U.S. patent application number 14/624775 was filed with the patent office on 2015-09-10 for methods and compositions for detecting botulinum neurotoxin.
The applicant listed for this patent is Wisconsin Alumni Research Foundation. Invention is credited to Edwin R. Chapman, Min Dong.
Application Number | 20150253326 14/624775 |
Document ID | / |
Family ID | 34864464 |
Filed Date | 2015-09-10 |
United States Patent
Application |
20150253326 |
Kind Code |
A1 |
Chapman; Edwin R. ; et
al. |
September 10, 2015 |
Methods and Compositions for Detecting Botulinum Neurotoxin
Abstract
The present invention provides a molecular construct capable of
fluorescent resonance energy transfer (FRET), comprising a linker
peptide, and donor and acceptor fluorophore moieties, where the
linker peptide is a substrate of a botulinum neurotoxin selected
from the group consisting of synaptobrevin, syntaxin and SNAP-25,
or a fragment thereof capable being cleaved by the botulinum
neurotoxin, and separates the donor and acceptor fluorophores by a
distance of not more than 10 nm, and where emission spectrum of the
donor fluorophore moiety overlaps with the excitation spectrum of
the acceptor fluorophore moiety; or where the emission spectra of
the fluorophores are detectably different. Also provided are
isolated nucleic acid expressing the construct, kits comprising
said construct and cell lines comprising said nucleic acid. Further
provided are methods of detecting a BoNT using the above described
construct via FRET, and methods for detecting a BoNT using surface
plasmon resonance imaging.
Inventors: |
Chapman; Edwin R.; (Madison,
WI) ; Dong; Min; (Weatogue, CT) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Wisconsin Alumni Research Foundation |
Madison |
WI |
US |
|
|
Family ID: |
34864464 |
Appl. No.: |
14/624775 |
Filed: |
February 18, 2015 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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13403603 |
Feb 23, 2012 |
8999649 |
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14624775 |
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11014845 |
Dec 20, 2004 |
8137924 |
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13403603 |
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60530645 |
Dec 19, 2003 |
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60579254 |
Jun 15, 2004 |
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Current U.S.
Class: |
506/10 ; 435/7.4;
530/350 |
Current CPC
Class: |
G01N 33/542 20130101;
C07K 2319/50 20130101; C07K 14/705 20130101; C07K 2319/60 20130101;
G01N 33/573 20130101; C07K 14/43595 20130101; A61P 39/02 20180101;
G01N 2333/33 20130101; A61P 25/00 20180101; A61P 43/00 20180101;
C12Y 304/24069 20130101; G01N 33/56911 20130101; G01N 2333/952
20130101; C07K 14/435 20130101; A61P 31/04 20180101 |
International
Class: |
G01N 33/569 20060101
G01N033/569; C07K 14/435 20060101 C07K014/435; C07K 14/705 20060101
C07K014/705; G01N 33/542 20060101 G01N033/542 |
Goverment Interests
STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH
[0002] This invention was made with government support under
GM056827 and MH061876 awarded by the National Institutes of Health.
The government has certain rights in the invention.
Claims
1. A molecular construct capable of fluorescent resonance energy
transfer (FRET), comprising a linker peptide, a donor fluorophore
moiety and an acceptor fluorophore moiety, wherein the linker
peptide is a substrate of a botulinum neurotoxin selected from the
group consisting of synaptobrevin, syntaxin and SNAP-25, or a
fragment thereof that is able to be cleaved by the botulinum
neurotoxin, and separates the donor and acceptor fluorophores by a
distance of not more than 10 nm, and wherein emission spectrum of
the donor fluorophore moiety overlaps with the excitation spectrum
of the acceptor fluorophore moiety.
2. The construct of claim 1, wherein the donor fluorophore moiety
is a green fluorescent protein or a variant thereof, and the
acceptor fluorophore moiety is a corresponding variant of the green
fluorescent protein.
3. The construct of claim 1, wherein the linker peptide comprises
at least about 14 amino acid residues and an amino acid sequence
selected from the group consisting of SEQ ID NOs: 1-6.
4. The construct of claim 3, wherein the linker peptide comprises
at least about 15, 16, 17, 18, 19, 20, 21, 22, 23, or 25 amino acid
residues.
5. The construct of claim 3, wherein the linker peptide comprises
at least about 30 amino acid residues.
6. The construct of claim 3, wherein the linker peptide comprises
at least about 35, 40, 45, 50, 55, 60, 65, or 70 amino acid
residues.
7. A kit comprising the construct of claim 1, and a suitable
container.
8. A method for detecting a botulinum neurotoxin, the method
comprising, a) providing the construct of claim 1, wherein the
linker is a substrate protein or a cleavable fragment thereof
corresponding to the botulinum neurotoxin to be detected; b)
exposing the construct to a sample suspected of containing a
botulinum neurotoxin under a condition under which the botulinum
neurotoxin cleaves the protein substrate or a fragment thereof; and
c) detecting and comparing the FRET signal before and after the
construct is exposed to the sample, wherein a decrease in FRET
indicates the presence of botulinum neurotoxin in the sample.
9. The method of claim 8, further comprising providing Zn.sup.2+ to
the sample to be detected.
10. The method of claim 8, wherein the botulinum neurotoxin is
BoNT/A, E, or C, and the corresponding substrate protein is SNAP-25
or a cleavable fragment thereof.
11. The method of claim 8, wherein the botulinum neurotoxin is
BoNT/B, D, F, or G, and the corresponding substrate protein is
synaptobrevin (Syb) or a cleavable fragment thereof.
12. The method of claim 8, wherein the botulinum neurotoxin is
BoNT/C, and the corresponding substrate protein is SNAP-25 or a
cleavable fragment thereof.
13. The method of claim 8, wherein the FRET is detected by a method
selected from the group consisting of (a) measuring fluorescence
emitted at the acceptor (A) emission wavelength and donor (D)
emission wavelength and determining energy transfer by the ratio of
the respective emission amplitudes; (b) measuring fluorescence
lifetime of D; (c) measuring photobleaching rate of D; (d)
measuring anisotropy of D or A; and (e) measuring the Stokes shift
monomer/excimer fluorescence.
14. The method of claim 8, wherein the fluorophore pair is
CFP-YFP.
15. The method of claim 8, wherein the construct is a recombinant
protein expressed in a cell.
16. A method for screening for an inhibitor of a botulinum
neurotoxin, comprising a) providing a cell genetically engineered
to express the construct of claim 2, wherein the linker in the
construct is a substrate peptide corresponding to the botulinum
toxin; b) exposing said cell to the botulinum neurotoxin in the
presence of a candidate inhibitor compound; and c) detecting FRET
signals of the cell before and after said exposing to the botulinum
toxin, wherein an observation of substantially no decrease in FRET,
as compared to a cell exposed to the botulinum neurotoxin in the
absence of the candidate inhibitor, indicates that the candidate
inhibitor is capable of inhibiting the botulinum neurotoxin.
17. The method of claim 16, wherein the candidate compound is among
a library of compounds and the method is a high throughput
method.
18. A method for detecting a botulinum neurotoxin, the method
comprising the steps of: a) depositing a layer of a BoNT target
peptide onto a metal surface; b) exposing said metal surface having
BoNT target peptide on its surface to a sample suspected of
containing a corresponding BoNT, under conditions to allow the BoNT
to cleave the target peptide on the metal surface; and c) measuring
any decrease in the molecular weight of the target peptide bound to
the metal surface as a result of BoNT cleavage via surface Plasmon
resonant imaging.
19. The construct of claim 1, wherein the linker peptide comprises
at least 71 amino acid residues and a sequence selected from the
group consisting of SEQ ID NOs: 1-6, and wherein the linker peptide
adopts a conformation with which FRET occurs between the donor and
acceptor fluorophores.
20. The construct of claim 19, wherein the linker peptide is a
full-length molecule of synaptobrevin, syntaxin or SNAP-25.
21. A method for detecting a botulinum neurotoxin, the method
comprising, a) providing the construct of claim 19, b) exposing the
construct to a sample suspected of containing a botulinum
neurotoxin under a condition under which the botulinum neurotoxin
cleaves the protein substrate or a fragment thereof, and c)
detecting and comparing the FRET signal before and after the
construct is exposed to the sample, wherein a decrease in FRET
indicates the presence of botulinum neurotoxin in the sample.
22. A molecular construct comprising a linker peptide, a first
fluorophore moiety, and a second fluorophore moiety, wherein the
linker peptide is a substrate of a botulinum neurotoxin selected
from the group consisting of synaptobrevin, syntaxin and SNAP-25,
or a fragment thereof that is able to be cleaved by the botulinum
neurotoxin, and wherein emission spectrum of the first fluorophore
moiety is detectably different from the excitation spectrum of the
second fluorophore moiety.
23. The construct of claim 22, wherein the linker peptide is a
full-length molecule of synaptobrevin, syntaxin or SNAP-25.
24. The construct of claim 22, which is anchored to a vesicle.
25. A method for detecting a botulinum neurotoxin, the method
comprising, a) providing the construct of claim 22; b) exposing the
construct to a sample suspected of containing a botulinum
neurotoxin under a condition under which the botulinum neurotoxin
cleaves the protein substrate or a fragment thereof; and c)
detecting spatial separation of the fluorescence signals of the
first and second fluorophores, wherein occurrence of spatial
separation indicates the presence of botulinum neurotoxin in the
sample.
26. The method of claim 25, wherein the vesicle is inside a live
cell, wherein the linker peptide is CFP-SNAP-25 (1-197) linked to
SNAP-25 (198-206)YFP, and wherein detection of CFP fluorescence but
not YFP fluorescence indicates the existence of presence of
botulinum neurotoxin in the sample.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application is a continuation of U.S. patent
application Ser. No. 13/403,603, now allowed, which is a divisional
application of U.S. patent application Ser. No. 11/014,845, issued
as U.S. Pat. No. 8,137,924 on Mar. 20, 2012, which claims the
benefit of U.S. Provisional Application Ser. No. 60/530,645, filed
Dec. 19, 2003, and U.S. Provisional Application Ser. No.
60/579,254, filed Jun. 15, 2004, the contents of which are
incorporated herein by reference in their entirety.
BACKGROUND OF THE INVENTION
[0003] Botulinum neurotoxins (BoNTs) are produced by Clostridium
botulinum and are the most potent toxins known. These toxins are a
well-recognized source of food poisoning, often resulting in
serious harm or even death of the victims. There are seven
structurally related botulinum neurotoxins or serotypes (BoNT/A-G),
each of which is composed of a heavy chain (-100 KD) and a light
chain (-50 KD). The heavy chain mediates toxin entry into a target
cell through receptor-mediated endocytosis. Once internalized, the
light chain is translocated from endosomal vesicle lumen into
cytosol, and acts as a zinc-dependent protease to cleave proteins
that mediate vesicle-target membrane fusion ("substrate proteins").
Cleavage of SNARE proteins blocks vesicle fusion with plasma
membrane and abolishes neurotransmitter release at neuromuscular
junction.
[0004] These BoNT substrate proteins include plasma membrane
protein syntaxin, peripheral membrane protein SNAP-25, and a
vesicle membrane protein synaptobrevin (Syb). These proteins are
collectively referred to as the SNARE (soluble
N-ethylmaleimide-sensitive factor attachment protein receptor)
proteins. Among the SNARE proteins, syntaxin and SNAP-25 usually
reside on the target membrane and are thus referred to as t-SNAREs,
while synaptobrevin is found exclusively with synaptic vesicles
within the synapse and is called v-SNARE. Together, these three
proteins form a complex that are thought to be the minimal
machinery to mediate the fusion between vesicle membrane and plasma
membrane. BoNT/A, E, and C1 cleave SNAP-25, BoNT/B, D, F, G cleave
synaptobrevin (Syb), at single but different sites. BoNT/C also
cleaves syntaxin in addition to SNAP-25.
[0005] Botulinum neurotoxins are listed as a bioterror threat due
to their extreme potency and the lack of immunity in the
population. Because of their paralytic effect, low dose of
botulinum neurotoxin has also been used effectively to treat
certain muscle dysfunctions and other related diseases in recent
years.
[0006] Due to their threat as a source of food poisoning, and as
bioterrorism weapons, there is a need to sensitively and speedily
detect BoNTs. Currently, the most sensitive method to detect toxins
is to perform toxicity assay in mice. This method requires large
numbers of mice, is time-consuming and cannot be used to study
toxin catalytic kinetics. A number of amplified immunoassay systems
based on using antibodies against toxins have also been developed,
but most of these systems require complicated and expensive
amplification process, and cannot be used to study toxin catalytic
activity either. Although HPLC and immunoassay can be used to
detect cleaved substrate molecules and measure enzymatic activities
of these toxins, these methods are generally time-consuming and
complicated, some of them require specialized antibodies, making
them inapplicable for large scale screening. Therefore, there is a
need for new and improved methods and compositions for detecting
BoNTs.
[0007] There is also a need for improved technique for screening
for inhibitors of BoNTs. These inhibitors can be used as antidotes
to the toxins for both preventive and treatment purposes.
[0008] Recently, a new approach based on intramolecular quenching
of fluorigenic amino acid derivatives has been explored. In
principle, two amino acid derivatives are used to replace two
native amino acids in a very short synthetic peptide (20-35 amino
acids) that containing toxin cleavage sites. The fluorescence
signal of one amino acid derivative is quenched by another amino
acid derivative when they are close to each other in the peptide.
Cleavage of the peptide separates two amino acid derivatives and an
increase in fluorescence signal can be detected (Schmidt J,
Stafford R, Applied and Environmental microbiology, 69:297, 2003).
This method has been successfully used to characterize a BoNT/B
inhibitor. However, it requires synthesis of peptides with modified
amino acid derivatives and is not suitable for use in living
cells.
SUMMARY OF THE INVENTION
[0009] In one embodiment, the present invention provides a
molecular construct capable of fluorescent resonance energy
transfer (FRET), comprising a linker peptide, a donor fluorophore
moiety and an acceptor fluorophore moiety, wherein the linker
peptide is a substrate of a botulinum neurotoxin selected from the
group consisting of synaptobrevin, syntaxin and SNAP-25, or a
fragment thereof that can be recognized and cleaved by the
botulinum neurotoxin ("cleavable fragment"), and separates the
donor and acceptor fluorophores by a distance of not more than 10
nm, and wherein emission spectrum of the donor fluorophore moiety
overlaps with the excitation spectrum of the acceptor fluorophore
moiety.
[0010] Preferably, the donor fluorophore moiety is a green
fluorescent protein or a variant thereof, and the acceptor
fluorophore moiety is a corresponding variant of the green
fluorescent protein.
[0011] In one embodiment, the linker peptide comprises at least
about 14 amino acid residues and an amino acid sequence selected
from the group consisting of SEQ ID NOs: 1-6. In a preferred
embodiment, the linker peptide comprises at least about 15, or at
least about 16, or at least about 17, or at least about 18, or at
least about 19, or at least about 20, or at least about 21, or at
least about 22, or at least about 23, or at least about 24, or at
least about 25, or at least about 26, or at least about 27, or at
least about 28, or at least about 29 amino acid residues, and a
sequence selected from the group consisting of SEQ ID NOs:1-6.
[0012] In a preferred embodiment, the linker peptide comprises at
least about 30 amino acid residues and an amino acid sequence
selected from the group consisting of SEQ ID NOs:1-6. More
preferably, the linker peptide comprises at least about 35 amino
acid residues, or at least about 40 amino acid residues, or at
least about 45 amino acid residues, or at least about 50 amino acid
residues. In a particularly preferred embodiment, a construct of
the present invention comprises a linker peptide that comprises at
least about 55 amino acid residues, or at least about 65 amino acid
residues.
[0013] The present invention further provides an isolated
polynucleotide molecule encoding a construct described above. The
construct is preferably an expression vector comprising the
polynucleotide molecule operably linked to a promoter. A preferable
promoter for the invention is an inducible promoter.
[0014] The present invention also provides a cell comprises an
isolated polynucleotide molecule described above. In one
embodiment, the cell is selected from the group consisting of a
primary cultured neuron cell, PC12 cell or a derivative thereof, a
primary cultured chromaphin cell, a neuroblastoma cell, a human
adrenergic SK-N-SH cell, and a NS-26 cell line. Preferably, the
cell is a cortical neuron cell, a hippocampal neuron cell, a spinal
cord motor neuron cell, or a murine cholinergic Neuro 2a cell.
[0015] In a further embodiment, the present invention provides a
kit which comprises a construct of the present invention in a
suitable container.
[0016] Also disclosed herein is a method for detecting a botulinum
neurotoxin, the method comprising providing a construct described
hereinabove, wherein the linker is substrate protein or a fragment
thereof corresponding to the botulinum neurotoxin to be detected,
exposing the construct to a sample suspected of containing a
botulinum neurotoxin under a condition under which the botulinum
neurotoxin cleaves the protein substrate or a fragment thereof, and
detecting and comparing the FRET signal before and after the
construct is exposed to the sample, wherein a decrease in FRET
indicates the presence of botulinum neurotoxin in the sample. In a
preferred embodiment, additional Zn.sup.2+ is added to the sample
to be detected. The method of the invention is suitable for the
detection of a botulinum neurotoxin selected from the group
consisting of BoNT/A, E, and C, and the corresponding substrate
protein is SNAP-25 or a cleavable fragment thereof. The method of
the present invention is also suitable for the detection of BoNT/B,
D, F or G, using synaptobrevin (Syb) or a cleavable fragment
thereof as a corresponding substrate protein. Similarly, the method
of the present invention is suitable for detecting BoNT/C, with
SNAP-25 or a cleavable fragment thereof as a corresponding
substrate protein.
[0017] In a preferred embodiment, for the method of the present
invention, FRET is detected by a method selected from the group
consisting 1) measuring fluorescence emitted at the acceptor (A)
emission wavelength and donor (D) emission wavelength, and
determining energy transfer by the ratio of the respective emission
amplitudes; 2) measuring fluorescence lifetime of D; 3) measuring
photobleaching rate of D; 4) measuring anisotropy of D or A; and 5)
measuring the Stokes shift monomer/excimer fluorescence.
[0018] A particularly preferred fluorophore pair for the present
invention is CFP-YFP.
[0019] The present invention also provides a method for screening
for an inhibitor of a botulinum neurotoxin, comprising providing a
cell genetically engineered to express a construct as described
above, wherein the linker in the construct is a substrate peptide
corresponding to the botulinum toxin; exposing said cell to the
botulinum neurotoxin in the presence of a candidate inhibitor
compound; and detecting FRET signals of the cell before and after
said exposing to the botulinum toxin, wherein an observation of
substantially no decrease in FRET, compared to a cell exposed to
the botulinum neurotoxin in the absence of the candidate inhibitor,
indicates that the candidate inhibitor is capable of inhibiting the
botulinum neurotoxin. Preferably, the candidate compound is among a
library of compounds and the method is a high throughput
method.
[0020] In a further embodiment, the present invention provides a
method for detecting a botulinum neurotoxin, the method comprising
depositing a layer of a BoNT target peptide onto a metal surface,
exposing said metal surface having BoNT target peptide on its
surface to a sample suspected of containing a corresponding BoNT,
under conditions to allow the BoNT to cleave the target peptide on
the metal surface, and measuring any decrease in the molecular
weight of the target peptide bound to the metal surface as a result
of BoNT cleavage via surface Plasmon resonant imaging.
[0021] Another embodiment of the present inventions is a method for
detecting a botulinum neurotoxin, the method comprising, a)
providing a construct described hereinabove, wherein the linker is
a substrate protein or a cleavable fragment thereof corresponding
to the botulinum neurotoxin to be detected, and wherein the
construct is anchored to a plasma membrane of cell, such that the
linker protein adopts a conformation with which FRET occurs between
the donor and acceptor fluorophore, b) exposing the construct to a
sample suspected of containing a botulinum neurotoxin under a
condition under which the botulinum neurotoxin cleaves the protein
substrate or a fragment thereof, and c) detecting and comparing the
FRET signal before and after the construct is exposed to the
sample, wherein a decrease in FRET indicates the presence of
botulinum neurotoxin in the sample.
[0022] The present invention further provides a molecular construct
comprising a linker peptide, a first fluorophore moiety and a
second fluorophore moiety, wherein the linker peptide is a
substrate of a botulinum neurotoxin selected from the group
consisting of synaptobrevin, syntaxin and SNAP-25, or a fragment
thereof that is able to be cleaved by the botulinum neurotoxin, and
wherein emission spectrum of the first fluorophore moiety is
detectably different from the excitation spectrum of the second
fluorophore moiety. Preferably, the linker is a full-length protein
of the substrate synaptobrevin, syntaxin, or SNAP-25. Preferably,
the construct is anchored to a vesicle, which may or may not be
inside a cell. The present further provides a polynucleotide
construct encoding the above polypeptide construct.
[0023] The present invention further provides a method for
detecting a botulinum neurotoxin, the method comprising a)
providing a peptide construct as described above, b) exposing the
construct to a sample suspected of containing a botulinum
neurotoxin under a condition under which the botulinum neurotoxin
cleaves the protein substrate or a fragment thereof, and c)
detecting spatial separation of the fluorescence signals of the
first and second fluorophores, wherein occurrence of spatial
separation indicates the presence of botulinum neurotoxin in the
sample. Preferably, the vesicle is inside a live cell, the linker
peptide is CFP SNAP-25 (1-197) linked to SNAP-25 (198-206)-YFP,
wherein detection of CFP fluorescence but not YFP fluorescence
indicates the existence of presence of botulinum neurotoxin in the
sample.
[0024] The invention is described in more details below with the
help of the drawings and examples, which are not to be construed to
be limiting the scope of the present invention.
DESCRIPTION OF THE DRAWINGS
[0025] FIGS. 1A-B are schematic depictions of the CFP-YFP based
bio-sensors for monitoring botulinum neurotoxin protease activity.
FIG. 1A is a design of the biosensor constructs. CFP and YFP are
connected via a fragment of synaptobrevin (amino acid 33-94, upper
panel), or SNAP-25 (amino acid 141-206, lower panel), respectively.
The cleavage sites for each botulinum neurotoxin on these fragments
are labeled. FIG. 1B shows that CFP and YFP function as a
donor-acceptor pair for FRET, in which the excitation of CFP
results in YFP fluorescence emission (upper panel). Energy transfer
between linked CFP and YFP is abolished after cleavage of the
synaptobrevin or SNAP-25 fragment with botulinum neurotoxins (lower
panel). The optimal excitation wavelength for CFP is 434 nM, and
the emission peak is 470 nM for CFP, and 527 nM for YFP.
[0026] FIGS. 2A-C show the fluorescence emission spectra of the
recombinant biosensor proteins. FIG. 2A shows the emission spectra
of the recombinant his5-tagged CFP and YFP alone (300 nM), as well
as the mixture of these two proteins (1:1). The fluorescence
signals were collected from 450 to 550 nM using a PTIQM-1
fluorometer in Hepes buffer (50 mM Hepes, 2 mM DTT, and 10 .mu.M
ZnCl.sub.2, pH 7.1). The excitation wavelength is 434 nM, the
optimal for CFP. The YFP protein only elicits a small fluorescence
emission signal by direct excitation at 434 nM. FIG. 2B shows the
emission spectra of recombinant his5-tagged CFP-Sybll-YFP,
collected as described in panel FIG. 2A. The arrow indicates the
YFP emission peak resulted from FRET.
[0027] FIG. 3 depicts that the cleavage of bio-sensor proteins by
botulinum neurotoxin can be monitored by emission spectra scan in
real time in vitro. A): BoNT/B were pre-reduced with 2 mM DTT, 10
.mu.M ZnCl.sub.2 for 30 minutes at 37.degree. C. 50 nM toxin were
added into a cuvette that contained 300 nM CFP-Sybll-YFP protein in
the Hepes buffer (50 mM Hepes, 2 mM DTT, 10 .mu.M ZnCl.sub.2). The
emission spectra was recorded as described in FIG. 2A at indicated
time before and after adding toxin (upper panel). 30 .mu.l samples
were taken from the cuvette after each emission scan, and mixed
with SDS-loading buffer. These samples were subject to SDS-PAGE and
enhanced chemilluminescence (ECL). The cleavage of CFP-Sybll-YFP
fusion protein was detected using an anti-his6 antibody that
recognizes the his5 tag at the fusion protein N-terminus (lower
panel). The cleavage of CFP-Sybll-YFP fusion protein resulted in
decreased YFP fluorescence and increased CFP fluorescence. This
change was recorded in real-time by emission spectra scan. B):
CFP-Sybll-YFP was used to test BoNT/F activity, as described in
panel A. C): CFP-SNAP-25-YFP was used to test BoNT/A activity (10
nM toxin was used), as described in panel A. D): CFP-SNAP-25-YFP
was used to test BoNT/E activity (10 nM toxin was used), as
described in panel A.
[0028] FIG. 4 shows the monitoring of botulinum neurotoxin protease
kinetics using bio-sensor proteins in a microplate
spectrofluorometer. A): Fluorescence change during the cleavage of
bio-sensor proteins by botulinum neurotoxin could be recorded in
real time using a plate-reader. 10 nM BoNT/A were mixed with 300 nM
CFP-SNAP-25-YFP, and 100 .mu.l per well sample was scanned using a
plater-reader. The excitation is 434 nm, and for each data point,
both emission value at 470 nm (CFP channel), and 527 nm (YFP or
FRET channel) were collected. The reaction was traced for one and
half hour at the interval of 30 seconds per data point. The
decrease of YFP fluorescence and the increase of CFP fluorescence
were monitored in real time. B): The rate of cleavage is dependent
on the concentration of the neurotoxin. The various concentrations
of botulinum neurotoxin A and E were tested for their ability to
cleave the same amount of bio-sensor proteins. FRET signal change
(FRET ratio) is measured by the ratio between YFP emission signal
and the CFP emission signal at the same data point. C):
CFP-SNAP-25-YFP protein alone, and the CFPIYFP protein mixture
(1:1) were scanned at the same time, as the internal control.
[0029] FIG. 5 shows the sensitivity of the bio-sensor assay using a
plate reader. A): 300 nM CFP-SNAP-25-YFP were mixed with various
concentration of BoNT/A or E in a 96-well plate, the total volume
is 100 .mu.l per well. The plate was incubated at 37.degree. C. for
4 hours and then scanned with a plate-reader (upper panel). The
FRET ratio was plotted against the log value of the toxin
concentration. The EC.sub.50 values for each curve are listed in
the table on the lower panel. Each data point represents the mean
of three independent experiments. B): 300 nM CFPSybll-YFP were
mixed with various concentration of BoNT/B or F. The data were
collected and plotted as described in panel A.
[0030] FIG. 6 depicts the monitoring of botulinum neurotoxin
activity in living cells. A): CFP-SNAP-25-YFP was expressed in wild
type PC12 cells. The entry and catalytic activity of BoNT/A (50 nM)
was monitored by recording the FRET ratio change that results from
CFP-SNAP-25-YFP cleavage inside the cells. The FRET ratio was
averaged from a total of 53 toxin treated cells and 53 control
cells. Treatment with BoNT/A for 72 hours reduced the FRET ratio of
the entire population of cells by a significant degree (P<1.4
7E-5). B): PC12 cells that express syt II were transfected with
CFP-Sybll-YFP and treated with BoNT/B (30 nM). The entry and
catalytic activity of BoNT/B were monitored by recording the FRET
ratio change as in panel (A); 73 toxin treated and 73 control cells
were analyzed. Treatment with BoNT/B for 72 hours reduced the FRET
ratio of the entire population of cells by a significant degree
(P<2E-10).
[0031] FIG. 7 shows the monitoring BoNT/A activity in living cells
using according to the present invention. (a) Measuring the FRET
signal of toxin sensors in living cells. CFP SNAP-25(141-206)-YFP
was used to transfect PC12 cells. This sensor appeared to be
soluble in cells. Three images using different filter set (CFP,
FRET and YFP) were taken for each cell sequentially, using exactly
the same settings. Images were color coded to reflect the
fluorescence intensity in arbitrary units as indicated in the
look-up table on the left. The corrected FRET value was calculated
by subtracting the cross-talk from both CFP and YFP from the
signals collected using the FRET filter set, as detailed in the
Methods. (b) PC12 cells transfected with CFP-SNAP-25(141-206)-YFP
were used to detect BoNT/A activity. Fifty nM BoNT/A holotoxin was
added to the culture medium and 80 cells were analyzed after 96
hours. The corrected FRET signal was normalized to the CFP
fluorescence signal and plotted as a histogram with the indicated
bins. Control cells were transfected with the same sensor but were
not treated with toxins, and they were analyzed in parallel.
Incubation with BoNT/A shifted the FRET ratio (corrected FRET/CFP)
among the cell population, indicating the sensor proteins were
cleaved by BoNT/A in cells. However, the shift was small,
indicating that the cleavage was not efficient in cells. (c) Left
panel: an efficient toxin sensor was built by linking CFP and YFP
through full-length SNAP-25 (amino acid 1-206), and tested for
detecting BoNT/A activity in cells. This CFP-SNAP-25(FL)-YFP fusion
protein was localized primarily to plasma membranes in cells via
palmitoylation at its four cysteines (left panel, upper frames of
the middle panel). Middle panel: PC12 cells were transfected with
the CFP-SNAP-25(FL)-YFP sensor and used to detect BoNT/A activity.
Fifty nM BoNT/A holotoxin was added to the culture medium and the
FRET signals of 200 cells were analyzed after 48 and 96 hours as
described in panel (a). Control cells were transfected with toxin
sensors but were not treated with toxins, and they were analyzed in
parallel. The images of representative cells were shown in the
middle panel. This sensor yielded significant FRET (upper
"corrected FRET` frame of the middle panel). The FRET signal was
abolished after cells were treated with BoNT/A (96 h, lower
"corrected FRET` frame of the middle panel). Note: one of the
cleavage products, the C-terminus of SNAP-25 tagged with YFP, was
degraded after toxin cleavage. Thus, the fluorescence signal of YFP
was significantly decreased in toxin-treated cells (lower "YFP"
frame). Right panel: the FRET ratios are plotted as a histogram
with indicated bins as described in panel (b). (d). PC12 cells were
transfected with CFP-SNAP-25(Cys-Ala)-YFP (full length SNAP-25 with
Cys 85,88,90,92 Ala mutations, left panel). This protein has
diffusely distributed throughout the cytosol, and lacked the strong
FRET signal observed for CFP-SNAP-25(FL)-YFP (right panel,
"corrected FRET` frame). (e). PC12 cells were transfected with
CFP-SNAP-25(FL)-YFP and CFP-SNAP-25(Cys-Ala)-YFP. Cells were then
treated with (+, intact cells) or without (-, intact cells) BoNT/A
(50 nM, 72 h), and were harvested. Half of the cell extracts from
samples that are not been exposed to BoNT/A were also incubated
with (+, in vitro) or without (-, in vitro) reduced BoNT/A in vitro
(200 nM, 30 minutes, 37.degree. C.), served as controls to show the
cleavage products (two cleavage products are indicated by arrows).
The same amount of each sample (30 .mu.g cell lysate) was loaded to
one SDS-PAGE gel and subjected to immunoblot analysis using an
anti-GFP antibody. While CFP-SNAP-25(FL)-YFP underwent significant
cleavage in intact cells, there was no detectable cleavage of
CFP-SNAP-25(Cys-Ala)-YFP in cells, indicating the membrane
anchoring is important for efficient cleavage by BoNT/A in living
cells. Note: only one cleavage product (CFP-SNAP-25(1-197)) was
detected in toxin treated cells, indicating that the other cleavage
product (SNAP-25(198-206)-YFP) was largely degraded in cells.
[0032] FIG. 8 shows that anchoring CFP-SNAP-25(141-206)-YFP sensor
to the plasma membrane created a sensor that was efficiently
cleaved by BoNT/A in cells. (a). A schematic description of the
construct built to target CFP-SNAP-25(141-206)YFP to the plasma
membrane. A fragment of SNAP-25 that contains the palmitoylation
sites (residues 83-120) was fused to the N-terminus of the
CFPSNAP-25(141-206)-YFP sensor, and this fragment targeted the
fusion protein to the plasma membrane. (b). PC12 cells were
transfected with SNAP-25(83-120)-CFPSNAP-25(141-206)-YFP. Fifty nM
BoNT/A holotoxin was added to the culture medium and the FRET
signals of 80 cells were analyzed after 96 hours as described in
FIG. 7A. Control cells, transfected with toxin sensors but not
treated with toxins, were analyzed in parallel. The images of
representative cells are shown in the left panel. This sensor
yielded significant FRET (upper "corrected FRET` frame of the left
panel). The FRET signal was reduced after cells were treated with
BoNT/A (96 h, lower "corrected FRET` frame of the left panel).
Right panel: the FRET ratios of cells are plotted as a histogram
with indicated bins as described in FIG. 7B. (c). PC12 cells were
transfected with various CFP/YFP constructs and the corresponding
FRET ratios were determined as described in FIG. 7A. Co-expression
of CFP and YFP in cells, did not result in significant FRET under
our assay conditions. CFP-SNAP-25(FL) YFP exhibited significant
levels of FRET whereas the soluble CFP-SNAP-25(Cys-Ala)-YFP did
not.
[0033] FIG. 9 shows that efficient cleavage of Syb by BoNT/B
requires the localization of Syb to vesicles. (a).
CFP-Syb(33-94)-YFP was used to transfect a PC12 cell line that
stably expresses synaptotagmin II (Dong et al. Synaptotagmins I and
II mediate entry of botulinum neurotoxin B into cells. J. Cell
Biol. 162, 1293-1303 (2003)). This sensor appears to be soluble
inside cells and generates strong FRET signals (upper panel). PC12
cells transfected with CFP-Syb(33-94)-YFP were used to detect
BoNT/B activity. Fifty nM BoNT/B holotoxin was added to the culture
medium and 80 cells were analyzed after 96 hours as described in
FIG. 7B. Control cells were transfected with the same sensor but
were not treated with toxins, and they were analyzed in parallel.
Incubation with BoNT/B shifted the FRET ratio among the cell
population, indicating the sensor proteins were cleaved by BoNT/B
in cells. However, the shift was small, indicating that the
cleavage was not efficient in cells. (b). A schematic description
of YFP-Syb(FL)-CFP sensor. Full length Syb contains 116 amino
acids, and is localized to vesicles through a single transmembrane
domain. Cleavage of Syb by BoNT/B released the cytoplasmic domain
of Syb tagged with YFP from the vesicle. (c). PC12 cells that
stably express synaptotagmin II were transfected with
YFP-Syb(FL)-CFP, and were treated with BoNT/B (50 nM, 48 h, lower
frames), or without toxin (control, upper frames). CFP and YFP
fluorescence images were collected for each cell, and
representative cells are shown. This sensor is localized to
vesicles, and was excluded from the nucleus in living cells, as
evidenced by both CFP and YFP fluorescent signals (upper frames).
BoNT/B treatment resulted in a redistribution of YFP signals, which
became soluble in the cytosol and entered the nucleus. (d). A
truncated version of Syb, residues 33-116, was used to link a CFP
and YFP. This construct contains the same cytosolic region
(residues 33-94, panel (b)) as the Syb fragments in the soluble
sensor CFP-Syb(33-96)-YFP, and it also contains the transmembrane
domain of Syb. PC12 cells that express synaptotagmin II were
transfected with CFP-Syb(33-116)YFP and CFP-Syb(33-94)-YFP. Cells
were then treated with (+, intact cells) or without (-, intact
cells) BoNT/B (50 nM, 48 h), and were harvested. Half of the cell
extracts from samples that were not exposed to BoNT/B were also
incubated with (+, in vitro) or without (-, in vitro) reduced
BoNT/B in vitro (200 nM, 30 min, 37.degree. C.). Two cleavage
products are indicated by asterisks. The same amount of each sample
(30 .mu.g cell lysate) was loaded to one SDS-PAGE gel and subjected
to immunoblot analysis using an anti-GFP antibody. While
CFP-Syb(33-116)-YFP underwent significant cleavage in intact cells,
there was no detectable cleavage of CFP-Syb(33-94)-YFP, indicating
the localization to vesicles is important for efficient cleavage by
BoNT/B in living cells.
DETAILED DESCRIPTION OF THE INVENTION
[0034] The present invention provides novel compositions and
methods based on fluorescence resonance energy transfer (FRET)
between fluorophores linked by a peptide linker which is a
substrate of a BoNT and can be cleaved by the toxin, to detect
botulinum neurotoxins and monitor their substrate cleavage
activity, preferably in real time. The method and compositions of
the present invention allow for the detection of picomolar level
BoNTs within hours, and can trace toxin enzymatic kinetics in real
time. The methods and compositions can further be used in
high-throughput assay systems for large-scale screening of toxin
inhibitors, including inhibitors of toxin cellular entry and
translocation through vesicle membrane using cultured cells. The
present invention is also suitable for monitoring botulinum
neurotoxin activity in living cells and neurons.
[0035] In another embodiment, the present invention provides a
construct and method of using the construct which comprises
full-length SNAP-25 and Syb proteins as the linkers, as fluorescent
biosensors that can detect toxin activity within living cells.
Cleavage of SNAP-25 abolished CFPNFP FRET signals and cleavage of
Syb resulted in spatial redistribution of the YFP fluorescence in
cells. The present invention provides a means to carry out cell
based screening of toxin inhibitors and for characterizing toxin
activity inside cells. The present invention also discloses that
the sub-cellular localization of SNAP-25 and Syb affects efficient
cleavage by BoNT/A and B in cells, respectively.
[0036] Fluorescent Resonance Energy Transfer (FRET) is a tool which
allows the assessment of the distance between one molecule and
another (e.g. a protein or nucleic acid) or between two positions
on the same molecule. FRET is now widely known in the art (for a
review, see Matyus, (1992) J. Photochem. Photobiol. B: Biol.,
12:323). FRET is a radiationless process in which energy is
transferred from an excited donor molecule to an acceptor molecule.
Radiationless energy transfer is the quantum-mechanical process by
which the energy of the excited state of one fluorophore is
transferred without actual photon emission to a second fluorophore.
The quantum physical principles are reviewed in Jovin and Jovin,
1989, Cell Structure and Function by Microspectrofluorometry, eds.
E. Kohen and J. G. Hirschberg, Academic Press. Briefly, a
fluorophore absorbs light energy at a characteristic wavelength.
This wavelength is also known as the excitation wavelength. The
energy absorbed by a fluorochrome is subsequently released through
various pathways, one being emission of photons to produce
fluorescence. The wavelength of light being emitted is known as the
emission wavelength and is an inherent characteristic of a
particular fluorophore. In FRET, that energy is released at the
emission wavelength of the second fluorophore. The first
fluorophore is generally termed the donor (D) and has an excited
state of higher energy than that of the second fluorophore, termed
the acceptor (A).
[0037] An essential feature of the process is that the emission
spectrum of the donor overlap with the excitation spectrum of the
acceptor, and that the donor and acceptor be sufficiently
close.
[0038] In addition, the distance between D and A must be
sufficiently small to allow the radiationless transfer of energy
between the fluorophores. Because the rate of energy transfer is
inversely proportional to the sixth power of the distance between
the donor and acceptor, the energy transfer efficiency is extremely
sensitive to distance changes. Energy transfer is said to occur
with detectable efficiency in the 1-10 nm distance range, but is
typically 4-6 nm for optimal results. The distance range over which
radiationless energy transfer is effective depends on many other
factors as well, including the fluorescence quantum efficiency of
the donor, the extinction coefficient of the acceptor, the degree
of overlap of their respective spectra, the refractive index of the
medium, and the relative orientation of the transition moments of
the two fluorophores.
[0039] The present invention provides a construct ("FRET
construct") which comprises a fluorophore FRET donor and an
acceptor linked by linker peptide ("substrate peptide") that is
cleavable by a corresponding BoNT. In the presence of a BoNT, the
linker peptide is cleaved, thereby leading to a decrease in energy
transfer and increased emission of light by the donor fluorophore.
In this way, the proteolysis activity of the toxin can be monitored
and quantitated in real-time.
[0040] As used herein with respect to donor and corresponding
acceptor fluorescent moieties, "corresponding" refers to an
acceptor fluorescent moiety having an emission spectrum that
overlaps the excitation spectrum of the donor fluorescent moiety.
The wavelength maximum of the emission spectrum of the acceptor
fluorescent moiety should be at least 100 nm greater than the
wavelength maximum of the excitation spectrum of the donor
fluorescent moiety. Accordingly, efficient non-radioactive energy
transfer can be produced.
[0041] As used herein with respect to substrate peptide and BoNT,
"corresponding" refers to a BoNT toxin that is capable of acting on
the linker peptide and cleaves at a specific cleavage site.
[0042] Fluorescent donor and corresponding acceptor moieties are
generally chosen for (a) high efficiency Forster energy transfer;
(b) a large final Stokes shift (>100 nm); (c) shift of the
emission as far as possible into the red portion of the visible
spectrum (>600 nm); and (d) shift of the emission to a higher
wavelength than the Raman water fluorescent emission produced by
excitation at the donor excitation wavelength. For example, a donor
fluorescent moiety can be chosen that has its excitation maximum
near a laser line (for example, Helium-Cadmium 442 nm or Argon 488
nm), a high extinction coefficient, a high quantum yield, and a
good overlap of its fluorescent emission with the excitation
spectrum of the corresponding acceptor fluorescent moiety. A
corresponding acceptor fluorescent moiety can be chosen that has a
high extinction coefficient, a high quantum yield, a good overlap
of its excitation with the emission of the donor fluorescent
moiety, and emission in the red part of the visible spectrum
(>600 nm).
[0043] A skilled artisan will recognize that many fluorophore
molecules are suitable for FRET. In a preferred embodiment,
fluorescent proteins are used as fluorophores. Representative donor
fluorescent moieties that can be used with various acceptor
fluorescent moieties in FRET technology include fluorescein,
Lucifer Yellow, B-phycoerythrin, 9-acridineisothiocyanate, Lucifer
Yellow VS, 4-acetamido-4'-isothio-cyana tostilbene-2,2'-disulfonic
acid, 7 diethylamino-3-(4'-isothiocyanatophenyl)-4-methylcoumarin,
succinimdyl 1-pyrenebutyrate, and
4-acetamido-4'-isothiocyanatostilbene-2-,2'-disulfonic acid
derivatives. Representative acceptor fluorescent moieties,
depending upon the donor fluorescent moiety used, include LC-Red
640, LC-Red 705, Cy5, Cy5.5, Lissamine rhodamine B sulfonyl
chloride, tetramethyl rhodamine isothiocyanate,
rhodamine.times.isothiocyanate, erythrosine isothiocyanate,
fluorescein, diethylenetriamine pentaacetate or other chelates of
Lanthanide ions (e.g., Europium, or Terbium). Donor and acceptor
fluorescent moieties can be obtained, for example, from Molecular
Probes (Junction City, Oreg.) or Sigma Chemical Co. (St. Louis,
Mo.).
[0044] Table 1 lists others examples of chemical fluorophores
suitable for use in the invention, along with their excitation and
emission wavelengths.
[0045] Certain naturally occurring amino acids, such as tryptophan,
are fluorescent. Amino acids may also be derivatized, e.g., by
linking a fluorescent group onto an amino acid (such as linking
AEDANS to a Cys), to create a fluorophore pair for FRET. The
AEDANS-Cys pair is commonly used to detect protein conformational
change and interactions. Some other forms fluorescence groups have
also been used to modify amino acids and to generate FRET within
the protein fragments (e.g., 2.4-dinitrophenyl-lysine with
S--(N-[4-methyl-7-dimethylamino-coumarin-3-yl]-carboxamidomethyl)-cystein-
e).
[0046] In another embodiment, which is especially suitable for
using in live cells, green fluorescent protein (GFP) and its
various mutants are used as the fluorophores. Examples of
fluorescent proteins which vary among themselves in excitation and
emission maxima are listed in Table 1 of WO 97/28261 (Tsien et al.,
1997), which is incorporated herein by reference. These (each
followed by [excitation max./emission max.] wavelengths expressed
in nanometers) include wild-type Green Fluorescent Protein
[395(475)/508] and the cloned mutant of Green Fluorescent Protein
variants P4 [383/44 7], P4-3 [381/445], W7 [433(453)/475(501)], W2
[432(453)/408], S65T [489/511], P4-1 [504(396)/480], S65A
[471/504], S65C [479/507], S65L [484/510], Y66F [360/442], Y66W
[458/480], IOc [513/527], W1B [432(453)/476(503)], Emerald
[487/508] and Sapphire [395/511]. Red fluorescent proteins such as
DsRed (Clontech) having an excitation maximum of 558 nm and an
emission maximum of 583 can also be used. This list is not
exhaustive of fluorescent proteins known in the art; additional
examples are found in the Genbank and SwissPro public
databases.
TABLE-US-00001 TABLE 1 Excitation Emission Fluorophore (nm) (nm)
Color PKH2 490 504 green PKH67 490 502 green Fluorescein (FITC) 495
525 green Hoechst33258 360 470 blue R-Phycoerythrin (PE) 488 578
orange-red Rhodamine (TRITC) 552 570 red Quantum Red .TM. 488 670
red PKH26 551 567 red Texas Red 596 620 red Cy3 552 570 red
[0047] GFP is a 27-30 KD protein, and can be fused with another
protein, e.g., the target protein, and the fusion protein can be
engineered to be expressed in a host cell, such as those of E.
coli. GFP and its various mutants are capable of generating
fluorescence in live cells and tissues. The mutation forms of GFP
has slight amino acid differences within their fluorescence region
which result in shifted spectrum. More mutations of GFP are
expected to be created in the future to have distinct spectra.
Among these GFP variants, BFP-YFP, BFP-CFP, CFP-YFP, GFPDsRed, are
commonly used as FRET donor-acceptor pairs to detect
protein-protein interactions. These pairs are also suitable to
detect protease cleavage of the linker region that links the
pair.
[0048] The use of fluorescent proteins is preferred because they
enable the use of a linker fragment of about 60 amino acids
residues. Longer fragments usually are more sensitive to toxin
recognition and cleavage, thus, results in a higher sensitivity for
detecting toxin. As shown in the examples below, the EC.sub.50 for
BoNT/A and E after 4 hour incubation with CFP-SNAP-YFP are as low
as 15-20 pM (1-2 ng/ml), when measured with a widely used
microplate spectrofluorometer (Spectra Max Gemini, Molecular
Device). EC.sub.50 for BoNT/B and F are about 200-250 pM, and the
sensitivity can be enhanced by increasing incubation time.
[0049] According to one embodiment of the present invention, two
fluorophores are linked together by a linker of suitable length,
such that FRET occurs. The linker is a fragment of a BoNT substrate
protein. When exposed to a BoNT capable of cleaving the linker
fragment, the two fluorophores are separated and FRET is abolished.
The present invention provides accordingly a method for detecting
BoNT by detecting the change in FRET. SNARE proteins from many
species are suitable as substrate proteins for BoNT toxins, because
these proteins are known to be conserved at the amino acid level.
Many of these BoNT substrate proteins are known and available to be
used or modified for use as a suitable linker peptide for the
present invention. Some of the substrate proteins and their GenBank
accession numbers are listed in Table 2.
TABLE-US-00002 TABLE 2 GenBank Protein Origin Accession# syb I
mouse NP-033522 syb 1a human NP 055046 syb I rat AAN85832 syb
African frog AAB88137 syb electric ray A32146 syb California sea
hare P35589 syb Takifugu rubripes AAB94047 syb drosophila AAB28707
syb II mouse NP 033523 syb II African frog P47193 syb II rabbit
AAN14408 syb II rat NP 036795 syb II human AAH19608 syb3 human
AAP36821 SNAP25-1 Zebra fish AAC64289 SNAP25-A human NP 003072
SNAP25a American frog AA013788 SNAP25 mouse XP 130450 SNAP25 rat NP
112253 SNAP25 goldfish 150480 SNAP25-b Zebra fish NP 571509 SNAP25b
American frog AA013789 SNAP25-3 human CAC34535
[0050] Each BoNT toxin is known to cleave a specific peptide bond
between two specific amino acids within the toxin cleavage site.
Table 3 below lists the amino acid pairs for each BoNT toxin. These
pairs of amino acid sequence, however, are not sufficient for toxin
recognition and cleavage. For example, BoNT/A cleaves SNAP-25 at
Q(197)-R(198) of the rat SNAP-25 sequence (GenBank accession No:
NP.sub.--112253), but not Q(15)-R(16). Generally, there is no
conserved amino acid sequence as the recognition site; rather, the
toxins are believed to recognize the tertiary, rather than the
primary, structure of their target protein. Nevertheless, a very
short fragment of the substrate protein is sufficient for toxin
recognition and cleavage, regardless of its species origin, as long
as they have the two amino acid residues at the toxin cleavage site
listed above in Table 3 below.
[0051] The linker protein or peptide can be as long as the
full-length of the BoNT substrate protein. Preferably the linker is
a shorter fragment of the substrate protein. A full-length
substrate linker may be too long for efficient FRET, and a shorter
fragment is more effective and easier to produce than the
full-length protein. On the other hand, as indicated above, the
linker peptide should be above certain minimum length, because
below such a minimum length, cleavage of the linker peptide by the
respective BoNTs becomes inefficient.
TABLE-US-00003 TABLE 3 Peptide Bonds Recognized and Cleaved by BoNT
Toxins Cleavage Putative Minimum Toxin Site Recognition Sequence
BoNT/A Q-R Glu-Ala-Asn-Gln-Arg-Ala-Thr-Lys (SEQ ID NO: 1) BoNT/B
Q-F Gly-Ala-Ser-Gln-Phe-Glu-Thr-Ser (SEQ ID NO: 2) BoNT/C R-A
Ala-Asn-Gln-Arg-Ala-Thr-Lys-Met (SNAP25) (SEQ ID NO: 3) BoNT/C K-A
Asp-Thr-Lys-Lys-Ala-Val-Lys-Phe (Syntaxin) (SEQ ID NO: 4) BoNT/D
K-L BoNT/E R-I Gln-Ile-Asp-Arg-Ile-Met-Glu-Lys (SEQ ID NO: 5)
BoNT/F Q-K Glu-Arg-Asp-Gln-Lys-Leu-Ser-Glu (SEQ ID NO: 6) BoNT/G
A-A
[0052] Using syb II and BoNT/B as an example, Table 4 below
illustrates the relationship between linker-peptide length and
toxin cleavage rate. The full-length rat syb II protein (GenBank
No: NP.sub.--036795) has 116 amino acids, of which amino acid 1-94
at the amino terminus is the cytoplasmic domain and the rest is the
transmembrane domain. As Table 1 makes clear, within certain limit,
a shorter fragment is cleaved by the toxin at a slower rate (data
from Foran et al., Biochemistry 33:15365, 1994).
[0053] As can be seen from Table 4, tetanus neurotoxin (TeNT)
requires a longer fragment (33-94) for optimum cleavage than BoNT/B
(55-94). A fragment consisting of 60-94 has been used in several
studies including several peptide-based toxin assay methods
(Schmidt et al., 2003, supra, and Schmidt et al., 2001, Analytical
Biochemistry, 296: 130-137).
[0054] For BoNT/A, the 141-206 fragment of SNAP-25 is required for
retaining most of the toxin sensitivity (Washbourne et al., 1997,
FEBS Letters, 418:1). There are also other reports that a shorter
peptide, amino acids 187-203 of SNAP25, is sufficient to be cleaved
by BoNT/A (2001). The minimum site for BoNT/A is:
Glu-Ala-Asn-Gln-Arg-Ala-Thr-Lys (SEQ ID NO:1). BoNT/A cleave
Gln-Arg.
TABLE-US-00004 TABLE 4 Relationship Between Syb II fragment Length
and Cleavage Rate syb II Fragment Relative cleavage rate % Relative
cleavage rate Length by BoNT/B by TeNT full length 1-116 100 (%)
100 (%) 33-94 100 100 45-94 121 1.1 55-94 105 0.4 65-94 7 0.3
[0055] Using full-length SNAP-25 as the linker sequence between CFP
and YFP inside PC12 cells, preliminary results indicate that FRET
signals obtained are stronger than those obtained using a shorter
fragment, enough to be detected using a conventional lab
microscope. It is believed that in PC12 cells the rate of cleavage
of full-length SNAP-25 by BoNT/A is faster and more consistent from
cell to cell than the short fragment, likely due to the fact that
full-length SNAP-25 is targeted onto plasma membrane, on to which
the BoNT/A light chain may also be targeted and anchored.
[0056] For BoNT/B, a fragment as short as between residues 60-94
was found to be as effective as a fragment between residues 33-94.
Preferably, a fragment between 33-94 is used for BoNT/B and TeNT.
Both toxins cleave between Gln and Phe, and the minimum sequence
for cleavage is believed to be: Gly-Ala-Ser-Gln-Phe-Glu-Thr-Ser
(SEQ ID NO:2). There are indications that BoNT/B light chain may be
targeted and anchored on synaptic vesicles, it may be desirable to
also target, via signal sequences, a FRET construct of the present
invention onto synaptic vesicles to achieve increased cleavage
efficient inside cells.
[0057] BoNT/C cleaves both SNAP-25 and Syntaxin, and is believed to
cleave at a very slow rate if the substrate is in solution. Native
SNAP-25 and Syntaxin that reside on the cell membrane are cleaved
most efficiently by BoNT/C. The minimum cleavage sequence for
SNAP25 is: Ala-Asn-Gln-Arg-Ala-Thr-Lys-Met (SEQ ID NO:3), where
cleavage occurs between Arg-Ala; for Syntaxin, the minimum cleavage
sequence is Asp-Thr-Lys-Lys-Ala-Val-Lys-Phe (SEQ ID NO: 4), and
cleavage occurs at Lys-Ala.
[0058] BoNT/E requires a minimum sequence of:
Gln-Ile-Asp-Arg-Ile-Met-Glu-Lys (SEQ ID NO: 5), and cleaves between
Arg-Ile.
[0059] BoNT/F cleaves Gln-Lys. Schmidt et al. (Analytical
Biochemistry, 296: 130-137 (2001)) reported that a 37-75 fragment
of syb II retains most of toxin sensitivity, and the minimum
sequence is: Glu-Arg-Asp-Gln-Lys-Leu-Ser-Glu (SEQ ID NO: 6).
[0060] From the above discussion on the minimum cleavage sites and
the relationship between FRET signal strength and linker length,
and between cleavage efficiency and linker length, a person skilled
in the art can easily choose suitable linker length to achieve
optimal balance between FRET signal strength and cleavage
efficiency.
[0061] Preferably, the linker length is anywhere between about 8
a.a. to about 100 a.a., preferably between 10-90, more preferable
between 20-80, between 30-70, between 40-60 a.a. long, depending on
the specific substrate and toxin combination.
[0062] In one embodiment, a linker protein or fragments thereof may
be first purified, or peptides were first synthesized, and then the
fluorescence groups were added onto certain amino acids through
chemical reaction. A fluorescent label is either attached to the
linker polypeptide or, alternatively, a fluorescent protein is
fused in-frame with a linker polypeptide, as described below. The
above discussion makes clear that while short substrate fragments
are desirable for toxin detection specificity, longer fragments may
be desirable for improved signal strength or cleavage efficiency.
is readily recognized that when the substrate protein contains more
than one recognition site for one BoNT, a position result alone
will not be sufficient to identify which specific toxin is present
in the sample. In one embodiment of the present invention, if a
longer substrate fragment, especially a full-length substrate
protein, is used, the substrate may be engineered, e.g., via
site-directed mutagenesis or other molecular engineering methods
well-known to those skilled in the art, such that it contains only
one toxin/protease recognition site. See e.g., Zhang et al., 200,
Neuron 34:599-611 "Ca.sup.2+-dependent synaptotagmin binding to
SNAP-25 is essential for Ca.sup.2+ triggered exocytosis" (showing
that SNAP-25 having mutations at BoNT/E cleavage site (Asp 179 to
Lys) is resistant to BoNT/E cleavage, but behaves normally when
tested for SNARE complex formation). In a preferred embodiment, the
method of the present invention uses a combination of specificity
engineering and length optimization to achieve optimal signal
strength, cleavage efficiency and toxin/serotype specificity.
[0063] In a preferred embodiment, the fluorophores are suitable
fluorescent proteins linked by a suitable substrate peptide. A FRET
construct may then be produced via the expression of recombinant
nucleic acid molecules comprising an in-frame fusion of sequences
encoding such a polypeptide and a fluorescent protein label either
in vitro (e.g., using a cell-free transcription/translation system,
or instead using cultured cells transformed or transfected using
methods well known in the art). Suitable cells for producing the
FRET construct may be a bacterial, fungal, plant, or an animal
cell. The FRET construct may also be produced in vivo, for example
in a transgenic plant, or in a transgenic animal including, but not
limited to, insects, amphibians, and mammals. A recombinant nucleic
acid molecule of use in the invention may be constructed and
expressed by molecular methods well known in the art, and may
additionally comprise sequences including, but not limited to,
those which encode a tag (e.g., a histidine tag) to enable easy
purification, a linker, a secretion signal, a nuclear localization
signal or other primary sequence signal capable of targeting the
construct to a particular cellular location, if it is so
desired.
[0064] As low as 300 nM proteins is enough to generate sufficient
fluorescence signals that can be detected using a microplate
spectrofluorometer. The fluorescence signal change can be traced in
real time to reflect the toxin protease enzymatic activity. Real
time monitoring measures signal changes as a reaction progresses,
and allows both rapid data collection and yields information
regarding reaction kinetics under various conditions. FRET ratio
changes and degrees of cleavage may be correlated, for example for
a certain spectrofluorometer using a method such as HPLC assay in
order to correlate the unit of kinetic constant from the FRET ratio
to substrate concentration.
[0065] The method of the present invention is highly sensitive, and
as a consequence, can be used to detect trace amount of BoNTs in
environmental samples directly, including protoxins inside
Botulinum bacterial cells. Accordingly, the present invention
further provides a method for toxin detection and identification
directly using environmental samples.
[0066] The present invention further provides a method for
screening for inhibitors of BoNTs using the above described in
vitro system. Because of its high sensitivity, rapid readout, and
ease of use, in vitro systems based on the present invention is
also suitable for screening toxin inhibitors. Specifically, a
suitable BoNT substrate-FRET construct is exposed to a
corresponding BoNT, in the presence of a candidate inhibitor
substance, and changes in FRET signals are monitored to determine
whether the candidate inhibits the activities of the BoNT.
[0067] The present invention further provides for a method for
detecting a BoNT using a cell-based system for detecting BoNTs and
further for screening for inhibitors of BoNTs. A suitable BoNT
substrate-FRET construct as described above is expressed inside a
cell, and the cell is then exposed to a sample suspected of
containing a BoNT, and changes in FRET signals are then monitored
as an indication of the presence/absence or concentration of the
BoNT. Specifically, a decrease in FRET signals indicates that the
sample contains a corresponding BoNT.
[0068] Cell-based high-throughput screening assays have the
potential to reveal not only agents that can block proteolytic
activity of the toxins, but also agents that can block other steps
in the action of the toxin such as binding to its cellular
receptor(s), light chain translocation across endosomal membranes
and light chain refolding in the cytosol after translocation.
[0069] The present invention further provides a method for
screening for inhibitors of BoNTs using the above described
cell-based system. Specifically, a cell expressing a suitable BoNT
substrate-FRET construct is exposed to a corresponding BoNT, in the
presence of a candidate inhibitor substance, and changes in FRET
signals are monitored to determine whether the candidate inhibits
the activities of the BoNT. Compared to other in vitro based
screening methods which can only identify direct inhibitors of
toxin-substrate interaction, the cell-based screening method of the
present invention further allows for the screening for inhibitors
of other toxin-related activities, such as but not limited to
toxin-membrane receptor binding, membrane translocation, and
intracellular toxin movement.
[0070] According to a preferred embodiment, a recombinant nucleic
acid molecule, preferably an expression vector, encoding a BoNT
substrate polypeptide and two suitable FRET-effecting fluorescent
pep tides is introduced into a suitable host cell. An ordinarily
skilled person can choose a suitable expression vector, preferably
a mammalian expression vector for the invention, and will recognize
that there are enormous numbers of choices. For example, the pcDNA
series of vectors, such as pCI and pSi (from Promega, Madison,
Wis.), CDM8, pCeo4. Many of these vectors use viral promoters.
Preferably, inducible promoters are used, such as the tet-off and
tet-on vectors from BD Biosciences (San Jose, Calif.).
[0071] Many choices of cell lines are suitable as the host cell for
the present invention. Preferably, the cell is of a type in which
the respective BoNT exhibits its toxic activities. In other words,
the cells preferably displays suitable cell surface receptors, or
otherwise allow the toxin to be translocated into the cell
sufficiently efficiently, and allow the toxin to cleave the
suitable substrate polypeptide. Specific examples include primary
cultured neurons (cortical neuron, hippocampal neuron, spinal cord
motor neuron, etc); PC12 cells or derived PC12 cell lines; primary
cultured chromaphin cells; several cultured neuroblastoma cell
lines, such as murine cholinergic Neuro 2a cell line, human
adrenergic SK-N-SH cell line, and NS-26 cell line. See e.g., Foster
and Stringer (1999), Genetic Regulatory Elements Introduced Into
Neural Stem and Progenitor Cell Populations, Brain Pathology 9:
547-567.
[0072] The coding region for the substrate-FRET polypeptide is
under the control of a suitable promoter. Depending on the types of
host cells used, many suitable promoters are known and readily
available in the art. Such promoters can be inducible or
constitutive. A constitutive promoter may be selected to direct the
expression of the desired polypeptide of the present invention.
Such an expression construct may provide additional advantages
since it circumvents the need to culture the expression hosts on a
medium containing an inducing substrate. Examples of suitable
promoters would be LTR, SV40 and CMV in mammalian systems; E. coli
lac or trp in bacterial systems; baculovirus polyhedron promoter
(polh) in insect systems and other promoters that are known to
control expression in eukaryotic and prokaryotic cells or their
viruses. Examples of strong constitutive and/or inducible promoters
which are preferred for use in fungal expression hosts are those
which are obtainable from the fungal genes for xylanase (xlnA),
phytase, ATP-synthetase, subunit 9 (oliC), triose phosphate
isomerase (tpi), alcohol dehydrogenase (AdhA), a-amylase (amy),
amyloglucosidase (AG--from the glaA gene), acetamidase (amdS) and
glyceraldehyde-3-phosphate dehydrogenase (gpd) promoters. Examples
of strong yeast promoters are those obtainable from the genes for
alcohol dehydrogenase, lactase, 3-phosphoglycerate kinase and
triosephosphate isomerase. Examples of strong bacterial promoters
include SP02 promoters as well as promoters from extracellular
protease genes.
[0073] Hybrid promoters may also be used to improve inducible
regulation of the expression construct. The promoter can
additionally include features to ensure or to increase expression
in a suitable host. For example, the features can be conserved
regions such as a Pribnow Box or a TATA box. The promoter may even
contain other sequences to affect (such as to maintain, enhance or
decrease) the levels of expression of the nucleotide sequence of
the present invention. For example, suitable other sequences
include the Shl-intron or an ADH intron. Other sequences include
inducible elements--such as temperature, chemical, light or stress
inducible elements. Also, suitable elements to enhance
transcription or translation may be present. An example of the
latter element is the TMV 5' signal sequence (see Sleat, 1987, Gene
217: 217-225; and Dawson, 1993, Plant Mol. Biol. 23: 97).
[0074] The expression vector may also contain sequences which act
on the promoter to amplify expression. For example, the SV 40, CMV,
and polyoma cis acting elements (enhancer) and a selectable marker
can provide a phenotypic trait for selection (e.g., dihydrofolate
reductase or neomycin resistance for mammalian cells or
amplicillin/tetracyclin resistance for E. coli). Selection of the
appropriate vector containing the appropriate promoter and
selection marker is well within the level of those skilled in the
art.
[0075] Preferably the coding region for the substrate-FRET
polypeptide is under the control of an inducible promoter. In
comparison to a constitutive promoter, an inducible promoter is
preferable because it allows for suitable control of the
concentration of the reporter in the cell, therefore the
measurement of changes in FRET signals are greatly facilitated.
[0076] For example, FRET reporter can be controlled using the
Tet-on & Tet-off system (BD Biosciences, San Jose, Calif.).
Under the control of this promoter, gene expression can be
regulated in a precise, reversible and quantitative manner.
Briefly, for Tet-on system, the transcription of downstream gene
only happens when doxycycline is present in the culture medium.
After the transcription for a certain period of time, we can change
culture medium to deplete doxycycline, thus, stop the synthesis of
new FRET reporter proteins. Therefore, there is no background from
newly synthesized FRET proteins, and we may be able to see a faster
change after toxin treatment.
[0077] Fluorescent analysis can be carried out using, for example,
a photon counting epifluorescent microscope system (containing the
appropriate dichroic mirror and filters for monitoring fluorescent
emission at the particular range), a photon counting
photomultiplier system or a fluorometer. Excitation to initiate
energy transfer can be carried out with an argon ion laser, a high
intensity mercury (Hg) arc lamp, a fiber optic light source, or
other high intensity light source appropriately filtered for
excitation in the desired range. It will be apparent to those
skilled in the art that excitation/detection means can be augmented
by the incorporation of photomultiplier means to enhance detection
sensitivity. For example, the two photon cross correlation method
may be used to achieve the detection on a single-molecule scale
(see e.g., Kohl et al., Proc. Nat'l. Acad. Sci., 99:12161,
2002).
[0078] A number of parameters of fluorescence output may be
measured. They include: 1) measuring fluorescence emitted at the
emission wavelength of the acceptor (A) and donor (D) and
determining the extent of energy transfer by the ratio of their
emission amplitudes; 2) measuring the fluorescence lifetime of D;
3) measuring the rate of photobleaching of D; 4) measuring the
anisotropy of D and/or A; or 5) measuring the Stokes shift
monomer/excimer fluorescence. See e.g., Mochizuki et al., (2001)
"Spatio-temporal images of grow-factor-induced activation of Ras
and Rapl." Nature 411:1065-1068; Sato et al. (2002) "Fluorescent
indicators for imaging protein phosphorylation in single living
cells." Nat Biotechnol. 20:287-294.
[0079] In another embodiment, the present invention provides a
method for detecting BoNTs using surface plasmon resonance imaging
(SPRi) techniques. Surface plasmon resonance (SPR) is an
established optical technique for the detection of molecular
binding, based on the generation of surface plasmons in a thin
metal film (typically gold) that supports the binding chemistry.
Surface plasmons are collective oscillations of free electrons
constrained in the metal film. These electrons are excited
resonantly by a light field incident from a highly refractive index
prism. The angle of incidence q over which this resonant excitation
occurs is relatively narrow, and is characterized by a reduction in
the intensity of the reflected light which has a minimum at the
resonant angle of incidence qr. The phase of the reflected light
also varies nearly linearly with respect to q in this region. The
value of qr is sensitive to the refractive index of the medium that
resides within a few nanometers of the metal film. Small variations
in the refractive index, due to the binding of a molecule to the
film, or due to the change in the molecular weight of the bound
molecules, may therefore be detected as a variation of this angle.
Many methods are known in the art for anchoring biomolecules to
metal surfaces, for detecting such anchoring and measuring SPRi are
known in the art, see e.g., U.S. Pat. Nos. 6,127,129 and 6,330,062,
and Lee et al., 2001, Anal. Chem. 73: 5527-5531; Brockman et al.,
1999, J. Am. Chern. Soc. 121: 8044-8051; and Brockman et al., 2000,
Annu. Rev. Phys. Chem. 51: 41-63, all of which are incorporated
herein by reference in their entirety.
[0080] In practice a layer of BoNT target peptides may be deposited
on the metal. A sample suspected of containing a corresponding BoNT
is applied to the composite surface, and incubated to allow the
toxin, if present, to cleave the bound target peptides. The
cleavage will result in the decrease of the molecular weight of the
peptide bound to the metal surface, which decrease can then be
detected using standard equipments and methods. A decrease in the
thickness of the bound layer indicates that cleavage has occurred
and in consequence, the sample contains the toxin corresponding to
the target peptide.
[0081] Alternatively, binding of a BoNT protein to its
corresponding substrate peptide, which is anchored to the metal
surface, will also cause a change in the refractive index and can
be detected by known SPRi techniques and apparati.
[0082] Many methods are known in the art for anchoring or
depositing protein or peptides molecules on to a metal surface. For
example, add an extra Cys residue can be added to the end of the
peptide, which can then be cross-linked onto the metal surface.
Indirectly, an antibody can be anchored first to the metal surface,
and to which antibody the toxin substrate can be bound. Indirect
anchoring via antibodies is suitable for the present invention so
long as the antibody-substrate binding does not prevent the toxin
from recognizing and accessing the cleavage site of the substrate.
Furthermore, nickel-NTA or glutathione that can be used to hold
down his6 or GST fusion proteins, respectively. Additional
information regarding anchoring peptide to metal surface may be
found in Wegner et al., (2002) Characterization and Optimization of
Peptide Arrays for the Study of pitopeAntibody Interactions Using
Surface Plasmon Resonance Imaging" Analytical Chemistry
74:5161-5168, which is also incorporated herein by reference in its
entirety.
[0083] Changes of about 10-16 bases in a nucleic acid molecule,
corresponding to 3,000 to 6,400 din molecular weight, can be easily
detected by SPRi. This implies that a change of as few as 16 amino
acid residues in a peptide molecule can be detected. This high
sensitivity allows the anchoring of a short peptide substrate onto
the surface, instead of using the full-length toxin substrate
proteins. Short peptide fragments are preferred because they are
more stable, less expensive to prepare and allow higher reaction
specificity.
EXAMPLES
Materials and Methods
[0084] Construction of Bio-Sensor DNA Constructs:
[0085] YFP cDNA (Clontech) was inserted into the pECFP-C1 vector
(Clontech) using EcoRI and BamHI site to generate pECFP-YFP vector.
cDNA encoding amino acid 33-94 of rat syb II was amplified using
PCR and into pECFP-YFP vector using Xhoi and EcoRI sites, which are
between CFP and YFP gene, to generate CFP-Sybll-YFP (also referred
to as CFP-Syb (33-94)-YFP) construct that can be used to transfect
cells. Construct CFPSNAP-25-YFP (also referred to as CFP-SNAP-25
(141-206)-YFP) was built using the same method, but using residues
141-206 of SNAP-25. A construct (CFPSNAP25FL-YFP) with full-length
rat SNAP-25B as the linker was also made. In order to purify
recombinant chimera proteins using bacteria E. coli, we also moved
CFP-Sybll-YFP gene and CFP-SNAP-25-YFP gene from pECFP-YFP vector
into a pTrc-his (Invitrogen) vector using Nhel and BamHI sites.
[0086] The mutation of four Cys residues of SNAP-25 to Ala was
accomplished by site-directed mutagenesis using PCR, and the
fragment was then inserted between CFP and YFP as described above.
SNAP-25(83-120)-CFP-SNAP-25(141-206)-YFP were built by first
inserting the cDNA fragment that encoding the residues 83-120 of
SNAP-25 into the Xhoi/EcoRI sites of pEYFP-N1(Clontech), and then
subcloning CFP-SNAP-25(141-206) cDNA into downstream sites using
EcoRI/BamHI. YFPSyb(FL)-CFP was built by first inserting a full
length Syb II cDNA into pECFP-C1 vectors at EcoRI and BamHI sites,
and then inserting a full length YFP cDNA into the upstream at Xhoi
and EcoRI sites. YFP-Syb(33-116)-CFP was built by replacing
full-length Syb in YFP-Syb(FL)-CFP construct via EcoRI/BamHI sites.
All cDNA fragments were generated via PCR.
[0087] Protein Purification and Fluorescence Spectra
Acquisition:
[0088] His5-tagged CFPSybll-YFP and CFP-SNAP-25-YFP proteins were
purified as described (Chapman et al., A novel function for the
second C2 domain of synaptotagmin. Ca.sup.2+ triggered
dimerization. J. Biol. Chem. 271, 5844-5849 (1996)). Proteins were
dialyzed using HEPES buffer (50 mM HEPES, pH 7.1) overnight. 300 nM
protein was put into a cuvette in a total volume of 500 .mu.l HEPES
buffer that contains 2 mM DTT and 10 .mu.M ZnCl.sub.2. The emission
spectra from 450 nM to 550 nM was collected using a PTIQM-1
fluorometer. The excitation wavelength is 434 nM, which is the
optimal excitation wavelength for CFP.
[0089] Activation of Botulinum Neurotoxin and Monitoring the
Cleavage of Biosensor Proteins:
[0090] BoNTIA, B, E or F was incubated with 2 mM DTT and 10 .mu.M
ZnCl.sub.2 for 30 minutes at 37.degree. C. to reduce the toxin
light chain from the heavy chain. For experiments using a PTIQM-1
fluorometer, 10 nM BoNT/A, E, or 50 nM BoNT/B, F were added into
the cuvette that contains 300 nM corresponding FRET sensors. The
emission spectra were collected as described above, at certain time
intervals after adding toxins (e.g., 0, 2, 5, 10, 30, 60, 90
minutes). At the end of each emission scan, a small portion of the
sample (30 .mu.l) was collected, mixed with SDS-loading buffer, and
later subjected onto a SDS-PAGE gel. The sensor protein and the
cleavage products were visualized with an anti-hisa antibody using
enhanced chemiluminescence (ECL) (Pierce).
[0091] For experiments using a spectrofluorometer, 300 nM FRET
sensor protein were prepared in a 100 .mu.l volume per well in a
96-well plate. Various concentrations of BoNTs were added into each
well, and samples were excited at 434 nM. The emission spectra of
YFP channel (527 nM), and CFP channel (470 nM) were collected for
90 minutes at 30 second intervals. The FRET ratio is determined by
the ratio between YFP channel and CFP channel for each data
point.
[0092] Measure the FRET Ratio Change in Live Cells after Toxin
Treatment
[0093] DNA constructs pECFP-SNAP25-YFP were used to transfect PC12
cells using electroporation (Bio-Rad). Cells were passed 24 hours
after the transfection, and 50 nM BoNT/A were added into the
culture medium. After incubation for 72 hours with toxin, the
fluorescence images of cells that express FRET sensor were
collected using a Nikon TE-300 microscope. Two images of each cell
(CFP channel and FRET channel) were collected using the following
filter set (Chroma Inc.): CFP channel: CFP excitation filter
(436/10 nm), JP4 beamsplitter, CFP emission filter: (470/30 nm);
FRET channel: CFP excitation filter (436/10 nm), JP4 beamsplitter,
YFP emission filter (535/30 nm). The background (the areas that
contain no cells) was subtracted from each image, and the
fluorescence intensities of CFP channel and FRET channel of each
cell were compared using MetaMorph software. The FRET ratio is
determined by the intensity ratio between FRET channel and CFP
channel as previous described. Control cells were not treated with
toxins but were analyzed in an identical manner. To test BoNT/B in
live cells, we transfected a PC12 cell line that express syt II
using the same procedure as described above.
[0094] Live cell imaging and FRET analysis: PC12 cells were
transfected with various cDNA constructs indicated in the Figure
legends via electroporation (Bio-Rad, CA). The fluorescence images
were collected using a Nikon TE-300 microscope with a 100.times.
oil-immersed objective. CFP/YFP FRET in live cells was quantified
using an established method with the three-filter set method
(Gordon et al., Quantitative fluorescence resonance energy transfer
measurements using fluorescence microscopy. Biophys J. 74,
2702-2713 (1998); Sorkin et al., Interaction of EGF receptor and
grb2 in living cells visualized by fluorescence resonance energy
transfer (FRET) microscopy. Curr. Biol. 10, 1395-1398 (2000)). In
brief, three consecutive images were acquired for each cell,
through three different filter sets: CFP filter (excitation, 436/10
nm; emission, 470/30 nm), FRET filter (excitation, 436/10 nm;
emission, 535/30 nm), and YFP filter (excitation, 500/20 nm,
emission, 535/30 nm). A JP4 beam splitter (Set ID 86000, Chroma
Inc. VT) was used. All images were acquired with exact the same
settings (4.times.4 Binning, 200 ms exposure time). In order to
exclude the concentration-dependent FRET signal that can arise from
high expression level of fluorescence proteins, only cells with CFP
and YFP intensities below the half value of the maximal 12-bit
scale (1-2097 gray scale) were counted in our experiments (Miyawaki
et al., Monitoring protein conformations and interactions by
fluorescence resonance energy transfer between mutants of green
fluorescent protein. Methods Enzymol. 327, 4 72-500 (2000);
Erickson et al., DsRed as a potential FRET partner with CFP and
GFP. Biophys J 85, 599-611 (2003)). The background (from areas that
did not contain cells) was subtracted from each raw image before
FRET values were calculated. The fluorescence intensity values of
each image were then obtained and compared. PC12 cells transfected
with CFP or YFP alone were first tested in order to obtain the
crosstalk value for these filter sets. The FRET filter channel
exhibits about 56-64% of bleed-through for CFP, and about 24% for
YFP. There is virtually no crosstalk for YFP while using the CFP
filter, or for CFP while using the YFP filter, which greatly
simplified the FRET calculations. For cells expressing toxin
sensors, the "corrected FRET` value was calculated using the
following equation: corrected FRET=FRET (CFP.times.0.60)
(YFP.times.0.24), where FRET, CFP and YFP correspond to
fluorescence intensity of images acquired through FRET, CFP and YFP
filter sets, respectively. The average fraction of bleed-through
coming from CFP and YFP fluorescence are 0.6 and 0.24,
respectively, when acquiring image through the FRET filter set.
Because toxin cleavage of the CFP-SNAP25FL-YFP sensor resulted in
the membrane dissociation of YFP fragment, which was degraded in
the cytosol (FIG. 7C, E), the FRET ratio used in our data analysis
is calculated as normalizing "corrected FRET` value to only the CFP
fluorescence intensity (corrected FRET/CFP). We note that the CFP
intensity in these calculations was an underestimate due to donor
quenching if FRET occurred. However, it has been reported the
decrease in CFP fluorescence because of donor quenching is only
about 5-10% (Gordon et al., Quantitative fluorescence resonance
energy transfer measurements using fluorescence microscopy. Biophys
J 74, 2702-2713 (1998); Sorkina et al., Oligomerization of dopamine
transporters visualized in living cells by fluorescence resonance
energy transfer microscopy. J. Biol. Chem. 278, 28274-28283
(2003)). All images and calculations were performed using MetaMorph
software (Universal Imaging Corp., PA).
[0095] For experiments involving toxin treatment, indicated
holotoxins were added to the cell culture media for various time,
and cells were then analyzed as described above. Control cells were
transfected with toxin sensors but not treated with toxins, and
they were analyzed in an identical manner.
[0096] Immunoblot Analysis of Toxin Substrate Cleavage:
[0097] Wild type PC12 cells or Syt II+PC12 cells (Dong et al.,
2003, supra) were transfected with various toxin sensor cDNA
constructs as indicated in the Figure legends. BoNT/A or B was
added to the culture medium 24 hours after transfection and cells
were incubated for another 48 hours. Cells were then harvested and
cell lysates were subject to immunoblot analysis as described
previously. Control cells were transfected with the same cDNA
constructs and assayed in parallel except they were not treated
with toxins. One third of the control cell lysates were treated
with toxins in vitro (200 nM BoNT/A or B, 30 minutes at 37.degree.
C.), and subjected to immunoblot analysis. Endogenous SNAP-25 and
transfected CFP-SNAP-25-YFP sensors were assayed using an
anti-SNAP-25 antibody 26. CFP-SNAP-25-YFP and CFP-Sybll-YFP sensor
proteins were also assayed using a GFP polyclonal antibody (Santa
Cruz., Calif.). An anti-his6 antibody (Qiagen Inc., CA) was used to
assay for recombinant sensor protein cleavage.
Example 1
Bio-Sensors Based on CFP-YFP FRET Pair and Botulinum Neurotoxin
Protease Activity
[0098] In order to monitor botulinum neurotoxin protease activity
using FRET method, CFP and YFP protein are connected via syb II or
SNAP-25 fragment, denoted as CFP-Sybll-YFP and CFP-SNAP-25-YFP,
respectively (FIG. 1A). Short fragments of toxin substrates were
used instead of the full-length protein to optimize the CFP-YFP
energy transfer efficiency, which falls exponentially as the
distance increases. However, the cleavage efficiency by BoNTs
decreases significantly as the target protein fragments get too
short. Therefore, the region that contain amino acid 33-96 of
synaptobrevin sequence was used because it has been reported to
retain the same cleavage rate by BoNT/B, F, and TeNT as the full
length synaptobrevin protein does. Similarly, residues 141-206 of
SNAP-25 were selected to ensure that the construct can still be
recognized and cleaved by BoNT/A and E.
[0099] The FRET assay is depicted in FIG. 1B. When excited at 434
nM (optimal excitation wavelength for CFP), the CFP-Sybll-YFP and
CFP-SNAP-25-YFP chimera protein would elicit YFP fluorescence
emission because of the FRET between CFP-YFP pair. Botulinum
neurotoxins can recognize and cleave the short substrate fragments
between CFP and YFP, and FRET signal will be abolished after CFP
and YFP are separated. Because these chimera proteins can be
expressed in living cells, they are also denoted as "bio-sensor"
for botulinum neurotoxins.
[0100] We first purified his5-tagged recombinant chimera protein of
CFP-Sybll-YFP, and CFP-SNAP-25-YFP, and characterized their
emission spectra using a PTIQM-1 fluorometer. As expected, both
bio-sensor proteins show an obvious YFP fluorescence peak at 525 nM
when their CFP were excited at 434 nM (FIG. 2B, C). On the
contrary, the YFP alone only gave small fluorescence signal when
excited directly at 434 nM (FIG. 2A). The mixture of individual CFP
and YFP doesn't have the peak emission at 525 nM (FIG. 2A). This
demonstrated the YFP fluorescence peak observed using bio-sensor
proteins resulted from FRET. Because the FRET ratio (YFP
fluorescence intensity/CFP fluorescence intensity) was affected by
many factors, such as buffer composition, the Zn.sup.2+
concentration and the concentration of reducing agents (data not
shown), the experiments thereafter were all carried out in the same
buffer conditions (50 mM Hepes, 2 mM DTT, 10 .mu.M ZnCl.sub.2, pH
7.1). 2 mM DTT and 10 .mu.M Zn.sup.2+ were added to optimize the
botulinum neurotoxin protease activity.
Example 2
Monitoring the Cleavage of Bio-Sensor Proteins by Botulinum
Neurotoxins In Vitro
[0101] 300 nM chimera protein CFP-Sybll-YFP was mixed with 50 nM
prereduced BoNT/B holotoxin in a cuvette. The emission spectra were
collected at different time points after adding BoNT/B (0, 2, 5,
10, 30, 60 minutes, etc). At the end of each scan, a small volume
of sample (30 .mu.l) was taken out from the cuvette and mixed with
SDS-loading buffer. These samples later were subjected to SDS-page
gels and the cleavage of chimera proteins were visualized using an
antibody against the his6 tag in the recombinant chimera protein.
As shown in FIG. 3A, the incubation of bio-sensor protein with
BoNT/B resulted in a decrease of YFP emission and increase of CFP
emission. The decrease of FRET ratio is consistent with the degree
of cleavage of the chimera protein by BoNT/B (FIG. 3A, low panel).
This result demonstrates the cleavage of the bio-sensor protein can
be monitored in real time by recording the change in its FRET
ratio.
[0102] The same assay was performed to detect CFP-Sybll-YFP
cleavage by BoNT/F, and CFP-SNAP-25-YFP cleavage by BoNT/A or E
(FIG. 3B, C, D). Similar results were obtained with the experiment
using BoNT/B. In all cases, we observed the same kinetics of
cleavage of the substrate using both the optical readout and the
immunoblot blot analysis. BoNT/A and E cleaved their chimera
substrate much faster than BoNT/B and F did in our assay. Thus,
only 10 nM BoNT/A or E were used in order to record the change
occurred within first several minutes. The cleavage of chimera
protein is specific, since mixing BoNT/B and F with
CFP-SNAP-25-YFP, or mixing BoNT/A and E with CFP-Sybll-YFP did not
result in any change in FRET ratio or substrate cleavage (data not
shown).
Example 3
Monitoring Botulinum Neurotoxin Protease Activity in Real Time
Using a Microplate Spectrofluorometer
[0103] The above experiments demonstrated that the activity of
botulinum neurotoxin can be detected in vitro by monitoring the
changes of the emission spectra of their target bio-sensor
proteins. We then determined if we could monitor the cleavage of
bio-sensor proteins in real time using a microplate reader--this
will demonstrate the feasibility to adapt this assay for future
high-throughput screening. As shown in FIG. 4A, 300 nM
CFP-SNAP-25-YFP chimera protein was mixed with 10 nM BoNT/A in a
96-well plate. CFP was excited at 436 nm and the fluorescence of
the CFP channel (470 nM) and YFP channel (527 nM) were recorded
over 90 minutes at 30 second intervals. Addition of BoNT/A resulted
in the decrease of YFP channel emission and the increase of CFP
channel emission. This result enabled us to trace the kinetics of
botulinum neurotoxin enzymatic activity in multiple samples in real
time. For instance, as shown in FIG. 4B, various concentration of
BoNT/A or E were added into 300 nM CFP-SNAP-25-YFP, and the FRET
ration of each sample were monitored simultaneously as described in
FIG. 4A. Changes in the FRET ratio were related to the toxin
concentration--higher toxin concentration resulted in faster
decrease of the FRET ratio. This change in FRET ratio is specific,
because no significant change was detected for either
CFP-SNAP-25-YFP alone (FIG. 4C, left panel) or a mixture of CFP and
YFP (FIG. 4C, right panel).
[0104] Although it would be difficult to correlate the FRET ratio
change with the actual cleavage of the bio-sensor proteins at this
stage, this method still provides the easiest way to compare toxin
cleavage kinetics among multiple samples when these samples were
prepared and scanned simultaneously--it is particularly useful for
high throughput screening toxin inhibitors because it would provide
information about how the inhibitor affects toxin enzymatic
activities. We note that the unit for each kinetic parameter would
be the FRET ratio instead of substrates concentration in these
cases.
[0105] The sensitivity of this FRET based assay is determined by
incubating various concentrations of toxins with fixed amount of
their target bio-sensor proteins for certain period of time. The
FRET ratio is recorded using a microplate spectra-fluorometer, and
plotted against toxin concentration. As shown in FIG. 5A, this
method has similar sensitivities for BoNT/A and E after 4 hours
incubation (EC.sub.50 for BoNT/A is 15 pM, and for BoNT/E is 20 pM,
upper panel), and incubation for 16 hours slightly increased the
detection sensitivity (FIG. 5A, lower panel). The sensitivities for
BoNT/B and F are close to each other, but are about 10 times lower
than BoNT/A and E with 4 hours incubation (FIG. 5B, upper panel,
EC.sub.50 is 242 pM for BoNT/B, and 207 pM for BoNT/F). Extension
of the incubation period to 16 hours increased the ability to
detect BoNT/B and BoNT/F activity by 8-fold and 2-fold,
respectively.
Example 4
Monitoring Botulinum Neurotoxin Activity in Live Cells
[0106] CFP-YFP based bio-sensor assay not only can be used to
detect botulinum neurotoxin in vitro, but also can be used in live
cells. To establish this application, PC12 cells were transfected
with CFP-SNAP-25-YFP. PC12 cell is a neuroendocrine cell line that
is able to take up BoNT/A and E. Transfected cells were incubated
with BoNT/A (50 nM) for 72 hours, and the FRET ratio of cells that
express CFP-SNAP-25-YFP were recorded using a epi-fluorescence
microscope equipped with special filter sets for CFP-YFP FRET
detection. Briefly, the FRET ratio is calculated as the ratio
between the fluorescence intensity of the images from the same cell
collected using two filter sets, one for CFP (excitation 437
nm/emission 470 nm), and another for FRET (excitation 437
nm/emission 535 nm). A total number of 53 cells were collected, and
compared to the same number of control cells which express the same
bio-sensor protein but were not exposed to toxin. As shown in FIG.
6A, BoNT/A treatment for 72 hours significantly decreased FRET
ratio for the cell population that was examined (p<1.4 7E-05).
Wild type PC12 cells are not sensitive to BoNT/B and F.
[0107] A PC12 cell line was recently created that expresses both
synaptotagmin II, a receptor for BoNT/B, and CFP-Sybll-YFP
bio-sensor. These cells were used to detect BoNT/B action in live
cells. As shown in FIG. 6B, BoNT/B (30 nM) treatment for 72 hours
significantly decreased FRET ratio of the bio-sensor proteins
expressed in cells (p<2.1E-10). We note that there were still
large number of cells that do not appear to change FRET ratio for
both bio-sensor proteins. There are several possible explanations.
First, the toxin/bio-sensor protein ratio may be too low in these
cells, thus, the significant cleavage of bio-sensor proteins may
require a longer incubation time. Second, these cells may have high
level of protein synthesis activity, thus new bio-sensor protein
was synthesis quickly to replace cleavage products. Nevertheless,
these experiments demonstrate the feasibility to adopt this FRET
based assay in living cells and neurons.
Example 5
Cell Based Detection of BoNTs
[0108] To carry out cell-based studies, we first transfected PC12
cells with CFPSNAP-25(141-206)-YFP sensor (FIG. 7A). The FRET
signal in living cells was acquired using an established
three-filter set method with an epi-fluorescence microscope as
shown in FIG. 2A (Gordon, et al., Quantitative fluorescence
resonance energy transfer measurements using fluorescence
microscopy. Biophys. J. 74, 2702-2713 (1998); and Sorkin et al.,
Interaction of EGF receptor and grb2 in living cells visualized by
fluorescence resonance energy transfer (FRET) microscopy. Curr.
Biol. 10, 1395-1398 (2000), as described above in the Materials and
Methods Section. Transfected PC12 cells were treated with 50 nM
BoNT/A for 96 hours. Their fluorescence images were analyzed and
the normalized FRET ratio (corrected FRET/CFP) was plotted in FIG.
7B. Although SNAP-25(141-206) fragments were reported to have
similar toxin cleavage rates as full length SNAP-25 in vitro
(Washbourne et al., Botulinum neurotoxin types A and E require the
SNARE motif in SNAP-25 for proteolysis. FEBS Lett. 418, 1-5
(1997)), CFP-SNAP-25(141-206)YFP appeared to be a poor toxin
substrate in living cells. Incubation of BoNT/A (50 nM) for 96
hours exhibited a small (but significant) shift in the FRET ratio
among the cell population, indicating the cleavage is inefficient
in cells, and this sensor is not practical for toxin detection in
cells.
[0109] Surprisingly, we found that using full length SNAP-25 as the
linker between CFP and YFP yielded significant levels of FRET when
expressed in PC12 cells, despite the fact that SNAP-25 is 206 amino
acid residues long (FIGS. 7C, and 8C). This FRET signal is
dependent on the membrane anchor of SNAP-25 since mutation of the
palmitoylation sites within SNAP-25 (Cys 85, 88, 90, 92 Ala) (Lane
& Liu, Characterization of the palmitoylation domain of
SNAP-25. J. Neurochem. 69, 1864-1869 (1997); Gonzalo et al.,
SNAP-25 is targeted to the plasma membrane through a novel
membrane-binding domain. J Biol. Chem. 274, 21313-21318 (1999);
Koticha et al., Plasma membrane targeting of SNAP-25 increases its
local concentration and is necessary for SNARE complex formation
and regulated exocytosis. J. Cell Sci. 115, 3341-3351 (2002);
Gonelle-Gispert et al., Membrane localization and biological
activity of SNAP-25 cysteine mutants in insulin-secreting cells. J.
Cell Sci. 113 (Pt 18), 3197-3205 (2000)), which results in the
cytosolic distribution of the protein (denoted as
CFP-SNAP-25(Cys-Ala)-YFP), significantly reduced the FRET signal
(FIG. 7D). This finding suggests the membrane anchoring of SNAP-25
may result in conformational changes that bring N-terminus and
C-terminus of SNAP-25 close to each other. This sensor is denoted
as CFP-SNAP-25(FL)-YFP. Incubation of cells that express
CFP-SNAP-25(FL)-YFP with 50 nM BoNT/A resulted in a progressive
decrease in the FRET ratio over time (FIG. 7C, right panel). BoNT/A
cleavage of the sensor resulted in two fragments: an N-terminal
fragment of SNAP-25 tagged with CFP that remained on the membrane
(FIG. 2C, middle panel), and a short C-terminal fragment of SNAP-25
tagged with YFP that was expected to redistribute into the cytosol
after toxin cleavage. Interestingly, we noticed the C-terminal
cleavage product, SNAP-25(198-206)-YFP, largely disappeared after
the toxin cleavage (FIG. 2C, the "YFP" frame in the middle panel).
This observation was confirmed by immunoblot analysis (FIG. 7E),
indicating this soluble fragment was degraded much faster than the
other fragment that is retained on the membrane. This unexpected
result provides an alternative way to detect toxin activity in
living cells by simply monitoring the ratio between CFP and YFP
fluorescence.
[0110] It was recently reported that the BoNT/A light chain
contains membrane localization signals and targets to the plasma
membrane in differentiated PC12 cells (Fernandez-Salas et al.,
Plasma membrane localization signals in the light chain of
botulinum neurotoxin. Proc. Natl. Acad. Sci. USA 101, 3208-3213
(2004). Thus, we investigated the possibility that membrane
anchoring of SNAP-25 is critical for efficient cleavage by BoNT/A.
To directly test this idea, CFP-SNAP-25(Cys-Ala)-YFP, which was
distributed in the cytosol (FIG. 7D), and CFP-SNAP-25(FL)-YFP,
which was anchored to the plasma membrane, were used to transfect
PC12 cells and assayed in parallel for the cleavage by BoNT/A in
cells. As indicated in FIG. 7E, incubation of cells with BoNT/A
resulted in the cleavage of significant amount of
CFP-SNAP-25(FL)-YFP sensor, while there was no detectable cleavage
of CFP-SNAP-25 (Cys-Ala)-YFP under the same assay conditions.
[0111] To further confirm this finding, we also targeted the
inefficient sensor that contains SNAP-25(141-206) to the plasma
membrane using a short fragment of SNAP-25 (residues 83-120, which
can target GFP to plasma membranes (Gonzalo et al., SNAP-25 is
targeted to the plasma membrane through a novel membrane binding
domain. J. Biol. Chem. 274, 21313-21318 (1999)) (FIG. 8A). As
expected, anchoring of the CFP-SNAP-25(141-206)-YFP sensor to the
plasma membrane resulted in efficient cleavage by BoNT/A (FIG. 8B).
These findings indicate that the sub-cellular localization of
SNAP-25 is indeed critical for the efficient cleavage by BoNT/A in
cells.
[0112] We next tested whether the CFP-Syb(33-94)-YFP sensor could
be used to assay BoNT/B activity in cells. For these studies, we
used a PC12 cell line that expresses synaptotagmin II, which
mediates BoNT/B entry into cells (Dong et al., Synaptotagmins I and
II mediate entry of botulinum neurotoxin B into cells. J. Cell
Biol. 162, 1293-1303 (2003)). As shown in FIG. 9A (upper panel),
transfected CFPSyb(33-94)-YFP is a soluble protein present
throughout the cells. Similar to the case of
CFP-SNAP-25(141-206)-YFP, BoNT/B (50 nM, 96 hr) treatment only
slightly decreased the FRET ratio (FIG. 9A, lower panel),
indicating that the cleavage of this sensor is also inefficient in
cells.
[0113] Our experience with the BoNT/A sensor prompted us to
investigate whether the sub-cellular localization of Syb is
important for cleavage of Syb by BoNT/B. Endogenous Syb is 116
amino acid residues long, and resides on secretory vesicles through
a single transmembrane domain (residues 95-116, FIG. 9B). In order
to ensure proper vesicular localization, we used full-length Syb as
the linker between CFP and YFP. Because CFP is relatively resistant
to the acidic environment in the vesicle lumen (Tsien, The green
fluorescent protein. Annu. Rev Biochem 67, 509-544 (1998), the CFP
was fused to the C-terminus of Syb and is predicted to reside
inside vesicles, while the YFP was fused to the N-terminus of Syb
and faces the cytosol (FIG. 9B). This sensor is denoted as
YFP-Syb(FL)-CFP. Since FRET is unlikely to occur between CFP and
YFP here, a novel approach was taken to monitor the cleavage by
BoNT/B. Cleavage of YFP-Syb(FL)-CFP sensor would generate two
fragments, including a N-terminal portion tagged with YFP, which
would be released into the cytosol, and a short C-terminal portion
tagged with CFP that is restricted inside vesicles. Thus, toxin
activity would result in the redistribution of YFP fluorescence in
cells. YFP-Syb(FL)-CFP proved to be an efficient toxin sensor in
cells. As indicated in FIG. 9C, treatment with BoNT/B resulted in
the dissociation of YFP from the vesicles and its redistribution
into the cytosol. We note that the soluble YFP fragment was able to
enter the nucleus, where there was no fluorescence signal prior to
toxin treatment (FIG. 9C), providing an area where the YFP
redistribution can be readily detected. Unlike the FRET assay, this
detection method does not require a short distance between CFP and
YFP, thus providing a novel approach to monitor protease activity
in living cells.
[0114] To exclude the possibility that the inefficient cleavage of
the sensor containing Syb(33-94) fragment is due to the lack of the
N-terminal 32 amino acid, a sensor containing the truncated form of
Syb that lacks the N-terminal 32 residues (denoted as
CFP-Syb(33-116)-YFP) was built. This sensor contains the same
cytosolic domain of Syb with the inefficient sensor (residues
33-94), plus the transmembrane domain (residues 95-116), which
anchors it to vesicles. When assayed in parallel, significant
amount of CFP-Syb(33-116)-YFP was cleaved by BoNT/B after 48 hours,
while there was no detectable cleavage of CFP-Syb(33-94)YFP (FIG.
9D), indicating the vesicular localization determines the cleavage
efficiency in cells. This conclusion is further supported by a
recent report that the presence of negatively charged lipid
mixtures enhanced the cleavage rate of Syb by BoNT/B, TeNT, and
BoNT/F in vitro (Caccin et al., V AMP/synaptobrevin cleavage by
tetanus and botulinum neurotoxins is strongly enhanced by acidic
liposomes. FEBS Lett. 542, 132-136 (2003). It is possible that
toxins may favor binding to vesicular membranes in cells, thus
increasing the chance to encounter Syb localized on vesicles.
Alternatively, it is also possible that the presence of the
transmembrane domain may be critical for maintaining a proper
conformational state of Syb that is required for efficient
cleavage.
[0115] Using full length SNAP-25 and Syb II as the linkers provided
excellent optical reporters that can mirror endogenous substrate
cleavage in living cells. These two reporters should be able to
detect all seven botulinum neurotoxins and tetanus neurotoxin
(TeNT). The substrate linker sequence can be readily modified to
achieve specific detection for individual BoNTs or TeNT by changing
the length or mutating other toxin cleavage or recognition sites.
These toxin biosensors should enable the cell-based screening of
toxin inhibitors, and the study of toxin substrate recognition and
cleavage in cells.
[0116] The foregoing description and examples have been set forth
merely to illustrate the invention and are not intended to be
limiting. Since modifications of the disclosed embodiments
incorporating the spirit and substance of the invention may occur
to persons skilled in the art, the invention should be construed
broadly to include all variations falling within the scope of the
appended claims and equivalents thereof. All references cited
hereinabove and/or listed below are hereby expressly incorporated
by reference.
Sequence CWU 1
1
11123PRTArtificial SequencePutative Minimum Recognition Sequence
for BoNT/A 1Gly Leu Ala Leu Ala Ala Ser Asn Gly Leu Asn Ala Arg Gly
Ala Leu 1 5 10 15 Ala Thr His Arg Leu Tyr Ser 20 223PRTArtificial
SequencePutative Minimum Recognition Sequence for BoNT/B 2Gly Leu
Tyr Ala Leu Ala Ser Glu Arg Gly Leu Asn Pro His Glu Gly 1 5 10 15
Leu Thr His Arg Ser Glu Arg 20 324PRTArtificial SequencePutative
Minimum Recognition Sequence for BoNT/C (SNAP25) 3Ala Leu Ala Ala
Ser Asn Gly Leu Asn Ala Arg Gly Ala Leu Ala Thr 1 5 10 15 His Arg
Leu Tyr Ser Met Glu Thr 20 424PRTArtificial SequencePutative
Minimum Recognition Sequence for BoNT/C (Syntaxin) 4Ala Ser Pro Thr
His Arg Leu Tyr Ser Leu Tyr Ser Ala Leu Ala Val 1 5 10 15 Ala Leu
Leu Tyr Ser Pro His Glu 20 523PRTArtificial SequencePutative
Minimum Recognition Sequence for BoNT/E 5Gly Leu Asn Ile Leu Glu
Ala Ser Pro Ala Arg Gly Ile Leu Glu Met 1 5 10 15 Glu Thr Gly Leu
Leu Tyr Ser 20 621PRTArtificial SequencePutative Minimum
Recognition Sequence for BoNT/F 6Gly Leu Ala Arg Gly Ala Ser Pro
Gly Leu Asn Leu Tyr Ser Leu Glu 1 5 10 15 Ser Glu Arg Gly Leu 20
7206PRTHomo sapiens 7Met Ala Glu Asp Ala Asp Met Arg Asn Glu Leu
Glu Glu Met Gln Arg 1 5 10 15 Arg Ala Asp Gln Leu Ala Asp Glu Ser
Leu Glu Ser Thr Arg Arg Met 20 25 30 Leu Gln Leu Val Glu Glu Ser
Lys Asp Ala Gly Ile Arg Thr Leu Val 35 40 45 Met Leu Asp Glu Gln
Gly Glu Gln Leu Asp Arg Val Glu Glu Gly Met 50 55 60 Asn His Ile
Asn Gln Asp Met Lys Glu Ala Glu Lys Asn Leu Lys Asp 65 70 75 80 Leu
Gly Lys Cys Cys Gly Leu Phe Ile Cys Pro Cys Asn Lys Leu Lys 85 90
95 Ser Ser Asp Ala Tyr Lys Lys Ala Trp Gly Asn Asn Gln Asp Gly Val
100 105 110 Val Ala Ser Gln Pro Ala Arg Val Val Asp Glu Arg Glu Gln
Met Ala 115 120 125 Ile Ser Gly Gly Phe Ile Arg Arg Val Thr Asn Asp
Ala Arg Glu Asn 130 135 140 Glu Met Asp Glu Asn Leu Glu Gln Val Ser
Gly Ile Ile Gly Asn Leu 145 150 155 160 Arg His Met Ala Leu Asp Met
Gly Asn Glu Ile Asp Thr Gln Asn Arg 165 170 175 Gln Ile Asp Arg Ile
Met Glu Lys Ala Asp Ser Asn Lys Thr Arg Ile 180 185 190 Asp Glu Ala
Asn Gln Arg Ala Thr Lys Met Leu Gly Ser Gly 195 200 205 8116PRTHomo
sapiens 8Met Ser Ala Thr Ala Ala Thr Ala Pro Pro Ala Ala Pro Ala
Gly Glu 1 5 10 15 Gly Gly Pro Pro Ala Pro Pro Pro Asn Leu Thr Ser
Asn Arg Arg Leu 20 25 30 Gln Gln Thr Gln Ala Gln Val Asp Glu Val
Val Asp Ile Met Arg Val 35 40 45 Asn Val Asp Lys Val Leu Glu Arg
Asp Gln Lys Leu Ser Glu Leu Asp 50 55 60 Asp Arg Ala Asp Ala Leu
Gln Ala Gly Ala Ser Gln Phe Glu Thr Ser 65 70 75 80 Ala Ala Lys Leu
Lys Arg Lys Tyr Trp Trp Lys Asn Leu Lys Met Met 85 90 95 Ile Ile
Leu Gly Val Ile Cys Ala Ile Ile Leu Ile Ile Ile Ile Val 100 105 110
Tyr Phe Ser Thr 115 966PRTHomo sapiens 9Ala Arg Glu Asn Glu Met Asp
Glu Asn Leu Glu Gln Val Ser Gly Ile 1 5 10 15 Ile Gly Asn Leu Arg
His Met Ala Leu Asp Met Gly Asn Glu Ile Asp 20 25 30 Thr Gln Asn
Arg Gln Ile Asp Arg Ile Met Glu Lys Ala Asp Ser Asn 35 40 45 Lys
Thr Arg Ile Asp Glu Ala Asn Gln Arg Ala Thr Lys Met Leu Gly 50 55
60 Ser Gly 65 1084PRTHomo sapiens 10Gln Gln Thr Gln Ala Gln Val Asp
Glu Val Val Asp Ile Met Arg Val 1 5 10 15 Asn Val Asp Lys Val Leu
Glu Arg Asp Gln Lys Leu Ser Glu Leu Asp 20 25 30 Asp Arg Ala Asp
Ala Leu Gln Ala Gly Ala Ser Gln Phe Glu Thr Ser 35 40 45 Ala Ala
Lys Leu Lys Arg Lys Tyr Trp Trp Lys Asn Leu Lys Met Met 50 55 60
Ile Ile Leu Gly Val Ile Cys Ala Ile Ile Leu Ile Ile Ile Ile Val 65
70 75 80 Tyr Phe Ser Thr 1138PRTHomo sapiens 11Lys Cys Cys Gly Leu
Phe Ile Cys Pro Cys Asn Lys Leu Lys Ser Ser 1 5 10 15 Asp Ala Tyr
Lys Lys Ala Trp Gly Asn Asn Gln Asp Gly Val Val Ala 20 25 30 Ser
Gln Pro Ala Arg Val 35
* * * * *