodies (Almagro et al., Mol. Immunol. 34:1199-1214 (1997);
Almagro et al., Immunogen. 47:355-63 (1998)). A further drawback is
the large number of mutations typically required to humanise such
antibodies (the procedure for which is complex and time-consuming),
with the consequent risk of losing affinity and potency as a result
of the number of changes needed for humanisation and, the fact that
VKappa domains are mainly used in the murine repertoire, whereas
approximately half of all human antibodies possess VLambda
domains.
[0007] As a potential improvement on humanised mouse monoclonal
antibodies, "fully human" monoclonal antibodies can be produced by
two very different approaches. The first approach is selection from
a fully synthetic human combinatorial antibody library (for example
HuCAL.RTM., MorphoSys). The potential drawback of this approach is
that the synthetic library only approximates the functional
diversity naturally present in the human germline, thus the
diversity is somewhat limited. Also, antibodies generated using
this approach are not derived from in vivo selection of CDRs via
active immunisation, and typically affinity maturation has to be
done in order to improve affinity for the target antigen. Affinity
maturation is a lengthy process which may add considerable time to
the antibody discovery process. Also, in the process of affinity
maturation certain amino acid residues may be changed which may
negatively affect the binding specificity or stability of the
resulting antibody (Wu et al., J. Mol. Biol. 368: 652-65
(2007)).
[0008] Alternative "fully human" platforms are based on transgenic
mice which have been engineered to replace the murine
immunoglobulin encoding region with antibody-encoding sequences
from the human germline (for example HuMab, Medarex). These systems
have the advantage that antibodies are raised by active
immunisation, with the target antigen, i.e. they have a high
starting affinity for the antigen, and that no or only minimal
antibody engineering of the original antibodies is required in
order to make them more human-like. However, the transgenic mouse
strains are by definition highly inbred and this has adverse
consequences for the strength and diversity of the antibody
response. Another drawback with this platform may be impaired B
cell maturation due to human Fc/mouse Fc receptor interaction in
some transgenic mouse systems.
[0009] A further platform is based on immunisation of non-human
primates, specifically cynomologous monkeys. Due to the high degree
of amino acid sequence identity between monkey and human
immunoglobulins it is postulated that antibodies raised in monkeys
will require little or no additional "humanisation" in the variable
domains in order to render them useful as human therapeutics (see
WO 93/02108).
SUMMARY OF THE INVENTION
[0010] The present inventors have recognised the need for a
"humanised" monoclonal antibody (antigen binding polypeptide)
platform which avoids some or all of the shortcomings they have
observed with prior art humanised or fully human antibody platforms
and which enables the production of antibodies of high specificity
and affinity against a broad range of target antigens of
therapeutic importance whilst minimising immunogenicity in a human
host.
[0011] The present inventors have observed that both the VH and the
VL domains of conventional antibodies from the family Camelidae
exhibit a high degree of amino acid sequence identity with the VH
and VL domains of human antibodies over the framework regions. In
fact, the degree of sequence identity between camelid conventional
VH domains and human VH domains, and between camelid conventional
VL domains and human VL domains can approach that observed between
humans and other primate species, e.g. cynomologous monkeys, and is
much higher than might be expected given the phylogenetic distance
between humans and camelids. This finding is surprising given that
the variable domains of heavy-chain camelid antibodies (VHH) do not
show this high degree of sequence homology with human variable
domains.
[0012] In addition, the inventors have observed that the
hypervariable loops (H1, H2, L1, L2 and L3) of camelid VH and VL
domains often exhibit a high degree of structural homology with the
hypervariable loops of human VH and VL domains, which is again
unexpected given the evolutionary distance between humans and
camelids. The high degree of structural homology between camelid
conventional antibodies (or rather the hypervariable loops of such
antibodies) and human antibodies is also surprising since the
hypervariable loops of heavy-chain camelid antibodies have been
reported to vary substantially in conformation and length from the
corresponding loops in human and mouse VH (see review De Genst et
al., Develop Comp. Immunol. 30:187-98 (2006)).
[0013] The high degree of primary amino acid sequence homology with
the framework regions of human antibodies, coupled with the high
degree of structural homology of the antigen binding sites
comprising the hypervariable loops with the binding sites of human
antibodies, plus the fact that Camelidae conventional antibodies
can be raised by active immunisation of an outbred animal
population, which are phylogenetically quite distant from humans,
has led the present inventors to surmise that conventional
antibodies from the family Camelidae are an attractive starting
point for engineering monoclonal antibodies having potential
utility as human therapeutics.
[0014] Therefore, in accordance with a first aspect of the
invention there is provided an antigen binding polypeptide
comprising a VH domain and a VL domain, wherein at least one
hypervariable loop or complementarity determining region (CDR) in
the VH domain or the VL domain is obtained from a VH or VL domain
of a species in the family Camelidae.
[0015] In one embodiment the antigen binding polypeptide of the
invention may be immunoreactive with a target antigen. In another
embodiment the antigen binding polypeptide may bind specifically to
a target antigen.
[0016] In a non-limiting embodiment the antigen binding polypeptide
of the invention may be a recombinant polypeptide.
[0017] In a non-limiting embodiment the antigen binding polypeptide
of the invention may be a chimeric polypeptide.
[0018] In a non-limiting embodiment the antigen binding polypeptide
of the invention may be a monoclonal antibody.
[0019] In a non-limiting embodiment the antigen binding polypeptide
of the invention may be a recombinantly expressed chimeric
monoclonal antibody.
[0020] In a non-limiting embodiment the antigen binding polypeptide
according to the invention may comprise hypervariable loops or
complementarity determining regions which have been obtained by
active immunisation of a species in the family Camelidae.
[0021] In a second aspect the invention provides a process for
preparing an antigen binding polypeptide immunoreactive with a
target antigen, said process comprising: [0022] (a) determining the
nucleotide sequence encoding at least one hypervariable loop or
complementarity determining region (CDR) of the VH and/or the VL
domain of a Camelidae conventional antibody immunoreactive with
said target antigen; and [0023] (b) expressing an antigen binding
polypeptide immunoreactive with said target antigen, said antigen
binding polypeptide comprising a VH and a VL domain, wherein at
least one hypervariable loop or complementarity determining region
(CDR) of the VH domain or the VL domain has an amino acid sequence
encoded by the nucleotide sequence determined in part (a).
[0024] In a third aspect the invention provides a process for
preparing a recombinant antigen binding polypeptide that is
immunoreactive with (or specifically binds to) a target antigen,
said antigen binding polypeptide comprising a VH domain and a VL
domain, wherein at least one hypervariable loop or complementarity
determining region (CDR) in the VH domain or the VL domain is
obtained from a species in the family Camelidae, said process
comprising the steps of: [0025] (a) isolating Camelidae nucleic
acid encoding at least one hypervariable loop or complementarity
determining region (CDR) of the VH and/or the VL domain of a
Camelidae conventional antibody immunoreactive with said target
antigen; [0026] (b) preparing a polynucleotide comprising a
nucleotide sequence encoding hypervariable loop(s) or
complementarity determining region(s) having amino acid sequence
identical to the hypervariable loop(s) or complementarity
determining region(s) encoded by the nucleic acid isolated in step
(a), which polynucleotide encodes an antigen binding polypeptide
comprising a VH domain and a VL domain that is immunoreactive with
(or specifically binds to) said target antigen; and [0027] (c)
expressing said antigen binding polypeptide from the recombinant
polynucleotide of step (b).
[0028] The polynucleotide prepared in step (b) is preferably
recombinant.
[0029] The invention further provides a polynucleotide comprising a
nucleotide sequence which encodes an antigen binding polypeptide
according to the first aspect of the invention, or which encodes a
fragment of said antigen binding polypeptide, which fragment
comprises at least one hypervariable loop or complementarity
determining region (CDR) obtained from a VH or VL domain of a
species in the family Camelidae.
[0030] The invention also provides an expression vector comprising
the polynucleotide defined above operably linked to regulatory
sequences which permit expression of the antigen binding
polypeptide in a host cell or cell-free expression system, a host
cell or cell-free expression system containing the expression
vector, and a method of producing a recombinant antigen binding
polypeptide which comprises culturing the host cell or cell free
expression system under conditions which permit expression of the
antigen binding polypeptide and recovering the expressed antigen
binding polypeptide.
[0031] Still further, the invention provides a test kit comprising
an antigen binding polypeptide according to the first aspect of the
invention and a pharmaceutical formulation comprising an antigen
binding polypeptide according to the first aspect of the invention
and at least one pharmaceutically acceptable diluent, excipient or
carrier.
BRIEF DESCRIPTION OF THE DRAWINGS
[0032] FIG. 1--shows the results of an ELISA in which sera from
llamas immunised with IL1-Beta were tested for the presence of
antibodies against IL1-Beta, on day 0 and day 28 following
immunisation.
[0033] FIG. 2--illustrates the amino acid sequences (SEQ ID NOS:
21, 255-268, respectively) of "humanized" variants of two Fabs
immunoreactive with IL-1Beta, coded 1E2 and 1F2. Based on the
alignment against the closest human germlines, mutations in the VH
and V.lamda. framework regions of 1E2 and 1F2 were proposed.
Besides the fully humanized (hum) and the wild type (wt) V regions,
also a "safe variant" with only three wild type residues remaining
was proposed (safe).
[0034] FIG. 3--shows the results of an ELISA in which recombinantly
expressed Fabs were tested for their ability to bind biot-IL-1Beta.
For this the Fabs were captured on an anti-myc coated Maxisorp
plate. Biotinylated human IL-1Beta was added and bound cytokine was
detected using HRP-conjugated streptavidin.
[0035] FIG. 4--shows the results of phage ELISA in which phage
displaying humanized variants of Fabs 1E2 and 1F2 were tested for
binding to IL-1Beta.
[0036] FIG. 5--shows the results of ELISA in which chimeric 1E2 was
tested for binding to IL-1Beta.
DETAILED DESCRIPTION OF THE INVENTION
[0037] The invention relates to a new platform technology for
production of antigen binding polypeptides having specificity for a
desired target antigen which is based on the conventional antibody
repertoire of species in the family Camelidae, and to antigen
binding polypeptides obtained using this technology platform.
[0038] Thus, in a first aspect the invention provides an antigen
binding polypeptide comprising a VH domain and a VL domain, wherein
at least one hypervariable loop or complementarity determining
region (CDR) in the VH domain or the VL domain is obtained from a
VH or VL domain of a species in the family Camelidae.
[0039] In the following passages different aspects of the invention
are defined in more detail. Each aspect so-defined may be combined
with any other aspect or aspects unless clearly indicated to the
contrary. In particular, any feature indicated as being preferred
or advantageous may be combined with any other feature or features
indicated as being preferred or advantageous.
DEFINITIONS
[0040] The term "antigen binding polypeptide" refers to any
polypeptide comprising a VH domain and a VL domain which is
immunoreactive with, exhibits specific binding to, a target
antigen. Exemplary antigen binding polypeptides include antibodies
and immunoglobulins, and also antibody fragments, as discussed
elsewhere herein.
[0041] The term "antigen", when referring to the "target antigen"
against which the antigen binding polypeptide is immunoreactive,
takes its normal meaning to a person of ordinary skill in the art,
and includes, inter alia, polypeptide, peptide, polysaccharide,
glycoprotein, polynucleotide (e.g. DNA), or synthetic chemical
antigens.
[0042] The term "antigen" can also be used to describe the material
employed in the immunisation of animals (e.g. camelids) during the
manufacture of antigen binding polypeptides of the invention. In
this context the term "antigen" may take a wider meaning, and could
encompass purified forms of the antigen, and also crude or
semi-purified preparations of the antigen, such as for example
cells, cell lysates or supernatants, cell fractions, e.g. cell
membranes, etc., plus haptens conjugated with an appropriate
carrier protein. The "antigen" used in an immunisation protocol is
not necessarily structurally identical to the "target antigen" with
which the resulting antigen binding polypeptide is to immunoreact.
Typically the "antigen" used for immunisation may be a truncated
form of the "target antigen", e.g. a fragment containing an
immunogenic epitope. Further characteristics of "antigens" used for
active immunisation are described elsewhere herein, and would be
generally known to a person skilled in the art.
[0043] "Specific binding" between and antigen binding polypeptide
and a target antigen refers to immunological specificity. An
antigen binding polypeptide binds "specifically" to its target
antigen if it binds an epitope on the target antigen in preference
to other epitopes. "Specific binding" does not exclude
cross-reactivity with other antigens bearing similar antigenic
epitopes.
[0044] "Antibodies" (Abs) and "immunoglobulins" (Igs) are
glycoproteins which exhibit binding specificity to a (target)
antigen.
[0045] The camelid species are known to possess two different types
of antibodies; the classical or "conventional" antibodies and also
the heavy-chain antibodies.
[0046] As used herein, the term "conventional antibody" refers to
antibodies of any isotype, including IgA, IgG, IgD, IgE or IgM.
Native or naturally occurring "conventional" camelid antibodies are
usually heterotetrameric glycoproteins, composed of two identical
light (L) chains and two identical heavy (H) chains. Each light
chain is linked to a heavy chain by one covalent disulfide bond,
while the number of disulfide linkages varies among the heavy
chains of different immunoglobulin isotypes. Each heavy and light
chain also has regularly spaced intrachain disulfide bridges. Each
heavy chain has at one end (N-terminal) a variable domain (VH)
followed by a number of constant domains. Each light chain has a
variable domain (VL) at one end (N-terminal) and a constant domain
(CL) at its other end; the constant domain of the light chain is
aligned with the first constant domain of the heavy chain, and the
light-chain variable domain is aligned with the variable domain of
the heavy chain. Particular amino acid residues are believed to
form an interface between the light- and heavy-chain variable
domains.
[0047] The term "heavy-chain antibody" refers to the second type of
antibodies known to occur naturally in camelid species, such
antibodies being naturally devoid of light chains
(Hamers-Casterman, et al. Nature. 1993; 363; 446-8). The
heavy-chain antibodies (abbreviated to HCAb) are composed of two
heavy chains linked by a covalent disulphide bond. Each heavy chain
in the HCAb has a variable domain at one end. The variable domains
of HCAbs are referred to as "VHH" in order to distinguish them from
the variable domains of the heavy chains of "conventional" camelid
antibodies (VH). The VHH domains and VH domains are entirely
distinct and are encoded by different gene segments in the camelid
genome.
[0048] The VL domains in the polypeptide of the invention may be of
the VLambda type or the Vkappa type. The term "VL domain" therefore
refers to both VKappa and VLambda isotypes from Camelidae, and
engineered variants thereof which contain one or more amino acid
substitutions, insertions or deletions relative to a Camelidae VL
domain.
[0049] The term "VH domain" refers to a VH domain of any known
heavy chain isotype of Camelidae, including .gamma., .epsilon.,
.delta., .alpha. or .mu. isotypes, as well as engineered variants
thereof which contain one or more amino acid substitutions,
insertions or deletions relative to a Camelidae VH domain. The term
"VH domain" refers only to VH domains of camelid conventional
antibodies and does not encompass camelid VHH domains.
[0050] The term "variable" refers to the fact that certain portions
of the variable domains VH and VL differ extensively in sequence
among antibodies and are used in the binding and specificity of
each particular antibody for its target antigen. However, the
variability is not evenly distributed throughout the variable
domains of antibodies. It is concentrated in three segments called
"hypervariable loops" in each of the VL domain and the VH domain
which form part of the antigen binding site. The first, second and
third hypervariable loops of the VLambda light chain domain are
referred to herein as L1(.lamda.), L2(.lamda.) and L3(.lamda.) and
may be defined as comprising residues 24-33 (L1(.lamda.),
consisting of 9, 10 or 11 amino acid residues), 49-53 (L2(.lamda.),
consisting of 3 residues) and 90-96 (L3(.lamda.), consisting of 5
residues) in the VL domain (Morea et al., Methods 20:267-279
(2000)). The first, second and third hypervariable loops of the
VKappa light chain domain are referred to herein as L1(.kappa.),
L2(.kappa.) and L3(.kappa.) and may be defined as comprising
residues 25-33 (L1(.kappa.), consisting of 6, 7, 8, 11, 12 or 13
residues), 49-53 (L2(.kappa.), consisting of 3 residues) and 90-97
(L3(.kappa.), consisting of 6 residues) in the VL domain (Morea et
al., Methods 20:267-279 (2000)). The first, second and third
hypervariable loops of the VH domain are referred to herein as H1,
H2 and H3 and may be defined as comprising residues 25-33 (H1,
consisting of 7, 8 or 9 residues), 52-56 (H2, consisting of 3 or 4
residues) and 91-105 (H3, highly variable in length) in the VH
domain (Morea et al., Methods 20:267-279 (2000)).
[0051] Unless otherwise indicated, the terms L1, L2 and L3
respectively refer to the first, second and third hypervariable
loops of a VL domain, and encompass hypervariable loops obtained
from both Vkappa and Vlambda isotypes from Camelidae. The terms H1,
H2 and H3 respectively refer to the first, second and third
hypervariable loops of the VH domain, and encompass hypervariable
loops obtained from any of the known heavy chain isotypes from
Camelidae, including .gamma., .epsilon., .delta., .alpha. or
.mu..
[0052] The hypervariable loops L1, L2, L3, H1, H2 and H3 may each
comprise part of a "complementarity determining region" or "CDR".
The terms "hypervariable loop" and "complementarity determining
region" are not strictly synonymous, since the hypervariable loops
(HVs) are defined on the basis of structure, whereas
complementarity determining regions (CDRs) are defined based on
sequence variability (Kabat et al., Sequences of Proteins of
Immunological Interest, 5th Ed. Public Health Service, National
Institutes of Health, Bethesda, Md., 1983) and the limits of the
HVs and the CDRs may be different in some VH and VL domains.
[0053] The CDRs of the VL and VH domains can typically be defined
as comprising the following amino acids: residues 24-34 (CDRL1),
50-56 (CDRL2) and 89-97 (CDRL3) in the light chain variable domain,
and residues 31-35 or 31-35b (CDRH1), 50-65 (CDRH2) and 95-102
(CDRH3) in the heavy chain variable domain; Kabat et al., Sequences
of Proteins of Immunological Interest, 5th Ed. Public Health
Service, National Institutes of Health, Bethesda, Md. (1991)).
Thus, the HVs may be comprised within the corresponding CDRs and
references herein to the "hypervariable loops" of VH and VL domains
should be interpreted as also encompassing the corresponding CDRs,
and vice versa, unless otherwise indicated.
[0054] The more highly conserved portions of variable domains are
called the framework region (FR). The variable domains of native
heavy and light chains each comprise four FRs (FR1, FR2, FR3 and
FR4, respectively), largely adopting a .beta.-sheet configuration,
connected by the three hypervariable loops. The hypervariable loops
in each chain are held together in close proximity by the FRs and,
with the hypervariable loops from the other chain, contribute to
the formation of the antigen-binding site of antibodies. Structural
analysis of antibodies revealed the relationship between the
sequence and the shape of the binding site formed by the
complementarity determining regions (Chothia et al., J. Mol. Biol.
227: 799-817 (1992)); Tramontano et al., J. Mol. Biol, 215:175-182
(1990)). Despite their high sequence variability, five of the six
loops adopt just a small repertoire of main-chain conformations,
called "canonical structures". These conformations are first of all
determined by the length of the loops and secondly by the presence
of key residues at certain positions in the loops and in the
framework regions that determine the conformation through their
packing, hydrogen bonding or the ability to assume unusual
main-chain conformations.
[0055] The constant domains are not involved directly in binding of
an antibody to an antigen, but exhibit various effector functions,
such as participation of the antibody in antibody-dependent
cellular toxicity (ADCC) or complement-dependent cytotoxicity
(CDC).
[0056] In all aspects and embodiments of the invention, the
Camelidae (or camelid) species (from which the hypervariable loops
or CDRs of the antigen binding polypeptide of the invention are
obtained) can be camel, llama, dromedary, vicunia, guanaco or
alpaca and any crossings thereof. Llama (Lama glama) and alpaca
(Lama pacos) are the preferred Camelidae species for all aspects of
the invention.
[0057] The antigen binding polypeptides of the invention are
characterised in that they contain at least one hypervariable loop
or complementarity determining region which is obtained from a VH
domain or a VL domain of a species in the family Camelidae. For the
avoidance of doubt, the terms "VH domain" "VL domain" refer to
domains derived from camelid conventional antibodies. This
definition excludes the camelid heavy chain only VHH antibodies,
and recombinant constructs containing solely HVs or CDRs of camelid
VHH domains, which are not encompassed within the scope of the
present invention.
[0058] By "hypervariable loop or complementarity determining region
obtained from a VH domain or a VL domain of a species in the family
Camelidae" is meant that that hypervariable loop (HV) or CDR has an
amino acid sequence which is identical, or substantially identical,
to the amino acid sequence of a hypervariable loop or CDR which is
encoded by a Camelidae immunoglobulin gene. In this context
"immunoglobulin gene" includes germline genes, immunoglobulin genes
which have undergone rearrangement, and also somatically mutated
genes. Thus, the amino acid sequence of the HV or CDR obtained from
a VH or VL domain of a Camelidae species may be identical to the
amino acid sequence of a HV or CDR present in a mature Camelidae
conventional antibody. The term "obtained from" in this context
implies a structural relationship, in the sense that the HVs or
CDRs of the antigen binding polypeptide of the invention embody an
amino acid sequence (or minor variants thereof) which was
originally encoded by a Camelidae immunoglobulin gene. However,
this does not necessarily imply a particular relationship in terms
of the production process used to prepare the antigen binding
polypeptide of the invention. As will be discussed below, there are
several processes which may be used to prepare antigen binding
polypeptides comprising HVs or CDRs with amino acid sequences
identical to (or substantially identical to) sequences originally
encoded by a Camelidae immunoglobulin gene.
[0059] For the avoidance of doubt, the terms "VH domain of a
conventional antibody of a camelid" and "VH domain obtained from a
species of Camelidae" are used synonymously and encompass VH
domains which are the products of synthetic or engineered
recombinant genes (including codon-optimised synthetic genes),
which VH domains have an amino acid sequence identical to (or
substantially identical to) the amino acid sequence of a VH domain
encoded by a Camelidae immunoglobulin gene (germline, rearranged or
somatically mutated). Similarly, the terms "VL domain of a
conventional antibody of a camelid" and "VL domain obtained from a
species of Camelidae" are used synonymously and encompass VL
domains which are the products of synthetic or engineered
recombinant genes (including codon-optimised synthetic genes),
which VL domains have an amino acid sequence identical to (or
substantially identical to) the amino acid sequence of a VL domain
encoded by a Camelidae immunoglobulin gene (germline, rearranged or
somatically mutated).
[0060] The antigen binding polypeptides of the invention are
typically recombinantly expressed polypeptides, and may be chimeric
polypeptides. The term "chimeric polypeptide" refers to an
artificial (non-naturally occurring) polypeptide which is created
by juxtaposition of two or more peptide fragments which do not
otherwise occur contiguously. Included within this definition are
"species" chimeric polypeptides created by juxtaposition of peptide
fragments encoded by two or more species, e.g. camelid and
human.
[0061] The antigen binding polypeptides of the invention are not
naturally occurring human antibodies, specifically human
autoantibodies, due to the requirement for at least one
hypervariable loop (or CDR) from camelid. By "naturally occurring"
human antibody is meant an antibody which is naturally expressed
within a human subject. Antigen binding polypeptides having an
amino acid sequence which is 100% identical to the amino acid
sequence of a naturally occurring human antibody, or a fragment
thereof, which natural antibody or fragment is not chimeric and has
not been subject to any engineered changes in amino acid sequence
(excluding somatic mutations) are excluded from the scope of the
invention.
[0062] The antigen binding polypeptides according to the invention
comprise both a heavy chain variable (VH) domain and a light chain
variable (VL) domain, and are characterised in that at least one
hypervariable loop or complementarity determining region in either
the VH domain or the VL domain is obtained from a species in the
family Camelidae.
[0063] In alternative embodiments, either H1 or H2, or both H1 and
H2 in the VH domain may be obtained from a species in the family
Camelidae, and independently either L1 or L2 or both L1 and L2 in
the VL domain may be obtained from a species in the family
Camelidae. In further embodiments H3 in the VH domain or L3 in the
VL domain may also be obtained from a species in the family
Camelidae. All possible permutations of the foregoing are
permitted.
[0064] In one specific embodiment each of the hypervariable loops
H1, H2, H3, L1, L2 and L3 in both the VH domain and the VL domain
may be obtained from a species in the family Camelidae.
[0065] In one embodiment the entire VH domain and/or the entire VL
domain may be obtained from a species in the family Camelidae. The
Camelidae VH domain and/or the Camelidae VL domain may then be
subject to protein engineering, in which one or more amino acid
substitutions, insertions or deletions are introduced into the
Camelidae sequence. These engineered changes preferably include
amino acid substitutions relative to the Camelidae sequence. Such
changes include "humanisation" or "germlining" wherein one or more
amino acid residues in a camelid-encoded VH or VL domain are
replaced with equivalent residues from a homologous human-encoded
VH or VL domain.
[0066] In certain embodiments, Camelidae hypervariable loops (or
CDRs) may be obtained by active immunisation of a species in the
family Camelidae with a desired target antigen. As discussed and
exemplified in detail herein, following immunisation of Camelidae
(either the native animal or a transgenic animal engineered to
express the immunoglobulin repertoire of a camelid species) with
the target antigen, B cells producing (conventional Camelidae)
antibodies having specificity for the desired antigen can be
identified and polynucleotide encoding the VH and VL domains of
such antibodies can be isolated using known techniques.
[0067] Thus, in a specific embodiment, the invention provides a
recombinant antigen binding polypeptide immunoreactive with a
target antigen, the polypeptide comprising a VH domain and a VL
domain, wherein at least one hypervariable loop or complementarity
determining region in the VH domain or the VL domain is obtained
from a VH or VL domain of a species in the family Camelidae, which
antigen binding polypeptide is obtainable by a process comprising
the steps of: [0068] (a) immunising a species in the family
Camelidae with a target antigen or with a polynucleotide encoding
said target antigen and raising an antibody to said target antigen;
[0069] (b) determining the nucleotide sequence encoding at least
one hypervariable loop or complementarity determining region (CDR)
of the VH and/or the VL domain of a Camelidae conventional antibody
immunoreactive with said target antigen; and [0070] (c) expressing
an antigen binding polypeptide immunoreactive with said target
antigen, said antigen binding polypeptide comprising a VH and a VL
domain, wherein at least one hypervariable loop or complementarity
determining region (CDR) of the VH domain or the VL domain has an
amino acid sequence encoded by the nucleotide sequence determined
in part (a).
[0071] Isolated Camelidae VH and VL domains obtained by active
immunisation can be used as a basis for engineering antigen binding
polypeptides according to the invention. Starting from intact
Camelidae VH and VL domains, it is possible to engineer one or more
amino acid substitutions, insertions or deletions which depart from
the starting Camelidae sequence. In certain embodiments, such
substitutions, insertions or deletions may be present in the
framework regions of the VH domain and/or the VL domain. The
purpose of such changes in primary amino acid sequence may be to
reduce presumably unfavourable properties (e.g. immunogenicity in a
human host (so-called humanization), sites of potential product
heterogeneity and or instability (glycosylation, deamidation,
isomerisation, etc.) or to enhance some other favourable property
of the molecule (e.g. solubility, stability, bioavailability,
etc.). In other embodiments, changes in primary amino acid sequence
can be engineered in one or more of the hypervariable loops (or
CDRs) of a Camelidae VH and/or VL domain obtained by active
immunisation. Such changes may be introduced in order to enhance
antigen binding affinity and/or specificity, or to reduce
presumably unfavourable properties, e.g. immunogenicity in a human
host (so-called humanization), sites of potential product
heterogeneity and or instability, glycosylation, deamidation,
isomerisation, etc., or to enhance some other favourable property
of the molecule, e.g. solubility, stability, bioavailability,
etc.
[0072] Thus, in one embodiment, the invention provides a
recombinant antigen binding polypeptide which contains at least one
amino acid substitution in at least one framework or CDR region of
either the VH domain or the VL domain in comparison to a Camelidae
VH or VL domain obtained by active immunisation of a species in the
family Camelidae with a target antigen. This particular embodiment
excludes antigen binding polypeptides containing native Camelidae
VH and VL domains produced by active immunisation
[0073] As an alternative to "active immunisation" with a target
antigen (or a composition comprising the target antigen or a
polynucleotide encoding it) it is also possible to make use of
immune responses in diseased Camelidae animals or naturally
occurring immune responses within Camelidae species as a source of
VH and/or VL domains which can be used as components of antigen
binding polypeptides with the desired antigen-binding properties.
Such VH/VL domains may also be used as the starting point for
engineering antigen-binding polypeptides in an analogous manner to
VH/VL domains obtained by active immunisation. The invention still
further encompasses the use of non-immune libraries, and to
antigen-binding polypeptides obtained/derived therefrom.
[0074] In other embodiments, the invention encompasses "chimeric"
antibody molecules comprising VH and VL domains from Camelidae (or
engineered variants thereof) and one or more constant domains from
a non-camelid antibody, for example human-encoded constant domains
(or engineered variants thereof). The invention also extends to
chimeric antigen binding polypeptides (e.g. antibody molecules)
wherein one of the VH or the VL domain is camelid-encoded, and the
other variable domain is non-camelid (e.g. human). In such
embodiments it is preferred that both the VH domain and the VL
domain are obtained from the same species of camelid, for example
both VH and VL may be from Lama glama or both VH and VL may be from
Lama pacos (prior to introduction of engineered amino acid sequence
variation). In such embodiments both the VH and the VL domain may
be derived from a single animal, particularly a single animal which
has been actively immunised.
[0075] As an alternative to engineering changes in the primary
amino acid sequence of Camelidae VH and/or VL domains, individual
Camelidae hypervariable loops or CDRs, or combinations thereof, can
be isolated from Camelidae VH/VL domains and transferred to an
alternative (i.e. non-Camelidae) framework, e.g. a human VH/VL
framework, by CDR grafting.
Sequence Identity/Homology with Human Variable Domains
[0076] The present inventors have observed that Camelidae germline
and somatically mutated DNA sequences encoding both the VH and the
VL domains of conventional antibodies from species in the family
Camelidae exhibit a high degree of sequence identity/sequence
homology with the human germline DNA sequences which encode VH and
VL domains of human antibodies, over the framework regions.
[0077] Thus, the antigen binding polypeptides of the invention are
characterised in that they exhibit a high degree of amino acid
sequence homology with VH and VL domains of human antibodies.
[0078] In one embodiment the VH domain of the antigen binding
polypeptide according to the invention may exhibit an amino acid
sequence identity or sequence homology of 80% or greater with one
or more human VH domains across the framework regions FR1, FR2, FR3
and FR4. In other embodiments the amino acid sequence identity or
sequence homology between the VH domain of the polypeptide of the
invention and one or more human VH domains may be 85% or greater,
90% or greater, 95% or greater, 97% or greater, or up to 99% or
even 100%, of course with the proviso that at least one
hypervariable loop or CDR is obtained from Camelidae, i.e. has an
amino acid sequence which is identical (or substantially identical)
to the amino acid sequence of a hypervariable loop or CDR encoded
by a Camelidae VH or VL gene.
[0079] In one embodiment the VH domain of the polypeptide of the
invention may contain one or more amino acid sequence mis-matches
across the framework regions FR1, FR2, FR3 and FR4, in comparison
to the closest matched human VH sequence. This latter embodiment
would expressly exclude polypeptides comprising a VH domain, or
both VH and VL domains, in which the framework region has entirely
human sequence.
[0080] In another embodiment the VL domain of the antigen binding
polypeptide according to the invention may exhibit a sequence
identity or sequence homology of 80% or greater with one or more
human VL domains across the framework regions FR1, FR2, FR3 and
FR4. In other embodiments the amino acid sequence identity or
sequence homology between the VL domain of the polypeptide of the
invention and one or more human VL domains may be 80% or greater
90% or greater, 95% or greater, 97% or greater, or up to 99% or
even 100%.
[0081] In one embodiment the VL domain of the polypeptide of the
invention may contain one or more amino acid sequence mis-matches
across the framework regions FR1, FR2, FR3 and FR4, in comparison
to the closest matched human VL sequence. This latter embodiment
would expressly exclude polypeptides comprising VL domain, or both
VL and VH domains in which the framework region has entirely human
sequence.
[0082] The antigen binding polypeptide of the invention may
comprise a "fully human" VH or VL domain, provided that only one
fully human variable domain is present, and then in combination
with a variable domain comprising hypervariable loop(s) or CDR(s)
obtained from Camelidae.
[0083] Representative alignments of Camelidae and human germline
sequences included in the accompanying examples reveal that the
conventional camelid VH and VL domains exhibit a remarkably high
sequence homology to their human counterparts. From these examples
it can be concluded that typically less than 8, and often only as
few as 5 amino acid residues present in the framework regions of a
VH or VL domain differ in a given position from the closest human
germline-encoded sequences. Given that there are no structural
limitations associated with those positions, humanization by site
directed mutagenesis is expected to be straightforward.
[0084] Therefore, in a particular embodiment, the antigen binding
polypeptides of the invention may comprise VH and/or VL domains of
conventional Camelidae antibodies, for example conventional
Camelidae antibodies obtained (obtainable) by active immunisation
of camelidae with a target antigen (or polynucleotide encoding the
target antigen), wherein said VH and VL domains have been
(independently) engineered to introduce a total of between 1 and
10, i.e. 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 amino acid substitutions
across the framework regions FR1, FR2, FR3 and FR4 in either one or
both of the VH domain and the VL domain. Such amino acid
substitutions may include (but are not limited to) substitutions
which result in "humanisation", by replacing mis-matched amino acid
residues in a starting Camelidae VH or VL domain with the
equivalent residue found in a human germline-encoded VH or VL
domain. It is also possible to independently make amino acid
substitutions in the hypervariable loops (CDRs) of said
camelid-derived VH and VL domains, and such variants may form part
of the present invention. References herein to "amino acid
substitutions" include substitutions in which a naturally occurring
amino acid is replaced with a non-natural amino acid, or an amino
acid subjected to post-translational modification.
[0085] Before analyzing the percentage sequence identity between
Camelidae and human germline VH and VL, the canonical folds may be
determined, which allows the identification of the family of human
germline segments with the identical combination of canonical folds
for H1 and H2 or L1 and L2 (and L3). Subsequently the human
germline family member that has the highest degree of sequence
homology with the Camelidae variable region of interest is chosen
for scoring the sequence homology. The determination of Chothia
canonical classes of hypervariable loops L1, L2, L3, H1 and H2 was
performed with the bioinformatics tools publicly available on
webpage www.bioinf.org.uk/abs/chothia/html.page. The output of the
program shows the key residue requirements in a datafile. In these
datafiles, the key residue positions are shown with the allowed
amino acids at each position. The sequence of the variable region
of the antibody is given as input and is first aligned with a
consensus antibody sequence to assign the Kabat numbering scheme.
The analysis of the canonical folds uses a set of key residue
templates derived by an automated method developed by Martin and
Thornton (Martin et al., J. Mol. Biol. 263:800-815 (1996)).
[0086] With the particular human germline V segment known, which
uses the same combination of canonical folds for H1 and H2 or L1
and L2 (and L3), the best matching family member in terms of
sequence homology was determined. With bioinformatics tools the
percentage sequence identity between Camelidae VH and VL domain
framework amino acid sequences and corresponding sequences encoded
by the human germline can be determined, but actually manual
aligning of the sequences can be applied as well. Human
immunoglobulin sequences can be identified from several protein
data bases, such as VBase (http://vbase.mrc-cpe.cam.ac.uk/) or the
Pluckthun/Honegger database
(http://www.bioc.unizh.ch/antibody/Sequences/Germlines. To compare
the human sequences to the V regions of Camelidae VH or VL domains
a sequence alignment algorithm such as available via websites like
www.expasy.ch/tools/#aliqn can be used, but also manual alignment
with the limited set of sequences can be performed. Human germline
light and heavy chain sequences of the families with the same
combinations of canonical folds and with the highest degree of
homology with the framework regions 1, 2, and 3 of each chain are
selected and compared with the Camelidae variable region of
interest; also the FR4 is checked against the human germline JH and
JK or JL regions.
[0087] Note that in the calculation of overall percent sequence
homology the residues of FR1, FR2 and FR3 are evaluated using the
closest match sequence from the human germline family with the
identical combination of canonical folds. Only residues different
from the closest match or other members of the same family with the
same combination of canonical folds are scored (NB--excluding any
primer-encoded differences). However, for the purposes of
humanization, residues in framework regions identical to members of
other human germline families, which do not have the same
combination of canonical folds, can be considered "human", despite
the fact that these are scored "negative" according to the
stringent conditions described above. This assumption is based on
the "mix and match" approach for humanization, in which each of
FR1, FR2, FR3 and FR4 is separately compared to its closest
matching human germline sequence and the humanized molecule
therefore contains a combination of different FRs as was done by Qu
and colleagues (Qu et la., Clin. Cancer Res. 5:3095-3100 (1999))
and Ono and colleagues (Ono et al., Mol. Immunol. 36:387-395
(1999)).
[0088] The boundaries of the individual framework regions may be
assigned using the IMGT numbering scheme, which is an adaptation of
the numbering scheme of Chothia (Lefranc et al., NAR 27: 209-212
(1999); http://imgt.cines.fr).
[0089] Despite the unexpectedly high sequence homology between
Camelidae and human across the framework regions of the VH and VL
domains, it is nevertheless possible to distinguish camelid-encoded
hypervariable loops (CDRs) from human-encoded hypervariable loops
(CDRs) by straightforward sequence comparison with camelid and
human germline VH and VL sequences.
Structural Homology with Human-Encoded VH and VL Domains
[0090] A preferred embodiment is also to use Camelid hypervariable
loops or CDRs having human or human-like canonical folds, as
discussed in detail below.
[0091] Thus, in one embodiment at least one hypervariable loop or
CDR in either the VH domain or the VL domain of the antigen binding
polypeptide of the invention is obtained from a VH or VL domain
obtained from a species of Camelidae, yet exhibits a predicted or
actual canonical fold structure which is substantially identical to
a canonical fold structure which occurs in human antibodies.
[0092] It is well established in the art that although the primary
amino acid sequences of hypervariable loops present in both VH
domains and VL domains encoded by the human germline are, by
definition, highly variable, all hypervariable loops, except CDR H3
of the VH domain, adopt only a few distinct structural
conformations, termed canonical folds (Chothia et al., J. Mol.
Biol. 196:901-917 (1987); Tramontano et al. Proteins 6:382-94
(1989)), which depend on both the length of the hypervariable loop
and presence of the so-called canonical amino acid residues
(Chothia et al., J. Mol. Biol. 196:901-917 (1987)). Actual
canonical structures of the hypervariable loops in intact VH or VL
domains can be determined by structural analysis (e.g. X-ray
crystallography), but it is also possible to predict canonical
structure on the basis of key amino acid residues which are
characteristic of a particular structure (discussed further below).
In essence, the specific pattern of residues that determines each
canonical structure forms a "signature" which enables the canonical
structure to be recognised in hypervariable loops of a VH or VL
domain of unknown structure; canonical structures can therefore be
predicted on the basis of primary amino acid sequence alone.
[0093] Based on analysis of germline and somatically mutated VH and
VL sequences, the present inventors predict that the hypervariable
loops of Camelidae VH and VL domains (with the exception of H3 in
the VH domain and sometimes also L3 in the VL domain) also adopt
canonical fold structures which are substantially identical to
canonical fold structures adopted by the hypervariable loops of
human antibodies.
[0094] The predicted canonical fold structures for the
hypervariable loops of any given VH or VL sequence in an antigen
binding polypeptide can be analysed using algorithms which are
publicly available from www.bioinf.org.uk/abs/chothia.html,
www.biochem.ucl.ac.uk/.about.martin/antibodies.html and
www.bioc.unizh.ch/antibody/Sequences/Germlines/Vbase_hVk.html.
These tools permit query VH or VL sequences to be aligned against
human VH or VL domain sequences of known canonical structure, and a
prediction of canonical structure made for the hypervariable loops
of the query sequence.
[0095] In the case of the VH domain, H1 and H2 loops derived from
Camelidae may be scored as having a canonical fold structure
"substantially identical" to a canonical fold structure known to
occur in human antibodies if at least the first, and preferable
both, of the following criteria are fulfilled:
[0096] 1. An identical length, determined by the number of
residues, to the closest matching human canonical structural
class.
[0097] 2. At least 33% identity, preferably at least 50% identity
with the key amino acid residues described for the corresponding
human H1 and H2 canonical structural classes.
[0098] (note for the purposes of the foregoing analysis the H1 and
H2 loops are treated separately and each compared against its
closest matching human canonical structural class)
[0099] The foregoing analysis relies on prediction of the canonical
structure of the Camelidae H1 and H2 loops. If the actual structure
of the H1 and H2 loops is known, for example based on X-ray
crystallography, then the H1 and H2 loops derived from Camelidae
may also be scored as having a canonical fold structure
"substantially identical" to a canonical fold structure known to
occur in human antibodies if the length of the loop differs from
that of the closest matching human canonical structural class
(typically by .+-.1 or .+-.2 amino acids) but the actual structure
of the Camelidae H1 and H2 loops matches the structure of a human
canonical fold.
[0100] Key amino acid residues found in the human canonical
structural classes for the first and second hypervariable loops of
human VH domains (H1 and H2) are described by Chothia et al., J.
Mol. Biol. 227:799-817 (1992), the contents of which are
incorporated herein in their entirety by reference. In particular,
Table 3 on page 802 of Chothia et al., which is specifically
incorporated herein by reference, lists preferred amino acid
residues at key sites for H1 canonical structures found in the
human germline, whereas Table 4 on page 803, also specifically
incorporated by reference, lists preferred amino acid residues at
key sites for CDR H2 canonical structures found in the human
germline.
[0101] The accompanying examples contain an analysis of germline VH
sequences from Camelidae species (specifically llama and dromedary)
comparing the actual amino acid residues found in Camelidae versus
the amino acid residues in the closest human germline VH sequence,
for each of the positions in H1 and H2, and underlying framework
regions, considered to be key for the canonical fold structure
according to the criteria of Chothia et al., J Mol Biol.
227:799-817 (1992). It is observed that the number of identical key
residues between camelid and human is most often above 33%, and
typically in the range of from 50 to 100%.
[0102] In one embodiment, both H1 and H2 in the VH domain of the
antigen binding polypeptide of the invention are obtained from a VH
domain of a Camelidae species, yet exhibit a predicted or actual
canonical fold structure which is substantially identical to a
canonical fold structure which occurs in human antibodies.
[0103] The inventors surmise that it is important not only for the
hypervariable loops, specifically H1 and H2 in the VH domain,
individually to have canonical structures of a type which occurs
naturally in human antibodies, it is also important for H1 and H2
in any given VH domain to form a combination of canonical fold
structures which is identical to a combination of canonical
structures known to occur in at least one human germline VH domain.
It has been observed that only certain combinations of canonical
fold structures at H1 and H2 actually occur in VH domains encoded
by the human germline. The present inventors were surprised to
discover that every available Camelidae germline or somatically
mutated VH sequence which could be analysed exhibited not only
individual canonical fold structures at H1 and H2 substantially
identical to those used in human antibodies, but also the correct
combinations of structures at H1 and H2 to match combinations found
in human antibodies. This represents a distinct advantage over
other platforms for production of antibodies for potential
therapeutic use in humans which may produce antibodies having
"correct" human-like canonical fold structures at H1 and H2 but in
a combination which does not occur in human antibodies. By way of
example, the inventors' own analysis of the structure of antibodies
derived from non-human primates (Biogen DEC's galiximab (anti-CD80)
an lumiliximab (anti-CD23) and the non-human primate mAb against
Anthrax Toxin from Pelat et al., J. Mol. Biol. 384:1400-7 (2008))
indicates that structurally they are not consistently very close to
the human antibody structure, particularly having regard to the
combination of canonical folds. The absence of a correct
combination of canonical folds at H1 and H2 could lead to a given
antigen binding polypeptide (which is "humanised" in the framework
regions) being immunogenic in a human host.
[0104] Thus, in a further embodiment H1 and H2 in the VH domain of
the antigen binding polypeptide of the invention are obtained from
a VH domain of a Camelidae species, yet form a combination of
predicted or actual canonical fold structures which is identical to
a combination of canonical fold structures known to occur in a
human germline or somatically mutated VH domain.
[0105] In non-limiting embodiments H1 and H2 in the VH domain of
the antigen binding polypeptide of the invention are obtained from
a VH domain of a Camelidae species, and form one of the following
canonical fold combinations: 1-1, 1-2, 1-3, 1-6, 1-4, 2-1, 3-1 and
3-5.
[0106] It is preferred that the VH domain of the antigen binding
polypeptide of the invention exhibit both high sequence
identity/sequence homology with human VH, and also that the
hypervariable loops in the VH domain exhibit structural homology
with human VH.
[0107] It may be advantageous for the canonical folds present at H1
and H2 in the VH domain of the antigen binding polypeptide
according to the invention, and the combination thereof, to be
"correct" for the human VH germline sequence which represents the
closest match with the VH domain of the antigen binding polypeptide
of the invention in terms of overall primary amino acid sequence
identity. By way of example, if the closest sequence match is with
a human germline VH3 domain, then it may be advantageous for H1 and
H2 (obtained from Camelidae) to form a combination of canonical
folds which also occurs naturally in a human VH3 domain.
[0108] Thus, in one embodiment the VH domain of the antigen binding
polypeptide of the invention may exhibit a sequence identity or
sequence homology of 80% or greater, 85% or greater, 90% or
greater, 95% or greater, 97% or greater, or up to 99% or even 100%
with a human VH domain across the framework regions FR1, FR2, FR3
and FR4, and in addition H1 and H2 in the same antigen binding
polypeptide are obtained from a VH domain of a Camelidae species,
but form a combination of predicted or actual canonical fold
structures which is the same as a canonical fold combination known
to occur naturally in the same human VH domain.
[0109] In other embodiments, L1 and L2 in the VL domain of the
antigen binding polypeptide of the invention are each obtained from
a VL domain of a Camelidae species, and each exhibit a predicted or
actual canonical fold structure which is substantially identical to
a canonical fold structure which occurs in human antibodies.
[0110] As with the VH domains, the hypervariable loops of VL
domains of both VLambda and VKappa types can adopt a limited number
of conformations or canonical structures, determined in part by
length and also by the presence of key amino acid residues at
certain canonical positions.
[0111] L1, L2 and L3 loops obtained from a VL domain of a Camelidae
species, yet may be scored as having a canonical fold structure
"substantially identical" to a canonical fold structure known to
occur in human antibodies if at least the first, and preferable
both, of the following criteria are fulfilled:
[0112] 1. An identical length, determined by the number of
residues, to the closest matching human structural class.
[0113] 2. At least 33% identity, preferably at least 50% identity
with the key amino acid residues described for the corresponding
human L1 or L2 canonical structural classes, from either the
VLambda or the VKappa repertoire.
[0114] (note for the purposes of the foregoing analysis the L1 and
L2 loops are treated separately and each compared against its
closest matching human canonical structural class)
[0115] The foregoing analysis relies on prediction of the canonical
structure of the Camelidae L1, L2 and L3 loops. If the actual
structure of the L1, L2 and L3 loops is known, for example based on
X-ray crystallography, then L1, L2 or L3 loops derived from
Camelidae may also be scored as having a canonical fold structure
"substantially identical" to a canonical fold structure known to
occur in human antibodies if the length of the loop differs from
that of the closest matching human canonical structural class
(typically by .+-.1 or .+-.2 amino acids) but the actual structure
of the Camelidae loops matches a human canonical fold.
[0116] Key amino acid residues found in the human canonical
structural classes for the CDRs of human VLambda and VKappa domains
are described by Morea et al. Methods, 20: 267-279 (2000) and
Martin et al., J. Mol. Biol., 263:800-815 (1996). The structural
repertoire of the human VKappa domain is also described by
Tomlinson et al. EMBO J. 14:4628-4638 (1995), and that of the
VLambda domain by Williams et al. J. Mol. Biol., 264:220-232
(1996). The contents of all these documents are to be incorporated
herein by reference.
[0117] The accompanying examples contain an analysis of germline VL
sequences or both kappa and lambda type from Camelidae species
(specifically llama and dromedary), comparing the actual amino acid
residues found in Camelidae versus the amino acid residues in the
closest human germline VLambda or VKappa sequence, for each of the
positions in L1 and L2 considered to be key for the canonical fold
structure. It is observed that the number of identical key residues
between camelid and human is typically in the range of from 33 to
100%, more often between 50 to 100%, typically closer to 100%.
[0118] L1 and L2 in the VL domain may form a combination of
predicted or actual canonical fold structures which is identical to
a combination of canonical fold structures known to occur in a
human germline VL domain.
[0119] In non-limiting embodiments L1 and L2 in the VLambda domain
may form one of the following canonical fold combinations: 11-7,
13-7(A,B,C), 14-7(A,B), 12-11, 14-11 and 12-12 (as defined in
Williams et al. J. Mol. Biol. 264:220-32 (1996) and as shown on
http://www.bioc.uzh.ch/antibody/Sequences/Germlines/VBase_hVL.html).
In non-limiting embodiments L1 and L2 in the Vkappa domain may form
one of the following canonical fold combinations: 2-1, 3-1, 4-1 and
6-1 (as defined in Tomlinson et al. EMBO J. 14:4628-38 (1995) and
as shown on
http://www.bioc.uzh.ch/antibody/Sequences/Germlines/VBase_hVK.html).
[0120] In a further embodiment, all three of L1, L2 and L3 in the
VL domain may exhibit a substantially human structure. Most human
V.kappa. germline segments encode also a single conformation of the
L3 loop (type 1), which is stabilized by the conserved cis-proline
on position 95, but other conformations in rearranged sequences are
possible due to the process of V-J joining and the potential loss
of this proline residue. The publicly available somatically mutated
dromedary V.kappa. sequences have a type 1 canonical fold for
L3(.kappa.) like is found in human kappa germline sequences, and
Proline on position 95 occurs in six out of seven dromedary
V.kappa. domains. Therefore, where the antigen binding polypeptide
contains a V.kappa. domain, this domain may possess the conserved
Proline residue on position 95.
[0121] The structural repertoire of the human VL germline sequences
was analyzed by Williams and colleagues (Williams et al., J. Mol.
Biol. 264:220-232 (1996)). The three families analyzed here encode
identical conformations of the L2 loop. The L3 loop conformation is
thought to be more highly variable, as there is some length
variation and no cis-proline residue. Indeed the available
somatically mutated dromedary V.lamda. sequences show a high
variability in the length of L3. Most of these have a canonical
fold for L3 (f.i. VLambda 3-1 family members Camvl19 (10A) and
Camvl20 (1/9A), VLambda 2-18 family members Camvl5, 17, 30, 36 and
52 (all 10B) and VLambda 1-40 family member Camvl44 (5/11A)).
[0122] It is preferred that the VL domain of the antigen binding
polypeptide of the invention exhibit both high sequence
identity/sequence homology with human VL, and also that the
hypervariable loops in the VL domain exhibit structural homology
with human VL.
[0123] In one embodiment, the VL domain of the antigen binding
polypeptide of the invention may exhibit a sequence identity of 80%
or greater, 85% or greater, 90% or greater, 95% or greater, 97% or
greater, or up to 99% or even 100% with a human VL domain across
the framework regions FR1, FR2, FR3 and FR4, and in addition
hypervariable loop L1 and hypervariable loop L2 may form a
combination of predicted or actual canonical fold structures which
is the same as a canonical fold combination known to occur
naturally in the same human VL domain.
[0124] It is, of course, envisaged that VH domains exhibiting high
sequence identity/sequence homology with human VH, and also
structural homology with hypervariable loops of human VH will be
combined with VL domains exhibiting high sequence identity/sequence
homology with human VL, and also structural homology with
hypervariable loops of human VL to provide antigen binding
polypeptides containing (camelid-derived) VH/VL pairings with
maximal sequence and structural homology to human-encoded VH/VL
pairings. A particular advantage of the camelid platform provided
by the invention is that both the VH domain and the VL domain
exhibit high sequence and structural homology with the variable
domains of human antibodies.
Structure of the Antigen Binding Polypeptide
[0125] The antigen binding polypeptide of the invention can take
various different embodiments, provided that both a VH domain and a
VL domain are present. Thus, in non-limiting embodiments the
antigen binding polypeptide may be an immunoglobulin, an antibody
or antibody fragment. The term "antibody" herein is used in the
broadest sense and encompasses, but is not limited to, monoclonal
antibodies (including full length monoclonal antibodies),
polyclonal antibodies, multispecific antibodies (e.g., bispecific
antibodies), so long as they exhibit the appropriate specificity
for a target antigen. The term "monoclonal antibody" as used herein
refers to an antibody obtained from a population of substantially
homogeneous antibodies, i.e., the individual antibodies comprising
the population are identical except for possible naturally
occurring mutations that may be present in minor amounts.
Monoclonal antibodies are highly specific, being directed against a
single antigenic site. Furthermore, in contrast to conventional
(polyclonal) antibody preparations which typically include
different antibodies directed against different determinants
(epitopes) on the antigen, each monoclonal antibody is directed
against a single determinant or epitope on the antigen.
[0126] "Antibody fragments" comprise a portion of a full length
antibody, generally the antigen binding or variable domain thereof.
Examples of antibody fragments include Fab, Fab', F(ab')2,
bi-specific Fab's, and Fv fragments, diabodies, linear antibodies,
single-chain antibody molecules, a single chain variable fragment
(scFv) and multispecific antibodies formed from antibody fragments
(see Holliger and Hudson, Nature Biotechnol. 23:1126-36 (2005), the
contents of which are incorporated herein by reference).
[0127] In non-limiting embodiments, antibodies and antibody
fragments according to the invention may comprise CH1 domains
and/or CL domains, the amino acid sequence of which is fully or
substantially human. Where the antigen binding polypeptide of the
invention is an antibody intended for human therapeutic use, it is
typical for the entire constant region of the antibody, or at least
a part thereof, to have fully or substantially human amino acid
sequence. Therefore, an antibody of the invention must comprise VH
and VL domains, at least one of which includes at least one
hypervariable loop derived from Camelidae, but one or more or any
combination of the CH1 domain, hinge region, CH2 domain, CH3 domain
and CL domain (and CH4 domain if present) may be fully or
substantially human with respect to its amino acid sequence.
[0128] Advantageously, the CH1 domain, hinge region, CH2 domain,
CH3 domain and CL domain (and CH4 domain if present) may all have
fully or substantially human amino acid sequence. In the context of
the constant region of a humanised or chimeric antibody, or an
antibody fragment, the term "substantially human" refers to an
amino acid sequence identity of at least 90%, or at least 95%, or
at least 97%, or at least 99% with a human constant region. The
term "human amino acid sequence" in this context refers to an amino
acid sequence which is encoded by a human immunoglobulin gene,
which includes germline, rearranged and somatically mutated genes.
The invention also contemplates polypeptides comprising constant
domains of "human" sequence which have been altered, by one or more
amino acid additions, deletions or substitutions with respect to
the human sequence.
[0129] As discussed elsewhere herein, it is contemplated that one
or more amino acid substitutions, insertions or deletions may be
made within the constant region of the heavy and/or the light
chain, particularly within the Fc region. Amino acid substitutions
may result in replacement of the substituted amino acid with a
different naturally occurring amino acid, or with a non-natural or
modified amino acid. Other structural modifications are also
permitted, such as for example changes in glycosylation pattern
(e.g. by addition or deletion of N- or O-linked glycosylation
sites). Depending on the intended use of the antibody, it may be
desirable to modify the antibody of the invention with respect to
its binding properties to Fc receptors, for example to modulate
effector function. For example cysteine residue(s) may be
introduced in the Fc region, thereby allowing interchain disulfide
bond formation in this region. The homodimeric antibody thus
generated may have improved internalization capability and/or
increased complement-mediated cell killing and antibody-dependent
cellular cytotoxicity (ADCC). See Caron et al., J. Exp. Med.
176:1191-1195 (1992) and Shopes, B. J. Immunol. 148:2918-2922
(1992). Alternatively, an antibody can be engineered which has dual
Fc regions and may thereby have enhanced complement lysis and ADCC
capabilities. See Stevenson et al., Anti-Cancer Drug Design
3:219-230 (1989). The invention also contemplates immunoconjugates
comprising an antibody as described herein conjugated to a
cytotoxic agent such as a chemotherapeutic agent, toxin (e.g., an
enzymatically active toxin of bacterial, fungal, plant or animal
origin, or fragments thereof), or a radioactive isotope (i.e., a
radioconjugate). Fc regions may also be engineered for half-life
extension.
[0130] The invention can, in certain embodiments, encompass
chimeric Camelidae/human antibodies, and in particular chimeric
antibodies in which the VH and VL domains are of fully camelid
sequence (e.g. Llama or alpaca) and the remainder of the antibody
is of fully human sequence. In preferred embodiments the invention
also encompasses "humanised" or "germlined" Camelidae antibodies,
and Camelidae/human chimeric antibodies, in which the VH and VL
domains contain one or more amino acid substitutions in the
framework regions in comparison to Camelidae VH and VL domains
obtained by active immunisation. Such "humanisation" increases the
% sequence identity with human germline VH or VL domains by
replacing mis-matched amino acid residues in a starting Camelidae
VH or VL domain with the equivalent residue found in a human
germline-encoded VH or VL domain.
[0131] The invention still further encompasses CDR-grafted
antibodies in which CDRs (or hypervariable loops) derived from a
Camelidae antibody, for example an Camelidae antibody raised by
active immunisation with a target antigen, or otherwise encoded by
a camelid gene, are grafted onto a human VH and VL framework, with
the remainder of the antibody also being of fully human origin.
However, given the high degree of amino acid sequence homology and
structural homology they have observed between Camelidae and human
immunoglobulins, the inventors anticipate that in the majority of
cases it will be possible to achieve the levels of human homology
required for in vivo therapeutic use via "humanisation" of the
framework regions of camelid-derived VH and VL domains without the
need for CDR grafting or via CDR grafting on to limited number of
backbone sequences without the need for veneering (also see Almagro
et al, Frontiers in Bioscience 13: 1619-1633 (2008), the contents
of which are incorporated herein by reference).
[0132] Humanised, chimeric and CDR-grafted antibodies according to
the invention, particularly antibodies comprising hypervariable
loops derived from active immunisation of Camelidae with a target
antigen, can be readily produced using conventional recombinant DNA
manipulation and expression techniques, making use of prokaryotic
and eukaryotic host cells engineered to produce the polypeptide of
interest and including but not limited to bacterial cells, yeast
cells, mammalian cells, insect cells, plant cells, some of them as
described herein and illustrated in the accompanying examples.
[0133] The invention also encompasses antigen binding polypeptides
wherein either one or other of the VH or VL domain is obtained from
Camelidae, or contains at least one CDR or hypervariable region
derived from Camelidae, and the "other" variable domain has
non-camelid, e.g. human, amino acid sequence. Thus, it is
contemplated to pair a camelid VH domain with a human VL domain, or
to pair a human VH domain with a camelid VL domain. Such pairings
may increase the available antigen-binding repertoire from which to
select high affinity binders with the desired antigen binding
properties.
[0134] The invention still further extends to antigen binding
polypeptides wherein the hypervariable loop(s) or CDR(s) of the VH
domain and/or the VL domain are obtained from Camelidae, but
wherein at least one of said (camelid-derived) hypervariable loops
or CDRS has been engineered to include one or more amino acid
substitutions, additions or deletions relative to the
camelid-encoded sequence. Such changes include "humanisation" of
the hypervariable loops/CDRs. Camelid-derived HVs/CDRs which have
been engineered in this manner may still exhibit an amino acid
sequence which is "substantially identical" to the amino acid
sequence of a camelid-encoded HV/CDR. In this context, "substantial
identity" may permit no more than one, or no more than two amino
acid sequence mis-matches with the camelid-encoded HV/CDR.
[0135] Antibodies according to the invention may be of any isotype.
Antibodies intended for human therapeutic use will typically be of
the IgA, IgD, IgE IgG, IgM type, often of the IgG type, in which
case they can belong to any of the four sub-classes IgG1, IgG2a and
b, IgG3 or IgG4. Within each of these sub-classes it is permitted
to make one or more amino acid substitutions, insertions or
deletions within the Fc portion, or to make other structural
modifications, for example to enhance or reduce Fc-dependent
functionalities.
[0136] Antigen binding polypeptides according to the invention may
be useful in a wide range of applications, both in research and in
the diagnosis and/or treatment of diseases. Because of the high
degree of amino acid sequence identity with the VH and VL domains
of natural human antibodies, and the high degree of structural
homology (specifically the correct combinations of canonical folds
as are found in human antibodies) the antigen binding polypeptides
of the invention, particularly in the form of monoclonal
antibodies, will find particular utility as human therapeutic
agents.
[0137] The invention provides a platform for production of antigen
binding polypeptides, and specifically monoclonal antibodies,
against a wide range of antigens and in its broadest aspect the
invention is not intended to be limited with respect to the exact
identity of the target antigen, nor indeed the specificity or
affinity of binding to the target antigen. However, in particular,
non-limiting, embodiments the target antigen may be a non-camelid
antigen, a bacterial antigen, a viral antigen or a human antigen.
In a preferred embodiment the target antigen may be an antigen of
particular therapeutic importance. The term "target of therapeutic
importance" refers to a target involved in formation, onset,
progression, mediation of human or animal diseases or of the
effects related to the respective disease. Included within this
definition are targets wherein the expression levels and/or
activity of the target are modulated by antibody binding (e.g.
receptors whose activity may be modulated by binding of agonist or
antagonist antibodies), and targets wherein the activity and/or
expression of the target has a direct or indirect impact on a
disease.
[0138] By way of example, "human antigens" may include naturally
occurring human polypeptides (proteins) which function as
receptors, receptor ligands, cell-signalling molecules, hormones,
cytokines or cytokine receptors, neurotransmitters, etc. By
"naturally occurring" is meant that the polypeptide is expressed
within the human body, at any stage if its development, including
polypeptides expressed by the human body during the course of a
disease.
[0139] Non-limiting embodiments of the antigen binding polypeptide
of the invention include the following:
[0140] A chimeric antigen binding polypeptide comprising a VH
domain and a VL domain, wherein at least one hypervariable loop or
complementarity determining region (CDR) in the VH domain or the VL
domain is obtained from a VH or VL domain of a species in the
family Camelidae. In a particular embodiment both the VH domain and
the VL domain are obtained from Llama (Lama glama).
[0141] A recombinantly expressed antigen binding polypeptide
comprising a VH domain and a VL domain, wherein at least one
hypervariable loop or complementarity determining region (CDR) in
the VH domain or the VL domain is obtained from a VH or VL domain
of a species in the family Camelidae. In a particular embodiment
both the VH domain and the VL domain are obtained from Llama (Lama
glama).
[0142] A monoclonal antibody comprising a VH domain and a VL
domain, wherein at least one hypervariable loop or complementarity
determining region (CDR) in the VH domain or the VL domain is
obtained from a VH or VL domain of a species in the family
Camelidae.
[0143] In a particular embodiment both the VH domain and the VL
domain are obtained from Llama (Lama glama).
[0144] An antigen binding polypeptide comprising a VH domain and a
VL domain, wherein at least one hypervariable loop or
complementarity determining region (CDR) in the VH domain or the VL
domain is obtained from a VH or VL domain of a species in the
family Camelidae and wherein said antigen binding polypeptide is
immunoreactive with a target antigen of therapeutic or diagnostic
importance. In a particular embodiment both the VH domain and the
VL domain are obtained from Llama (Lama glama).
[0145] A chimeric antigen binding polypeptide comprising or
consisting of a VH domain of a conventional antibody of a camelid
(in particular Llama or alpaca), a VL domain of a conventional
antibody of a camelid (in particular Llama or alpaca) and one or
more constant domains of a human antibody. In a particular
embodiment both the VH domain and the VL domain are obtained from
Llama (Lama glama).
[0146] A chimeric antigen binding polypeptide immunoreactive with a
target antigen of therapeutic or diagnostic importance, which
antigen binding polypeptide comprises or consists of a VH domain of
a conventional antibody of a camelid (in particular Llama or
alpaca), a VL domain of a conventional antibody of a camelid (in
particular Llama or alpaca) and one or more constant domains of a
human antibody. In a particular embodiment both the VH domain and
the VL domain are obtained from Llama (Lama glama).
[0147] A chimeric antibody comprising or consisting of a VH domain
of a conventional antibody of a camelid (in particular Llama or
alpaca), a VL domain of a conventional antibody of a camelid (in
particular Llama or alpaca) and the constant domains of a human
antibody of an isotype selected from the group consisting of: IgG,
IgM, IgD, IgE and IgA. In a particular embodiment both the VH
domain and the VL domain are obtained from Llama (Lama glama).
[0148] A chimeric antigen binding polypeptide immunoreactive with a
target antigen of therapeutic or diagnostic importance, which
antigen binding polypeptide comprises or consists of a VH domain of
a conventional antibody of a camelid (in particular Llama or
alpaca), a VL domain of a conventional antibody of a camelid (in
particular Llama or alpaca) and the constant domains of a human
antibody of an isotype selected from the group consisting of: IgG,
IgM, IgD, IgE, IgA. In a particular embodiment both the VH domain
and the VL domain are obtained from Llama (Lama glama).
[0149] In particular embodiments of the foregoing, both the VH and
the VL domain may be from the same species of camelid (in
particular Llama or alpaca), and may even be from the same animal
within this species, for example a single animal which has been
actively immunised. In particular, both the VH domain and the VL
domain may be obtained from a single actively immunised Llama.
However, it is not excluded that the VH and VL domain may be
obtained from different animals, or non-immune libraries.
[0150] In the foregoing embodiments, the terms "VH domain of a
conventional antibody of a camelid" and "VL domain of a
conventional antibody of a camelid" are intended to encompass
variants which have been engineered to introduce one or more
changes in amino acid sequence, such as variants which have been
"humanised" or "germlined" in one or more framework regions, as
described elsewhere herein, and also encompass the products of
synthetic (e.g. codon-optimised) genes, as described elsewhere
herein.
Polynucleotides, Vectors and Recombinant Expression
[0151] The invention also provides a polynucleotide molecule
encoding the antigen binding polypeptide of the invention, an
expression vector containing a nucleotide sequence encoding the
antigen binding polypeptide of the invention operably linked to
regulatory sequences which permit expression of the antigen binding
polypeptide in a host cell or cell-free expression system, and a
host cell or cell-free expression system containing this expression
vector.
[0152] Polynucleotide molecules encoding the antigen binding
polypeptide of the invention include, for example, recombinant DNA
molecules.
[0153] The terms "nucleic acid", "polynucleotide" or a
"polynucleotide molecule" as used herein interchangeably and refer
to any DNA or RNA molecule, either single- or double-stranded and,
if single-stranded, the molecule of its complementary sequence. In
discussing nucleic acid molecules, a sequence or structure of a
particular nucleic acid molecule may be described herein according
to the normal convention of providing the sequence in the 5' to 3'
direction. In some embodiments of the invention, nucleic acids or
polynucleotides are "isolated." This term, when applied to a
nucleic acid molecule, refers to a nucleic acid molecule that is
separated from sequences with which it is immediately contiguous in
the naturally occurring genome of the organism in which it
originated. For example, an "isolated nucleic acid" may comprise a
DNA molecule inserted into a vector, such as a plasmid or virus
vector, or integrated into the genomic DNA of a prokaryotic or
eukaryotic cell or non-human host organism. When applied to RNA,
the term "isolated polynucleotide" refers primarily to an RNA
molecule encoded by an isolated DNA molecule as defined above.
Alternatively, the term may refer to an RNA molecule that has been
purified/separated from other nucleic acids with which it would be
associated in its natural state (i.e., in cells or tissues). An
isolated polynucleotide (either DNA or RNA) may further represent a
molecule produced directly by biological or synthetic means and
separated from other components present during its production.
[0154] For recombinant production of an antigen binding polypeptide
according to the invention, a recombinant polynucleotide encoding
it may be prepared (using standard molecular biology techniques)
and inserted into a replicable vector for expression in a chosen
host cell, or a cell-free expression system. Suitable host cells
may be prokaryote, yeast, or higher eukaryote cells, specifically
mammalian cells. Examples of useful mammalian host cell lines are
monkey kidney CV1 line transformed by SV40 (COS-7, ATCC CRL 1651);
human embryonic kidney line (293 or 293 cells subcloned for growth
in suspension culture, Graham et al., J. Gen. Virol. 36:59 (1977));
baby hamster kidney cells (BHK, ATCC CCL 10); Chinese hamster ovary
cells/-DHFR (CHO, Urlaub et al., Proc. Natl. Acad. Sci. USA 77:4216
(1980)); mouse sertoli cells (TM4, Mather, Biol. Reprod. 23:243-251
(1980)); mouse myeloma cells SP2/0-AG14 (ATCC CRL 1581; ATCC CRL
8287) or NS0 (HPA culture collections no. 85110503); monkey kidney
cells (CV1 ATCC CCL 70); African green monkey kidney cells
(VERO-76, ATCC CRL-1587); human cervical carcinoma cells (HELA,
ATCC CCL 2); canine kidney cells (MDCK, ATCC CCL 34); buffalo rat
liver cells (BRL 3A, ATCC CRL 1442); human lung cells (W138, ATCC
CCL 75); human liver cells (Hep G2, HB 8065); mouse mammary tumor
(MMT 060562, ATCC CCL51); TRI cells (Mather et al., Annals N.Y.
Acad. Sci. 383:44-68 (1982)); MRC 5 cells; FS4 cells; and a human
hepatoma line (Hep G2), as well as DSM's PERC-6 cell line.
Expression vectors suitable for use in each of these host cells are
also generally known in the art.
[0155] It should be noted that the term "host cell" generally
refers to a cultured cell line. Whole human beings into which an
expression vector encoding an antigen binding polypeptide according
to the invention has been introduced are explicitly excluded from
the scope of the invention.
[0156] In an important aspect, the invention also provides a method
of producing a recombinant antigen binding polypeptide which
comprises culturing a host cell (or cell free expression system)
containing polynucleotide (e.g. an expression vector) encoding the
recombinant antigen binding polypeptide under conditions which
permit expression of the antigen binding polypeptide, and
recovering the expressed antigen binding polypeptide. This
recombinant expression process can be used for large scale
production of antigen binding polypeptides according to the
invention, including monoclonal antibodies intended for human
therapeutic use. Suitable vectors, cell lines and production
processes for large scale manufacture of recombinant antibodies
suitable for in vivo therapeutic use are generally available in the
art and will be well known to the skilled person.
[0157] Further aspects of the invention relate to test kits,
including diagnostic kits etc. comprising an antigen binding
polypeptide according to the invention, and also pharmaceutical
formulations comprising an antigen binding polypeptide according to
the invention.
[0158] Where the antigen binding polypeptide is intended for
diagnostic use, for example where the antigen binding polypeptide
is specific for an antigen which is a biomarker of a disease state
or a disease susceptibility, then it may be convenient to supply
the antigen binding polypeptide as a component of a test kit.
Diagnostic tests typically take the form of standard immunoassays,
such as ELISA, radioimmunoassay, Elispot, etc. The components of
such a test kit may vary depending on the nature of the test or
assay it is intended to carry out using the antigen binding
polypeptide of the invention, but will typically include additional
reagents required to carry out an immunoassay using the antigen
binding polypeptide of the invention. Antigen binding polypeptides
for use as diagnostic reagents may carry a revealing label, such as
for example a fluorescent moiety, enzymatic label, or
radiolabel.
[0159] Antigen binding polypeptides intended for in vivo
therapeutic use are typically formulated into pharmaceutical dosage
forms, together with one or more pharmaceutically acceptable
diluents, carriers or excipients (Remington's Pharmaceutical
Sciences, 16th edition., Osol, A. Ed. 1980). Antigen binding
polypeptides according to the invention are typically formulated as
sterile aqueous solutions, to be administered intravenously, or by
intramuscular, intraperitoneal, intra-cerebrospinal, intratumoral,
oral, peritumoral, subcutaneous, intra-synovial, intrathecal,
topical, sublingual or inhalation routes, to a mammalian subject,
typically a human patient, in need thereof. For the prevention or
treatment of disease, the appropriate dosage of antigen binding
polypeptide will depend on the type of disease to be treated, the
severity and clinical course of the disease, plus the patient's
age, weight and clinical history, and will be determined by the
judgement of the attending physician.
Processes for the Production of Antigen Binding Polypeptides
[0160] A key aspect of the present invention relates to processes
for the production of high affinity antigen binding polypeptides,
and specifically monoclonal antibodies, against a target antigen of
interest.
[0161] Accordingly, the invention provides a process for preparing
an antigen binding polypeptide immunoreactive with a target
antigen, said process comprising: [0162] (a) determining the
nucleotide sequence encoding at least one hypervariable loop or
complementarity determining region (CDR) of the VH and/or the VL
domain of a Camelidae conventional antibody immunoreactive with
said target antigen; and [0163] (b) expressing an antigen binding
polypeptide immunoreactive with said target antigen, said antigen
binding polypeptide comprising a VH and a VL domain, wherein at
least one hypervariable loop or complementarity determining region
(CDR) of the VH domain or the VL domain has an amino acid sequence
encoded by the nucleotide sequence determined in part (a).
[0164] In one embodiment, the antigen binding polypeptide expressed
in part (b) is not identical to the Camelidae conventional antibody
of part (a).
[0165] In one non-limiting embodiment, the invention provides a
process for preparing a recombinant antigen binding polypeptide
that is immunoreactive with (or specifically binds to) a target
antigen, said an antigen binding polypeptide comprising a VH domain
and a VL domain, wherein at least one hypervariable loop or
complementarity determining region (CDR) in the VH domain or the VL
domain is obtained from a species in the family Camelidae, said
process comprising the steps of: [0166] (a) isolating Camelidae
nucleic acid encoding at least one hypervariable loop or
complementarity determining region (CDR) of the VH and/or the VL
domain of a Camelidae conventional antibody immunoreactive with
said target antigen; [0167] (b) preparing a recombinant
polynucleotide comprising a nucleotide sequence encoding
hypervariable loop(s) or complementarity determining region(s)
having amino acid sequence identical to the hypervariable loop(s)
or complementarity determining region(s) encoded by the nucleic
acid isolated in step (a), which recombinant polynucleotide encodes
an antigen binding polypeptide comprising a VH domain and a VL
domain that is immunoreactive with (or specifically binds to) said
target antigen; and [0168] (c) expressing said antigen binding
polypeptide from the recombinant polynucleotide of step (b).
[0169] In one embodiment, the antigen binding polypeptide expressed
in part (c) is not identical to the Camelidae conventional antibody
of part (a).
[0170] The foregoing methods may be referred to herein as "general
processes" for preparing antigen binding polypeptides.
[0171] The first step of either process may involve active
immunisation of a species in the family Camelidae in order to
elicit an immune response against the target antigen, thereby
raising camelid conventional antibodies immunoreactive with the
target antigen. Protocols for immunisation of camelids are
described in the accompanying examples. The antigen preparation
used for immunisation may be a purified form of the target antigen,
for example recombinantly expressed polypeptide, or an immunogenic
fragment thereof. However, it is also possible to immunise with
crude preparations of the antigen, such as like isolated cells or
tissue preparations expressing or encoding the target antigen, cell
lysates, cell supernatants or fractions such as cell membranes,
etc., or with a polynucleotide encoding said target antigen (a DNA
immunisation).
[0172] The process will typically involve immunisation of animals
of a Camelidae species (including, but limited to, llamas and
alpacas), and advantageously these animals will belong to an
outbred population. However, it is also contemplated to use
transgenic animals (e.g. transgenic mice) containing the Camelid
conventional Ig locus, or at least a portion thereof.
[0173] A topic of increasing interest seems to be the difference
between the complementarity determining regions (CDRs) of in vivo
and in vitro generated antibodies. The inventors surmise that the
in vivo selection has a favourable impact on the immunogenicity,
functionality, stability and therefore improved manufacturability
of the resulting antibodies, whilst synthetic CDRs generated and
selected in vitro may have a disadvantage from this point of view.
This is important since a given therapeutic antibody risks to be
neutralized by the so called anti-idiotypic antibody response from
the patient (Lonberg, Nature Biotechnology, 23: 1117-1125,
(2005)).
[0174] A key advantage of processes according to the invention
based on active immunisation of camelids stems from the fact that
all species of Camelidae can be maintained in large outbred
populations where the individual animals have a different genetic
background. It is therefore possible to use active immunisation to
elicit a strong and diverse immune response against the antigen of
interest from which a diverse pool of potential antigen binding
molecules can be obtained. As illustrated in the accompanying
examples, the present inventors have observed that active
immunisation of camelids can generate Fab fragments binding to a
target antigen with a high degree of immunodiversity. Without
wishing to be bound by theory, the inventors surmise that the
phylogenetic distance between humans and camelids may be important
for production of a diverse immune response against a given target
antigen. In contrast, the non-human primates are phylogenetically
close to humans, thus targets with high homology between non-human
primates and humans may elicit only a limited immune response in
terms of strength and diversity in non-human primates.
[0175] The ability to use active immunisation in an outbred
population which is phylogenetically distant from human would not
be particularly advantageous if the antibodies so-produced were to
exhibit a low sequence and structural homology with human
antibodies such that substantial "protein engineering" would be
required to create a candidate antibody with therapeutic potential.
It is therefore extremely important that the inventors have shown
that the Camelidae germline (and somatically mutated sequences)
encodes both VH and VL domains with a very high degree of sequence
and structural homology with human VH and VL domains (as explained
above). This high degree of homology in combination with the
availability of large outbred populations results in a very
powerful platform for development of monoclonal antibodies for use
as human therapeutics.
[0176] Following active immunisation with the target antigen,
peripheral blood lymphocytes or biopsies such as lymph nodes or
spleen biopsies may be isolated from the immunised animal and
screened for production of conventional camelid antibodies against
the target antigen. Techniques such as enrichment using panning or
FACS sorting may be used at this stage to reduce the complexity of
the B cell repertoire to be screened, as illustrated in the
examples. Antigen-specific B cells are then selected and used for
total RNA extraction and subsequent cDNA synthesis. Nucleic acid
encoding the native camelid VH and VL domains (specific for the
target antigen) can be isolated by PCR.
[0177] It is not essential to use active immunisation in order to
identify camelid convention antibodies immunoreactive with a target
of interest. In other embodiments it may be possible to make use of
the camelid's own immune response, either the immunodiversity
naturally present in the animal, or for example a diseased animal
or animal which has been naturally exposed to a particular
pathogen, e.g. by normal infection routes. In this regard, the
invention encompasses the use of non-immune libraries. If "natural"
immune responses within the camelid already give rise to antibodies
which bind the target antigen of interest, then it is possible to
make use of the genetic engineering techniques described herein,
and other standard techniques known in the art, in order to culture
and isolate B cells producing such antibodies, or produce
monoclonal cultures of such antibodies, and/or to determine the
nucleotide sequence of the camelid gene segments encoding the VH
and/or VL domains of such antibodies. Armed with this sequence
information, it is then possible to engineer recombinant DNA
constructs encoding antigen binding polypeptides which embody the
camelid derived VH and/or VL, or the hypervariable loops (or CDRs)
thereof.
[0178] Nucleic acid encoding camelid VH and VL domains (whether
obtained by active immunisation or by other means) may be cloned
directly into an expression vector for the production of an antigen
binding polypeptide according to the invention. In particular,
these sequences could be cloned into an expression vector which
also encodes a human antibody constant region, or a portion
thereof, in order to produce a chimeric antibody. However, it is
typical to carry out further manipulations on the isolated camelid
VH and VL sequences before cloning and expression with human
constant region sequences.
[0179] As a first step, candidate camelid VH and VL sequences
(including sequences isolated following the active immunisation)
may be used to prepare a camelid libraries (e.g. Fab libraries, as
described in the accompanying examples). The library may then be
screened (e.g. using phage display) for binding to the target
antigen. Promising lead candidates can be further tested for target
antigen binding, for example using Biacore or a suitable bioassay.
Finally, the sequences encoding the VH and VL domains of the most
promising leads can be cloned as an in-frame fusion with sequences
encoding a human antibody constant region.
[0180] It is not essential that the polynucleotide sequence used to
encode the (camelid-derived) HVs/CDRs (e.g. for recombinant
expression of the antigen binding polypeptide of the invention) is
identical to the native polynucleotide sequence which naturally
encodes the HVs/CDRs in the camelid. Therefore, the invention
encompasses/permits codon optimisation, and other changes in
polynucleotide sequence related to cloning and/or expression, which
do not alter the encoded amino acid sequence.
[0181] In certain embodiments, "chain shuffling" may be performed
in which a particular variable domain known to bind the antigen of
interest is paired with each of a set of variable domains of the
opposite type (i.e. VH paired with VL library or vice versa), to
create libraries, and the resulting "promiscuous" combinations of
VH/VL tested for antigen binding affinity and/or specificity.
Alternatively, a library of VH domains could be paired with a
library of VL domains, either randomly or in a hierarchical manner,
and the resulting combinations tested (see Clackson et al.,
Nature., Vol. 352. pp 624-638, 1991). In this process, the
libraries may be libraries of rearranged VH and VL (V.kappa. or
V.lamda.) from camelids which display immunity to the antigen of
interest (including animals which have been actively immunised).
The chain shuffling process can increase immunodiversity and
produce pairings with significantly enhanced affinity.
[0182] The invention also contemplates performing epitope imprinted
selection (so-called "guided selection") starting from a camelid VH
or VL domain, wherein the other variable domain is taken from a
non-camelid species, e.g. human. Thus, in one embodiment a camelid
VH domain may be "shuffled" with a library of human-encoded VL
domains, to replace the native camelid-encoded VL domain, resulting
in camelid VH/human VL pairings. One or more of these pairings may
then be subjected a second chain shuffling step in which the human
VL domain is shuffled against a library of VH domains, which may be
human-encoded. This second step may produce human-encoded VH/VL
combinations which have the epitope imprint of the original
camelid-encoded VH/VL combination.
[0183] Also included within the scope of the invention is the
reverse "chain shuffling" process, starting with non-camelid
(preferably human)-encoded VH/VL domain combination which binds to
an antigen of interest. This could be, for example, a fully human
therapeutic antibody against a validated disease target. Starting
from this VH/VL combination, it is possible to carry out a first
round of selection in which the VH domain is "shuffled" with a
library of camelid-encoded VL domains (or vice versa), and the
pairings tested for antigen binding. Selected non-camelid (e.g.
human) VH/camelid VL pairings may then be subjected to a second
round of selection in which the camelid-encoded VL is shuffled
against a library of camelid-encoded VH, and the resulting pairings
tested for antigen binding. As a result, it may be possible to
produce a camelid VH/camelid VL combination which carries the
epitope imprint of the starting VH/VL combination. This camelid
VH/VL combination could be further engineered/modified and combined
with human-encoded constant domains as required, using any of the
processes described herein.
[0184] In the processes of the invention, "native" camelid-derived
VH and VL domains may be subject to protein engineering in which
one or more selective amino acid substitutions are introduced,
typically in the framework regions. The reasons for introducing
such substitutions into the "wild type" camelid sequence can be (i)
humanisation of the framework region, (ii) improvement in
stability, bioavailability, product uniformity, tissue penetration,
etc., or (iii) optimisation of target antigen binding.
[0185] "Humanisation" of camelid-derived VH and VL domains by
selective replacement of one or more amino acid residues in the
framework regions may be carried out according to well-established
principles (as illustrated in the accompanying examples, and
reviewed by Almagro et al. Frontiers in Bioscience 13:1619-1633
(2008), the contents of which are specifically incorporated herein
by reference). It will be appreciated that the precise identity of
the amino acid changes made to achieve acceptable "humanisation" of
any given VH domain, VL domain or combination thereof will vary on
a case-by-case basis, since this will depend upon the sequence of
the framework regions derived from Camelidae and the starting
homology between these framework regions and the closest aligning
human germline (or somatically mutated) framework region, and
possible also on the sequence and conformation of the hypervariable
loops which form the antigen binding site.
[0186] The overall aim of humanisation is to produce a molecule in
which the VH and VL domains exhibit minimal immunogenicity when
introduced into a human subject, whilst retaining the specificity
and affinity of the antigen binding site formed by the parental VH
and VL domains encoded by Camelidae (e.g. camelid VH/VL obtained by
active immunisation). There are a number of established approaches
to humanisation which can be used to achieve this aim. Techniques
can be generally classified as either rational approaches or
empirical approaches. Rational approaches include CDR-grafting,
resurfacing or veneering, superhumanization and human string
content optimisation. Empirical approaches include the FR library
approach, guided selection, FR shuffling and humaneering. All of
these techniques are reviewed in Almagro, Frontiers in Bioscience
2008, ibid. and any of these techniques, or combinations or
modifications thereof, can be used to prepare "humanised" antigen
binding polypeptides according to the invention.
Methods of Library Construction
[0187] In a related aspect, the invention also encompasses a method
of producing a library of expression vectors encoding VH and/or VL
domains of camelid conventional antibodies, said method comprising
the steps:
a) amplifying regions of nucleic acid molecules encoding VH and/or
VL domains of camelid conventional antibodies to obtain amplified
gene segments, each gene segment containing a sequence of
nucleotides encoding a VH domain or a sequence of nucleotides
encoding a VL domain of a camelid conventional antibody, and b)
cloning the gene segments obtained in a) into expression vectors,
such that each expression vector contains at least a gene segment
encoding a VH domain and/or a gene segment encoding a VL domain,
whereby a library of expression vectors is obtained.
[0188] The above methods of "library construction" may also form
part of the general process for production of antigen binding
polypeptides of the invention, described above. Hence, any feature
described as being preferred or advantageous in relation to this
aspect of the invention may also be taken as preferred or
advantageous in relation to the general process, and vice versa,
unless otherwise stated.
[0189] In one embodiment, the nucleic acid amplified in step a)
comprises cDNA or genomic DNA prepared from lymphoid tissue of a
camelid, said lymphoid tissue comprising one or more B cells, lymph
nodes, spleen cells, bone marrow cells, or a combination thereof.
Circulating B cells are particularly preferred. The present
inventors have surprisingly found that peripheral blood lymphocytes
(PBLs) can be used as a source of nucleic acid encoding VH and VL
domains of conventional camelid antibodies, i.e. there is
sufficient quantity of plasma cells (expressing antibodies) present
in a sample of PBLs to enable direct amplification. This is
advantageous because PBLs can be prepared from a whole blood sample
taken from the animal (camelid). This avoids the need to use
invasive procedures to obtain tissue biopsies (e.g. from spleen or
lymph node), and means that the sampling procedure can be repeated
as often as necessary, with minimal impact on the animal. For
example, it is possible to actively immunise the camelid, remove a
first blood sample from the animal and prepare PBLs, then immunise
the same animal a second time, either with a "boosting" dose of the
same antigen or with a different antigen, then remove a second
blood sample and prepare PBLs.
[0190] Accordingly, a particular embodiment of this method of the
invention may involve: preparing a sample containing PBLs from a
camelid, preparing cDNA or genomic DNA from the PBLs and using this
cDNA or genomic DNA as a template for amplification of gene
segments encoding VH or VL domains of camelid conventional
antibodies.
[0191] In one embodiment the lymphoid tissue (e.g. circulating B
cells) is obtained from a camelid which has been actively
immunised, as described elsewhere herein. However, this embodiment
is non-limiting and it is also contemplated to prepare non-immune
libraries and libraries derived from lymphoid tissue of diseased
camelids, also described elsewhere herein.
[0192] Conveniently, total RNA (or mRNA) can be prepared from the
lymphoid tissue sample (e.g. peripheral blood cells or tissue
biopsy) and converted to cDNA by standard techniques. It is also
possible to use genomic DNA as a starting material.
[0193] This aspect of the invention encompasses both a diverse
library approach, and a B cell selection approach for construction
of the library. In a diverse library approach, repertoires of VH
and VL-encoding gene segments may be amplified from nucleic acid
prepared from lymphoid tissue without any prior selection of B
cells. In a B cell selection approach, B cells displaying
antibodies with desired antigen-binding characteristics may be
selected, prior to nucleic acid extraction and amplification of VH
and VL-encoding gene segments.
[0194] Various conventional methods may be used to select camelid B
cells expressing antibodies with desired antigen-binding
characteristics. For example, B cells can be stained for cell
surface display of conventional IgG with fluorescently labelled
monoclonal antibody (mAb, specifically recognizing conventional
antibodies from llama or other camelids) and with target antigen
labelled with another fluorescent dye. Individual double positive B
cells may then be isolated by FACS, and total RNA (or genomic DNA)
extracted from individual cells. Alternatively cells can be
subjected to in vitro proliferation and culture supernatants with
secreted IgG can be screened, and total RNA (or genomic DNA)
extracted from positive cells. In a still further approach,
individual B cells may be transformed with specific genes or fused
with tumor cell lines to generate cell lines, which can be grown
"at will", and total RNA (or genomic DNA) subsequently prepared
from these cells.
[0195] Instead of sorting by FACS, target specific B cells
expressing conventional IgG can be "panned" on immobilized
monoclonal antibodies (directed against camelid conventional
antibodies) and subsequently on immobilized target antigen. RNA (or
genomic DNA) can be extracted from pools of antigen specific B
cells or these pools can be transformed and individual cells cloned
out by limited dilution or FACS.
[0196] B cell selection methods may involve positive selection, or
negative selection.
[0197] Whether using a diverse library approach without any B cell
selection, or a B cell selection approach, nucleic acid (cDNA or
genomic DNA) prepared from the lymphoid tissue is subject to an
amplification step in order to amplify gene segments encoding
individual VH domains or VL domains.
[0198] Total RNA extracted from the lymphoid tissue (e.g.
peripheral B cells or tissue biopsy) may be converted into random
primed cDNA or oligo dT primer can be used for cDNA synthesis,
alternatively Ig specific oligonucleotide primers can be applied
for cDNA synthesis, or mRNA (i.e. poly A RNA) can be purified from
total RNA with oligo dT cellulose prior to cDNA synthesis. Genomic
DNA isolated from B cells can be used for PCR.
[0199] PCR amplification of heavy chain and light chain (kappa and
lambda) gene segments encoding at least VH or VL can be performed
with FR1 primers annealing to the 5' end of the variable region in
combination with primers annealing to the 3' end of CH1 or
Ckappa/Clambda region with the advantage that for these constant
region primers only one primer is needed for each type. This
approach enables camelid Fabs to be cloned. Alternatively sets of
FR4 primers annealing to the 3' end of the variable regions can be
used, again for cloning as Fabs (fused to vector encoded constant
regions) or as scFv (single chain Fv, in which the heavy and light
chain variable regions are linked via a flexible linker sequence);
alternatively the variable regions can be cloned in expression
vectors allowing the production of full length IgG molecules
displayed on mammalian cells.
[0200] In general the amplification is performed in two steps; in
the first step with non-tagged primers using a large amount of cDNA
(to maintain diversity) and in the second step the amplicons are
re-amplified in only a few cycles with tagged primers, which are
extended primers with restriction sites introduced at the 5' for
cloning. Amplicons produced in the first amplification step
(non-tagged primers) may be gel-purified to remove excess primers,
prior to the second amplification step. Alternatively, promoter
sequences may be introduced, which allow transcription into RNA for
ribosome display. Instead of restriction sites recombination sites
can be introduced, like the Cre-Lox or TOPO sites, that permit the
site directed insertion into appropriate vectors.
[0201] Amplified gene segments encoding camelid conventional VH and
VL domains may then be cloned into vectors suitable for expression
of VH/VL combinations as functional antigen binding polypeptides.
By way of example, amplified VHCH1/VKCK/VLCL gene segments from
pools of B cells (or other lymphoid tissue not subject to any B
cell selection) may be first cloned separately as individual
libraries (primary libraries), then in a second step Fab or scFV
libraries may be assembled by cutting out the light chain fragments
and ligating these into vectors encoding the heavy chain fragments.
The two step procedure supports the generation of large libraries,
because the cloning of PCR products is relatively inefficient (due
to suboptimal digestion with restriction enzymes). scFv encoding
DNA fragments can be generated by splicing-by-overlap extension PCR
(SOE) based on a small overlap in sequence in amplicons; by mixing
VH and VL encoding amplicons with a small DNA fragment encoding the
linker in a PCR a single DNA fragment is formed due to the
overlapping sequences.
[0202] Amplicons comprising VH and VL-encoding gene segments can be
cloned in phage or phagemid vectors, allowing selection of target
specific antibody fragments by using phage display based selection
methods. Alternatively amplicons can be cloned into expression
vectors which permit display on yeast cells (as Fab, scFv or full
length IgG) or mammalian cells (as IgG).
[0203] In other embodiments, cloning can be avoided by using the
amplicons for ribosome display, in which a T7 (or other) promoter
sequence and ribosome binding site is included in the primers for
amplification. After selection for binding to target antigen, pools
are cloned and individual clones are analyzed. In theory, larger
immune repertoires can be sampled using this approach as opposed to
a phage display library approach, because cloning of libraries and
selection with phage is limited to 10.sup.10 to 10.sup.12
clones.
[0204] When applying B cell sorting, amplicons contain VH or
VL-encoding gene segments of individual target specific B cells can
be cloned directly into bacterial or mammalian expression vectors
for the production of antibody fragments (scFVs or Fabs) or even
full length IgG.
[0205] In a particular, non-limiting, embodiment of the "library
construction" process, the invention provides a method of producing
a library of expression vectors encoding VH and VL domains of
camelid conventional antibodies, said method comprising the
steps:
a) actively immunising a camelid, thereby raising conventional
camelid antibodies against a target antigen; b) preparing cDNA or
genomic DNA from a sample comprising lymphoid tissue (e.g.
circulating B cells) from said immunised camelid (including, but
not limited to, Llama or alpaca); c) amplifying regions of said
cDNA or genomic DNA to obtain amplified gene segments, each gene
segment comprising a sequence of nucleotides encoding a VH domain
or a sequence of nucleotides encoding a VL domain of a camelid
conventional antibody; and d) cloning the gene segments obtained in
c) into expression vectors, such that each expression vector
contains a gene segment encoding a VH domain and a gene segment
encoding a VL domain and directs expression of an antigen binding
polypeptide comprising said VH domain and said VL domain, whereby a
library of expression vectors is obtained.
[0206] The foregoing methods may be used to prepare libraries of
camelid-encoded VH and VL domains (in particular Llama and alpaca
VH and VL domains), suitable for expression of VH/VL combinations
as functional antigen-binding polypeptides, e.g. in the form of
scFVs, Fabs or full-length antibodies.
[0207] Libraries of expression vectors prepared according to the
foregoing process, and encoding camelid (including but not limited
to Llama or alpaca) VH and VL domains, also form part of the
subject-matter of the present invention.
[0208] In a particular embodiment the invention provides a library
of phage vectors encoding Fab or scFV molecules, wherein each Fab
or scFV encoded in the library comprises a VH domain of a camelid
conventional antibody and a VL domain of a camelid conventional
antibody.
[0209] In one embodiment the library is a "diverse" library, in
which the majority of clones in the library encode VH domains of
unique amino acid sequence, and/or VL domains of unique amino acid
sequence, including diverse libraries of camelid VH domains and
camelid VL domains. Therefore, the majority (e.g. >90%) of
clones in a diverse library encode a VH/VL pairing which differs
from any other VH/VL pairing encoded in the same library with
respect to amino acid sequence of the VH domain and/or the VL
domain.
[0210] The invention also encompasses expression vectors containing
VH and VL-encoding gene segments isolated from a single selected B
cell of a camelid (e.g. Llama or alpaca).
[0211] In a further aspect, the present invention also provides a
method of selecting an expression vector encoding an antigen
binding polypeptide immunoreactive with a target antigen, the
method comprising steps of:
i) providing a library of expression vectors, wherein each vector
in said library comprises a gene segment encoding a VH domain and a
gene segment encoding a VL domain, wherein at least one of said VH
domain or said VL domain is from a camelid conventional antibody,
and wherein each vector in said library directs expression of an
antigen binding polypeptide comprising said VH domain and VL
domain; ii) screening antigen binding polypeptides encoded by said
library for immunoreactivity with said target antigen, and thereby
selecting an expression vector encoding an antigen binding
polypeptide immunoreactive with said target antigen.
[0212] This method of the invention encompasses screening/selection
of clones immunoreactive with target antigen, from a library of
clones encoding VH/VL pairings. The method may also encompass
library construction, which may be carried out using the library
construction method described above. Optional downstream
processing/optimisation steps may be carried out on selected
clones, as described below. This method of selection and screening,
may also form part of the general process for production of antigen
binding polypeptides of the invention, described above. Hence, any
feature described as being preferred or advantageous in relation to
this aspect of the invention may also be taken as preferred or
advantageous in relation to the general process, and vice versa,
unless otherwise stated.
Screening and Selection of Clones Immunoreactive with Target
Antigen
[0213] Screening/selection typically involves contacting expression
products encoded by clones in the library (ie. VH/VL pairings in
the form of antigen binding polypeptides, e.g. Fabs, scFVs or
antibodies) with a target antigen, and selecting one or more clones
which encode a VH/VL pairings exhibiting the desired antigen
binding characteristics.
[0214] Phage display libraries may be selected on immobilized
target antigen or on soluble (often biotinylated) target antigen.
The Fab format allows affinity driven selection due to its
monomeric appearance and its monovalent display on phage, which is
not possible for scFv (as a consequence of aggregation and
multivalent display on phage) and IgG (bivalent format). Two to
three rounds of selections are typically needed to get sufficient
enrichment of target specific binders.
[0215] Affinity driven selections can be performed by lowering the
amount of target antigen in subsequent rounds of selection, whereas
extended washes with non-biotinylated target enables the
identification of binders with extremely good affinities.
[0216] The selection procedure allows the user to home in on
certain epitopes; whereas the classical method for elution of phage
clones from the immobilized target is based on a pH shock, which
denatures the antibody fragment and/or target, competition with a
reference mAb against the target antigen or soluble receptor or
cytokine leads to the elution of phage displaying antibody
fragments binding to the relevant epitope of the target (this is of
course applicable to other display systems as well, including the B
cells selection method).
[0217] Individual clones taken from the selection outputs may be
used for small scale production of antigen-binding polypeptides
(e.g. antibody fragments) using periplasmic fractions prepared from
the cells or the culture supernatants, into which the fragments
"leaked" from the cells. Expression may be driven by an inducible
promoter (e.g. the lac promoter), meaning that upon addition of the
inducer (IPTG) production of the fragment is initiated. A leader
sequence ensures the transport of the fragment into the periplasm,
where it is properly folded and the intramolecular disulphide
bridges are formed.
[0218] The resulting crude protein fractions may be used in target
binding assays, such as ELISA. For binding studies, phage prepared
from individual clones can be used to circumvent the low expression
yields of Fabs, which in general give very low binding signals.
These protein fractions can also be screened using in vitro
receptor--ligand binding assays to identify antagonistic
antibodies; ELISA based receptor--ligand binding assays can be
used, also high throughput assays like Alphascreen are possible.
Screening may be performed in radiolabelled ligand binding assays,
in which membrane fractions of receptor overexpressing cell lines
are immobilized; the latter assay is extremely sensitive, since
only picomolar amounts of radioactive cytokine are needed, meaning
that minute amounts of antagonistic Fabs present in the crude
protein fraction will give a positive read-out. Alternatively, FACS
can be applied to screen for antibodies, which inhibit binding of a
fluorescently labelled cytokine to its receptor as expressed on
cells, while FMAT is the high throughput variant of this.
[0219] Fabs present in periplasmic fractions or partially purified
by IMAC on its hexahistidine tag or by protein G (known to bind to
the CH1 domain of Fabs) can be directly used in bioassays using
cells, which are not sensitive to bacterial impurities;
alternatively, Fabs from individual E. coli cells can be recloned
in mammalian systems for the expression of Fabs or IgG and
subsequently screened in bioassays.
[0220] Following identification of positive expression vector
clones, i.e. clones encoding a functional VH/VL combination which
binds to the desired target antigen, it is a matter of routine to
determine the nucleotide sequences of the variable regions, and
hence deduce the amino acid sequences of the encoded VH and VL
domains.
[0221] If desired, the Fab (or scFV) encoding region may be
recloned into an alternative expression platform, e.g. a bacterial
expression vector (identical to the phagemid vector, but without
the gene 3 necessary for display on phage), which allows larger
amounts of the encoded fragment to be produced and purified.
[0222] The affinity of target binding may be determined for the
purified Fab (or scFV) by surface plasmon resonance (e.g. Biacore)
or via other methods, and the neutralizing potency tested using in
vitro receptor--ligand binding assays and cell based assays.
[0223] Families of antigen-binding, and especially antagonistic
Fabs (or scFVs) may be identified on the basis of sequence analysis
(mainly of VH, in particular the length and amino acid sequence of
CDR3 of the VH domain).
Potency Optimisation
[0224] Clones identified by screening/selection as encoding a VH/VL
combination with affinity for the desired target antigen may, if
desired, be subject to downstream steps in which the affinity
and/or neutralising potency is optimised.
[0225] Potency optimization of the best performing member of each
VH family can be achieved via light chain shuffling, heavy chain
shuffling or a combination thereof, thereby selecting the affinity
variants naturally occurring in the animal. This is particularly
advantageous in embodiments where the original camelid VH/VL
domains were selected from an actively immunised camelid, since it
is possible to perform chain shuffling using the original library
prepared from the same immunised animal, thereby screening affinity
variants arising in the same immunised animal.
[0226] For light chain shuffling the gene segment encoding the VH
region (or VHCH1) of VH/VL pairing with desirable antigen binding
characteristics (e.g. an antagonistic Fab) may be used to construct
a library in which this single VH-encoding gene segment is combined
with the light chain repertoire of the library from which the clone
was originally selected. For example, if the VH-encoding segment
was selected from a library (e.g. Fab library) prepared from a
camelid animal actively immunised to elicit an immune response
against a target antigen, then the "chain shuffling" library may be
constructed by combining this VH-encoding segment with the light
chain (VL) repertoire of the same immunised camelid. The resulting
library may then be subject to selection of the target antigen, but
under stringent conditions (low concentrations of target, extensive
washing with non-biotinylated target in solution) to ensure the
isolation of the best affinity variant. Off-rate screening of
periplasmic fractions may also assist in the identification of
improved clones. After sequence analysis and recloning into a
bacterial production vector, purified selected Fabs may be tested
for affinity (e.g. by surface plasmon resonance) and potency (e.g.
by bioassay).
[0227] Heavy chain shuffling can be performed by cloning back the
gene segment encoding the light chain (VL) of a clone selected
after light-chain shuffling into the original heavy chain library
from the same animal (from which the original VH/VL-encoding clone
was selected). Alternatively a CDR3 specific oligonucleotide primer
can be used for the amplification of the family of VH regions,
which can be cloned as a repertoire in combination with the light
chain of the antagonistic Fab. Affinity driven selections and
off-rate screening then allow the identification of the best
performing VH within the family.
[0228] It will be appreciated that the light chain shuffling and
heavy chain shuffling steps may, in practice, be performed in
either order, i.e. light chain shuffling may be performed first and
followed by heavy chain shuffling, or heavy chain shuffling may be
performed first and followed by light chain shuffling. Both
possibilities are encompassed within the scope of the
invention.
[0229] From light chains or heavy chains of VH/VL pairings (e.g.
Fabs) with improved affinity and potency the sequences of, in
particular, the CDRs can be used to generate engineered variants in
which mutations of the individual Fabs are combined. It is known
that often mutations can be additive, meaning that combining these
mutations may lead to an even more increased affinity.
Germlining and Formatting for Human Therapeutic Use
[0230] The VH and VL-encoding gene segments of selected expression
clones encoding VH/VL pairings exhibiting desirable antigen-binding
characteristics (e.g. phage clones encoding scFVs or Fabs) may be
subjected to downstream processing steps and recloned into
alternative expression platforms, such as vectors encoding antigen
binding polypeptide formats suitable for human therapeutic use
(e.g. full length antibodies with fully human constant
domains).
[0231] Promising "lead" selected clones may be engineered to
introduce one or more changes in the nucleotide sequence encoding
the VH domain and/or the VL domain, which changes may or may not
alter the encoded amino acid sequence of the VH domain and/or the
VL domain. Such changes in sequence of the VH or VL domain may be
engineered for any of the purposes described elsewhere herein,
including germlining or humanisation, codon optimisation, enhanced
stability, optimal affinity etc.
[0232] The general principles germlining or humanisation described
herein apply equally in this embodiment of the invention. By way of
example, lead selected clones containing camelid-encoded VH and VL
domains may be germlined/humanised in their framework regions (FRs)
by applying a library approach. After alignment against the closest
human germline (for VH and VL) and other human germlines with the
identical canonical folds of CDR1 and CDR2, the residues to be
changed in the FRs are identified and the preferred human residue
selected, as described elsewhere herein in detail. Whilst
germlining may involve replacement of camelid-encoded residues with
an equivalent residue from the closest matching human germline this
is not essential, and residues from other human germlines could
also be used.
[0233] The germlining of a VH domain having an amino acid sequence
homologous to a member of the human VH3 family will often involve
replacement/substitution of a number of residues, which already
deviate in publically known Lama glama, Lama pacos or Camelus
dromedarius derived germline sequences. Permitted amino acid
substitutions for germlining/humanisation of a VH3 domain of Lama
glama, Lama pacos or Camelus dromedarius, and in particular Lama
glama include, but are not limited to, amino acid replacements at
any one or any combination of positions 71, 83 and 84 in the
framework region (using Kabat numbering). Such replacement(s) will
involve substitution of the camelid-encoded residue(s) at these
positions with a different amino acid, which may be a natural or
non-natural amino acid, and is preferably an amino acid known to
occur at the equivalent position in a human-encoded VH3 domain. For
example, Alanine at position 71 might be replaced with serine or
alanine, Lysine at position 83 might be replaced with Arginine and
Proline at position 84 might be replaced with Alanine. Accordingly,
particular non-limiting embodiments of the antigen binding
polypeptide of the invention include variants comprising a camelid
(and more specifically llama, alpaca or dromedary) VH domain
exhibiting sequence homology to a human VH3 domain, which VH domain
includes amino acid substitutions (versus the camelid-encoded
sequence) at one or more or all of positions 71, 83 and 84 (using
Kabat numbering). In particular, variants with one or more or any
combination of the following substitutions are permitted: A changed
to S at position 71, K changed to R at position 83 or P changed to
A at position 84.
[0234] Once the amino acid sequences of the lead VH and VL domains
(following potency optimisation, as appropriate) are known,
synthetic genes of VH and VL can be designed, in which residues
deviating from the human germline are replaced with the preferred
human residue (from the closest matching human germline, or with
residues occurring in other human germlines, or even the camelid
wild type residue). At this stage the gene segments encoding the
variable domains may be re-cloned into expression vectors in which
they are fused to human constant regions of the Fab, either during
gene synthesis or by cloning in an appropriate display vector.
[0235] The resulting VH and VL synthetic genes can be recombined
into a Fab library or the germlined VH can be recombined with the
wild type VL (and vice versa, referred to as "hybrid" libraries).
Affinity-driven selections will allow the isolation of the best
performing germlined version, in case of the "hybrid" libraries,
the best performing germlined VH can be recombined with the best
performing germlined VL.
[0236] Amino acid and nucleotide sequence information for the
germlined Fabs can be used to generate codon-optimized synthetic
genes for the production of full length human IgG of the preferred
isotype (IgG1 for ADCC and CDC, IgG2 for limited effector
functions, IgG4 as for IgG2, but when monovalent binding is
required). For non-chronic applications and acute indications
bacterially or mammalian cell produced human Fab can produced as
well.
[0237] Combining steps of the above-described processes, in a
particular non-limiting embodiment the present invention provides a
method of producing an expression vector encoding a chimeric
antigen binding polypeptide immunoreactive with a target antigen,
said method comprising the steps of:
a) actively immunising a camelid (including but not limited to
Llama or alpaca), thereby raising conventional camelid antibodies
against a target antigen; b) preparing cDNA or genomic DNA from a
sample comprising lymphoid tissue (e.g. circulating B cells) from
said immunised camelid; c) amplifying regions of said cDNA or
genomic DNA to obtain amplified gene segments, each gene segment
comprising a sequence of nucleotides encoding a VH domain or a
sequence of nucleotides encoding a VL domain of a camelid
conventional antibody; d) cloning the gene segments obtained in c)
into expression vectors, such that each expression vector contains
a gene segment encoding a VH domain and a gene segment encoding a
VL domain and directs expression of an antigen binding polypeptide
comprising said VH domain and said VL domain, thereby producing a
library of expression vectors; e) screening antigen binding
polypeptides encoded by the library obtained in step d) for
immunoreactivity with said target antigen, and thereby selecting an
expression vector encoding an antigen binding polypeptide
immunoreactive with said target antigen; f) optionally performing a
light chain shuffling step and/or a heavy chain shuffling step to
select an expression vector encoding a potency-optimised antigen
binding polypeptide immunoreactive with said target antigen; g)
optionally subjecting the gene segment encoding the VH domain of
the vector selected in step e) or step f) and/or the gene segment
encoding the VL domain of the vector selected in step e) or step f)
to germlining and/or codon optimisation; and h) cloning the gene
segment encoding the VH domain of the vector selected in part e) or
f) or the germlined and/or codon optimised VH gene segment produced
in step g) and the gene segment encoding the VL domain of the
vector selected in part e) or f) or the germlined and/or codon
optimised VL gene segment produced in step g) into a further
expression vector, in operable linkage with a sequence of
nucleotides encoding one or more constant domains of a human
antibody, thereby producing an expression vector encoding a
chimeric antigen binding polypeptide comprising the VH and VL
domains fused to one or more constant domains of a human
antibody.
[0238] The invention also extends to expression vectors prepared
according to the above-described processes, and to a method of
producing an antigen binding polypeptide immunoreactive with a
target antigen, the method comprising steps of:
a) preparing expression vector encoding an antigen binding
polypeptide immunoreactive with a target antigen using the method
described above; b) introducing said expression vector into host
cell or cell-free expression system under conditions which permit
expression of the encoded antigen binding polypeptide; and c)
recovering the expressed antigen binding polypeptide.
[0239] In one embodiment, the latter process encompasses bulk
production-scale manufacture of the antigen-binding polypeptide of
the invention, particularly bulk-scale manufacture of therapeutic
antibodies intended for use as pharmaceutically active agents, by
recombinant expression. In such embodiments, the expression vector
prepared in step a) and the host cell/expression system used in
step b) are selected to be suitable for large-scale production of
recombinant antibodies intended for administration to human
patients. The general characteristics of suitable vectors and
expression systems for this purpose are well known in the art.
[0240] The invention will be further understood with reference to
the following non-limiting experimental examples.
[0241] Examples 1 to 9 illustrate the process of raising an
antibody against an example antigen denoted "cytokine x", starting
from immunization of llamas. The same general protocol can be
adapted for any target antigen in any camelid species, hence the
precise identity of "cytokine x" is not material. The process is
also illustrated for preparation of Fabs binding IL-1Beta (Example
15 onwards).
[0242] Various publications are cited in the foregoing description
and throughout the following examples, each of which is
incorporated by reference herein in its entirety.
General Protocol
Example 1
Immunization of Llamas
[0243] Immunizations of llamas (Lama glama) and harvesting of
peripheral blood lymphocytes as well as the subsequent extraction
of RNA and amplification of antibody gene fragments were performed
as described by De Haard and colleagues (De Haard et al., J. Bact.
187: 4531-4541 (2005)). One llama was immunized intramuscularly
with recombinant human Cytokine x using Freund's complete adjuvant
or an appropriate animal-friendly adjuvant Stimune (Cedi
Diagnostics BV, The Netherlands). Cytokine x (recombinantly
expressed in engineered human cell line) was purchased. Prior to
immunization the lyophilized cytokine x was reconstituted in PBS
(Dulbecco) at a concentration of 250 .mu.g/ml. The llama received 6
injections at weekly intervals, the first two injections with 100
.mu.g of cytokine per injection, the four last injections with 50
.mu.g for each boost. Four days after the last immunization a blood
sample (PBL1) of 150 ml was collected from the animal and serum was
prepared. Ten days after the last immunization a second blood
sample (PBL2) of 150 ml was taken and serum was prepared.
Peripheral blood lymphocytes (PBLs), as the genetic source of the
llama immunoglobulins, were isolated from the blood sample using a
Ficoll-Paque gradient (Amersham Biosciences) yielding between 1 and
5.times.10.sup.8 PBLs. The maximal diversity of antibodies is
expected to be equal to the number of sampled B-lymphocytes, which
is about 10% (between 9.2-23.2% (De Genst et al., Dev. Comp.
Immunol. 30:187-98 (2006)) of the number of PBLs
(1-5.times.10.sup.7). The fraction of conventional antibodies in
llama serum is up to 80% of the amount of total immunoglobulin,
which might be extrapolated to a similar fraction of B-lymphocytes
that produce the conventional antibodies. Therefore, the maximal
diversity of conventional antibodies in the 150 ml blood sample is
calculated as 0.8-4.times.10.sup.7 different molecules. Total RNA
was isolated from PBLs according to the method of Chomczynski et
al. Anal. Biochem. 162:156-159 (1987)).
Example 2
Enrichment of Antigen Reactive B Cells by Panning or FACS Sorting
(Optional)
[0244] In order to reduce the complexity of the sampled B cell
repertoire enabling the efficient cloning of the recombinatorial
Fab phage display library, antigen reactive B cells were enriched
by a FACS sorting (Weitkamp et al., J. Immunol. Meth. (2003) 275:
223-237) using fluorescently labelled antigen and a mAb recognizing
camelid conventional antibody specifically (as B cell marker) or by
a panning procedure on immobilized antigen (Lightwood et al., J.
Immunol. Meth. 316:133-143 (2006)).
[0245] PBLs from immunized animals were isolated via a density
centrifugation on Ficoll-Paque as described above. Optionally
co-purified red blood cells were lysed by resuspending the PBL
pellet in 20 ml of lysis buffer (8.29 g/L NH4Cl, 1.09 g/L KHCO3 and
37 mg/L EDTA) at room temperature followed by centrifugation for 10
minutes at 200.times.g. Optional was also the depletion of
monocytes by adhering these to the plastic surface of 1150 culture
flask. To achieve this cells were resuspended in 70 ml RPMI
(Invitrogen) supplemented with 10% foetal calf serum, Glutamax, 25
mM Hepes, penicillin-streptomycin (Invitrogen) and 0.38% sodium
citrate and incubated for 2 hours at 37.degree. C. and 5% CO2 in
the flasks. The supernatant fraction containing the B selected was
recovered and cells were counted.
[0246] Bulk sorting in FACS of (living) B cells displaying target
specific conventional antibodies was performed by simultaneous
staining with the fluorescently labeled mAb specifically
recognizing camelid conventional antibodies and target antigen,
labeled with yet another fluorescent dye. Between 1,000 and 100,000
antigen specific cells were sorted and used for RNA extraction by
applying the protocol of Gough and colleagues (Gough, Anal.
Biochem. 173:93-95 (1988)) or by using the TRIzol kit (Invitrogen).
Total RNA was converted into random primed cDNA as template for the
amplification of the antibody heavy and light chain variable genes
(see Example 3 and further).
Example 3
Amplification and Cloning of Variable Region Genes
[0247] Random primed cDNA was prepared from 80 .mu.g of PBL RNA
using the superscript III First-Strand Synthesis System for RT-PCR
(Invitrogen). RNA was heat-denatured for 5 min at 65.degree. C. in
the presence of 2.5 .mu.M of random hexanucleotide primer and 500
.mu.M dNTPs in 8 independent reaction of 20 ul reaction.
Subsequently, buffer and dithiothreitol were added according to the
supplier's instructions, as well as 640 units of RNasOUT (40
units/.mu.l, Invitrogen), and 3200 units of SuperscriptIII reverse
transcriptase (200 units/.mu.l; Invitrogen) in a total final volume
of 8.times.40 .mu.l. After 50 min at 50.degree. C., 5 min at
85.degree. C. and 1 min at 1.degree. C. RNAse H was added
(.about.4U) and incubated for 20 min at 37.degree. C. The pooled
cDNA was cleanup using QIAquick PCR Purification Kit according to
supplier's recommandation and used for PCR.
[0248] Primers annealing to the 3' end of CH1 and 5' and 3' end of
VH were designed on the basis of germline sequences from llama and
dromedary, for which the deposited sequences could be retrieved
from IMGT and other databases following the citations from De Genst
and colleagues (De Genst et al, Dev. Comp. Immunol. 30:187-198
(2006)). For design of oligonucleotides for amplification of the
light chain the rearranged and somatically mutated dromedary
sequences were used that were published in a thesis study (I.
Legssyer, Free University Brussels).
[0249] All primary PCRs were carried out with separate BACK primers
annealing to the 5' end of the variable region and combined with
FOR primers annealing to the 3' end of CH1, on relatively large
amounts of random primed cDNA as template (up to 2.5 .mu.l
corresponding to 6 .mu.g of total RNA) to maintain maximal
diversity. The heavy chain derived amplicons can be reamplified
with a combination of JHFOR primers, annealing to the 3' end of VH
and containing a naturally occurring BstEII site, and SfiI-tagged
VHBACK primers annealing to the 5' end of the VH gene, and
subsequently cloned as VH fragments. The light chain V-genes were
obtained by PCR with a set of CKFOR or CLFOR primer annealing to
the 3' end of the constant domain and BACK primers priming at the
5' end of the V-regions. The amplicons from the first PCR reactions
were reamplified with extended CH1 FOR (containing a NotI site) or
CKFOR and CLFOR primers (containing an AscI site) and subsequently
cloned as llama Fab fragments. Alternatively, the DNA segments can
be reamplified with primers tagged with restriction sites (FOR
primers with AscI site and FR4 based BACK primers with XhoI site)
and cloned as VL fragments thus creating chimeric Fab's containing
llama derived V regions combined with human C regions.
[0250] PCR was performed in a volume of 50 .mu.l reactions using
Phusion polymerase (Finnzymes) and 500 pM of each primer for 28
cycles (1 min at 96.degree. C., 1 min at 60.degree. C., and 1 min
at 72.degree. C. All products were purified from agarose gel with
the QIAex-II extraction kit (Qiagen). As input for reamplification
to introduce restriction sites, 100-200 ng of purified DNA fragment
was used as template in a 100-.mu.l reaction volume. The large
amount of input, ensuring the maintenance of variability, was
checked by analysis of 4 .mu.l of the "unamplified" PCR mixture on
agarose gel.
Example 4
Construction of the Primary and Secondary Camelid Fab
Repertoires
[0251] For the construction of the primary heavy chain and the two
primary light chain repertoires, the PCR products, appended with
restriction sites, were gel-purified prior to digestion and the
different VH, VK, and VL families combined into three groups. The
VHCH1 fragments were digested with SfiI and NotI and the VKCK and
VLCL fragments were digested with ApaLI and AscI, and cloned into
the phagemid vector pCB3 (similar to vector pCES1 with adapted
multiple cloning site). The digested fragment (1 to 2 .mu.g) were
ligated to digested and purified PCB3 (2 to 4 .mu.g) using T4-DNA
ligase (Fermentas) at room temperature for several hours and then
at 37.degree. C. for 1-2 hours. The desalted ligation mixture for
light or heavy chain pools was used for electroporation of the E.
coli strain TG1, to create the one-chain libraries.
[0252] Alternatively, the VH fragments, 1.5 .mu.g in total, may be
digested with SfiI and BstEII (present in the VH) and ligated in a
100-200-.mu.l reaction mixture with 9 units of T4-DNA ligase at
room temperature to 4 .mu.g, gel-purified vector PCB4 (similar to
vector PCB3, but with the pill gene deleted). In addition, the VH
gene segments may be cloned via SfiI and BstEII and the VK/VL gene
segments via ApaLI and XhoI, yielding the chimeric Fd and VKCK and
VLCL.
[0253] The Fab library was obtained by cloning of light chain
fragments, digested from plasmid DNA prepared from the light chain
repertoires, into the plasmid collection containing the heavy chain
repertoires. Plasmid DNA, isolated from at least 3.times.10.sup.9
bacteria of the VL library (the donor vector), was digested with
ApaLI and AscI for cloning of the gel purified DNA fragments in the
acceptor vector that already contained the heavy chain libraries,
thus creating a separate Fab library with kappa light chains and
another library consisting of Fabs with a lambda light chain with a
size of 1-10.times.10.sup.9 clones. Similarly, the VLCL or VKCK
from the single chain library can be extracted from agarose gel
using ApaLI/AscI and cloned into the VHCH library vector using the
same restriction site.
Example 5
Selection of the Library
[0254] The rescue of phagemid particles with helper phage M13-KO7
or VCSM-13 was performed on 2-liter scale, using representative
numbers of bacteria from the library for inoculation, to ensure the
presence of at least 10 bacteria from each clone in the start
inoculum. For selections, 10.sup.13 colony-forming units were used
with antigens immobilized in immunotubes (Maxisorp tubes, Nunc) or
in 96 wells microtiterplates (Maxisorp, Nunc) or with soluble
biotinylated antigens. The amount of the immobilized antigens was
reduced 10-100 fold during subsequent selection rounds, starting at
10 .mu.g/ml at round 1.
[0255] Antigens were biotinylated at a ratio of 3 to 10 molecules
of NHS-Biotin (Pierce) per molecule of antigen according to the
supplier's recommendations and tested for their bioactivity in a
bioassay. Unless stated otherwise, the antigens were used for
selection at concentrations of 1 to 10 nM during round1 and 10 pM
to 1 nM during subsequent rounds.
Example 6
Screening for Antagonistic Cytokine x Specific Fab's
[0256] Soluble Fab was produced from individual clones as described
in Marks et al. (Marks et al., J. Mol. Biol. 222:581-597 (1991)),
but preferably as monoclonal phage (Lee et al., Blood 108:3103-3111
(2006)) to boost the sensitivity. Culture supernatants containing
soluble Fab or Fab displaying phage were tested in ELISA with
directly coated antigen or captured via immobilized streptavidin.
Recombinant human cytokine x and streptavidin were coated at 10
.mu.g/ml in 0.1 M NaHCO.sub.3, pH 9.6, for 16 h at 4.degree. C.
Following 3 washes with PBS, 0.1% (v/v) Tween 20, biotinylated
antigen was added for 30 to 60 minutes at room temperature at a
concentration of 0.5 .mu.g/ml. The plates were blocked during 30
min at room temperature with 2% (w/v) semi-skim milk powder
(Marvel) in PBS or with 1% casein solution (in PBS). The culture
supernatant was diluted 1- or 5-fold in 2% (w/v) Marvel/PBS and
incubated 2 h; bound Fab was detected with anti-myc antibody 9E10
(5 .mu.g/ml) recognizing the myc-peptide tag at the carboxyl
terminus of the heavy Fd chain, and rabbit anti-mouse-HRP conjugate
(Dako). Following the last incubation, staining was performed with
tetramethylbenzidine and H.sub.2O.sub.2 as substrate and stopped by
adding 0.5 volume of 1M H.sub.2SO.sub.4; the optical density was
measured at 450 nm. Clones giving a positive signal in ELISA (over
2 times background), were analyzed by BstNI or HinfI fingerprinting
of the PCR products obtained by amplification with the
oligonucleotide primers M13-reverse and geneIII-forward (4) or of
the separate Fd and VKCK or VLCL amplicons.
[0257] Screening for the Fab's capacity to interfere with binding
of cytokine x to its receptor was performed in an appropriate
receptor--ligand binding ELISA. For this, low amounts of
biotinylated cytokine x were incubated with Fab in culture
supernatant on cytokine x--Receptor coated plates and bound
cytokine x was subsequently detected with streptavidin-HRP
conjugate. Positive hits were sequenced and Fab purified for
determining their potency (IC50) in the in vitro receptor--ligand
assay and to assess their affinity in BIAcore on immobilized
cytokine x.
[0258] Large scale induction of soluble Fab fragments from
individual clones was performed on a 50-ml or 250-ml scale in
2.times.TY containing 100 .mu.g/ml carbenicillin and 2% glucose.
After growth at 37.degree. C. to an OD600 of 0.9, the cells were
pelleted (10 min at 2,934.times.g) and resuspended in 2.times.TY
with carbenicillin and 1 mM isopropyl-1-thio-D-galactopyranoside
(IPTG). Alternative the De Bellis procedure (De Bellis and
Schwartz, NAR (1990) 18(5): 1311) was followed using 0.2% in stead
of 2% glucose, thus permitting the direct addition of IPTG to the
medium of the late log phase cells. Bacteria were harvested after
3.5 h of growth at 30.degree. C. by centrifugation (as before);
periplasmic fractions were prepared by resuspending the cell pellet
in 1 ml of ice-cold PBS. After 2-16 h of rotating head-over-head at
4.degree. C., the spheroplasts were removed by two centrifugation
steps; after spinning during 10 min at 3,400.times.g, the
supernatant was clarified by an additional centrifugation step
during 10 min at 13,000.times.g in an Eppendorf centrifuge. The
periplasmic fraction obtained was directly used in the different
functional assays (target binding ELISA, in vitro receptor--ligand
binding assays and Biacore).
[0259] For sequencing, plasmid DNA was prepared from 5-ml cultures
grown at 30.degree. C. in LB-medium, containing 100 .mu.g/ml
carbenicillin and 2% glucose, using the Qiagen Mini-kit (Qiagen) or
on amplicons with vector primers M13-reverse and geneIII-forward,
which anneal at the borders of the Fab insert.
Example 7
Large Scale Production and Purification of Lead Fab's
[0260] Fab inserts from 3 to 6 different leads were recloned via
ApaLI-NotI in an expression vector (coded pCB5) identical to pCB3
including the hexahistidine and C-MYC tags fused to the
carboxyterminus of the Fd, but lacking the bacteriophage M13 gene3.
In parallel the V regions were recloned with the appropriate
combination of restriction enzymes and sequentially cloned in gene3
deleted vectors containing human CH1 and CK or CL for the
expression of chimeric Fabs. After fingerprint analysis, individual
clones obtained after recloning were grown on 50-ml or 250-ml scale
and periplasmic fractions were prepared as described above. Fab
fragment was IMAC purified and the correctly formed Fab was further
purified via Size Exclusion Chromatography using a Superdex 75HR
column (Amersham Pharmacia Biotech). Depending on the cell based
assay endotoxin was removed by passage over an anion exchange
column (Source30Q, GE Healthcare), which was sensitized overnight
in 1 M NaOH and subsequently equilibrated in D-PBS. The yield was
determined by measuring the optical density at 280 nm using a molar
extinction coefficient of 13 for Fabs.
[0261] The purified Fab's were tested in the in vitro
receptor--ligand binding assay and Biacore to confirm the
observations made with the Fab fragment as produced by the gene3
containing pCB3 vector. Finally the potency of the Fab was
determined in the bioassay.
Example 8
[0262] In this example the llama derived lead Fabs against cytokine
x were humanized by using a soft randomization procedure targeting
a small set of framework residues and by monovalent display of the
resulting Fab library on the surface of filamentous phage in order
to identify high affinity framework sequences via affinity based
selection (US2003/0190317 A1, incorporated herein by reference).
For instance, for dromedary derived germline VH (IGHV1S20) a small
library was generated for positions 5 (Val, Leu), 55 (Gly, Ala), 83
(Ala, Ser), 95 (Lys, Arg), 96 (Ser, Ala) and 101 (Met, Val)
maintaining 70% of the wild type residues (IMGT numbering). Amino
acids in the hypervariable loops could be addressed in a similar
way.
[0263] Site-directed mutagenesis to correct PCR errors or to
introduce additional specific single codon changes was performed
essentially as described by Kunkel et al. Curr. Protoc. Mol. Biol.
CH8U8.1 (2001) or alternatively Synthetic genes encoding the
variants ordered from GeneArt. The template for site-directed
experiments was single-stranded DNA from a humanized Fab clone.
[0264] Site directed mutagenesis was also used to directly change a
limited number of amino acid codons for humanization or
modification purposes in the DNA encoding the wild type or
humanized Fabs.
[0265] After selection the individual leads were tested on affinity
and potency and the best leads were chosen for reformatting into
human Fab/IgGs.
Example 9
Expression of Human Fab Fragments and Human Monoclonal
Antibodies
[0266] Starting from the humanized VH and VL regions expression of
humanized Fabs was performed as described in Rauchenberger et al.
J. Biol. Chem. 278:38194-204 (2003). For the expression of human
monoclonal antibodies two separate expressions vectors, one for the
light chain and one for the heavy chain construct were constructed
based on the pcDNA 3.1 vector. The expression vector for the light
chain contained either the human C kappa or human C lambda sequence
downstream of a CMV promoter as well as restriction sites allowing
the cloning of the light chain construct as KPN1 BsmB1 fragments
downstream of the CMV promoter and in frame with the light chain
constant domain. The expression vector for the heavy chain
contained then human CH1-hinge-CH2-CH3 sequence downstream of a CMV
promoter as well as restriction sites allowing the cloning of the
VH construct as KPN1 BsmB1 fragments downstream of the CMV promoter
and in frame with the heavy chain constant domains.
[0267] The VL and VH fragments were cloned into the appropriate
expression vectors as KPN1 BsmB1 fragments containing the Kozak
sequence followed by the mouse IgG kappa leader sequences in frame
with the respective VL or VH sequence. These sequences were
obtained by gene synthesis and optimized for expression in
mammalian cells (Geneart).
[0268] For full length IgG production VH and VL expression vectors
constructs were co-transfected into mammalian cells (HEK-293
(transient) or CHO (stable)). Supernatant from transiently
transfected cells or from stably transfected cells was purified via
protein A chromatography.
[0269] Monoclonal antibodies or Fabs were tested in receptor
binding assays and in bioassays and the best leads were selected
for further development.
Example 10
Camelid Vs Human Homology Analysis
Methodology
[0270] Sequences of germline llama and dromedary J regions, which
encode for FR4 were compared with human sequences and were
completely identical (10 out of 10 residues match); the only
exception is IGHJ4, which contains Glutamine (instead of Leucine or
Methionine) on position 6 in FR4 (alignments shown below). For
somatically mutated VLambda FR4 from dromedary 9 out of 10 residues
match (90% homology), since most of the available sequences have
Histidine in stead of Lysine or Glutamate or Glutamine on position
6 (alignment shown below). Finally there is again 90% identity (9
out of 10 residues) in FR4 of the set of six available somatically
mutated dromedary VKappa sequences, because position 3 residue
Serine deviates from what is found in the human germline JK
segments, i.e. Glutamine, Proline and Glycine (alignment shown
below).
[0271] For VH, VLambda and VKappa the analysis is supported by
alignments (see below). Sequence alignment was done with closest
human germline sequence, having identical H1 and H2 canonical
folds.
[0272] Residues which don't align, but which appear in another
family member (or subclass) of the same germline are considered as
homologous, based on the assumption that it is feasible to mutate
them back to said closest human germline sequence.
[0273] Canonical structures are compared using the following
programs: http://www.bioinf.org.uk/abs/chothia/html and
http://www.bioc.unizh.ch/antibody/Sequences/Germlines/VBase_hVK.html.
Residues of analyzed camelid antibodies (or from other species)
which do not fit exactly the canonical fold algorithm are checked
for their appearance in the sequence of members of the matching
human germline family with the same combination of canonical folds,
or mentioned residues allowing the folds are checked for their
appearance within the family of camelid antibodies to which the
analyzed antibody belongs.
[0274] Results are presented in the following sections:
[0275] 10.1--Dromedary VH
[0276] 10.2--Lama glama VH
[0277] 10.3--VL 1-40
[0278] 10.4--VL 2-18
[0279] 10.5--VL 3-1
[0280] 10.6--VL 3-12
[0281] 10.7--VKappa 2-40
[0282] 10.8--J(H) region comparisons of llama and human
[0283] 10.9--Comparison of light chain J regions
[0284] 10.10--Lama pacos VH germline homology
[0285] 10.11--Lama glama derived VH homology analysis
[0286] 10.12--Lama glama derived VL analysis
TABLE-US-00001 10.1 Dromedary VH (SEQ ID NOS: 1-20) IGHV FR1-IMGT
CDR1-IMGT FR2-IMGT CDR2-IMGT FR3-IMGT CDR3-IMGT gene (1-26) (27-38)
(39-55) (56-65) (66-104) (105-115) 1 10 20 30 40 50 60 70 80 90 100
110 .........|.........|...... ...|........ .|........|.....
....|..... ....|.........|.........|.........|.... .....|.....
M99679, IGHV3-53 EVQLVESGG.GLIQPGGSLRLSCAAS GFTVSSNY....
MSWVRQAPGKGLEWVSV IYSGGST...
YYADSVK.GRFTISRDNSKNTLYLQMNSLRAEDTAVYYC AR......... AF000603,
IGHV1S1 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAVYYC AG.........
AJ245151, IGHV1S2 QVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY....
MSWVRQAPGKGLEWVSG IYSDGST...
YYGDSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAMYYC AJ245152, IGHV1S3
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWARQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAMYYC AJ245153,
IGHV1S4 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDNAKNTLYLQMNSLKPEDTAMYYC AJ245154,
IGHV1S5 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDNAKNMLYLQVNSLKPEDTAVYYC AJ245155,
IGHV1S6 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDNAKHMLYLQMHSLKPEDTAMYYC AJ245157,
IGHV1S7 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYD.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245158,
IGHV1S8 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRKAQGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245159,
IGHV1S9 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSS
NTSDGST... YYGDSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAMYYC AJ245160,
IGHV1S10 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSGYY.... MSWVRQAPGRGLEWVSG
IYSDGGT... YYGDSVR.GRFTISRDNAKNMLYLQMNSLKPEDTAMCYC AJ245164,
IGHV1S11 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTSMYYC AJ245165,
IGHV1S12 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245167,
IGHV1S13 AVQLVESGG.GSVQAGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245168,
IGHV1S14 QVQLVESGG.GSVQAGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245170,
IGHV1S15 AVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW.... MYWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245171,
IGHV1S16 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW.... MYWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISRDKAKNMLYLQMNSLKPEDTAMYYC AJ245173,
IGHV1S17 QVQLVESGG.GSVQAGGSLRLSCAAS GFTFSSYD.... MSWVRQAPGKGLEWVSA
IMSDGST... NYADSVK.GRFTISRDNAKNTVYLQMNSLKPEDTAMYYC AJ245174,
IGHV1S18 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYA.... MSWVRQAPGKGLEWVSA
IHSRGST... HYADSMK.GRFTISRDNAKNVLYLQMNSLKPEDTAMYYC AJ245156,
IGHV1S19 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY.... MSWVRQAPGKGLEWVSG
IYSDGST... YYGDSVK.GRFTISQDNAKNTVYLQMNSLKPEDTAMYYC Sequence
comparisons Sequences in comparison to human IGHV3-23 and other
human germlines: 55 G/S/A can be considered more variable/beginning
of CDR2 68 G also human A exist in the same context (IGHV1S17/18)
-> should be replacebale by A 83 A present in many other human
VH3 class germlines 86 M/V also human T exist in the same context
-> should be replacebale by T 95 K also in human germlines
3-15/49/72/73 96 P also in human germline 3-19 101 M not found in
human IGHV3 class Sequence homology: 26/26 (FR1) + 17/17 (FR2) +
38/39 (FR3) = 81/82 = 99% A) Canonical folds analysis CDR H1 and H2
1) Analysis of germline Dromedary VH sequences IGHV1S1 to IGHV1S19
reveals a canonical fold 1 for CDR1 and fold 1 for CDR2, so
identical to the folds of human germline VH3-13 and VH3-53,
confirming the data published by Nguyen and colleagues (EMBO J
(2000), 19(5), p 921-930). The analysis for dromedary IGHV1S1 and
human IGHV3-53 are shown below as examples using auto-generated SDR
templates: IGHV1S1 CDR H1 Class ? ! Similar to class 1/10A, but: !
H94 (Chothia Numbering) is deleted. CDR H2 Class 1/9A [1gig]
IGHV3-53 CDR H1 Class ? ! Similar to class 1, but: ! H94 (Kabat
Numbering) is deleted. CDR H2 Class 1 chothia:human [1gig] (SEQ ID
NOS: 21-42) IGHV FR1-IMGT CDR1-IMGT FR2-IMGT CDR2-IMGT FR3-IMGT
CDR3-IMGT gene (1-26) (27-38) (39-55) (56-65) (66-104) (105-115) 1
10 20 30 40 50 60 70 80 90 100 110 .........|.........|......
...|....... .|.........|..... ....|.....
....|.........|.........|.........|.... .....|..... M99660,
IGHV3-23 EVQLLESGG.GLVQPGGSLRLSCAAS GFTFSSYA... MSWVRQAPGKGLEWVSA
ISGSGGST.. YYADSVK.GRFTISRDNSKNTLYLQMNSLRAEDTAVYYC AK.........
AJ245177, IGHV1S20 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY...
MSWVRQAPGKGLEWVSG INSDGSNT..
YYADSVK.GRFTISRDNAKNTLYLQMNSLKSEDTAMYYC AJ245178, IGHV1S21
AVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYY... MSWVRQAPGKGLEWVSG IYTGGGST..
YYADSVK.GRFTISRDNAKNVLYLKLSSLKPEDTAMYYC AJ245183, IGHV1S22
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPGKGLEWVST INSGGGST..
YYADSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAMYYC AJ245185, IGHV1S23
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPGKGLEWVST INSGGGST..
YYADSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAVYYC AJ245186, IGHV1S24
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPGKGPEWVST INSGGGST..
YYADSVK.GRFTISRDNAKNMLYLQMNSLKPEDTAMYYC AJ245187, IGHV1S25
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPRKGLEWVST INSAGGST..
YYADSVK.GRFTISRDNAKNTVYLQMNSLKPEDTAMYYC AJ245189, IGHV1S26
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPGKGLEWVST INSAGGST..
YYADSVK.GRFTISRDNAKNTVYLQMNSLKPEDTAMYYC AJ245191, IGHV1S27
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYD... MSWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISRDNAKNTLYLQMNSLKPEDTAMYYC AJ245192, IGHV1S28
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYD... MSWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GQFTISRDNAKNTLYLQMNSLKPEDTAMYYC AJ245193, IGHV1S29
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYA... ISWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISRDNAKNTVYLQLNSLKPEDTAMYYC AJ245194, IGHV1S30
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYA... MSWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISRDNAKNTLYLQLNSLKTEDTAMYYC AJ245195, IGHV1S31
AVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYA... ISWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISRDNAKNTVYLQLNSLKTEDTAMYYC AJ245179, IGHV1S32
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... VYWVRQAPGKGLEWVSS IYTGGGST..
YYADSVK.GRFTISKDNAKNTLYLQMNSLKPEDTAMYYC AJ245180, IGHV1S33
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPGKGLEWVSS IYTGGGST..
YYADSVK.GRFTISKDNAKNTLYLQMNSLKPEDTAMYYC AJ245182, IGHV1S34
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MYWVRQAPGKALQWVSS IYTGGGST..
YYADSVK.GPLTISKDNAKNTLYLQMNSLKPEDTAMYYC AJ245190, IGHV1S35
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYW... MSWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISQDNAKNTRYLQMNSLKPEDTAMYYC AJ245196, IGHV1S36
EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYA... MSWVRQAPGKGLEWVSA IYTGGGST..
YYADSVK.GRFTISQDNAKNTVYLQMNSLKTEDTAMYYC AJ245197, IGHV1S37
EVQLVESGG.GSVQAGGSLRLSCAAS GFTFSSYD... MSWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISQDNAKNMLYLQMNSLKPEDTAMYYC AJ245181, IGHV1S38
EVQLVESGG.GLVQPGGSLRLSCAAS GFTSSSYW... MYWVRQAPGKGLEWVSS IYTGGGST..
YYADSVK.GRFTISKDNAKNTLYLQMNSLKPEDTAMYYC AJ245198, IGHV1S39
EVQLVESGG.GLVQPGGSLRLSCAAS AFTYSSCC... MYWVRQAPGKGFEWVSA INSGGGST..
YYADSVK.GRFTISQDNAKNTRYLQMNSLKPEDTAMYYC AJ245199, IGHV1S40P
EVQLVESGG.GLVQPGGSLRLSCAAS *FTFSSYA... ISWVRQAPGKGLEWVSA INSGGGST..
YYADSVK.GRFTISQDNAKNTRYLQMNSLKPEDTAMYYC A) Sequence comparisons
Sequences in comparison to human IGHV3-23 and other human
germlines: 5 V exist in all other VH3 germlines 55 G/T/S can be
considered more variable/beginning of CDR2 83 A present in many
other human VH3 germlines 86 M/V majority is human T in the same
context -> should be replaceable by T 95 K also in human
germlines 3-15/49/72/73 96 P also in human germline 3-19 101 M not
found in human IGHV3 class Sequence homology: 26/26 (FR1) + 17/17
(FR2) + 38/39 (FR3) = 81/82 = 99% B) Canonical folds analysis CDR
H1 and H2 2) Analysis of the germline Dromedary VH sequences
IGHV1S20 and IGH1S22 to IGH1S24 shows the presence of canonical
fold 1 for CDR1 and fold 3 for CDR2, so identical to the canonical
folds found in human germline VH3- 23, confirming the data
published by Nguyen and colleagues (EMBO J (2000), 19(5), p
921-930). The analysis for dromedary IGHV1S20 and human IGHV are
shown below as examples, where it should be mentioned that residue
H57 Asparagine is found back in VH3-21 that also have a class 3
fold for CDR2 in combination with class 1 fold of CDR1 (deletions
are D- and/or J-region encoded): IGHV1S20: CDR H1 Class ? ! Similar
to class 1/10A, but: ! H94 (Chothia Numbering) is deleted. ! H102
(Chothia Numbering) = --(allows: YHVISDG) CDR H2 Class ? ! Similar
to class 3/10B, but: ! H52 (Chothia Numbering) = N (allows: SFWH)
IGHV3-21 CDR H1 Class ? ! Similar to class 1, but: ! H94 (Chothia
Numbering) is deleted. CDR H2 Class 3 chothia:human [1igc] 3)
Germline Dromedary VH sequences IGH1S21 and IGHV1S25 to IGHV1S39
have canonical fold 1 for CDR1 and fold 2 for CDR2, identical to
the folds of human germline VH5, thereby confirming the data
published by Nguyen and colleagues (EMBO J (2000), 19(5), p
921-930). The analysis for IGHV1S32 is shown below as an example
using auto-generated SDR templates. Serine (S) in position H55 is
not found nor Lysine (K) in human germline VH with fold 2 of CDR2:
IGHV1S32: CDR H1 Class ? ! Similar to class 1/10A, but: ! H94
(Chothia Numbering) is deleted. ! H102 (Chothia Numbering) =
--(allows: YHVISDG) CDR H2 Class ? ! Similar to class 2/10A, but: !
H50 (Chothia Numbering) = S (allows: REWYGQVLNKA) ! H71 (Chothia
Numbering) = K (allows: VAL) Compared to results for IGHV3-23: CDR
H1 Class ? ! Similar to class 1/10A, but: ! H94 (Chothia Numbering)
is deleted. ! H102 (Chothia Numbering) = K (allows: YHVISDG) CDR H2
Class ? ! Similar to class 2/10A, but: ! H71 (Chothia Numbering) =
R (allows: VAL) Conclusions: Canonical fold 1 for CDR1 and fold 1
for CDR2 were predicted for a large group of germline dromedary VH
(similar as in human germline VH3-13), another large group used
canonical fold 1 for CDR1 and fold 3 for CDR2 (as in human germline
VH3-21) and another group used canonical fold 1 for CDR1 and fold 2
for CDR2 (as found in human germline VH3-21) Note: Residues 50, 52,
71, 94, 102 according to Chothia numbering compare with residues
55, 57, 80, 107, 117 in
IMGT numbering system, respectively.
TABLE-US-00002 10.2 Llama VH (SEQ ID NO: 21 and 43) IGHV FR1-IMGT
CDR1-IMGT FR2-IMGT CDR2-IMGT FR3-IMGT CDR3-IMGT gene (1-26) (27-38)
(39-55) (56-65) (66-104) (105-115) 1 10 20 30 40 50 60 70 80 90 100
110 .........|.........|...... ...|........ .|.........|.....
....|..... ....|.........|.........|.........|.... .....|.....
M99660, IGHV3-23 EVQLLESGG.GLVQPGGSLRLSCAAS GFTFSSYA....
MSWVRQAPGKGLEWVSA ISGSGGST..
YYADSVK.GRFTISRDNSKNTLYLQMNSLRAEDTAVYYC AK......... AF305949,
IGHV1S6 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSSA.... MSWVRQAPGKGLEWVSS
IYSYSSNT.. YYADSVK.SRFTISTDNAKNTLYLQMNSLKPEDTAVYYC AA......... A)
Sequence comparisons: Sequences in comparison to human IGHV3-23 and
other human germlines: 5 V exist in all other VH3 germlines 55 S in
3-21/38; can be considered more variable/beginning of CDR2 74 S not
in huam gemline class 3 but in 4 and 6 80 T not present in any
other human VH3 germlines 83 A in many othe human class 3 germlines
95 L not present in any other human VH germlines 96 P not present
in class 3 but in 2 and 6 Sequence homology: 26/26 (FR1) + 17/17
(FR2) + 35/39 (FR3) = 78/82 = 95% B) Canonical folds analysis:
M99660, IGHV3-23 Results using auto-generated SDR templates: CDR H1
Class ? ! Similar to class 1/10A, but: ! H94 (Chothia Numbering) is
deleted. ! H102 (Chothia Numbering) = K (allows: YHVISDG) CDR H2
Class ? ! Similar to class 2/10A, but: ! H71 (Chothia Numbering) =
R (allows: VAL) AF305949, IGHV1S6 Results using auto-generated SDR
templates: CDR H1 Class ? ! Similar to class 1/10A, but: ! H32
(Chothia Numbering) = S (allows: IHYFTNCED) ! H94 (Chothia
Numbering) is deleted. ! H102 (Chothia Numbering) = A (allows:
YHVISDG) CDR H2 Class ? ! Similar to class 2/10A, but: ! H50
(Chothia Numbering) = S (allows: REWYGQVLNKA) ! H56 (Chothia
Numbering) = N (allows: YREDGVSA) ! H71 (Chothia Numbering) = T
(allows: VAL) (B) Canonical folds CDR H1 and H2 Analysis of the
only available germline Llama VH sequence aligning to human
germline IGHV3-23 reveals a canonical fold 1 for CDR1 and fold 2
for CDR2 identical to the folds of CDR1 and 2 of some human
germline VH2 members and all VH5 and VH7 members. The analysis for
IGHV1S6 is shown below: Discussion analysis: 1) Position 32 Serine
is also found in human germline VH2-8, VH3-20 and VH3-22, which all
have a canonical fold 1 for CDR1 2) Position 94 is deleted,
position 102 is A; these residues are encoded by the D and/or J
region 3) Position 50 Serine (S) for canonical fold 2 for CDR2 is
not found in human germline VH with the same fold 4) Position 56
Asparagine (N) is found in VH2-9 and VH2-10 that share canonical
fold 2 for CDR2 5) Position 71 Threonine (T) is found in almost all
human germline VH with canonical fold 2 for CDR2 Conclusion: Llama
germline sequence IGHV1S6 is most likely adopting canonical folds
1/10A for CDR1 and 2/10A for CDR2 just as found for the human
IGHV3-23 germline sequence. Note: Chothia numbering 32, 50, 56, 71,
94 and 102 compare to numbers 33, 55, 62, 77, 107 and 115 in IMGT
numbering scheme, respectively.
TABLE-US-00003 10.3 VL 1-40 (SEQ ID NOS: 44 and 45) IGLV FR1-IMGT
CDR1-IMGT FR2-IMGT CDR2-IMGT gene (1-26) (27-38) (39-55) (56-65) 1
10 20 30 40 50 60 .........|.........|...... ...|........
.|........|..... ....|..... M94116, IGLV1-40
QSVLTQPPS.VSGAPGQRVTISCTGS SSNIGAGYD... VHWYQQLPGTAPKLLIY
GNS....... Camvl44 QSVLTQPPS.MSGSLGQRVTISCTGS SSNIGCGSG...
VQWFQQLPGTAPKLLIY GNS....... IGLV FR3-IMGT CDR3-IMGT gene (66-104)
(105-115) FR4 70 80 90 100 110
....|........|.........|.........|.... .....|...... M94116,
IGLV1-40 NRPSGVP.DRFSGSK..SGTSASLAITGLQAEDEADYYC QSYDSSLSG...
Camvl44 NRASG.P.DRFSESK..SGSSASLTITGLQADDEADYYC
ASYDNRLSG--PVFGGGTKLTVLG A) Sequence comparisons: 11 M: not found
in any human sequence 14 S: not in human VL1 sequences but in
almost all other VL types 15 L: not in human VL1 but in VL 3, 4 9,
10 classes 40 Q: not in human VL1 but in VL6-57 42 F: in 3-27 and
Vl7 but not in class 1 68 A: not in any human VL 78 E: not in any
human VL 85 S: not in any human VL 90 T: not in human VL1 but in
classes 2-4 and 6-8 97 D: not in VL1 but in 4-3 and 8-61 Sequence
homology: 23/26 (FR1) + 15/17 (FR2) + 34/39 (FR3) = 72/82 = 88%
homology B) Canonical folds analysis: M94116, IGLV1-40: Results
using auto-generated SDR templates CDR L1 Class ? ! Similar to
class 6/14A, but: ! L31 (Chothia Numbering) = Y (allows: H) ! L32
(Chothia Numbering) = D (allows: N) ! L93 (Chothia Numbering) = S
(allows: R) CDR L2 Class 1/7A [1lmk] Camvl44: Results using
auto-generated SDR templates CDR L1 Class ? ! Similar to class
6/14A, but: ! L31 (Chothia Numbering) = S (allows: H) ! L32
(Chothia Numbering) = G (allows: N) ! L93 (Chothia Numbering) = N
(allows: R) CDR L2 Class 1/7A [1lmk] CDR L2 gives a perfect match
for canonical fold 1/7A, while for CDR L1 three key residues are
questionable for giving a perfect match with canonical fold 6/14A,
which now will be discussed individually. 1) Position L31 Serine
(S, in CDR1) and L32 Glycine (G, in CDR1) should be Histidine (H)
and Asparagine (N), respectively; both residues were not found in
sequences with a canonical fold 14A; no other camelid lambda
sequences, which align with human germline VL1 family, were
identified, therefore making the analysis rather difficult 2)
Position L93 Asparagine (N, in CDR3) should be Arginine (R), but
Asparagine (N) also occurs in two human germline VL4 family
members, which share the canonical fold 14A with human germline
VL1-2 Conclusions: 1) Canonical fold 1/7(A) for CDR2 expected and
probably fold number 6/14A for CDR1, i.e. identical to what is
found in human germline VL1 member 1-40. NOTE: Positions 31, 32 and
93 (Chothia) compare to 34, 35, and 109 in IMGT nomenclature used
for the sequence comparison. 10.4 VL 2-18 (SEQ ID NOS: 46-59) IGLV
FR1-IMGT CDR1-IMGT FR2-IMGT gene leader (1-26) (27-38) (39-55) 1 10
20 30 40 50 .........|.........|...... ...|........
.|........|..... Z73642, IGLV2-18 QSALTQPPS.VSGSPGQSVTISCTGT
SSDVGSYNR... VSWYQQPPGTAPKLMIY Camvl17 MAWALLLLTLLTQGTGSWA
QSALTQPSS.VSGTPGQTVTISCTGT SNDVGGYNY... VSWYQQLPGTAPKLLIY Camvl33
MAWALLLLTLLTQGTGSWA QSALTQPSS.VSGTPGQTVTISCTGT RDDVGGYNY...
VSWYQQLPGTAPKLLIY Camvl36 MAWALLLLTLLTQGTGSWA
QSALTQPSS.VSGTPGQTVTISCTGT SNDVGGYNY... VSPYQQLPGTAPKLLIY Camvl59
MAWALLLLTLLTQGTGSWA QSALTQPSS.VSGTPGQTVTISCTGT SHDVGRYNY...
VSWYQQLPGTAPKFLIY Camvl30 MAWALLLLTLLTQGTGSWA
QSALTQPSS.VSGTPGQTVTISCTGT SNDVGRYNY... VSWYQQFPGTAPKLLIY Camvl32
MAWALLLLTLLTQGTGSWA QSALTQPSS.VSGTPGQTVTISCTGT SNGVGGYNY...
VSWYRQLPGTAPKLLIY Camvl57 MAWALLLLTLLTQGTGSWA
QSALTQPSS.VSGTPGQTVTISCTGT SNDVGGYNY... VSWYQQLPGTAPKLLIY Camvl5
MAWALLLLTLLTQGTGSWA QSALTQPSS.VSGTPGQTVTISCTGT SNDVGPYNY...
VSWYQQLPETAPKLLIY Camvl65 QAVLTQPSS.VSGTPGQTVTISCTGT SNDVGKYNY...
VSWYQQFPGTAPKLLIY Camvl51 MAWALLLLTLLTQGTGSWA
QSALTQPSS.VSGTPGQTVTISCTGT SNDVGGYNY... VSWHQQVPGTAPKLILY Camvl31
MAWALLLLTLLTQGTGSWA QSALAQPSS.VSGTPGQTVTISCTGT SDDVGAYNY...
VSWYQQLPGTAPKLLIY Camvl60 MAWALLLLTLLTQGTGSWA
QSALTQPSS.VSGTPGQTVTISCTGT RDDVGKYNY... VSWYQQLPGTAPKLLIY Camvl52
MAWALLLLTLLTQGTGSWA QSALTQPSS.VSGTPGQTVTISCTGT SNDVGRYAY...
VSWYQHLPGTAPKLLIY IGLV CDR2-IMGT FR3-IMGT CDR3-IMGT gene (56-65)
(66-104) (105-115) FR4 60 70 80 90 100 110 ....|.....
....|........|.........|.........|.... .....|...... Z73642,
IGLV2-18 EVS....... NRPSGVP.DRFSGSK..SGNTASLTISGLQAEDEADYYC
SLYTSSSTF... Camvl17 QDS.......
KRNSGIP.DRFSGSK..SDNTASMTISGLQSADEADYYC ASYFSTYH---SL FGGGTHLTVLG
Camvl33 QIK....... KRLSGIP.DRFSGSK..SGNTASMTISGLQSADEADYYC
ASYRDLNT---LV FGGGTHLTVLG Camvl36 QIN.......
KRASGIP.DRFSGSR..SGNTASMTISGLQSADEADYYC ASYRATNS---IV FGGGTHLTVLG
Camvl59 QVI....... KRASGIP.DRFSGSK..SGNTASMTISGLQSADEADYYC
ASLRSSGN---AV FGGGTHLTVLG Camvl30 QVK.......
KRASGIP.DRFSGSK..SGNIASMTISGLQSADEADYYC ASYRNWAN---LP FGGGTHLTVLG
Camvl32 QVK....... KRASGIP.DRFSGSK..SGNTASMTISGLQSADEADYYC
ASYRNGNN---AV FGGGTHLTVLG Camvl57 QVK.......
KRASGIP.DRFSSSK..SDNTASMTISGLQSADEADYYC ASYRSRDD---AV FGGGTHLTVLG
Camvl5 DVD....... KRASGIP.DRFSGSK..SGNTASMTISGLQSADEADYYC
ASYRSGDN---AA FGGGTRLTVLG Camvl65 QVI.......
KRASGIP.DRFSGSK..SGNTASMTISGLQSADEADYYC ASLSSGNN---AV FGGGTHLTVLG
Camvl51 QVK....... ERPSGIP.DRFSGSK..FGNTASMTISGLQSADEADYYC
ASYSSPNN---VL FGGGTHLTVLG Camvl31 QVN.......
KRPSGIP.DRFSGSK..SGNTVSLTISGLQSADEADYTC ASYKNTYN---AV FGGGTHLTVLG
Camvl60 QVN....... KRASGIP.DRFSGSK..SGNTASMTISGLQSADEADYYC
ASVRDYDNNEFVV FGGGTHLTVLG Camvl52 QVN.......
KRASGTP.DRFSGSK..SGNTASMTTSGLQSADEADYYC SAYRSNDGP---V FGGGTHLTVLG
A) Sequence comparisons: 8 S nor in class 2 but also in 3-27 and
4-60, 5-52 14 T not in class 2 but also in 1-44/47 18 T not in
class 2 but in many other germlines of class 3 and in many other
germline classes as well 45 L not in class 2, only in class 1 53 L
in 2-33, as well as in classes 1, 4, 5, 7, 8, 10 66 K in classes 1,
2, 3 68 N/L/A/G somatic mutation and also human residue P is found
in Camvl51 and Camvl31 71 I in other class 2 members and in class
1-41/51 and classes 3, 4, 9, 10 89 M somatic mutation (?) as also
human residue L is fund in Camvl31 96 S in classes 1, 2, 4, 5 97 A
not found in human germline Sequence homology: 23/26 (FR1) + 16/17
(FR2) + 38/39 (FR3) = 78/82 = 94% homology B) Canonical folds
analysis: Z73642, IGLV2-18: Results using auto-generated SDR
templates CDR L1 Class? ! Similar to class ?/14C, but: ! L32
(Chothia Numbering) = R (allows: Y) ! L90 (Chothia Numbering) = L
(allows: S) ! L93 (Chothia Numbering) = S (allows: G) CDR L2 Class
1/7A [1lmk] Camvl59 Results using auto-generated SDR templates CDR
L1 Class ? ! Similar to class ?/14C, but: ! L28 (Chothia Numbering)
= N (allows: S) ! L93 (Chothia Numbering) = S (allows: G) CDR L2
Class 1/7A [1lmk] Analysis of the camelid lambda light chain
variable sequences aligning to human germline IGLV2-18 reveals a
canonical fold 2/14 for CDR1 and fold 1/7A for CDR2, so identical
to the folds of CDR1 and 2 of human germline VL2 family. The
analysis for Camv159 is shown as an example: CDR L2 gives a perfect
match for canonical fold 1/7A, while for CDR L1 only two key
residues are questionable for giving a perfect match with canonical
fold 2/14C, which now will be discussed individually. 1) Position
L28 Asparagine (N, in CDR1) should be Serine (S), but Aspartate (D)
found in Camv133 is the most often found residue in human germline
VL2 sequences 2) Position L93 Serine (S, in CDR3) should be Glycine
(G), but Serine present in three of the 8 aligned camelid VLs is
the most often found residue in human germline VL2, as in the human
IGLV2-18 used for comparison NOTE: Position 93 (Chothia) compares
to 109 in IMGT nomenclature used for the sequence comparison.
Conclusions: Canonical fold number 2/14 for CDR1 expected and fold
1/7(A) for CDR2, i.e. identical to what is found in human germline
VL2.
TABLE-US-00004 10.5 VL 3-1 (SEQ ID NOS: 60-65) IGLV FR1-IMGT
CDR1-IMGT FR2-IMGT CDR2-IMGT FR3-IMGT CDR3-IMGT gene (1-26) (27-38)
(39-55) (56-65) (66-104) (105-115) 1 10 20 30 40 50 60 70 80 90 100
110 .........|.........|...... ...|........ .|.........|.....
....|..... ....|.........|.........|.........|.... .....|......
X57826, SYELTQPPS.VSVSPGQTASITCSGD KLGDKY...... ACWYQQKPGQSPVLVIY
QDS....... KRPSGIP.ERFSGSN..SGNTATLTISGTQAMDEADYYC QAWDSSTA....
IGLV3-1 Camvl19 QSVLTQPSA.VSVSLGETARITCQGG NFGSYY......
ANWYQQKPGQAPVLVLY KDS....... ARPSGIP ERFSGSS SGGTATLTISGAQAEDEADYYC
QSGSSSA-SA--V FGGGTHLTVLG Camvl20 QSVLTQPSA.VSVPLGETARITCQGG
DFGDYY...... VSWYQQKPGQSPVLVIY KDT....... LRPSGIP ERFTGSS
SGGAATLTISGAQAEDEADYYC QSETSSA-T---V FGGGTHLTVLG Camvl8
TALTQPSA.VSVSLGETARITCQGG NFGSYY...... TSWYQQKPEEAPVVVIY KDT.......
ERPSGIP ERFSASS SGDTATLTISGAQAEDEADYYC QSGSSSA-NAP-V FGGGTKLTVLG
Camvl18 QAVLSQPSA.VSVSLGETARITCQGD NFGSYY...... FSWYQQKPGQAPVLVIY
RNS....... NRPSGIP ERFSASS SGGTATLTISGAQAEDEADYYC QSADSSGRNAR-A
FGGGTKLTVLG Camvl23 QSVLTQPSA.VSVSLGQTARITCQGG ILGSKK......
TNWYQQKPGQAPVLVIY GDD....... SRPSGIP ERFSGSR SGGTATLTISGAQAEDEADYYC
QLLDSTDSSSYWV FGGGTHLTVLG C) Sequence comparisons: 1 Q primer
encoded 2 S/T primer encoded 3 V/A primer encoded 5 S primer
encoded 8 S also in 3-27 and 4-60 9 A also in 3-19/32 15 L in
3-9/16/19/32 17 E not in human class 3 but human Q exists in
Camvl23 in same context 20 R in all other human class 3 sequences
and others 24 Q in 3-19/32 26 G somatic mutation/part of CDR; human
D exists in Camvl18 in same context 39 V/T/F somatic mutation/part
of CDR 40 N/S somatic mutation/part of CDR 49 A in many other class
3 66 A/L/N/S somatic mutation/part of CDR 80 S in 3-16/19/10/25/27
85 G not in class 3 but in classes 6 and 7 94 A in 3-19/10/9 97 E
in 3-10/16/19 Sequence homology: 26/26 (FR1) + 17/17 (FR2) + 38/39
(FR3) = 81/82 = 99% homology D) Canonical folds analysis: Analysis
of the above listed camelid lambda light chain variable sequences
on the UCL webpage http://www.bioinf.org.uk/abs/chothia.html shows
that CDR-L1 adopts canonical fold 11, while CDR-L2 has canonical
fold 7. This corresponds with the canonical folds found in all
human germline IGLV3 family members (see Pluckthun homepage
http://www.bioc.unizh.ch/antibody/Sequences/Germlines/VBase_hVK.h-
tml). The canonical fold is determined by the length of the CDRs
and certain key residues within and outside of the CDR. The
analysis of e.g. Camv120 is shown below: CDR L1 Class ? ! Similar
to class 2/11A, but: ! L2 (Chothia Numbering = S (allows: I) ! L25
(Chothia Numbering = G (allows: A) ! L26 (Chothia Numbering = G
(allows: S) ! L28 (Chothia Numbering = F (allows: NSDE) ! L29
(Chothia Numbering = G (allows: IV) ! L51 (Chothia Numbering = D
(allows: ATGV) ! L71 (Chothia Numbering = A (allows: YF) ! L90
(Chothia Numbering = S (allows: HQ) CDR L2 Class 1/7A [1lmk] CDR L2
gives a perfect match for canonical fold 1/7A, while for CDR L1
certain key residues are questionable for giving a perfect match
with canonical fold 2/11A, which now will be discussed
individually. 1) Position L2 Serine (S) should be Isoleucine (I),
but human IGLV3-5 (which also has fold 11) has Serine (S) residue
found in these camelid VLs. 2) L25 Glycine (G) is found in all
human VL3 family members 3) L26 Glycine (G) should be Serine (S),
but Aspartate (D) found in Camv118 is most often used in human VL3
members 4) L28 Phenylalanine (F, in CDR1) should be Asparagine (N),
Serine (S), Aspartate (D) or Glutamate (E), but Leucine (L) found
in Camv123 is the most often used residue in human VL3 5) L29
Glycine (G, in CDR1) is found in 4 of the 9 human VL3 germlines 6)
L51 Aspartate (D, in CDR2) is most often used in human VL3 7) L71
Alanine (A, FR3) is most often used in human VL3 8) L90 Serine (S,
CDR3) is most used residue in human VL3 Conclusions: 2) Canonical
fold number 11 for CDR1 is expected and fold 7 for CDR2, i.e.
identical to what is found in human germline VL3 Note: Chothia
Numbering 51, 71, and 90 compares to IMGT numbering 57, 87, and
106
TABLE-US-00005 10.6 VL 3-12 (SEQ ID NOS: 60 and 67) IGLV FR1-IMGT
CDR1-IMGT FR2-IMGT CDR2-IMGT FR3-IMGT CDR3-IMGT gene leader (1-26)
(27-38) (39-55) (56-65) (66-104) (105-115) FR4 1 10 20 30 40 50 60
70 80 90 100 110 .........|.........|...... ...|........
.|........|..... ....|..... ....|.........|.........|.........|....
.....|...... Z73658, SYELTQPHS.VSVATAQMARITCGGN NIGSKA......
VHWYQQKPGQDPVLVIY SDS.......
NRPSGIP.ERFSGSN..PGNTTTLTISRIEAGDEADYYC QVWDSSSDH... IGLV3-12
Camvlll QSVLTQPST.ASMSLGQTAKITCQGG SLRNYA...... AHWYQQKPGAAPVLVIY
NDN....... NRPSGIP.ERFSGSK..SGGTATLTISRTKAEDEADYYC LSRDMSDSN-RVV
FGGGTHLTVLG A) Sequence comparisons: 1 Q primer encoded 2 S primer
encoded 3 V primer encoded 5 S primer encoded 8 S also in 3-27 and
4, 5 9 T not in any human germline 11 A not in class 3 but in
classes 1, 2, 4, and 9 13 M not in any human germline 14 S in many
other germlines of class 3 and in many other germline classes as
well 15 L in 3-16/19/32 and in many other classes 16 G almost
everywhere other than in this particular germline 18 T in many
other germlines of class 3 and in many other germline classes as
well 20 K not in human class 3 sequences but in class 4 24 Q in
3-19/32 26 G somatic mutation/part of CDR 39 A in many other
germlines of class 3 48 A not in any human germline 49 A in many
other germlines of class 3 and in many other germline classes as
well 80 K in 3-32 and many other germeline classes 85 G not in
class 3 but in class 7 87 A in many other germlines of class 3 and
in many other germline classes as well 94 T in 3-1 95 K not in
class 3 but in 2-33 and 6-57 97 E in 3-10/16/19 and in many other
germline classes Sequence homology: 22/26 (FR1) + 16/17 (FR2) +
37/39 (FR3) = 75/82 = 91% homology Most likely homology
underestimated due to somatic mutations and because only one family
member is found. B) Canonical folds analysis: Z73658, IGLV3-12:
Results using auto-generated SDR templates CDR L1 Class ? ! Similar
to class 2/11A, but: ! L2 (Chothia Numbering) = Y (allows: I) ! L25
(Chothia Numbering) = G (allows: A) ! L26 (Chothia Numbering) = N
(allows: S) ! L28 (Chothia Numbering) = I (allows: NSDE) ! L29
(Chothia Numbering) = G (allows: IV) ! L51 (Chothia Numbering) = D
(allows: ATGV) ! L71 (Chothia Numbering) = T (allows: YF) ! L90
(Chothia Numbering) = V (allows: HQ) CDR L2 Class 1/7A [1lmk]
Camvll1: Results using auto-generated SDR templates CDR L1 Class ?
! Similar to class ?/11B, but: ! L25 (Chothia Numbering) = G
(allows: A) ! L26 (Chothia Numbering) = G (allows: N) ! L29
(Chothia Numbering) = R (allows: P) ! L34 (Chothia Numbering) = H
(allows: Y) ! L46 (Chothia Numbering) = L (allows: M) ! L71
(Chothia Numbering) = A (allows: V) ! L90 (Chothia Numbering) = S
(allows: A) ! L93 (Chothia Numbering) = M (allows: N) CDR L2 Class
1/7A [1lmk] Remarks: more difficult to align, especially FR1. These
are somatically mutated sequences, meaning that variations in FR
can be expected as well. Deviations from canonical fold analyis are
very comparable in IGLV3-12, so most likely adopts comparable
canonical folds. For CDR L2 fold 1-7A shows a perfect match, CDR L2
will adopt fold 2-11 just as in human counterpart. Conclusion:
Adopts canonical fold 2/11 for CDR1 and fold 1/7A for CDR2, so
identical to human germline VL3. Only one family member found,
which is somatically mutated and therefore it is difficult to draw
conclusions.
TABLE-US-00006 10.7 VKappa 2-40 (SEQ ID NOS: 68-75) IGKV FR1-IMGT
CDR1-IMGT FR2-IMGT CDR2-IMGT FR3-IMGT CDR3-IMGT gene (1-26) (27-38)
(39-55) (56-65) (66-104) (105-115) 1 10 20 30 40 50 60 70 80 90 100
110 .........|.........|...... ...|........ .|.........|.....
....|..... ....|.........|.........|.........|.... .....|.....
X59314, IGKV2-40 DIVMTQTPLSLPVTPGEPASISCRSS QSLLDSDDGNTY
LDWYLQKPGQSPQLLIY TLS.......
YRASGVP.DRFSGSG..SGTDFTLKISRVEAEDVGVYYC MQRIEFP.... Kp6
DIVMTQSPSSVTASVGEKVTINCKSS QSVFDTSRQKSF LNWHRQRPGQSPRRLIY
YAS....... TRQSGVP.DRFSGSG..STTDFTLTISSVQPEDAAVYYC QQAFNVQPS
FGSGTRLEIKR Kp48 DIVMTQSPSSVTASVGEKVTINCKSS QSVFSSSSQKSL
LDWHQQRPGQSPRRLIY YAS.......
ARASGVP.DRFSGSG..STTDFTLTISSVQPEDAAVYYC QQYSGSPPT FGSGTRLEIKR Kp3
DIVMTQSPSSVTASVGEKVTINCKSS QHVISVSNQKSY LNWYQQRPGQSPRLLIY
YAS....... TRESGIP.DRFSGSG..STTDFALTISSVQPEDAAVYYC QQAYSTPYS
FGSGTRLEIKR Kp20 DIVMTQSPSSVTASVGEKVTINCKSS QSVLSSSNQKSY
LNWYQQRPGQSPRLLIY YAS.......
TRESGIP.DRFSGSG..STTDFTLTISSVQPEDAVVYYC QQAYSTPYS FGSGTRLEIKR Kp7
DIVMTQSPSSVLASVGEKVTINKCSS QSVLSSSNQKSY LNWYQQRPGQSPRLLIT
YAS....... TRESGIP.DRFSGSG..STTDFTLTISSVQPEDAVVYYC QQAYSKPYN
FGNGTRLEIKR Kp10 DIVMTQSPTSVTASVGEKVTINCKSS QSVFASSSQKSQ
LAWHQQRPGQSPRRLIY YAS.......
TRESGVP.DRFSGSG..STTDFTLTISSVQPEDAAVYYC QHLYSAPYS FGSGTRLEIKR Kp1
DIVMTQSPSSVTASVGEKVTINCKSS QNLVSDSNQRSL LAWHQQRPGQSPRKLIY
YAS....... TRISGTP.DRFSGSG..STTDFTLTISSVQPEDAAVYYC QQGKKDPLS
FGSGTRLEIKR A) Sequence comparisons: 7 S primer encoded 9 S only in
human kappa 1 not kappa 2 family 11 V only in human kappa 1-12 not
kappa 2 family 12 T/L not in human kappa germline 13 A not in class
2 but in class 1 and 5 14 S not in class 2 but in class 1, 3, 4, 7
15 V only in class 1 19 V not in class 2 but in class 1, 5, 6 20 T
not in class 2 but in class 1, 3, 4, 6, 7 22 N not in class 2 but
in class 4 24 K in classes 2, 4, 5 40 N/A somatic mutation, human D
also exists in KP48 42 H somatic mutation, human Y also exists in
KP3/20/7 43 Q/R Q also found in classes 1, 2, 3, 4, 5, 6 and 7; R
is somatic mutation 51 R in 2-24 and 2-30 as well as is class 3 52
R/K R in 2-30 and 1-17; human L also exists 66 T/A in classes 1, 3,
4 but not in 2; somatic mutation/part of CDR 68 Q/E somatic
mutation, human A also exists in KP48 71 I somatic mutation; human
V also exists in same context in various dromedary kappa chains 84
T not in any human kappa germline 90 T not in class 2 but in
classes 1, 3, 4, 5, 6, 7 93 S not in class 2 but in classes 1, 3,
4, 6 95 Q not in class 2 but in classes 1, 3, 4 96 P not in class 2
but in classes 1, 3 99 A not in class 2 but in classes 5, 6 100 A/V
not in class 2 but in classes 1, 3, 4, 5, 6, 7 Sequence homology:
17/26 (FR1) + 17/17 (FR2) + 31/39 (FR3) = 66/82 = 80% homology Most
likely homology underestimated due to somatic mutations and because
all sequences seem to belong to the same class. B) Canonical folds
analysis: X59314, IGKV2-40 Results using auto-generated SDR
templates CDR L1 Class ? ! Similar to class 3/17A, but: ! L90
(Chothia Numbering) = Q (allows: N) ! L93 (Chothia Numbering) = E
(allows: NS) CDR L2 Class 1/7A [1lmk] Kp6 Results using
auto-generated SDR templates CDR L1 Class ? ! Similar to class
3/17A, but: ! L29 (Chothia Numbering) = V (allows: L) ! L90
(Chothia Numbering) = Q (allows: N) CDR L2 Class 1/7A [1lmk]
Analysis of the camelid kappa light chain variable sequences
aligning to human germline IGLV2-40 reveals a canonical fold 3/17A
for CDR1 and fold 1/7A for CDR2, so identical to the folds of CDR1
and 2 of human germline IGKV2-40. Dromedary Kp6 was analyzed as an
example. CDR2 gives a perfect match for canonical fold 1, while for
CDR1 a number of residues are questionable for giving a perfect
match with canonical fold 3/17A, which now will be discussed
individually. 1) Position L29 Valine (V, in CDR1) should be Leucine
(L) for having canonical fold 3 for CDR1, but this residue is
present in dromedary Kp1 sequence 2) Position L90 Glutamine (Q, in
CDR3) occurs as well in human germline VBase_VK4_1, which also has
canonical folds 3 for CDR1 (in combination with fold 1 for CDR2)
Conclusions: Canonical fold 1 for CDR2 expected and most probably
fold number 3/17A for CDR1 and fold 1 for CDR2, i.e. identical to
what is found in human germline. NOTE: Positions 90 (Chothia)
compares to position 107 in IMGT nomenclature used for the sequence
comparison.
TABLE-US-00007 10.8 J(H) region comparisons of human SEQ ID NOS:
76-81) and llama (SEQ ID NOS: 82-86) Human IGHJ Genes ---CDR3---
----FR4---- 1 10 20 ......... |.........| J00256, IGHJ1 ...AEYFQH
WGQGTLVTVSS J00256, IGHJ2 ...YWYFDL WGRGTLVTVSS J00256, IGHJ3
.....AFDV WGQGTMVTVSS J00256, IGHJ4 .....YFDY WGQGTLVTVSS J00256,
IGHJ5 ....NWFDS WGQGTLVTVSS J00256, IGHJ6 YYYYYGMDV WGQGTTVTVSS
Llama: IGHJ Genes --CDR3--- ----FR4---- 1 10 ....... ..|........
AF305952, IGHJ2 GYRYLEV WGQGTLVTVSS AF305952, IGHJ3 NALDA
WGQGTLVTVSS AF305952, IGHJ4 EYDY WGQGTLVTVSS AF305952, IGHJ5 PQFEY
WGQGTLVTVS AF305952, IGHJ6 (1) DFGS WGQGTLVTVS Sequence analysis:
The J(H) regions derived from llama show a perfect homology to
their human counterparts. There is a 100% sequence identity. The
only exception is the 6.sup.th residue of FR4 in llama IGHJ4 being
Gln (Q). This residue is not found in human J(H) regions at this
position.
TABLE-US-00008 10.9 Comparison of lambda (SEQ ID NOS: 87-96) and
kappa (SEQ ID NOS: 97-103) light chain J regions Lambda J: Kabat
numbering ..97 98......108 -- CDR3 -- ---FR4---- -J-lambda- ..
.......... X04457, IGLJ1 YV FGTGTKVTVL M15641, IGLJ2 VV FGGGTKLTVL
M15642, IGLJ3 VV FGGGTKLTVL X51755, IGLJ4 FV FGGGTQLIIL X51755,
IGLJ5 WV FGEGTELTVL M18338, IGLJ6 NV FGSGTKVTVL X51755, IGLJ7 AV
FGGGTQLTVL Camv119 etc. .. FGGGTHLTVLG (38/44 anaylzed sequences)
Camv18/18/4 .. FGGGTKLTVLG (3/44 analyzed sequences) Camv158/28/5
.. FGGGTRLTVLG (3/44 analyzed sequences) Sequence analysis: The
first 2 residues of the human germline J are considered part of the
CDR3. They are often changed during the joining process. The best
match of dromedary J-lambda regions is with IGLJ2 and 3. 9/10 amino
acids are identical: 90% sequence identity. Only His or Arg in
position 103 (Kabat) do not match. Arg is positively charged (as
Lys) and even His can be considered somewhat positively charged.
Therefore exchange to the human Lys should be possible. Kappa J:
Kabat numbering ..97 98......108 -- CDR3 -- ---FR4---- Kappa ..
.......... J00242, IGKJ1 WT FGQGTKVEIK J00242, IGKJ2 YT FGQGTKLEIK
J00242, IGKJ3 FT FGPGTKVDIK J00242, IGKJ4 LT FGGGTKVEIK J00242,
IGKJ5 IT FGQGTRLEIK Kp6/48/3/20/10/1 FGSGTRLEIKR (6/7 analyzed
sequences) Kp7 FGNGTRLEIKR (1/7 analyzed sequences) Sequence
analysis: The first 2 residues of the human germline J regions are
considered part of the CDR3. They are often changed during the
joining process. Best match of dromedary J-kappa is with human
IGKJ5. 9/10 amino acids match: 90% sequence identity.
TABLE-US-00009 10.10 Lama pacos VH germline analyziz (SEQ ID NOS:
269-325) % % FR1 Name Ident Homol 1 2 3 4 5 6 7 8 9 10 11 12 13 14
15 16 X92343|IGHV1- Q V Q L V Q S G A E V K K P G A 46*01 LpVH1-s6
89.2% 91.9% E V Q L V Q P G A E L R N P G A (AM939701) LpVH1-s2
89.2% 91.9% E V Q L V Q P G A E L R K P G A (AM939697) LpVH1-s3
87.8% 90.5% E V Q L V Q P G A E L R K P G A (AM939698) LpVH1-s4
89.2% 91.9% E V Q L V Q P G A E L R K P G A (AM939699) LpVH1-s5 Ps
89.2% 91.9% E V Q L V Q P G A E L R K P G A (AM939700)
M99660|IGHV3- E V Q L L E S G G G L V Q P G G 23*01 AM939712 94.6%
98.6% E V Q V V E S G G G L V Q P G G AM939713 89.2% 94.6% Q L Q L
V E S G G G L V Q P G G AM939730 93.2% 97.3% E V Q L V E S G G G L
V Q P G G AM939731 91.9% 97.3% E V Q L V E S G G G L V Q P G G
AM939744 86.5% 93.2% Q V Q L V E S G G G L V Q A G G AM939726 93.2%
97.3% Q L Q L V E S G G G L V Q P G G AM939727 93.2% 97.3% Q L Q L
V E S G G G L V Q P G G AM939739 94.6% 97.3% E V Q L V E S G G G L
V Q P G G AM939740 94.6% 98.6% Q L Q L V E S G G G L V Q P G G
AM939741 94.6% 98.6% E V Q L V E S G G G L V Q P G G AM939742 90.5%
95.9% Q V Q L V E S G G G L V Q P G G AM939743 93.2% 97.3% E V Q L
V E S G G G L V Q P G G FR1 CDR1 Name 17 18 19 20 21 22 23 24 25 26
27 28 29 30 31 32 33 34 X92343|IGHV1- S V K V S C K A S G Y T F T S
Y Y M 46*01 LpVH1-s6 S V K V S C K A S G Y T F T S Y Y (AM939701)
LpVH1-s2 S V K V S C K A S G Y T F T S Y Y (AM939697) LpVH1-s3 S L
K V S C K A S G Y T F T S Y Y (AM939698) LpVH1-s4 S L K V S C K A S
G Y T F T S Y Y (AM939699) LpVH1-s5 Ps S V K V S C K A S G Y T F T
S Y Y (AM939700) M99660|IGHV3- S L R L S C A A S G F T F S S Y A M
23*01 AM939712 S L R L S C A A S G F T F S D Y A M AM939713 S L R L
S C A A S G F T F D D Y M AM939730 S L R L S C A A S G F T F S S Y
A M AM939731 S L R L S C A A S G F T F G S Y D M AM939744 S L K H S
C A A S G L T F G S Y D M AM939726 S L R V S C A A S G F T F S S Y
M AM939727 S L R V S C A A S G F T F S S Y Y M AM939739 S L R L S C
A A S G F T F S S Y D M AM939740 S L R L S C A A S G F T F S S Y A
M AM939741 S L R L S C A A S G F T F S S Y A M AM939742 S L R L S C
A A S G F T F S S Y A M AM939743 S L R L S C A A S G F T F S S Y A
M CDR1 FR2 Name 35 35a 35b 35c 36 37 38 39 40 41 42 43 44 45 46 47
48 49 X92343|IGHV1- H W V R Q A P G Q G L E W M G 46*01 LpVH1-s6 D
W V R Q A P G Q G L E W M G (AM939701) LpVH1-s2 D W V R Q A P G Q G
L E W M G (AM939697) LpVH1-s3 D W V R Q A P G Q G L E W M G
(AM939698) LpVH1-s4 D W V R Q A P G Q G L E W M G (AM939699)
LpVH1-s5 Ps D W V * Q A P G Q G L E W M G (AM939700) M99660|IGHV3-
S W V R Q A P G K G L E W V S 23*01 AM939712 S W V R Q A P G K G L
E W V S AM939713 S W V R H S P G K G L E W V S AM939730 S W V R Q A
P G K G L E W V S AM939731 S W V R Q A P G K G L E W V S AM939744 S
W V R Q A P G K G L E W V S AM939726 S W V R Q A P G K G L E W V S
AM939727 S W V R Q A P G K G L E W V S AM939739 S W V R Q A P G K G
L E W V S AM939740 S W V R Q A P G K G L E W V S AM939741 S W V R Q
A P G K G L E W V S AM939742 S W V R H S P G K G L E W V S AM939743
S W V R Q A P G K G L E W V S FR2 Name 50 X92343|IGHV1- 46*01
LpVH1-s6 (AM939701) LpVH1-s2 (AM939697) LpVH1-s3 (AM939698)
LpVH1-s4 (AM939699) LpVH1-s5 Ps (AM939700) M99660|IGHV3- 23*01
AM939712 AM939713 AM939730 AM939731 AM939744 AM939726 AM939727
AM939739 AM939740 AM939741 AM939742 AM939743 % % CDR2 Name Ident
Homol 50 51 52 52a 52b 52c 53 54 55 56 57 58 59 60 61 62
X92343|IGHV1-46*01 I I N P S G G S T S Y A Q K LpVH1-s6 89.2% 91.9%
R I D P E D G G T K Y A Q K LpVH1-s2 89.2% 91.9% R I D P E D G G T
Y A Q K LpVH1-s3 87.8% 90.5% R I D P E D G G T K Y A Q K LpVH1-s4
89.2% 91.9% R I D P E D G G T K Y A Q K LpVH1-s5 P 89.2% 91.9% R I
D P G G T Y A Q K M99660|IGHV3-23*01 A I S G S G G S T Y Y A D S
AM939712 94.6% 98.6% A I S W G G S T Y Y A E S AM939713 89.2% 94.6%
A I S W G G S T Y Y A E S AM939730 93.2% 97.3% A I N S G G G S T Y
Y A D S AM939731 91.9% 97.3% A I N S G G G S T Y Y A D S AM939744
86.5% 93.2% A I N S G G G S T Y Y A D S AM939726 93.2% 97.3% A I N
T G G G S T Y Y A D S AM939727 93.2% 97.3% T I N T G G G S T Y Y A
D S AM939739 94.6% 97.3% A I N S G G G S T Y Y A D S AM939740 94.6%
98.6% A I N S G G G S T S Y A D S AM939741 94.6% 98.6% A I N S G G
G S T S Y A D S AM939742 90.5% 95.9% A I N S G G G S T S Y A D S
AM939743 93.2% 97.3% A I N G G D G S T S Y A D S % CDR2 FR3 Name
Ident 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79
X92343|IGHV1-46*01 F Q G R V T M T R D T S T S T V Y LpVH1-s6 89.2%
F Q G R V T F T A D T S T S T A Y LpVH1-s2 89.2% F Q G R V T F T A
D T S T S T A Y LpVH1-s3 87.8% F Q G R V T F T A D T S T R T A Y
LpVH1-s5 P 89.2% F Q G R V T F T A D T S T S T A Y
M99660|IGHV3-23*01 V K G R F T I S R D N S K N T L Y AM939712 94.6%
M K G R F T I S R D N A K N T L Y AM939713 89.2% M K G R F T I S R
D N A K N T V Y AM939730 93.2% V K G R F T I S R D N A K N T L Y
AM939731 91.9% V K G R F T I S R D N A K N T L Y AM939744 86.5% V K
G R F T I S R D N A K N T L Y AM939726 93.2% V K G R F T I S R D N
A K N T L Y AM939727 93.2% V K G R F T I S R D N A K N T L Y
AM939739 94.6% V K G R F T I S R D N A K N T V Y AM939740 94.6% V K
G R F T I S R D N A K N T L Y AM939741 94.6% V K G R F T I S R D N
A K N T L Y AM939742 90.5% M K G Q F T I S R D N A K N T L Y
AM939743 93.2% V K G R S T I S R D N A K N T L Y % FR3 Name Ident
80 81 82 82a 82b 82c 83 84 85 86 87 88 89 90 91 92 X92343|IGHV1- M
E S S L R S E D T A V Y Y C 46*01 LpVH1-s6 89.2% V E L S S L R S E
G T A V Y Y C LpVH1-s2 89.2% V E L S S L R S E G T P V Y Y C
LpVH1-s3 87.8% V E L S S L R S E G T A V Y Y C LpVH1-s4 89.2% V E L
S S L R S E G T A V Y Y C LpVH1-s5 P 89.2% V E L S S L R S E G T A
V Y Y C M99660|IGHV3- L Q M N S L R A E D T A V Y Y C 23*01
AM939712 94.6% L Q M N S L K S E G T A V Y Y C AM939713 89.2% L Q M
N S L K P E G T A V Y Y C AM939730 93.2% L Q M N S L K P E G T A V
Y Y C AM939731 91.9% L Q M N S L L P E G T A V Y Y C AM939744 86.5%
L Q M N S L K P E G T A V Y Y C AM939726 93.2% L Q M N S L K P E G
T A V Y Y C AM939727 93.2% L Q M N S L K P E G T A V Y Y C AM939739
94.6% L Q M N S L K P E D T A V Y Y C AM939740 94.6% L Q M N S L K
P E G T A V Y Y C AM939741 94.6% L Q M N S L L P E G T A V Y Y C
AM939742 90.5% L Q M N S L K P E G T A V Y Y C AM939743 93.2% L Q M
N S L K P E G T A V Y Y C % % FR1 Name Ident Homol 1 2 3 4 5 6 7 8
9 10 11 12 13 14 15 16 U29481|IGHV3- E V Q L L E S G G G L V Q P G
G 23*03 AM939716 94.6% 97.3% E V Q L V E S G G G L V Q P G G
AM939728 90.5% 94.6% E V R L V E S G G G L V Q P G G AM939738 91.9%
95.9% Q V Q L V E S V G G L V Q D G G AM939710 89.2% 93.2% Q V Q L
V E S G G G L V Q A G G AM939748 93.2% 97.3% Q V Q L V E S G G G L
V Q P G G AM939750 94.6% 98.6% Q V Q L V E T G G G L V Q P G G
AM939751 91.9% 95.9% Q L Q L V E S G G G L V Q P G G AM939767 90.5%
94.6% Q V Q L V E S G G G L V Q P G G AM939768 93.2% 97.3% E V Q L
V E S G G G L V Q P G G AM939707 93.2% 97.3% E V Q L V E S G G G L
V Q P G G AM939708 93.2% 97.3% Q V Q L V E S G G G L V Q P G G
AM939709 91.9% 95.9% E V Q L V E S G G G L V Q P G G AM939732 93.2%
97.3% Q V Q L V E S G G G L V Q P G G AM939733 89.2% 94.6% Q V Q L
V E S G G G L V Q P G G AM939717 90.5% 95.9% Q V Q L V E S G G G L
V Q P G G AM939734 94.6% 97.3% E V Q V V E S G G G L V Q P G G
AM939735 91.9% 97.3% E V Q L V E S G G G L V Q P G G AM939736 93.2%
97.3% Q V Q L V E S G G G L V Q P G G AM939737 94.6% 98.6% Q V Q L
V E S G G G L V Q P G G FR1 CDR1 Name 17 18 19 20 21 22 23 24 25 26
27 28 29 30 31 32 33 34 U29481|IGHV3- S L R L S C A A S G F T F S S
Y M M 23*03 AM939716 S L R L S C A A S G F T F S S S M M AM939728 S
L R L S C A A S G F T F S S S M M AM939738 S L R L S C A A S G R T
F S S S M M AM939710 S L R L S C A A S G L T F S S Y M M AM939748 S
L R L S C A A S G L T F S S Y Y M AM939750 S L R L S C A A S G F T
F S S S A M AM939751 S L R L S C A A S G F T F S S Y A M AM939767 S
L R L S C A A S G F T F S S Y A M AM939768 S L R L S C A A S G F T
F S S Y D M AM939707 S L R L S C A A S G F T F S S Y A M AM939708 S
L R L S C A A S G F T F S S Y A M AM939709 S L R L S C A A S G L T
F S S Y Y M AM939732 S L R L S C A A S G F T F S S Y D M AM939733 S
L R L S C A A S G F T L G S Y D M AM939717 S L R L S C A A S G F T
F G S Y D M AM939734 S L R L S C A A S G F T F S S Y A M AM939735 S
L R L S C A A S G F T F D N Y A M AM939736 S L R L S C A A S G F T
F S S Y A M AM939737 S L R L S C A A S G F T F S S Y A M CDR1 FR2
Name 35 35a 35b 35c 36 37 38 39 40 41 42 43 44 45 46 47 48 49
U29481|IGHV3- S W V R Q A P G K G L E W V S 23*03 AM939716 S W V R
Q A P G K G L E W V S
AM939728 S R V R Q V P G K G L E W V S AM939738 S W V R Q A P G K G
L E W V S AM939710 S W V R Q A P G K G L E W V S AM939748 S W V R Q
A P G K G L E W V S AM939750 S W V R Q A P G K G L E W V S AM939751
G W A R Q V P G K G L E W V S AM939767 G W A R Q V P G K G L E W V
S AM939768 S W V R Q A P G K G L E W V S AM939707 S W V R Q A P G K
G L E S V S AM939708 S W V R Q A P G K G L E S V S AM939709 S W V R
Q A P G K G L E S V S AM939732 S W V R Q A P G K G P E W V S
AM939733 S W V R Q A P G K G P E W V S AM939717 S W V R R A P G K G
L E W V S AM939734 S W V R Q A P G K G L E W V S AM939735 S W V R Q
A P G K G L E W V S AM939736 S W V R R A P G K G L E W V S AM939737
S W V R Q A P G K G L E W V S Name U29481|IGHV3- V 23*03 AM939716 S
AM939728 S AM939738 S AM939710 T AM939748 G AM939750 G AM939751 G
AM939767 G AM939768 G AM939707 S AM939708 S AM939709 T AM939732 D
AM939733 C AM939717 Y AM939734 Y AM939735 Y AM939736 Y AM939737 D %
% CDR2 Name Ident Homol 50 51 52 52a 52b 52c 53 54 55 56 57 58 59
60 61 62 U29481|IGHV3- V I Y S G G S S T Y Y A D S 23*03 AM939716
94.6% 97.3% S I Y S Y S S N T Y Y A D S AM939728 90.5% 94.6% S I Y
S Y S S N T Y Y A D S AM939738 91.9% 95.9% S I Y S Y S S N T Y N A
D S AM939710 89.2% 93.2% T I N S D G S N T Y Y A D S AM939748 93.2%
97.3% G I Y S D G S D T Y Y A D S AM939750 94.6% 98.6% G I Y S D G
S D T Y Y A D S AM939751 91.9% 95.9% G I Y S D G S -- T Y Y A D S
AM939767 90.5% 94.6% G I Y S D G S -- T Y Y A D S AM939768 93.2%
97.3% G I Y S D G S -- T Y Y A D S AM939707 93.2% 97.3% S I Y S Y S
S N T Y Y A D S AM939708 93.2% 97.3% S I Y S Y S S N T Y Y A D S
AM939709 91.9% 95.9% T I Y S Y G G N T Y Y A D S AM939732 93.2%
97.3% D I N S G G G S T Y Y A D S AM939733 89.2% 94.6% I N S G G G
S T Y Y A D S AM939717 90.5% 95.9% Y I N S G G G S T Y Y A D S
AM939734 94.6% 97.3% Y I N S G G G S T Y Y A D S AM939735 91.9%
97.3% Y I N S G G G S T Y Y A D S AM939736 93.2% 97.3% Y I N S G G
G S T Y Y A D S AM939737 94.6% 98.6% D I N S G G G S T Y Y A D S
CDR2 FR3 Name 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80
U29481|IGHV3- V K G R F T I S R D N S K N T L Y L 23*03 AM939716 V
K G R F T I S T D N A K N T L Y L AM939728 V K G R F T I S T D N A
K N T L Y L AM939738 V K G R F T I S R D N A K N T L Y L AM939710 V
K G R F T I S R D N A K N T L Y L AM939748 V E G R F T I S R D N A
K N T L Y L AM939750 V K G R F T I S R D N A K N T L Y L AM939751 V
K G R F T I S R D N A K N T L Y L AM939767 V K G R F T I S R D N A
K N T V Y L AM939768 V K G R F T I S R D N A K N T V Y L AM939707 V
K G R F T I S R D N A K N T L Y L AM939708 V K G R F T I S R D N A
K N T L Y L AM939709 V K G R F T I S R D N A K N T L Y L AM939732 V
K G R F T I S R D N A K N T L Y L AM939733 V K G R F T I S R D N A
K N T V Y L AM939717 V K G R F T I S R D N A K N T V Y L AM939734 V
K G R F T I S R D N A K N T V Y L AM939735 V K G R F T I S R D N A
K N T V Y L AM939736 V K G R F T I S R D N A K N T L Y L AM939737 V
K G R F T I S R D N A K N T L Y L FR3 Name 81 82 82a 82b 82c 83 84
85 86 87 88 89 90 91 92 U29481|IGHV3- Q M N S L R A E D T A V Y Y C
23*03 AM939716 Q M N S L K S E D T A V Y Y C AM939728 Q M N S L K S
E G T A V Y Y C AM939738 Q M N S L K P E G T A V Y Y C AM939710 Q M
N S L K P D G T A V Y Y C AM939748 Q M N S L K P E G T A V Y Y C
AM939750 Q M N S L K P E G T A V Y Y C AM939751 Q M N S L K S E G T
A V Y Y C AM939767 Q M N S L K P E G T A V Y Y C AM939768 Q M N S L
K P E G T A V Y Y C AM939707 Q M N S L K S E D M A V Y Y C AM939708
Q M N S L K S E G T A V Y Y C AM939709 Q M N S L K P E G T A V Y Y
C AM939732 Q M N S L K P E G T A V Y Y C AM939733 Q M N S L K P E G
T A V Y Y C AM939717 Q M N S L K P E G T A V Y Y C AM939734 Q M N S
L K P E D T A V Y Y C AM939735 Q M N S L K P E G T A V Y Y C
AM939736 Q M N S L K P E G T A V Y Y C AM939737 Q M N S L K P E G T
A V Y Y C % % FR1 Name Ident Homol 1 2 3 4 5 6 7 8 9 10 11 12 13 14
15 16 L33851|IGHV3- E V Q L V E S G G G L V Q P G G 74*01 AM939749
94.6% 98.6% Q V Q L V E S G G G L V Q P G G AM939724 93.2% 98.6% Q
V Q L V E S G G G L V Q P G G AM939725 89.2% 95.9% Q L Q L V E S G
G G L V Q P G G AM939745 87.8% 93.2% E V Q L V E S G G G L V Q P G
G AM939723 93.2% 97.3% Q L Q L V E S G G G L V Q P G G
X92229|IGHV4- Q L Q L Q E S G S G L V K P S Q 30-2*03 LpVH2-s7
78.4% 81.1% Q V Q L Q E S G P G L V K P S Q (AM939704)
Z14238|IGHV4- Q V Q L Q E S G P G L V K P S Q 30-4*01 LpVH2-s2
86.5% 86.5% E V Q L Q E S G P G L V K P S Q (AM939769) LpVH2-s3
82.4% 82.4% E V Q V Q E S G P G L V K P S Q (AM939770) LpVH2-s4
82.4% 82.4% Q V Q R Q E S G P G L V K P S Q (AM939771) LpVH2-s5
87.8% 87.8% Q V Q L Q E S G P G L V K P S Q (AM939772) LpVH2-s6
82.4% 86.5% E V Q L Q E S G P G L L K P S Q (AM939773) LpVH2-s11 Ps
82.4% 82.4% Q V Q L Q E S G P D L V K P S Q (AM939703) LpVH2-s8
82.4% 82.4% Q V Q L Q E S G P G L V K P S Q (AM939705) LpVH2-s9 Ps
83.8% 83.8% Q V Q L * E S G P G L V K P S Q (AM939706) LpVH2-s10
83.8% 83.8% E V Q L Q E S G P G L V K P S Q (AM939702) FR1 CDR1
Name 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34
L33851|IGHV3- S L R L S C A A S G F T F S S Y W M 74*01 AM939749 S
L R L S C A A S G F T F S S Y W M AM939724 S L R L S C A A S G F T
F S S Y W M AM939725 S L R L S C A A S G F T F G S Y W M AM939745 S
L R L S C A A S G F T F G S Y V L AM939723 S L R L S C A A S G F T
F S S Y W M X92229|IGHV4- T L S L T C A V S G G S I S S G G Y
30-2*03 LpVH2-s7 T L S L T C A V Y G G S I T T S C Y (AM939704)
Z14238|IGHV4- T L S L T C T V S G G S I S S G D Y 30-4*01 LpVH2-s2
T L S L T C T V S G G S I T T S Y Y (AM939769) LpVH2-s3 A L S L T C
T A S G G S N T T S Y (AM939770) LpVH2-s4 M L S L T C T A S G G S N
T T S Y Y (AM939771) LpVH2-s5 T L S L T C T V S G G S I T T S Y Y
(AM939772) LpVH2-s6 T L S L T C A V Y G G S I T T S Y Y (AM939773)
LpVH2-s11 Ps M L S L T C T V S G G S N T T S Y Y (AM939703)
LpVH2-s8 T L S L T C T A S G G S N T T S Y Y (AM939705) LpVH2-s9 Ps
T L S L T C T V S G G S I T T S C Y (AM939706) LpVH2-s10 M L S L T
C T L S G G S I T T S C Y (AM939702) CDR1 FR2 Name 35 35a 35b 35c
36 37 38 39 40 41 42 43 44 45 46 47 48 49 L33851|IGHV3- H W V R Q A
P G K G L V W V S 74*01 AM939749 N W V R Q A P G K G L E W V S
AM939724 N W V R Q A P G K G L E W V S AM939725 Y W V R Q A P G K G
L E W V S AM939745 W V C H S P G K G L E W V S AM939723 N W V R Q A
P G K G L E W V S X92229|IGHV4- S W S W I R Q P P G K G L E W I G
30-2*03 LpVH2-s7 A W S C I C Q P P E K G L E W M A (AM939704)
Z14238|IGHV4- Y W S W I R Q P P G K G L E W I G 30-4*01 LpVH2-s2 A
W S W I R Q P P G K G L E W M G (AM939769) LpVH2-s3 A W S W I R Q P
P G K G L E W M G (AM939770) LpVH2-s4 A W S W I R Q P P G K G L E W
M G (AM939771) LpVH2-s5 Y W S W I R Q P P G K G L E W M G
(AM939772) LpVH2-s6 Y W S W I R Q P P G K G L E W M G (AM939773)
LpVH2-s11 Ps A W S W I R Q P P G K G L E * M G (AM939703) LpVH2-s8
A W S W I R Q P P G K G L E W M G (AM939705) LpVH2-s9 Ps A W S W I
H Q P P G K G L E * M G (AM939706) LpVH2-s10 A W S W I R Q P P G K
G L E W M G (AM939702) % % CDR2 Name Ident Homol 50 51 52 52a 52b
52c 53 54 55 56 57 58 59 60 61 62 L33851|IGHV3- R I N S D G S S T S
Y A D S 74*01 AM939749 94.6% 98.6% G I Y S D G S D T Y Y A D S
AM939724 93.2% 98.6% A I N S G G G S T S Y A D S AM939725 89.2%
95.9% A I N S G G G S T S Y A D S AM939745 87.8% 93.2% A I N S C G
G S T S Y A D S AM939723 93.2% 97.3% A I N S G G G S T Y Y A D S
X92229|IGHV S I Y Y S G S T Y Y N P S 4-30-2*03 LpVH2-s7 78.4%
81.1% A I -- Y S G S T Y Y S P S (AM939704) Z14238|IGHV4- Y I Y Y S
G S T Y Y S P S 30-4*01 LpVH2-s2 86.5% 86.5% A I A Y S G S T Y Y S
P S (AM939769) LpVH2-s3 82.4% 82.4% A I A Y S G S T Y Y S P S
(AM939770) LpVH2-s4 82.4% 82.4% A I A Y D G S T Y Y S P S
(AM939771) LpVH2-s5 87.8% 87.8% A I A Y D G S T Y Y S P S
(AM939772) LpVH2-s6 82.4% 86.5% A I A Y D G S T Y Y S P S
(AM939773) LpVH2-s11 Ps 82.4% 82.4% A I -- Y S G S T Y Y S P S
(AM939703)
LpVH2-s8 82.4% 82.4% A I -- Y S G S T Y Y S P S (AM939705) LpVH2-s9
Ps 83.8% 83.8% A I -- Y S G S T Y Y S P S (AM939706) LpVH2-s10
83.8% 83.8% A I -- Y S G S T Y Y S P S (AM939702) CDR2 FR3 Name 63
64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 L33851|IGHV3- V
K G R F T I S R D N A K N T L Y L 74*01 AM939749 V K G R F T I S R
D N A K N T L Y L AM939724 M K G Q F T I S R D N A K N T L Y L
AM939725 M K G Q F T I S S D N A R N T L Y L AM939745 V K G R F T I
S R D N A K N T V Y L AM939723 V K G R F T I S R D N A K N T V Y L
X92229|IGHV4- L K S R V T I S V D T S K N Q F S L 30-2*03 LpVH2-s7
L K S H T S I S R D T S K N Q F S L (AM939704) Z14238|IGHV4- L K S
R V T I S V D T S K N Q F S L 30-4*01 LpVH2-s2 L K S R T S I S R D
T S N N Q F S L (AM939769) LpVH2-s3 L K S R T S I S R D T S N N Q F
S L (AM939770) LpVH2-s4 L K S H T S I S R D T S K N Q F S L
(AM939771) LpVH2-s5 L K S R T S I S R D T S K N Q F S L (AM939772)
LpVH2-s6 L K S H T S I S R D T S K N Q F S L (AM939773) LpVH2-s11
Ps L K S R T S I S R D T S K N Q F S L (AM939703) LpVH2-s8 L K S R
T S I S R D T S N N Q F S L (AM939705) LpVH2-s9 Ps L K S H T S I S
R D T S K N Q F S L (AM939706) LpVH2-s10 L K S R T S I S R D T S K
N Q F S L (AM939702) FR3 Name 81 82 82a 82b 82c 83 84 85 86 87 88
89 90 91 92 L33851|IGHV3- Q M N S L R A E D T A V Y Y C 74*01
AM939749 Q M N S L K P E G T A V Y Y C AM939724 Q M N S L K P E G T
A V Y Y C AM939725 Q M N S L K P E G T A V Y Y C AM939745 Q M N S L
K P E G T A V Y Y C AM939723 Q M N S L K P E G T A V Y Y C
X92229|IGHV4- K L S S V T A A D T A V Y Y C 30-2*03 LpVH2-s7 Q L S
S V T P E G T A V Y Y C (AM939704) Z14238|IGHV4- K L S S V T A A D
T A V Y Y C 30-4*01 LpVH2-s2 Q L S S V T P E G T A V Y Y C
(AM939769) LpVH2-s3 Q L S S V T P E G T A V Y Y C (AM939770)
LpVH2-s4 Q L S S V T P E G T A V Y Y C (AM939771) LpVH2-s5 Q L S S
V T P E G T A V Y Y C (AM939772) LpVH2-s6 Q L S S V T P E G T A V Y
Y C (AM939773) LpVH2-s11 Ps Q L S S V T P E G T A V Y Y C
(AM939703) LpVH2-s8 Q L S S V T P E G T A V Y Y C (AM939705)
LpVH2-s9 Ps Q L S S V T P E G T A V Y Y C (AM939706) LpVH2-s10 Q L
S S V T P E G T A V Y Y C (AM939702) Color codes Residue found in
closest matching germline Residue found in other germlines of the
same subclass (VH3, VH4, . . . ) Residue found in other germlines
of the same class (VH, VK, or VL) Residue not found in other
germlines of the same class (VH, VK, or VL) Primer-encoded residue
Scores % Identity: fraction of framework residues which is found in
the closest matching germline % Homology: fraction of framework
residues which is found in the closest matching germline or other
germlines of the same subclass indicates data missing or illegible
when filed
TABLE-US-00010 10.11 Lama glama derived VH analysis (SEQ ID NOS:
326-332) Name % Ident % Homol 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
16 17 18 19 AJ879486|IGHV3- E V Q L V E S G G G L V Q P G G S L R
23*04 S-VH1 88.5% 93.1% E V Q L V E S G G G L V Q P G G S L R S-VH3
87.4% 90.8% E V Q L V Q S G G G L V Q H G G S L R S-VH4 92.0% 96.6%
E Q L V E S G G G L V Q P G G S L R L33851|IGHV3- E V Q L V E S G G
G L V Q P G G S L R 74*01 S-VH2 93.2% 95.5% E V Q L V E S G G G L V
Q P G G S L R S-VH6 93.1% 96.6% E V Q L V E S G G G L V Q P G G S L
R S-VH5 93.1% 96.6% E V Q L V E S G G G L V Q P G G S L R Name 20
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
AJ879486|IGHV3- L S C A A S G F T F S S Y A M S W V R Q A 23*04
S-VH1 L S C A A S G F T F G R Y A M S W V R Q A S-VH3 L S C A A S G
F A F S S A G M S W V R Q A S-VH4 L S C A A S G F T F G S Y D M Y W
V R Q A L33851|IGHV3- L S C A A S G F T F S S Y W M H W V R Q A
74*01 S-VH2 L S C A A S G F T F S S Y Y M S W V R Q A S-VH6 L S C A
A S G F T F S S A V M S W V R Q A S-VH5 L S C A A S G F T F S S A V
M S W V R Q A Name 41 42 43 44 45 46 47 48 49 50 51 52 52a 53 54 55
56 57 58 59 60 AJ879486|IGHV3- P G K G L E W V S A I S G S G G S T
Y Y A 23*04 S-VH1 P G K G P E W V S A I S W N S G R I Y D A S-VH3 P
G K G L E G V S A I N T R S G T T Y Y A S-VH4 P G K G P E W V S A I
R R G G G S T Y Y A L33851|IGHV3- P G K G L V W V S R I N S D G S S
T S Y A 74*01 S-VH2 P G K G L E W V S S I Y S D G S Y T Y Y A S-VH6
P G K G L E W V S G I G S G G S T T S Y A S-VH5 P G K G L E W V S T
I G A A G S T T S Y A Name 61 62 63 64 65 66 67 68 69 70 71 72 73
74 75 76 77 78 79 80 81 AJ879486|IGHV3- D S V K G R F T I S R D N S
K N T L Y L Q 23*04 S-VH1 E S M K G R F T V S R D N T K N T L Y L Q
S-VH3 D F T K G R F T I S R D N A K N T V Y L Q S-VH4 D S V K G R F
T I S R D N A K N T L Y L Q L33851|IGHV3- D S V K G R F T I S R D N
A K N T L Y L Q 74*01 S-VH2 D S V K G R F T I S R D N A K N T L Y L
Q S-VH6 D S V K G R F T I S R D N A K N T L Y L Q S-VH5 D S V K G R
F T I S R D N A K N T L Y L Q Name 82 82a 82b 82c 83 84 85 86 87 88
89 90 91 92 93 94 95 96 97 98 99 AJ879486|IGHV3- M N S L R A E D T
A V Y Y C A K 23*04 S-VH1 M N A L K D D T A V Y Y C A R S T A E S
S-VH3 M N S L K P E D T A V Y Y C N A G F P S S-VH4 M N S L P E D T
A V Y Y C A K P S T I A L33851|IGHV3- M N S L R A E D T A V Y Y C A
R 74*01 S-VH2 M N S L S E D T A V Y Y C A N W D Y S G S-VH6 M N S L
P E D T A V Y Y C G R G F S-VH5 M N S L K P E D T A V Y Y C G R G G
Name 100 100a 100b 100c 100d 100e 100f 100g 101 102 103 104 105 106
107 108 109 110 111 112 113 AJ879486|IGHV3- 23*04 S-VH1 N W I P L D
W G Q G T Q V T V S S S-VH3 R Y W G Q G T Q V T V S S S-VH4 T I L F
T S W G Q G T Q V T V S S L33851|IGHV3- 74*01 S-VH2 S Y Y A P A T F
G S W G Q G T R V T V S S S-VH6 S S W G Q G T Q V T V S S S-VH5 S S
W G Q G T Q V T V S S indicates data missing or illegible when
filed
TABLE-US-00011 10.12 Lama glama derived VL analysis (SEQ ID NOS:
333-346) Lamda % Name Homol 1 2 3 4 5 6 7 8 9 11 12 13 14 15 16 17
D86994|IGLV3-25*02 S Y E L T Q P P S V S V S P G Q VL25-28 91.3% N
F M L T Q P S A L S V T L G Q Z73672|IGLV5-37*01 Q P V L T Q P P S
S S A S P G E VL2, 12, 15 97.5% Q A V L T Q P P S L S A S P G S
Z73650|IGLV8-61*01 Q T V V T Q E P S F S V S P G G VL3, 5 90.0% Q A
V V T Q E P S L S V S P G G VL17-24, 29-32 90.0% Q A V V T Q E P S
L S V S P G G VL10 91.3% S S E L T Q E P S L S V S P G G VL4, 6, 8,
9, 13, 14 97.5% S Y E L T Q O P S L S V S P G E Lamda Name 18 19 20
21 22 23 24 25 26 27 27a 27b 27c 28 29 30 31 D86994|IGLV3-25*02 T A
R I T C S G D A L P K Q VL25-28 T A K I T C Q G G S L G S S
Z73672|IGLV5-37*01 S A R L T C T L P S D I N V G S Y VL2, 12, 15 S
V R L T C T L S S G N S V G S Y Z73650|IGLV8-61*01 T V T L T C G L
S S G S V S T S Y VL3, 5 T V T L T C G L S S G S V T S S N VL17-24,
29-32 T V T L T C G L S S G S V T T S N VL10 T V T L T C G L S S G
S V T S S N VL4, 6, 8, 9, 13, 14 T V T L T C G L N S G S V T S H N
Lamda Name 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48
D86994|IGLV3-25*02 Y A Y W Y Q Q K P G Q A P V L V I VL25-28 Y A H
W Y Q Q K P G Q A P V L V I Z73672|IGLV5-37*01 N I Y W Y Q Q K P G
S P P R Y L L VL2, 12, 15 D I S W Y Q Q K A G S P P R Y L L
Z73650|IGLV8-61*01 Y P S W Y Q Q T P G Q A P R T L I VL3, 5 Y P G W
Y Q Q K P G Q A P R T L I VL17-24, 29-32 Y A A W F Q Q A P G Q A P
R T L I VL10 Y P G W Y Q Q K P G Q A P R T L I VL4, 6, 8, 9, 13, 14
Y P A W Y Q Q K P G Q A P R T L M Lamda Name 49 50 51 51a 51b 51c
51d 52 53 54 55 56 57 58 59 60 61 D86994|IGLV3-25*02 Y K D S E R P
S G I P E R VL25-28 Y D D D S R P S G I P E R Z73672|IGLV5-37*01 Y
Y Y S D S D K G Q G S G V P S R VL2, 12, 15 Y Y Y S D S F N H Q G S
G V P S R Z73650|IGLV8-61*01 Y S T N T R S S G V P D R VL3, 5 Y N T
N S R Y S G V P N R VL17-24, 29-32 Y K T N S R H S G V P S R VL10 Y
N T N S R Y S G V P N R VL4, 6, 8, 9, 13, 14 Y N T N S R Y P M V P
P R Lamda Name 61 62 63 64 65 66 67 68 68a 68b 69 70 71 72 73 74 75
D86994|IGLV3-25*02 R F S G S S S G T T V T L T I VL25-28 R F S G S
S S G G R A T L T I Z73672|IGLV5-37*01 R F S G S K D A S A N T G I
L L I VL2, 12, 15 R F S G S K D A S A N A G L L L I
Z73650|IGLV8-61*01 R F S G S I L G N K A A L T I VL3, 5 R F S G S I
S G N K A V L T I VL17-24, 29-32 R F S G S I S G N K A A L T I VL10
R F S G S I S G N K A A L T I VL4, 6, 8, 9, 13, 14 R F S G S I F G
N K A A L T I Lamda Name 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90 91 92 D86994|IGLV3-25*02 S G V Q A E D E A D Y Y C Q S A D
VL25-28 S G A Q A E D E G D Y Y C Q S A D Z73672|IGLV5-37*01 S G L
Q S E D E A D Y Y C M I W P VL2, 12, 15 S G L Q P E D E A D Y Y C S
A Y K Z73650|IGLV8-61*01 T G A Q A D D E S D Y Y C V L Y M VL3, 5 T
G A Q P E D E A D Y Y C A V Y T VL17-24, 29-32 T G A Q P E D E A D
Y Y C S L Y P VL10 T G A Q P E D E A D Y Y C A V Y I VL4, 6, 8, 9,
13, 14 T G A Q A E D E A D Y Y C A V Y I Lamda Name 93 94 95 95a
95b 95c 96 97 98 99 100 101 102 103 104 105 106 D86994|IGLV3-25*02
S S G T Y VL25-28 S S G N A V F G G G T H L T V Z73672|IGLV5-37*01
S N A S VL2, 12, 15 S G S Y N P T F G G G T K L T V
Z73650|IGLV8-61*01 G S G I VL3, 5 G S S N Y P A V F G G G T H L T V
VL17-24, 29-32 G S D I V F G G G T H L T V VL10 G S G G V F G G G T
K L T V VL4, 6, 8, 9, 13, 14 R S R T L E F G G G T H L T V Lamda
Name 107 D86994|IGLV3-25*02 VL25-28 L Z73672|IGLV5-37*01 VL2, 12,
15 L Z73650|IGLV8-61*01 VL3, 5 L VL17-24, 29-32 L VL10 L VL4, 6, 8,
9, 13, 14 L Kappa % % Name Indent Homol 1 2 3 4 5 6 7 8 9 10 11 12
13 14 15 U41644|IGKV2D-29*02 D I V M T Q T P L S L S V T P KAPPA
33-36, 38, 39, 42, 4 86.3% 90.0% D I V M T Q T P G S L S V V P
KAPPA 41, 43, 44 86.3% 90.0% D I V M T Q T P G S L S V V P KAPPA
40, 44 86.3% 90.0% D I V M T Q T P G S L S V V P KAPPA 37, 46, 48
83.3% 90.0% E I V L T T P G S L S V V P Kappa Name 16 17 18 19 20
21 22 23 24 25 26 27 27a 27b 27c 27d 27e U41644|IGKV2D-29*02 G Q P
A S I S C K S S Q S L L H S KAPPA 33-36, 38, 39, 42, 4 G E S A S I
S C K A S Q S L V H S KAPPA 41, 43, 44 G E S A S I S C K A S Q S L
V H S KAPPA 40, 44 G E S A S I S C K A S Q S L V L S KAPPA 37, 46,
48 G E S A S I S C K A S Q S L V R S Kappa Name 28 29 30 31 32 33
34 35 36 37 38 39 40 41 42 43 44 U41644|IGKV2D-29*02 D G K T Y L Y
W Y L Q K P G Q S P KAPPA 33-36, 38, 39, 42, 4 D G K T Y L Y W L L
Q K P G Q S P KAPPA 41, 43, 44 D G K T Y L Y W L L Q K P G Q S P
KAPPA 40, 44 G G K T Y L Y W L L Q K P G Q S P KAPPA 37, 46, 48 D G
K T Y L Y W L L Q K P G Q S P Kappa Name 45 46 47 48 49 50 51 52 53
54 55 56 57 58 59 U41644|IGKV2D- Q L L I Y E V S N R F S G V P
29*02 KAPPA 33-36, Q R L I Y Q V S N R G S G V P 38, 39, 42, 4
KAPPA 41, 43, 44 Q R L I Y Q V S N R G S G V P KAPPA 40, 44 Q R L I
Y Q V S N R G S G V P KAPPA 37, 46, 48 Q R L I Y Q V S N R G S G V
P
Example 11
Analysis of Key Residues for Canonical Folds of H1 and H2 and
Comparison of H1 and H2 Residues with Human Germline
[0287] Structural analysis of antibodies revealed the relationship
between the sequence and the shape of the binding site formed by
the complementarity determining regions (Chothia and Lesk, J. Mol.
Biol. 196:901-917 (1987); Tramontano et al., J. Mol. Biol.
215:175-82 (1990)). Despite their high sequence variability, five
of the six loops adopt just a small repertoire of main-chain
conformations, called "canonical structures". These conformations
are first of all determined by the length of the loops and secondly
by the presence of key residues at certain positions in the loops
and in the framework regions that determine the conformation
through their packing, hydrogen bonding or the ability to assume
unusual main-chain conformations.
[0288] We have analyzed the predicted canonical structures of H1
and H2 for the germline dromedary and llama VH segments based on
the length of these loops and the presence of the previously
mentioned key residues. The comparison was made with the key
residues as they occur in the closest matching human germline in
terms of the presence of identical combination of canonical folds
and overall sequence homology (Table 1); in addition the amino
acids compatible with the corresponding canonical fold as proposed
by Morea and colleagues (Morea et al., Methods 20:267-279 (2000))
are shown. For the dromedary germline VH family IGHV1S(1-19), which
has canonical fold 1 for H1 (coded as H1: 1 in Table 1) and fold 1
for H2 (H2: 1), and family IGHV1S(20, 22, 23, 24) with fold 1 for
H1 (H1: 1) and fold 3 for H2 (H2: 3), and family IGHV1S(21, 25-39)
with fold 1 for H1 (H1: 1) and fold 2 for H2 (H2: 2) and llama
germline IGHV1S8 with fold 1 for H1 (H1: 1) and fold 2 for H2 (H2:
2), the key residues 24, 26, 27, 29, 34 and 94 for the canonical
fold of H1 are shown along with these from the analogue human
germline family with the same canonical fold combination (upper
part of Table 1). Also for dromedary germline VH family
IGHV1S(1-19) with fold 1 for H1 (H1: 1) and fold 1 for H2 (H2: 1),
and family IGHV1S(20, 22, 23, 24) with fold 1 for H1 (H1: 1) and
fold 3 for H2 (H2: 3), and family IGHV1S(21, 25-39) with fold 1 for
H1 (H1: 1) and fold 2 for H2 (H2: 2) and llama germline IGHV1S8
with fold 1 for H1 (H1: 1) and fold 2 for H2 (H2: 1) the key
residues 52a or 54 or 55 in combination with residue 71 are shown
along with these from the analogue human germline families with the
same canonical fold combinations (lower part Table 1).
[0289] The analysis clearly demonstrates the "human nature" of the
canonical loops, since the key residues found in the camelid VH
segments are identical to what is found in the corresponding human
VH segments. For example, all 19 germline VH segments from
dromedary coded IGHV1S(1-19) have Alanine on position 19, Glycine
on 26, Phenylalanine on 27 and 29 and Methionine on 34 as they
predominantly occur in human germline family 3 members, which like
these dromedary germline sequences have a canonical fold type 1 for
H1 and fold type 1 for H2. Position 94 is encoded only in a single
germline dromedary (out of the total of 39 germline VH segments)
meaning that a proper analysis is not possible. Nguyen and
colleagues (Nguyen et al., EMBO J. 19:921-930 (2000)) noticed that
the dromedary germline VH and VHH segments "span from the conserved
octamer (i.e. recombination signal) to the Cysteine residue 92 of
FR3" (end of citation), whereas the human segments encode two
additional residues (93 and 94). However, we will discuss this
residue during the analysis of the only six known somatically
mutated VH segments derived from llama derived conventional
antibodies.
[0290] There are virtually no exceptions for the perfect match with
the human germline segments and the key residues proposed by Morea
and colleagues (Morea et al., Methods 20:267-279 (2000)), besides
residue 52a for llama germline IGHV1S6 for canonical fold type 2
for loop H2, which has Serine on this position, while the human
analogue uses Threonine. It is encouraging to observe that in four
of the six published llama VH derived from somatically mutated
conventional antibodies (Vu et al., Mol. Immunol. 34:1121-31 (1997)
Threonine is found on position 52a. It is worthwhile to mention
that Serine and Threonine are closely related, since they both have
a polar hydroxyl group and small sidegroups, suggesting that it
might be possible to exchange both residues during
humanization.
[0291] Glutamine on position 71, which occurs in 1 out of 19
dromedary germline VH segments with a canonical fold type 1 for
loop H2 and in 4 out of 16 dromedary germline VH with a canonical
fold type 2 for H2, seems to be rather extraordinary. The H2 loop
packs against the residue at site 71 and the position of the loop
relative to the framework is mainly determined by the size of the
residue at this site. Canonical structures 2 and 3 are found in H2
loops with 6 residues. Structure 2 occurs when residues 52a and 71
are small or medium sized hydrophobic residues, while canonical
fold 3 occurs when residue 71 is Arginine or Lysine. It can not be
predicted how often the dromedary germline segments with Glutamine
on position 71 will be used in somatically mutated conventional
antibodies, but the humanization of this residue in antibody leads
with this particular residue needs to be carefully examined. The
presence of Arginine and Glutamine on position 71 in the dromedary
IGHV1S(20, 22, 23, 24) family members with canonical fold 2 for H2
is rather unexpected, but on the other hand human germline VH1
family members VH1-9, VH1-10 and VH1-11 with canonical fold 2 for
H2 have Arginine as well, while VH5 member 5-1 with fold 2 for H2
carries Glutamine on this position.
[0292] As Chothia and colleagues did when discussing the structural
repertoire of the human VH segments (Chothia et al., J. Mol. Biol.
227:799-817 (1992)) we examined the individual amino acid residues
of the H1 and H2 loops of the dromedary and llama VH segments along
with the key residues and compared these with the human
counterparts having the same canonical fold combination (Table 2).
For dromedary germline VH family IGHV1S(1-19) with canonical fold 1
for H1 and fold 1 for H2, and family IGHV1S(20, 22, 23, 24) with
fold 1 for H1 (H1: 1) and fold 3 for H2 (H2: 3), and family
IGHV1S(21, 25-39) with fold 1 for H1 (H1: 1) and fold 2 for H2 (H2:
2) and llama germline IGHV1S8 with fold 1 for H1 and fold 2 for H2
the H1 residues 26 to 33 and the are shown together with the key
residues 24 and 94 located outside of H1 (Table 2A). In addition,
for dromedary germline VH family IGHV1S(1-19) with canonical fold 1
for H1(H1: 1) and fold 1 for H2 (H2: 1), and family IGHV1S(20, 22,
23, 24) with fold 1 for H1 (H1: 1) and fold 3 for H2 (H2: 3), and
family IGHV1S(21, 25-39) with fold 1 for H1 (H1: 1) and fold 2 for
H2 (H2: 2) and llama germline IGHV1S8 with fold 1 for H1 (H1: 1)
and fold 2 for H2 (H2: 2) the H2 residues 52 to 56 were analyzed
with key residue 71, which is located outside H2 (Table 2B).
[0293] It is surprising to see the very high degree of sequence
homology in the variable loops, especially in H1 there are hardly
differences with the relevant human sequences. For instance,
germline dromedary family IGHV1S(1-19) with canonical fold
combination H1: 1/H2: 1 contains predominantly Alanine on position
24, Glycine on 26, Phenylalanine on 27, Threonine on 28,
Phenylalanine on 29, Serine on 30 and 31, Tyrosine on 33,
Methionine on 34 and Serine on 35, which completely match the human
germline family 3 members that share the same combination of H1 and
H2 canonical folds. Exceptions are residue 27 (Phenylalanine) and
32 (Serine) of the only publicly known llama germline VH segment,
but again in 4 out of 6 somatically mutated llama VH which are
publicly known (Vu et al., Mol. Immunol. 34:1121-1131 (1997)).
Tyrosine is present on 32 as is found in the analogue human
germlines. The same high degree of sequence homology is found for
the H2 loops of dromedary germline VH segments with the exception
of residue 54 of family IGHV1S(1-19). Especially dromedary family
IGHV1S(21, 25-39) deviates on a number positions in the H2 loop
(i.e. 53, 54, 56 and 58). The H2 loop of the llama germline VH
segment with the same fold scores much better, but as well contains
a number of deviating residues on position 50, 52, 52a, 54, 55 and
58, but the interpretation is rather difficult, since the analysis
was performed with the only known germline segment. The analysis of
somatically mutated VH derived from llama shows that certain
residues on these positions occur, which also appear in the
corresponding human germline sequences, although infrequently (f.i.
Glycine on 50, Asparagine on 52 and 58, Threonine on 52a and
Glycine on 55).
[0294] We also analyzed the panel of six publicly known somatically
mutated VH sequences from llama (Vu et al., Mol. Immunol.
34:1121-31 (1997)). Below the alignment with human VH3 member 3-23
is shown, demonstrating a very high degree of sequence homology:
overall, only 3 deviating residues were observed, one of which is
encoded by the primer used for amplification, while the other two
occur in human germlines of the same class. Even the CDRs show to
have a very high degree of sequence homology: CDR1 is probably
identical, while only three residues of CDR2 are different.
Canonical fold analysis reveals that two VH have fold 1 for H1 and
fold 2 for H2, as was observed for the only available llama derived
germline VH, but the other four have fold 1 for H1 and fold 3 for
H2 as occurs in 3-23 and the majority of the human family VH3
germline segments. This might be suggesting that these are derived
from other, not yet known germline VH segments. Examination of the
key residues supporting the canonical folds gives the perfect match
with those occurring in human germline with the same canonical fold
combination as was already observed for the llama germline VH
segment listed in Table 1. It is very interesting to see that key
residue 94 in these somatically mutated sequences is Lysine (2 out
of 5), Serine (1 out of 5) and Arginine (1 out of 5), which are all
found in the human germlines with the same fold combination or are
proposed by Morea and colleagues (Morea et al., Methods 20:267-279
(2000)).
TABLE-US-00012 11.1 Somatically mutated Llama VH from conventional
antibodies (SEQ ID NOS: 104-110) IGHV FR1-IMGT CDR1-IMGT FR2-IMGT
CDR2-IMGT FR3-IMGT CDR3-IMGT gene (1-26) (27-38) (39-55) (56-65)
(66-104) (105-115) 1 10 20 30 40 50 60 70 80 90 100 110
.........|.........|...... ...|........ .|.........|.....
....|..... ....|.........|.........|.........|.... .....|..... (J1,
4, 5) M99660, EVQLLESGG.GLVQPGGSLRLSCAAS GFTFSSYA....
MSWVRQAPGKGLEWVSA ISGSGGST..
YYADSVK.GRFTISRDNSKNTLYLQMNSLRAEDTAVYYC AK......... WGQGTLVTVSS
IGHV3-23 IVH28 EVQLVESGG.GLVQPGGSLRLSCAAS GFAFSSYD....
MSWVRQAPGKGLEWVSA INSGGIST..
YNADSMK.GRFTISRDNAKNTVYLQMNSLKPEDTAVYYC NADTWYCDQLDSSDY WGQGTQVTVSS
IVH69 EVQLVESGG.GLVQPGRSLRVSYAAS GFTFSSHY.... MSWVRQDPEKGLEWVSE
IATGGTIT.. SYADSVK.GRFTISRDNANNMLFLQMNNLKPEDTALYYC VRRGRAIA....FDV
WGQGTLVTVSS IVH47 EVQLVESGG.GLVQPGGSLRLSCAAS GLTFDDYA....
MSWVRQAPGKGLEWVST IYTHSRNT..
YYADSVK.GRFTISRDNAKNTLYLQMNSLKSDDTALYYC AKEWVGSVVEGRYRG WGQGTLVTVSS
IVH48 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYV.... MSXVRQAPGKGPEWVSG
VNTDGRSI.. TYADSVK.GRFTISRDNAKNTLYLQMNSLKPEDTAVYYC TKICTVITGRPGYDY
WGQGTLVTVSS IVH70 EVQLVESGG.GLVQPGGSLRVSCAAS GFTFSSLY....
MSWVRQAPGKGLEWVST IHTASGST..
FYADSVQ.GRFLVSRDNAKNTLYLQMQSLKPEDTARYYC ASAILGW.....YDY WGQGTLVTVSS
IVH71 EVQLVESGG.GLVQPGGSLRLSCAAS GFTFSSYD.... MSWVRQAPGKGLEWVSG
IYSDGTTT.. YDGDSVK.GRFTISRDNAKNHLYLQMNSLKPEDAAVYYC ASAIRGW.....YDY
WGQGTLVTVSS A) Sequence homology: 1) position 5 Valine (primer
encoded) also found in f.i. IGHV3-15 2) position 83 Alanine is
found more often in human VH3 germlines then Serine of 3-23 3)
position 95/96 Lysine/Proline occurs in IGHV3-15/49/73 as
Lysine/Threonine 4) CDR1 is completely human-like, in CDR2 only
residues 57, 58 and 59 seem to deviate from human germline 3-23 (57
Serine, 58 Glycine, 59 Serine) 5) FR4 gives perfect match with
human J1, J4 and J5 B) Canonical fold analysis 1) combination fold
1 for H1 and fold 2 for H2 for IVH28 and 1VH69 (as in 3 out of 11
human germline family VH1 members and both human germline family
VH5 members) 2) for IVH47, 48, 70 and 71 combination fold 1 for H1
and fold 3 for H2 as found in 3-23 and majority of family VH3
members Examples of analysis: IVH28: CDR H1 Class ? ! Similar to
class 1/10A, but: ! H33 (Chothia Numbering) = D (allows: YAWGTLV) !
H94 (Chothia Numbering) = A (allows: RKGSHN) CDR H2 Class ? !
Similar to class 2/10A, but: ! H33 (Chothia Numbering) = D (allows:
YWGATL) ! H59 (Chothia Numbering) = N (allows: Y) ! H71 (Chothia
Numbering) = R (allows: VAL) IVH47: CDR H1 Class 1/10A [2fbj] CDR
H2 Class ? ! Similar to class 3/10B, but: ! H52 (Chothia Numbering)
= Y (allows: SFWH) ! H53 (Chothia Numbering) = H (allows: DGSN)
Example 12
Analysis Key Residues for Canonical Folds of L1(.lamda.) and
L2(.lamda.) and Comparison of L1(.lamda.) and L2(.lamda.) Residues
with Human Germline
[0295] Also the predicted canonical structures of L1 and L2 were
analyzed for the somatically mutated dromedary VLambda segments
based on length of the loops and the presence of the key residues
relevant for the canonical folds. The comparison was made with the
key residues occurring in the closest matching human germline with
the same combination of canonical folds and overall sequence
homology (Table 3). For the somatically mutated dromedary VL family
VL3-1 (Camvl8, 18, 19, 20 and 23), with fold 11 for L1 (L1: 11) and
fold 7 for L2 (L2: 7), and somatically mutated dromedary VL family
VL3-12/32 (Camvl11) with fold 11 for L1 (L1: 11) and fold 7 for L2
(L2: 7), and somatically mutated dromedary VL1-40 (Camvl44) with
fold 14 for L1 (L1: 14) and fold 7 for L2 (L2: 7), and somatically
mutated dromedary VL2-18 (Camvl5, 17, 30-33, 36, 52, 57, 59, 60 and
65) with fold 14 for L1 (L1: 14) and fold 7 for L2 (L2: 7) the key
residues 2, 25, 29, 30, 33 and 71 relevant for the canonical fold
of L1 are shown along with these from the analogue human germline
family with the same canonical fold combination (upper part of
Table 3). For somatically mutated dromedary VL family VL3-1
(Camvl8, 18, 19, 20 and 23), with fold 11 for L1 (L1: 11) and fold
7 for L2 (L2: 7), and somatically mutated dromedary VL family
VL3-12/32 (Camvl11) with fold 11 for L1 (L1: 11) and fold 7 for L2
(L2: 7), and somatically mutated dromedary VL1-40 (Camvl44) with
fold 14 for L1 (L1: 14) and fold 7 for L2 (L2: 7), and somatically
mutated dromedary VL2-18 (Camvl5, 17, 30-33, 36, 52, 57, 59, 60 and
65) with fold 14 for L1 (L1: 14) and fold 7 for L2 (L2: 7) the key
residues 48 and 64 important for the canonical fold of L2 are shown
along with the key residues from the analogue human germline
families having the same canonical fold combinations (lower part
Table 3).
[0296] As observed for VH the analysis reveals the "human nature"
of both canonical loops L1 and L2, because here also the key
residues of the camelid VLambda segments are identical to those of
the corresponding human VLambda segments. For example, in dromedary
VL3-12/32, VL1-40 and VL2-18 all key residues of L1 are identical
to those occurring in the corresponding human germlines, and in
dromedary VL3-1, VL3-12/32 and VL2-18 the key residues of L2
completely match with the corresponding human germline VL segments.
Basically there are only two exceptions. First of all, L2 key
residue 64 of VL1-40 is Glutamate, which is rather different from
Glycine that is present in human germline V.lamda.1 with the same
L1/L2 combination of canonical folds as VL1-40. It is difficult to
draw general conclusions, since VL1-40 only consists of an orphan
(i.e. Camvl44). The second exception is VL3-1, where Phenylalanine
is the most dominantly occurring L1 key residue on position 30,
whereas Leucine is frequently found in human V.lamda. family 3
members that share fold 11 for L1 and fold 7 for L2 with VL3-1.
However, Leucine is also present in one out of the five VL3-1
members.
[0297] We analyzed the individual amino acid residues of the L1 and
L2 loops of the somatically mutated dromedary VLambda segments
along with the key residues and made the comparison with the human
counterparts sharing the same canonical fold combination (Table 4).
For the somatically mutated dromedary VL family VL3-1 (Camvl8, 18,
19, 20 and 23), with fold 11 for L1 (L1: 11) and fold 7 for L2 (L2:
7), and somatically mutated dromedary VL family VL3-12/32 (Camvl11)
with fold 11 for L1 (L1: 11) and fold 7 for L2 (L2: 7), the L1
residues 27 to 33 together with key residue 71 outside L1 are
compared with the same residues present in the corresponding human
germline V.lamda. with same combination of folds for L1 and L2
(upper part of Table 4A). For dromedary somatically mutated
dromedary VL1-40 (Camvl44) with fold 14 for L1 (L1: 14) and fold 7
for L2 (L2: 7), and somatically mutated dromedary VL2-18 (Camvl5,
17, 30-33, 36, 52, 57, 59, 60 and 65) with fold 14 for L1 (L1: 14)
and fold 7 for L2 (L2: 7) the L1 residues 26 to 33 together with
key residues 2 and 71 outside L1 are compared with the same
residues present in the corresponding human germline V.lamda.
family with same combination of folds for L1 and L2 (lower part of
Table A). In addition, for somatically mutated dromedary VL family
VL3-1 (Camvl8, 18, 19, 20 and 23), with fold 11 for L1 (L1: 11) and
fold 7 for L2 (L2: 7), and somatically mutated dromedary VL family
VL3-12/32 (Camvl11) with fold 11 for L1 (L1: 11) and fold 7 for L2
(L2: 7), and somatically mutated dromedary VL1-40 (Camvl44) with
fold 14 for L1 (L1: 14) and fold 7 for L2 (L2: 7), and somatically
mutated dromedary VL2-18 (Camvl5, 17, 30-33, 36, 52, 57, 59, 60 and
65) with fold 14 for L1 (L1: 14) and fold 7 for L2 (L2: 7) the L2
residues 49 to 53 together with key residues 48 and 64 located
outside L2 are compared with the same residues present in the
corresponding human germline V.lamda. family with the same
combination of canonical folds for L1 and L2 (Table 4B). There is a
high degree of sequence homology between the L1, L2 and key
residues with the human germline sequences and only few exceptions
exist, which mainly can be found in the orphan members of the
VL3-12/32 and VL1-40 families. For L1 of VL3-12/32 residues 27, 28,
30, 30a and 30.quadrature.b .quadrature.deviate from the
corresponding human germline V.lamda. family 3, while for the same
loop residues 30b, 31 and 32 of VL1-40 are different from the
matching human germline V.lamda. family 1. In the orphan member of
VL3-12/32 L2 residue 50 differs from the human analogue, while for
the only member of VL1-40 key residue 64 differs from the human
analogue. A fundamental difference can be observed for L1 residue
28 of dromedary family VL2-18 (Asparagine or Glutamate versus
Serine in analogue human V.lamda. family 2).
Example 13
Analysis Key Residues for Canonical Folds of L1(.kappa.) and
L2(.kappa.)) and Comparison of L1(.kappa.)) and L2(.kappa.))
Residues with Human Germline
[0298] The predicted canonical structures of L1(.kappa.)) and
L2(.kappa.)) were analyzed for the somatically mutated dromedary
VKappa segments based on loop length and presence of key residues.
As before the comparison was made with the key residues occurring
in the closest matching human germline with the same combination of
canonical folds and overall sequence homology (Table 5). For the
somatically mutated dromedary VK family VK2-40 (Kp1, 3, 6, 7, 10,
20 and 48), with fold 3 for L1 (L1: 3) and fold 1 for L2 (L2: 1)
the key residues 2, 25, 29, 30e, 33 and 71 relevant for the
canonical fold of L1 are shown along with these from the analogue
human VKappa germline family 2 with the same canonical fold
combination. In addition the key residues compatible with the
corresponding canonical fold as proposed by Morea et al. are shown
in the bottom line. There is a perfect match for key residues 2,
25, 33 and 71 and to a certain degree for residue 29. Residue 30e
of the dromedary VKappa is Glutamine in stead of Glycine, but Morea
and colleagues (Morea et al., Methods 20:267-279 (2000)) suggested
this residue to be perfectly compatible with the fold 3 for L1.
[0299] For the same somatically mutated dromedary VK family VK2-40
(Kp1, 3, 6, 7, 10, 20 and 48) with fold 3 for L1 (L1: 3) and fold 1
for L2 (L2: 1) the key residues 48 and 64 determining the canonical
fold of L1 are shown together with these from the analogue human
VKappa germline family 2. Here again the match is perfect.
[0300] The individual amino acid residues of the L1 and L2 loops of
the somatically mutated dromedary VKappa segments along with the
key residues were compared with those occurring in the human
counterpart (VK family 2) that shares the same canonical fold
combination (Table 6). For the somatically mutated dromedary VK
family VK2-40 (Kp1, 3, 6, 7, 10, 20 and 48) with fold 3 for L1 (L1:
3) and fold 1 for L2 (L2: 1) the L1 and L2 residues were compared
with those found in germline VK family 2 that has the identical
canonical loop combination. The majority of the residues are shared
between the dromedary somatically mutated VK and the human
germline, such as Isoleucine on position 2, Serine on 25, 26 28 and
30b, Glutamine on 27, Tyrosine on 32, Leucine on 33 and
Phenylalanine on 71. However, a few differ from the human analogue,
i.e. Valine on 29 (although Leucine of human germline also occurs
in the dromedary VK), Phenylalanine on 30 (again human residue
Leucine is found as well in dromedary VK), Serine on 30a (human
residue Glutamate occurs infrequently in dromedary VK), Serine on
30c, Asparagine on 30d, Glutamine on 30e, Lysine on 30f and finally
Serine on 31.
[0301] Together with the key residues the residues of the L2 loop
of the somatically mutated dromedary VKappa segments were compared
those occurring in the human counterpart (VK family 2) that shares
the same canonical fold combination (Table 6). Here again a perfect
match was observed from residue Isoleucine on 48, Tyrosine on 49,
Serine on 52 and Glycine on 64, while deviations were found on
position 50 (Tyrosine in stead of Threonine from human VK family
2), and 51 (Alanine on 51 instead of Leucine).
Overall Conclusion
[0302] This analysis of the camelid VH and VL sequences
demonstrates a very high homology if not identity to the human key
residues defining the canonical folds as well as to the residues
found in the hypervariable loops themselves. This suggests that the
vast majority of the camelid immunoglobulin sequences will adopt
the canonical folds as found in the human germlines, not only for
the individual hypervariable loops but as well as for the
combination of canonical folds found in human VH and VL.
TABLE-US-00013 TABLE 1 Sites of key residues for determining
canonical folds in germline dromedary and llama VH. Number between
brackets indicates frequency of residue as found in dromedary/llama
or human germline; numbering of key residues according to Kabat et
al. (Sequences of Proteins of Immunological Interest, 5.sup.th ed.
(1991)) and key residues proposed by Morea and colleagues. (Morea
et al., Methods 2000). Canonical Closest hu H1 key residues
Sequence structure GL family 24 26 27 29 Gl Drom IGHV1S(1-19) H1: 1
(3-53) A(19) G(19) F(19) F(19) Hu Gl family 3 A(23); G(1) G(24)
F(24) F(22); V(2) Gl Drom IGHV1S H1: 1 (3-23) A(4) G(4) F(4) F(4)
(20, 22, 23, 24) Hu 01 family 3 A(23); G(1) G(24) F(24) F(22); V(2)
Gl Drom IGHV1S H1: 1 (V.sub.I-4, 1b) A(16) G(15); A(1) F(16) F(14);
S(1); (21, 25-39) Y(1) Hu Gl family 1 A(19); V(2) G(21) Y(18);
F(1); G(2) F(20); L(1) Gl Llama IGHV1S6 H1: 1 (3-23) A(1) G(1) F(1)
F(1) Hu Gl family 1 A(19); V(2) G(21) Y(18); F(1); G(2) F(20); L(1)
H1: 1 (Morea) A; V; S; T G F; Y; S; D F; L; I Gl Drom IGHV1S(1-19)
H2: 1 (3-53) Hu Gl family 3 H2: 1 (Morea) Gl Drom IGHV1S H2: 3
(3-23) (20, 22, 23, 24) Hu Gl family 3 H2: 3 (Morea) Gl Drom IGHV1S
H2: 2 (V.sub.I-4, 1b) (21, 25-39) Hu Gl family 1 H2: 2 (Morea) Gl
Llama IGHV1S6 H2: 2 (3-23) Hu Gl family 1 H2: 2 (Mores) H1 key
residues H2 key residues Sequence 34 94 52a 54 55 71 Gl Drom
IGHV1S(1-19) M(19) G(1);-(18) Hu Gl family 3 M(23); T(1) R(18);
K(5); T(1) Gl Drom IGHV1S M(4) -- (20, 22, 23, 24) Hu 01 family 3
M(23); T(1) R(18); K(5); T(1) Gl Drom IGHV1S M(13); I(2); V(1) --
(21, 25-39) Hu Gl family 1 M(13); I(5); L(2); V(1) R(17); T(2);
A(1) Gl Llama IGHV1S6 M(1) A(1) Hu Gl family 1 M(13); I(5); L(2);
V(1) F(17); T(2); A(1) M; V; I; Y; W R; G; N; K; S Gl Drom
IGHV1S(1-19) -- -- G(19) R(18); Q(1) Hu Gl family 3 -- -- G(4) R(4)
G; D K; R; V; I Gl Drom IGHV1S -- G(4) -- R(4) (20, 22, 23, 24) Hu
Gl family 3 -- G(13); S(3) -- R(14) -- G; S; N; D -- R; K Gl Drom
IGHV1S S(10); T(6) -- G(16) R(8); K(4); Q(4) (21, 25-39) Hu Gl
family 1 P(3); T(2); A(2) -- G(7) A(3); T(2); L(2) P; T; A G; N; D;
S A; L; T Gl Llama IGHV1S6 S(1) -- S(1) T(1) Hu Gl family 1 P(3);
T(2); A(2) -- G(7) A(3); T(2); L(2) PTA G; N; D; S A; L; T Ha: b
indicates canonical fold type b for loop Ha.
TABLE-US-00014 TABLE 2(A) Comparison of H1 sequences for dromedary
and llama germline VH with human germlines; numbering according to
Kabat et al. (Sequences of Proteins of Immunological Interest,
5.sup.th ed. (1991)). 24 * 26 * 27 * 28 29 * 30 31 Gl Drom IGHV1S
A(19) G(19) F(19) T(19) F(19) S(19) S(19) (1-19) Family 3 Hu GL
A(3); G(1) G(4) F(4) T(4) V(2); F(2) S(4) S(4) Gl Drom IGHV1S A(4)
G(4) F(4) T(4) F(4) S(4) S(4) (20, 22, 23, 24) Family 3 Hu GL A(16)
G(16) F(16) T(16) F(16) S(13); D(3) S(11); D(4); N(1) Gl Drom
IGHV1S A(16) G(15); A(1) F(16) T(16) F(14); S(1); S(16) S(16) (21,
25-39) Y(1) Family 1 Hu GL A(6); V(1) G(7) Y(5); G(2) T(7) F(7)
T(5); S(2) S(6); D(1) Gl Llama IGHV1S6 A(1) G(1) F(1) T(1) F(1)
S(1) S(1) Family 1 Hu GL A(6); V(1) G(7) Y(5); G(2) T(7) F(7) T(5);
S(2) S(6); D(1) H1: 1 residue no. Gl Drom IGHV1S 31a 31b 32 33 34 *
35 94 * (1-19) -- -- Y(19) Y(14); D(2); M(19) S(17); Y(2) G(1)
Family 3 Hu GL W(2); A(1) Gl Drom IGHV1S -- -- N(2); Y(2) Y(2);
A(1); D(1) M(4) S(2); H(2) R (20, 22, 23, 24) -- -- Y(4) W(3); Y(1)
M(4) Y(3); S(1) -- Family 3 Hu GL -- -- Y(15); H(1) A(6); G(3);
Y(2); W(2); M(15); T(1) H(9); S(5); N(2) R(11); K(5) Gl Drom IGHV1S
S(1); E(1); T(1) (21, 25-39) -- -- Y(15); C(1) W(7); A(4); D(3);
M(13); I(2); Y(8); S(8) -- Family 1 Hu GL Y(1); C(1) V(1) Gl Llama
IGHV1S6 -- -- Y(7) A(4); G(2); Y(1) I(4); M(3) S(4); N(2); H(1)
R(4); T(1); -(1) Family 1 Hu GL -- -- S(1) A(1) M(1) S(1) A(1) --
-- Y(7) A(4); G(2); Y(1) I(4); M(3) S(4); N(2); H(1) R(4); T(1);
-(1) Asterisks indicate key residues important for canonical
folds.
TABLE-US-00015 TABLE 2(B) Comparison of H2 sequences for dromedary
and llama germline VH with human germlines; numbering according to
Kabat et al. (Sequences of Proteins of Immunological Interest,
5.sup.th ed. (1991)). 50 51 52 52a 52b 52c 53 Gl Drom G(17); A(2)
I(18); N(1) Y(16); N(2); -- -- -- S(19) IGHV1S(1-19) T(1) Family 3
Hu GL V(2); A(2) I(4) Y(2); G(2) -- -- -- S(2); T(2) Gl Drom IGHV1S
T(3); G(1) I(4) N(4) S(4) -- -- G(3); D(1) (20, 22, 23, 24) Family
3 Hu GL V(5); Y(4); G(2); A(2); I(15); S(1) S(12); N(2); Y(5);
S(5); -- -- D(8); S(4); R(1); N(1); L(1) W(1); K(1) W(3); G(2);
Q(1) N(4) Gl Drom IGHV1S A(9); S(4); T(2); G(1) I(16) N(10); Y(6)
S(10); T(6) -- -- G(14); A(2) (21, 25-39) Family 1 Hu GL W(4);
R(1); G(1); L(1) I(6); V(1) S(2); N(2); P(3); T(2); A(2) -- --
Y(2); N(2); I(2); D(1) I(2); E(1) Gl Llama S(1) I(1) Y(1) S(1) --
-- Y(1) IGHV1S6 Family 1 Hu GL W(4); R(1); G(1); L(1) I(6); V(1)
S(2); N(2); P(3); T(2); A(2) -- -- Y(2); N(2); I(2); D(1) I(2);
E(1) 54 55* 56 57 58 71* H2: 1 residue no. Gl Drom D(18); R(1)
G(19) S(18); G(1) T(19) Y(17); N(1); R(18); Q(1) IGHV1S(1-19) H(1)
Family 3 Hu GL G(3); A(1) G(4) S(2); G(1); D(1) T(4) Y(4) R(4) H2:
3 residue no. Gl Drom IGHV1S G(4) G(3); S(1) S(3); N(1) T(4) Y(4)
R(4) (20, 22, 23, 24) Family 3 Hu GL G(13); S(3) S(10); G(6) S(6);
N(5); T(3); T(6); K(6); Y(12); G(2); R(16) Y(1); E(1) I(4) T(1);
N(1) H2: 3 residue no. Gl Drom IGHV1S G(16) G(16) S(16) T(16) Y(16)
R(8); K(4); (21, 25-39) Q(4) Family 1 Hu GL N(2); T(2); L(1); G(7)
N(4); T(1); T(3); P(2); N(4); T(2); I(1) A(3); L(2); F(1); D(1)
I(1); E(1) A(2 T(2) H2: 2 residue no. Gl Llama IGHV1S6 S(1) S(1)
N(1) T(1) Y(1) T(1) Family 1 Hu GL N(2); T(2); L(1); G(7) N(4);
T(1); T(3); P(2); N(4); T(2); I(1) A(3); L(2); F(1); D(1) I(1);
E(1) A(2 T(2) Asterisks indicate key residues important for
canonical folds.
TABLE-US-00016 TABLE 3 Sites of key residues for determining
canonical folds in somatically mutated dromedary VLambda sequences;
numbering according to Kabat et al. (Sequences of Proteins of
Immunological Interest, 5.sup.th ed. (1991)) and key residues
proposed by Morea and colleagues (Morea et al., Methods 2000).
Canonical Closest hu L1(.lamda.) key residues L2(.lamda.) key
residues Sequence structure GL family 2 25 29 30 33 71 48 64 Som
Mut Drom VL3-1 Li: 11 (or 2) (IGLV3- -- G(5) -- F(4); L(1) T(2);
A(1); T(4); A(1) (Camvl8, 18, 19, 20, 23) 1*01) V(1); F(1) Hu Gl
V.lamda. family 3 -- G(10) -- L(6); I(3); M(1) A(6); V(3); A(5);
T(3); E(1) V(2) L1: 2 (Morea) -- G -- I V A Som Mut Drom VL3-12/32
L1: 11 (or 2) (IGLV3- -- G(1) -- L(1) A(1) T(1) (Camvl11) 1*01) Hu
Gl V.lamda. family 3 -- G(10) -- L(6); I(3); M(1) A(6); V(3); A(5);
T(3); E(1) V(2) L1: 2 (Morea) -- G -- I V A Som Mut Drom VL1-40 L1:
14 (or 6) (IGLV1- S(1) G(1) N(1) -- V(1) A(1) (Camvl44) 40*01) Hu
Gl V.lamda. family 1 S(2) G(2) N(2) -- V(2) A(2) L1: .lamda.6
(Martin) S G N -- V A Som Mut Drom VL2-18 L1: 14 (or 6) (IGLV2-
S(11); G(12) D(12) -- V(12) A(11); V(1) (Camvl5, 17, 30-33, 36,
18*02) A(1) 52, 57, 59, 60, 65) Hu Gl V.lamda. family 2 S(6) G(6)
D(6) -- V(6) A(6) L1: .lamda.6 (Martin) S G N -- V A Som Mut Drum
VL3-1 L2: 7 (IGLV3- I(4);L(1) G(3); A(2) (Camvl8, 18, 19, 20, 23)
1*01) Hu Gl V.lamda. family 3 I(10) G(10) L2: 1 (Morea) I; V G Som
Mut from VL3-12/ L2: 7 (IGLV3- I(1) G(1) 32 (Camvl11) 1*01) Hu Gl
V.lamda. family 3 I(10) G(10) L2: 1 (Morea) I; V G Som Mut Drom
VL1-40 L2: 7 (IGLV1- I(1) E(1) (Camvl44) 40*01) Hu Gl V.lamda.
family 1 I(2) G(1) L2: 1 (Morea) I; V G Som Mut Drom VL2-18 L2: 7
(IGLV2- I(12) G(11);S(1) (Camvl5, 17, 30-33, 36, 18*02) 52, 57, 59,
60, 65) Hu Gl V.lamda. family 2 I(6) G(6) L2: 6 (Morea) I; V G
TABLE-US-00017 TABLE 4(A) Comparison of L1 sequences of dromedary
VLambda with human germlines; numbering according to Kabat et al.
(Sequences of Proteins of Immunological Interest, 5.sup.th ed.
(1991)). 02 26 27 28 29 30* 30a 30b 30c 31 32 33 * 71 * L1: 11
residue no. Som Mut Drom -- -- G(4); N(3); D(1); -- F(4); G(5)
S(4); D(1) Y(4); K(1) -- Y(4); T(2); A(5) VL3-1 (Camvl8, D(1) I(1)
L(1) K(1) A(1); 18, 19, 20, 23) V(1); F(1) Family Hu Gl V.lamda.
family 3 -- -- D(6); N(3); A(3); -- L(6); G(5); P(3); S(4); K(3);
K(6); Y(1); -- Y(7); A(6); A(3); 3 N(3); S(2); K(1); I(3); R(1);
E(1) D(1); E(1); N(1); Q(1); A(1); V(3); T(3); E(1) V(1) M(1) G(1)
S(1) S(1); E(1) V(2) N(1) L1: 11 residue no. Som Mut Drom -- --
S(1) L(1) -- R(1) N(1) Y(1) Y(19); -- A(1) A(1) A(1) VL3-12/32 C(1)
(Camvl11) Family Hu Gl V.lamda. family 3 -- -- D(6); N(3); A(3); --
L(6); G(5); P(3); S(4); K(3); K(6); Y(1); -- Y(7); A(6); A(3); 3
N(3); S(2); K(1); I(3); R(1); E(1) D(1); E(1); N(1); Q(1); A(1);
V(3); T(3); E(1) V(1) M(1) G(1) S(1) S(1); E(1) V(2) N(1) L1: 14
residue no. Som Mut Drom S(1) S(1) S(1) S(1) N(1) I(1) G(1) G(1)
G(1) S(1) G(1) V(1) A(1) VL1-40 (Camvl44) Family Hu Gl V.lamda.
family 1 S(2) S(2) S(2) S(2) N(2) I(2) G(2) A(2) G(2) Y(2) D(1);
V(2) A(2) 1 V(1) L1: 14 residue no. Som Mut Drom S(11); T(12)
S(10); N(9); D(3) D(11); V(12) G(12) G(5); Y(12) N(11); Y(12) V(12)
A(11); VL2-18 (Camvl5, A(1) R(2) G(1) R(4); A(1) V(1) 17, 30-33,
36, 52, K(2); 57, 59, 60, 65) A(1) Family Hu Gl V.lamda. family 2
S(6) T(6) S(6) S(6) D(6) V(6) G(6) G(3); S(2); Y(6) N(5); Y(3);
V(6) A(6) 2 D(1) D(1) R(1); L(1); V(1) Asterisks indicate key
residues important for canonical folds.
TABLE-US-00018 TABLE 4(B) Comparison of L2 sequences of dromedary
VLambda with human germlines; numbering according to Kabat et al.
(Sequences of Proteins of Immunological Interest, 5.sup.th ed.
(1991)). L2: 7 residue no. 48 * 49 50 51 52 53 64 * Som Mut Drom
VL3-1 I(4); L(1) Y(5) K(3); R(1); G(1) D(4); N(1) S(2); T(2); A(1);
L(1); E(1); G(3); (Camvl8, 18, 19, 20, 23) D(1) N(1); S(1) A(2)
Family 3 Hu Gl v.lamda. family 3 I(10) Y(10) E(2); K(2); D(1);
Q(1); D(8); K(1); S(9); N(1) E(3); N(3); G(10) R(1); S(1); G(1);
Y(1) S(1) K(2); D(2) Som Mut Drom VL3- I(1) Y(1) N(1) D(1) N(1)
N(1) G(1) 12/32 (Camvl11) Family 3 Hu Gl V.lamda. family 3 I(10)
Y(10) E(2); K(2); D(1); Q(1); D(8); K(1); S(9); N(1) E(3); N(3);
G(10) R(1); S(1); G(1); Y(1) S(1) K(2); D(2) Som Mut Drum VL1-40
I(1) Y(1) G(1) N(1) S(1) N(1) E(1) (Camvl44) Family 1 Hu Gl
V.lamda. family 1 I(2) Y(2) G(2) N(2) S(2) N(2) G(2) Som Mut Drom
VL2-18 I(12) Y(12) Q(11); D(1) V(9); I(2); N(10); S(1); K(12)
G(11); (Camvl5, 17, 30-33, 36, D(1) D(1) S(1) 52, 57, 59, 60, 65)
Family 2 Hu Gl V.lamda. family 2 I(6) Y(6) E(4); D(1); N(1) V(6)
S(5); N(1) K(3); N(2); T(1) G(6) Asterisks indicate key residues
important for canonical folds.
TABLE-US-00019 TABLE 5 Sites of key residues for determining
canonical folds in somatically mutated dromedary VKappa sequences;
numbering according to Kabat et al. Sequences of Proteins of
Immunological Interest, 5.sup.th ed. (1991)) and key residues
proposed by Morea and colleagues (Morea et al., Methods 2000).
Canonical L1(.kappa.) key residues L2(.kappa.) key residues
Sequence structure Closest hu GL family 2 25 29 30e 33 71 48 64 Som
Mut Drom VK2-40 K1: 3 GKV2-40 (2_1 or 011*/01) I(7) S(7) V(6); L(1)
Q(7) L(7) F(7) (Kp1, 3, 6, 7, 10, 20, 48) Hu Gl VK family 2 I(1)
S(1) L(1) G(1) L(1) F(1) K1: 3 (Morea) I S L; V E; Q; S L F Som Mut
Dram VK2-40 K2: 1 GKV2-40 (2_1 or 011*/01) I(7) G(7) (Kp1, 3, 6, 7,
10, 20, 48) Hu Gl VK family 2 I(1) G(1) H2: 1 (Morea) I, V G
TABLE-US-00020 TABLE 6 Comparison of (A) L1 and (B) L2 sequences of
dromedary VKappa with human germline; numbering according to Kabat
et al. (Sequences of Proteins of Immunological Interest, 5.sup.th
ed. (1991)). (A) L1(.kappa.): 11 residue no. 2 * 25 * 26 27 28 29 *
30 30a 30b 30c 30d 30e * 30f 31 32 33 * 71 * Som Mut Drom I(7) S(7)
S(7) Q(7) S(5); V(6); F(3); S(5); S(4); S(7) N(4); Q(7) K(6); S(7)
Y(3); L(7) F(7) VK2-40 (Kp1, 3, N(1); L(1) L(2); D(1); D(1); S(2);
R(1) L(2); 6, 7, 10, 20, 48) H(1) I(1); A(1) T(1); R(1) Q(1); V(1)
V(1) F(1) Family Hu Gl VK family I(1) S(1) S(1) Q(1) S(1) L(1) L(1)
D(1) S(1) D(1) D(1) G(1) N(1) T(1) Y(1) L(1) F(1) 2 2 (011*/01) (B)
L2 (.kappa.): 11 residue no. 48 * 49 50 51 52 64 * Som Mut Drom
I(7) Y(7) Y(7) A(7) S(7) G(7) VK2-40 (Kp1, 3, 6, 7, 10, 20, 48)
Family Hu Gl VK family I(1) Y(1) T(1) L(1) S(1) G(1) 2 2 (011*/01)
Asterisks indicate key residues important for canonical folds.
Example 14
Sequence Analysis of Somatically Mutated VH, VK and VL from
Llama
[0303] From four llamas peripheral blood lymphocytes were isolated,
RNA extracted and random primed cDNA synthesized as described
before (de Haard et al, JBC 1999). Amplification of VHCH1, VLCL and
VKCK was performed and the amplicons were cloned in vector pCB3
yielding heavy chain or light chain libraries. After screening of
clones with PCR to check for the presence of the antibody domain
insert, individual clones were grown and plasmid DNA was purified
for sequence analysis.
[0304] Section 14.A shows the lambda light chain variable regions
grouped into families according to the closest human germline
analogue with the same CDR1 and CDR2 length and presumable having
the same canonical fold combination. The lambda germlines most
frequently used in humans, i.e. VL1, VL2 and VL3, are also often
found in the analyzed llama sequences and in addition VL4, VL5, VL6
(not shown in section 14.A) and VL8, meaning that 7 out of the 10
lambda families as found in humans are used as well in the llama.
Section 14.B shows two of the three kappa light chain variable
regions (i.e. VK1, and VK4; VK2 is not shown), which occur in about
50% of kappa containing human antibodies. Members of the VK3
family, which is used most frequently (50%) in human antibodies,
were not identified, but it can well be that the used primers for
amplification are responsible for this and that these have to be
adapted. Section 14.0 shows the alignment of the VH sequences
revealing a high sequence homology to the most often used human VH3
segment (occurs 34% in human antibodies) and VH1 (17%). It must be
noted that the recent publication of Achour et al (J Immunol 2008)
mentions the presence of a VH2 family in the germline of Alpaca
which is most closely related to the human VH 4 family (see example
10.10).
[0305] Overall it can be concluded that camelids use a high
diversity of heavy chain and light chain families similar to what
is found in the human immune system, meaning that by active
immunization with human disease targets an excellent choice of lead
antibodies can be expected with a high sequence homology to human
antibodies, which therefore can be easily engineered for
therapeutic applications.
TABLE-US-00021 14. (A) VLAMBDA (SEQ ID NOS: 111-138) FR1 CDR1 FR2
CDR2 FR3 CDR3 FR4 2 3 4 5 6 7 8 9 1234567891234567890123
45678901abc234 567890123456789 01abcde23456
789012345678ab90123456789012345678 9012345abcde HuVL1-1(3/4/5)
QSVLTQPPSVSEAPRQRVTISC SGSSSNIGNN AVN WYQQLPGKAPKLLIY YD DLLPS
GVSDRFSGSKSG TSASLAISGLQSEDEADYYC AAWDDSLNG LAMBDA#14
QPVLTQPPSVSGSPGQKFTISC TGSSSNIGNN YVN WYQHLPGTAPRLLIY SN NNRAS
GVPDRFSGSKSG SSASLTITGLQAEDEAEYYC SSWDDSLSGTV FGGGTHLTVL LAMBDA#16
QSALTQPPSVSGSPGQKFTISC TGSSSNIGDN YVN WYQHLPGTAPKLLIY SN SNRAS
GVPDRFSGSKSG SSASLTITGLQAEDEADYYC SSWDDSLSGHPV FGGGTKLTVL LAMBDA#46
NFMLTQPPSVSGSPGQKFTISC TGSSSDIGNN YVN WYQHLPGTAPKLLIY ST DKRAS
GVPDRFSGSKSG SSASLTITGLQAEDEADYYC SSWDDNLGTYV FGGGTSVTVL LAMBDA#45
NFMLTQPPSVSGSPGQKFTISC TGSSSNIGEN FVN WYQHLPGTAPKLLIY ST DKRAS
GVPDRFSGSKSG SSASLTITGLQAEDEADYYC SSWDDNLGTYV FGGGTSVTVL LAMBDA#15
NFMLTQPPSVSGSPGQKFTISC TGSNNNIGNN YVN WYQHLPGTAPKLLIY SN NYRAS
GVPDRFSGSKSG SSASLTITGLQAEDEADYYC SSWDESLSGRYV FGGGTKLAVL HuVL1-2
QSVLTQPPSVSGAPGQRVTISC TGSSSNIGAGYDVH WYQQLPGTAPKLLIY GN SNRPS
GVPDRFSGSKSG TSASLAITGLQAEDEADYYC QSYDSSLSG LAMBDA#47
QSALTQPPSVSGTLGKTVTISC AGTSNDIGRYNYVA WYQQLPGTAPKLLIY AV SYRAS
GIPDRFSGSKSG NTASLTISGLQSGDEADYYC VSYRSGGTNV FGGGTHLTVL LAMBDA#18
QSALTQPPSVSGTLGKTLTISC AGTSSDVGYGNYVS WYQQLPGTAPKLLIY RV SYRPS
GIPDRFSGSKSG NTASLTISGLQSEDEADYYC TSYTYKGGGTAV FGGGTHLTVL LAMBDA#32
QSALTQPPSVSGTLGKTVTISC AGTRTDVGYGDYVS WYQHVPNTAPRLLIY AV SARAS
GIPSRFSGSKSG NTASLTISGLQSEDEADYYC ASYRDGNYAV FGGGTHLTVL LAMBDA#28
QAVLTQPPSVSGTLGKAVTISC AGTGSDVGYGDYVS WYQQLPDTAPKLLVY AV NTRAS
GIPDRFSGSRSG NTASLTISGLQSEDEGDYYC ASYRSYNNYV FGGGTHLTVL LAMBDA#29
NFMLTQPPSVSGSPGKTVTISC AGTSSDVGYGNYVS WYQQLPGMAPKLLLY NI NKRAS
GIADRFSGSKSG NTASLTISGLQSEDEAVYYC ASYRSGNNYV FGGGTELTVL LAMBDA#27
QSALTQPPSVSGTLGKTVTISC AGTNSDIGDYNFVS WYQHLPGMAPKLLIY DV NKRAS
GIADRFSGSKSG NTASLTISGLQSEDEADYYC ASYRSSNNYV FGGGTKLTVL LAMBDA#17
QAGLTQPPSVSGSLGKTITISC AGTRNDIGGHGYVS WYQQLPGTAPKLLIY KI NTRAS
GIPDRFSGSKSG NTASLTISGLQSEDEADYFC VADINGDTNV FGGGTHLTVL LAMBDA#4
SSELTQPPSVSGTLGKTVTISC AGTSNDIGAHNYVS WYQQLPGTAPKLLIN KV STRAS
GIPDRFSGSKSG NTASLTISGLQSEDEADYYC AAYRTGDARI FGGGTHLTVL LAMBDA#7
QPVLTQPPSVSGSPGKTVTISC AGTSSDIGYGNYVS WYQLLPGTAPKLLIY DV NKRPS
GIPDRFSGSKSG NQAYLTISGLQSEDEADYYC VSYREPNNFV SGGGTHLVVL LAMBDA#8
QSALTQPPSVSGSLGKTVTISC AGTIGDIGAGNYVS WYRQTPGTAPKLLLY EV NKRTS
GIPDRFAGSRSG NTASLIISGLQAEDEADYYC ASYRIGSRGV FGGGTHLTVL LAMBDA#5
QPVLTQPPSVSGSLGKTVTISC AGTWSDIGGYNYIS WYRQLPGTAPRLLIY EV DKRAP
GIPDRFSGSKSG TTASLVISGLQSEDEADYYC ASYKSSENAV FGGGTHLTVV FR1 CDR1
FR2 CDR2 FR3 CDR3 FR4 2 3 4 5 6 7 8 9 1234567891234567890123
45678901abc234 567890123456789 01abcde23456
789012345678ab90123456789012345678 9012345abcde HuVL2-1
QSALTQPPSASGSPGQSVTISC TGTSSDVGSYNYVS WYQQHPGKAPKLMIY EV SKRPS
GVPDRFSGSKSG NTASLTVSGLQAEDEADYYC SSYAGSNNF LAMBDA#1
QSVLTQPPSVSGTLGKTLTISC AGTSSDVGYGNYVS WYQQLPGTAPKLLIY RV STRAS
GIPDRFSGSKSG NTASLTISGLQSEDEADYYC SSYRSTGTAV FGGGTHLSVL LAMBDA#8
QSVLTQPPSVSGTLGKTVTISC AGTSSDVGYGNYVS WYQKLPGTAPKLLIY AV SYRAS
GIPDRFSGSKSG NTASLTISGLQSEDEADYYC ASYRDSNNAV FGGGTHLTAL LAMBDA#5
LPVLTQPPSVSGTLGKSLTISC AGTSSDVGNGNYVS WYQQLPGTAPKLLIY RV TSRAS
GVPDRFSGSKSG NTASLTISGLQPEDEADYYC ASYKRGGTSV FGGGTHLTVL LAMBDA#11
QPVLTQPPSVSGTLGKTVTISC AGTSTDIGGYNYVS WYQQVPGTAPKLLIY EV NKRPS
GIPDRFSGSKSG NTASLTISGLQSEDEADYYC ASYRSSNNVV FGGGTHLTVL FR1 CDR1
FR2 CDR2 FR3 CDR3 FR4 2 3 4 5 6 7 8 9 1234567891234567890123
45678901abc234 567890123456789 01abcde23456
789012345678ab90123456789012345678 9012345abcde HuVL3-2
SYELTQPLSVSVALGQTARITC GGNNIGSK NVH WYQQKPGQAPVLVIY RD SNRPS
GIPERFSGSNSG NTATLTISRAQAGDEADYYC QVWDSSTA LAMBDA#13
LPVLTQPSALSVTLGQTAKITC QGGSLGSS YAH WYQQKPGPAPVLVIY DD ANRPS
GIPERFSGSRSG GTATLTISGAQAEDEGDYYC QSVDNSGNVV FGGGTHLTVL LAMBDA#40
QAVLTQPSAVSVSLGQTARLTC QGDNVETA GTS WYRQKPGQAPSLIIY GD SSRPS
EISERFSASTSG NTATLTITGAQAEDEADYYC LSADSDLDSV FGGGTLLTVL LAMBDA#2
QAGLTQPSAVSVSLGQTARITC RGDSLERY GAN WYQQKPGQARVQVIY GD DIRPS
GIPERFSGSRLG GTATLTISGAQAEDEADYYC QSSDSSGYMND FSSRTHLTVL LAMBDA#14
QSALTQPSAVSVSLGQTAEITC RGRNFESG FPH WYRQKPGQSPELVMF IV NNRWS
GIPDRFSGTRSG DAATLTITGVQAEDEADYYC QMWDGEGAV FGGGTHLTVL 14. (A)
VLAMBDA (SEQ ID NOS: 139-149) FR1 CDR1 FR2 CDR2 FR3 CDR3 FR4 2 3 4
5 6 7 8 9 1234567891234567890123 45678901abc234 567890123456789
01abcde23456 789012345678ab90123456789012345678 9012345abcde
HuVL4-1 LPVLTQPPSASALLGASIKLTC TLSSEHSTY TIE WYQQRPGRSPQYIMK VKSDGS
HSKGD GIPDRFMGSSSG ADRYLTFSNLQSDDEAEYHC GESHTIDGQVG LAMBDA#10
QSVLTQPPSASASLGASAKLTC TLSSGYSSY NVD WYQQVPGKSPWFLMR VGSSGV GSKGS
GVSDRFSGSSSG LERYLTIQNVQEEDEAEYIC GADHASSMYT FGGGTHLTVL FR1 CDR1
FR2 CDR2 FR3 CDR3 FR4 2 3 4 5 6 7 8 9 1234567891234567890123
45678901abc234 567890123456789 01abcde23456
789012345678ab90123456789012345678 9012345abcde HuVL5-1
QPVLTQPPSSSASPGESARLTC TLPSDINVGSYNIY WYQQKPGSPPRYLLY YYSDSD KGQGS
GVPSRFSGSKDASANTGILLISGLQSEDEADYYC MIWPSNAS LAMBDA#3
LPVLTQPPSLSASPGASARLTC SLNSGTIVGGYHIN WYQQKAGSPPRYLLR FYSDSN KHQGS
GVPSRFSGSKDASANAGLLLISGLQVEDEADYYC GIYDSNTGTYV FGGGTKLTVL LAMBDA#7
LPVLTQPPSLSASPGASARLTC VLSSGTVVGGYHIN WYQQKPGSPPRYLLR FYSDSS KQQGS
GVPSRFSGSKDASANAGLLLISGLQPEDEADYYC GTYHSNTGTYV FGGGTKLTVL LAMBDA#9
LPVLNQPPSLSASPGESARLTC SLSSETIVGGYQIA WYQQTAGSPPRYLLR FYSDSN KHQGS
GVPSRFSGSKDASANAGILFISGLQPEDEADYYC GIYHYNSDTYV FGGGTRLTVL LAMBDA#26
LPVLTQPPSLSASPGSSVRLTC TLSSGKSVGMYDIS WYQQKAGSPPRYLLY YYSDTS NHQGS
GVPSRFSGSKDASANAGLLLISGLQPEDEADYYC ATGDRSSNPHV FGGGTKLTVL LAMBDA#12
QSVLTQPPSLSASPGSSVRLTC TLSSANSVDNYYIS WYQQKPGSPPRYLLY YYSDSY MQRDS
GLPDRFSVSKDASTNAGLLLISGLQPEDEADYYC ASGDRNSNPHSV FGGGTHLTVL FR1 CDR1
FR2 CDR2 FR3 CDR3 FR4 2 3 4 5 6 7 8 9 1234567891234567890123
45678901abc234 567890123456789 01abcde23456
789012345678ab90123456789012345678 9012345abcde HuVL8-1
QTVVTQEPSLTVSPGGTVTLTC ASSTGAVTSGYYPN WFQQKPGQAPRALIY ST SNKHS
WTPARFSGSLLG GKAALTLSGVQPEDEAEYYC LLYYGGAQ LAMBDA#42
QAVVSQEPSLSVSPGGTVTLTC GLSSGSVTTSNYPG WFQQTPGQAPRTLIY ST SSRHS
GVPSRFSGSISG NKAALTITGAQPEDEADYYC ALDIGSYTV FGGGTKLTVL LAMBDA#31
QTVVTQEPSLSVSPGGTVTLTC GLTSGSVTASNLPG WFQQTPGQAPRTLIF DT IYHHS
GVPSRFSGSIAG NKATLTITGAQPEDEGDYFC VLWMDRIEAGSIM FGGGTHLSVV
TABLE-US-00022 14. (B) VKAPPA (SEQ ID NOS: 150-186) L1 L2 L3 FR1
CDR1 FR2 CDR2 FR3 CDR3 1 2 3 4 5 6 7 8 9 12345678901234567890123
45678901abcdef234 567890123456789 0123456
78901234567890123456789012345678 9012345 HuVK1-1
DIQMTQSPSSLSASVGDRVTITC RASQSI SSYLN WYQQKPGKAPKLLIY AASSLQS
GVPSRFSGSGSGTDFTLTISSLQPEDFATYYC QQSYSTP KAPPA#39
DIQLTQSPSSLSASLGDRVTITC QASQSI STELS WYQQKPGQTPKLLIY GASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDLATYYC LQDYSSPYS FGSGTRLEIK KAPPA#22
DIQLTQSPSSLSASLGDRVTITC QASQSI STELS WYQQKPGQTPKLLIY DRSRLQI
GVPSRFSGSGSGTTYTLTISDLEAEDLATYYC LQDDSWPYS FGSGTRLEIK KAPPA#24
DIVMTQTPSSLSASLGDRVTITC QASQSI NTELS WYQQKPEQPPKLLIY AASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDLATYYC LQDSDWPLT FGQGTKVELK KAPPA#21
DIVMTQSPSSLSASLGDRVTITC QATQSI NTELS WYQQKPGQSPKLLIY EASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDLATYYC MADLDWPLV FGQGTKVELK KAPPA#23
DIVMTQTPSSLSASLGDRVTITC QASQSI STELA WYQQKPGQTPKLLIY GASKLQT
GVPSRFSGSGSGTSFTLTISGLEAEDLATYYC LQGYSSPLT FGQGTEVDLK KAPPA#7
AIQMTQSPSSLSASLGDRVTITC QASQSI STELS WYQQKPGQTPKLLIY GASRLQT
GVPSRFSGSGSGTSFTLTISGLESEDLATYYC LQDYSWPLT FGQGTKVELT KAPPA#19
DIQLTQSPSSLSASLGDRVTITC QASQSI STELS WYQQKPGQTPKLLIY GASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDLATYYC LQDYSWPRT FGQGTKLEIK KAPPA#25b
DIVMTQTPPSLSASLGDRVTITC QASQSI RNELA WYQQKPGQTPKLLIY GASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDLATYYC LQDDSWPLT FGQGTKVELK I-_8
AIQMTQSPSSLSASLGDRVTITC QASQSI SSYLA WYQQKPGQAPKLLIY GASTLQT
GVPSRFSGSGSGTSFTLTISGLEAEDAGTYYC QQYYSIPVT FGQGTKVELR KAPPA#43
AIQMTQSPSSLSASLGDRVTITC QASQSI SSYLA WYQQKPGQAPKLLIY GASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDAGTYYC QLYGSRPS FGQGTKVELK KAPPA#44
VIQMTQSPSSLSASLGDRVTITC QASQSI SNYLA WYQQKPGQAPKLVIY GASRLQT
GVPSRFSGSGSGTSFTLTISGLEAEDAGTYYC QQYYSTYS FGSGTRLEIK KAPPA#20b
DIQLTQSPSSLSASLGDIVTITC QASQSI TTELS WYQQKPGQTPKLLIY GAFRLQA
GVPSRFSGSRSGTTFTLTISGLEAEDLATYYC LQDYSWPPYS FGSGTRLEIK HuVK4-1
DIVMTQSPDSLAVSLGERATINC KSSQSVLYSSNNKNYLA WYQQKPGQPPKLLIY WASTRES
GVPDRFSGSGSGTDFTLTISSLQAEDVAVYYC QQYYSTP KAPPA#53
ETTLTQSPSSVTASVGEKVTINC KSSQNVGSGSNQKSILN WIQQRPGQSPRLLIY YASTRDA
GIPDRFSGSGSATDFTLTIRSVQPEDAAVYYC QQVNIAPYT FGSGTRLEIR KAPPA#50
EIVMTQSPSSVTASAGEKVTINC KSSQSVFQSSNQKNYLG WYQQRIGQSPRLLIN WASTRES
GVPDRFSGSGSTTDFTLTINPFQPEDAAVYYC QQGKSAPLT FGQGTKVELK KAPPA#20
DIVMTQTPSSVTASIGEKVTINC KSSQSVLYSSNQKNYLT WYQQRLGQSPRLLIY WASTRES
GVPDRFSGSGSLTTFTLTISSFQPEDAAVYFC QQGYSVPLT FGRGTKVELK KAPPA#48
ETTLTQSPSSVTASAGEKVTINC KSSQSVLLDSNQKNYLA WYQQRLGQSPRLLIY WASTRQS
GVPDRFSGSGSTTDFTLTISSFQPEDAAVYYC QQGITIPVT FGQGTKVELK KAPPA#55
EIVLTQSPSSVTASAGEKVTINC KSSQSVLYSSDQKNYLA WYQQRPGQSPRLLIY WASTRES
GVPDRFSGSGSTTDFTLTISSFQPEDAAVYYC QQGYSSPHS FGSGTRLEIK KAPPA#9
ETTLTQSPSSVTASAGEKVTINC KSSQSVLYRSDQKNVLS WYQQRLGQSPRLLIY WASTRES
GVPDRFSGSGSTTDFTLTISSFQPEDAAVYYC QQGYSRPYS FGNGTRLEIK KAPPA#51
DIVMTQTPSSVTASAGEKVTINC KSSQSVLNNSDQKIYLA WYQQRLGQSPRLLIY WASTRES
GVPDRFSGSGSTTDFTLTISSFQPEDAAVYYC QQEYSAPAS FGSGTRLEIK KAPPA#10
DIVMTQSPGSVTASTGENITINC KSSQNVLLSSDQKNYLN WYQQRLGQSPRLLIY WASTRKS
GIPDRFSGRGSTTDFTLTINSFQPEDAAVYYC QQGYSIPHT FGGGTRLEIK KAPPA#54
DIVMTQTPTSVTASAGEKVTINC KSSQSLLYSANQKVYLA WYQQRLGQSPRLLFR WTSTRQP
GIPDRFSGSGSTTDFTLTISRVQPEDAAVYYC QQAYARPHT FGSGTRLEIK KAPPA#49
DIVMTQTPTSVTASAGEKVTINC KSSQSLLYSANQKVYLA WYQQRLGQSPRLLFR WTSTRQP
GIPDRFSVSGSTTDFTLTISSVQPEDAAVYYC QQAYARPHT FGSGTRLEIK KAPPA#52
EIVMTQSPTSVTASVGEKVTINC KSSQSLLYSANQKVYLA WYQQRLGQSPRLLFY WTSTRQS
GIPDRFSGSGSTTSFTLTISGVQPEDAAVYYC QQAYTRPHT FGSGTRLEIR KAPPA#13
EIVLTQSPSSVTASVGEKVTINC KSSQSVKSGSNQITYLN WYQQTPGQSPRLLIY YASTQEL
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQAYSAPFS FGSGTRLEIK KAPPA#11
ETTLTQSPSSVTASVGEKVTINC KSSQSVVSGSNQKIYLN WYQQRPGQSPRLLIY YASTQES
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQGASAPVS FGSGTRLEIK KAPPA#36
DIVMTQTPSSVTASVGETVTIGC KSSQSVVSGSSQKSFLN WYQQRPGQSPRLLIY YASTLEL
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQAYSTPST FGPGTKLEIR KAPPA#25
DIVMTQTPRSVTASVGEKVTINC KSSQSVLSGSNQKSYLN WYQTRPGQSPRLLIY YASTQES
GIPDRFSGSGSTTDFTLTISGVQPEDAAVYYC QQAYSAPAT FGQGTTVEVI KAPPA#12
DVVMTQSPSSVTASVGEKVTINC KSSQSVRSGSNEKSSLN WYQQRPGQSPRLLIY YASTQES
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQAYSYPIT FGQGTKVELK KAPPA#34
DVVMTQSPSSVTASVGEKVTIDC KSSQILVSGSDQKSYLS WYQQRPGQSPRLLIY YASTQKL
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQTYEAPYS FGNGTRLEIK KAPPA#48b
EIVMTQTPSSVTASVGEKVTINC KSSQSVVLASNQKTYLN WYQQRPGQSPRLLIY YASTQQL
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQALSAPYS FGSGTRLEIK KAPPA#21
DVVMTQSPSSVTASVGEKVTINC KSSQSVVSGSNQKSYLN WYQQRPGQSPRLLIY YASTQEL
GIPDRFSGSGSTTDFTLTISSVQPEDAAVYYC QQAYSTPYS FGSGTRLEIK KAPPA#24
EIVMTQSPSTVTASVGEKVTIKC KSSQSVVSGSNQKTYLN WYQQRPEQSPRLLMY YAATPEL
GIPDRFSGSGSTTDFTLTINSVQPEDAAVYYC QQTYSPPN FGSGTRLEIA KAPPA#22b
DVVMTQSPSSVTASAGEKVTINC KSSQSLLWSDNKKNYLS WYQQRLGQSPRLLIY WASTRES
GAPDRFSGSGSTTDFTLTISNFQPEDAAVYYC QQGYSIPIT FGQGTKVELS KAPPA#45
DIVLTQSPSSVTASAGEKVTITC ESSQSVLRSSNQRNYLN WYQQRLGQSPRLIIY WASTRES
GVPDRFSGSGSTTDFTLTISSFQPEDAAVYYC QQASSLPFT FGQGTKVELK KAPPA#46
EIVLTQSPSSVTASAGEKVTINC KSSQSVLYSSNQKNYLA WYQQRLGQSPRLLIY WASTRES
GVPDRFSGSGSTTDFTLTISSFQPEDAAVYYC QQYLSGVT FGQGTKVELK
TABLE-US-00023 14. (C) VH (SEQ ID NOS: 187-226) H1 H2 FR1 CDR1 FR2
CDR2 FR3 1 2 3 4 5 6 7 8 9 123456789012345678901234567890 1ab2345
67890123456789 012abc3456789012345 67890123456789012abc345678901234
VH1(1-02) QVQLVQSGAEVKKPGASVKVSCKASGYTFT G--YYMH WVRQAPGQGLEWMG
WINP--NSGGTNYAQKFQG RVTMTRDTSISTAYMELSRLRSDDTAVYYCAR 1C2
EVQLVQSGAELRNPGASVKVSCKASGYTFT S--YYID WVRQAPGQGLEWMG
RIDP--EDGDTKYAPKFQG RVTFTADTSTSTAYVELSSLRSEDTAVYYCAR SGRYELDY
WGLGTQVTVSS 1G5 EVQLVQSGAELRNPGASVKVSCKASGYTFT S--YYIE
WVRQAPGQGLEWMG RIDP--EDGGTKYAQKFQG RVTFTADTSTSTAYVELSSLRSEDTAVYFCAT
SGATMSDLDSFGS WGQGTQVTVSS VH3(3-23) EVQLLESGGGLVQPGGSLRLSCAASGFTFS
S--YAMS WVRQAPGKGLEWVS AISG--SGGSTYYADSVKG
RFTISRDNSKNTLYLQMNSLRAEDTAVYYCAK 5B12
EVQLVESGGGLVQPGGSLRLSCTTSGFTFE D--YPMN WVRQAPGKGLEWVS
VISR--NGGSTYYAESMKG RFTISRDNAKNTLYLVMNSLTSEDTAVYYCTK PSTSWSTNYGMDY
WGKGTQVTVSS 1G4 EVQLVESGGGLVQPGGSLRLSCAASGFTFD D--YGMS
WVRQAPGKGLEWVS GITW--NGGTTNYADSVKG RFTISRDSAKNMVHLQMDSLKSEDTAVYYCAK
AYRGST LGQGTQVTVSS 5G7 EVQLVESGGGLVQPGGSLRVSCAASGFTFS T--YYMS
WVRQAPGKGLEWVS GINT--GGDSTYYADSVMG RFTISRDNAKNTLSLQMNSLKPEDTALYYCAR
DLRDYYSDYTFVN WGQGTQVTVSS VH_99 EVQLVESGGGLVQPGGSLRLSCSASGFRFS
T--YAMT WVRQAPGKGLVWVS TVDA--SGATTSYAESVKG
RFTISRDNTKGALYLQMNSLKFEDTAVYYCGT RSGTWWRGSYIYTESEENG WGQGTQVTVSS
VH_76 EVQLVESGGGLVQSGGSLRLSCAASGFTFS D--YAMI WVRQAPGKGLEWVS
SINN--GGWSTRYADSVKG RFTISRDNAKNTLYLQMNSLKPEDTALYYCAR
EGYYSDYAAVGHAYDY WGQGTQVTVSS VH_86 EVQLVQSGGGLVQPGGSLRLSCAASGFTFS
R--YSMS WVRQAPGQGLEWVS YIDS--DGATTTYADSVKG
RFTISRDNAKNTLNLQMNSLKPDDAGVYYCAS FGSSAYSWGYLGMDH WGKGALVTVFS VH_98
EVQLVESGGGLVQPGGSLRLSCAASGFTFS I--YGMS WVRQAPGKGLEWVS
VINS--GGDSTSYADSVKG RFTISRDNAKNTLYLQMNNLKPEDTAVYYCAK GGVLGHSNYYAMDY
WGKGTLVTVSS VH_89 EVQLVESGGGLVQPGGSLRLSCSASGLTAS N--TAMA
WVRQVPGKQLEWVS DINS--LGNNIFYSKSVKG RFTIARDKTKNTLVLSMNSLSPEDTAVYYCVA
DASALSWSRPALEV WGQGTLVTVSD VH_82 EVQLMQSGGGLAQPGGSLRLSCAASGFTLS
N--HWMY WVRQAPGKGLEWVS AISS--SGSSTYYIDSVKG
RFTISRDNAKNTLYLQMNSLKAEDKGVYYCGK DESRGIEPGWGSIY WGQGTQVTVSS VH_68
EVQLVQSGGGLVQPGGSLRLSCAASGFAFS S--SDMS WVRQAPTKGLEWVS
GINS--GGGSTYYGESMKG RFTISRDNAKNTLYLQMSSLKPEDTAVYYCTR YDSFGWNVRYGMDY
WGKGTLVTVSS VH_73 EVQLVQSGGDLVQPGGSLRLSCAASGFAFS S--YHIS
WVRQAPGKGLEWVS IIGR--WGADIYYADSVKG RLTISRDNAKNTVYLQMNSLKPEDTAVYYCTA
ELNWEPENAYSDH WGQGTQVTVSS VH_107 EVQLVESGGGLVQPGGSLRLSCVGSGITFS
K--YAMS WVRQAPGKGLEWVS NIDA--NSELTTYEDTVKG
RFTISRDNVKNTLYLQMNSLKPEDTAVYYCTK DPRNSWYTYGMDY GGKGTLVVVSS VH_94
EVQLVQSGGGLVQPGGSLRLSCAASGFTFS S--YYMN WVRQPPGKGLEWLS
VISS--SGGNTKYSDSVKG RFTISRDNAKNMVYLQMNSLKPEDTAVYYCAK RIEGGMGYGMDY
WGKGTPVTVSS VH_90 EVQLVQSGGGLVQPGGSLRLSCAASGFTFD D--YGKT
WVRQAPGKGLEWVS SIYI--FVGNTYYADSVKG RFTISRDNAGNTLYLQMTNLKPEDTAKYFCVK
SPEWTYYYGMDS WGKGTLVTVSS VH_77 EVQLVQSGGGLVQPGGSLRLSCAASGFTFS
S--YAMS WVRQAPGKGLEWVS TISS--GGASTTYADSVKG
RFTISRDNAKNTLYLQMNSLKPEDTAVYYCAK SFGLVTGVYFGS WGQGTQVTVSS VH_74
EVQLVQSGGGLVQPGGSLRLSCAASGFAFS D--YDMS WVRQAPGKGLEWVS
IHVS--GDGRIFYADSMKG RFTISRDNAKNTMYLQLNSLKPEDTAVYYCAA DSYHAATGYLEQ
WGQGTLVTVSS VH_67 EVQLVQSGGGLVQPGGSLRLSCAASGFRFT D--YYMG
WIRQTPGKGLEWVS SIYS--LGDPTYYADSVKG RFTISRDNGKDTVYLEMNSLKSDDTGLYYCAR
DHRGWGTIRYDY WGQGTQVTVSS VH_79 EVQLVESGGGLVQPGGSLRLSCAASGFAFS
R--YWMY WVRQAPGKGLEWVS GMTT--GSDYIYSAVSVKG
RFTISRDNAKNTLYLQMNSLKFEDTAVYYCAK GGVIDADHFES WGQGTQVTVSS VH_75
EVQLVGVWGRLGAPGGSLRLSCAASGFPFS I--YFMS WFRQRPEKGARMVS
DIDK--SGGRTTYAPSVKG RFTASRDNAKNTLYLTINTLEPNDTAVYYCAK PTSSMWSPGDY
WGQGTQVTVAS VH_110 EVQLVQSGGDLVQPGGSLRVSCAVSGFTFI Y--YGMS
WVRQSPGKGLEWIS TISN--GGSTANYADSVKG RFTISRDNAKNTLYLEMNDLKPEDTALYYCAR
ISTELGNTLDA WGQGSLVTVSS VH_109 EVQLVESGGGLVQPGGSLRLSCTASGFTFS
S--YGIS WVRQAPGKGLEWVS SVTG--DGLSTTAIDSVKG
RFTITRDNAKNTVYLQMNNLKLDDTAVYYCAK LDVYVDYGMDY WGKGTLVTVSS VH_103
EVQLVQSGGGLVQPGGSLRLSCAASGFTFR S--YYMN WVRQAPGKGLEWVS
VSSS--GGGTTYYADSVKG RFTISRDNAQNTLYLQMNSLKPEDTALYYCAR ESGGPGMDLEV
WGQGTLVTVSS VH_84 EVQLVESGGGLVQPGGSLRLSCAASGFTFS S--YAMS
WVRQAPGKGLEWVS GINS--GGGSTSYADSVKG RFTISRDNAKNTLYLQMNSLKPEDTAVYYCAK
WEVVTLDFGS WGQGTQVTVSS VH_113 EVQLVESGGGLVQPGRSLRLSCAAAGFTFS
T--YWMY WIRQAPGKGLEWVA TITS--LGGSQWYVDSVKG
RFTISRDNAKNTLYLQMNSLKPEDMAQYYCVR GGLYGYDYEH WGQGTQVTVSS VH_87
EVQLVESGGGLVKPGGSLRLSCAASGFTFS S--AYMN WVRQAPGKGLEWVS
GLTN--YGSTSYYADSVKG RFTISRDNTVNTVYLQLNSLKPEDTGLYYCAR VGNMWSSDY
WGQGTQVTVSS VH_105 EVQLVESGGGLVQPGGSLRLSCAASGFTFS N--YWMY
WVRQAPGKGLEWVS SIDT--SGGITMYADSVKG RFTISRDNAKNTLYLQMNSLKSEDTALYYCAK
ALGYNAFDA WGRGTLVTVSS VH_101 EVQLVESGGGLVQPGVSLRLSCTTSGFTFS T--QGMN
WVRQPPEKGLEWVS GIDS--RGNTTNYADSVKG RFTISRDNAKNALYLQMNDLRPDDTAMYYCTN
TGPWYTYNY WGQGTQVTVSS VH_108 EVQLVQSGGGLVQPGGSLRLSCAASGFTFS S--YWMY
WVRQAPGKGLDWIS GISV--GGASTYYARSVQD RFTISRDNTKNTLYLQMSSLRSEDTAVYWCTR
GGNTPYDY WGQGTQVTVSS VH_106 EVQLVQSGGGLVQPGGSLRLSCAASGFNFD D--YPMT
WIRQAPGKGLEWVA SIYS--GISTTYYPDSVKG RFTISTNDAKNTVYLQMNDLKSDDTAVYYCAN
PRRNY WGQGTHVTVSS VH3(3-13) EVQLVESGGGLVQPGGSLRLSCAASGFTFS S--YDMH
WVRQATGKGLEWVS AIG---TAGDTYYPGSVKG RFTISRENAKNSLYLQMNSLRAGDTAVYYCAR
VH_115 EVQLVESGGGLVQPGGSLRLSCAASGFTSS T--YAMS WVRQGPGKALEWVS
TIN---GADFTSYVDSVKG RFTISRDNTKNTLYLQMNSLKPEDTAVYYCAK GLSGLNWYGFGDY
WGQGTQVTVSS VH_85 EVQLVQSGGGLVQPGGSLRLSCAASGFTFS T--YWMY
WVRQAPGKGLEYVG SID---NDGFTYYSEDVKG RFTISGDNARNTLYLQINSVKPEDTALYYCVR
GVYYMDYEPRMDY WGKGTLVTVSS VH_114 EVQLVESGGGLVQPGGSLRLSCTASGFTFS
T--HTMS WVRQAPGKGLEWVS GIN---SAYGTIYIDSVKG
RFTISRDNAKNTLYLQMNSLKPDDTAVYYCVQ VVDTWDEYDY WGQGTQVTVSS VH_78
EVQLVESGGGLVQPGGSLRLSCAASRFTFG T--SGMT WVRQAPGKGLEWVS
TIN---SGGLTTSADSVKG RFTISRDNGKNTLYLQMDSLKPDDTAVYYCAN LLELGH
WGRGTQVTVSS 3B5 EVQLVQSGGGLVQPGGSLRLSCAASGFTFS S--YWMY
WVRQAPGKGLEWVS TIT---KGGSTYYSDSVKG RFTISRDNAKNTLYLQMNSLKSEDTAVYYCAK
SNSGTHWYEYYGMDY WGKGTLVTVSS 3A3 EVQLVESGGGLVQPGDSLRLSCAASGFTFG
N--YDMS WVRQAPGKGPEWVS GIN---SGGKTYSADSVKG
RFTISRDNAKNTLYLQMNNLKPEDTAVYYCIL GIVTLGS WGQGTQVTVSS
Example 15
Generating Fabs Against IL-1Beta
[0306] Unless otherwise indicated, the materials and protocols used
in the following study were analogous to those used in examples
1-9.
Llamas were Successfully Immunized with IL-1Beta
[0307] Two llamas (Lama glama) were immunized with human IL-1Beta
according to a standard protocol (as described in Example 1).
[0308] Sera from both llamas were tested for the presence of
antibodies against IL-1Beta by ELISA prior (day 0) and after
immunization (day 28). As shown in FIG. 1, a specific signal
against IL-1Beta was observed in ELISA after immunization, even
after 10,000 fold dilution of the serum. This high antibody titer
indicates a specific and appropriate immune response.
Fab Libraries with Good Diversity were Constructed
[0309] PBLs isolated from both immunized llamas were used for RNA
extraction, RT-PCR and PCR-cloning of Fab in a phagemid using the
strategy described by de Haard et al (JBC 1999), to obtain a
diverse library of good diversity (2-5.times.10.sup.8).
[0310] The following primers were used:
Primers for Cloning of Lambda Light Chain (SEQ ID NOS: 227-240)
TABLE-US-00024 [0311] Name Sequence HuVI1A-BACK-ApaLI GCC TCC ACC
AGT GCA CAGTCTGTGYTGACKCAGCC HuVI1B-BACK-ApaLI GCC TCC ACC AGT GCA
CAGTCTGTGYTGACGCAGCC HuVI1C-BACK-ApaLI GCC TCC ACC AGT GCA
CAGTCTGTCGTGACGCAGCC HuVI2-BACK-ApaLI GCC TCC ACC AGT GCA
CAGTCTGCCCTGACTCAGCC HuVI3A-BACK-ApaLI GCC TCC ACC AGT GCA CTT
TCCTATGAGCTGACWCAGCC HuVI3B-BACK-ApaLI GCC TCC ACC AGT GCA CTT
TCTTCTGAGCTGACTCAGGA HuVI4-BACK-ApaLI GCC TCC ACC AGT GCA
CAGCYTGTGCTGACTCAATC HuVI5-BACK-ApaLI GCC TCC ACC AGT GCA
CAGGCTGTGCTGACTCAGCC HuVI6-BACK-ApaLI GCC TCC ACC AGT GCA CTT
AATTTTATGCTGACTCAGCC HuVI7/8-BACK-ApaLI GCC TCC ACC AGT GCA
CAGRCTGTGGTGACYCAGGA HuVI9-BACK-ApaLI GCC TCC ACC AGT GCA
CWGCCTGTGCTGACTCAGCC HuVI10-BACK-ApaLI GCC TCC ACC AGT GCA
CAGGCAGGGCTGACTCAGCC caClambda1-FOR CTAACACTGGGAGGGGGACACCGTCTTCTC
caClambda2-FOR CTAACACTGGGAGGGNCTCACNGTCTTCTC
Primers for Cloning of Kappa Light Chain (SEQ ID NOS: 241-249)
TABLE-US-00025 [0312] Name Sequence HuVk1B-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GACATCCAGWTGACCCAGTCTCC HuVk2-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GATGTTGTGATGACTCAGTCTCC HuVk3B-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GAAATTGTGWTGACRCAGTCTCC HuVk2/4-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GAYATYGTGATGACCCAGWCTCC HuVk5-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GAAACGACACTCACGCAGTCTCC HuVk6-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GAAATTGTGCTGACTCAGTCTCC HuVk4B-BACK-ApaLI GCC TCC ACC
AGT GCA CTT GATATTGTGATGACCCAGACTCC caCHkapFOR-AscI GCC TCC ACC GGG
CGC GCC TTA TTAGCAGTGTCTCCGGTCGAAGCTCCT caCHkap2FOR-AscI GCC TCC
ACC GGG CGC GCC TTA TTARCARTGYCTNCGRTCRAA
Non-Tagged Primers for Cloning of Heavy Chain (Step 1) (SEQ ID NOS:
347-351)
TABLE-US-00026 [0313] Name sequence VH1a-BACK
CAGGTKCAGCTGGTGCAGTCTGG VH5a-BACK GARGTGCAGCTGGTGCAGTCTGG VH4a-BACK
CAGSTGCAGCTGCAGGAGTCTGG VH4b-BACK CAGGTGCAGCTACAGCAGTCTGG VH2b-BACK
CAGGTCACCTTGARGGAGTCTGG
Tagged Primers for Cloning of Heavy Chain (Step 2) (SEQ ID NOS:
352-356)
TABLE-US-00027 [0314] Name sequence VH1a-BACK-Sfil CTC GCA ACT GCG
GCC CAG CCG GCC ATG GCCCAGGTKCAGCTGGTGCAGTCTGG VH5a-BACK-Sfil CTC
GCA ACT GCG GCC CAG CCG GCC ATG GCCGARGTGCAGCTGGTGCAGTCTGG
VH4a-BACK-Sfil CTC GCA ACT GCG GCC CAG CCG GCC ATG
GCCCAGSTGCAGCTGCAGGAGTCTGG VH4b-BACK-Sfil CTC GCA ACT GCG GCC CAG
CCG GCC ATG GCCCAGGTGCAGCTACAGCAGTCTGG VH2b-BACK-Sfil CTC GCA ACT
GCG GCC CAG CCG GCC ATG GCCCAGGTCACCTTGARGGAGTCTGG
[0315] Independent V.lamda.C.lamda. and V.kappa.C.kappa. libraries
were constructed using a single (tagged)-PCR step (30 cycles) to
conserve a greater clonal diversity.
[0316] The VHCH1 libraries were built in parallel using a two step
PCR (25 cycles with non tagged primers (step 1) followed by 10
cycles of tagged primers (step 2)).
[0317] Next, the light chain from the V.lamda.C.lamda. and
V.kappa.C.kappa. libraries are re-cloned separately in the
VHCH1-expressing vector to create the "Lambda" and "Kappa" llama
Fab-library respectively (two for each immunized llama). Quality
control of the libraries was routinely performed using PCR.
[0318] Up to 93% of the clones tested randomly contained full
length Fab sequences, indicating a high quality of the
libraries.
Human IL-1Beta Specific Fabs were Selected
[0319] Phage display was used to identify a large diversity of
llama Fabs binding to biotinylated IL-1Beta. Biotinylated IL-1Beta
was used for capturing to conserve the active conformation of the
protein. After two rounds of selection, a good enrichment compared
to control was observed. Phage ELISA revealed presence of clones
expressing cytokine specific Fabs (data not shown).
[0320] The phage binding to biotinylated IL-1Beta were eluted by pH
shock. Sequential dilutions of the output (10.sup.-1 to 10.sup.-5)
were used to infect fresh E. coli TG1 cells. The number of colonies
obtained indicate the number of phage bound during the selection.
In the example above, 5 .mu.l of output gave around 10.sup.5 phage
when selection was done with 100 nM and 10 nM of biot-IL-1Beta.
Compared to the 10.sup.2 phages obtained by non-specific binding,
this gives a 1000 fold enrichment.
[0321] 94 Single clones were grown and used to produce monoclonal
phage. These phage were used in a phage ELISA. Many phage showed
good binding to biot-IL-1Beta after two rounds of selection on
biotinylated IL-1Beta.
Human IL-1Beta Specific Fabs have High Starting Homology to Human
Germline
[0322] Target specific VH and V.lamda. domains were matched with
those common human germlines showing an identical CDR1 and CDR2
length and corresponding canonical folds. Subsequently the closest
human germline was selected based on sequence homology in their
framework regions. Non-matching amino acid residues were checked
for their presence in other, related human germlines. In case there
was no match, these residues were counted as foreign.
TABLE-US-00028 TABLE 7 Overall sequence homology of llama VH to
human germline Closest Human % Sequence Germline Matching Clones
Homology IGHV1-2 1C2/2B7/2C12 93 2D8 94 1G5/2D7 93 2E12/2G7 94
IGHV3-23 1F2 98 1G4 92 5G7 95 5B12 92 1A1/2B8/2B9 98 1C3/1E3/2A7 98
IGHV3-13 1E2 94 3A3/3B6/3E2/3E3 95 3B5/4F1 98 IGHV3-20 4H1 94 4H4
93
TABLE-US-00029 TABLE 8 Overall sequence homology of llama VL to
human germline Closest Human Matching % Sequence Germline Clones
Homology IGLV8-61 1E2 90 1F2 90 3E2/3E3/3A3 86 3B5/4F1 86 IGLV2-18
3B6 91 IGLV5-52 1G4 VL 96 IGLV3-19 1C2/2B7/2D7 95 2E12/2G7 96 2D8
95
DISCUSSION AND CONCLUSIONS
[0323] A total of 14 target specific VH families, 9 target specific
V.lamda. families and 3 VK families were identified based on this
very first selection [0324] This initial panel of 14 anti-IL-1Beta
WT VH's and 12 anti-IL-1Beta WT VL's shows a remarkably high
sequence homology to the human germline. [0325] 33% of those VH
domains have a starting homology of 95% or more to the human
situation and about 44% of the VL domains have a starting homology
of 95% or more to the human situation, eliminating the need for
further humanization. [0326] VH domain 2D8 is a humanized version
of VH 1C2 because it has one deviating amino acid residue less as
compared to the closest human germline. Its corresponding VL domain
(VL 2D8), had a starting homology of 95% which was further
increased to 96% by 1 back mutation (VL 2G7) to the closest human
germline. [0327] All VH and VL domains, without a single exception,
exhibited human 3-D binding site structures (i.e. identical
combinations of canonical folds for CDR1 and CDR2 as occurring in
the matching human germline segments) when assessed using the
methodology described above (data not shown).
Humanization of Fabs 1E2 and 1F2
[0328] Humanization was performed on two IL-1Beta specific Fabs
coded 1E2 and 1F2. Based on the alignment against the closest human
germlines, mutations in their VH and V.lamda. framework regions
were proposed (FIG. 2). The germlining of VH matching to the human
VH3 family will often involve a number of residues, which already
deviate in publically known Lama glama, Lama pacos or Camelus
dromedarius derived germline sequences. For instance, Alanine on
position 71 (numbering according to Kabat) and Lysine on 83 and
Proline on 84 might be changed into Serine (although Alanine exists
in certain human germline VH3 members), Arginine (although Lysine
is used by a number of human VH3 germlines) and Alanine,
respectively. For light chain variable sequences no germline
sequences are available for Camelids, but it is very likely that a
number of deviations in FRs from human germline exists that will be
changed in the majority of lead antibodies. Besides the fully
humanized (hum) and the wild type (wt) V regions, also a "safe
variant" with only three wild type residues remaining was proposed
(safe).
[0329] Fab 1E2 was formatted in a step-by-step approach, whereby
the different versions (wt, safe and fully humanized) of the
V.lamda. fused to the human constant domain were combined with
various versions of the VH fused to the human constant CH1 domain
to generate the Fabs indicated in Table 9.
TABLE-US-00030 TABLE 9 Fab 1E2 formats VH 1E2 + hum CH1 wt safe hum
VL 1E2 + humCL wt wt 1E2 wt/safe wt/hum safe safe/wt safe 1E2
safe/hum hum hum/wt hum/safe hum 1E2
[0330] The genes of these Fabs were ordered as synthetic genes with
GeneArt (Germany) and were subsequently produced in E. coli,
purified and tested for their ability to bind biot-IL-1Beta. For
this the Fabs were captured on an anti-myc coated Maxisorp plate.
Biotinylated human IL-1Beta was added and bound cytokine was
detected using HRP-conjugated streptavidin. The read out of this
assay is represented in FIG. 3 below. [0331] The replacement of the
wild type constant domains CH1 and CA by their human counterpart
did not affect the binding capacity. [0332] Partial (wt
V.lamda./safe VH) and complete (wt V.lamda./hum VH) humanization of
the VH domain of 1E2 generated a functional Fab.
[0333] The humanized variants of clone 1F2 were tested with phage
expressing gene3-Fabs fusions (FIG. 4). Phage were produced from 4
independent clones for each construct: [0334] wt 1F2 and wt 1E2
(llama V.lamda. and VH fused to human CA and CH1) [0335] safe
variant 1F2 and safe variant 1E2 (partially humanized V.lamda.
fused to human CA and CH1) [0336] hum 1F2 and hum 1E2 (fully
humanized V.lamda. and VH fused to human CA and CH1)
[0337] Four clones for each Fab were tested to overcome clonal
variation (due to bacterial growth, phage production efficiency and
toxicity etc. . . . ). Phage ELISA was performed by capturing of
biotinylated IL-1Beta on neutravidin coated Maxisorp plate and
subsequent incubation of crude phage extract (i.e. bacterial
medium). After extensive washing, bound phages were detected with
an anti-M13-HRP monoclonal antibody. The same phage preparations
when tested on neutravidin coated wells (without biotinylated
IL-1Beta) did not give signals (data not shown). [0338] Back
mutations in the framework regions of 1F2 VL and VH domains to the
closest human germline successfully yield partially (safe) and
fully (hum) humanized variants, maintaining antigen specificity.
Successful Formatting of Camelid Variable Domains with Human
Constant Domains
[0339] The VL and VH variable domains of the IL-1Beta specific
clone 1E2 were successfully fused to the human CA and CH1 constant
domains, resulting in a "chimeric" Fab which was produced and
purified.
[0340] This chimeric 1E2 Fab was produced by performing the
induction for 4 h at 37.degree. C. (o/d) or for 16 h and 28.degree.
C. (o/n) from the pCB5 phagemid (.DELTA.gene3). The wild type llama
1E2 Fab was produced by performing induction for 16 h at 30.degree.
C. from pCB3 (gene3 containing phagemid). After purification, these
Fabs were loaded on SDS-PAGE with (reducing) or without
(non-reducing) DTT. Coomassie staining was performed, nicely
showing the presence of these Fabs or their composing light and
heavy chains at the expected molecular weight band (not shown).
[0341] The purified llama and chimeric 1E2 Fabs described above
were captured on anti-myc coated maxisorp plates. After incubation
with biotinylated human IL-1Beta and extensive washing, the
biotinylated IL-1Beta bound to the Fab was detected using
HRP-conjugated streptavidin. Both the purified llama and chimeric
1E2 Fabs exhibited functional target binding (FIG. 5). This finding
demonstrates the feasibility to associate Camelid derived variable
domains with the constant domains of human IgGs
A Subset of Fabs Showed Functional Inhibition of the Target
[0342] The table below shows the OD values resulting from the
following ELISA experiment. Wells were coated with a mouse
monoclonal antibody known to inhibit the binding of IL1-Beta with
its receptor (provided by Diaclone SAS).
[0343] Biotinylated IL-1Beta was added to the wells together with
periplasmic extracts of Fabs identified after 2 rounds of selection
against biotinylated IL-1Beta. Detection of the bound biotinylated
IL-1Beta happened through HRP labeled streptavidin. A reduced
signal indicated the competition of a specific Fab with the
blocking mouse monoclonal antibody, suggesting antagonism.
[0344] A positive control was included in well G12 by spiking in a
large amount of the competing mouse monoclonal (well 12G in Table
10).
TABLE-US-00031 TABLE 10 Results of competition assay
##STR00001##
[0345] A number of Fabs were identified which successfully compete
with the blocking mouse monoclonal antibody (indicated by shaded
cells in Table 10). Sequence analysis of the competing clones
revealed the presence of three Fabs with different VH, which were
present in 48 screened clones (part of the plate coded 6A in Table
10). The sequences alignments (SEQ ID NO: 21 and SEQ ID NO: 250;
SEQ ID NO: 21 and SEQ ID NO: 251; and SEQ ID NOS: 254, 252, and
253) against the closest human germline and the structural homology
analysis of the VH of the antagonistic Fab 1A1 (giving a signal of
0.205 in the competition assay of Table 10), 1B3 (signal of 0.444)
and the related clone 1G1 (signal of 0.498) and finally 1C3 (signal
of 0.386) are shown below.
[0346] All three have a very high degree of sequence homology with
the matching human germline and have the identical canonical fold
combinations as found in the human germline. This was also observed
for the lambda light chain in the three antagonistic leads (data
not shown). Fab 1A1 competes strongly with the antagonistic
reference monoclonal antibody (1050 of 12 .mu.g/ml in ELISA based
competition assay), whereas Fab 1C3 hardly shows competition (only
at concentrations of more than 50 .mu.g/ml). However, in the
bioassay 1C3 is more potent (1050 of 3 .mu.g/ml) than 1A1 (1050 of
10 .mu.g/ml), which suggests a different epitope recognition. The
high frequency of different antagonistic Fabs (3 different
antibodies in 48 screened clones) and the difference in epitope
recognition as found for two of these illustrates the high
diversity of antibodies as the result of the outbred nature of the
lama. The high degree of sequence homology with human germline V
regions combined with the high diversity of (potent) antibodies and
the broad epitope coverage enables the identification of panels of
therapeutic antibodies from immunized camelids.
TABLE-US-00032 IGHV gene CDR1 CDR2 Kabat FR/CDR FR1-Kabat Kabat
FR2-Kabat Kabat IMGT numbering 1 10 20 30 40 50 60 70
.........|.........|.........| .........| .........|....
.....|........|.... M99660, IGHV3-23 EVQLLESGG.GLVQPGGSLRLSCAASGFTF
SSYA....MS KVRQAPGKGLEKVS AIGGGGGST..YYADSVK.G VH-1A1, 3BB, 3D9
EVQLVESGG.GLVQPGGSLRLSCAASGFTF DDYA....MS KVRQAPGKGLEKVS
TISWNGGAT..YYAESMK.G 5 V primer encoded and also in all other class
3 except 3-22 83 A occurs in all VH2 family members except 3-22 95
K also in IGHV3-L3/49/66/72 and classes 5 and 7 96 S not in class 3
but in class 1 127 Q not in human germline Overall homology 84/86
framework residues = 98% homology Canonical folds analysis CDR H1
Class 1/10A [2fbj] CDR H2 Class ? ! Similar to class 2/10B, but: !
H56 (Chothia Numbering) = A (allows: SYTNDR) IGHV gene CDR1 CDR2
Kabat FR/CDR FR1-Kabat Kabat FR2-Kabat Kabat IMGT numbering 1 10 20
30 40 50 60 70 .........|.........|.........| .........|
.........|.... .....|........|.... M99660, IGHV3-22
EVQLLESGG.GLVQPGGSLRLSCAASGFTF SSYA....MS KVRQAPGKGLEAVS
AISGSGGST..YYADSVK.G VH-1C3, 1E3, 2A7
EVQLLESGG.GLVQPGGSLRLSCAASGFTF SSYA....MY KVRQAPGKGLEAVS
AINTGGGRT..YYADSVK.G 5 V primer encoded and also in all other class
3 except 3-23 83 A occurs in all VH3 family members except 3-23 95
K also in IGHV3-13/49/66/72 and classes 5 and 7 96 S not in class 3
but in class 1 127 Q not in human germline Overall homology 84/86
framework residues = 98% homology Canonical folds analysis CDR H1
Class 1/10A [2fbj] CDR H2 Class ? ! Similar to class 2/10A, but: !
H71 (Chothia Numbering) = R (allows: VAL) IGHV gene CDR1 CDR2 Kabat
FR/CDR FR1-Kabat Kabat FR2-Kabat Kabat IMGT numbering 1 10 20 30 40
50 60 70 .........|.........|.........| .........| .........|....
.....|........|.... X07448, IGHV1-2 QVQLVQSGA.EVKKPGASVRVSCKASGYTF
TGYYMK.... WVRQAPGQGLEWMG RINPNSGGT.. NYAQRTQ.G VH-1B3, 1G2, 2D8
EVQLVQSGA.ELRNPGASVKVSCKASGYTF TSYYID.... WVRQAPGQGLEWMG
RIDPEDGGT.. KYAQRTQ.G VR-1G1, 2B7 EVQLVQSGA.ELRNPGASVKVSCKASGYTF
TSYYTD.... WVRQAPGQGLEWMG RIDPEDGDT.. KYAQKTO.G 1 E primer encoded,
occurs as well in IGHV1-f 11 L occurs in class 2, 3, 4, 6 and 7 12
R not in human germline 13 N not in human germline 78 F occurs in
class 7 85 G occurs in class 7 80 A present in two class 1 members
84 T occurs in half of class 1 members 89 V not in human germline
93 S present in majority of class 1 members 97 E present in
majority of class 1 members 127 Q not in human germline Overall
homology 79/86 framework residues = 92% homology Canonical folds
analysis CDR H1 Class ? ! Similar to class 1/10A, but: ! H35
(Chothia Numbering) = D (allows: HENQSYT) ! H80 (Chothia Numbering)
= V (allows: LM) CDR H2 Class ? ! Similar to class 2/10A, but: !
H53 (Chothia Numbering) = E (allows: AGYSKTN) IGHV gene CDR3 Kabat
FR/CDR FR3-Kabat Kabat FR4(IGHJ) IMGT numbering 80 90 100 110 120
120 .....|.........|........|...... ...|.........|. .........|..
M99660, IGHV3-23 RFTISRDIIDHTLYLQVARADDTAVYYCAK VH-1A1, 3BB, 3D9
RFTISRDMARNTLYLQMISLKSEDTAVYYCAK PYYSDYVGVEYDY KGQGTQVTVSS IGHV
gene CDR3 Kabat FR/CDR FR3-Kabat Kabat FR4(IGHJ) IMGT numbering 80
90 100 110 120 130 .....|.........|........|...... ...|.........|.
.........|.. M99660, IGHV3-22 RFTISRDNSKNTLYQMISLRAEDTAVYYCAK
VH-1C3, 1E3, 2A7 RFTISRDNAKNTIYLQMNSLKSEDTAVYYCAK
GTSADGSSWYVPADPYDY KGQGTQVTVSS IGHV gene CDR3 Kabat FR/CDR
FR3-Kabat Kabat FR4(IGHJ) IMGT numbering 80 90 100 110 120 130
.....|.........|........|...... ...|.........|. .........|..
X07448, IGHV1-2 RVTSTRDTSISTAYMELSRLRSDDTVVYYCAR ...............
VH-1B3, 1G2, 2D8 RVTFTADTSTSTAYVELSSLRSEDTAVYYCAR SGRYELDY.......
WGQGTQVTVSS VR-1G1, 2B7 RVTFTADTSTSTAYVELTSLRSEDTAVYYCLR
SGAYELDY....... WGQGTQVTVSS
Example 16
[0347] The following example demonstrates the functional diversity
which can be achieved with the current invention, in comparison
with the established mouse monoclonal antibody approach.
[0348] 10 BALB/c mice were immunized with a recombinant produced
cytokine with a small molecular weight. After completion of the
immunization protocol, the animals were sacrificed, and hybridomas
were generated by immortalizing their spleen cells. Supernatant of
the resulting hybridomas was tested in the cytokine binding ELISA
and subsequently in a suitable bioassay. One highly potent
antagonist and one weaker antagonist could be identified.
[0349] Also, 4 llamas were immunized with the same recombinant
produced cytokine, using the general protocol described herein.
After completion of the immunization protocol, peripheral B
lymphocytes were harvested and their RNA was extracted and
purified. Using a set of llama specific primers, Fab libraries were
generated using the phage display technique. Those Fabs were tested
in the cytokine/cytokine receptor binding ELISA. 5 different VH
families could be identified from the first 2 llamas, and 6
additional different VH families from the next 2 llamas, which
blocked the cytokine/receptor interaction with high potency,
meaning that those VH domains contained uniquely different CDRs,
both in length and amino acid sequence.
[0350] Thus a higher functional diversity could be achieved from a
small number of outbred llamas as opposed to a higher number of
inbred BALB/c mice. All VH families obtained by active immunisation
of llamas exhibited an extraordinary sequence homology as compared
to the closest human germline and had the same canonical fold
combinations for CDR1 and CDR2 as the matching human germlines.
Example 17
[0351] The following table summarises the results of amino acid
sequence homology comparisons between germline VH domains of alpaca
(Lama pacos) and the closest matching human germline VH domains. %
homology was calculated using the same algorithm as described
herein for Lama glama. Raw VH sequence data for Lama pacos is not
shown:
TABLE-US-00033 TABLE 11 amino acid sequence homology germline VH of
Lama pacos vs human % amino acid sequence homology with closest
Alpaca (Lama pacos) matching human germline germline VH family
Frequency VH VH3 70% (36/51) .gtoreq.95% VH1 10% (5/51) 90-92% VH2
(NB Lama pacos VH2 20% (10/51) 81-88% aligns to human VH4)
[0352] The following table is provided to cross-reference
nucleotide and amino acid sequences listed herein with the sequence
listing submitted in ST.25 format for searching purposes.
TABLE-US-00034 TABLE 12 cross-reference to sequence identifiers SEQ
ID No. Sequence name 1 M99679, IGHV3-53 2 AF000603, IGHV1S1 3
AJ245151, IGHV1S2 4 AJ245152, IGHV1S3 5 AJ245153, IGHV1S4 6
AJ245154, IGHV1S5 7 AJ245155, IGHV1S6 8 AJ245157, IGHV1S7 9
AJ245158, IGHV1S8 10 AJ245159, IGHV1S9 11 AJ245160, IGHV1S10 12
AJ245164, IGHV1S11 13 AJ245165, IGHV1S12 14 AJ245167, IGHV1S13 15
AJ245168, IGHV1S14 16 AJ245170, IGHV1S15 17 AJ245171, IGHV1S16 18
AJ245173, IGHV1S17 19 AJ245174, IGHV1S18 20 AJ245156, IGHV1S19 21
M99660, IGHV3-23 22 AJ245177, IGHV1S20 23 AJ245178, IGHV1S21 24
AJ245183, IGHV1S22 25 AJ245185, IGHV1S23 26 AJ245186, IGHV1S24 27
AJ245187, IGHV1S25 28 AJ245189, IGHV1S26 29 AJ245191, IGHV1S27 30
AJ245192, IGHV1S28 31 AJ245193, IGHV1S29 32 AJ245194, IGHV1S30 33
AJ245195, IGHV1S31 34 AJ245179, IGHV1S32 35 AJ245180, IGHV1S33 36
AJ245182, IGHV1S34 37 AJ245190, IGHV1S35 38 AJ245196, IGHV1S36 39
AJ245197, IGHV1S37 40 AJ245181, IGHV1S38 41 AJ245198, IGHV1S39 42
AJ245199, IGHV1S40P 43 AF305949, IGHV1S6 44 M94116, IGLV1-40 45
Camv144 46 Z73642, IGLV2-18 47 Camvl17 48 Camvl33 49 Camvl36 50
Camvl59 51 Camvl30 52 Camvl32 53 Camvl57 54 Camvl5 55 Camvl65 56
Camvl51 57 Camvl31 58 Camvl60 59 Camvl52 60 X57826, IGLV3-1 61
Camvl19 62 Camvl20 63 Camvl8 64 Camvl18 65 Camv123 66 Z73658,
IGLV3-12 67 Camvlll 68 X59314, IGKV2-40 69 Kp6 70 Kp48 71 Kp3 72
Kp20 73 Kp7 74 Kp10 75 Kp1 76 J00256, IGHJ1 77 J00256, IGHJ2 78
J00256, IGHJ3 79 J00256, IGHJ4 80 J00256, IGHJ5 81 J00256, IGHJ6 82
AF305952, IGHJ2 83 AF305952, IGHJ3 84 AF305952, IGHJ4 85 AF305952,
IGHJ5 86 AF305952, IGHJ6 (1) 87 X04457, IGLJ1 88 M15641, IGLJ2 89
M15642, IGLJ3 90 X51755, IGLJ4 91 X51755, IGLJ5 92 M18338, IGLJ6 93
X51755, IGLJ7 94 Camvl19 etc. 95 Camvl8/18/4 96 Camvl58/28/5 97
J00242, IGKJ1 98 J00242, IGKJ2 99 J00242, IGKJ3 100 J00242, IGKJ4
101 J00242, IGKJ5 102 Kp6/48/3/20/10/1 103 Kp7 (1/7 analyzed) 104
M99660, IGHV3-23 105 IVH28 106 IVH69 107 IVH47 108 IVH48 109 IVH70
110 IVH71 111 HuVL1-1(3/4/5) 112 LAMBDA#14 113 LAMBDA#16 114
LAMBDA#46 115 LAMBDA#45 116 LAMBDA#15 117 HuVL1-2 118 LAMBDA#47 119
LAMBDA#18 120 LAMBDA#32 121 LAMBDA#28 122 LAMBDA#29 123 LAMBDA#27
124 LAMBDA#17 125 LAMBDA#4 126 LAMBDA#7 127 LAMBDA#8 128 LAMBDA#5
129 HuVL2-1 130 LAMBDA#1 131 LAMBDA#8 (2) 132 LAMBDA#5 (2) 133
LAMBDA#11 134 HuVL3-2 135 LAMBDA#13 136 LAMBDA#40 137 LAMBDA#2 138
LAMBDA#14 (2) 139 HuVL4-1 140 LAMBDA#10 141 HuVL5-1 142 LAMBDA#3
143 LAMBDA#7 (2) 144 LAMBDA#9 145 LAMBDA#26 146 LAMBDA#12 147
HuVL8-1 148 LAMBDA#42 149 LAMBDA#31 150 HuVK1-1 151 KAPPA#39 152
KAPPA#22 153 KAPPA#24 154 KAPPA#21 155 KAPPA#23 156 KAPPA#7 157
KAPPA#19 158 KAPPA#25b 159 I-_8 160 KAPPA#43 161 KAPPA#44 162
KAPPA#20b 163 HuVK4-1 164 KAPPA#53 165 KAPPA#50 166 KAPPA#20 167
KAPPA#48 168 KAPPA#55 169 KAPPA#9 170 KAPPA#51 171 KAPPA#10 172
KAPPA#54 173 KAPPA#49 174 KAPPA#52 175 KAPPA#13 176 KAPPA#11 177
KAPPA#36 178 KAPPA#25 179 KAPPA#12 180 KAPPA#34 181 KAPPA#48b 182
KAPPA#21 (2) 183 KAPPA#24 (2) 184 KAPPA#22b 185 KAPPA#45 186
KAPPA#46 187 VH1(1-02) 188 1C2 189 1G5 190 VH3 (3-23) 191 5B12 192
1G4 193 5G7 194 VH_99 195 VH_76 196 VH_86 197 VH_98 198 VH_89 199
VH_82 200 VH_68 201 VH_73 202 VH_107 203 VH_94 204 VH_90 205 VH_77
206 VH_74 207 VH_67 208 VH_79 209 VH_75 210 VH_110 211 VH_109 212
VH_103 213 VH_84 214 VH_113 215 VH_87 216 VH_105 217 VH_101 218
VH_108 219 VH_106 220 VH3 (3-13) 221 VH_115 222 VH_85 223 VH_114
224 VH_78 225 3B5 226 3A3 227 HuVl1A-BACK-ApaLI 228
HuVl1B-BACK-ApaLI 229 HuVl1C-BACK-ApaLI 230 HuV12-BACK-ApaLI 231
HuV13A-BACK-ApaLI 232 HuV13B-BACK-ApaLI 233 HuV14-BACK-ApaLI 234
HuV15-BACK-ApaLI 235 HuV16-BACK-ApaLI 236 HuV17/8-BACK-ApaLI 237
HuV19-BACK-ApaLI 238 HuV110-BACK-ApaLI 239 caClambda1-FOR 240
caClambda2-FOR 241 HuVk1B-BACK-ApaLI 242 HuVk2-BACK-ApaLI 243
HuVk3B-BACK-ApaLI 244 HuVk2/4-BACK-ApaLI 245 HuVk5-BACK-ApaLI
246 HuVk6-BACK-ApaLI 247 HuVk4B-BACK-ApaLI 248 caCHkapFOR-AscI 249
caCHkap2FOR-AscI 250 VH-1A1, 2B8, 2B9 251 VH-1C3, 1E3, 2A7 252
VH-1B3, 1G2, 2D8 253 VH-1G1, 2B7 254 X07448, IGHV1-2 255 1F2 VH 256
Humanized VH 1F2 257 Safe Variant VH 1F2 258 X92218, IGHV3-66 259
1E2 VH 260 Humanized VH 1E2 261 Safe Variant VH 1E2 262 Z73650,
IGLV8-61 263 1F2 VL 264 Humanized 1F2 VL 265 Safe Variant VL 1F2
266 1E2 VL 267 Humanized VL 1E2 268 Safe Variant VL 1E2 269
X92343|IGHV1-46*01 270 LpVH1-s6 (AM939701) 271 LpVH1-s2 (AM939697)
272 LpVH1-s3 (AM939698) 273 LpVH1-s4 (AM939699) 274 LpVH1-s5 Ps
(AM939700) 275 M99660|IGHV3-23*01 276 AM939712 277 AM939713 278
AM939730 279 AM939731 280 AM939744 281 AM939726 282 AM939727 283
AM939739 284 AM939740 285 AM939741 286 AM939742 287 AM939743 288
U29481|IGHV3-23*03 289 AM939716 290 AM939728 291 AM939738 292
AM939710 293 AM939748 294 AM939750 295 AM939751 296 AM939767 297
AM939768 298 AM939707 299 AM939708 300 AM939709 301 AM939732 302
AM939733 303 AM939717 304 AM939734 305 AM939735 306 AM939736 307
AM939737 308 L33851|IGHV3-74*01 309 AM939749 310 AM939724 311
AM939725 312 AM939745 313 AM939723 314 X92229|IGHV4-30-2*03 315
LpVH2-s7 (AM939704) 316 Z14238|IGHV4-30-4*01 317 LpVH2-s2
(AM939769) 318 LpVH2-s3 (AM939770) 319 LpVH2-s4 (AM939771) 320
LpVH2-s5 (AM939772) 321 LpVH2-s6 (AM939773) 322 LpVH2-s11 Ps
(AM939703) 323 LpVH2-s8 (AM939705) 324 LpVH2-s9 Ps (AM939706) 325
LpVH2-s10 (AM939702) 326 AJ879486|IGHV3-23*04 327 S-VH1 328 S-VH3
329 S-VH4 330 S-VH2 331 S-VH6 332 S-VH5 333 D86994|IGLV3-25*02 334
VL25-28 335 Z73672|IGLV5-37*01 336 VL2, 12, 15 337
Z73650|IGLV8-61*01 338 VL3, 5 339 VL17-24, 29-32 340 VL10 341 VL4,
6, 7, 8, 9, 13, 14 342 U41644|IGKV2D-29*02 343 KAPPA 33-36, 38, 39,
42, 4 344 KAPPA 41, 43, 44 345 KAPPA 40, 44 346 KAPPA 37, 46, 48
347 VH1a-BACK 348 VH5a-BACK 349 VH4a-BACK 350 VH4b-BACK 351
VH2b-BACK 352 VH1a-BACK-SfiI 353 VH5a-BACK-SfiI 354 VH4a-BACK-SfiI
355 VH4b-BACK-SfiI 356 VH2b-BACK-SfiI
Sequence CWU 1
1
392197PRTHomo sapiens 1Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Ile Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Thr Val Ser Ser Asn 20 25 30 Tyr Met Ser Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Val Ile Tyr Ser
Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys 50 55 60 Gly Arg Phe
Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu 65 70 75 80 Gln
Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala 85 90
95 Arg 297PRTCamelus dromedarius 2Glu Val Gln Leu Val Glu Ser Gly
Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys
Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Ser Trp
Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly
Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys 50 55 60
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Leu Tyr Leu 65
70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys Ala 85 90 95 Gly 395PRTCamelus dromedarius 3Gln Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Leu
Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 495PRTCamelus dromedarius 4Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Ala Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Leu
Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 595PRTCamelus dromedarius 5Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 695PRTCamelus dromedarius 6Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Leu
Tyr Leu 65 70 75 80 Gln Val Asn Ser Leu Lys Pro Glu Asp Thr Ala Val
Tyr Tyr Cys 85 90 95 795PRTCamelus dromedarius 7Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys His Met Leu
Tyr Leu 65 70 75 80 Gln Met His Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 895PRTCamelus dromedarius 8Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Asp
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys Ala Lys Asn Met Leu
Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 995PRTCamelus dromedarius 9Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Val Arg Lys Ala Gln Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys Ala Lys Asn Met Leu
Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 1095PRTCamelus dromedarius 10Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30
Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ser Asn Thr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp Ser Val
Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met
Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala
Met Tyr Tyr Cys 85 90 95 1195PRTCamelus dromedarius 11Glu Val Gln
Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Gly Tyr 20 25
30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Arg Gly Leu Glu Trp Val
35 40 45 Ser Gly Ile Tyr Ser Asp Gly Gly Thr Tyr Tyr Gly Asp Ser
Val Arg 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp Thr
Ala Met Cys Tyr Cys 85 90 95 1295PRTCamelus dromedarius 12Glu Val
Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20
25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp
Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly Asp
Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys Ala Lys
Asn Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp
Thr Ser Met Tyr Tyr Cys 85 90 95 1395PRTCamelus dromedarius 13Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Gly
Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys Ala
Lys Asn Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu
Asp Thr Ala Met Tyr Tyr Cys 85 90 95 1495PRTCamelus dromedarius
14Ala Val Gln Leu Val Glu Ser Gly Gly Gly Ser Val Gln Ala Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr
Gly Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys
Ala Lys Asn Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 1595PRTCamelus dromedarius
15Gln Val Gln Leu Val Glu Ser Gly Gly Gly Ser Val Gln Ala Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr
Gly Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys
Ala Lys Asn Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 1695PRTCamelus dromedarius
16Ala Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr
Gly Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys
Ala Lys Asn Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 1795PRTCamelus dromedarius
17Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Arg Leu
Glu Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr
Gly Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Lys
Ala Lys Asn Met Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 1895PRTCamelus dromedarius
18Gln Val Gln Leu Val Glu Ser Gly Gly Gly Ser Val Gln Ala Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Ala Ile Asn Ser Asp Gly Ser Thr Asn Tyr
Ala Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Val Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 1995PRTCamelus dromedarius
19Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Ala Ile Asn Ser Arg Gly Ser Thr His Tyr
Ala Asp Ser Met Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Val Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 2095PRTCamelus dromedarius
20Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr
Gly Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Gln Asp Asn
Ala Lys Asn Thr Val Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 2198PRTHomo sapiens 21Glu
Val Gln Leu Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys 2296PRTCamelus
dromedarius 22Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln
Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe
Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro
Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile Asn Ser Asp Gly
Ser Asn Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr
Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met
Asn Ser Leu Lys Ser Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95
2396PRTCamelus dromedarius 23Ala Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile
Tyr Thr Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Val Leu Tyr 65 70
75 80 Leu Lys Leu Ser Ser Leu Lys
Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 2496PRTCamelus
dromedarius 24Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln
Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe
Thr Phe Ser Ser Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro
Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Thr Ile Asn Ser Gly Gly
Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr
Ile Ser Arg Asp Asn Ala Lys Asn Met Leu Tyr 65 70 75 80 Leu Gln Met
Asn Ser Leu Lys Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95
2596PRTCamelus dromedarius 25Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met Tyr Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Thr Ile
Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 2696PRTCamelus dromedarius 26Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met
Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45
Ser Thr Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 2796PRTCamelus dromedarius 27Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30
Trp Met Tyr Trp Val Arg Gln Ala Pro Arg Lys Gly Leu Glu Trp Val 35
40 45 Ser Thr Ile Asn Ser Ala Gly Gly Ser Thr Tyr Tyr Ala Asp Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr
Ala Met Tyr Tyr Cys 85 90 95 2896PRTCamelus dromedarius 28Glu Val
Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20
25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp
Val 35 40 45 Ser Thr Ile Asn Ser Ala Gly Gly Ser Thr Tyr Tyr Ala
Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala
Lys Asn Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu
Asp Thr Ala Met Tyr Tyr Cys 85 90 95 2996PRTCamelus dromedarius
29Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr
Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp
Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys
Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 3096PRTCamelus
dromedarius 30Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln
Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe
Thr Phe Ser Ser Tyr 20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro
Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly
Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Gln Phe Thr
Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met
Asn Ser Leu Lys Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95
3196PRTCamelus dromedarius 31Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Ile Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile
Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr 65 70
75 80 Leu Gln Leu Asn Ser Leu Lys Pro Glu Asp Thr Ala Met Tyr Tyr
Cys 85 90 95 3296PRTCamelus dromedarius 32Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met
Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Leu Asn Ser Leu Lys Thr Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 3396PRTCamelus dromedarius 33Ala Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30
Ala Ile Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Val Tyr 65 70 75 80 Leu Gln Leu Asn Ser Leu Lys Thr Glu Asp Thr
Ala Met Tyr Tyr Cys 85 90 95 3496PRTCamelus dromedarius 34Glu Val
Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20
25 30 Trp Val Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp
Val 35 40 45 Ser Ser Ile Tyr Thr Gly Gly Gly Ser Thr Tyr Tyr Ala
Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Lys Asp Asn Ala
Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu
Asp Thr Ala Met Tyr Tyr Cys 85 90 95 3596PRTCamelus dromedarius
35Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser
Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu
Glu Trp Val 35 40 45 Ser Ser Ile Tyr Thr Gly Gly Gly Ser Thr Tyr
Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Lys Asp
Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys
Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 3696PRTCamelus
dromedarius 36Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln
Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe
Thr Phe Ser Ser Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro
Gly Lys Ala Leu Gln Trp Val 35 40 45 Ser Ser Ile Tyr Thr Gly Gly
Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Pro Leu Thr
Ile Ser Lys Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met
Asn Ser Leu Lys Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95
3796PRTCamelus dromedarius 37Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met Tyr Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile
Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Gln Asp Asn Ala Lys Asn Thr Arg Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Met Tyr Tyr
Cys 85 90 95 3896PRTCamelus dromedarius 38Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met
Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Ala Ile Tyr Thr Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Gln Asp Asn Ala Lys Asn Thr Val
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Thr Glu Asp Thr Ala Met
Tyr Tyr Cys 85 90 95 3996PRTCamelus dromedarius 39Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Ser Val Gln Ala Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30
Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Gln Asp Asn Ala Lys Asn
Met Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr
Ala Met Tyr Tyr Cys 85 90 95 4096PRTCamelus dromedarius 40Glu Val
Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Ser Ser Ser Tyr 20
25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp
Val 35 40 45 Ser Ser Ile Tyr Thr Gly Gly Gly Ser Thr Tyr Tyr Ala
Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Lys Asp Asn Ala
Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu
Asp Thr Ala Met Tyr Tyr Cys 85 90 95 4196PRTCamelus dromedarius
41Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1
5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Ala Phe Thr Tyr Ser Ser
Cys 20 25 30 Cys Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Phe
Glu Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr
Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Gln Asp
Asn Ala Lys Asn Thr Arg Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys
Pro Glu Asp Thr Ala Met Tyr Tyr Cys 85 90 95 4296PRTCamelus
dromedariusMOD_RES(26)..(26)Any amino acid 42Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Xaa Phe Thr Phe Ser Ser Tyr 20 25 30 Ala
Ile Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Gln Asp Asn Ala Lys Asn Thr
Arg Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala
Met Tyr Tyr Cys 85 90 95 4398PRTLama glama 43Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ser 20 25 30 Ala
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ser Ile Tyr Ser Tyr Ser Ser Asn Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Ser Arg Phe Thr Ile Ser Thr Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala
Val Tyr Tyr Cys 85 90 95 Ala Ala 4499PRTHomo sapiens 44Gln Ser Val
Leu Thr Gln Pro Pro Ser Val Ser Gly Ala Pro Gly Gln 1 5 10 15 Arg
Val Thr Ile Ser Cys Thr Gly Ser Ser Ser Asn Ile Gly Ala Gly 20 25
30 Tyr Asp Val His Trp Tyr Gln Gln Leu Pro Gly Thr Ala Pro Lys Leu
35 40 45 Leu Ile Tyr Gly Asn Ser Asn Arg Pro Ser Gly Val Pro Asp
Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Thr Ser Ala Ser Leu Ala
Ile Thr Gly Leu 65 70 75 80 Gln Ala Glu Asp Glu Ala Asp Tyr Tyr Cys
Gln Ser Tyr Asp Ser Ser 85 90 95 Leu Ser Gly 45112PRTCamelus
dromedarius 45Gln Ser Val Leu Thr Gln Pro Pro Ser Met Ser Gly Ser
Leu Gly Gln 1 5 10 15 Arg Val Thr Ile Ser Cys Thr Gly Ser Ser Ser
Asn Ile Gly Gly Gly 20 25 30 Ser Gly Val Gln Trp Phe Gln Gln Leu
Pro Gly Thr Ala Pro Lys Leu 35 40 45 Leu Ile Tyr Gly Asn Ser Asn
Arg Ala Ser Gly Ile Pro Asp Arg Phe 50 55 60 Ser Glu Ser Lys Ser
Gly Ser Ser Ala Ser Leu Thr Ile Thr Gly Leu 65 70 75 80 Gln Ala Asp
Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr Asp Asn Arg 85 90 95 Leu
Ser Gly Pro Val Phe Gly Gly Gly Thr Lys Leu Thr Val Leu Gly 100 105
110 4699PRTHomo sapiens 46Gln Ser Ala Leu Thr Gln Pro Pro Ser Val
Ser Gly Ser Pro Gly Gln 1 5 10 15 Ser Val Thr Ile Ser Cys Thr Gly
Thr Ser Ser Asp Val Gly Ser Tyr 20 25 30 Asn Arg Val Ser Trp Tyr
Gln Gln Pro Pro Gly Thr Ala Pro Lys Leu 35 40 45 Met Ile Tyr Glu
Val Ser Asn Arg Pro
Ser Gly Val Pro Asp Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn
Thr Ala Ser Leu Thr Ile Ser Gly Leu 65 70 75 80 Gln Ala Glu Asp Glu
Ala Asp Tyr Tyr Cys Ser Leu Tyr Thr Ser Ser 85 90 95 Ser Thr Phe
47130PRTCamelus dromedarius 47Met Ala Trp Ala Leu Leu Leu Leu Thr
Leu Leu Thr Gln Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu
Thr Gln Pro Ser Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val
Thr Ile Ser Cys Thr Gly Thr Ser Asn Asp Val 35 40 45 Gly Gly Tyr
Asn Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala 50 55 60 Pro
Lys Leu Leu Ile Tyr Gln Asp Ser Lys Arg Asn Ser Gly Ile Pro 65 70
75 80 Asp Arg Phe Ser Gly Ser Lys Ser Asp Asn Thr Ala Ser Met Thr
Ile 85 90 95 Ser Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys
Ala Ser Tyr 100 105 110 Arg Ser Thr Tyr His Ser Leu Phe Gly Gly Gly
Thr His Leu Thr Val 115 120 125 Leu Gly 130 48130PRTCamelus
dromedarius 48Met Ala Trp Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln
Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser
Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val Thr Ile Thr Cys
Thr Gly Thr Arg Asp Asp Val 35 40 45 Gly Gly Tyr Asn Tyr Val Ser
Trp Tyr Gln Gln Leu Pro Gly Thr Ala 50 55 60 Pro Lys Leu Leu Ile
Tyr Gln Ile Asn Lys Arg Leu Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe
Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Met Thr Ile 85 90 95 Ser
Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr 100 105
110 Arg Asp Leu Asn Thr Leu Val Phe Gly Gly Gly Thr His Leu Thr Val
115 120 125 Leu Gly 130 49130PRTCamelus dromedarius 49Met Ala Trp
Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln Gly Thr Gly 1 5 10 15 Ser
Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser Ser Val Ser Gly Thr 20 25
30 Pro Gly Gln Thr Val Thr Ile Ser Cys Thr Gly Thr Ser Asn Asp Val
35 40 45 Gly Gly Tyr Asn Tyr Val Ser Arg Tyr Gln Gln Leu Pro Gly
Thr Ala 50 55 60 Pro Lys Leu Leu Ile Tyr Gln Ile Asn Lys Arg Ala
Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe Ser Gly Ser Arg Ser Gly Asn
Thr Ala Ser Met Thr Ile 85 90 95 Ser Gly Leu Gln Ser Ala Asp Glu
Ala Asp Tyr Tyr Cys Ala Ser Tyr 100 105 110 Arg Ala Thr Asn Ser Ile
Val Phe Gly Gly Gly Thr His Leu Thr Val 115 120 125 Leu Gly 130
50130PRTCamelus dromedarius 50Met Ala Trp Ala Leu Leu Leu Leu Thr
Leu Leu Thr Gln Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu
Thr Gln Pro Ser Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val
Thr Ile Ser Cys Thr Gly Thr Ser Asn Asp Val 35 40 45 Gly Arg Tyr
Asn Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala 50 55 60 Pro
Lys Phe Leu Ile Tyr Gln Val Asn Lys Arg Ala Ser Gly Ile Pro 65 70
75 80 Asp Arg Phe Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Met Thr
Ile 85 90 95 Ser Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys
Ala Ser Leu 100 105 110 Arg Ser Ser Gly Asn Ala Val Phe Gly Gly Gly
Thr His Leu Thr Val 115 120 125 Leu Gly 130 51130PRTCamelus
dromedarius 51Met Ala Trp Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln
Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser
Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val Thr Ile Ser Cys
Thr Gly Thr Ser Asn Asp Val 35 40 45 Gly Arg Tyr Asn Tyr Val Ser
Trp Tyr Gln Gln Phe Pro Gly Thr Ala 50 55 60 Pro Lys Leu Leu Ile
Tyr Gln Val Asn Lys Arg Ala Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe
Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Met Thr Ile 85 90 95 Ser
Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr 100 105
110 Arg Asn Trp Ala Asn Leu Pro Phe Gly Gly Gly Thr His Leu Thr Val
115 120 125 Leu Gly 130 52130PRTCamelus dromedarius 52Met Ala Trp
Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln Gly Thr Gly 1 5 10 15 Ser
Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser Ser Val Ser Gly Thr 20 25
30 Pro Gly Gln Thr Val Thr Ile Ser Cys Thr Gly Thr Ser Asn Gly Val
35 40 45 Gly Gly Tyr Asn Tyr Val Ser Trp Tyr Arg Gln Leu Pro Gly
Thr Ala 50 55 60 Pro Lys Leu Leu Ile Tyr Gln Val Asn Lys Arg Ala
Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe Ser Gly Ser Lys Ser Gly Asn
Thr Ala Ser Met Thr Ile 85 90 95 Ser Gly Leu Gln Ser Ala Asp Glu
Ala Asp Tyr Tyr Cys Ala Ser Tyr 100 105 110 Arg Asn Gly Asn Asn Ala
Val Phe Gly Gly Gly Thr His Leu Thr Val 115 120 125 Leu Gly 130
53130PRTCamelus dromedarius 53Met Ala Trp Ala Leu Leu Leu Leu Thr
Leu Leu Thr Gln Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu
Thr Gln Pro Ser Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val
Thr Ile Ser Cys Thr Gly Thr Ser Asn Asp Val 35 40 45 Gly Gly Tyr
Asn Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala 50 55 60 Pro
Lys Leu Leu Ile Tyr Gln Val Asn Lys Arg Ala Ser Gly Ile Pro 65 70
75 80 Asp Arg Phe Ser Ser Ser Lys Ser Asp Asn Thr Ala Ser Met Thr
Ile 85 90 95 Ser Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys
Ala Ser Tyr 100 105 110 Arg Ser Arg Asp Asn Ala Val Phe Gly Gly Gly
Thr His Leu Thr Val 115 120 125 Leu Gly 130 54130PRTCamelus
dromedarius 54Met Ala Trp Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln
Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser
Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val Thr Ile Ser Cys
Thr Gly Thr Ser Asn Asp Val 35 40 45 Gly Arg Tyr Asn Tyr Val Ser
Trp Tyr Gln Gln Leu Pro Glu Thr Ala 50 55 60 Pro Lys Leu Leu Ile
Tyr Asp Val Asp Lys Arg Ala Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe
Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Met Thr Ile 85 90 95 Ser
Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr 100 105
110 Arg Ser Gly Asp Asn Ala Ala Phe Gly Gly Gly Thr Arg Leu Thr Val
115 120 125 Leu Gly 130 55111PRTCamelus dromedarius 55Gln Ala Val
Leu Thr Gln Pro Ser Ser Val Ser Gly Thr Pro Gly Gln 1 5 10 15 Thr
Val Thr Ile Ser Cys Thr Gly Thr Ser Asn Asp Val Gly Lys Tyr 20 25
30 Asn Tyr Val Ser Trp Tyr Gln Gln Phe Pro Gly Thr Ala Pro Lys Leu
35 40 45 Leu Ile Tyr Gln Val Asn Lys Arg Gly Ser Gly Ile Pro Asp
Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Met Thr
Ile Ser Gly Leu 65 70 75 80 Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys
Ala Ser Leu Ser Ser Gly 85 90 95 Asn Asn Ala Val Phe Gly Gly Gly
Thr His Leu Thr Val Leu Gly 100 105 110 56130PRTCamelus dromedarius
56Met Ala Trp Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln Gly Thr Gly 1
5 10 15 Ser Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser Ser Val Ser Gly
Thr 20 25 30 Pro Gly Gln Thr Val Thr Ile Ser Cys Thr Gly Thr Ser
Asn Asp Val 35 40 45 Gly Gly Tyr Asn Tyr Val Ser Trp His Gln Gln
Val Pro Gly Thr Ala 50 55 60 Pro Lys Leu Ile Leu Tyr Gln Val Lys
Glu Arg Pro Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe Ser Gly Ser Lys
Phe Gly Asn Thr Ala Ser Met Thr Ile 85 90 95 Ser Gly Leu Gln Ser
Ala Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr 100 105 110 Ser Ser Pro
Asn Asn Val Leu Phe Gly Gly Gly Thr His Leu Thr Val 115 120 125 Leu
Gly 130 57130PRTCamelus dromedarius 57Met Ala Trp Ala Leu Leu Leu
Leu Thr Leu Leu Thr Gln Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser
Ala Leu Ala Gln Pro Ser Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln
Thr Val Thr Ile Ser Cys Thr Gly Thr Ser Asp Asp Val 35 40 45 Gly
Ala Tyr Asn Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala 50 55
60 Pro Lys Leu Leu Ile Tyr Gln Val Asn Lys Arg Pro Ser Gly Ile Pro
65 70 75 80 Asp Arg Phe Ser Gly Ser Lys Ser Gly Asn Thr Val Ser Leu
Thr Ile 85 90 95 Ser Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Thr
Cys Ala Ser Tyr 100 105 110 Lys His Thr Tyr Asn Ala Val Phe Gly Gly
Gly Thr His Leu Thr Val 115 120 125 Leu Gly 130 58133PRTCamelus
dromedarius 58Met Ala Trp Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln
Gly Thr Gly 1 5 10 15 Ser Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser
Ser Val Ser Gly Thr 20 25 30 Pro Gly Gln Thr Val Thr Ile Ser Cys
Thr Gly Thr Arg Asp Asp Val 35 40 45 Gly Lys Tyr Asn Tyr Val Ser
Trp Tyr Gln Gln Leu Pro Gly Thr Ala 50 55 60 Pro Lys Leu Leu Ile
Tyr Gln Val Asn Lys Arg Ala Ser Gly Ile Pro 65 70 75 80 Asp Arg Phe
Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Met Thr Ile 85 90 95 Ser
Gly Leu Gln Ser Ala Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Val 100 105
110 Arg Asp Tyr Asp Asn Asn Glu Phe Val Val Phe Gly Gly Gly Thr His
115 120 125 Leu Thr Val Leu Gly 130 59130PRTCamelus dromedarius
59Met Ala Trp Ala Leu Leu Leu Leu Thr Leu Leu Thr Gln Gly Thr Gly 1
5 10 15 Ser Trp Ala Gln Ser Ala Leu Thr Gln Pro Ser Ser Val Ser Gly
Thr 20 25 30 Pro Gly Gln Thr Val Thr Ile Ser Cys Thr Gly Thr Ser
Asn Asp Val 35 40 45 Gly Arg Tyr Ala Tyr Val Ser Trp Tyr Gln His
Leu Pro Gly Thr Ala 50 55 60 Pro Lys Leu Leu Ile Tyr Gln Val Asn
Lys Arg Ala Ser Gly Thr Pro 65 70 75 80 Asp Arg Phe Ser Gly Ser Lys
Ser Gly Asn Thr Ala Ser Met Thr Thr 85 90 95 Ser Gly Leu Gln Ser
Ala Asp Glu Ala Asp Tyr Tyr Cys Ser Ala Tyr 100 105 110 Arg Ser Asn
Asp Gly Pro Val Phe Gly Gly Gly Thr His Leu Thr Val 115 120 125 Leu
Gly 130 6095PRTHomo sapiens 60Ser Tyr Glu Leu Thr Gln Pro Pro Ser
Val Ser Val Ser Pro Gly Gln 1 5 10 15 Thr Ala Ser Ile Thr Cys Ser
Gly Asp Lys Leu Gly Asp Lys Tyr Ala 20 25 30 Cys Trp Tyr Gln Gln
Lys Pro Gly Gln Ser Pro Val Leu Val Ile Tyr 35 40 45 Gln Asp Ser
Lys Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Gly Ser 50 55 60 Asn
Ser Gly Asn Thr Ala Thr Leu Thr Ile Ser Gly Thr Gln Ala Met 65 70
75 80 Asp Glu Ala Asp Tyr Tyr Cys Gln Ala Trp Asp Ser Ser Thr Ala
85 90 95 61108PRTCamelus dromedarius 61Gln Ser Val Leu Thr Gln Pro
Ser Ala Val Ser Val Ser Leu Gly Glu 1 5 10 15 Thr Ala Arg Ile Thr
Cys Gln Gly Gly Asn Phe Gly Ser Tyr Tyr Ala 20 25 30 Asn Trp Tyr
Gln Gln Lys Pro Gly Gln Ala Pro Val Leu Val Leu Tyr 35 40 45 Lys
Asp Ser Ala Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Gly Ser 50 55
60 Ser Ser Gly Gly Thr Ala Thr Leu Thr Ile Ser Gly Ala Gln Ala Glu
65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys Gln Ser Gly Ser Ser Ser Ala
Ser Ala 85 90 95 Val Phe Gly Gly Gly Thr His Leu Thr Val Leu Gly
100 105 62107PRTCamelus dromedarius 62Gln Ser Val Leu Thr Gln Pro
Ser Ala Val Ser Val Pro Leu Gly Glu 1 5 10 15 Thr Ala Arg Ile Thr
Cys Gln Gly Gly Asp Phe Gly Asp Tyr Tyr Val 20 25 30 Ser Trp Tyr
Gln Gln Lys Pro Gly Gln Ser Pro Val Leu Val Ile Tyr 35 40 45 Lys
Asp Thr Leu Arg Pro Ser Gly Ile Pro Glu Arg Phe Thr Gly Ser 50 55
60 Ser Ser Gly Gly Ala Ala Thr Leu Thr Ile Ser Gly Ala Gln Ala Glu
65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys Gln Ser Glu Thr Ser Ser Ala
Thr Val 85 90 95 Phe Gly Gly Gly Thr His Leu Thr Val Leu Gly 100
105 63108PRTCamelus dromedarius 63Thr Ala Leu Thr Gln Pro Ser Ala
Val Ser Val Ser Leu Gly Glu Thr 1 5 10 15 Ala Arg Ile Thr Cys Gln
Gly Gly Asn Phe Gly Ser Tyr Tyr Thr Ser 20 25 30 Trp Tyr Gln Gln
Lys Pro Glu Glu Ala Pro Val Val Val Ile Tyr Lys 35 40 45 Asp Thr
Glu Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Ala Ser Ser 50 55 60
Ser Gly Asp Thr Ala Thr Leu Thr Ile Ser Gly Ala Gln Ala Glu Asp 65
70 75 80 Glu Ala Asp Tyr Tyr Cys Gln Ser Gly Ser Ser Ser Ala Asn
Ala Pro 85 90 95 Val Phe Gly Gly Gly Thr Lys Leu Thr Val Leu Gly
100 105 64110PRTCamelus dromedarius 64Gln Ala Val Leu Ser Gln Pro
Ser Ala Val Ser Val Ser Leu Gly Glu 1 5 10 15 Thr Ala Arg Ile Thr
Cys Gln Gly Asp Asn Phe Gly Ser Tyr Tyr Phe 20 25 30 Ser Trp Tyr
Gln Gln Lys Pro Gly Gln Ala Pro Val Leu Val Ile Tyr 35 40 45 Arg
Asn Ser Asn Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Ala Ser 50 55
60 Ser Ser Gly Gly Thr Ala Thr Leu Thr Ile Ser Gly Ala Gln Ala Glu
65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys Gln Ser Ala Asp Ser
Ser Gly Arg Asn 85 90 95 Ala Arg Ala Phe Gly Gly Gly Thr Lys Leu
Thr Val Leu Gly 100 105 110 65111PRTCamelus dromedarius 65Gln Ser
Val Leu Thr Gln Pro Ser Ala Val Ser Val Ser Leu Gly Gln 1 5 10 15
Thr Ala Arg Ile Thr Cys Gln Gly Gly Ile Leu Gly Ser Lys Lys Thr 20
25 30 Asn Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Val Leu Val Ile
Tyr 35 40 45 Gly Asp Asp Ser Arg Pro Ser Gly Ile Pro Glu Arg Phe
Ser Gly Ser 50 55 60 Arg Ser Gly Gly Thr Ala Thr Leu Thr Ile Ser
Gly Ala Gln Ala Glu 65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys Gln Leu
Leu Asp Ser Thr Asp Ser Ser 85 90 95 Ser Tyr Trp Val Phe Gly Gly
Gly Thr His Leu Thr Val Leu Gly 100 105 110 6696PRTHomo sapiens
66Ser Tyr Glu Leu Thr Gln Pro His Ser Val Ser Val Ala Thr Ala Gln 1
5 10 15 Met Ala Arg Ile Thr Cys Gly Gly Asn Asn Ile Gly Ser Lys Ala
Val 20 25 30 His Trp Tyr Gln Gln Lys Pro Gly Gln Asp Pro Val Leu
Val Ile Tyr 35 40 45 Ser Asp Ser Asn Arg Pro Ser Gly Ile Pro Glu
Arg Phe Ser Gly Ser 50 55 60 Asn Pro Gly Asn Thr Thr Thr Leu Thr
Ile Ser Arg Ile Glu Ala Gly 65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys
Gln Val Trp Asp Ser Ser Ser Asp His 85 90 95 67110PRTCamelus
dromedarius 67Gln Ser Val Leu Thr Gln Pro Ser Thr Ala Ser Met Ser
Leu Gly Gln 1 5 10 15 Thr Ala Lys Ile Thr Cys Gln Gly Gly Ser Leu
Arg Asn Tyr Ala Ala 20 25 30 His Trp Tyr Gln Gln Lys Pro Gly Ala
Ala Pro Val Leu Val Ile Tyr 35 40 45 Asn Asp Asn Asn Arg Pro Ser
Gly Ile Pro Glu Arg Phe Ser Gly Ser 50 55 60 Lys Ser Gly Gly Thr
Ala Thr Leu Thr Ile Ser Arg Thr Lys Ala Glu 65 70 75 80 Asp Glu Ala
Asp Tyr Tyr Cys Leu Ser Arg Asp Met Ser Asp Ser Asn 85 90 95 Arg
Val Val Phe Gly Gly Gly Thr His Leu Thr Val Leu Gly 100 105 110
68101PRTHomo sapiens 68Asp Ile Val Met Thr Gln Thr Pro Leu Ser Leu
Pro Val Thr Pro Gly 1 5 10 15 Glu Pro Ala Ser Ile Ser Cys Arg Ser
Ser Gln Ser Leu Leu Asp Ser 20 25 30 Asp Asp Gly Asn Thr Tyr Leu
Asp Trp Tyr Leu Gln Lys Pro Gly Gln 35 40 45 Ser Pro Gln Leu Leu
Ile Tyr Thr Leu Ser Tyr Arg Ala Ser Gly Val 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Lys 65 70 75 80 Ile
Ser Arg Val Glu Ala Glu Asp Val Gly Val Tyr Tyr Cys Met Gln 85 90
95 Arg Ile Glu Phe Pro 100 69114PRTCamelus dromedarius 69Asp Ile
Val Met Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Val Gly 1 5 10 15
Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Phe Asp Thr 20
25 30 Ser Arg Gln Lys Ser Phe Leu Asn Trp His Arg Gln Arg Pro Gly
Gln 35 40 45 Ser Pro Arg Arg Leu Ile Tyr Tyr Ala Ser Thr Arg Gln
Ser Gly Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr
Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala
Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Phe Asn Val Gln Pro Ser
Phe Gly Ser Gly Thr Arg Leu Glu Ile 100 105 110 Lys Arg
70114PRTCamelus dromedarius 70Asp Ile Val Met Thr Gln Ser Pro Ser
Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys
Lys Ser Ser Gln Ser Val Phe Ser Ser 20 25 30 Ser Ser Gln Lys Ser
Leu Leu Asp Trp His Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg
Arg Leu Ile Tyr Tyr Ala Ser Ala Arg Ala Ser Gly Val 50 55 60 Pro
Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70
75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln
Gln 85 90 95 Tyr Ser Gly Ser Pro Pro Thr Phe Gly Ser Gly Thr Arg
Leu Glu Ile 100 105 110 Lys Arg 71114PRTCamelus dromedarius 71Asp
Ile Val Met Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Val Gly 1 5 10
15 Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln His Val Ile Ser Val
20 25 30 Ser Asn Gln Lys Ser Tyr Leu Asn Trp Tyr Gln Gln Arg Pro
Gly Gln 35 40 45 Ser Pro Arg Leu Leu Ile Tyr Tyr Ala Ser Thr Arg
Glu Ser Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr
Thr Asp Phe Ala Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp
Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Ser Thr Pro Tyr
Ser Phe Gly Ser Gly Thr Arg Leu Glu Ile 100 105 110 Lys Arg
72114PRTCamelus dromedarius 72Asp Ile Val Met Thr Gln Ser Pro Ser
Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys
Lys Ser Ser Gln Ser Val Leu Ser Ser 20 25 30 Ser Asn Gln Lys Ser
Tyr Leu Asn Trp Tyr Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg
Leu Leu Ile Tyr Tyr Ala Ser Thr Arg Glu Ser Gly Ile 50 55 60 Pro
Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70
75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala Val Phe Tyr Cys Gln
Gln 85 90 95 Ala Tyr Ser Ala Pro Tyr Ser Phe Gly Ser Gly Thr Arg
Leu Glu Ile 100 105 110 Lys Arg 73114PRTCamelus dromedarius 73Asp
Ile Val Met Thr Gln Ser Pro Ser Ser Val Leu Ala Ser Val Gly 1 5 10
15 Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Ser Ser
20 25 30 Ser Asn Gln Lys Ser Tyr Leu Asn Trp Tyr Gln Gln Arg Pro
Gly Gln 35 40 45 Ser Pro Arg Leu Leu Ile Thr Tyr Ala Ser Thr Arg
Glu Ser Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr
Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp
Ala Val Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Ser Lys Pro Tyr
Asn Phe Gly Asn Gly Thr Arg Leu Glu Ile 100 105 110 Lys Arg
74114PRTCamelus dromedarius 74Asp Ile Val Met Thr Gln Ser Pro Thr
Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys
Lys Ser Ser Gln Ser Val Phe Ala Ser 20 25 30 Ser Ser Gln Lys Ser
Gln Leu Ala Trp His Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg
Arg Leu Ile Tyr Tyr Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro
Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70
75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln
His 85 90 95 Leu Tyr Ser Ala Pro Tyr Ser Phe Gly Ser Gly Thr Arg
Leu Glu Ile 100 105 110 Lys Arg 75114PRTCamelus dromedarius 75Asp
Ile Val Met Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Val Gly 1 5 10
15 Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Asn Leu Val Ser Asp
20 25 30 Ser Asn Gln Arg Ser Leu Leu Ala Trp His Gln Gln Arg Pro
Gly Gln 35 40 45 Ser Pro Arg Lys Leu Ile Tyr Tyr Ala Ser Thr Arg
Thr Ser Gly Thr 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr
Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp
Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Gly Lys Lys Asp Pro Leu
Ser Phe Gly Ser Gly Thr Arg Leu Glu Ile 100 105 110 Lys Arg
7617PRTHomo sapiens 76Ala Glu Tyr Phe Gln His Trp Gly Gln Gly Thr
Leu Val Thr Val Ser 1 5 10 15 Ser 7717PRTHomo sapiens 77Tyr Trp Tyr
Phe Asp Leu Trp Gly Arg Gly Thr Leu Val Thr Val Ser 1 5 10 15 Ser
7815PRTHomo sapiens 78Ala Phe Asp Val Trp Gly Gln Gly Thr Met Val
Thr Val Ser Ser 1 5 10 15 7915PRTHomo sapiens 79Tyr Phe Asp Tyr Trp
Gly Gln Gly Thr Leu Val Thr Val Ser Ser 1 5 10 15 8016PRTHomo
sapiens 80Asn Trp Phe Asp Ser Trp Gly Gln Gly Thr Leu Val Thr Val
Ser Ser 1 5 10 15 8120PRTHomo sapiens 81Tyr Tyr Tyr Tyr Tyr Gly Met
Asp Val Trp Gly Gln Gly Thr Thr Val 1 5 10 15 Thr Val Ser Ser 20
8218PRTLama glama 82Gly Tyr Arg Tyr Leu Glu Val Trp Gly Gln Gly Thr
Leu Val Thr Val 1 5 10 15 Ser Ser 8316PRTLama glama 83Asn Ala Leu
Asp Ala Trp Gly Gln Gly Thr Leu Val Thr Val Ser Ser 1 5 10 15
8415PRTLama glama 84Glu Tyr Asp Tyr Trp Gly Gln Gly Thr Gln Val Thr
Val Ser Ser 1 5 10 15 8515PRTLama glama 85Pro Gln Phe Glu Tyr Trp
Gly Gln Gly Thr Leu Val Thr Val Ser 1 5 10 15 8614PRTLama glama
86Asp Phe Gly Ser Trp Gly Gln Gly Thr Leu Val Thr Val Ser 1 5 10
8712PRTHomo sapiens 87Tyr Val Phe Gly Thr Gly Thr Lys Val Thr Val
Leu 1 5 10 8812PRTHomo sapiens 88Val Val Phe Gly Gly Gly Thr Lys
Leu Thr Val Leu 1 5 10 8912PRTHomo sapiens 89Val Val Phe Gly Gly
Gly Thr Lys Leu Thr Val Leu 1 5 10 9012PRTHomo sapiens 90Phe Val
Phe Gly Gly Gly Thr Gln Leu Ile Ile Leu 1 5 10 9112PRTHomo sapiens
91Trp Val Phe Gly Glu Gly Thr Glu Leu Thr Val Leu 1 5 10
9212PRTHomo sapiens 92Asn Val Phe Gly Ser Gly Thr Lys Val Thr Val
Leu 1 5 10 9312PRTHomo sapiens 93Ala Val Phe Gly Gly Gly Thr Gln
Leu Thr Val Leu 1 5 10 9411PRTCamelus dromedarius 94Phe Gly Gly Gly
Thr His Leu Thr Val Leu Gly 1 5 10 9511PRTCamelus dromedarius 95Phe
Gly Gly Gly Thr Lys Leu Thr Val Leu Gly 1 5 10 9611PRTCamelus
dromedarius 96Phe Gly Gly Gly Thr Arg Leu Thr Val Leu Gly 1 5 10
9712PRTHomo sapiens 97Trp Thr Phe Gly Gln Gly Thr Lys Val Glu Ile
Lys 1 5 10 9812PRTHomo sapiens 98Tyr Thr Phe Gly Gln Gly Thr Lys
Leu Glu Ile Lys 1 5 10 9912PRTHomo sapiens 99Phe Thr Phe Gly Pro
Gly Thr Lys Val Asp Ile Lys 1 5 10 10012PRTHomo sapiens 100Leu Thr
Phe Gly Gly Gly Thr Lys Val Glu Ile Lys 1 5 10 10112PRTHomo sapiens
101Ile Thr Phe Gly Gln Gly Thr Arg Leu Glu Ile Lys 1 5 10
10211PRTCamelus dromedarius 102Phe Gly Ser Gly Thr Arg Leu Glu Ile
Lys Arg 1 5 10 10311PRTCamelus dromedarius 103Phe Gly Asn Gly Thr
Arg Leu Glu Ile Lys Arg 1 5 10 104109PRTHomo sapiens 104Glu Val Gln
Leu Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25
30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val
35 40 45 Ser Ala Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr Ala Asp
Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys
Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp
Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Trp Gly Gln Gly Thr Leu
Val Thr Val Ser Ser 100 105 105122PRTLama glama 105Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Ala Phe Ser Ser Tyr 20 25 30
Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ala Ile Asn Ser Gly Gly Ile Ser Thr Tyr Asn Ala Asp Ser
Met 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr
Ala Val Tyr Tyr Cys 85 90 95 Asn Ala Asp Thr Trp Tyr Cys Asp Gln
Leu Asp Ser Ser Asp Tyr Trp 100 105 110 Gly Gln Gly Thr Gln Val Thr
Val Ser Ser 115 120 106118PRTLama glama 106Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Arg 1 5 10 15 Ser Leu Arg Val
Ser Tyr Ala Ala Ser Gly Phe Thr Phe Ser Ser His 20 25 30 Tyr Met
Ser Trp Val Arg Gln Asp Pro Glu Lys Gly Leu Glu Trp Val 35 40 45
Ser Glu Ile Ala Thr Gly Gly Thr Ile Thr Ser Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Asn Asn Met Leu
Phe 65 70 75 80 Leu Gln Met Asn Asn Leu Lys Pro Glu Asp Thr Ala Leu
Tyr Tyr Cys 85 90 95 Val Arg Arg Gly Arg Ala Ile Ala Phe Asp Val
Trp Gly Gln Gly Thr 100 105 110 Leu Val Thr Val Ser Ser 115
107122PRTLama glama 107Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Leu Thr Phe Asp Asp Tyr 20 25 30 Ala Met Ser Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Thr Ile Tyr Thr
His Ser Arg Asn Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Ser Asp Asp Thr Ala Leu Tyr Tyr Cys 85 90
95 Ala Lys Glu Trp Val Gly Ser Val Val Glu Gly Arg Tyr Arg Gly Trp
100 105 110 Gly Gln Gly Thr Leu Val Thr Val Ser Ser 115 120
108122PRTLama glamaMOD_RES(36)..(36)Any amino acid 108Glu Val Gln
Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25
30 Val Met Ser Xaa Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val
35 40 45 Ser Gly Val Asn Thr Asp Gly Arg Ser Ile Thr Tyr Ala Asp
Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys
Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Thr Lys Ile Cys Thr Val Ile Thr Gly Arg Pro Gly Tyr
Asp Tyr Trp 100 105 110 Gly Gln Gly Thr Leu Val Thr Val Ser Ser 115
120 109117PRTLama glama 109Glu Val Gln Leu Val Glu Ser Gly Gly Gly
Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Val Ser Cys Ala Ala
Ser Gly Phe Thr Phe Ser Ser Leu 20 25 30 Tyr Met Ser Trp Val Arg
Gln Val Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Thr Ile His
Thr Ala Ser Gly Ser Thr Phe Tyr Ala Asp Ser Val 50 55 60 Gln Gly
Arg Phe Leu Val Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80
Leu Gln Met Asp Ser Leu Lys Pro Glu Asp Thr Ala Arg Tyr Tyr Cys 85
90 95 Ala Ser Ala Ile Leu Gly Trp Tyr Asp Tyr Trp Gly Gln Gly Thr
Leu 100 105 110 Val Thr Val Ser Ser 115 110117PRTLama glama 110Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Gly Ile Tyr Ser Asp Gly Thr Thr Thr Tyr Asp
Gly Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Met Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Asp Ala Ala Val Tyr Tyr Cys 85 90 95 Ala Ser Ala Ile Arg Gly
Trp Tyr Asp Tyr Trp Gly Gln Gly Thr Leu 100 105 110 Val Thr Val Ser
Ser 115 11198PRTHomo sapiens 111Gln Ser Val Leu Thr Gln Pro Pro Ser
Val Ser Glu Ala Pro Arg Gln 1 5 10 15 Arg Val Thr Ile Ser Cys Ser
Gly Ser Ser Ser Asn Ile Gly Asn Asn 20 25 30 Ala Val Asn Trp Tyr
Gln Gln Leu Pro Gly Lys Ala Pro Lys Leu Leu 35 40 45 Ile Tyr Tyr
Asp Asp Leu Leu Pro Ser Gly Val Ser Asp Arg Phe Ser 50 55 60 Gly
Ser Lys Ser Gly Thr Ser Ala Ser Leu Ala Ile Ser Gly Leu Gln 65 70
75 80 Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Ala Trp Asp Asp Ser
Leu 85 90 95 Asn Gly 112110PRTLama glama 112Gln Pro Val Leu Thr Gln
Pro Pro Ser Val Ser Gly Ser Pro Gly Gln 1 5 10 15 Lys Phe Thr Ile
Ser Cys Thr Gly Ser Ser Ser Asn Ile Gly Asn Asn 20 25 30 Tyr Val
Asn Trp Tyr Gln His Leu Pro Gly Thr Ala Pro Arg Leu Leu 35 40 45
Ile Tyr Ser Asn Asn Asn Arg Ala Ser Gly Val Pro Asp Arg Phe Ser 50
55 60 Gly Ser Lys Ser Gly Ser Ser Ala Ser Leu Thr Ile Thr Gly Leu
Gln 65 70 75 80 Ala Glu Asp Glu Ala Glu Tyr Tyr Cys Ser Ser Trp Asp
Asp Ser Leu 85 90 95 Ser Gly Thr Val Phe Gly Gly Gly Thr His Leu
Thr Val Leu 100 105 110 113111PRTLama glama 113Gln Ser Ala Leu Thr
Gln Pro Pro Ser Val Ser Gly Ser Pro Gly Gln 1 5 10 15 Lys Phe Thr
Ile Ser Cys Thr Gly Ser Ser Ser Asn Ile Gly Asp Asn 20 25 30 Tyr
Val Asn Trp Tyr Gln His Leu Pro Gly Thr Ala Pro Lys Leu Leu 35 40
45 Ile Tyr Ser Asn Ser Asn Arg Ala Ser Gly Val Pro Asp Arg Phe Ser
50 55 60 Gly Ser Lys Ser Gly Ser Ser Ala Ser Leu Thr Ile Thr Gly
Leu Gln 65 70 75 80 Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Ser Ser Trp
Asp Asp Ser Leu 85 90 95 Ser Gly His Pro Val Phe Gly Gly Gly Thr
Lys Leu Thr Val Leu 100 105 110 114110PRTLama glama 114Asn Phe Met
Leu Thr Gln Pro Pro Ser Val Ser Gly Ser Pro Gly Gln 1 5 10 15 Lys
Phe Thr Ile Ser Cys Thr Gly Ser Ser Ser Asp Ile Gly Asn Asn 20 25
30 Tyr Val Asn Trp Tyr Gln His Leu Pro Gly Thr Ala Pro Lys Leu Leu
35 40 45 Ile Tyr Ser Thr Asp Lys Arg Ala Ser Gly Val Pro Asp Arg
Phe Ser 50 55 60 Gly Ser Lys Ser Gly Ser Ser Ala Ser Leu Thr Ile
Thr Gly Leu Gln 65 70 75 80 Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Ser
Ser Trp Asp Asp Asn Leu 85 90 95 Gly Thr Tyr Val Phe Gly Gly Gly
Thr Ser Val Thr Val Leu 100 105 110 115110PRTLama glama 115Asn Phe
Met Leu Thr Gln Pro Pro Ser Val Ser Gly Ser Pro Gly Gln 1 5 10 15
Lys Phe Thr Ile Ser Cys Thr Gly Ser Ser Ser Asn Ile Gly Glu Asn 20
25 30 Phe Val Asn Trp Tyr Gln His Leu Pro Gly Thr Ala Pro Lys Leu
Leu 35 40 45 Ile Tyr Ser Thr Asp Lys Arg Ala Ser Gly Val Pro Asp
Arg Phe Ser 50 55 60 Gly Ser Lys Ser Gly Ser Ser Ala Ser Leu Thr
Ile Thr Gly Leu Gln 65 70 75 80 Ala Glu Asp Glu Ala Asp Tyr Tyr Cys
Ser Ser Trp Asp Asp Asn Leu 85 90 95 Gly Thr Tyr Val Phe Gly Gly
Gly Thr Ser Val Thr Val Leu 100 105 110 116111PRTLama glama 116Asn
Phe Met Leu Thr Gln Pro Pro Ser Val Ser Gly Ser Pro Gly Gln 1 5 10
15 Lys Phe Thr Ile Ser Cys Thr Gly Ser Asn Asn Asn Ile Gly Asn Asn
20 25 30 Tyr Val Asn Trp Tyr Gln His Leu Pro Gly Thr Ala Pro Lys
Leu Leu 35 40 45 Ile Tyr Ser Asn Asn Tyr Arg Ala Ser Gly Val Pro
Asp Arg Phe Ser 50 55 60 Gly Ser Lys Ser Gly Ser Ser Ala Ser Leu
Thr Ile Thr Gly Leu Gln 65 70 75 80 Ala Glu Asp Glu Ala Asp Tyr Tyr
Cys Ser Ser Trp Asp Glu Ser Leu 85 90 95 Ser Gly Arg Tyr Val Phe
Gly Gly Gly Thr Lys Leu Ala Val Leu 100 105 110 11799PRTHomo
sapiens 117Gln Ser Val Leu Thr Gln Pro Pro Ser Val Ser Gly Ala Pro
Gly Gln 1 5 10 15 Arg Val Thr Ile Ser Cys Thr Gly Ser Ser Ser Asn
Ile Gly Ala Gly 20 25 30 Tyr Asp Val His Trp Tyr Gln Gln Leu Pro
Gly Thr Ala Pro Lys Leu 35 40 45 Leu Ile Tyr Gly Asn Ser Asn Arg
Pro Ser Gly Val Pro Asp Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly
Thr Ser Ala Ser Leu Ala Ile Thr Gly Leu 65 70 75 80 Gln Ala Glu Asp
Glu Ala Asp Tyr Tyr Cys Gln Ser Tyr Asp Ser Ser 85 90 95 Leu Ser
Gly 118110PRTLama glama 118Gln Ser Ala Leu Thr Gln Pro Pro Ser Val
Ser Gly Thr Leu Gly Lys 1 5 10 15 Thr Val Thr Ile Ser Cys Ala Gly
Thr Ser Asn Asp Ile Gly Arg Tyr 20 25 30 Asn Tyr Val Ala Trp Tyr
Gln Gln Leu Pro Gly Thr Ala Pro Lys Leu 35 40 45 Leu Ile Tyr Ala
Val Ser Tyr Arg Ala Ser Gly Ile Pro Asp Arg Phe 50 55 60 Ser Gly
Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile Ser Gly Leu 65 70 75 80
Gln Ser Gly Asp Glu Ala Asp Tyr Tyr Cys Val Ser Tyr Arg Ser Gly 85
90 95 Gly Thr Asn Val Phe Gly Gly Gly Thr His Leu Thr Val Leu 100
105 110 119112PRTLama glama 119Gln Ser Ala Leu Thr Gln Pro Pro Ser
Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Thr Leu Thr Ile Ser Cys Ala
Gly Thr Ser Ser Asp Val Gly Tyr Gly 20 25 30 Asn Tyr Val Ser Trp
Tyr Gln Gln Leu Pro Gly Thr Ala Pro Lys Leu 35 40 45 Leu Ile Tyr
Arg Val Ser Tyr Arg Pro Ser Gly Ile Pro Asp Arg Phe 50 55 60 Ser
Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile Ser Gly Leu 65 70
75 80 Gln Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Thr Ser Tyr Thr Tyr
Lys 85 90 95 Gly Gly Gly Thr Ala Val Phe Gly Gly Gly Thr His Leu
Thr Val Leu 100 105 110 120110PRTLama glama 120Gln Ser Ala Leu Thr
Gln Pro Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Thr Val Thr
Ile Ser Cys Ala Gly Thr Arg Thr Asp Val Gly Tyr Gly 20 25 30 Asp
Tyr Val Ser Trp Tyr Gln His Val Pro Asn Thr Ala Pro Arg Leu 35 40
45 Leu Ile Tyr Ala Val Ser Ala Arg Ala Ser Gly Ile Pro Ser Arg Phe
50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile Ser
Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Ser
Tyr Arg Asp Gly 85 90 95 Asn Tyr Ala Val Phe Gly Gly Gly Thr His
Leu Thr Val Leu 100 105 110 121110PRTLama glama 121Gln Ala Val Leu
Thr Gln Pro Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Ala Val
Thr Ile Ser Cys Ala Gly Thr Gly Ser Asp Val Gly Tyr Gly 20 25 30
Asp Tyr Val Ser Trp Tyr Gln Gln Leu Pro Asp Thr Ala Pro Lys Leu 35
40 45 Leu Val Tyr Ala Val Asn Thr Arg Ala Ser Gly Ile Pro Asp Arg
Phe 50 55 60 Ser Gly Ser Arg Ser Gly Asn Thr Ala Ser Leu Thr Ile
Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Gly Asp Tyr Tyr Cys Ala
Ser Tyr Arg Ser Tyr 85 90 95 Asn Asn Tyr Val Phe Gly Gly Gly Thr
His Leu Thr Val Leu 100 105 110 122110PRTLama glama 122Asn Phe Met
Leu Thr Gln Pro Pro Ser Val Ser Gly Ser Pro Gly Lys 1 5 10 15 Thr
Val Thr Ile Ser Cys Ala Gly Thr Ser Ser Asp Val Gly Tyr Gly 20 25
30 Asn Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Met Ala Pro Lys Leu
35 40 45 Leu Leu Tyr Asn Ile Asn Lys Arg Ala Ser Gly Ile Ala Asp
Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr
Ile Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala Val Tyr Tyr Cys
Ala Ser Tyr Arg Ser Gly 85 90 95 Asn Asn Tyr Val Phe Gly Gly Gly
Thr Glu Leu Thr Val Leu 100 105 110 123110PRTLama glama 123Gln Ser
Ala Leu Thr Gln Pro Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15
Thr Val Thr Ile Ser Cys Ala Gly Thr Asn Ser Asp Ile Gly Asp Tyr 20
25 30 Asn Phe Val Ser Trp Tyr Gln His Leu Pro Gly Met Ala Pro Lys
Leu 35 40 45 Leu Ile Tyr Asp Val Asn Lys Arg Ala Ser Gly Ile Ala
Asp Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu
Thr Ile Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala Asp Tyr Tyr
Cys Ala Ser Tyr Arg Ser Ser 85 90 95 Asn Asn Tyr Val Phe Gly Gly
Gly Thr Lys Leu Thr Val Leu 100 105 110 124110PRTLama glama 124Gln
Ala Gly Leu Thr Gln Pro Pro Ser Val Ser Gly Ser Leu Gly Lys 1 5 10
15 Thr Ile Thr Ile Ser Cys Ala Gly Thr Arg Asn Asp Ile Gly Gly His
20 25 30 Gly Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala Pro
Lys Leu 35 40 45 Leu Ile Tyr Lys Ile Asn Thr Arg Ala Ser Gly Ile
Pro Asp Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser
Leu Thr Ile Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala Asp Tyr
Phe Cys Val Ala Asp Ile Asn Gly 85 90 95 Asp Thr Asn Val Phe Gly
Gly Gly Thr His Leu Thr Val Leu 100 105 110 125110PRTLama glama
125Ser Ser Glu Leu Thr Gln Pro Pro Ser Val Ser Gly Thr Leu Gly Lys
1 5 10 15 Thr Val Thr Ile Ser Cys Ala Gly Thr Ser Asn Asp Ile Gly
Ala His 20 25 30 Asn Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr
Ala Pro Lys Leu 35 40 45 Leu Ile Asn Lys Val Ser Thr Arg Ala Ser
Gly Ile Pro Asp Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr
Ala Ser Leu Thr Ile Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala
Asp Tyr Tyr Cys Ala Ala Tyr Arg Thr Gly 85 90 95 Asp Ala Arg Ile
Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105 110 126110PRTLama
glama 126Gln Pro Val Leu Thr Gln Pro Pro Ser Val Ser Gly Ser Pro
Gly Lys 1 5 10 15 Thr Val Thr Ile Ser Cys Ala Gly Thr Ser Ser Asp
Ile Gly Tyr Gly 20 25 30 Asn Tyr Val Ser Trp Tyr Gln Leu Leu Pro
Gly Thr Ala Pro Lys Leu 35 40 45 Leu Ile Tyr Asp Val Asn Lys Arg
Pro Ser Gly Ile Pro Asp Arg Phe 50 55 60 Ser Gly Ser Lys Ser Gly
Asn Gln Ala Tyr Leu Thr Ile Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp
Glu Ala Asp Tyr Tyr Cys Val Ser Tyr Arg Glu Pro 85 90 95 Asn Asn
Phe Val Ser Gly Gly Gly Thr His Leu Val Val Leu 100 105 110
127110PRTLama glama 127Gln Ser Ala Leu Thr Gln Pro Pro Ser Val Ser
Gly Ser Leu Gly Lys 1 5 10 15 Thr Val Thr Ile Ser Cys Ala Gly Thr
Ile Gly Asp Ile Gly Ala Gly 20 25 30 Asn Tyr Val Ser Trp Tyr Arg
Gln Thr Pro Gly Thr Ala Pro Lys Leu 35 40 45 Leu Leu Tyr Glu Val
Asn Lys Arg Thr Ser Gly Ile Pro Asp Arg Phe 50 55 60 Ala Gly Ser
Arg Ser Gly Asn Thr Ala Ser Leu Ile Ile Ser Gly Leu 65 70 75 80 Gln
Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr Arg Ile Gly 85 90
95 Ser Arg Gly Val Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105
110 128110PRTLama glama 128Gln Pro Val Leu Thr Gln Pro Pro Ser Val
Ser Gly Ser Leu Gly Lys 1 5 10 15 Thr Val Thr Ile Ser Cys Ala Gly
Thr Trp Ser Asp Ile Gly Gly Tyr 20 25 30 Asn Tyr Ile Ser Trp Tyr
Arg Gln Leu Pro Gly Thr Ala Pro Arg Leu 35 40 45 Leu Ile Tyr Glu
Val Asp Lys Arg Ala Pro Gly Ile Pro Asp Arg Phe 50 55 60 Ser Gly
Ser Lys Ser Gly Thr Thr Ala Ser Leu Val Ile Ser Gly Leu 65 70 75 80
Gln Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr Lys Ser Ser 85
90 95 Glu Asn Ala Val Phe Gly Gly Gly Thr His Leu Thr Val Val 100
105 110
12999PRTHomo sapiens 129Gln Ser Ala Leu Thr Gln Pro Pro Ser Ala Ser
Gly Ser Pro Gly Gln 1 5 10 15 Ser Val Thr Ile Ser Cys Thr Gly Thr
Ser Ser Asp Val Gly Ser Tyr 20 25 30 Asn Tyr Val Ser Trp Tyr Gln
Gln His Pro Gly Lys Ala Pro Lys Leu 35 40 45 Met Ile Tyr Glu Val
Ser Lys Arg Pro Ser Gly Val Pro Asp Arg Phe 50 55 60 Ser Gly Ser
Lys Ser Gly Asn Thr Ala Ser Leu Thr Val Ser Gly Leu 65 70 75 80 Gln
Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Ser Ser Tyr Ala Gly Ser 85 90
95 Asn Asn Phe 130110PRTLama glama 130Gln Ser Val Leu Thr Gln Pro
Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Thr Leu Thr Ile Ser
Cys Ala Gly Thr Ser Ser Asp Val Gly Tyr Gly 20 25 30 Asn Tyr Val
Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala Pro Lys Leu 35 40 45 Leu
Ile Tyr Arg Val Ser Thr Arg Ala Ser Gly Ile Pro Asp Arg Phe 50 55
60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile Ser Gly Leu
65 70 75 80 Gln Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Ser Ser Tyr Arg
Ser Thr 85 90 95 Gly Thr Ala Val Phe Gly Gly Gly Thr His Leu Ser
Val Leu 100 105 110 131110PRTLama glama 131Gln Ser Val Leu Thr Gln
Pro Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Thr Val Thr Ile
Ser Cys Ala Gly Thr Ser Ser Asp Val Gly Tyr Gly 20 25 30 Asn Tyr
Val Ser Trp Tyr Gln Lys Leu Pro Gly Thr Ala Pro Lys Leu 35 40 45
Leu Ile Tyr Ala Val Ser Tyr Arg Ala Ser Gly Ile Pro Asp Arg Phe 50
55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile Ser Gly
Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Ser Tyr
Arg Asp Ser 85 90 95 Asn Asn Ala Val Phe Gly Gly Gly Thr His Leu
Thr Ala Leu 100 105 110 132110PRTLama glama 132Leu Pro Val Leu Thr
Gln Pro Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Ser Leu Thr
Ile Ser Cys Ala Gly Thr Ser Ser Asp Val Gly Asn Gly 20 25 30 Asn
Tyr Val Ser Trp Tyr Gln Gln Leu Pro Gly Thr Ala Pro Lys Leu 35 40
45 Leu Ile Tyr Arg Val Thr Ser Arg Ala Ser Gly Val Pro Asp Arg Phe
50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile Ser
Gly Leu 65 70 75 80 Gln Pro Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Ser
Tyr Lys Arg Gly 85 90 95 Gly Thr Ser Val Phe Gly Gly Gly Thr His
Leu Thr Val Leu 100 105 110 133110PRTLama glama 133Gln Pro Val Leu
Thr Gln Pro Pro Ser Val Ser Gly Thr Leu Gly Lys 1 5 10 15 Thr Val
Thr Ile Ser Cys Ala Gly Thr Ser Thr Asp Ile Gly Gly Tyr 20 25 30
Asn Tyr Val Ser Trp Tyr Gln Gln Val Pro Gly Thr Ala Pro Lys Leu 35
40 45 Leu Ile Tyr Glu Val Asn Lys Arg Pro Ser Gly Ile Pro Asp Arg
Phe 50 55 60 Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser Leu Thr Ile
Ser Gly Leu 65 70 75 80 Gln Ser Glu Asp Glu Ala Asp Tyr Tyr Cys Ala
Ser Tyr Arg Ser Ser 85 90 95 Asn Asn Val Val Phe Gly Gly Gly Thr
His Leu Thr Val Leu 100 105 110 13495PRTHomo sapiens 134Ser Tyr Glu
Leu Thr Gln Pro Leu Ser Val Ser Val Ala Leu Gly Gln 1 5 10 15 Thr
Ala Arg Ile Thr Cys Gly Gly Asn Asn Ile Gly Ser Lys Asn Val 20 25
30 His Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Val Leu Val Ile Tyr
35 40 45 Arg Asp Ser Asn Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser
Gly Ser 50 55 60 Asn Ser Gly Asn Thr Ala Thr Leu Thr Ile Ser Arg
Ala Gln Ala Gly 65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys Gln Val Trp
Asp Ser Ser Thr Ala 85 90 95 135107PRTLama glama 135Leu Pro Val Leu
Thr Gln Pro Ser Ala Leu Ser Val Thr Leu Gly Gln 1 5 10 15 Thr Ala
Lys Ile Thr Cys Gln Gly Gly Ser Leu Gly Ser Ser Tyr Ala 20 25 30
His Trp Tyr Gln Gln Lys Pro Gly Pro Ala Pro Val Leu Val Ile Tyr 35
40 45 Asp Asp Ala Asn Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Gly
Ser 50 55 60 Arg Ser Gly Gly Thr Ala Thr Leu Thr Ile Ser Gly Ala
Gln Ala Glu 65 70 75 80 Asp Glu Gly Asp Tyr Tyr Cys Gln Ser Val Asp
Asn Ser Gly Asn Val 85 90 95 Val Phe Gly Gly Gly Thr His Leu Thr
Val Leu 100 105 136107PRTLama glama 136Gln Ala Val Leu Thr Gln Pro
Ser Ala Val Ser Val Ser Leu Gly Gln 1 5 10 15 Thr Ala Arg Leu Thr
Cys Gln Gly Asp Asn Val Glu Thr Ala Gly Thr 20 25 30 Ser Trp Tyr
Arg Gln Lys Pro Gly Gln Ala Pro Ser Leu Ile Ile Tyr 35 40 45 Gly
Asp Ser Ser Arg Pro Ser Glu Ile Ser Glu Arg Phe Ser Ala Ser 50 55
60 Thr Ser Gly Asn Thr Ala Thr Leu Thr Ile Thr Gly Ala Gln Ala Glu
65 70 75 80 Asp Glu Ala Asp Tyr Tyr Cys Leu Ser Ala Asp Ser Asp Leu
Asp Ser 85 90 95 Val Phe Gly Gly Gly Thr Leu Leu Thr Val Leu 100
105 137108PRTLama glama 137Gln Ala Gly Leu Thr Gln Pro Ser Ala Val
Ser Val Ser Leu Gly Gln 1 5 10 15 Thr Ala Arg Ile Thr Cys Arg Gly
Asp Ser Leu Glu Arg Tyr Gly Ala 20 25 30 Asn Trp Tyr Gln Gln Lys
Pro Gly Gln Ala Arg Val Gln Val Ile Tyr 35 40 45 Gly Asp Asp Ile
Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Gly Ser 50 55 60 Arg Leu
Gly Gly Thr Ala Thr Leu Thr Ile Ser Gly Ala Gln Ala Glu 65 70 75 80
Asp Glu Ala Asp Tyr Tyr Cys Gln Ser Ser Asp Ser Ser Gly Tyr Met 85
90 95 Asn Asp Phe Ser Ser Arg Thr His Leu Thr Val Leu 100 105
138106PRTLama glama 138Gln Ser Ala Leu Thr Gln Pro Ser Ala Val Ser
Val Ser Leu Gly Gln 1 5 10 15 Thr Ala Glu Ile Thr Cys Arg Gly Arg
Asn Phe Glu Ser Gly Phe Pro 20 25 30 His Trp Tyr Arg Gln Lys Pro
Gly Gln Ser Pro Glu Leu Val Met Phe 35 40 45 Ile Val Asn Asn Arg
Trp Ser Gly Ile Pro Asp Arg Phe Ser Gly Thr 50 55 60 Arg Ser Gly
Asp Ala Ala Thr Leu Thr Ile Thr Gly Val Gln Ala Glu 65 70 75 80 Asp
Glu Ala Asp Tyr Tyr Cys Gln Met Trp Asp Gly Glu Gly Ala Val 85 90
95 Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105 139103PRTHomo
sapiens 139Leu Pro Val Leu Thr Gln Pro Pro Ser Ala Ser Ala Leu Leu
Gly Ala 1 5 10 15 Ser Ile Lys Leu Thr Cys Thr Leu Ser Ser Glu His
Ser Thr Tyr Thr 20 25 30 Ile Glu Trp Tyr Gln Gln Arg Pro Gly Arg
Ser Pro Gln Tyr Ile Met 35 40 45 Lys Val Lys Ser Asp Gly Ser His
Ser Lys Gly Asp Gly Ile Pro Asp 50 55 60 Arg Phe Met Gly Ser Ser
Ser Gly Ala Asp Arg Tyr Leu Thr Phe Ser 65 70 75 80 Asn Leu Gln Ser
Asp Asp Glu Ala Glu Tyr His Cys Gly Glu Ser His 85 90 95 Thr Ile
Asp Gly Gln Val Gly 100 140112PRTLama glama 140Gln Ser Val Leu Thr
Gln Pro Pro Ser Ala Ser Ala Ser Leu Gly Ala 1 5 10 15 Ser Ala Lys
Leu Thr Cys Thr Leu Ser Ser Gly Tyr Ser Ser Tyr Asn 20 25 30 Val
Asp Trp Tyr Gln Gln Val Pro Gly Lys Ser Pro Trp Phe Leu Met 35 40
45 Arg Val Gly Ser Ser Gly Val Gly Ser Lys Gly Ser Gly Val Ser Asp
50 55 60 Arg Phe Ser Gly Ser Ser Ser Gly Leu Glu Arg Tyr Leu Thr
Ile Gln 65 70 75 80 Asn Val Gln Glu Glu Asp Glu Ala Glu Tyr Ile Cys
Gly Ala Asp His 85 90 95 Ala Ser Ser Met Tyr Thr Phe Gly Gly Gly
Thr His Leu Thr Val Leu 100 105 110 141104PRTHomo sapiens 141Gln
Pro Val Leu Thr Gln Pro Pro Ser Ser Ser Ala Ser Pro Gly Glu 1 5 10
15 Ser Ala Arg Leu Thr Cys Thr Leu Pro Ser Asp Ile Asn Val Gly Ser
20 25 30 Tyr Asn Ile Tyr Trp Tyr Gln Gln Lys Pro Gly Ser Pro Pro
Arg Tyr 35 40 45 Leu Leu Tyr Tyr Tyr Ser Asp Ser Asp Lys Gly Gln
Gly Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly Ser Lys Asp Ala
Ser Ala Asn Thr Gly Ile 65 70 75 80 Leu Leu Ile Ser Gly Leu Gln Ser
Glu Asp Glu Ala Asp Tyr Tyr Cys 85 90 95 Met Ile Trp Pro Ser Asn
Ala Ser 100 142117PRTLama glama 142Leu Pro Val Leu Thr Gln Pro Pro
Ser Leu Ser Ala Ser Pro Gly Ala 1 5 10 15 Ser Ala Arg Leu Thr Cys
Ser Leu Asn Ser Gly Thr Ile Val Gly Gly 20 25 30 Tyr His Ile Asn
Trp Tyr Gln Gln Lys Ala Gly Ser Pro Pro Arg Tyr 35 40 45 Leu Leu
Arg Phe Tyr Ser Asp Ser Asn Lys His Gln Gly Ser Gly Val 50 55 60
Pro Ser Arg Phe Ser Gly Ser Lys Asp Ala Ser Ala Asn Ala Gly Leu 65
70 75 80 Leu Leu Ile Ser Gly Leu Gln Val Glu Asp Glu Ala Asp Tyr
Tyr Cys 85 90 95 Gly Ile Tyr Asp Ser Asn Thr Gly Thr Tyr Val Phe
Gly Gly Gly Thr 100 105 110 Lys Leu Thr Val Leu 115 143117PRTLama
glama 143Leu Pro Val Leu Thr Gln Pro Pro Ser Leu Ser Ala Ser Pro
Gly Ala 1 5 10 15 Ser Ala Arg Leu Thr Cys Val Leu Ser Ser Gly Thr
Val Val Gly Gly 20 25 30 Tyr His Ile Asn Trp Tyr Gln Gln Lys Pro
Gly Ser Pro Pro Arg Tyr 35 40 45 Leu Leu Arg Phe Tyr Ser Asp Ser
Ser Lys Gln Gln Gly Ser Gly Val 50 55 60 Pro Ser Arg Phe Ser Gly
Ser Lys Asp Ala Ser Ala Asn Ala Gly Leu 65 70 75 80 Leu Leu Ile Ser
Gly Leu Gln Pro Glu Asp Glu Ala Asp Tyr Tyr Cys 85 90 95 Gly Thr
Tyr His Ser Asn Thr Gly Thr Tyr Val Phe Gly Gly Gly Thr 100 105 110
Lys Leu Thr Val Leu 115 144117PRTLama glama 144Leu Pro Val Leu Asn
Gln Pro Pro Ser Leu Ser Ala Ser Pro Gly Glu 1 5 10 15 Ser Ala Arg
Leu Thr Cys Ser Leu Ser Ser Glu Thr Ile Val Gly Gly 20 25 30 Tyr
Gln Ile Ala Trp Tyr Gln Gln Thr Ala Gly Ser Pro Pro Arg Tyr 35 40
45 Leu Leu Arg Phe Tyr Ser Asp Ser Asn Lys His Gln Gly Ser Gly Val
50 55 60 Pro Ser Arg Phe Ser Gly Ser Lys Asp Ala Ser Ala Asn Ala
Gly Ile 65 70 75 80 Leu Phe Ile Ser Gly Leu Gln Pro Glu Asp Glu Ala
Asp Tyr Tyr Cys 85 90 95 Gly Ile Tyr His Tyr Asn Ser Asp Thr Tyr
Val Phe Gly Gly Gly Thr 100 105 110 Arg Leu Thr Val Leu 115
145117PRTLama glama 145Leu Pro Val Leu Thr Gln Pro Pro Ser Leu Ser
Ala Ser Pro Gly Ser 1 5 10 15 Ser Val Arg Leu Thr Cys Thr Leu Ser
Ser Gly Lys Ser Val Gly Met 20 25 30 Tyr Asp Ile Ser Trp Tyr Gln
Gln Lys Ala Gly Ser Pro Pro Arg Tyr 35 40 45 Leu Leu Tyr Tyr Tyr
Ser Asp Thr Ser Asn His Gln Gly Ser Gly Val 50 55 60 Pro Ser Arg
Phe Ser Gly Ser Lys Asp Ala Ser Ala Asn Ala Gly Leu 65 70 75 80 Leu
Leu Ile Ser Gly Leu Gln Pro Glu Asp Glu Ala Asp Tyr Tyr Cys 85 90
95 Ala Thr Gly Asp Arg Ser Ser Asn Pro His Val Phe Gly Gly Gly Thr
100 105 110 Lys Leu Thr Val Leu 115 146118PRTLama glama 146Gln Ser
Val Leu Thr Gln Pro Pro Ser Leu Ser Ala Ser Pro Gly Ser 1 5 10 15
Ser Val Arg Leu Thr Cys Thr Leu Ser Ser Ala Asn Ser Val Asp Asn 20
25 30 Tyr Tyr Ile Ser Trp Tyr Gln Gln Lys Pro Gly Ser Pro Pro Arg
Tyr 35 40 45 Leu Leu Tyr Tyr Tyr Ser Asp Ser Tyr Met Gln Arg Asp
Ser Gly Leu 50 55 60 Pro Asp Arg Phe Ser Val Ser Lys Asp Ala Ser
Thr Asn Ala Gly Leu 65 70 75 80 Leu Leu Ile Ser Gly Leu Gln Pro Glu
Asp Glu Ala Asp Tyr Tyr Cys 85 90 95 Ala Ser Gly Asp Arg Asn Ser
Asn Pro His Ser Val Phe Gly Gly Gly 100 105 110 Thr His Leu Thr Val
Leu 115 14798PRTHomo sapiens 147Gln Thr Val Val Thr Gln Glu Pro Ser
Leu Thr Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr Cys Ala
Ser Ser Thr Gly Ala Val Thr Ser Gly 20 25 30 Tyr Tyr Pro Asn Trp
Phe Gln Gln Lys Pro Gly Gln Ala Pro Arg Ala 35 40 45 Leu Ile Tyr
Ser Thr Ser Asn Lys His Ser Trp Thr Pro Ala Arg Phe 50 55 60 Ser
Gly Ser Leu Leu Gly Gly Lys Ala Ala Leu Thr Leu Ser Gly Val 65 70
75 80 Gln Pro Glu Asp Glu Ala Glu Tyr Tyr Cys Leu Leu Tyr Tyr Gly
Gly 85 90 95 Ala Gln 148109PRTLama glama 148Gln Ala Val Val Ser Gln
Glu Pro Ser Leu Ser Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu
Thr Cys Gly Leu Ser Ser Gly Ser Val Thr Thr Ser 20 25 30 Asn Tyr
Pro Gly Trp Phe Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr 35 40 45
Leu Ile Tyr Ser Thr Ser Ser Arg His Ser Gly Val Pro Ser Arg Phe 50
55 60 Ser Gly Ser Ile Ser Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly
Ala 65 70 75 80 Gln Pro Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Leu Asp
Ile Gly Ser 85 90 95 Tyr Thr Val Phe Gly Gly Gly Thr Lys Leu Thr
Val Leu 100 105 149113PRTLama glama 149Gln Thr Val Val Thr Gln Glu
Pro Ser Leu Ser Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr
Cys Gly Leu Thr Ser Gly Ser Val Thr Ala Ser 20 25 30 Asn Leu Pro
Gly Trp Phe Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu
Ile Phe Asp Thr Ile Tyr His His Ser Gly Val Pro Ser Arg Phe 50 55
60
Ser Gly Ser Ile Ala Gly Asn Lys Ala Thr Leu Thr Ile Thr Gly Ala 65
70 75 80 Gln Pro Glu Asp Glu Gly Asp Tyr Phe Cys Val Leu Trp Met
Asp Arg 85 90 95 Ile Glu Ala Gly Ser Ile Met Phe Gly Gly Gly Thr
His Leu Ser Val 100 105 110 Val 15095PRTHomo sapiens 150Asp Ile Gln
Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp
Arg Val Thr Ile Thr Cys Arg Ala Ser Gln Ser Ile Ser Ser Tyr 20 25
30 Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Leu Leu Ile
35 40 45 Tyr Ala Ala Ser Ser Leu Gln Ser Gly Val Pro Ser Arg Phe
Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser
Ser Leu Gln Pro 65 70 75 80 Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln
Ser Tyr Ser Thr Pro 85 90 95 151107PRTLama glama 151Asp Ile Gln Leu
Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg
Val Thr Ile Thr Cys Gln Ala Ser Gln Ser Ile Ser Thr Glu 20 25 30
Leu Ser Trp Tyr Gln Gln Lys Pro Gly Gln Thr Pro Lys Leu Leu Ile 35
40 45 Tyr Gly Ala Ser Arg Leu Gln Thr Gly Val Pro Ser Arg Phe Ser
Gly 50 55 60 Ser Gly Ser Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly
Leu Glu Ala 65 70 75 80 Glu Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Asp
Tyr Ser Ser Pro Tyr 85 90 95 Ser Phe Gly Ser Gly Thr Arg Leu Glu
Ile Lys 100 105 152107PRTLama glama 152Asp Ile Gln Leu Thr Gln Ser
Pro Ser Ser Leu Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile
Thr Cys Gln Ala Ser Gln Ser Ile Ser Thr Glu 20 25 30 Leu Ser Trp
Tyr Gln Gln Lys Pro Gly Gln Thr Pro Lys Leu Leu Ile 35 40 45 Tyr
Asp Arg Ser Arg Leu Gln Ile Gly Val Pro Ser Arg Phe Ser Gly 50 55
60 Ser Gly Ser Gly Thr Thr Tyr Thr Leu Thr Ile Ser Asp Leu Glu Ala
65 70 75 80 Glu Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Asp Asp Ser Trp
Pro Tyr 85 90 95 Ser Phe Gly Ser Gly Thr Arg Leu Glu Ile Lys 100
105 153107PRTLama glama 153Asp Ile Val Met Thr Gln Thr Pro Ser Ser
Leu Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln
Ala Ser Gln Ser Ile Asn Thr Glu 20 25 30 Leu Ser Trp Tyr Gln Gln
Lys Pro Glu Gln Pro Pro Lys Leu Leu Ile 35 40 45 Tyr Ala Ala Ser
Arg Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly
Ser Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80
Glu Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Asp Ser Asp Trp Pro Leu 85
90 95 Thr Phe Gly Gln Gly Thr Lys Val Glu Leu Lys 100 105
154107PRTLama glama 154Asp Ile Val Met Thr Gln Ser Pro Ser Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Thr Gln Ser Ile Asn Thr Glu 20 25 30 Leu Ser Trp Tyr Gln Gln Lys
Pro Gly Gln Ser Pro Lys Leu Leu Ile 35 40 45 Tyr Glu Ala Ser Arg
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu
Asp Leu Ala Thr Tyr Tyr Cys Met Ala Asp Leu Asp Trp Pro Leu 85 90
95 Val Phe Gly Gln Gly Thr Lys Val Glu Leu Lys 100 105
155107PRTLama glama 155Asp Ile Val Met Thr Gln Thr Pro Ser Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Ser Ile Ser Thr Glu 20 25 30 Leu Ala Trp Tyr Gln Gln Lys
Pro Gly Gln Thr Pro Lys Leu Leu Ile 35 40 45 Tyr Gly Ala Ser Lys
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu
Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Gly Tyr Ser Ser Pro Leu 85 90
95 Thr Phe Gly Gln Gly Thr Glu Val Asp Leu Lys 100 105
156107PRTLama glama 156Ala Ile Gln Met Thr Gln Ser Pro Ser Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Ser Ile Ser Thr Glu 20 25 30 Leu Ser Trp Tyr Gln Gln Lys
Pro Gly Gln Thr Pro Lys Leu Leu Ile 35 40 45 Tyr Gly Ala Ser Arg
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ser 65 70 75 80 Glu
Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Asp Tyr Ser Trp Pro Leu 85 90
95 Thr Phe Gly Gln Gly Thr Lys Val Glu Leu Thr 100 105
157107PRTLama glama 157Asp Ile Gln Leu Thr Gln Ser Pro Ser Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Ser Ile Ser Thr Glu 20 25 30 Leu Ser Trp Tyr Gln Gln Lys
Pro Gly Gln Thr Pro Lys Leu Leu Ile 35 40 45 Tyr Gly Ala Ser Arg
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu
Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Asp Tyr Ser Trp Pro Arg 85 90
95 Thr Phe Gly Gln Gly Thr Lys Leu Glu Ile Lys 100 105
158107PRTLama glama 158Asp Ile Val Met Thr Gln Thr Pro Pro Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Ser Ile Arg Asn Glu 20 25 30 Leu Ala Trp Tyr Gln Gln Lys
Pro Gly Gln Thr Pro Lys Leu Leu Ile 35 40 45 Tyr Gly Ala Ser Arg
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu
Asp Leu Ala Thr Tyr Tyr Cys Leu Gln Asp Asp Ser Trp Pro Leu 85 90
95 Thr Phe Gly Gln Gly Thr Lys Val Glu Leu Lys 100 105
159107PRTLama glama 159Ala Ile Gln Met Thr Gln Ser Pro Ser Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Ser Ile Ser Ser Tyr 20 25 30 Leu Ala Trp Tyr Gln Gln Lys
Pro Gly Gln Ala Pro Lys Leu Leu Ile 35 40 45 Tyr Gly Ala Ser Thr
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu
Asp Ala Gly Thr Tyr Tyr Cys Gln Gln Tyr Tyr Ser Ile Pro Val 85 90
95 Thr Phe Gly Gln Gly Thr Lys Val Glu Leu Arg 100 105
160106PRTLama glama 160Ala Ile Gln Met Thr Gln Ser Pro Ser Ser Leu
Ser Ala Ser Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala
Ser Gln Ser Ile Ser Ser Tyr 20 25 30 Leu Ala Trp Tyr Gln Gln Lys
Pro Gly Gln Ala Pro Lys Leu Leu Ile 35 40 45 Tyr Gly Ala Ser Arg
Leu Gln Thr Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser
Gly Thr Ser Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu
Asp Ala Gly Thr Tyr Tyr Cys Gln Leu Tyr Gly Ser Arg Pro Ser 85 90
95 Phe Gly Gln Gly Thr Lys Val Glu Leu Lys 100 105 161106PRTLama
glama 161Val Ile Gln Met Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser
Leu Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Gln Ala Ser Gln Ser
Ile Ser Asn Tyr 20 25 30 Leu Ala Trp Tyr Gln Gln Lys Pro Gly Gln
Ala Pro Lys Leu Val Ile 35 40 45 Tyr Gly Ala Ser Arg Leu Gln Thr
Gly Val Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Ser
Phe Thr Leu Thr Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu Asp Ala Gly
Thr Tyr Tyr Cys Gln Gln Tyr Tyr Ser Thr Tyr Ser 85 90 95 Phe Gly
Ser Gly Thr Arg Leu Glu Ile Lys 100 105 162108PRTLama glama 162Asp
Ile Gln Leu Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Leu Gly 1 5 10
15 Asp Ile Val Thr Ile Thr Cys Gln Ala Ser Gln Ser Ile Thr Thr Glu
20 25 30 Leu Ser Trp Tyr Gln Gln Lys Pro Gly Gln Thr Pro Lys Leu
Leu Ile 35 40 45 Tyr Gly Ala Phe Arg Leu Gln Ala Gly Val Pro Ser
Arg Phe Ser Gly 50 55 60 Ser Arg Ser Gly Thr Thr Phe Thr Leu Thr
Ile Ser Gly Leu Glu Ala 65 70 75 80 Glu Asp Leu Ala Thr Tyr Tyr Cys
Leu Gln Asp Tyr Ser Trp Pro Pro 85 90 95 Tyr Ser Phe Gly Ser Gly
Thr Arg Leu Glu Ile Lys 100 105 163101PRTHomo sapiens 163Asp Ile
Val Met Thr Gln Ser Pro Asp Ser Leu Ala Val Ser Leu Gly 1 5 10 15
Glu Arg Ala Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Tyr Ser 20
25 30 Ser Asn Asn Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Lys Pro Gly
Gln 35 40 45 Pro Pro Lys Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu
Ser Gly Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr
Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Leu Gln Ala Glu Asp Val
Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Tyr Tyr Ser Thr Pro 100
164113PRTLama glama 164Glu Thr Thr Leu Thr Gln Ser Pro Ser Ser Val
Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser
Ser Gln Asn Val Gly Ser Gly 20 25 30 Ser Asn Gln Lys Ser Ile Leu
Asn Trp Ile Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg Leu Leu
Ile Tyr Tyr Ala Ser Thr Arg Asp Ala Gly Ile 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Ala Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile
Arg Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90
95 Val Asn Ile Ala Pro Tyr Thr Phe Gly Ser Gly Thr Arg Leu Glu Ile
100 105 110 Arg 165113PRTLama glama 165Glu Ile Val Met Thr Gln Ser
Pro Ser Ser Val Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile
Asn Cys Lys Ser Ser Gln Ser Val Phe Gln Ser 20 25 30 Ser Asn Gln
Lys Asn Tyr Leu Gly Trp Tyr Gln Gln Arg Ile Gly Gln 35 40 45 Ser
Pro Arg Leu Leu Ile Asn Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55
60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr
65 70 75 80 Ile Asn Pro Phe Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys
Gln Gln 85 90 95 Gly Lys Ser Ala Pro Leu Thr Phe Gly Gln Gly Thr
Lys Val Glu Leu 100 105 110 Lys 166113PRTLama glama 166Asp Ile Val
Met Thr Gln Thr Pro Ser Ser Val Thr Ala Ser Ile Gly 1 5 10 15 Glu
Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Tyr Ser 20 25
30 Ser Asn Gln Lys Asn Tyr Leu Thr Trp Tyr Gln Gln Arg Leu Gly Gln
35 40 45 Ser Pro Arg Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser
Gly Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Leu Thr Thr
Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Phe Gln Pro Glu Asp Ala Ala
Val Tyr Phe Cys Gln Gln 85 90 95 Gly Tyr Ser Val Pro Leu Thr Phe
Gly Arg Gly Thr Lys Val Glu Leu 100 105 110 Lys 167113PRTLama glama
167Glu Thr Thr Leu Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Ala Gly
1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu
Leu Asp 20 25 30 Ser Asn Gln Lys Asn Tyr Leu Ala Trp Tyr Gln Gln
Arg Leu Gly Gln 35 40 45 Ser Pro Arg Leu Leu Ile Tyr Trp Ala Ser
Thr Arg Gln Ser Gly Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly
Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Phe Gln Pro
Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Gly Ile Thr Ile
Pro Val Thr Phe Gly Gln Gly Thr Lys Val Glu Leu 100 105 110 Lys
168113PRTLama glama 168Glu Ile Val Leu Thr Gln Ser Pro Ser Ser Val
Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser
Ser Gln Ser Val Leu Tyr Ser 20 25 30 Ser Asp Gln Lys Asn Tyr Leu
Ala Trp Tyr Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg Leu Leu
Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile
Ser Ser Phe Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90
95 Gly Tyr Ser Ser Pro His Ser Phe Gly Ser Gly Thr Arg Leu Glu Ile
100 105 110 Lys 169113PRTLama glama 169Glu Thr Thr Leu Thr Gln Ser
Pro Ser Ser Val Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile
Asn Cys Lys Ser Ser Gln Ser Val Leu Tyr Arg 20 25 30 Ser Asp Gln
Lys Asn Val Leu Ser Trp Tyr Gln Gln Arg Leu Gly Gln 35 40 45 Ser
Pro Arg Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55
60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr
65 70 75 80 Ile Ser Ser Phe Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys
Gln Gln 85 90 95 Gly Tyr Ser Arg Pro Tyr Ser Phe Gly Asn Gly Thr
Arg Leu Glu Ile 100 105 110 Lys 170113PRTLama glama 170Asp Ile Val
Met Thr Gln Thr Pro Ser Ser Val Thr Ala Ser Ala Gly 1 5 10 15 Glu
Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Asn Asn 20 25
30
Ser Asp Gln Lys Ile Tyr Leu Ala Trp Tyr Gln Gln Arg Leu Gly Gln 35
40 45 Ser Pro Arg Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly
Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe
Thr Leu Thr 65 70 75 80 Ile Ser Ser Phe Gln Pro Glu Asp Ala Ala Val
Tyr Tyr Cys Gln Gln 85 90 95 Glu Tyr Ser Ala Pro Ala Ser Phe Gly
Ser Gly Thr Arg Leu Glu Ile 100 105 110 Lys 171113PRTLama glama
171Asp Ile Val Met Thr Gln Ser Pro Gly Ser Val Thr Ala Ser Thr Gly
1 5 10 15 Glu Asn Ile Thr Ile Asn Cys Lys Ser Ser Gln Asn Val Leu
Leu Ser 20 25 30 Ser Asp Gln Lys Asn Tyr Leu Asn Trp Tyr Gln Gln
Arg Leu Gly Gln 35 40 45 Ser Pro Arg Leu Leu Ile Tyr Trp Ala Ser
Thr Arg Lys Ser Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Arg Gly
Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Asn Ser Phe Gln Pro
Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Gly Tyr Ser Ile
Pro His Thr Phe Gly Gly Gly Thr Arg Leu Glu Ile 100 105 110 Lys
172113PRTLama glama 172Asp Ile Val Met Thr Gln Thr Pro Thr Ser Val
Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser
Ser Gln Ser Leu Leu Tyr Ser 20 25 30 Ala Asn Gln Lys Val Tyr Leu
Ala Trp Tyr Gln Gln Arg Leu Gly Gln 35 40 45 Ser Pro Arg Leu Leu
Phe Arg Trp Thr Ser Thr Arg Gln Pro Gly Ile 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile
Ser Arg Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90
95 Ala Tyr Ala Arg Pro His Thr Phe Gly Ser Gly Thr Arg Leu Glu Ile
100 105 110 Lys 173113PRTLama glama 173Asp Ile Val Met Thr Gln Thr
Pro Thr Ser Val Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile
Asn Cys Lys Ser Ser Gln Ser Leu Leu Tyr Ser 20 25 30 Ala Asn Gln
Lys Val Tyr Leu Ala Trp Tyr Gln Gln Arg Leu Gly Gln 35 40 45 Ser
Pro Arg Leu Leu Phe Arg Trp Thr Ser Thr Arg Gln Pro Gly Ile 50 55
60 Pro Asp Arg Phe Ser Val Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr
65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys
Gln Gln 85 90 95 Ala Tyr Ala Arg Pro His Thr Phe Gly Ser Gly Thr
Arg Leu Glu Ile 100 105 110 Lys 174113PRTLama glama 174Glu Ile Val
Met Thr Gln Ser Pro Thr Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu
Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Leu Leu Tyr Ser 20 25
30 Ala Asn Gln Lys Val Tyr Leu Ala Trp Tyr Gln Gln Arg Leu Gly Gln
35 40 45 Ser Pro Arg Leu Leu Phe Tyr Trp Thr Ser Thr Arg Gln Ser
Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Ser
Phe Thr Leu Thr 65 70 75 80 Ile Ser Gly Val Gln Pro Glu Asp Ala Ala
Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Thr Arg Pro His Thr Phe
Gly Ser Gly Thr Arg Leu Glu Ile 100 105 110 Arg 175113PRTLama glama
175Glu Ile Val Leu Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Val Gly
1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Lys
Ser Gly 20 25 30 Ser Asn Gln Ile Thr Tyr Leu Asn Trp Tyr Gln Gln
Thr Pro Gly Gln 35 40 45 Ser Pro Arg Leu Leu Ile Tyr Tyr Ala Ser
Thr Gln Glu Leu Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly
Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro
Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Ser Ala
Pro Phe Ser Phe Gly Ser Gly Thr Arg Leu Glu Ile 100 105 110 Lys
176113PRTLama glama 176Glu Thr Thr Leu Thr Gln Ser Pro Ser Ser Val
Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser
Ser Gln Ser Val Val Ser Gly 20 25 30 Ser Asn Gln Lys Ile Tyr Leu
Asn Trp Tyr Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg Leu Leu
Ile Tyr Tyr Ala Ser Thr Gln Glu Ser Gly Ile 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile
Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90
95 Gly Ala Ser Ala Pro Val Ser Phe Gly Ser Gly Thr Arg Leu Glu Ile
100 105 110 Lys 177113PRTLama glama 177Asp Ile Val Met Thr Gln Thr
Pro Ser Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu Thr Val Thr Ile
Gly Cys Lys Ser Ser Gln Ser Val Val Ser Gly 20 25 30 Ser Ser Gln
Lys Ser Phe Leu Asn Trp Tyr Gln Gln Arg Pro Gly Gln 35 40 45 Ser
Pro Arg Leu Leu Ile Tyr Tyr Ala Ser Thr Leu Glu Leu Gly Ile 50 55
60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr
65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys
Gln Gln 85 90 95 Ala Tyr Ser Thr Pro Ser Thr Phe Gly Pro Gly Thr
Lys Leu Glu Ile 100 105 110 Arg 178113PRTLama glama 178Asp Ile Val
Met Thr Gln Thr Pro Arg Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu
Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Ser Gly 20 25
30 Ser Asn Gln Lys Ser Tyr Leu Asn Trp Tyr Gln Thr Arg Pro Gly Gln
35 40 45 Ser Pro Arg Leu Leu Ile Tyr Tyr Ala Ser Thr Gln Glu Ser
Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp
Phe Thr Leu Thr 65 70 75 80 Ile Ser Gly Val Gln Pro Glu Asp Ala Ala
Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Ser Ala Pro Ala Thr Phe
Gly Gln Gly Thr Thr Val Glu Val 100 105 110 Ile 179113PRTLama glama
179Asp Val Val Met Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Val Gly
1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Arg
Ser Gly 20 25 30 Ser Asn Glu Lys Ser Ser Leu Asn Trp Tyr Gln Gln
Arg Pro Gly Gln 35 40 45 Ser Pro Arg Leu Leu Ile Tyr Tyr Ala Ser
Thr Gln Glu Ser Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly
Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro
Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Ser Tyr
Pro Ile Thr Phe Gly Gln Gly Thr Lys Val Glu Leu 100 105 110 Lys
180113PRTLama glama 180Asp Val Val Met Thr Gln Ser Pro Ser Ser Val
Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile Asp Cys Lys Ser
Ser Gln Ile Leu Val Ser Gly 20 25 30 Ser Asp Gln Lys Ser Tyr Leu
Ser Trp Tyr Gln Gln Arg Pro Gly Gln 35 40 45 Ser Pro Arg Leu Leu
Ile Tyr Tyr Ala Ser Thr Gln Lys Leu Gly Ile 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile
Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90
95 Thr Tyr Glu Ala Pro Tyr Ser Phe Gly Asn Gly Thr Arg Leu Glu Ile
100 105 110 Lys 181113PRTLama glama 181Glu Ile Val Met Thr Gln Thr
Pro Ser Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu Lys Val Thr Ile
Asn Cys Lys Ser Ser Gln Ser Val Val Leu Ala 20 25 30 Ser Asn Gln
Lys Thr Tyr Leu Asn Trp Tyr Gln Gln Arg Pro Gly Gln 35 40 45 Ser
Pro Arg Leu Leu Ile Tyr Tyr Ala Ser Thr Gln Gln Leu Gly Ile 50 55
60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr
65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys
Gln Gln 85 90 95 Ala Leu Ser Ala Pro Tyr Ser Phe Gly Ser Gly Thr
Arg Leu Glu Ile 100 105 110 Lys 182113PRTLama glama 182Asp Val Val
Met Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Val Gly 1 5 10 15 Glu
Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Val Ser Gly 20 25
30 Ser Asn Gln Lys Ser Tyr Leu Asn Trp Tyr Gln Gln Arg Pro Gly Gln
35 40 45 Ser Pro Arg Leu Leu Ile Tyr Tyr Ala Ser Thr Gln Glu Leu
Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp
Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Val Gln Pro Glu Asp Ala Ala
Val Tyr Tyr Cys Gln Gln 85 90 95 Ala Tyr Ser Thr Pro Tyr Ser Phe
Gly Ser Gly Thr Arg Leu Glu Ile 100 105 110 Lys 183112PRTLama glama
183Glu Ile Val Met Thr Gln Ser Pro Ser Thr Val Thr Ala Ser Val Gly
1 5 10 15 Glu Lys Val Thr Ile Lys Cys Lys Ser Ser Gln Ser Val Val
Ser Gly 20 25 30 Ser Asn Gln Lys Thr Tyr Leu Asn Trp Tyr Gln Gln
Arg Pro Glu Gln 35 40 45 Ser Pro Arg Leu Leu Met Tyr Tyr Ala Ala
Thr Pro Glu Leu Gly Ile 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly
Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile Asn Ser Val Gln Pro
Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90 95 Thr Tyr Ser Pro
Pro Asn Phe Gly Ser Gly Thr Arg Leu Glu Ile Ala 100 105 110
184113PRTLama glama 184Asp Val Val Met Thr Gln Ser Pro Ser Ser Val
Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile Asn Cys Lys Ser
Ser Gln Ser Leu Leu Trp Ser 20 25 30 Asp Asn Lys Lys Asn Tyr Leu
Ser Trp Tyr Gln Gln Arg Leu Gly Gln 35 40 45 Ser Pro Arg Leu Leu
Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Ala 50 55 60 Pro Asp Arg
Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr 65 70 75 80 Ile
Ser Asn Phe Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys Gln Gln 85 90
95 Gly Tyr Ser Ile Pro Ile Thr Phe Gly Gln Gly Thr Lys Val Glu Leu
100 105 110 Ser 185113PRTLama glama 185Asp Ile Val Leu Thr Gln Ser
Pro Ser Ser Val Thr Ala Ser Ala Gly 1 5 10 15 Glu Lys Val Thr Ile
Thr Cys Glu Ser Ser Gln Ser Val Leu Arg Ser 20 25 30 Ser Asn Gln
Arg Asn Tyr Leu Asn Trp Tyr Gln Gln Arg Leu Gly Gln 35 40 45 Ser
Pro Arg Leu Ile Ile Tyr Trp Ala Ser Thr Arg Glu Ser Gly Val 50 55
60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp Phe Thr Leu Thr
65 70 75 80 Ile Ser Ser Phe Gln Pro Glu Asp Ala Ala Val Tyr Tyr Cys
Gln Gln 85 90 95 Ala Ser Ser Leu Pro Phe Thr Phe Gly Gln Gly Thr
Lys Val Glu Leu 100 105 110 Lys 186112PRTLama glama 186Glu Ile Val
Leu Thr Gln Ser Pro Ser Ser Val Thr Ala Ser Ala Gly 1 5 10 15 Glu
Lys Val Thr Ile Asn Cys Lys Ser Ser Gln Ser Val Leu Tyr Ser 20 25
30 Ser Asn Gln Lys Asn Tyr Leu Ala Trp Tyr Gln Gln Arg Leu Gly Gln
35 40 45 Ser Pro Arg Leu Leu Ile Tyr Trp Ala Ser Thr Arg Glu Ser
Gly Val 50 55 60 Pro Asp Arg Phe Ser Gly Ser Gly Ser Thr Thr Asp
Phe Thr Leu Thr 65 70 75 80 Ile Ser Ser Phe Gln Pro Glu Asp Ala Ala
Val Tyr Tyr Cys Gln Gln 85 90 95 Tyr Leu Ser Gly Val Thr Phe Gly
Gln Gly Thr Lys Val Glu Leu Lys 100 105 110 18798PRTHomo sapiens
187Gln Val Gln Leu Val Gln Ser Gly Ala Glu Val Lys Lys Pro Gly Ala
1 5 10 15 Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr
Gly Tyr 20 25 30 Tyr Met His Trp Val Arg Gln Ala Pro Gly Gln Gly
Leu Glu Trp Met 35 40 45 Gly Trp Ile Asn Pro Asn Ser Gly Gly Thr
Asn Tyr Ala Gln Lys Phe 50 55 60 Gln Gly Arg Val Thr Met Thr Arg
Asp Thr Ser Ile Ser Thr Ala Tyr 65 70 75 80 Met Glu Leu Ser Arg Leu
Arg Ser Asp Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Arg
188117PRTLama glama 188Glu Val Gln Leu Val Gln Ser Gly Ala Glu Leu
Arg Asn Pro Gly Ala 1 5 10 15 Ser Val Lys Val Ser Cys Lys Ala Ser
Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Tyr Ile Asp Trp Val Arg Gln
Ala Pro Gly Gln Gly Leu Glu Trp Met 35 40 45 Gly Arg Ile Asp Pro
Glu Asp Gly Asp Thr Lys Tyr Ala Pro Lys Phe 50 55 60 Gln Gly Arg
Val Thr Phe Thr Ala Asp Thr Ser Thr Ser Thr Ala Tyr 65 70 75 80 Val
Glu Leu Ser Ser Leu Arg Ser Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Ala Arg Ser Gly Arg Tyr Glu Leu Asp Tyr Trp Gly Leu Gly Thr Gln
100 105 110 Val Thr Val Ser Ser 115 189122PRTLama glama 189Glu Val
Gln Leu Val Gln Ser Gly Ala Glu Leu Arg Asn Pro Gly Ala 1 5 10 15
Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20
25 30 Tyr Ile Glu Trp Val Arg Gln Ala Pro Gly Gln Gly Leu Glu Trp
Met 35 40 45 Gly Arg Ile Asp Pro Glu Asp Gly Gly Thr Lys Tyr Ala
Gln Lys Phe 50 55 60 Gln Gly Arg Val Thr Phe Thr Ala Asp Thr Ser
Thr Ser Thr Ala Tyr 65 70 75 80 Val Glu Leu Ser Ser Leu Arg Ser Glu
Asp Thr Ala Val Tyr Phe Cys 85 90 95 Ala Thr Ser Gly Ala Thr Met
Ser Asp Leu Asp Ser Phe Gly Ser Trp 100 105 110 Gly Gln Gly Thr Gln
Val Thr Val Ser Ser 115 120 19098PRTHomo sapiens 190Glu Val Gln Leu
Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys 191122PRTLama
glama 191Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro
Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Thr Thr Ser Gly Phe Thr
Phe Glu Asp Tyr 20 25 30 Pro Met Asn Trp Val Arg Gln Ala Pro Gly
Lys Gly Leu Glu Trp Val 35 40 45 Ser Val Ile Ser Arg Asn Gly Gly
Ser Thr Tyr Tyr Ala Glu Ser Met 50 55 60 Lys Gly Arg Phe Thr Ile
Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Val Met Asn
Ser Leu Thr Ser Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Thr Lys
Pro Ser Thr Ser Trp Ser Thr Asn Tyr Gly Met Asp Tyr Trp 100 105 110
Gly Lys Gly Thr Gln Val Thr Val Ser Ser 115 120 192115PRTLama glama
192Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly
1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Asp
Asp Tyr 20 25 30 Gly Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly
Leu Glu Trp Val 35 40 45 Ser Gly Ile Thr Trp Asn Gly Gly Thr Thr
Asn Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg
Asp Ser Ala Lys Asn Met Val His 65 70 75 80 Leu Gln Met Asp Ser Leu
Lys Ser Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Ala Tyr
Arg Gly Ser Thr Leu Gly Gln Gly Thr Gln Val Thr 100 105 110 Val Ser
Ser 115 193122PRTLama glama 193Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Val Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Thr Tyr 20 25 30 Tyr Met Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile
Asn Thr Gly Gly Asp Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Met
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Ser 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Leu Tyr Tyr
Cys 85 90 95 Ala Arg Asp Leu Arg Asp Tyr Tyr Ser Asp Tyr Thr Phe
Val Asn Trp 100 105 110 Gly Gln Gly Thr Gln Val Thr Val Ser Ser 115
120 194128PRTLama glama 194Glu Val Gln Leu Val Glu Ser Gly Gly Gly
Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ser Ala
Ser Gly Phe Arg Phe Ser Thr Tyr 20 25 30 Ala Met Thr Trp Val Arg
Gln Ala Pro Gly Lys Gly Leu Val Trp Val 35 40 45 Ser Thr Val Asp
Ala Ser Gly Ala Thr Thr Ser Tyr Ala Glu Ser Val 50 55 60 Lys Gly
Arg Phe Thr Ile Ser Arg Asp Asn Thr Lys Gly Ala Leu Tyr 65 70 75 80
Leu Gln Met Asn Ser Leu Lys Phe Glu Asp Thr Ala Val Tyr Tyr Cys 85
90 95 Gly Thr Arg Ser Gly Thr Trp Trp Arg Gly Ser Tyr Ile Tyr Thr
Glu 100 105 110 Ser Glu Glu Asn Gly Trp Gly Gln Gly Thr Gln Val Thr
Val Ser Ser 115 120 125 195125PRTLama glama 195Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Ser Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Asp Tyr 20 25 30 Ala
Met Ile Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ser Ile Asn Asn Gly Gly Trp Ser Thr Arg Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala
Leu Tyr Tyr Cys 85 90 95 Ala Arg Glu Gly Tyr Tyr Ser Asp Tyr Ala
Ala Val Gly His Ala Tyr 100 105 110 Asp Tyr Trp Gly Gln Gly Thr Gln
Val Thr Val Ser Ser 115 120 125 196124PRTLama glama 196Glu Val Gln
Leu Val Gln Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Arg Tyr 20 25
30 Ser Met Ser Trp Val Arg Gln Ala Pro Gly Gln Gly Leu Glu Trp Val
35 40 45 Ser Tyr Ile Asp Ser Asp Gly Ala Thr Thr Thr Tyr Ala Asp
Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys
Asn Thr Leu Asn 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Asp Asp
Ala Gly Val Tyr Tyr Cys 85 90 95 Ala Ser Phe Gly Ser Ser Ala Tyr
Ser Trp Gly Tyr Leu Gly Met Asp 100 105 110 His Trp Gly Lys Gly Ala
Leu Val Thr Val Phe Ser 115 120 197123PRTLama glama 197Glu Val Gln
Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ile Tyr 20 25
30 Gly Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val
35 40 45 Ser Val Ile Asn Ser Gly Gly Asp Ser Thr Ser Tyr Ala Asp
Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys
Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Asn Leu Lys Pro Glu Asp
Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Gly Gly Val Leu Gly His
Ser Asn Tyr Tyr Ala Met Asp Tyr 100 105 110 Trp Gly Lys Gly Thr Leu
Val Thr Val Ser Ser 115 120 198123PRTLama glama 198Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ser Ala Ser Gly Leu Thr Ala Ser Asn Thr 20 25 30
Ala Met Ala Trp Val Arg Gln Val Pro Gly Lys Gln Leu Glu Trp Val 35
40 45 Ser Asp Ile Asn Ser Leu Gly Asn Asn Ile Phe Tyr Ser Lys Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ala Arg Asp Lys Thr Lys Asn
Thr Leu Val 65 70 75 80 Leu Ser Met Asn Ser Leu Ser Pro Glu Asp Thr
Ala Val Tyr Tyr Cys 85 90 95 Val Ala Asp Ala Ser Ala Leu Ser Trp
Ser Arg Pro Ala Leu Glu Val 100 105 110 Trp Gly Gln Gly Thr Leu Val
Thr Val Ser Asp 115 120 199123PRTLama glama 199Glu Val Gln Leu Met
Gln Ser Gly Gly Gly Leu Ala Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Leu Ser Asn His 20 25 30 Trp
Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ala Ile Ser Ser Ser Gly Ser Ser Thr Tyr Tyr Ile Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ala Glu Asp Lys Gly
Val Tyr Tyr Cys 85 90 95 Gly Lys Asp Glu Ser Arg Gly Ile Glu Pro
Gly Trp Gly Ser Ile Tyr 100 105 110 Trp Gly Gln Gly Thr Gln Val Thr
Val Ser Ser 115 120 200123PRTLama glama 200Glu Val Gln Leu Val Gln
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Ala Phe Ser Ser Ser 20 25 30 Asp Met
Ser Trp Val Arg Gln Ala Pro Thr Lys Gly Leu Glu Trp Val 35 40 45
Ser Gly Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Gly Glu Ser Met 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Ser Ser Leu Lys Pro Glu Asp Thr Ala Val
Tyr Tyr Cys 85 90 95 Thr Arg Tyr Asp Ser Phe Gly Trp Asn Val Arg
Tyr Gly Met Asp Tyr 100 105 110 Trp Gly Lys Gly Thr Leu Val Thr Val
Ser Ser 115 120 201122PRTLama glama 201Glu Val Gln Leu Val Gln Ser
Gly Gly Asp Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Ala Phe Ser Ser Tyr 20 25 30 His Ile Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Ile Ile Gly Arg Trp Gly Ala Asp Ile Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Leu Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr
Tyr Cys 85 90 95 Thr Ala Glu Leu Asn Trp Glu Pro Glu Asn Ala Tyr
Ser Asp His Trp 100 105 110 Gly Gln Gly Thr Gln Val Thr Val Ser Ser
115 120 202122PRTLama glama 202Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Val
Gly Ser Gly Ile Thr Phe Ser Lys Tyr 20 25 30 Ala Met Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Asn Ile
Asp Ala Asn Ser Glu Leu Thr Thr Tyr Glu Asp Thr Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Val Lys Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Thr Lys Asp Pro Arg Asn Ser Trp Tyr Thr Tyr Gly Met
Asp Tyr Gly 100 105 110 Gly Lys Gly Thr Leu Val Val Val Ser Ser 115
120 203121PRTLama glama 203Glu Val Gln Leu Val Gln Ser Gly Gly Gly
Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala
Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Asn Trp Val Arg
Gln Pro Pro Gly Lys Gly Leu Glu Trp Leu 35 40 45 Ser Val Ile Ser
Ser Ser Gly Gly Asn Thr Lys Tyr Ser Asp Ser Val 50 55 60 Lys Gly
Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Met Val Tyr 65 70 75 80
Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys 85
90 95 Ala Lys Arg Ile Glu Gly Gly Met Gly Tyr Gly Met Asp Tyr Trp
Gly 100 105 110 Lys Gly Thr Pro Val Thr Val Ser Ser 115 120
204121PRTLama glama 204Glu Val Gln Leu Val Gln Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Thr Phe Asp Asp Tyr 20 25 30 Gly Lys Thr Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ser Ile Tyr Ile
Phe Val Gly Asn Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Gly Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Thr Asn Leu Lys Pro Glu Asp Thr Ala Lys Tyr Phe Cys 85 90
95 Val Lys Ser Pro Glu Trp Thr Tyr Tyr Tyr Gly Met Asp Ser Trp Gly
100 105 110 Lys Gly Thr Leu Val Thr Val Ser Ser 115 120
205121PRTLama glama 205Glu Val Gln Leu Val Gln Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Thr Ile Ser Ser
Gly Gly Ala Ser Thr Thr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Ala Lys Ser Phe Gly Leu Val Thr Gly Val Tyr Phe Gly Ser Trp Gly
100 105 110 Gln Gly Thr Gln Val Thr Val Ser Ser 115 120
206121PRTLama glama 206Glu Val Gln Leu Val Gln Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Ala Phe Ser Asp Tyr 20 25 30 Asp Met Ser Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ile His Val Ser
Gly Asp Gly Arg Ile Phe Tyr Ala Asp Ser Met 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Met Tyr 65 70 75 80 Leu
Gln Leu Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Ala Ala Asp Ser Tyr His Ala Ala Thr Gly Tyr Leu Glu Gln Trp Gly
100 105 110 Gln Gly Thr Leu Val Thr Val Ser Ser 115 120
207121PRTLama glama 207Glu Val Gln Leu Val Gln Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Arg Phe Thr Asp Tyr 20 25 30 Tyr Met Gly Trp Ile Arg Gln
Thr Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ser Ile Tyr Ser
Leu Gly Asp Pro Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Gly Lys Asp Thr Val Tyr 65 70 75 80 Leu
Glu Met Asn Ser Leu Lys Ser Asp Asp Thr Gly Leu Tyr Tyr Cys 85 90
95 Ala Arg Asp His Arg Gly Trp Gly Thr Ile Arg Tyr Asp Tyr Trp Gly
100 105 110 Gln Gly Thr Gln Val Thr Val Ser Ser 115 120
208120PRTLama glama 208Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Ala Phe Ser Arg Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Met Thr Thr
Gly Ser Asp Tyr Ile Tyr Ser Ala Val Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Phe Glu Asp Thr Ala Val Tyr Tyr Cys
85 90 95 Ala Lys Gly Gly Val Ile Asp Ala Asp His Phe Glu Ser Trp
Gly Gln 100 105 110 Gly Thr Gln Val Thr Val Ser Ser 115 120
209120PRTLama glama 209Glu Val Gln Leu Val Gly Val Trp Gly Arg Leu
Gly Ala Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Pro Phe Ser Ile Tyr 20 25 30 Phe Met Ser Trp Phe Arg Gln
Arg Pro Glu Lys Gly Ala Arg Met Val 35 40 45 Ser Asp Ile Asp Lys
Ser Gly Gly Arg Thr Thr Tyr Ala Pro Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ala Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Thr Ile Asn Thr Leu Glu Pro Asn Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Ala Lys Pro Thr Ser Ser Met Trp Ser Pro Gly Asp Tyr Trp Gly Gln
100 105 110 Gly Thr Gln Val Thr Val Ala Ser 115 120 210120PRTLama
glama 210Glu Val Gln Leu Val Gln Ser Gly Gly Asp Leu Val Gln Pro
Gly Gly 1 5 10 15 Ser Leu Arg Val Ser Cys Ala Val Ser Gly Phe Thr
Phe Ile Tyr Tyr 20 25 30 Gly Met Ser Trp Val Arg Gln Ser Pro Gly
Lys Gly Leu Glu Trp Ile 35 40 45 Ser Thr Ile Ser Asn Gly Gly Ser
Thr Ala Asn Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile
Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Glu Met Asn
Asp Leu Lys Pro Glu Asp Thr Ala Leu Tyr Tyr Cys 85 90 95 Ala Arg
Ile Ser Thr Glu Leu Gly Asn Thr Leu Asp Ala Trp Gly Gln 100 105 110
Gly Ser Leu Val Thr Val Ser Ser 115 120 211120PRTLama glama 211Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Thr Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Gly Ile Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ser Val Thr Gly Asp Gly Leu Ser Thr Thr Ala
Ile Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Thr Arg Asp Asn
Ala Lys Asn Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Asn Leu Lys Leu
Asp Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Leu Asp Val Tyr
Val Asp Tyr Gly Met Asp Tyr Trp Gly Lys 100 105 110 Gly Thr Leu Val
Thr Val Ser Ser 115 120 212120PRTLama glama 212Glu Val Gln Leu Val
Gln Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Arg Ser Tyr 20 25 30 Tyr
Met Asn Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Val Ser Ser Ser Gly Gly Gly Thr Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Gln Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala
Leu Tyr Tyr Cys 85 90 95 Ala Arg Glu Ser Gly Gly Pro Gly Met Asp
Leu Glu Val Trp Gly Gln 100 105 110 Gly Thr Leu Val Thr Val Ser Ser
115 120 213119PRTLama glama 213Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile
Asn Ser Gly Gly Gly Ser Thr Ser Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Ala Lys Trp Glu Val Val Thr Leu Asp Phe Gly Ser Trp
Gly Gln Gly 100 105 110 Thr Gln Val Thr Val Ser Ser 115
214119PRTLama glama 214Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Arg 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ala
Gly Phe Thr Phe Ser Thr Tyr 20 25 30 Trp Met Tyr Trp Ile Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ala Thr Ile Thr Ser
Leu Gly Gly Ser Gln Trp Tyr Val Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Pro Glu Asp Met Ala Gln Tyr Tyr Cys 85 90
95 Val Arg Gly Gly Leu Tyr Gly Tyr Asp Tyr Glu His Trp Gly Gln Gly
100 105 110 Thr Gln Val Thr Val Ser Ser 115 215118PRTLama glama
215Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Lys Pro Gly Gly
1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser
Ser Ala 20 25 30 Tyr Met Asn Trp Val Arg Gln Ala Pro Gly Lys Gly
Leu Glu Trp Val 35 40 45 Ser Gly Leu Thr Asn Tyr Gly Ser Thr Ser
Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg
Asp Asn Thr Val Asn Thr Val Tyr 65 70 75 80 Leu Gln Leu Asn Ser Leu
Lys Pro Glu Asp Thr Gly Leu Tyr Tyr Cys 85 90 95 Ala Arg Val Gly
Asn Met Trp Ser Ser Asp Tyr Trp Gly Gln Gly Thr 100 105 110 Gln Val
Thr Val Ser Ser 115 216118PRTLama glama 216Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Asn Tyr 20 25 30 Trp Met
Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Ser Ile Asp Thr Ser Gly Gly Ile Thr Met Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala Leu
Tyr Tyr Cys 85 90 95 Ala Lys Ala Leu Gly Tyr Asn Ala Phe Asp Ala
Trp Gly Arg Gly Thr 100 105 110 Leu Val Thr Val Ser Ser 115
217118PRTLama glama 217Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Val 1 5 10 15 Ser Leu Arg Leu Ser Cys Thr Thr Ser
Gly Phe Thr Phe Ser Thr Gln 20 25 30 Gly Met Asn Trp Val Arg Gln
Pro Pro Glu Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile Asp Ser
Arg Gly Asn Thr Thr Asn Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Ala Leu Tyr 65 70 75 80 Leu
Gln Met Asn Asp Leu Arg Pro Asp Asp Thr Ala Met Tyr Tyr Cys 85 90
95 Thr Asn Thr Gly Pro Trp Tyr Thr Tyr Asn Tyr Trp Gly Gln Gly Thr
100 105 110 Gln Val Thr Val Ser Ser 115 218117PRTLama glama 218Glu
Val Gln Leu Val Gln Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Asp
Trp Ile 35 40 45 Ser Gly Ile Ser Val Gly Gly Ala Ser Thr Tyr Tyr
Ala Arg Ser Val 50 55 60 Gln Asp Arg Phe Thr Ile Ser Arg Asp Asn
Thr Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Ser Ser Leu Arg Ser
Glu Asp Thr Ala Val Tyr Trp Cys 85 90 95 Thr Arg Gly Gly Asn Thr
Pro Tyr Asp Tyr Trp Gly Gln Gly Thr Gln 100 105 110 Val Thr Val Ser
Ser 115 219114PRTLama glama 219Glu Val Gln Leu Val Gln Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Asn Phe Asp Asp Tyr 20 25 30 Pro Met Thr Trp Ile
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ala Ser Ile
Tyr Ser Gly Ile Ser Thr Thr Tyr Tyr Pro Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Thr Asn Asp Ala Lys Asn Thr Val Tyr 65 70
75 80 Leu Gln Met Asn Asp Leu Lys Ser Asp Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Ala Asn Pro Arg Arg Asn Tyr Trp Gly Gln Gly Thr His
Val Thr Val 100 105 110 Ser Ser 22097PRTHomo sapiens 220Glu Val Gln
Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25
30 Asp Met His Trp Val Arg Gln Ala Thr Gly Lys Gly Leu Glu Trp Val
35 40 45 Ser Ala Ile Gly Thr Ala Gly Asp Thr Tyr Tyr Pro Gly Ser
Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Glu Asn Ala Lys Asn
Ser Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Arg Ala Gly Asp Thr
Ala Val Tyr Tyr Cys Ala 85 90 95 Arg 221121PRTLama glama 221Glu Val
Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Ser Ser Thr Tyr 20
25 30 Ala Met Ser Trp Val Arg Gln Gly Pro Gly Lys Ala Leu Glu Trp
Val 35 40 45 Ser Thr Ile Asn Gly Ala Asp Phe Thr Ser Tyr Val Asp
Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Thr Lys
Asn Thr Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Asp
Thr Ala Val Tyr Tyr Cys Ala 85 90 95 Lys Gly Leu Ser Gly Leu Asn
Trp Tyr Gly Phe Gly Asp Tyr Trp Gly 100 105 110 Gln Gly Thr Gln Val
Thr Val Ser Ser 115 120 222121PRTLama glama 222Glu Val Gln Leu Val
Gln Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Thr Tyr 20 25 30 Trp
Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Tyr Val 35 40
45 Gly Ser Ile Asp Asn Asp Gly Phe Thr Tyr Tyr Ser Glu Asp Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Gly Asp Asn Ala Arg Asn Thr Leu
Tyr Leu 65 70 75 80 Gln Ile Asn Ser Val Lys Pro Glu Asp Thr Ala Leu
Tyr Tyr Cys Val 85 90 95 Arg Gly Val Tyr Tyr Met Asp Tyr Glu Pro
Arg Met Asp Tyr Trp Gly 100 105 110 Lys Gly Thr Leu Val Thr Val Ser
Ser 115 120 223118PRTLama glama 223Glu Val Gln Leu Val Glu Ser Gly
Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys
Thr Ala Ser Gly Phe Thr Phe Ser Thr His 20 25 30 Thr Met Ser Trp
Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly
Ile Asn Ser Ala Tyr Gly Thr Ile Tyr Ile Asp Ser Val Lys 50 55 60
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr Leu 65
70 75 80 Gln Met Asn Ser Leu Lys Pro Asp Asp Thr Ala Val Tyr Tyr
Cys Val 85 90 95 Gln Val Val Asp Thr Trp Asp Glu Tyr Asp Tyr Trp
Gly Gln Gly Thr 100 105 110 Gln Val Thr Val Ser Ser 115
224114PRTLama glama 224Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Arg Phe Thr Phe Gly Thr Ser 20 25 30 Gly Met Thr Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Thr Ile Asn Ser
Gly Gly Leu Thr Thr Ser Ala Asp Ser Val Lys 50 55 60 Gly Arg Phe
Thr Ile Ser Arg Asp Asn Gly Lys Asn Thr Leu Tyr Leu 65 70 75 80 Gln
Met Asp Ser Leu Lys Pro Asp Asp Thr Ala Val Tyr Tyr Cys Ala 85 90
95 Asn Leu Leu Glu Leu Gly His Trp Gly Arg Gly Thr Gln Val Thr Val
100 105 110 Ser Ser 225123PRTLama glama 225Glu Val Gln Leu Val Gln
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met
Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Thr Ile Thr Lys Gly Gly Ser Thr Tyr Tyr Ser Asp Ser Val Lys 50
55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala Val Tyr
Tyr Cys Ala 85 90 95 Lys Ser Asn Ser Gly Thr His Trp Tyr Glu Tyr
Tyr Gly Met Asp Tyr 100 105 110 Trp Gly Lys Gly Thr Leu Val Thr Val
Ser Ser 115 120 226115PRTLama glama 226Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Asp 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Gly Asn Tyr 20 25 30 Asp Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45 Ser
Gly Ile Asn Ser Gly Gly Lys Thr Tyr Ser Ala Asp Ser Val Lys 50 55
60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr Leu
65 70 75 80 Gln Met Asn Asn Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys Ile 85 90 95 Leu Gly Ile Val Thr Leu Gly Ser Trp Gly Gln Gly
Thr Gln Val Thr 100 105 110 Val Ser Ser 115 22735DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
227gcctccacca gtgcacagtc tgtgytgack cagcc 3522835DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
228gcctccacca gtgcacagtc tgtgytgacg cagcc 3522935DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
229gcctccacca gtgcacagtc tgtcgtgacg cagcc 3523035DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
230gcctccacca gtgcacagtc tgccctgact cagcc 3523138DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
231gcctccacca gtgcactttc ctatgagctg acwcagcc
3823238DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 232gcctccacca gtgcactttc ttctgagctg actcagga
3823335DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 233gcctccacca gtgcacagcy tgtgctgact caatc
3523435DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 234gcctccacca gtgcacaggc tgtgctgact cagcc
3523538DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 235gcctccacca gtgcacttaa ttttatgctg actcagcc
3823635DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 236gcctccacca gtgcacagrc tgtggtgacy cagga
3523735DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 237gcctccacca gtgcacwgcc tgtgctgact cagcc
3523835DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 238gcctccacca gtgcacaggc agggctgact cagcc
3523930DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 239ctaacactgg gagggggaca ccgtcttctc
3024030DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 240ctaacactgg gagggnctca cngtcttctc
3024141DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 241gcctccacca gtgcacttga catccagwtg acccagtctc c
4124241DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 242gcctccacca gtgcacttga tgttgtgatg actcagtctc c
4124341DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 243gcctccacca gtgcacttga aattgtgwtg acrcagtctc c
4124441DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 244gcctccacca gtgcacttga yatygtgatg acccagwctc c
4124541DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 245gcctccacca gtgcacttga aacgacactc acgcagtctc c
4124641DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 246gcctccacca gtgcacttga aattgtgctg actcagtctc c
4124741DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 247gcctccacca gtgcacttga tattgtgatg acccagactc c
4124848DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 248gcctccaccg ggcgcgcctt attagcagtg tctccggtcg
aagctcct 4824942DNAArtificial SequenceDescription of Artificial
Sequence Synthetic primer 249gcctccaccg ggcgcgcctt attarcartg
yctncgrtcr aa 42250122PRTLama glama 250Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Asp Asp Tyr 20 25 30 Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Thr Ile Ser Trp Asn Gly Gly Ala Thr Tyr Tyr Ala Glu Ser Met 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala Val Tyr
Tyr Cys 85 90 95 Ala Lys Pro Tyr Tyr Ser Asp Tyr Val Gly Val Glu
Tyr Asp Tyr Trp 100 105 110 Gly Gln Gly Thr Gln Val Thr Val Ser Ser
115 120 251127PRTLama glama 251Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met Tyr Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile
Asn Thr Gly Gly Gly Arg Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Ala Lys Gly Thr Ser Ala Asp Gly Ser Ser Trp Tyr Val
Pro Ala Asp 100 105 110 Pro Tyr Asp Tyr Trp Gly Gln Gly Thr Gln Val
Thr Val Ser Ser 115 120 125 252117PRTLama glama 252Glu Val Gln Leu
Val Gln Ser Gly Ala Glu Leu Arg Asn Pro Gly Ala 1 5 10 15 Ser Val
Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30
Tyr Ile Asp Trp Val Arg Gln Ala Pro Gly Gln Gly Leu Glu Trp Met 35
40 45 Gly Arg Ile Asp Pro Glu Asp Gly Gly Thr Lys Tyr Ala Gln Lys
Phe 50 55 60 Gln Gly Arg Val Thr Phe Thr Ala Asp Thr Ser Thr Ser
Thr Ala Tyr 65 70 75 80 Val Glu Leu Ser Ser Leu Arg Ser Glu Asp Thr
Ala Val Tyr Tyr Cys 85 90 95 Ala Arg Ser Gly Arg Tyr Glu Leu Asp
Tyr Trp Gly Gln Gly Thr Gln 100 105 110 Val Thr Val Ser Ser 115
253117PRTLama glama 253Glu Val Gln Leu Val Gln Ser Gly Ala Glu Leu
Arg Asn Pro Gly Ala 1 5 10 15 Ser Val Lys Val Ser Cys Lys Ala Ser
Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Tyr Thr Asp Trp Val Arg Gln
Ala Pro Gly Gln Gly Leu Glu Trp Met 35 40 45 Gly Arg Ile Asp Pro
Glu Asp Gly Asp Thr Lys Tyr Ala Gln Lys Phe 50 55 60 Gln Gly Arg
Val Thr Phe Thr Ala Asp Thr Ser Thr Ser Thr Ala Tyr 65 70 75 80 Val
Glu Leu Thr Ser Leu Arg Ser Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Leu Arg Ser Gly Ala Tyr Glu Leu Asp Tyr Trp Gly Gln Gly Thr Gln
100 105 110 Val Thr Val Ser Ser 115 25498PRTHomo sapiens 254Gln Val
Gln Leu Val Gln Ser Gly Ala Glu Val Lys Lys Pro Gly Ala 1 5 10 15
Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr Gly Tyr 20
25 30 Tyr Met His Trp Val Arg Gln Ala Pro Gly Gln Gly Leu Glu Trp
Met 35 40 45 Gly Arg Ile Asn Pro Asn Ser Gly Gly Thr Asn Tyr Ala
Gln Lys Phe 50 55 60 Gln Gly Arg Val Thr Ser Thr Arg Asp Thr Ser
Ile Ser Thr Ala Tyr 65 70 75 80 Met Glu Leu Ser Arg Leu Arg Ser Asp
Asp Thr Val Val Tyr Tyr Cys 85 90 95 Ala Arg 255116PRTLama glama
255Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly
1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser
Thr Tyr 20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly
Pro Glu Trp Val 35 40 45 Ser Gly Ile Asn Thr Gly Gly Gly Ser Thr
Gly Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg
Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu
Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Asp Trp
Met Ala Thr Thr Pro Trp Gly Gln Gly Thr Gln Val 100 105 110 Thr Val
Ser Ser 115 256116PRTArtificial SequenceDescription of Artificial
Sequence Synthetic Humanized antibody 256Glu Val Gln Leu Leu Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Thr Tyr 20 25 30 Ala Met
Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Gly Ile Asn Thr Gly Gly Gly Ser Thr Gly Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val
Tyr Tyr Cys 85 90 95 Ala Lys Asp Trp Met Ala Thr Thr Pro Trp Gly
Gln Gly Thr Leu Val 100 105 110 Thr Val Ser Ser 115
257116PRTArtificial SequenceDescription of Artificial Sequence
Synthetic Humanized antibody 257Glu Val Gln Leu Leu Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Thr Tyr 20 25 30 Ala Met Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45 Ser Gly Ile
Asn Thr Gly Gly Gly Ser Thr Gly Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Arg Pro Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Ala Lys Asp Trp Met Ala Thr Thr Pro Trp Gly Gln Gly
Thr Gln Val 100 105 110 Thr Val Ser Ser 115 25897PRTHomo sapiens
258Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly
1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Val Ser
Ser Asn 20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly
Leu Glu Trp Val 35 40 45 Ser Val Ile Tyr Ser Gly Gly Ser Thr Tyr
Tyr Ala Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp
Asn Ser Lys Asn Thr Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Arg
Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala 85 90 95 Arg 259111PRTLama
glama 259Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro
Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Thr Ala Ser Gly Phe Thr
Phe Ser Asn Tyr 20 25 30 Trp Met Tyr Trp Val Arg Gln Ala Pro Gly
Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile Asn Ala Ala Gly Ser
Thr Tyr Tyr Ala Asp Ser Val Lys 50 55 60 Gly Arg Phe Thr Ile Ser
Arg Asp Asn Ala Lys Asn Thr Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser
Leu Gln Ser Glu Asp Thr Ala Leu Tyr Tyr Cys Ala 85 90 95 Asn Leu
Pro Arg Trp Gly Gln Gly Thr Gln Val Thr Val Ser Ser 100 105 110
260111PRTArtificial SequenceDescription of Artificial Sequence
Synthetic Humanized antibody 260Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Asn Tyr 20 25 30 Trp Met Tyr Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile
Asn Ala Ala Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys 50 55 60 Gly
Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu 65 70
75 80 Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys
Ala 85 90 95 Asn Leu Pro Arg Trp Gly Gln Gly Thr Leu Val Thr Val
Ser Ser 100 105 110 261111PRTArtificial SequenceDescription of
Artificial Sequence Synthetic Humanized antibody 261Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Asn Tyr 20 25 30
Trp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ala Ile Asn Ala Ala Gly Ser Thr Tyr Tyr Ala Asp Ser Val
Lys 50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr
Leu Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Gln Ser Glu Asp Thr Ala
Val Tyr Tyr Cys Ala 85 90 95 Asn Leu Pro Arg Trp Gly Gln Gly Thr
Gln Val Thr Val Ser Ser 100 105 110 26298PRTHomo sapiens 262Gln Thr
Val Val Thr Gln Glu Pro Ser Phe Ser Val Ser Pro Gly Gly 1 5 10 15
Thr Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Ser Thr Ser 20
25 30 Tyr Tyr Pro Ser Trp Tyr Gln Gln Thr Pro Gly Gln Ala Pro Arg
Thr 35 40 45 Leu Thr Tyr Ser Thr Asn Thr Arg Ser Ser Gly Val Pro
Asp Arg Phe 50 55 60 Ser Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu
Thr Ile Thr Gly Ala 65 70 75 80 Gln Ala Asp Asp Glu Ser Asp Tyr Tyr
Cys Val Leu Tyr Met Gly Ser 85 90 95 Gly Ile 263113PRTLama glama
263Gln Ala Val Val Thr Gln Glu Pro Ser Leu Ser Val Ser Pro Gly Gly
1 5 10 15 Thr Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Thr
Thr Asn 20 25 30 Asn Tyr Pro Gly Trp Phe Gln Gln Thr Pro Gly Gln
Ala Pro Arg Thr 35 40 45 Leu Ile Tyr Asn Thr Asn Asn Arg His Ser
Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser Ile Ser Gly Asn Lys
Ala Ala Leu Thr Ile Thr Gly Ala 65 70 75 80 Gln Pro Glu Asp Glu Ala
Asp Tyr Tyr Cys Ala Leu Tyr Met Ser Ser 85 90 95 Gly Ser Asn Asn
Ala Val Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105 110 Gly
264113PRTArtificial SequenceDescription of Artificial Sequence
Synthetic Humanized antibody 264Gln Thr Val Val Thr Gln Glu Pro Ser
Phe Ser Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr Cys Gly
Leu Ser Ser Gly Ser Val Thr Thr Asn 20 25 30 Asn Tyr Pro Gly Trp
Tyr Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu Ile Tyr
Asn Thr Asn Asn Arg Ser Ser Gly Val Pro Asp Arg Phe 50 55 60 Ser
Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly Ala 65 70
75 80 Gln Ala Asp Asp Glu Ser Asp Tyr Tyr Cys Ala Leu Tyr Met Ser
Ser 85 90 95 Gly Ser Asn Asn Ala Val Phe Gly Gly Gly Thr Lys Leu
Thr Val Leu 100 105 110 Gly 265113PRTArtificial SequenceDescription
of Artificial Sequence Synthetic Humanized antibody 265Gln Thr Val
Val Thr Gln Glu Pro Ser Phe Ser Val Ser Pro Gly Gly 1 5 10 15 Thr
Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Thr Thr Asn 20 25
30 Asn Tyr Pro Gly Trp Phe Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr
35 40 45 Leu Ile Tyr Asn Thr Asn Asn Arg His Ser Gly Val Pro Ser
Arg Phe 50 55 60 Ser Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu Thr
Ile Thr Gly Ala 65 70 75 80 Gln Ala Asp Asp Glu Ser Asp Tyr Tyr Cys
Ala Leu Tyr Met Ser Ser 85 90 95 Gly Ser Asn Asn Ala Val Phe Gly
Gly Gly Thr Lys Leu Thr Val Leu 100 105 110 Gly 266113PRTLama glama
266Gln Thr Val Val Thr Gln Glu Pro Ser Leu Ser Val Ser Pro Gly Gly
1 5
10 15 Thr Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Thr Ser
Gly 20 25 30 Asn Tyr Pro Gly Trp Tyr Gln Gln Lys Pro Gly Gln Ala
Pro Arg Thr 35 40 45 Leu Ile Tyr Asn Thr Asn Ser Arg Tyr Ser Gly
Val Pro Asn Arg Phe 50 55 60 Ser Gly Ser Ile Ser Gly Asn Lys Ala
Ala Leu Thr Ile Thr Gly Ala 65 70 75 80 Gln Pro Glu Asp Glu Ala Asp
Tyr Tyr Cys Ala Val Tyr Ile Gly Ser 85 90 95 Ser Ser Tyr Pro Val
Val Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105 110 Gly
267113PRTArtificial SequenceDescription of Artificial Sequence
Synthetic Humanized antibody 267Gln Thr Val Val Thr Gln Glu Pro Ser
Phe Ser Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr Cys Gly
Leu Ser Ser Gly Ser Val Thr Ser Gly 20 25 30 Asn Tyr Pro Gly Trp
Tyr Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu Ile Tyr
Asn Thr Asn Ser Arg Ser Ser Gly Val Pro Asp Arg Phe 50 55 60 Ser
Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly Ala 65 70
75 80 Gln Ala Asp Asp Glu Ser Asp Tyr Tyr Cys Ala Val Tyr Ile Gly
Ser 85 90 95 Ser Ser Tyr Pro Val Val Phe Gly Gly Gly Thr Lys Leu
Thr Val Leu 100 105 110 Gly 268113PRTArtificial SequenceDescription
of Artificial Sequence Synthetic Humanized antibody 268Gln Thr Val
Val Thr Gln Glu Pro Ser Phe Ser Val Ser Pro Gly Gly 1 5 10 15 Thr
Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Thr Ser Gly 20 25
30 Asn Tyr Pro Gly Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Arg Thr
35 40 45 Leu Ile Tyr Asn Thr Asn Ser Arg Ser Ser Gly Val Pro Asp
Arg Phe 50 55 60 Ser Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu Thr
Ile Thr Gly Ala 65 70 75 80 Gln Pro Asp Asp Glu Ser Asp Tyr Tyr Cys
Ala Val Tyr Ile Gly Ser 85 90 95 Ser Ser Tyr Pro Val Val Phe Gly
Gly Gly Thr His Leu Thr Val Leu 100 105 110 Gly 26996PRTHomo
sapiens 269Gln Val Gln Leu Val Gln Ser Gly Ala Glu Val Lys Lys Pro
Gly Ala 1 5 10 15 Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr
Phe Thr Ser Tyr 20 25 30 Tyr Met His Trp Val Arg Gln Ala Pro Gly
Gln Gly Leu Glu Trp Met 35 40 45 Gly Ile Ile Asn Pro Ser Gly Gly
Ser Thr Ser Tyr Ala Gln Lys Phe 50 55 60 Gln Gly Arg Val Thr Met
Thr Arg Asp Thr Ser Thr Ser Thr Val Tyr 65 70 75 80 Met Glu Leu Ser
Ser Leu Arg Ser Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95
27096PRTLama pacos 270Glu Val Gln Leu Val Gln Pro Gly Ala Glu Leu
Arg Asn Pro Gly Ala 1 5 10 15 Ser Val Lys Val Ser Cys Lys Ala Ser
Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Tyr Ile Asp Trp Val Arg Gln
Ala Pro Gly Gln Gly Leu Glu Trp Met 35 40 45 Gly Arg Ile Asp Pro
Glu Asp Gly Gly Thr Lys Tyr Ala Gln Lys Phe 50 55 60 Gln Gly Arg
Val Thr Phe Thr Ala Asp Thr Ser Thr Ser Thr Ala Tyr 65 70 75 80 Val
Glu Leu Ser Ser Leu Arg Ser Glu Gly Thr Ala Val Tyr Tyr Cys 85 90
95 27196PRTLama pacos 271Glu Val Gln Leu Val Gln Pro Gly Ala Glu
Leu Arg Lys Pro Gly Ala 1 5 10 15 Ser Val Lys Val Ser Cys Lys Ala
Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Tyr Ile Asp Trp Val Arg
Gln Ala Pro Gly Gln Gly Leu Glu Trp Met 35 40 45 Gly Arg Ile Asp
Pro Glu Asp Gly Gly Thr Lys Tyr Ala Gln Lys Phe 50 55 60 Gln Gly
Arg Val Thr Phe Thr Ala Asp Thr Ser Thr Ser Thr Ala Tyr 65 70 75 80
Val Glu Leu Ser Ser Leu Arg Ser Glu Gly Thr Pro Val Tyr Tyr Cys 85
90 95 27296PRTLama pacos 272Glu Val Gln Leu Val Gln Pro Gly Ala Glu
Leu Arg Lys Pro Gly Ala 1 5 10 15 Ser Leu Lys Val Ser Cys Lys Ala
Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Tyr Ile Asp Trp Val Arg
Gln Ala Pro Gly Gln Gly Leu Glu Trp Met 35 40 45 Gly Arg Ile Asp
Pro Glu Asp Gly Gly Thr Lys Tyr Ala Gln Lys Phe 50 55 60 Gln Gly
Arg Val Thr Phe Thr Ala Asp Thr Ser Thr Arg Thr Ala Tyr 65 70 75 80
Val Glu Leu Ser Ser Leu Arg Ser Glu Gly Thr Ala Val Tyr Tyr Cys 85
90 95 27396PRTLama pacos 273Glu Val Gln Leu Val Gln Pro Gly Ala Glu
Leu Arg Lys Pro Gly Ala 1 5 10 15 Ser Leu Lys Val Ser Cys Lys Ala
Ser Gly Tyr Thr Phe Thr Ser Tyr 20 25 30 Tyr Ile Asp Trp Val Arg
Gln Ala Pro Gly Gln Gly Leu Glu Trp Met 35 40 45 Gly Arg Ile Asp
Pro Glu Asp Gly Gly Thr Lys Tyr Ala Gln Lys Phe 50 55 60 Gln Gly
Arg Val Thr Phe Thr Ala Asp Thr Ser Thr Ser Thr Ala Tyr 65 70 75 80
Val Glu Leu Ser Ser Leu Arg Ser Glu Gly Thr Ala Val Tyr Tyr Cys 85
90 95 27496PRTLama pacosMOD_RES(38)..(38)Any amino acid 274Glu Val
Gln Leu Val Gln Pro Gly Ala Glu Leu Arg Lys Pro Gly Ala 1 5 10 15
Ser Val Lys Val Ser Cys Lys Ala Ser Gly Tyr Thr Phe Thr Ser Tyr 20
25 30 Tyr Ile Asp Trp Val Xaa Gln Ala Pro Gly Gln Gly Leu Glu Trp
Met 35 40 45 Gly Arg Ile Asp Pro Glu Asp Gly Gly Thr Asn Tyr Ala
Gln Lys Phe 50 55 60 Gln Gly Arg Val Thr Phe Thr Ala Asp Thr Ser
Thr Ser Thr Ala Tyr 65 70 75 80 Val Glu Leu Ser Ser Leu Arg Ser Glu
Gly Thr Ala Val Tyr Tyr Cys 85 90 95 27596PRTHomo sapiens 275Glu
Val Gln Leu Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ser Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 27696PRTLama pacos 276Glu
Val Gln Val Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Asp Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Ser Trp Asn Gly Gly Ser Thr Tyr Tyr
Ala Glu Ser Met 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ser
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 27796PRTLama pacos 277Gln
Leu Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Asp Asp Tyr
20 25 30 Gly Met Ser Trp Val Arg His Ser Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Ser Trp Asn Gly Gly Ser Thr Tyr Tyr
Ala Glu Ser Met 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 27896PRTLama pacos 278Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 27996PRTLama pacos 279Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Gly Ser Tyr
20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28096PRTLama pacos 280Gln
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Ala Gly Gly 1 5 10
15 Ser Leu Lys His Ser Cys Ala Ala Ser Gly Leu Thr Phe Gly Ser Tyr
20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28196PRTLama pacos 281Gln
Leu Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Val Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Asn Thr Gly Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28296PRTLama pacos 282Gln
Leu Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Val Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Thr Ile Asn Thr Gly Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28396PRTLama pacos 283Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Asp Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 28496PRTLama pacos 284Gln
Leu Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Ser Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28596PRTLama pacos 285Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Ser Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28696PRTLama pacos 286Gln
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg His Ser Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Ser Tyr
Ala Asp Ser Met 50 55 60 Lys Gly Gln Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28796PRTLama pacos 287Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Ala Ile Asn Gly Gly Asp Gly Ser Thr Ser Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Ser Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 28896PRTHomo sapiens
288Glu Val Gln Leu Leu Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly
1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser
Ser Tyr 20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly
Leu Glu Trp Val 35 40 45 Ser Val Ile Tyr Ser Gly Gly Ser Ser Thr
Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala
Val Tyr Tyr Cys 85 90 95 28996PRTLama pacos 289Glu Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ser 20 25 30 Ala
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ser Ile Tyr Ser Tyr Ser Ser Asn Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Thr Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala
Val Tyr Tyr Cys 85 90 95 29096PRTLama pacos 290Glu Val Arg Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ser 20 25 30 Ala
Met Ser Arg Val Arg Gln Val Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ser Ile Tyr Ser Tyr Ser Ser Asn Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Thr Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Gly Thr Ala
Val Tyr Tyr Cys 85 90 95 29196PRTLama pacos 291Gln Val Gln Leu Val
Glu Ser Val Gly Gly Leu Val Gln Asp Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Arg Thr Phe Ser Ser Ser 20 25 30 Ala
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Ser Ile Tyr Ser Tyr Ser Ser Asn Thr Tyr Asn Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala
Val Tyr Tyr Cys 85 90 95 29296PRTLama pacos 292Gln Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Ala Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Leu Thr Phe Ser Ser Tyr 20 25 30 Ala
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Ser Val 35 40
45 Ser Thr Ile Asn Ser Asp Gly Ser Asn Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Asp Gly Thr Ala
Val Tyr Tyr Cys 85 90 95 29396PRTLama pacos 293Gln Val Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Leu Thr Phe Ser Ser Tyr 20 25 30 Tyr
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Asp Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Glu Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala
Val Tyr Tyr Cys 85 90 95 29496PRTLama pacos 294Gln Val Gln Leu Val
Glu Thr Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ser 20 25 30 Ala
Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Asp Thr Tyr Tyr Ala Asp Ser Val
50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr
Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala
Val Tyr Tyr Cys 85 90 95 29595PRTLama pacos 295Gln Leu Gln Leu Val
Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala
Met Gly Trp Ala Arg Gln Val Pro Gly Lys Gly Leu Glu Trp Val 35 40
45 Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys
50 55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Ser Glu Gly Thr Ala Val
Tyr Tyr Cys 85 90 95 29695PRTLama pacos 296Gln Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met
Gly Trp Ala Arg Gln Val Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys 50
55 60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr
Leu 65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 29795PRTLama pacos 297Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Asp Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Gly Ile Tyr Ser Asp Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys 50 55
60 Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr Leu
65 70 75 80 Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr Tyr
Cys 85 90 95 29896PRTLama pacos 298Glu Val Gln Leu Val Glu Ser Gly
Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys
Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser Trp
Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Ser Val 35 40 45 Ser Ser
Ile Tyr Ser Tyr Ser Ser Asn Thr Tyr Tyr Ala Asp Ser Val 50 55 60
Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65
70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Asp Met Ala Val Tyr
Tyr Cys 85 90 95 29996PRTLama pacos 299Gln Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Ser Val 35 40 45 Ser
Ser Ile Tyr Ser Tyr Ser Ser Asn Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30096PRTLama pacos 300Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Leu Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Ser Val 35 40 45 Ser
Thr Ile Tyr Ser Tyr Gly Gly Asn Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30196PRTLama pacos 301Gln Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Asp Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45 Ser
Asp Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30296PRTLama pacos 302Gln Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Leu Gly Ser Tyr 20 25 30 Asp Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45 Ser
Cys Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30396PRTLama pacos 303Gln Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Gly Ser Tyr 20 25 30 Asp Met Ser
Trp Val Arg Arg Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Tyr Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30496PRTLama pacos 304Glu Val Gln Val Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Tyr Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr
Tyr Cys 85 90 95 30596PRTLama pacos 305Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Asp Asn Tyr 20 25 30 Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Tyr Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30696PRTLama pacos 306Gln Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser
Trp Val Arg Arg Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Tyr Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30796PRTLama pacos 307Gln Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Asp Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val Tyr
Tyr Cys 85 90 95 30896PRTHomo sapiens 308Glu Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met
His Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Val Trp Val 35 40 45
Ser Arg Ile Asn Ser Asp Gly Ser Ser Thr Ser Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val
Tyr Tyr Cys 85 90 95 30996PRTLama pacos 309Gln Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met
Asn Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Gly Ile Tyr Ser Asp Gly Ser Asp Thr Tyr Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val
Tyr Tyr Cys 85 90 95 31096PRTLama pacos 310Gln Val Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met
Asn Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Ser Tyr Ala Asp Ser Met 50
55 60 Lys Gly Gln Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr Ala Val
Tyr Tyr Cys 85 90 95 31196PRTLama pacos 311Gln Leu Gln Leu Val Glu
Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu
Ser Cys Ala Ala Ser Gly Phe Thr Phe Gly Ser Tyr 20 25 30 Trp Met
Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45
Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Ser Tyr Ala Asp Ser Met 50
55 60 Lys Gly Gln Phe Thr Ile Ser Ser Asp Asn Ala Arg Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr
Ala Val Tyr Tyr Cys 85 90 95 31296PRTLama pacos 312Glu Val Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Gly Ser Tyr 20 25 30
Val Leu Ser Trp Val Cys His Ser Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ala Ile Asn Ser Cys Gly Gly Ser Thr Ser Tyr Ala Asp Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr
Ala Val Tyr Tyr Cys 85 90 95 31396PRTLama pacos 313Gln Leu Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30
Trp Met Asn Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35
40 45 Ser Ala Ile Asn Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Gly Thr
Ala Val Tyr Tyr Cys 85 90 95 31497PRTHomo sapiens 314Gln Leu Gln
Leu Gln Glu Ser Gly Ser Gly Leu Val Lys Pro Ser Gln 1 5 10 15 Thr
Leu Ser Leu Thr Cys Ala Val Ser Gly Gly Ser Ile Ser Ser Gly 20 25
30 Gly Tyr Ser Trp Ser Trp Ile Arg Gln Pro Pro Gly Lys Gly Leu Glu
35 40 45 Trp Ile Gly Ser Ile Tyr Tyr Ser Gly Ser Thr Tyr Tyr Asn
Pro Ser 50 55 60 Leu Lys Ser Arg Val Thr Ile Ser Val Asp Thr Ser
Lys Asn Gln Phe 65 70 75 80 Ser Leu Lys Leu Ser Ser Val Thr Ala Ala
Asp Thr Ala Val Tyr Tyr 85 90 95 Cys 31596PRTLama pacos 315Gln Val
Gln Leu Gln Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Gln 1 5 10 15
Thr Leu Ser Leu Thr Cys Ala Val Tyr Gly Gly Ser Ile Thr Thr Ser 20
25 30 Cys Tyr Ala Trp Ser Cys Ile Cys Gln Pro Pro Glu Lys Gly Leu
Glu 35 40 45 Trp Met Ala Ala Ile Tyr Ser Gly Ser Thr Tyr Tyr Ser
Pro Ser Leu 50 55 60 Lys Ser His Thr Ser Ile Ser Arg Asp Thr Ser
Lys Asn Gln Phe Ser 65 70 75 80 Leu Gln Leu Ser Ser Val Thr Pro Glu
Gly Thr Ala Val Tyr Tyr Cys 85 90 95 31697PRTHomo sapiens 316Gln
Val Gln Leu Gln Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Gln 1 5 10
15 Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Ile Ser Ser Gly
20 25 30 Asp Tyr Tyr Trp Ser Trp Ile Arg Gln Pro Pro Gly Lys Gly
Leu Glu 35 40 45 Trp Ile Gly Tyr Ile Tyr Tyr Ser Gly Ser Thr Tyr
Tyr Asn Pro Ser 50 55 60 Leu Lys Ser Arg Val Thr Ile Ser Val Asp
Thr Ser Lys Asn Gln Phe 65 70 75 80 Ser Leu Lys Leu Ser Ser Val Thr
Ala Ala Asp Thr Ala Val Tyr Tyr 85 90 95 Cys 31797PRTLama pacos
317Glu Val Gln Leu Gln Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Gln
1 5 10 15 Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Ile Thr
Thr Ser 20 25 30 Tyr Tyr Ala Trp Ser Trp Ile Arg Gln Pro Pro Gly
Lys Gly Leu Glu 35 40 45 Trp Met Gly Ala Ile Ala Tyr Ser Gly Ser
Thr Tyr Tyr Ser Pro Ser 50 55 60 Leu Lys Ser Arg Thr Ser Ile Ser
Arg Asp Thr Ser Asn Asn Gln Phe 65 70 75 80 Ser Leu Gln Leu Ser Ser
Val Thr Pro Glu Gly Thr Ala Val Tyr Tyr 85 90 95 Cys 31897PRTLama
pacos 318Glu Val Gln Val Gln Glu Ser Gly Pro Gly Leu Val Lys Pro
Ser Gln 1 5 10 15 Ala Leu Ser Leu Thr Cys Thr Ala Ser Gly Gly Ser
Asn Thr Thr Ser 20 25 30 Tyr Tyr Ala Trp Ser Trp Ile Arg Gln Pro
Pro Gly Lys Gly Leu Glu 35 40 45 Trp Met Gly Ala Ile Ala Tyr Ser
Gly Ser Thr Tyr Tyr Ser Pro Ser 50 55 60 Leu Lys Ser Arg Thr Ser
Ile Ser Arg Asp Thr Ser Asn Asn Gln Phe 65 70 75 80 Ser Leu Gln Leu
Ser Ser Val Thr Pro Glu Gly Thr Ala Val Tyr Tyr 85 90 95 Cys
31997PRTLama pacos 319Gln Val Gln Arg Gln Glu Ser Gly Pro Gly Leu
Val Lys Pro Ser Gln 1 5 10 15 Met Leu Ser Leu Thr Cys Thr Ala Ser
Gly Gly Ser Asn Thr Thr Ser 20 25 30 Tyr Tyr Ala Trp Ser Trp Ile
Arg Gln Pro Pro Gly Lys Gly Leu Glu 35 40 45 Trp Met Gly Ala Ile
Ala Tyr Asp Gly Ser Thr Tyr Tyr Ser Pro Ser 50 55 60 Leu Lys Ser
His Thr Ser Ile Ser Arg Asp Thr Ser Lys Asn Gln Phe 65 70 75 80 Ser
Leu Gln Leu Ser Ser Val Thr Pro Glu Gly Thr Ala Val Tyr Tyr 85 90
95 Cys 32097PRTLama pacos 320Gln Val Gln Leu Gln Glu Ser Gly Pro
Gly Leu Val Lys Pro Ser Gln 1 5 10 15 Thr Leu Ser Leu Thr Cys Thr
Val Ser Gly Gly Ser Ile Thr Thr Ser 20 25 30 Tyr Tyr Tyr Trp Ser
Trp Ile Arg Gln Pro Pro Gly Lys Gly Leu Glu 35 40 45 Trp Met Gly
Ala Ile Ala Tyr Asp Gly Ser Thr Tyr Tyr Ser Pro Ser 50 55 60 Leu
Lys Ser Arg Thr Ser Ile Ser Arg Asp Thr Ser Lys Asn Gln Phe 65 70
75 80 Ser Leu Gln Leu Ser Ser Val Thr Pro Glu Gly Thr Ala Val Tyr
Tyr 85 90 95 Cys 32197PRTLama pacos 321Glu Val Gln Leu Gln Glu Ser
Gly Pro Gly Leu Leu Lys Pro Ser Gln 1 5 10 15 Thr Leu Ser Leu Thr
Cys Ala Val Tyr Gly Gly Ser Ile Thr Thr Ser 20 25 30 Tyr Tyr Tyr
Trp Ser Trp Ile Arg Gln Pro Pro Gly Lys Gly Leu Glu 35 40 45 Trp
Met Gly Ala Ile Ala Tyr Asp Gly Ser Thr Tyr Tyr Ser Pro Ser 50 55
60 Leu Lys Ser His Thr Ser Ile Ser Arg Asp Thr Ser Lys Asn Gln Phe
65 70 75 80 Ser Leu Gln Leu Ser Ser Val Thr Pro Glu Gly Thr Ala Val
Tyr Tyr 85 90 95 Cys 32296PRTLama pacosMOD_RES(49)..(49)Any amino
acid 322Gln Val Gln Leu Gln Glu Ser Gly Pro Asp Leu Val Lys Pro Ser
Gln 1 5 10 15 Met Leu Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Asn
Thr Thr Ser 20 25 30 Tyr Tyr Ala Trp Ser Trp Ile Arg Gln Pro Pro
Gly Lys Gly Leu Glu 35 40 45 Xaa Met Gly Ala Ile Tyr Ser Gly Ser
Thr Tyr Tyr Ser Pro Ser Leu 50 55 60 Lys Ser Arg Thr Ser Ile Ser
Arg Asp Thr Ser Lys Asn Gln Phe Ser 65 70 75 80 Leu Gln Leu Ser Ser
Val Thr Pro Glu Gly Thr Ala Val Tyr Tyr Cys 85 90 95 32396PRTLama
pacos 323Gln Val Gln Leu Gln Glu Ser Gly Pro Gly Leu Val Lys Pro
Ser Gln 1 5 10 15 Thr Leu Ser Leu Thr Cys Thr Ala Ser Gly Gly Ser
Asn Thr Thr Ser 20 25 30 Tyr Tyr Ala Trp Ser Trp Ile Arg Gln Pro
Pro Gly Lys Gly Leu Glu 35 40 45 Trp Met Gly Ala Ile Tyr Ser Gly
Ser Thr Tyr Tyr Ser Pro Ser Leu 50 55 60 Lys Ser Arg Thr Ser Ile
Ser Arg Asp Thr Ser Asn Asn Gln Phe Ser 65 70 75 80 Leu Gln Leu Ser
Ser Val Thr Pro Glu Gly Thr Cys Val Tyr Tyr Cys 85 90 95
32495PRTLama pacosMOD_RES(48)..(48)Any amino acid 324Gln Val Gln
Leu Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Gln Thr 1 5 10 15 Leu
Ser Leu Thr Cys Thr Val Ser Gly Gly Ser Ile Thr Thr Ser Cys 20 25
30 Tyr Ala Trp Ser Trp Ile His Gln Pro Pro Gly Lys Gly Leu Glu Xaa
35 40 45 Met Gly Ala Ile Tyr Ser Gly Ser Thr Tyr Tyr Ser Pro Ser
Leu Lys 50 55 60 Ser His Thr Ser Ile Ser Arg Asp Thr Ser Lys Asn
Gln Phe Ser Leu 65 70 75 80 Gln Leu Ser Ser Val Thr Pro Glu Gly Thr
Ala Val Tyr Tyr Cys 85 90 95 32596PRTLama pacos 325Glu Val Gln Leu
Gln Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Gln 1 5 10 15 Met Leu
Ser Leu Thr Cys Thr Leu Ser Gly Asp Ser Ile Thr Thr Ser 20 25 30
Cys Tyr Ala Trp Ser Trp Ile Arg Gln Pro Pro Gly Lys Gly Leu Glu 35
40 45 Trp Met Gly Ala Ile Tyr Ser Gly Ser Thr Tyr Tyr Ser Pro Ser
Leu 50 55 60 Lys Ser Arg Thr Ser Ile Ser Arg Asp Thr Ser Lys Asn
Gln Phe Ser 65 70 75 80 Leu Gln Leu Ser Ser Val Thr Pro Glu Gly Thr
Ala Val Tyr Tyr Cys 85 90 95 32698PRTHomo sapiens 326Glu Val Gln
Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser
Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25
30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val
35 40 45 Ser Ala Ile Ser Gly Ser Gly Gly Ser Thr Tyr Tyr Ala Asp
Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys
Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Arg Ala Glu Asp
Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Lys 327107PRTLama glama 327Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Gly Arg Tyr
20 25 30 Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu
Trp Val 35 40 45 Ser Ala Ile Ser Trp Asn Ser Gly Arg Ile Tyr Asp
Ala Glu Ser Met 50 55 60 Lys Gly Arg Phe Thr Val Ser Arg Asp Asn
Thr Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ala Leu Lys Thr
Asp Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Ala Arg Ser Thr Ala Glu
Ser Asn Trp Ile Pro 100 105 328102PRTLama glama 328Glu Val Gln Leu
Val Gln Ser Gly Gly Gly Leu Val Gln His Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Ala Phe Ser Ser Ala 20 25 30
Gly Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Gly Val 35
40 45 Ser Ala Ile Asn Thr Arg Ser Gly Thr Thr Tyr Tyr Ala Asp Phe
Thr 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Val Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr
Ala Val Tyr Tyr Cys 85 90 95 Asn Ala Gly Phe Pro Ser 100
329107PRTLama glama 329Glu Glu Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Thr Phe Gly Ser Tyr 20 25 30 Asp Met Tyr Trp Val Arg Gln
Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45 Ser Ala Ile Arg Ser
Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Ala Lys Pro Ser Thr Ile Ala Thr Ile Leu Phe 100 105
330111PRTLama glama 330Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Ser Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ser Ile Tyr Ser
Asp Gly Ser Tyr Thr Tyr Tyr Ala Asp Ser Val 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Ala Asn Trp Asp Tyr Ser Gly Ser Tyr Tyr Ala Pro Ala Thr Phe 100
105 110 331101PRTLama glama 331Glu Val Gln Leu Val Glu Ser Gly Gly
Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala
Ala Ser Gly Phe Thr Phe Ser Ser Ala 20 25 30 Val Met Ser Trp Val
Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile
Gly Ser Gly Gly Ser Thr Thr Ser Tyr Ala Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr
Cys 85 90 95 Thr Gly Arg Gly Phe 100 332101PRTLama glama 332Glu Val
Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ala 20
25 30 Val Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp
Val 35 40 45 Ser Thr Ile Gly Ala Ala Gly Ser Thr Thr Ser Tyr Ala
Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala
Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu
Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Thr Gly Arg Gly Phe 100
33396PRTHomo sapiens 333Ser Tyr Glu Leu Thr Gln Pro Pro Ser Val Ser
Val Ser Pro Gly Gln 1 5 10 15 Thr Ala Arg Ile Thr Cys Ser Gly Asp
Ala Leu Pro Lys Gln Tyr Ala 20 25 30 Tyr Trp Tyr Gln Gln Lys Pro
Gly Gln Ala Pro Val Leu Val Ile Tyr 35 40 45 Lys Asp Ser Glu Arg
Pro Ser Gly Ile Pro Glu Arg Phe Ser Gly Ser 50 55 60 Ser Ser Gly
Thr Thr Val Thr Leu Thr Ile Ser Gly Val Gln Ala Glu 65 70 75 80 Asp
Glu Ala Asp Tyr Tyr Cys Gln Ser Ala Asp Ser Ser Gly Thr Tyr 85 90
95 334107PRTLama glama 334Asn Phe Met Leu Thr Gln Pro Ser Ala Leu
Ser Val Thr Leu Gly Gln 1 5 10 15 Thr Ala Lys Ile Thr Cys Gln Gly
Gly Ser Leu Gly Ser Ser Tyr Ala 20 25 30
His Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Val Leu Val Ile Tyr 35
40 45 Asp Asp Asp Ser Arg Pro Ser Gly Ile Pro Glu Arg Phe Ser Gly
Ser 50 55 60 Ser Ser Gly Gly Arg Ala Thr Leu Thr Ile Ser Gly Ala
Gln Ala Glu 65 70 75 80 Asp Glu Gly Asp Tyr Tyr Cys Gln Ser Ala Asp
Ser Ser Gly Asn Ala 85 90 95 Val Phe Gly Gly Gly Thr His Leu Thr
Val Leu 100 105 335104PRTHomo sapiens 335Gln Pro Val Leu Thr Gln
Pro Pro Ser Ser Ser Ala Ser Pro Gly Glu 1 5 10 15 Ser Ala Arg Leu
Thr Cys Thr Leu Pro Ser Asp Ile Asn Val Gly Ser 20 25 30 Tyr Asn
Ile Tyr Trp Tyr Gln Gln Lys Pro Gly Ser Pro Pro Arg Tyr 35 40 45
Leu Leu Tyr Tyr Tyr Ser Asp Ser Asp Lys Gly Gln Gly Ser Gly Val 50
55 60 Pro Ser Arg Phe Ser Gly Ser Lys Asp Ala Ser Ala Asn Thr Gly
Ile 65 70 75 80 Leu Leu Ile Ser Gly Leu Gln Ser Glu Asp Glu Ala Asp
Tyr Tyr Cys 85 90 95 Met Ile Trp Pro Ser Asn Ala Ser 100
336117PRTLama glama 336Gln Ala Val Leu Thr Gln Pro Pro Ser Leu Ser
Ala Ser Pro Gly Ser 1 5 10 15 Ser Val Arg Leu Thr Cys Thr Leu Ser
Ser Gly Asn Ser Val Gly Ser 20 25 30 Tyr Asp Ile Ser Trp Tyr Gln
Gln Lys Ala Gly Ser Pro Pro Arg Tyr 35 40 45 Leu Leu Tyr Tyr Tyr
Ser Asp Ser Phe Asn His Gln Gly Ser Gly Val 50 55 60 Pro Ser Arg
Phe Ser Gly Ser Lys Asp Ala Ser Ala Asn Ala Gly Leu 65 70 75 80 Leu
Leu Ile Ser Gly Leu Gln Pro Glu Asp Glu Ala Asp Tyr Tyr Cys 85 90
95 Ser Ala Tyr Lys Ser Gly Ser Tyr Asn Pro Thr Phe Gly Gly Gly Thr
100 105 110 Lys Leu Thr Val Leu 115 33798PRTHomo sapiens 337Gln Thr
Val Val Thr Gln Glu Pro Ser Phe Ser Val Ser Pro Gly Gly 1 5 10 15
Thr Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Ser Thr Ser 20
25 30 Tyr Tyr Pro Ser Trp Tyr Gln Gln Thr Pro Gly Gln Ala Pro Arg
Thr 35 40 45 Leu Ile Tyr Ser Thr Asn Thr Arg Ser Ser Gly Val Pro
Asp Arg Phe 50 55 60 Ser Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu
Thr Ile Thr Gly Ala 65 70 75 80 Gln Ala Asp Asp Glu Ser Asp Tyr Tyr
Cys Val Leu Tyr Met Gly Ser 85 90 95 Gly Ile 338112PRTLama glama
338Gln Ala Val Val Thr Gln Glu Pro Ser Leu Ser Val Ser Pro Gly Gly
1 5 10 15 Thr Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Thr
Ser Ser 20 25 30 Asn Tyr Pro Gly Trp Tyr Gln Gln Lys Pro Gly Gln
Ala Pro Arg Thr 35 40 45 Leu Ile Tyr Asn Thr Asn Ser Arg Tyr Ser
Gly Val Pro Asn Arg Phe 50 55 60 Ser Gly Ser Ile Ser Gly Asn Lys
Ala Val Leu Thr Ile Thr Gly Ala 65 70 75 80 Gln Pro Glu Asp Glu Ala
Asp Tyr Tyr Cys Ala Val Tyr Thr Gly Ser 85 90 95 Ser Asn Tyr Pro
Ala Val Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105 110
339110PRTLama glama 339Gln Ala Val Val Thr Gln Glu Pro Ser Leu Ser
Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr Cys Gly Leu Ser
Ser Gly Ser Val Thr Thr Ser 20 25 30 Asn Tyr Ala Ala Trp Phe Gln
Gln Ala Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu Ile Tyr Lys Thr
Asn Ser Arg His Ser Gly Val Pro Ser Arg Phe 50 55 60 Ser Gly Ser
Ile Ser Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly Ala 65 70 75 80 Gln
Pro Glu Asp Glu Ala Asp Tyr Tyr Cys Ser Leu Tyr Pro Gly Ser 85 90
95 Asp Ile Ser Val Phe Gly Gly Gly Thr His Leu Thr Val Leu 100 105
110 340112PRTLama glama 340Ser Ser Glu Leu Thr Gln Glu Pro Ser Leu
Ser Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr Cys Gly Leu
Ser Ser Gly Ser Val Thr Ser Ser 20 25 30 Asn Tyr Pro Gly Trp Tyr
Gln Gln Lys Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu Ile Tyr Asn
Thr Asn Ser Arg Tyr Ser Gly Val Pro Asn Arg Phe 50 55 60 Ser Gly
Ser Ile Ser Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly Ala 65 70 75 80
Gln Pro Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Val Tyr Ile Gly Ser 85
90 95 Gly Gly Tyr Pro Pro Val Phe Gly Gly Gly Thr Lys Leu Thr Val
Leu 100 105 110 341110PRTLama glama 341Ser Tyr Glu Leu Thr Gln Asp
Pro Ser Leu Ser Val Ser Pro Gly Glu 1 5 10 15 Thr Val Thr Leu Thr
Cys Gly Leu Asn Ser Gly Ser Val Thr Ser His 20 25 30 Asn Tyr Pro
Ala Trp Tyr Gln Gln Lys Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu
Met Tyr Asn Thr Asn Ser Arg Tyr Pro Met Val Pro Pro Arg Phe 50 55
60 Ser Gly Ser Ile Phe Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly Ala
65 70 75 80 Gln Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Ala Val Tyr Ile
Arg Ser 85 90 95 Arg Thr Leu Glu Phe Gly Gly Gly Thr His Leu Thr
Val Leu 100 105 110 342100PRTHomo sapiens 342Asp Ile Val Met Thr
Gln Thr Pro Leu Ser Leu Ser Val Thr Pro Gly 1 5 10 15 Gln Pro Ala
Ser Ile Ser Cys Lys Ser Ser Gln Ser Leu Leu His Ser 20 25 30 Asp
Gly Lys Thr Tyr Leu Tyr Trp Tyr Leu Gln Lys Pro Gly Gln Ser 35 40
45 Pro Gln Leu Leu Ile Tyr Glu Val Ser Asn Arg Phe Ser Gly Val Pro
50 55 60 Asp Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu
Lys Ile 65 70 75 80 Ser Arg Val Glu Ala Glu Asp Val Gly Val Tyr Tyr
Cys Met Gln Ser 85 90 95 Ile Gln Leu Pro 100 343111PRTLama glama
343Asp Ile Val Met Thr Gln Thr Pro Gly Ser Leu Ser Val Val Pro Gly
1 5 10 15 Glu Ser Ala Ser Ile Ser Cys Lys Ala Ser Gln Ser Leu Val
His Ser 20 25 30 Asp Gly Lys Thr Tyr Leu Tyr Trp Leu Leu Gln Lys
Pro Gly Gln Ser 35 40 45 Pro Gln Arg Leu Ile Tyr Gln Val Ser Asn
Arg Gly Ser Gly Val Pro 50 55 60 Asp Arg Phe Thr Gly Ser Gly Ser
Gly Thr Asp Phe Thr Leu Lys Ile 65 70 75 80 Ser Gly Val Lys Ala Glu
Asp Ala Gly Val Tyr Tyr Cys Ala Gln Ala 85 90 95 Thr Tyr Tyr Val
Thr Phe Gly Gln Gly Thr Lys Val Glu Leu Lys 100 105 110
344113PRTLama glama 344Asp Ile Val Met Thr Gln Thr Pro Gly Ser Leu
Ser Val Val Pro Gly 1 5 10 15 Glu Ser Ala Ser Ile Ser Cys Lys Ala
Ser Gln Ser Leu Val His Ser 20 25 30 Asp Gly Lys Thr Tyr Leu Tyr
Trp Leu Leu Gln Lys Pro Gly Gln Ser 35 40 45 Pro Gln Arg Leu Ile
Tyr Gln Val Ser Asn Arg Gly Ser Gly Val Pro 50 55 60 Asp Arg Phe
Thr Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Lys Ile 65 70 75 80 Ser
Gly Val Lys Ala Glu Asp Ala Gly Val Tyr Tyr Cys Ala Gln Ala 85 90
95 Ser Tyr Tyr Pro Pro Leu Thr Phe Gly Gln Gly Thr Lys Val Glu Leu
100 105 110 Lys 345111PRTLama glama 345Asp Ile Val Met Thr Gln Thr
Pro Gly Ser Leu Ser Val Val Pro Gly 1 5 10 15 Glu Ser Ala Ser Ile
Ser Cys Lys Ala Ser Gln Ser Leu Val Leu Ser 20 25 30 Gly Gly Lys
Thr Tyr Leu Tyr Trp Leu Leu Gln Lys Pro Gly Gln Ser 35 40 45 Pro
Gln Arg Leu Ile Tyr Gln Val Ser Asn Arg Gly Ser Gly Val Pro 50 55
60 Asp Arg Phe Thr Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Lys Ile
65 70 75 80 Ser Gly Val Lys Ala Glu Asp Ala Gly Val Tyr Tyr Cys Thr
Gln Ala 85 90 95 Thr Tyr Tyr Ile Thr Phe Gly Lys Gly Thr Arg Leu
Glu Ile Lys 100 105 110 346109PRTLama glama 346Glu Ile Val Leu Thr
Thr Pro Gly Ser Leu Ser Val Val Pro Gly Glu 1 5 10 15 Ser Ala Ser
Ile Ser Cys Lys Ala Ser Gln Ser Leu Val Arg Ser Asp 20 25 30 Gly
Lys Thr Tyr Leu Tyr Trp Leu Leu Gln Lys Pro Gly Gln Ser Pro 35 40
45 Gln Arg Leu Ile Tyr Gln Val Ser Asn Arg Gly Ser Gly Val Pro Arg
50 55 60 Phe Thr Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Lys Ile
Ser Gly 65 70 75 80 Val Lys Ala Glu Asp Ala Gly Val Tyr Tyr Cys Ala
Gln Ala Thr Tyr 85 90 95 Tyr Val Thr Phe Gly Gln Gly Thr Lys Val
Glu Leu Lys 100 105 34723DNAArtificial SequenceDescription of
Artificial Sequence Synthetic primer 347caggtkcagc tggtgcagtc tgg
2334823DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 348gargtgcagc tggtgcagtc tgg 2334923DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
349cagstgcagc tgcaggagtc tgg 2335023DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
350caggtgcagc tacagcagtc tgg 2335123DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
351caggtcacct tgarggagtc tgg 2335253DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
352ctcgcaactg cggcccagcc ggccatggcc caggtkcagc tggtgcagtc tgg
5335353DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 353ctcgcaactg cggcccagcc ggccatggcc gargtgcagc
tggtgcagtc tgg 5335453DNAArtificial SequenceDescription of
Artificial Sequence Synthetic primer 354ctcgcaactg cggcccagcc
ggccatggcc cagstgcagc tgcaggagtc tgg 5335553DNAArtificial
SequenceDescription of Artificial Sequence Synthetic primer
355ctcgcaactg cggcccagcc ggccatggcc caggtgcagc tacagcagtc tgg
5335653DNAArtificial SequenceDescription of Artificial Sequence
Synthetic primer 356ctcgcaactg cggcccagcc ggccatggcc caggtcacct
tgarggagtc tgg 533576PRTArtificial SequenceDescription of
Artificial Sequence Synthetic 6xHis tag 357His His His His His His
1 5 35898PRTHomo sapiens 358Glu Val Gln Leu Val Glu Ser Gly Gly Gly
Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala
Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Trp Met His Trp Val Arg
Gln Ala Pro Gly Lys Gly Leu Val Trp Val 35 40 45 Ser Arg Ile Asn
Ser Asp Gly Ser Ser Thr Ser Tyr Ala Asp Ser Val 50 55 60 Lys Gly
Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65 70 75 80
Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85
90 95 Ala Arg 359120PRTLama glama 359Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Gly Arg Tyr 20 25 30 Ala Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35 40 45 Ser
Ala Ile Ser Trp Asn Ser Gly Arg Ile Tyr Asp Ala Glu Ser Met 50 55
60 Lys Gly Arg Phe Thr Val Ser Arg Asp Asn Thr Lys Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Asn Ala Leu Lys Thr Asp Asp Thr Ala Val Tyr
Tyr Cys 85 90 95 Ala Arg Ser Thr Ala Glu Ser Asn Trp Ile Pro Leu
Asp Trp Gly Gln 100 105 110 Gly Thr Gln Val Thr Val Ser Ser 115 120
360115PRTLama glama 360Glu Val Gln Leu Val Gln Ser Gly Gly Gly Leu
Val Gln His Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala Ser
Gly Phe Ala Phe Ser Ser Ala 20 25 30 Gly Met Ser Trp Val Arg Gln
Ala Pro Gly Lys Gly Leu Glu Gly Val 35 40 45 Ser Ala Ile Asn Thr
Arg Ser Gly Thr Thr Tyr Tyr Ala Asp Phe Thr 50 55 60 Lys Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Val Tyr 65 70 75 80 Leu
Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys 85 90
95 Asn Ala Gly Phe Pro Ser Arg Tyr Trp Gly Gln Gly Thr Gln Val Thr
100 105 110 Val Ser Ser 115 361120PRTLama glama 361Glu Glu Gln Leu
Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu
Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Gly Ser Tyr 20 25 30
Asp Met Tyr Trp Val Arg Gln Ala Pro Gly Lys Gly Pro Glu Trp Val 35
40 45 Ser Ala Ile Arg Ser Gly Gly Gly Ser Thr Tyr Tyr Ala Asp Ser
Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr
Ala Val Tyr Tyr Cys 85 90 95 Ala Lys Pro Ser Thr Ile Ala Thr Ile
Leu Phe Thr Ser Trp Gly Gln 100 105 110 Gly Thr Gln Val Thr Val Ser
Ser 115 120 362124PRTLama glama 362Glu Val Gln Leu Val Glu Ser Gly
Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys
Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr 20 25 30 Tyr Met Ser Trp
Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ser
Ile Tyr Ser Asp Gly Ser Tyr Thr Tyr Tyr Ala Asp Ser Val 50 55 60
Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu Tyr 65
70 75 80 Leu Gln Met Asn Ser Leu Lys Ser Glu Asp Thr Ala Val Tyr
Tyr Cys 85 90 95 Ala Asn Trp Asp Tyr Ser Gly Ser Tyr Tyr Ala Pro
Ala Thr Phe Gly 100 105 110 Ser Trp Gly Gln Gly Thr Arg Val Thr Val
Ser Ser 115 120 363114PRTLama glama 363Glu Val Gln Leu Val Glu Ser
Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser
Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ala 20 25 30 Val Met Ser
Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser
Gly Ile Gly Ser Gly Gly Ser Thr Thr Ser Tyr Ala Asp Ser Val 50
55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Thr Leu
Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val
Tyr Tyr Cys 85 90 95 Thr Gly Arg Gly Phe Ser Ser Trp Gly Gln Gly
Thr Gln Val Thr Val 100 105 110 Ser Ser 364114PRTLama glama 364Glu
Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly 1 5 10
15 Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Ala
20 25 30 Val Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu
Trp Val 35 40 45 Ser Thr Ile Gly Ala Ala Gly Ser Thr Thr Ser Tyr
Ala Asp Ser Val 50 55 60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn
Ala Lys Asn Thr Leu Tyr 65 70 75 80 Leu Gln Met Asn Ser Leu Lys Pro
Glu Asp Thr Ala Val Tyr Tyr Cys 85 90 95 Thr Gly Arg Gly Phe Ser
Ser Trp Gly Gln Gly Thr Gln Val Thr Val 100 105 110 Ser Ser
36510PRTCamelus dromedariusMOD_RES(8)..(8)Tyr, Asp, Trp or Ala
365Gly Phe Thr Phe Ser Ser Tyr Xaa Met Xaa 1 5 10 36610PRTHomo
sapiensMOD_RES(4)..(4)Val or Phe 366Gly Phe Thr Xaa Ser Ser Xaa Xaa
Met Xaa 1 5 10 36710PRTCamelus dromedariusMOD_RES(8)..(8)Trp or Tyr
367Gly Phe Thr Phe Ser Ser Tyr Xaa Met Xaa 1 5 10 36810PRTHomo
sapiensMOD_RES(5)..(5)Ser or Asp 368Gly Phe Thr Phe Xaa Xaa Xaa Xaa
Xaa Xaa 1 5 10 36910PRTCamelus dromedariusMOD_RES(1)..(1)Gly or Ala
369Xaa Phe Thr Xaa Ser Ser Xaa Xaa Xaa Xaa 1 5 10 37010PRTHomo
sapiensMOD_RES(2)..(2)Tyr or Gly 370Gly Xaa Thr Phe Xaa Xaa Tyr Xaa
Xaa Xaa 1 5 10 37110PRTLama glama 371Gly Phe Thr Phe Ser Ser Ser
Ala Met Ser 1 5 10 37210PRTHomo sapiensMOD_RES(2)..(2)Tyr or Gly
372Gly Xaa Thr Phe Xaa Xaa Tyr Xaa Xaa Xaa 1 5 10 3739PRTHomo
sapiensMOD_RES(1)..(1)Val or Ala 373Xaa Ile Xaa Xaa Xaa Gly Xaa Thr
Tyr 1 5 37410PRTCamelus dromedariusMOD_RES(1)..(1)Thr or Gly 374Xaa
Ile Asn Ser Xaa Gly Xaa Xaa Thr Tyr 1 5 10 37510PRTCamelus
dromedariusMOD_RES(1)..(1)Ala, Ser, Thr or Gly 375Xaa Ile Xaa Xaa
Xaa Gly Gly Ser Thr Tyr 1 5 10 37610PRTLama glama 376Ser Ile Tyr
Ser Tyr Ser Ser Asn Thr Tyr 1 5 10 3778PRTCamelus
dromedariusMOD_RES(6)..(6)Tyr or Cys 377Ser Leu Arg Asn Tyr Xaa Ala
Ala 1 5 37811PRTCamelus dromedarius 378Ser Ser Ser Asn Ile Gly Gly
Gly Ser Gly Val 1 5 10 37911PRTHomo sapiensMOD_RES(10)..(10)Asp or
Val 379Ser Ser Ser Asn Ile Gly Ala Gly Tyr Xaa Val 1 5 10
38011PRTCamelus dromedariusMOD_RES(2)..(2)Ser or Arg 380Thr Xaa Xaa
Xaa Val Gly Xaa Tyr Xaa Tyr Val 1 5 10 38111PRTHomo
sapiensMOD_RES(7)..(7)Gly, Ser or Asp 381Thr Ser Ser Asp Val Gly
Xaa Tyr Xaa Xaa Val 1 5 10 3826PRTCamelus dromedarius 382Ile Tyr
Asn Asp Asn Asn 1 5 3836PRTCamelus dromedarius 383Ile Tyr Gly Asn
Ser Asn 1 5 3846PRTHomo sapiens 384Ile Tyr Gly Asn Ser Asn 1 5
38515PRTCamelus dromedariusMOD_RES(4)..(4)Ser, Asn or His 385Ser
Ser Gln Xaa Xaa Xaa Xaa Xaa Ser Xaa Gln Xaa Ser Xaa Leu 1 5 10 15
38615PRTHomo sapiens 386Ser Ser Gln Ser Leu Leu Asp Ser Asp Asp Gly
Asn Thr Tyr Leu 1 5 10 15 3875PRTCamelus dromedarius 387Ile Tyr Tyr
Ala Ser 1 5 3885PRTHomo sapiens 388Ile Tyr Thr Leu Ser 1 5
389109PRTHomo sapiens 389Glu Val Gln Leu Leu Glu Ser Gly Gly Gly
Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala
Ser Gly Phe Thr Phe Ser Thr Tyr 20 25 30 Ala Met Ser Trp Val Arg
Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Gly Ile Asn
Thr Gly Gly Gly Ser Thr Gly Tyr Ala Asp Ser Val 50 55 60 Lys Gly
Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr 65 70 75 80
Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys 85
90 95 Ala Lys Trp Gly Gln Gly Thr Leu Val Thr Val Ser Ser 100 105
390108PRTHomo sapiens 390Glu Val Gln Leu Val Glu Ser Gly Gly Gly
Leu Val Gln Pro Gly Gly 1 5 10 15 Ser Leu Arg Leu Ser Cys Ala Ala
Ser Gly Phe Thr Phe Ser Asn Tyr 20 25 30 Trp Met Tyr Trp Val Arg
Gln Ala Pro Gly Lys Gly Leu Glu Trp Val 35 40 45 Ser Ala Ile Asn
Ala Ala Gly Ser Thr Tyr Tyr Ala Asp Ser Val Lys 50 55 60 Gly Arg
Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr Leu 65 70 75 80
Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Val Tyr Tyr Cys Ala 85
90 95 Asn Trp Gly Gln Gly Thr Leu Val Thr Val Ser Ser 100 105
391101PRTHomo sapiens 391Gln Thr Val Val Thr Gln Glu Pro Ser Phe
Ser Val Ser Pro Gly Gly 1 5 10 15 Thr Val Thr Leu Thr Cys Gly Leu
Ser Ser Gly Ser Val Thr Thr Asn 20 25 30 Asn Tyr Pro Gly Trp Tyr
Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr 35 40 45 Leu Ile Tyr Asn
Thr Asn Asn Arg Ser Ser Gly Val Pro Asp Arg Phe 50 55 60 Ser Gly
Ser Ile Leu Gly Asn Lys Ala Ala Leu Thr Ile Thr Gly Ala 65 70 75 80
Gln Ala Asp Asp Glu Ser Asp Tyr Tyr Cys Phe Gly Gly Gly Thr Lys 85
90 95 Leu Thr Val Leu Gly 100 392101PRTHomo sapiens 392Gln Thr Val
Val Thr Gln Glu Pro Ser Phe Ser Val Ser Pro Gly Gly 1 5 10 15 Thr
Val Thr Leu Thr Cys Gly Leu Ser Ser Gly Ser Val Thr Ser Gly 20 25
30 Asn Tyr Pro Gly Trp Tyr Gln Gln Thr Pro Gly Gln Ala Pro Arg Thr
35 40 45 Leu Ile Tyr Asn Thr Asn Ser Arg Ser Ser Gly Val Pro Asp
Arg Phe 50 55 60 Ser Gly Ser Ile Leu Gly Asn Lys Ala Ala Leu Thr
Ile Thr Gly Ala 65 70 75 80 Gln Ala Asp Asp Glu Ser Asp Tyr Tyr Cys
Phe Gly Gly Gly Thr Lys 85 90 95 Leu Thr Val Leu Gly 100
* * * * *
References