U.S. patent application number 14/695544 was filed with the patent office on 2015-08-13 for attenuated influenza vaccines and uses thereof.
The applicant listed for this patent is UNIVERSITY OF ROCHESTER. Invention is credited to Andrew Cox, Stephen Dewhurst, Baek Kim, John Treanor.
Application Number | 20150224187 14/695544 |
Document ID | / |
Family ID | 52346768 |
Filed Date | 2015-08-13 |
United States Patent
Application |
20150224187 |
Kind Code |
A1 |
Cox; Andrew ; et
al. |
August 13, 2015 |
ATTENUATED INFLUENZA VACCINES AND USES THEREOF
Abstract
Provided herein are attenuated influenza viruses and methods of
making attenuated influenza viruses.
Inventors: |
Cox; Andrew; (Rochester,
NY) ; Dewhurst; Stephen; (Rochester, NY) ;
Treanor; John; (Pittsford, NY) ; Kim; Baek;
(Atlanta, GA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
UNIVERSITY OF ROCHESTER |
Rochester |
NY |
US |
|
|
Family ID: |
52346768 |
Appl. No.: |
14/695544 |
Filed: |
April 24, 2015 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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PCT/US2014/047275 |
Jul 18, 2014 |
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14695544 |
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61856442 |
Jul 19, 2013 |
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Current U.S.
Class: |
424/209.1 ;
435/235.1; 435/236; 435/320.1; 435/70.3; 536/23.2 |
Current CPC
Class: |
C12N 9/127 20130101;
C12N 2760/16171 20130101; C12N 2760/16134 20130101; C12N 7/04
20130101; C12N 2760/16151 20130101; C12N 7/00 20130101; A61K
2039/5254 20130101; A61K 39/145 20130101; A61K 39/12 20130101; C12Y
207/07048 20130101; C12N 2760/00062 20130101; C12N 2760/00051
20130101; C12N 2760/16122 20130101 |
International
Class: |
A61K 39/145 20060101
A61K039/145; C12N 7/00 20060101 C12N007/00 |
Goverment Interests
STATEMENT REGARDING FEDERALLY FUNDED RESEARCH
[0002] This invention was made with government funding under
National Institutes of Health (NIH) Award No. HHSN2662007000008C,
NIH Award No. T32 GM068411 and NIH Award No. T32 GM07356. The
government has certain rights in this invention.
Claims
1. A modified influenza A virus comprising a PB1 polymerase having
one or more mutations in amino acids 310 to 325.
2. The virus of claim 1, wherein the PB1 polymerase comprises a
leucine to glutamine substitution at position 319 (L319Q).
3. The virus of claim 1, wherein the PB1 polymerase further
comprises one or more mutations selected from the group consisting
of a lysine to glutamic acid substitution at position 391 (K391E),
a glutamic acid to glycine substitution at position 581 (E581G) and
an alanine to threonine substitution at position 661 (A661T).
4. The virus of claim 1, wherein the virus further comprises a PB2
polymerase comprising an asparagine to serine substitution at
position 265 (N265S).
5. The virus of claim 1, wherein the virus further comprises an
influenza virus nucleoprotein (NP) comprising an aspartic acid to
glycine substitution at position 35 (D34G).
6. The virus of claim 1, wherein the influenza A virus is selected
from the group consisting of an H2N2 virus, an H3N2 virus, an H1N1
virus, an H9N2 virus and an H5N1 virus.
7. The virus of claim 1, wherein the influenza A virus is A/Ann
Arbor/6/60 (H2N2).
8. The virus of claim 1, wherein the virus is a live attenuated
influenza A virus with reduced growth from about 37.degree. C. to
about 39.degree. C., as compared to an influenza A virus comprising
a PB1 polymerase lacking one or more mutations in amino acids 310
to 325.
9. An immunogenic composition comprising the virus of claim 1 and a
pharmaceutically acceptable carrier.
10. A method for eliciting an immune response against an influenza
virus in a subject, comprising administering an effective dose of
the immunogenic composition of claim 9 to the subject.
11. A method of treating or reducing the risk of an influenza
infection in a subject, comprising administering to a subject with
an influenza infection or susceptible to an influenza infection an
effective dose of the immunogenic composition of claim 9.
12. A recombinant nucleic acid encoding a PB1 polymerase of an
influenza A virus, wherein the nucleic acid encodes a PB1
polymerase having one or more mutations in amino acids 310 to
325.
13. The nucleic acid of claim 12, wherein the nucleic acid encodes
a PB1 polymerase comprising a leucine to glutamine substitution at
position 319 (L319Q).
14. The nucleic acid of claim 12, wherein the nucleic acid encodes
a PB1 polymerase comprising a leucine to glutamine substitution at
position 319 (L319Q) and one or mutations selected from the group
consisting of a lysine to glutamic acid substitution at position
391 (K391E), a glutamic acid to glycine substitution at position
581 (E581G) and an alanine to threonine substitution at position
661 (A661T).
15. A vector comprising the nucleic acid of claim 12.
16. A method of producing the influenza virus of claim 1,
comprising: (a) transfecting a population of host cells with one or
more vectors comprising (i) nucleic acid sequences encoding the
internal genome segments of an influenza A virus and; (ii) a
nucleic acid encoding a PB1 polymerase with one or more mutations
in amino acids 310 to 325; (b) culturing the host cells; and (c)
recovering the modified influenza A virus.
17. The method of claim 16, wherein the nucleic acid encoding the
PB1 polymerase encodes a PB1 polymerase comprising a leucine to
glutamine substitution at position 319 (L319Q).
18. The method of claim 16, wherein the nucleic acid encoding the
PB1 polymerase encodes a PB1 polymerase comprising L319Q and one or
mutations selected from the group consisting of a lysine to
glutamic acid substitution at position 391 (K391E), a glutamic acid
to glycine substitution at position 581 (E581G) and an alanine to
threonine substitution at position 661 (A661T).
19. The method of claim 16, wherein the one or more vectors further
comprise a nucleic acid encoding a PB2 polymerase comprising a
N265S mutation.
20. The method of claim 16, wherein the one or more vectors
comprise a nucleic acid encoding an NP protein comprising a D34G
mutation.
21. The method of claim 16, wherein the influenza A virus is
selected from the group consisting of an H2N2 virus, an H3N2 virus,
an H1N1 virus, an H9N2 virus and an H5N1 virus.
22. The method of claim 16, wherein the cells are Vero cells, MDCK
cells or CEK cells.
23. A method for producing an influenza immunogen comprising: (a)
infecting a population of cells with the virus of claim 1; (b)
culturing the cells; (c) harvesting the virus from the culture of
step b); and (d) preparing an immunogen with the harvested
virus.
24. The method of claim 23, wherein the cells are mammalian cells
or avian cells.
25. A population of cells comprising the virus of claim 1.
26. A modified influenza A virus comprising a PB1 polymerase with
one or more mutations in amino acids 310 to 325, wherein at least
one of the mutations is selected from the group consisting of a
leucine to glutamic acid, aspartic acid or asparagine substitution
at position 319 (L319E/D/N) and a substitution at position 323.
27. The virus of claim 26, wherein the PB1 polymerase comprises a
leucine to glutamic acid substitution at position 319 (L319E).
28. The virus of claim 26, wherein the PB1 polymerase comprises a
leucine to asparagine substitution at position 319 (L319N).
29. The virus of claim 26, wherein the PB1 polymerase comprises a
threonine to glutamic acid, aspartic acid, glutamine, asparagine or
alanine substitution at position 323.
30. The virus of claim 26, wherein the PB1 polymerase further
comprises one or more mutations selected from the group consisting
of a lysine to glutamic acid substitution at position 391 (K391E),
a glutamic acid to glycine substitution at position 581 (E581G) and
an alanine to threonine substitution at position 661 (A661T).
31. The virus of claim 26, wherein the virus further comprises a
PB2 polymerase comprising an asparagine to serine substitution at
position 265 (N265S).
32. The virus of claim 26, wherein the virus further comprises an
influenza virus nucleoprotein (NP) comprising an aspartic acid to
glycine substitution at position 34 (D34G).
33. The virus of claim 26, wherein the influenza A virus is
selected from the group consisting of an H2N2 virus, an H3N2 virus,
an H1N1 virus, an H9N2 virus and an H5N1 virus.
34. The virus of claim 26, wherein the influenza A virus is A/Ann
Arbor/6/60 (H2N2) or (A/Puerto Rico/8/34/H1 N1)(PR8).
35. The virus of claim 26, wherein the virus is a live attenuated
influenza A virus with reduced growth from about 37.degree. C. to
about 39.degree. C., as compared to an influenza A virus comprising
a PB1 polymerase lacking one or more mutations in amino acids 310
to 325.
36. An immunogenic composition comprising the virus of claim 26 and
a pharmaceutically acceptable carrier.
37. A method for eliciting an immune response against an influenza
virus in a subject, comprising administering an effective dose of
the immunogenic composition of claim 36 to the subject.
38. A method of treating or reducing the risk of an influenza
infection in a subject, comprising administering to a subject with
an influenza infection or at risk of exposure to an influenza
infection an effective dose of the immunogenic composition of claim
36.
39. A recombinant nucleic acid encoding a PB1 polymerase of an
influenza A virus, wherein the nucleic acid encodes a PB1
polymerase having one or more mutations in amino acids 310 to 325
and wherein at least one of the mutations is selected from the
group consisting of a leucine to glutamic acid, aspartic acid or
asparagine substitution at position 319 (L319E/D/N), and a
substitution at position 323.
40. The recombinant nucleic acid of claim 39, wherein the PB1
polymerase comprises a L319E mutation.
41. The recombinant nucleic acid of claim 39, wherein the PB1
polymerase comprises a L319N mutation.
42. The nucleic acid of claim 39, wherein the nucleic acid encodes
a PB1 polymerase having one or more mutations selected from the
group consisting of a leucine to glutamic acid, aspartic acid or
asparagine substitution at position 319 (L319E/D/N) and a
substitution at position 323; and one or mutations selected from
the group consisting of a lysine to glutamic acid substitution at
position 391 (K391E), a glutamic acid to glycine substitution at
position 581 (E581G) and an alanine to threonine substitution at
position 661 (A661T).
43. A vector comprising the nucleic acid of claim 39.
44. A method of producing the influenza virus of claim 26,
comprising: (a) transfecting a population of host cells with one or
more vectors comprising (i) nucleic acid sequences encoding the
internal genome segments of an influenza A virus and; (ii) a
nucleic acid encoding a PB1 polymerase of an influenza A virus
having one or more mutations in amino acids 310 to 325, wherein at
least one of the mutations is selected from the group consisting of
a leucine to glutamic acid, aspartic acid or asparagine
substitution at position 319 (L319E/D/N) and a substitution at
position 323; (b) culturing the host cells; and (c) recovering the
influenza A virus.
45. The method of claim 44, wherein the nucleic acid encodes a PB1
polymerase having one or more mutations selected from the group
consisting of a leucine to glutamic acid, aspartic acid or
asparagine substitution at position 319 (L319E/D/N), a substitution
at position 323 and one or mutations selected from the group
consisting of a lysine to glutamic acid substitution at position
391 (K391E), a glutamic acid to glycine substitution at position
581 (E581G) and an alanine to threonine substitution at position
661 (A661T).
46. The method of claim 44, wherein the one or more vectors further
comprise a nucleic acid encoding a PB2 polymerase comprising a
N265S mutation.
47. The method of claim 44, wherein the one or more vectors further
comprise a nucleic acid encoding an NP protein comprising a D34G
mutation.
48. The method of claim 44, wherein the influenza A virus is
selected from the group consisting of an H2N2 virus, an H3N2 virus,
an H1N1 virus, an H9N2 virus and an H5N1 virus.
49. The method of claim 44, wherein the cells are Vero cells, MDCK
cells or CEK cells.
50. A method for producing an influenza immunogen comprising: (a)
infecting a population of cells with the virus of claim 26; (b)
culturing the cells; (c) harvesting the virus from the culture of
step b); and (d) preparing an immunogen with the harvested
virus.
51. The method of claim 51, wherein the cells are mammalian cells
or avian cells.
52. A population of cells comprising the virus of claim 26.
Description
[0001] This application is a continuation-in-part of International
Application No. PCT/US2014/047275, filed Jul. 18, 2014, which
claims the benefit of U.S. Provisional Application No. 61/856,442,
filed Jul. 19, 2013, the disclosures of which are both incorporated
herein by reference in their entireties.
BACKGROUND
[0003] Influenza is a serious public health issue marked by mild to
serious illness and, in some cases, even death. Current live
attenuated influenza vaccines (LAIV) are not sufficiently
attenuated for administration to children under the age of 2,
pregnant women, persons with compromised immunity, or persons at
high risk for complications from influenza. However, these groups
of people are at high risk for complications from influenza.
SUMMARY
[0004] Provided herein is a modified influenza A virus comprising a
PB1 polymerase having one or more mutations in amino acids 310 to
325. Further provided is a recombinant nucleic acid encoding a PB1
polymerase of an influenza A virus, wherein the nucleic acid
encodes a PB1 polymerase having one or more mutations in amino
acids 310 to 325.
[0005] Also provided is a modified influenza A virus comprising a
PB1 polymerase having one or more mutations in amino acids 310 to
325, wherein at least one of the mutations is selected from the
group consisting of a leucine to glutamic acid, aspartic acid or
asparagine substitution at position 319 (L319E/D/N) and a
substitution at position 323. Further provided is a recombinant
nucleic acid encoding a PB1 polymerase having one or more mutations
in amino acids 310 to 325, wherein at least one of the mutations is
selected from the group consisting of a leucine to glutamic acid,
aspartic acid or asparagine substitution at position 319
(L319E/D/N) and a substitution at position 323.
[0006] Also provided are populations of cells comprising any of the
modified influenza A viruses described herein or comprising any of
the nucleic acids that encodes the PB1 polymerases described
herein. The polymerase mutation(s) results in a temperature
sensitive virus, wherein the virus has reduced growth from about
37.degree. C. to about 39.degree. C. (i.e., at body temperature).
This reduced growth potential is advantageous for improving the
safety of the virus when used to induce an immune response.
[0007] Further provided is a method for eliciting an immune
response against an influenza virus in a subject, comprising
administering an effective dose of a modified influenza A virus
described herein in a pharmaceutically acceptable carrier.
[0008] Also provided is a method for treating or reducing the risk
of influenza infection in a subject, comprising administering to a
subject with an influenza infection or at risk of exposure to an
influenza infection an effective dose of a modified influenza A
virus described herein, and a pharmaceutically acceptable
carrier.
[0009] Also provided is a method of producing an influenza A virus
described herein by transfecting a population of host cells with
one or more vectors. The vectors comprise i) nucleic acid sequences
encoding the internal genome segments of an influenza A virus and
ii) a nucleic acid encoding a PB1 polymerase having one or more
mutations in amino acids 310 to 325. The transfected cells are
cultured and the modified influenza A virus is recovered.
[0010] Further provided is a method of producing an influenza A
virus described herein by transfecting a population of host cells
with one or more vectors comprising i) nucleic acid sequences
encoding the internal genome segments of an influenza A virus and
ii) a nucleic acid encoding a PB1 polymerase having one or more
mutations in amino acids 310 to 325, wherein at least one of the
mutations is selected from the group consisting of a leucine to
glutamic acid, aspartic acid or asparagine substitution at position
319 (L319E/D/N) and a substitution at position 323. The transfected
cells are cultured and the modified influenza A virus is
recovered.
[0011] Further provided is a method for producing an influenza
immunogen comprising infecting a population of cells with any of
the influenza A viruses described herein; culturing the cells;
harvesting the virus from the culture; and preparing an immunogen
with the harvested virus.
DESCRIPTION OF THE DRAWINGS
[0012] FIG. 1 shows the identification of a PB2 single gene
replacement virus with temperature sensitivity at 37.degree. C.
MDCK cells were infected at a Multiplicity of Infection (MOI) of
0.01 for 1 h with a single gene replacement virus with PB2 from the
cold passaged A/AnnArbor/6/60, and all other genes from a seasonal
strain A/Korea/82. Cells were washed once with Dulbecco's
phosphate-buffered saline (PBS) with magnesium and calcium
(Invitrogen), and then cultured at 34.degree., 37.degree. or
39.degree. C. in DMEM containing 0.15% bovine serum albumin (BSA)
and tosylsulfonylphenylalanyl chloromethyl ketone (TPCK)-trypsin at
1 .mu.g/ml. At the indicated time points, 10% of the culture
supernatant was harvested and replaced, and viral titers were
determined through TCID-50 measurements.
[0013] FIG. 2 shows that the PB1 319Q mutation significantly
reduces functional activity of the human influenza A virus RNA
polymerase at 37.degree. C. The polymerase activity of the
indicated polymerases was characterized in human HEK-293FT cells by
quantifying luciferase activity in the clarified cell lysates of
cells transfected with PB1-, PB2-, PA-, and NP-protein expression
plasmids along with a reporter plasmid expressing an influenza
virus-like RNA construct for firefly luciferase. The cells were
incubated at the indicated temperatures. All assays utilized the
same NP plasmid. Depicted is the ratio of firefly to renilla
luminescence. Data are averaged over a minimum of three independent
experiments. Error bars represent one standard error of the mean.
All plasmids used in this mini-genome assay were identical, except
for the PB1 plasmid, which encoded a Q at residue 319 (as
indicated). These plasmids were created from viral stocks through
cloning the consensus sequence from viral growth curves into the
mammalian pCAGGS expression vector.
[0014] FIG. 3 shows that the PB1 L319Q mutation reduces functional
activity of an avian influenza A virus RNA polymerase at 37.degree.
C. The polymerase activity of each viral polymerase was
characterized in human HEK-293FT cells by quantifying luciferase
activity in the clarified cell lysates of cells transfected with
PB1-, PB2-, PA-, and NP-protein expression plasmids along with a
reporter plasmid expressing an influenza virus-like RNA construct
for firefly luciferase. The cells were incubated at the indicated
temperatures. Depicted is the ratio of firefly to renilla
luminescence. Data are averaged over a minimum of 3 independent
experiments. Error bars represent one standard error of the mean.
In this experiment, all polymerase gene segments were derived from
avian influenza viruses. The PA and PB2 segments were derived from
A/California/04/09 H1N1, and the PB1 and NP segments were derived
from A/Chicken/Nanchang/3 H3N2. Plasmids differed only at the
indicated residues: (1) PB2 encoding either 265S or 265N
[wild-type]; (2) encoding either 319Q or 319L [wild-type].
[0015] FIG. 4 shows the effects of a 319Q mutation in PB1, in
combination with three mutations present in LAIV PB1.
[0016] FIG. 5 shows the effects of a 319Q mutation in PB1, in
combination with four mutations present in LAIV PB1.
[0017] FIG. 6 shows the stability of the mutation at position 319
of PB1.
[0018] FIG. 7 shows the effect of a 319Q mutation in PB1 on
temperature sensitive viral growth in MDCK (vaccine production) and
A549 (human lung carcinoma) cells.
[0019] FIG. 8 shows the effect of a 319Q mutation in PB1 on
pathogenicity in mice alone and in combination with the mutations
of LAIV (N265S in PB2, K391E, E581G and A661T in PB1).
[0020] FIG. 9 shows the immunogenicity of live attenuated influenza
virus (LAIV) comprising a 319Q mutation in PB1. This figure shows
that replication is necessary for immunogenicity as UV inactivation
renders the virus non-immunogenic.
[0021] FIG. 10 shows the protective efficacy of a live attenuated
influenza virus (LAIV) comprising a 319Q mutation in PB1 against
homologous and heterologous lethal challenge. LAIV 319Q is
protective against both homologous (matched) and heterologous
(mismatched) strains of influenza. All mice that seroconverted were
protected from challenge with homologous virus and all mice that
seroconverted for the matched strain were also protected against
the mismatched strain. Additionally, cohorts of mice that did not
seroconvert were also protected suggesting T-cell mediated vaccine
responses.
[0022] FIG. 11 shows that a L319E mutation at PB1 results in a PB1
polymerase with a 20-fold decrease in activity at 37.degree. C. as
compared to activity at 33.degree. C. FIG. 11 also shows that a
L319N mutation at PB1 results in a PB1 polymerase with a 5-fold
decrease in activity at 37.degree. C. as compared to activity at
33.degree. C.
[0023] FIG. 12 shows that an influenza virus with a L319Q mutation
in PB1 synergizes with a N265S mutation in PB2 and results in
increased safety.
[0024] FIG. 13 shows that an influenza virus with a L319E mutation
in PB1 synergizes with a N265S mutation in PB2 and results in a
300-fold increase in safety as compared to a PB1 polymerase
comprising a L319Q mutation.
[0025] FIG. 14 shows that an influenza virus with a L319E mutation
in PB1 synergizes with a N265S mutation in PB2 in A549 cells.
[0026] FIG. 15 shows that a live attenuated influenza virus with a
PB1 polymerase comprising a L319N mutation has increased activity
at 33.degree. C. as compared to a live attenuated influenza virus
with a PB1 polymerase comprising a L319Q mutation.
DETAILED DESCRIPTION
[0027] The current live attenuated influenza vaccine (LAIV) is
recommended as the primary vaccination strategy for healthy
subjects aged 2 to 49 years, because of its greater efficacy and
ease-of-use than the traditional inactivated influenza vaccine in
this age group. However, the current LAIV is not recommended for
pregnant women, children under 2, persons with a compromised immune
system, (for example, persons with HIV/AIDS), or persons at high
risk for complications from influenza. Provided herein are
modified, temperature sensitive influenza A viruses that have
reduced growth potential. The reduced growth potential is
advantageous for improving the safety of the virus when used to
induce an immune response in a mammal.
[0028] Provided herein is a modified influenza A virus comprising a
PB1 polymerase having one or more mutations in amino acids 310 to
325. Amino acids 310 to 325 of a PB1 polymerase are set forth
herein as NENQNPRMFLAMITYI (SEQ ID NO: 1).
[0029] As used throughout, any influenza A virus can be modified to
comprise a PB1 polymerase having one or more mutations in amino
acids 310 to 325. For example, the influenza A virus can be
selected from the group consisting of an H2N2 virus, an H3N2 virus,
an H1N1 virus, an H9N2 virus and an H5N1 virus. Optionally, the
influenza A virus can be selected from the group consisting of
A/Ann Arbor/6/60, A/California/04/2009, A/Wisconsin/22/2011 and
A/Quail/Hong Kong/G1/97. The influenza A virus can also be an avian
influenza A virus. These include, but are not limited to,
A/Chicken/Nanchang/3-120/01 H3N2, A/Hong Kong/485/1997(H5N1),
A/Anhui/1/2013 (H7N9) and A/Shanghai/1/2013 (H7N9)
[0030] Resassortant influenza A viruses comprising one or more
genomic segments from one or more influenza A viruses are also
contemplated. More specifically, the virus includes genetic and/or
polypeptide components derived from more than one parental viral
strain or source. For example, a 7:1 reassortant includes 7 viral
genomic segments (or gene segments) derived from a first parental
virus and a single complementary viral genomic segment, e.g.,
encoding hemagglutinin or neuraminidase, from a second parental
virus. A 6:2 reassortant includes 6 genomic segments, most commonly
the 6 internal genes from a first parental virus, and two
complementary segments, e.g., hemagglutinin (HA) and neuraminidase
(NA), from a different parental virus. Optionally, reassortant
viruses are produced by introducing vectors including the six
internal genes of a viral strain selected for its favorable
properties regarding vaccine production, in combination with the
genome segments encoding the surface antigens (HA and NA) of a
selected, (e.g., pathogenic) strain. For example, the HA segment
can be selected from an H1, H3 or B strain, as is routinely
performed for vaccine production. Similarly, the HA segment can be
selected from other pathogenic strains such as an H2 strain (e.g.,
H2N2), an H5 strain (e.g., H5N1), an H7 strain (e.g., H7N7) or an
H9 strain (H9N2). In certain modified viruses, the internal gene
segments are derived from the influenza A/Ann Arbor/6/60
strain.
[0031] As set forth herein, modifications include, but are not
limited to, mutations in the amino acid sequence of a PB1
polymerase. The one or more mutations in the PB1 polymerase can be
non-naturally occurring and are produced by human intervention
(e.g., by mutagenesis of cloned DNA sequences), such as induced
point mutation, deletion, insertion and substitution mutants. Amino
acid sequence mutations typically fall into one or more of three
classes: substitutional, insertional or deletional mutations.
Insertions include amino and/or carboxyl terminal fusions as well
as intrasequence insertions of single or multiple amino acid
residues. Insertions ordinarily will be smaller insertions than
those of amino or carboxyl terminal fusions, for example, on the
order of one to four residues. Deletions are characterized by the
removal of one or more amino acid residues from the protein
sequence. Typically, no more than from about 2 to about 6 residues
are deleted at any one site within the protein molecule. Amino acid
substitutions are typically of single residues but can occur at a
number of different locations at once, for example in one, two,
three, four, five, six, seven or more amino acids of the
polypeptide sequence set forth as SEQ ID NO: 1 or SEQ ID NO: 2, for
example; insertions usually will be on the order of about from 1 to
10 amino acid residues; and deletions will range from about 1 to 10
residues. Deletions or insertions preferably are made in adjacent
pairs, i.e., a deletion of 2 residues or insertion of 2 residues.
Substitutions, deletions, insertions or any combination thereof may
be combined to arrive at a final construct. The mutations must not
place the sequence out of reading frame and preferably will not
create complementary regions that could produce secondary mRNA
structure. Substitutional modifications are those in which at least
one residue has been removed and a different residue inserted in
its place. Such substitutions can be made in accordance with the
following Table 1 and are referred to as conservative
substitutions.
TABLE-US-00001 TABLE 1 Amino Acid Substitutions Amino Acid
Substitutions (others are known in the art) Ala Ser, Gly, Cys Arg
Lys, Gln, Met, Ile Asn Gln, His, Glu, Asp Asp Glu, Asn, Gln Cys
Ser, Met, Thr Gln Asn, Lys, Glu, Asp Glu Asp, Asn, Gln Gly Pro, Ala
His Asn, Gln Ile Leu, Val, Met Leu Ile, Val, Met Lys Arg, Gln, Met,
Ile Met Leu, Ile, Val Phe Met, Leu, Tyr, Trp, His Ser Thr, Met, Cys
Thr Ser, Met, Val Trp Tyr, Phe Tyr Trp, Phe, His Val Ile, Leu,
Met
[0032] Amino acid substitutions are not necessarily conservative as
amino acid substitutions that change the side chain length,
hydrophobicity or the polarity of a particular amino acid can also
be made in order to alter the temperature sensitivity and/or
increase the attenuation of virus.
[0033] In the PB1 polymerases described herein, one or more
mutations in amino acids 310 to 325 can be selected from the group
consisting of a leucine to glutamic acid, aspartic acid, glutamine
or asparagine substitution at position 319 (L319E/D/Q/N); an
asparagine to valine substitution at position 310 (N310V); an
asparagine to valine substitution at position 312 (N312V), a
glutamine to leucine substitution at position 313 (Q313L); an
asparagine to valine substitution at position 314 (N314V); a
phenylalanine to tyrosine substitution at position 318 (F318Y), a
leucine to glutamine substitution at position 3139 (L319Q); an
alanine to threonine substitution at position 320 (A320T); an
isoleucine to glutamine substitution at position 321 (I321 Q); a
threonine to glutamic acid, aspartic acid, glutamine, asparagine or
alanine substitution at position 323 (T323E/D/Q/N/A); a tyrosine to
phenylalanine substitution at position 324 (Y324F); and an
isoleucine to glutamine substitution at position 325 (I325Q).
[0034] For example, and not to be limiting, provided herein is a
modified influenza A virus comprising a PB1 polymerase having one
or more mutations in amino acids 310 to 325, wherein at least one
of the mutations is selected from the group consisting of a leucine
to glutamic acid, aspartic acid or asparagine substitution at
position 319 (L319E/D/N) and a substitution at position 323. Also
provided is a modified influenza A virus comprising a PB1
polymerase having a L319Q mutation and a mutation at position 323.
Optionally, the substitution at position 323 can be a threonine to
glutamic acid, aspartic acid, glutamine, asparagine or alanine
substitution.
[0035] It is understood that SEQ ID NO: 1 is an example of amino
acids 310 to 325 of a PB1 polymerase. A sequence of amino acids 310
to 325, or comparable residues thereof, of any PB1 polymerase that
is at least about 80%, 85%, 90%, or 95% identical to SEQ ID NO: 1
can also be modified as set forth herein. SEQ ID NO: 2 is an
example of a PB1 polymerase. The locations of the amino acids of
PB1 polymerase set forth herein are based on SEQ ID NO: 2. However,
it is understood that the corresponding positions in other PB1
polymerase sequences (for example SEQ ID NO: 3, SEQ ID NO: 4 or SEQ
ID NO: 5) can be modified as set forth herein. A PB1 polymerase
that is at least about 80%, 85%, 90%, or 95% identical to SEQ ID
NO: 2 can also be modified as set forth herein. Therefore, provided
herein are polypeptides comprising a PB1 polymerase wherein the
polypeptide is at least about 80%, 85%, 90%, or 95% identical to
SEQ ID NO: 2 and comprises one or more mutations in amino acids 310
to 325 of PB1.
[0036] Those of skill in the art readily understand how to
determine the identity of two polypeptides or nucleic acids. For
example, the identity can be calculated after aligning the two
sequences so that the identity is at its highest level. Another way
of calculating identity can be performed by published algorithms.
Optimal alignment of sequences for comparison can be conducted
using the algorithm of Smith and Waterman Adv. Appl. Math. 2: 482
(1981), by the alignment algorithm of Needleman and Wunsch, J. Mol.
Biol. 48: 443 (1970), by the search for similarity method of
Pearson and Lipman, Proc. Natl. Acad. Sci. U.S.A. 85: 2444 (1988),
by computerized implementations of these algorithms (GAP, BESTFIT,
FASTA, and TFASTA in the Wisconsin Genetics Software Package,
Genetics Computer Group, 575 Science Dr., Madison, Wis.; the BLAST
algorithm of Tatusova and Madden FEMS Microbiol. Lett. 174: 247-250
(1999) available from the National Center for Biotechnology
Information (http://www.ncbi.nlm.nih.gov/blast/bl2seq/bl2.html), or
by inspection.
[0037] The PB1 polymerases of any modified influenza A virus
described herein can optionally comprise one or more mutations
selected from the group consisting of a lysine to glutamic acid
substitution at position 391 (K391E), a glutamic acid to glycine
substitution at position 581 (E581G) and an alanine to threonine
substitution at position 661 (A661T).
[0038] Any of the influenza A viruses described herein, including
those with one or more mutations in a PB1 polymerase, as described
above, can further comprise a PB2 polymerase comprising an
asparagine to serine substitution at position 265 (N2655). Further,
any of the influenza A viruses described can further comprise an
influenza virus nucleoprotein (NP) comprising an aspartic acid to
glycine substitution at position 35 (D34G). For example, the
modified influenza A virus can be a modified influenza A comprising
a PB1 polymerase having a L319Q mutation. In another example, the
modified influenza A virus can be a modified influenza comprising a
PB1 polymerase having a L319Q mutation and a PB2 polymerase having
a N265S mutation. In another example, the modified influenza A
virus can be a modified influenza comprising a PB1 polymerase
having a L319Q, a K391E, a E581G and a A661T mutation. In another
example, the modified influenza A virus can be a modified influenza
comprising a PB1 polymerase having a L319Q, a K391E, a E581G and a
A661T mutation; and a PB2 polymerase having a N265S mutation.
[0039] Modifications, including the specific amino acid
substitutions disclosed herein, are made by known methods. By way
of example, modifications are made by site specific mutagenesis of
nucleotides in the DNA encoding the polypeptide, thereby producing
DNA encoding the modification, and thereafter expressing the DNA in
recombinant cell culture. Techniques for making substitution
mutations at predetermined sites in DNA having a known sequence are
well known, for example M13 primer mutagenesis and PCR
mutagenesis.
[0040] As used throughout, the PB1 polymerase can be any influenza
A PB1 polymerase, including but not limited to, a A/Ann Arbor/6/60
H2N2 PB1 polymerase (GenBank Accession No. AY210012.1) (SEQ ID NO:
2), a A/California/04/2009 H1N1 PB1 polymerase (GenBank Accession
No. GQ377049.1) (SEQ ID NO: 3), an H3N2 A/Wisconsin/22/2011 PB1
polymerase (GenBank Accession No. KC883051.1) (SEQ ID NO: 4) and a
A/Quail/Hong Kong/G1/97 H9N2 and H5N1 PB1 polymerase (GenBank
Accession No. AF156421.1) (SEQ ID NO: 5). Optionally, the nucleic
acid sequence set forth under GenBank Accession No. AY210012.1 (SEQ
ID NO: 6), also known as a nucleic acid sequence that encodes the
Master Donor Virus (MDV) PB1 can comprise one or more mutations
selected from the group consisting of A99G, A1171G, G1371T, A1742G,
G1981A, and C1995T. Optionally, the PB1 nucleic acid sequence from
A/Ann Arbor/6/60 comprises A99G, A1171G, G1371T, A1742G, G1981A,
and C1995T.
[0041] As used throughout, the PB2 polymerase can be any influenza
A PB2 polymerase, including but not limited to A/Ann Arbor/6/60
H2N2 PB2 polymerase (GenBank Accession No. AY209938) (SEQ ID NO:
7), A/Quail/Hong Kong/G1/97 H2N2 PB2 polymerase (GenBank Accession
No. AF156435) (SEQ ID NO: 8), A/Shanghai/02/2013 H7N9 PB2
polymerase (Gen Bank Accession No. KF021594) (SEQ ID NO:9) or
A/Chicken/Nanchang/3-120/2001 H3N2 PB2 polymerase (Gen Bank
Accession No. AY180761) (SEQ ID NO: 10).
[0042] Recombinant nucleic acids encoding a PB1 polymerase of an
influenza A virus, wherein the nucleic acid encodes a PB1
polymerase having one or more mutations in amino acids 310 to 325,
are also provided. For example, a nucleic acid encoding a PB1
polymerase comprising a leucine to glutamine substitution at
position 319 (L319Q) is provided herein. Also provided is a nucleic
acid encoding a PB1 polymerase comprising a leucine to glutamic
acid substitution at position 319 (L319E) and a nucleic acid
encoding a PB1 polymerase comprising a leucine to asparagine
substitution at position 319 (L319N). Further provided is a nucleic
acid encoding a PB1 polymerase comprising a leucine to glutamic
acid, aspartic acid, glutamine or asparagine substitution at
position 319 (L319E/D/Q/N) and one or mutations selected from the
group consisting of a lysine to glutamic acid substitution at
position 391 (K391E), a glutamic acid to glycine substitution at
position 581 (E581G) and an alanine to threonine substitution at
position 661 (A661T). Further provided are nucleic acids that
encode both PB1 and PB2 polymerases with one or more mutations and
compositions comprising nucleic acids that encode PB1 and PB2
polymerases with one or more mutations.
[0043] As used throughout, the term recombinant means that the
material (e.g., a nucleic acid or protein) has been artificially or
synthetically (i.e., non-naturally) altered by human intervention.
It is understood that, when referring to a virus, e.g., an
influenza A virus, the virus is recombinant when it is produced by
the expression of a recombinant nucleic acid.
[0044] As used herein, nucleic acid refers to single or multiple
stranded molecules which can be DNA or RNA, or any combination
thereof, including modifications to those nucleic acids. For
example, the nucleic acid can be a cDNA. The nucleic acid may
represent a coding strand or its complement, or any combination
thereof. The nucleic acid can be directly cloned into an
appropriate vector or, if desired, can be modified to facilitate
the subsequent cloning steps. Such modification steps are routine,
an example of which is the addition of oligonucleotide linkers
which contain restriction sites to the termini of the nucleic acid.
General methods are set forth in in Sambrook et al. (2012)
Molecular Cloning--A Laboratory Manual (4th ed.) Vol. 1-3, Cold
Spring Harbor Laboratory, Cold Spring Harbor Press, NY,
(Sambrook).
[0045] The nucleic acids disclosed herein can be in any vector that
can be used for the production of influenza virus in a host cell.
The vector can direct the in vivo or in vitro synthesis of any of
the polypeptides described herein, including, but not limited to
PB1 and/or PB2 polymerases. One or more of the vectors described
herein can be part of a multi-vector system used to produce an
influenza A virus. The vector is contemplated to have the necessary
functional elements that direct and regulate transcription of the
inserted nucleic acid. These functional elements include, but are
not limited to, a promoter; regions upstream or downstream of the
promoter, such as enhancers that may regulate the transcriptional
activity of the promoter; an origin of replication; appropriate
restriction sites to facilitate cloning of inserts adjacent to the
promoter; antibiotic resistance genes or other markers which can
serve to select for cells containing the vector or the vector
containing the insert; RNA splice junctions; a transcription
termination region; or any other region that may serve to
facilitate the expression of the inserted gene or hybrid gene (See
generally, Sambrook et al. (2012)). The vector, for example, can be
a plasmid. The vectors can contain genes conferring hygromycin
resistance, ampicillin resistance, gentamicin resistance, neomycin
resistance or other genes or phenotypes suitable for use as
selectable markers.
[0046] As used throughout, a host cell is a cell that contains one
or more of the nucleic acids disclosed herein, including any of the
nucleic acids in a vector, and supports the replication and/or
expression of the nucleic acids and optionally production of one or
more encoded products including a polypeptide and/or a virus. Host
cells can be prokaryotic cells, such as E. coli, or eukaryotic
cells, such as yeast, insect, amphibian, avian or mammalian cells,
including human cells. Examples of host cells include, but are not
limited to, Vero (African green monkey kidney) cells, Per.C6 cells
(human embryonic retinal cells), BHK (baby hamster kidney) cells,
primary chick kidney (PCK) cells, Madin-Darby Canine Kidney (MDCK)
cells, Madin-Darby Bovine Kidney (MDBK) cells, 293 cells (e.g.,
293T cells), CEK cells, primary human lung cells, bronchial
epithelial cells, COS cells (e.g., COS1, COST cells) and any other
mammalian or avian cells that can be used to produce or propagate
an influenza virus. The term host cell encompasses combinations or
mixtures of cells including, but not limited to mixed cultures of
different cell types or cell lines.
[0047] Any of the modified influenza A viruses described herein can
be a live attenuated influenza A virus with reduced growth from
about 37.degree. C. to about 39.degree. C., as compared to a
wildtype influenza A virus or an influenza A virus comprising a PB1
polymerase lacking one or more mutations in amino acids 310 to 325.
Optionally, the modified influenza A virus is a live attenuated
influenza A virus with reduced growth from about 37.degree. C. to
about 39.degree. C. as compared to PR8 LAIV or any other LAIV that
does not comprise at least one mutation in amino acids 310 to 325
or comparable residues thereof. Optionally, the modified influenza
A virus is a live attenuated influenza A virus with reduced growth
from about 37.degree. C. to about 39.degree. C. as compared to a
live attenuated virus comprising SEQ ID NO: 2, 3, 4 or 5.
[0048] For example, the modified influenza A virus can have reduced
growth at about 37.degree. C., 38.degree. C. or 39.degree. C. or
any temperature in between. Further, the modified influenza A virus
can have reduced growth at about 37.degree. C.-38.degree. C. or at
about 38.degree. C.-39.degree. C. Optionally, the modified
influenza A virus grows at temperatures between about 32.degree.
C.-34.degree. C. and has a reduction in growth at temperatures
greater than about 34.degree. C. In this way, the modified
influenza A virus can grow, for example, in the upper respiratory
tract where temperatures are about 32.degree. C.-34.degree. C., and
stimulate an immune reaction, without producing symptoms in the
lower respiratory tract where temperatures are about 37.degree.
C.-38.degree. C. Optionally, the modified influenza A virus is
attenuated at temperatures between about 32.degree. C.-34.degree.
C. as well as between temperatures of about 37.degree. C. to about
39.degree. C. The degree of attenuation does not have to be the
same at temperatures between about 32.degree. C.-34.degree. C. and
at temperatures between about 37.degree. C. to about 39.degree. C.,
as the reduction in growth at 32.degree. C.-34.degree. C. can be
about the same or less than the reduction in growth at about
37.degree. C. to about 39.degree. C. Optionally, the virus exhibits
at least about a 100-fold or greater reduction in titer at about
39.degree. C. relative to titer at about 34.degree. C.
[0049] As used throughout, ranges can be expressed herein as from
about one particular value, and/or to about another particular
value. When such a range is expressed, another aspect includes from
the one particular value and/or to the other particular value.
Similarly, when values are expressed as approximations, by use of
the antecedent "about" it will be understood that the particular
value forms another aspect. It will be further understood that the
endpoints of each of the ranges are significant both in relation to
the other endpoint, and independently of the other endpoint. It is
also understood that there are a number of values disclosed herein,
and that each value is also herein disclosed as about that
particular value in addition to the value itself. For example, if
the value 10 is disclosed, then "about 10" is also disclosed. It is
also understood that throughout the application data are provided
in a number of different formats and that this data represent
endpoints and starting points and ranges for any combination of the
data points. For example, if a particular data point "10" and a
particular data point "15" are disclosed, it is understood that
greater than, greater than or equal to, less than, less than or
equal to, and equal to 10 and 15 are considered disclosed as well
as any value between 10 and 15. It is also understood that each
unit between two particular units are also disclosed. For example,
if 10 and 15 are disclosed, then 11, 12, 13, and 14 are also
disclosed.
[0050] A reduction or a decrease in growth can be a decrease of
about 10, 20, 30, 40, 50, 60, 70, 80, 90, 100% or any percentage in
between as compared to an influenza A virus comprising a PB1
polymerase lacking one or more mutations in amino acids 310 to 325.
Growth indicates viral quantity as indicated by titer, plaque size
or morphology, particle density or other measures known to those of
skill in the art. A reduction or decrease in growth can also be a
reduction or decrease in replication of about 10, 20, 30, 40, 50,
60, 70, 80, 90, 100% or any percentage in between as compared to an
influenza A virus comprising a PB1 polymerase lacking one or more
mutations in amino acids 310 to 325.
[0051] Further provided is an immunogenic composition comprising
any of the modified influenza A viruses disclosed herein and a
pharmaceutically acceptable carrier to stimulate an immune response
against one or more strains of influenza virus. By pharmaceutically
acceptable carrier is meant a material that is not biologically or
otherwise undesirable, i.e., the material is administered to a
subject without causing undesirable biological effects or
interacting in a deleterious manner with the other components of
the pharmaceutical composition in which it is contained. The
carrier is selected to minimize degradation of the active
ingredient and to minimize adverse side effects in the subject. One
of skill in the art would know how to select a carrier in order to
minimize allergic and other undesirable effects and to suit the
particular route of administration. Optionally, the composition can
further comprise an adjuvant. Adjuvants are known to those of skill
in the art and include, for example, aluminum salts, oil-in water
adjuvants (for example, MF59 or AS03), CpG adjuvants and
lipids.
[0052] Suitable carriers and their formulations are described in
Remington: The Science and Practice of Pharmacy, 22nd edition, Loyd
V. Allen et al, editors, Pharmaceutical Press (2012). Examples of
pharmaceutically acceptable carriers include, but are not limited
to, sterile water, saline, buffered solutions like Ringer's
solution, glycerol solutions, ethanol, dextrose solutions,
allantoic fluid from uninfected chicken eggs (i.e., normal
allantoic fluid) or combinations thereof. The pH of the solution is
generally about 5 to about 8 or from about 7 to 7.5. The
preparation of such solutions insuring sterility, pH, isotonicity,
and stability is effected according to protocols established in the
art.
[0053] Other carriers include sustained release preparations such
as semipermeable matrices of solid hydrophobic polymers containing
the immunogenic composition. Matrices are in the form of shaped
articles, e.g., films, liposomes, or microparticles. Certain
carriers may be more preferable depending upon, for instance, the
route of administration and concentration of composition being
administered. Carriers are those suitable for administration of the
compositions disclosed herein, to humans or other subjects.
[0054] Also provided is a method for eliciting an immune response
against an influenza virus in a subject comprising administering an
effective dose or does of any of the immunogenic compositions
described herein. In the methods disclosed herein, the immune
response can be an innate and/or an adaptive immune response. An
immune response can be an antibody response against one or more
strains of influenza and/or a T cell mediated response.
[0055] As used throughout, a subject can be a vertebrate, more
specifically a mammal (e.g., a human, horse, cat, dog, cow, pig,
sheep, goat, mouse, rabbit, rat, and guinea pig), birds, reptiles,
amphibians, fish, and any other animal. The term does not denote a
particular age or sex. Thus, adult and newborn subjects, whether
male or female, are intended to be covered. As used herein, patient
or subject may be used interchangeably and can refer to a subject
with or at risk of developing an influenza infection. The term
patient or subject includes human and veterinary subjects.
[0056] According to the methods taught herein, the subject is
administered an effective amount of the agent, e.g., an immunogenic
composition comprising a modified influenza A virus. The terms
effective amount and effective dosage are used interchangeably. The
term effective amount is defined as any amount necessary to produce
a desired physiologic response (i.e., an immune response).
Effective amounts and schedules for administering the agent may be
determined empirically, and making such determinations is within
the skill in the art. The dosage ranges for administration are
those large enough to produce the desired effect (e.g., eliciting
an immune response to the antigen of interest, i.e. influenza A).
The dosage should not be so large as to cause substantial adverse
side effects, such as unwanted cross-reactions, anaphylactic
reactions, and the like. Generally, the dosage will vary with the
age, condition, sex, type of disease, the extent of the disease or
disorder, route of administration, or whether other drugs are
included in the regimen, and can be determined by one of skill in
the art. The dosage can be adjusted by the individual physician in
the event of any contraindications. Dosages can vary, and the agent
can be administered in one or more dose administrations daily, for
one or multiple days, including a prime and boost paradigm as
needed.
[0057] The compositions are administered via any of several routes
of administration, including, but not limited to, orally,
parenterally, intravenously, intramuscularly, subcutaneously,
transdermally, nebulization/inhalation, or by installation via
bronchoscopy. Optionally, the composition is administered by oral
inhalation, nasal inhalation, or intranasal mucosal administration.
Administration of the compositions by inhalant can be through the
nose or mouth via delivery by spraying or droplet mechanism, for
example, in the form of an aerosol. A form of administration that
results in an immune response can be used by one of skill in the
art to optimize the response.
[0058] In any of the methods described herein, the immunogenic
compositions can be used alone or in combination with one or more
therapeutic agents such as, for example, antiviral compounds for
the treatment of influenza. These include, but are not limited to,
amantadine, rimantadine, ribavirin, zanamavir (Relenza.RTM.) and
oseltamavir (Tamiflu.RTM.).
[0059] Further provided is a method of treating or preventing an
influenza infection in a subject, comprising administering to a
subject with an influenza infection or susceptible to an influenza
infection an effective dose of any of the immunogenic compositions
described herein.
[0060] For purposes of vaccines, the subject may be healthy and
without higher risk than the general public. A subject at risk of
developing an influenza infection, however, can be predisposed to
contracting an infection (e.g., persons over 65, persons with
asthma or other chronic respiratory disease, young children,
pregnant women, persons with a hereditary predisposition, persons
with a compromised immune system or by being in an environment that
facilitates the passage of an influenza infection). A subject
currently with an infection has one or more than one symptom of the
infection. These symptoms include, but are not limited, fever, sore
throat, cough, muscle aches, headache, fatigue, vomiting and
diarrhea. The subject currently with an influenza infection may
have been diagnosed with an influenza infection.
[0061] The methods and compositions as described herein are useful
for both prophylactic and therapeutic treatment. For prophylactic
use, a therapeutically effective amount of the compositions
described herein are administered to a subject prior to onset
(e.g., before obvious signs of infection) or during early onset
(e.g., upon initial signs and symptoms of infection). Prophylactic
administration can occur for several days to years prior to the
manifestation of symptoms of the infection. Prophylactic
administration can be used, for example, in the preventative
treatment of subjects diagnosed with a predisposition to influenza
infection. Therapeutic treatment involves administering to a
subject a therapeutically effective amount of the agents described
herein after diagnosis or development of infection.
[0062] As used herein the terms treatment, treat, or treating
refers to a method of reducing one or more of the effects of the
infection or one or more symptoms of the infection by eliciting an
immune response in the subject. Thus in the disclosed method,
treatment can refer to a 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%,
90%, or 100% reduction in the severity of an established infection
or a symptom of the infection. For example, a method for treating
an infection is considered to be a treatment if there is a 10%
reduction in one or more symptoms of the infection in a subject as
compared to a control. Thus the reduction can be a 10%, 20%, 30%,
40%, 50%, 60%, 70%, 80%, 90%, 100%, or any percent reduction in
between 10% and 100% as compared to native or control levels. It is
understood that treatment does not necessarily refer to a cure or
complete ablation of the infection or disease or symptoms of the
infection or disease.
[0063] As used herein, reducing the risk of an influenza infection,
refers to an action, for example, administration of a therapeutic
agent (e.g., a composition disclosed herein), to a subject at risk
of exposure to an influenza infection, that occurs prior to
exposure or at about the same time a subject begins to show one or
more symptoms of the infection, which inhibits or delays onset or
exacerbation or delays recurrence of one or more symptoms of the
infection. As used herein, references to decreasing, reducing, or
inhibiting include a change of 10%, 20%, 30%, 40%, 50%, 60%, 70%,
80%, 90% or greater as compared to a control level. For example,
the disclosed methods are considered to reduce the risk of
infection if there is about a 10% reduction in onset, exacerbation
or recurrence of infection, or symptoms of infection in a subject
exposed to an infection when compared to control subjects exposed
to an infection that did not receive a composition for decreasing
infection. Thus, the reduction in onset, exacerbation or recurrence
of infection can be about a 10, 20, 30, 40, 50, 60, 70, 80, 90,
100%, or any amount of reduction in between as compared to control
subjects. For example, and not to be limiting, if about 10% of the
subjects in a population do not become infected as compared to
subjects that did not receive preventive treatment, this is
considered prevention.
[0064] Further provided is a method of producing the influenza A
viruses disclosed herein comprising (a) transfecting a population
of host cells with one or more vectors comprising (i) nucleic acid
sequences encoding the internal genome segments of an influenza A
virus and (ii) a nucleic acid encoding a PB1 polymerase with one or
more mutations in amino acids 310 to 325; (b) culturing the host
cells; and c) recovering the modified influenza A virus. Methods
for producing influenza virus are known to those of skill in the
art. In the production methods described herein, a nucleic acid
encoding a PB1 polymerase with one or more mutations in amino acids
310 to 325 can be a nucleic acid encoding a PB1 polymerase with a
L319Q, a L319E, a L319N or L319D mutation. In another example, the
PB1 polymerase is a PB1 polymerase comprising a L319Q, a L319E, a
L319N or L319D mutation; and/or a mutation at position 323.
Optionally, the mutation at position 323 can be a threonine to
glutamic acid, aspartic acid, glutamine, asparagine or alanine
substitution at position 323. It is understood that other internal
genes encoding mutant sequences, for example, PB2 and NP, described
herein can be used in the methods provided herein to produce
modified influenza viruses comprising a mutant PB1 polymerase, a
mutant PB2 polymerase and/or a mutant NP.
[0065] In the production methods described herein, plasmids
incorporating the internal genes of an influenza master virus
strain, (i.e., PB1, PB2, PA, NP, M, NS1 and NS) are transfected
into suitable host cells in combination with hemagglutinin and
neuraminidase segments. See, for example, U.S. Pat. No. 8,354,114,
incorporated herein by reference. Optionally, the hemagglutinin and
neuraminidase segments can be from a strain predicted to cause
significant local or global influenza infection. Typically, the
master strain is selected on the basis of desirable properties
relevant to vaccine administration. For example, for vaccine
production, e.g., for production of a live attenuated vaccine, the
master donor virus strain can be selected for an attenuated
phenotype, cold adaptation and/or temperature sensitivity. For
example, Influenza A strain ca A/Ann Arbor/6/60 can be the master
donor virus (see, for example, Chan et al., Virology 380: 304-311
(2008). Following replication of the reassortant virus in cell
culture at appropriate temperatures for efficient recovery, for
example, at temperatures equal to or less than about 35.degree. C.,
such as from about 32.degree. C. to 35.degree. C., from about
32.degree. C. to about 34.degree. C., or from about 32.degree. C.
to about 33.degree. C., the reassortant virus is recovered.
Optionally, the recovered virus can be inactivated using a
denaturing agent such as formaldehyde or .beta.-propiolactone.
Optionally, in the production methods provided herein, the viruses
can be further amplified in chicken eggs.
[0066] Further provided is a method for producing an influenza
vaccine comprising (a) infecting a population of cells with any of
the viruses described herein; (b) culturing the cells; (c)
harvesting the virus from the culture of step (b); and (d)
preparing a vaccine with the harvested virus.
[0067] Once the virus is harvested from a cell culture, the virus
can be formulated and administered as a composition, according to
known methods, as an immunogenic composition to induce an immune
response in an animal, e.g., a mammal. Optionally, the immunogenic
composition can be formulated as an inactivated vaccine. Methods
are well-known in the art for determining whether such inactivated
vaccines have maintained similar antigenicity to that of the
clinical isolate or a high growth strain derived therefrom. As set
forth above, an immunogenic composition can be administered via all
the routes conventionally used or recommended for an immunogenic
composition. The immunogenic composition can be formulated as an
injectable or sprayable liquid, or as a formulation which has been
freeze-dried or dried by atomization or air-dried, etc. The
immunogenic composition can also be formulated for administration
via syringe or by means of a needle-free injector for
intramuscular, subcutaneous or intradermal injection. The
immunogenic composition can also be administered by means of a
nebulizer capable of delivering a dry powder or a liquid or
aerosolized spray to the mucous membranes.
[0068] A complete immunogenic composition can be concentrated by
ultrafiltration and then purified by zonal centrifugation or by
chromatography. Optionally, it can be inactivated before or after
purification using formalin or .beta.-propiolactone, for
example.
[0069] Disclosed are materials, compositions, and components that
can be used for, can be used in conjunction with, can be used in
preparation for, or are products of the disclosed methods and
compositions. These and other materials are disclosed herein, and
it is understood that when combinations, subsets, interactions,
groups, etc. of these materials are disclosed that while specific
reference of each various individual and collective combinations
and permutations of these compounds may not be explicitly
disclosed, each is specifically contemplated and described herein.
For example, if a method is disclosed and discussed and a number of
modifications that can be made to a number of molecules including
the method are discussed, each and every combination and
permutation of the method, and the modifications that are possible
are specifically contemplated unless specifically indicated to the
contrary. Likewise, any subset or combination of these is also
specifically contemplated and disclosed. This concept applies to
all aspects of this disclosure including, but not limited to, steps
in methods using the disclosed compositions. Thus, if there are a
variety of additional steps that can be performed, it is understood
that each of these additional steps can be performed with any
specific method steps or combination of method steps of the
disclosed methods, and that each such combination or subset of
combinations is specifically contemplated and should be considered
disclosed.
[0070] Publications cited herein and the material for which they
are cited are hereby specifically incorporated by reference in
their entireties.
EXAMPLES
[0071] The current live attenuated influenza vaccine (LAIV) is
recommended as the primary vaccination strategy for healthy
subjects aged 2 to 49 years, because of its greater efficacy and
ease-of-use than the traditional inactivated influenza vaccine in
this age group. However, the current LAIV is not recommended for
pregnant women, children under 2, persons with a compromised immune
system, (for example, persons with HIV/AIDS), or persons at high
risk for complications from influenza.
[0072] The current LAIV vaccine was originally derived through cold
adaptation, and subsequent work determined that the attenuating
gene segments correspond to the viral polymerase (PB1, PB2, PA) and
nucleoprotein (NP). Introduction of the attenuating PB2 segment
into the genetic background of a seasonal influenza virus
background resulted in temperature sensitivity and attenuation,
which could be overcome by serial passage of virus at elevated
temperatures.
[0073] These phenotypic revertant viruses were analyzed with the
goal of understanding the molecular mechanism underlying the
attenuation of LAIV. Methods for isolating and characterizing
mutant viruses, including characterization of
temperature-sensitivity are described in Treanor et al.
("Evaluation of the genetic stability of temperature-sensitive PB2
gene mutation of the influenza A/Ann Arbor/6/60 cold-adapted
vaccine virus," J. Virol. 68(12): 7684-8 (1994)) and Cox et al.
("Development of a Mouse-Adapted Live Attenuated Influenza Virus
That Permits In Vivo Analysis of Enhancements to the Safety of Live
Attenuated Influenza Virus Vaccine, Journal of Virology 89(6):
3421-3426 (2015)) which are hereby incorporated in their entireties
by this reference.
[0074] Mutations that result in substitutions at position 319 of
PB1 (L319Q, L319E and L319N) were made using the methods described
herein. The polymerase activity of the mutant was assayed using a
minigenome assay described in Bussey et al. ("PA residues in the
2009 H1N1 pandemic influenza virus enhance avian influenza virus
polymerase activity in mammalian cells," J. Virol. 85(14): 7020-8
(2011)), which is hereby incorporated in its entirety by this
reference. It was found that mutations in the PB1 gene (at residue
319) were sufficient to reverse the temperature sensitive phenotype
of the viral RNA polymerase, conferred by the LAIV PB2 gene
segment.
[0075] Growth studies were performed by constructing and
characterizing mutant viruses as set forth in Treanor et al.
Viruses were characterized for temperature sensitivity in the
following manner: confluent 6 well plates of MDCK cells or A549
cells were infected at a multiplicity of infection (MOI) of 0.01
with the ts single gene replacement virus and incubated at 34, 37
and 39.degree. C. for 72 hours in DMEM containing 0.3% bovine serum
albumin (BSA) and tosylsulfonylphenylalanyl chloromethyl ketone
(TPCK)-trypsin (1 .mu.g/ml). Every 12 hours (at 12, 24, 48, 72 and
96 hours post-infection) a sample of the culture supernatant was
harvested and replaced with fresh media. These samples were
clarified by centrifugation and stored at -80.degree. C. The
samples were then analyzed for viral titer through TCID-50
analysis, using hemagglutination of turkey red blood cells (RBCs)
as the endpoint, as described in Bussey et al.
[0076] The virus used in this analysis possessed the PB2 segment of
cold adapted temperature sensitive and attenuated A/Ann Arbor/6/60
(Genbank ID: AY209938.1) in the background of A/Korea/1982 (see
Treanor et al.). As set forth above, the PB2 segment of a seasonal
human influenza A virus strain (A/Korea/82 H3N2) was replaced with
the PB2 segment from the cold passaged isolate of A/AnnArbor/6/60.
The resulting single gene replacement virus is temperature
sensitive (ts) for growth at elevated temperatures. This virus
stock was subjected to serial passage at increasing temperatures,
in order to identify phenotypically revertant single gene
replacement viruses. The ts PB2 single gene replacement virus was
subjected to plaque purification and individual plaques were
analyzed for their temperature dependent growth properties. The
plaque purified viruses were expected to have growth at 34.degree.
C. and 37.degree. C., but not at 39.degree. C. (see FIG. 1). A
virus that had reduced growth at 37.degree. C. as well as at
39.degree. C. was purified.
[0077] All components of the viral polymerase were cloned into a
mammalian expression vector from the viral RNA and then analyzed.
Surprisingly, this system revealed a significant decrease in
polymerase activity at 37.degree. C. A number of residues were
found to be unique as compared to conserved influenza sequences and
their importance was examined through mutation to the conserved
residue by site directed mutagenesis. A residue of interest resided
in PB1, at amino acid 319, and was the substitution of a nonpolar
leucine with a polar glutamine (L319Q). The PB1 L319Q mutation
dramatically reduces functional activity of human influenza A virus
RNA polymerase at 37.degree. C. (see FIG. 2).
[0078] The impact of this mutation on other influenza A viruses
(JAY) was then examined. In these experiments an avian IAV
polymerase complex, the polymerase complex from the
low-pathogenicity virus, A/Chicken/Nanchang/3-120/01 H3N2, was
used. Introduction of the L319Q mutation in PB1 into this
polymerase also significantly reduced the functional activity of
this avian influenza A virus RNA polymerase at 37.degree. C. (FIG.
3). It was also found that a PB1 with a L319Q mutation synergizes
with three mutations (K391E, E581G and A661T) found in the LAIV
(FIG. 4). The polymerase activity was assayed using the minigenome
assay described in Bussey et al.
[0079] Additional experiments were conducted to further
characterize the temperature sensitivity of a modified vaccine
strain virus. Viruses were created through site directed
mutagenesis of the PR8 bidirectional plasmids described in
Martinez-Sobrido et al. ("Generation of Recombinant Influenza Virus
from Plasmid DNA," J. Vis. Exp. 42: 2057 (2010)). PR8 live
attenuated influenza virus (LAIV) possesses 4 amino acid mutations.
These mutations are N265S in PB2, K391E in PB1, E581G in PB1 and
A661T in PB1 as this virus already possess a glycine residue at
residue 34 of NP. PR8 LAIV+PB1 319Q possesses the mutation PB1
L319Q in addition to the 4 mutations present in PR8 LAIV. All
plasmids were sequenced to confirm successful site directed
mutagenesis and all rescued viruses were sequenced to confirm
retention of only the desired mutations. Both viruses were assayed
for temperature-sensitive growth via plaque assay, as described in
Bussey et al. When the four mutations of LAIV (N265S in PB2, K391E
in PB1, E581G in PB1 and A661T in PB1) were added to PR8 no virus
was detected by plaque assay at 39.degree. C. However, when PB1
319Q was added in addition to the four mutations of LAIV, no virus
growth occurred at 37.degree. C. as well (FIG. 5).
[0080] Experiments were also conducted to characterize the
stability of the L319Q mutation. The stability of a glutamine at
residue 319Q of PB1 was analyzed by inserting this mutation singly
in the background of a wild type virus to determine whether this
mutation is stable. These viruses were constructed via
site-directed mutagenesis of the PR8 bidirectional plasmids
described in Martinez-Sobrido et al. PB1 319Q possesses glutamine
instead of the wildtype leucine at residue 319 of PB1. All plasmids
were sequenced to confirm successful site-directed mutagenesis and
all rescued viruses were sequenced to confirm retention of only the
desired mutations. The viruses were then passaged an additional
three times at 30.degree. C., 33.degree. C., 37.degree. C. and
39.degree. C. The PB1 gene was then sequenced in its entirety as
described in Zhou et al. ("Single-reaction genomic amplification
accelerates sequencing and vaccine production for classical and
Swine origin human influenza a viruses," J. Virol. 19: 10309-13
(2009)), which is incorporated herein in its entirety by this
reference. After one passage, the virus showed uniform stability.
After two subsequent passages at each of 30.degree. C., 33.degree.
C., 37.degree. C. and 39.degree. C., all viruses retained glutamine
at this position. This shows that this mutation is stable at
various temperatures in influenza A viruses (FIG. 6).
[0081] Additional growth studies were performed using the methods
described herein. As shown in FIG. 7, the addition of PB1 L319Q
increases the temperature sensitivity of PR8 LAIV in MDCK cells and
A549 cells (FIG. 7.) As set forth above, PR8 LAIV+PB1 319Q
possesses the mutation PB1 L319Q in addition to the 4 mutations
present in PR8 LAIV.
[0082] In addition to determining the growth characteristics of an
influenza A virus comprising a PB1 polymerase with a L319Q
mutation, safety studies for this mutant virus were conducted.
[0083] For these safety studies, 5-7 week old female C57 BL/6 were
purchased from Jackson Laboratory (Bar Harbor, Me.). Mice were
inoculated intranasally with the indicated doses of virus (See FIG.
8) in a total volume of 30 .mu.L after avertin anesthetization as
described in Cox et al. (2015). Weight loss and clinical signs of
distress were measured daily. Mice were euthanized upon losing 30%
of their initial body weight or clinical signs of distress. Mean
lethal dose was calculated by the method of Reed and Meunch
(Journal of Epidemiology 27: 493-493 (1938)). FIG. 8 demonstrates
that PR8 LAIV plus 319Q has increased safety over the mutations of
LAIV alone. In fact, the safety increase is at least 1000 fold. An
additional cohort of mice was treated with 10.sup.6 FFU of PR8 LAIV
319Q that had been exposed to UV light for 20 min. This cohort
suffered no weight loss or clinical distress similar to the
infected mice. Fourteen days post infection mice were bled via
cheek bleeds for the collection of sera.
[0084] Convalescent sera was treated with receptor destroying
enzyme (BEI) for 18 hr at 37.degree. C. The resulting sera was
analyzed for its ability to block the hemagglutination of turkey
red blood cells by a known quantity of virus. Sera was serially
diluted in a 96 well plate, mixed with a known quantity of PR8
virus and incubated at room temperature for 30 min. 0.5% turkey red
blood cells were then added to the wells and allowed to
hemagluttinate. A dilution was positive if the sera was able to
prevent the virus blocking the hemagluttination of the red blood
cells. Depicted is the reciprocal of the lowest dilution of sera
that was able to inhibit viral mediated hemagluttination. See FIG.
9 showing that PR8 LAIV 319Q retains replication-dependent
immunogenicity. FIG. 9 shows that replicating virus is necessary
for protection, as UV inactivated virus did not cause
seroconversion. In addition, mice seroconverted at doses 1000-fold
lower than the highest administered dose. Statistical analysis was
performed by GraphPad Prism using one way Anova followed by Tukey's
post test (** p<0.0).
[0085] Twenty-one days post vaccination, mice were challenged with
100 LD.sub.50 of PR8 (homologous) or X-31 (heterologous) virus in a
total volume of 30 .mu.L after avertin anesthetization. As
described above, weight loss and clinical signs of distress were
measured daily and mice were euthanized upon losing 30% of their
initial body weight or clinical signs of distress. Mean lethal dose
was calculated as described above. FIG. 10 shows the protective
efficacy of influenza viruses containing a L319Q mutation in PB1
against homologous and heterologous lethal challenge. LAIV 319Q is
protective against both homologous (matched) and heterologous
(mismatched) strains of influenza. All mice that seroconverted were
protected from challenge with homologous virus, and all mice that
seroconverted for the matched strain were also protected against
the mismatched strain. Four mice that did not seroconvert in the
10.sup.3 FFU group were also protected against lethal
challenge.
[0086] Using the methods set forth herein, the activities of a PB1
polymerase comprising an L319E and a PB1 polymerase comprising an
L319N were assayed. It was found that a L319E mutation reversed the
temperature sensitive phenotype of the viral RNA polymerase,
conferred by the LAIV PB2 gene segment. Surprisingly, the PB1
polymerase comprising a L319E mutation had a 20-fold decrease in
activity at 37.degree. C., as compared to a 2-fold decrease in
activity for a PB1 polymerase comprising a L319Q mutation. The
L319N mutation also reversed the temperature sensitive phenotype of
the viral RNA polymerase, conferred by the LAIV PB2 gene segment.
The PB1 polymerase comprising a L319N mutation had a 5-fold
decrease in activity at 37.degree. C., as compared to a 2-fold
decrease in activity for a PB1 polymerase comprising a L319Q
mutation (FIG. 11).
[0087] It was also found that a PB1 with a L319Q or a L319E
mutation synergizes with a N265 S mutation found in PB2 (FIGS. 12
and 13, respectively). Surprisingly, an influenza virus with a PB1
L319E mutation results in a 3000-fold increase in safety as
compared to the PR8 virus and a 300 fold increase in safety as
compared to an influenza virus with a PB1 L319Q mutation. This
shows that, unexpectedly, changes to residue 319, for example, a Q
to E substitution, can dramatically impact the attenuation of the
resulting viruses. Therefore, altering the amino acid identity at
position 319, position 323, position 338 and/or 342 could result in
viruses with varied temperature sensitivity and safety over a large
range of administered doses. This could result in viruses that have
greater protection at lower doses due to their enhanced safety
coupled with robust growth at 33.degree. C.
[0088] FIG. 14 shows that a L319E synergizes with a PB2 N265S
mutation in A549 cells. Minigenome assays also showed that LAIV
with a PB1 L319N mutation has increased activity at 33.degree. C.
as compared to an LAIV with a PB1 L319Q mutation (FIG. 15). Thus,
L319E and L319N can be used to make live attenuated influenza
viruses. These mutations can also be used to further attenuate
existing live attenuated influenza viruses (LAIV), thereby
increasing their safety, and allowing for its use in populations in
which the vaccine is presently contraindicated.
TABLE-US-00002 SEQUENCES SEQ ID NO: 1 NENQNPRMFLAMITYI SEQ ID NO: 2
MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVNRTHQYSEKGKWTTN
TETGAHQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFENSCLETMEVIQQTR
VDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGRLIDFLKDVIESMDKE
EMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRSYLIRALTLNTMTKDAERGK
LKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKKAKLANVVRKMMTNS
QDTELSFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFRNVLSIAPIMFSNKMARLG
KGYMFKSKSMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLIDGTVSLSPGMMMGM
FNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPNHEGIQAGVDRFYRT
CKLVGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSMELPSFGVSGINESADMSIGVTVI
KNNMINNDLGPATAQLALQLFIKDYRYTYRCHRGDT
QIQTRRSFELKKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDEDYQGRLC
NPLNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILE
DEQMYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARIDFESGRIKKEEFAEIM
KICSTIEELRRQK SEQ ID NO: 3
MDVNPTLLFLKIPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
RTHQYSEKGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE
NSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGR
LIDFLKDVMESMNKEEIEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRLNKRGYLIRA
LTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGN
EKKAKLANVVRKMMTNSQDTEISFTITGDNTKWNENQNPRMFLAMITYITRNQPEWFR
NILSMAPIMFSNKMARLGKGYMFESKRMKIRTQIPAEMLASIDLKYFNESTKKKIEKIRP
LLIDGTASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTIYWWDGLQSSDDFALIVN
APNHEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSMELPSF
GVSGVNESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQIQT
RRSFELKKLWDQTQSKVGLLVSDGGPNLYNIRNLHIPEVCLKWELMDDDYRGRLCNPL
NPFVSHKEIDSVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDEQ
MYQKCCNLFEKFFPSSSYRRPVGISSMVEAMVSRARIDARVDFESGRIKKEEFSEIMKICS
TIEELRRQK SEQ ID NO: 4 MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
RTHQYSERGKWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGIFE
NSCLETMEAVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESGR
LIDFLKDVMESMDKEEMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQRVNKRGYLIR
ALTLNTMTKDAERGKLKRRAIATPGMQIRGFVYFVETLARSICEKLEQSGLPVGGNEKK
AKLANVVRKMMTNSQDTELSFTITGDNTKWNENQNPRMFLAMITYITKNQPEWFRNIL
SIAPIMFSNKMARLGKGYMFESKKMKLRTQIPAEMLASIDLKYFNESTRKKIEKIRPLLID
GTASLSPGMMMGMFNMLSTVLGVSILNLGQKKYTKTTYWWDGLQSSDDFALIVNAPN
HEGIQAGVDRFYRTCKLVGINMSKKKSYINKTGTFEFTSFFYRYGFVANFSME
LPSFGVSGINESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQI
QTRRSFEIKKLWDQTQSRAGLLVSDGGPNLYNIRNLHIPEVCLKWELMDENYRGRLCNP
LNPFVSHKEIESVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILEDE
QMYQKCCNLFEKFFPSSSYRRPIGISSMVEAMVSRARIDARIDFESGRIKKEEF
SEIMRICSTIEELRRQK SEQ ID NO: 5
MDVNPTLLFLKVPAQNAISTTFPYTGDPPYSHGTGTGYTMDTVN
RTHQYSEKGRWTTNTETGAPQLNPIDGPLPEDNEPSGYAQTDCVLEAMAFLEESHPGLF
ENSCLETMEVVQQTRVDKLTQGRQTYDWTLNRNQPAATALANTIEVFRSNGLTANESG
RLIDFLKDVMESMDKEEMEITTHFQRKRRVRDNMTKKMVTQRTIGKKKQKLTKKSYLI
RALTLNTMTKDAERGKLKRRAIATPGMQIRGFVHFVEALARSICEKLEQSGLPVGGN
EKKAKLANVVRKMMTNSQDTELSFTVTGDNTKWNENQNPRIFLAMITYITRNQPEWFR
NVLSIAPIMFSNKMARLGKGYMFESKSMKLRTQIPAEMLANIDLKYFNESTRKKIEKIRP
LLIEGTASLSPGMMMGMFNMLSTVLGVSILNLGQKRYTKTTYWWDGLQSSDDFALIVN
APNHEGIQAGVDRFYRTCKLVGINMSKKKSYINRTGTFEFTSFFYRYGFVANFSME
LPSFGVSGINESADMSIGVTVIKNNMINNDLGPATAQMALQLFIKDYRYTYRCHRGDTQI
QTRRSFELKKLWEQTRSKAGLLVSDGGPNLYNIRNLHIPEVGLKWELMDEDYQGRLCN
PLNPFVSHKEVESVNNAVVMPAHGPAKSMEYDAVATTHSWIPKRNRSILNTSQRGILED
EQMYQKCCTLFEKFFPSSSYRRPVGISSMMEAMVSRARIDARIDFESGRIKKEEFAEIL SEQ ID
NO: 6 1 atggatgtca atccgacctt acttttcttg aaagttccag cgcaaaatgc
cataagtact 61 acattccctt atactggaga tcctccatac agccatggaa
caggaacagg atacaccatg 121 gacacagtca acagaacaca tcaatattca
gaaaagggga agtggacaac aaacacggaa 181 actggagcgc accaacttaa
cccaattgat ggaccactac ctgaggacaa tgaaccaagt 241 ggatatgcac
aaacagactg cgtcctggaa gcaatggctt tccttgaaga atcccaccca 301
ggaatctttg aaaactcgtg tcttgaaacg atggaagtta ttcaacaaac aagagtggac
361 aaactgaccc aaggtcgtca gacctatgat tggacattga acagaaatca
gccggctgca 421 actgcgctag ccaacactat agaggtcttc agatcgaatg
gcctgacagc taatgaatcg 481 ggaaggctaa tagatttcct caaggatgtg
atagaatcaa tggataaaga ggagatggaa 541 atcacaacac acttccaaag
aaaaagaaga gtaagagaca acatgaccaa gaaaatggtc 601 acacaacgaa
caataggaaa gaagaagcaa agattgaaca agagaagcta tctaataaga 661
gcactgacat tgaacacaat gactaaagat gcagagagag gtaaattaaa gagaagagca
721 attgcaacac ccggtatgca gatcagaggg ttcgtgtact ttgtcgaaac
actagcgaga 781 agtatttgtg agaagcttga acagtctggg cttccggttg
gaggtaatga aaagaaggct 841 aaactggcaa atgttgtgcg aaaaatgatg
actaattcac aagacacaga gctctctttc 901 acaattactg gagacaatac
caaatggaat gagaatcaaa atcctcggat gttcctggcg 961 atgataacat
acatcacaag aaatcaacct gaatggttta gaaacgtcct gagcatcgca 1021
cctataatgt tctcaaataa aatggcaaga ctagggaaag gatacatgtt caaaagcaag
1081 agcatgaagc tccgaacaca aataccagca gaaatgctag caagtattga
cctgaaatac 1141 tttaatgaat caacaagaaa gaaaatcgag aaaataaggc
ctctcctaat agatggcaca 1201 gtctcattga gtcctggaat gatgatgggc
atgttcaaca tgctaagtac agtcttagga 1261 gtctcaatcc tgaatcttgg
acaaaagaag tacaccaaaa caacatactg gtgggacgga 1321 ctccaatcct
ctgatgactt cgccctcata gtgaatgcac caaatcatga gggaatacaa 1381
gcaggggtgg atagattcta cagaacctgc aagctagtcg gaatcaatat gagcaaaaag
1441 aagtcctaca taaataggac agggacattt gaattcacaa gctttttcta
tcgctatgga 1501 tttgtagcca attttagcat ggagctgccc agctttggag
tgtctggaat taatgaatcg 1561 gctgatatga gcattggggt aacagtgata
aagaacaaca tgataaacaa tgaccttggg 1621 ccagcaacag cccaactggc
tcttcaacta ttcatcaaag actacagata tacgtaccgg 1681 tgccacagag
gagacacaca aattcagaca aggagatcat tcgagctaaa gaagctgtgg 1741
gagcaaaccc gctcaaaggc aggacttttg gtttcggatg gaggaccaaa cttatacaat
1801 atccggaatc tccacattcc agaagtctgc ttgaagtggg agctaatgga
tgaagactat 1861 caggggaggc tttgtaatcc cctgaatcca tttgtcagtc
ataaggagat tgagtctgta 1921 aacaatgctg tggtaatgcc agctcacggt
ccagccaaga gcatggaata tgatgctgtt 1981 gctactacac actcctggat
ccctaagagg aaccgctcca ttctcaacac aagccaaagg 2041 ggaattcttg
aagatgaaca gatgtatcag aagtgttgca atctattcga gaaattcttc 2101
cctagcagtt cgtacaggag accagttgga atttccagca tggtggaggc catggtgtct
2161 agggcccgga ttgatgcacg gattgacttc gagtctggac ggattaagaa
agaggagttc 2221 gctgagatca tgaagatctg ttccaccatt gaagagctca
gacggcaaaa atag SEQ ID NO: 7
MERIKELRNLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPS
LRMKWMMAMKYPITADKRITEMIPERNEQGQTLWSKMSDAGSDRVMVSPLAVTWWN
RNGPMTSTVHYPKIYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEA
QDVIMEVVFPNEVGARILTSESQLTITKEKKEELQDCKISPLMVAYMLERELVRKTRFLP
VAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRAAVSADP
LASLLEMCHSTQIGGTRMVDILRQNPTEEQAVEICKAAMGLRISSSFSFGGFTFKRTSGSS
VKREEEVLTGNLQTLKIRVHEGYEEFTMVGKRATAILRKATRRLIQLIVSGRDEQSIAEAI
IVAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGIEHID
NVMGMIGVLPDMTPSTEMSMRGVRVSKMGVDEYSSAERVVVSIDRFLRVRDQR
GNVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQNP
TMLYNKMEFEPFQSLVPKAIRGQYSGFVRTLFQQMRDVLGTFDTTQIIKLLPFAAAPPKQ
SRMQFSSLTVNVRGSGMRILVRGNSPIFNYNKTTKRLTILGKDAGTLTEDPDEGTSGVES
AVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRN
SSILTDSQTATKRIRMAIN SEQ ID NO: 8
IKELWDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPALRM
KWMMAMKYPITADKRIMEMIPERNEQGQTLWSKTNDAGSDRVMESPLAVTWWNRNG
PTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDMNPGHADLSAKEAQD
VIMEVVFPNEVGARILTSESQLTITKEKREELKNCNIAPLMVAYMLERELVRKTRFLPVA
GGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAVGNIVRRATVSADPLASL
LEMCHSTQIGGVRMVDILKQNPTEEQAVDICKAAMGLKISSSFSFGGFTFKRTKGSSVKR
EEEVLTGNLQTLKIKVHEGYEEFTMVGRRATAILRKATRRMIQLIVSGRDEQSIAEAIIVA
MVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWGTEPIDNVM
GMIGILPDMTPSTEMSLRGVRVSKMGVDEYSSTERVVVSIDRFLRVRDQRGNVLLSPEE
VSETQGMEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWETVKIQWSQEPTMLYNKM
EFEPFQSLVPKAARSQYSGFVRTLFQQMRDVLGTFDTVQIIKLLPFAAAPPEQSRMQFSS
LTVNVRGSGMRILVRGNSPAFNYNKTTKRLTILGKDAGALTEDPDEGTAGVESAVLRGF
LILGKEDKRYGPALSINELSNLTKGEKANVLIGQGDVVLVMKRKRDSSI LTDSQTATKRI SEQ
ID NO: 9 MERIKELRDLMSQSRTREILTKTTVDHMAIIKKYTSGRQEKNPA
LRMKWMMAMKYPITADKRIMEMIPERNEQGQTLWSKTNDAGSDRVMVSPLAVTWWN
RNGPTTSTVHYPKVYKTYFEKVERLKHGTFGPVHFRNQVKIRRRVDINPGHADLSAKEA
QDVIMEVVFPNEVGARILTSESQLTITKEKKKELQDCKIAPLMVAYMLERELVRKTRFL
PVAGGTSSVYIEVLHLTQGTCWEQMYTPGGEVRNDDVDQSLIIAARNIVRRATVSADPL
ASLLEMCHSTQIGGIRMVDILRQNPTEEQAVDICKAAMGLRISSSFSFGGFTFKRTSGSSV
KREEEVLTGNLQTLKIRVHEGYEEFTMVGRRATAILRKATRRLIQLIVSGKDEQSIAEAII
VAMVFSQEDCMIKAVRGDLNFVNRANQRLNPMHQLLRHFQKDAKVLFQNWG
IEPIDNVMGMIGILPDMTPSTEMSLRGVRVSKMGVDEYSSTERVVVSIDRFLRVRDQRG
NVLLSPEEVSETQGTEKLTITYSSSMMWEINGPESVLVNTYQWIIRNWENVKIQWSQDPT
MLYNKMEFEPFQSLVPKAARGQYSGFVRVLFQQMRDVLGTFDTVQIIKLLPFAAAPPKQ
SRMQFSSLTVNVRGSGMRIVVRGNSPVFNYNKATKRLTVLGKDAGALMEDPDEG
TAGVESAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDS
SILTDSQTATKRIRMAIN SEQ ID NO: 10
SRTREILTKTTVDHMAIIKKYTSGRQEKNPSLRMKWMMAMKYPI
TADKRIMEMIPERNEQGQTLWSKTNDAGSNRVMVSPLAVTWWNRNGPTTSTIHYPKVY
KTYFEKVERLKHGTFGPVHFRNQVKIRRRVDVNPGHADLSAKEAQDVIMEVVFPNEVG
ARILTSESQLAITKEKKEE
Sequence CWU 1
1
10116PRTArtificial sequenceSynthetic construct 1Asn Glu Asn Gln Asn
Pro Arg Met Phe Leu Ala Met Ile Thr Tyr Ile 1 5 10 15
2757PRTInfluenza A virus 2Met Asp Val Asn Pro Thr Leu Leu Phe Leu
Lys Val Pro Ala Gln Asn 1 5 10 15 Ala Ile Ser Thr Thr Phe Pro Tyr
Thr Gly Asp Pro Pro Tyr Ser His 20 25 30 Gly Thr Gly Thr Gly Tyr
Thr Met Asp Thr Val Asn Arg Thr His Gln 35 40 45 Tyr Ser Glu Lys
Gly Lys Trp Thr Thr Asn Thr Glu Thr Gly Ala His 50 55 60 Gln Leu
Asn Pro Ile Asp Gly Pro Leu Pro Glu Asp Asn Glu Pro Ser 65 70 75 80
Gly Tyr Ala Gln Thr Asp Cys Val Leu Glu Ala Met Ala Phe Leu Glu 85
90 95 Glu Ser His Pro Gly Ile Phe Glu Asn Ser Cys Leu Glu Thr Met
Glu 100 105 110 Val Ile Gln Gln Thr Arg Val Asp Lys Leu Thr Gln Gly
Arg Gln Thr 115 120 125 Tyr Asp Trp Thr Leu Asn Arg Asn Gln Pro Ala
Ala Thr Ala Leu Ala 130 135 140 Asn Thr Ile Glu Val Phe Arg Ser Asn
Gly Leu Thr Ala Asn Glu Ser 145 150 155 160 Gly Arg Leu Ile Asp Phe
Leu Lys Asp Val Ile Glu Ser Met Asp Lys 165 170 175 Glu Glu Met Glu
Ile Thr Thr His Phe Gln Arg Lys Arg Arg Val Arg 180 185 190 Asp Asn
Met Thr Lys Lys Met Val Thr Gln Arg Thr Ile Gly Lys Lys 195 200 205
Lys Gln Arg Leu Asn Lys Arg Ser Tyr Leu Ile Arg Ala Leu Thr Leu 210
215 220 Asn Thr Met Thr Lys Asp Ala Glu Arg Gly Lys Leu Lys Arg Arg
Ala 225 230 235 240 Ile Ala Thr Pro Gly Met Gln Ile Arg Gly Phe Val
Tyr Phe Val Glu 245 250 255 Thr Leu Ala Arg Ser Ile Cys Glu Lys Leu
Glu Gln Ser Gly Leu Pro 260 265 270 Val Gly Gly Asn Glu Lys Lys Ala
Lys Leu Ala Asn Val Val Arg Lys 275 280 285 Met Met Thr Asn Ser Gln
Asp Thr Glu Leu Ser Phe Thr Ile Thr Gly 290 295 300 Asp Asn Thr Lys
Trp Asn Glu Asn Gln Asn Pro Arg Met Phe Leu Ala 305 310 315 320 Met
Ile Thr Tyr Ile Thr Arg Asn Gln Pro Glu Trp Phe Arg Asn Val 325 330
335 Leu Ser Ile Ala Pro Ile Met Phe Ser Asn Lys Met Ala Arg Leu Gly
340 345 350 Lys Gly Tyr Met Phe Lys Ser Lys Ser Met Lys Leu Arg Thr
Gln Ile 355 360 365 Pro Ala Glu Met Leu Ala Ser Ile Asp Leu Lys Tyr
Phe Asn Glu Ser 370 375 380 Thr Arg Lys Lys Ile Glu Lys Ile Arg Pro
Leu Leu Ile Asp Gly Thr 385 390 395 400 Val Ser Leu Ser Pro Gly Met
Met Met Gly Met Phe Asn Met Leu Ser 405 410 415 Thr Val Leu Gly Val
Ser Ile Leu Asn Leu Gly Gln Lys Lys Tyr Thr 420 425 430 Lys Thr Thr
Tyr Trp Trp Asp Gly Leu Gln Ser Ser Asp Asp Phe Ala 435 440 445 Leu
Ile Val Asn Ala Pro Asn His Glu Gly Ile Gln Ala Gly Val Asp 450 455
460 Arg Phe Tyr Arg Thr Cys Lys Leu Val Gly Ile Asn Met Ser Lys Lys
465 470 475 480 Lys Ser Tyr Ile Asn Arg Thr Gly Thr Phe Glu Phe Thr
Ser Phe Phe 485 490 495 Tyr Arg Tyr Gly Phe Val Ala Asn Phe Ser Met
Glu Leu Pro Ser Phe 500 505 510 Gly Val Ser Gly Ile Asn Glu Ser Ala
Asp Met Ser Ile Gly Val Thr 515 520 525 Val Ile Lys Asn Asn Met Ile
Asn Asn Asp Leu Gly Pro Ala Thr Ala 530 535 540 Gln Leu Ala Leu Gln
Leu Phe Ile Lys Asp Tyr Arg Tyr Thr Tyr Arg 545 550 555 560 Cys His
Arg Gly Asp Thr Gln Ile Gln Thr Arg Arg Ser Phe Glu Leu 565 570 575
Lys Lys Leu Trp Glu Gln Thr Arg Ser Lys Ala Gly Leu Leu Val Ser 580
585 590 Asp Gly Gly Pro Asn Leu Tyr Asn Ile Arg Asn Leu His Ile Pro
Glu 595 600 605 Val Cys Leu Lys Trp Glu Leu Met Asp Glu Asp Tyr Gln
Gly Arg Leu 610 615 620 Cys Asn Pro Leu Asn Pro Phe Val Ser His Lys
Glu Ile Glu Ser Val 625 630 635 640 Asn Asn Ala Val Val Met Pro Ala
His Gly Pro Ala Lys Ser Met Glu 645 650 655 Tyr Asp Ala Val Ala Thr
Thr His Ser Trp Ile Pro Lys Arg Asn Arg 660 665 670 Ser Ile Leu Asn
Thr Ser Gln Arg Gly Ile Leu Glu Asp Glu Gln Met 675 680 685 Tyr Gln
Lys Cys Cys Asn Leu Phe Glu Lys Phe Phe Pro Ser Ser Ser 690 695 700
Tyr Arg Arg Pro Val Gly Ile Ser Ser Met Val Glu Ala Met Val Ser 705
710 715 720 Arg Ala Arg Ile Asp Ala Arg Ile Asp Phe Glu Ser Gly Arg
Ile Lys 725 730 735 Lys Glu Glu Phe Ala Glu Ile Met Lys Ile Cys Ser
Thr Ile Glu Glu 740 745 750 Leu Arg Arg Gln Lys 755
3757PRTInfluenza A virus 3Met Asp Val Asn Pro Thr Leu Leu Phe Leu
Lys Ile Pro Ala Gln Asn 1 5 10 15 Ala Ile Ser Thr Thr Phe Pro Tyr
Thr Gly Asp Pro Pro Tyr Ser His 20 25 30 Gly Thr Gly Thr Gly Tyr
Thr Met Asp Thr Val Asn Arg Thr His Gln 35 40 45 Tyr Ser Glu Lys
Gly Lys Trp Thr Thr Asn Thr Glu Thr Gly Ala Pro 50 55 60 Gln Leu
Asn Pro Ile Asp Gly Pro Leu Pro Glu Asp Asn Glu Pro Ser 65 70 75 80
Gly Tyr Ala Gln Thr Asp Cys Val Leu Glu Ala Met Ala Phe Leu Glu 85
90 95 Glu Ser His Pro Gly Ile Phe Glu Asn Ser Cys Leu Glu Thr Met
Glu 100 105 110 Val Val Gln Gln Thr Arg Val Asp Lys Leu Thr Gln Gly
Arg Gln Thr 115 120 125 Tyr Asp Trp Thr Leu Asn Arg Asn Gln Pro Ala
Ala Thr Ala Leu Ala 130 135 140 Asn Thr Ile Glu Val Phe Arg Ser Asn
Gly Leu Thr Ala Asn Glu Ser 145 150 155 160 Gly Arg Leu Ile Asp Phe
Leu Lys Asp Val Met Glu Ser Met Asn Lys 165 170 175 Glu Glu Ile Glu
Ile Thr Thr His Phe Gln Arg Lys Arg Arg Val Arg 180 185 190 Asp Asn
Met Thr Lys Lys Met Val Thr Gln Arg Thr Ile Gly Lys Lys 195 200 205
Lys Gln Arg Leu Asn Lys Arg Gly Tyr Leu Ile Arg Ala Leu Thr Leu 210
215 220 Asn Thr Met Thr Lys Asp Ala Glu Arg Gly Lys Leu Lys Arg Arg
Ala 225 230 235 240 Ile Ala Thr Pro Gly Met Gln Ile Arg Gly Phe Val
Tyr Phe Val Glu 245 250 255 Thr Leu Ala Arg Ser Ile Cys Glu Lys Leu
Glu Gln Ser Gly Leu Pro 260 265 270 Val Gly Gly Asn Glu Lys Lys Ala
Lys Leu Ala Asn Val Val Arg Lys 275 280 285 Met Met Thr Asn Ser Gln
Asp Thr Glu Ile Ser Phe Thr Ile Thr Gly 290 295 300 Asp Asn Thr Lys
Trp Asn Glu Asn Gln Asn Pro Arg Met Phe Leu Ala 305 310 315 320 Met
Ile Thr Tyr Ile Thr Arg Asn Gln Pro Glu Trp Phe Arg Asn Ile 325 330
335 Leu Ser Met Ala Pro Ile Met Phe Ser Asn Lys Met Ala Arg Leu Gly
340 345 350 Lys Gly Tyr Met Phe Glu Ser Lys Arg Met Lys Ile Arg Thr
Gln Ile 355 360 365 Pro Ala Glu Met Leu Ala Ser Ile Asp Leu Lys Tyr
Phe Asn Glu Ser 370 375 380 Thr Lys Lys Lys Ile Glu Lys Ile Arg Pro
Leu Leu Ile Asp Gly Thr 385 390 395 400 Ala Ser Leu Ser Pro Gly Met
Met Met Gly Met Phe Asn Met Leu Ser 405 410 415 Thr Val Leu Gly Val
Ser Ile Leu Asn Leu Gly Gln Lys Lys Tyr Thr 420 425 430 Lys Thr Ile
Tyr Trp Trp Asp Gly Leu Gln Ser Ser Asp Asp Phe Ala 435 440 445 Leu
Ile Val Asn Ala Pro Asn His Glu Gly Ile Gln Ala Gly Val Asp 450 455
460 Arg Phe Tyr Arg Thr Cys Lys Leu Val Gly Ile Asn Met Ser Lys Lys
465 470 475 480 Lys Ser Tyr Ile Asn Lys Thr Gly Thr Phe Glu Phe Thr
Ser Phe Phe 485 490 495 Tyr Arg Tyr Gly Phe Val Ala Asn Phe Ser Met
Glu Leu Pro Ser Phe 500 505 510 Gly Val Ser Gly Val Asn Glu Ser Ala
Asp Met Ser Ile Gly Val Thr 515 520 525 Val Ile Lys Asn Asn Met Ile
Asn Asn Asp Leu Gly Pro Ala Thr Ala 530 535 540 Gln Met Ala Leu Gln
Leu Phe Ile Lys Asp Tyr Arg Tyr Thr Tyr Arg 545 550 555 560 Cys His
Arg Gly Asp Thr Gln Ile Gln Thr Arg Arg Ser Phe Glu Leu 565 570 575
Lys Lys Leu Trp Asp Gln Thr Gln Ser Lys Val Gly Leu Leu Val Ser 580
585 590 Asp Gly Gly Pro Asn Leu Tyr Asn Ile Arg Asn Leu His Ile Pro
Glu 595 600 605 Val Cys Leu Lys Trp Glu Leu Met Asp Asp Asp Tyr Arg
Gly Arg Leu 610 615 620 Cys Asn Pro Leu Asn Pro Phe Val Ser His Lys
Glu Ile Asp Ser Val 625 630 635 640 Asn Asn Ala Val Val Met Pro Ala
His Gly Pro Ala Lys Ser Met Glu 645 650 655 Tyr Asp Ala Val Ala Thr
Thr His Ser Trp Ile Pro Lys Arg Asn Arg 660 665 670 Ser Ile Leu Asn
Thr Ser Gln Arg Gly Ile Leu Glu Asp Glu Gln Met 675 680 685 Tyr Gln
Lys Cys Cys Asn Leu Phe Glu Lys Phe Phe Pro Ser Ser Ser 690 695 700
Tyr Arg Arg Pro Val Gly Ile Ser Ser Met Val Glu Ala Met Val Ser 705
710 715 720 Arg Ala Arg Ile Asp Ala Arg Val Asp Phe Glu Ser Gly Arg
Ile Lys 725 730 735 Lys Glu Glu Phe Ser Glu Ile Met Lys Ile Cys Ser
Thr Ile Glu Glu 740 745 750 Leu Arg Arg Gln Lys 755
4757PRTInfluenza A virus 4Met Asp Val Asn Pro Thr Leu Leu Phe Leu
Lys Val Pro Ala Gln Asn 1 5 10 15 Ala Ile Ser Thr Thr Phe Pro Tyr
Thr Gly Asp Pro Pro Tyr Ser His 20 25 30 Gly Thr Gly Thr Gly Tyr
Thr Met Asp Thr Val Asn Arg Thr His Gln 35 40 45 Tyr Ser Glu Arg
Gly Lys Trp Thr Thr Asn Thr Glu Thr Gly Ala Pro 50 55 60 Gln Leu
Asn Pro Ile Asp Gly Pro Leu Pro Glu Asp Asn Glu Pro Ser 65 70 75 80
Gly Tyr Ala Gln Thr Asp Cys Val Leu Glu Ala Met Ala Phe Leu Glu 85
90 95 Glu Ser His Pro Gly Ile Phe Glu Asn Ser Cys Leu Glu Thr Met
Glu 100 105 110 Ala Val Gln Gln Thr Arg Val Asp Lys Leu Thr Gln Gly
Arg Gln Thr 115 120 125 Tyr Asp Trp Thr Leu Asn Arg Asn Gln Pro Ala
Ala Thr Ala Leu Ala 130 135 140 Asn Thr Ile Glu Val Phe Arg Ser Asn
Gly Leu Thr Ala Asn Glu Ser 145 150 155 160 Gly Arg Leu Ile Asp Phe
Leu Lys Asp Val Met Glu Ser Met Asp Lys 165 170 175 Glu Glu Met Glu
Ile Thr Thr His Phe Gln Arg Lys Arg Arg Val Arg 180 185 190 Asp Asn
Met Thr Lys Lys Met Val Thr Gln Arg Thr Ile Gly Lys Lys 195 200 205
Lys Gln Arg Val Asn Lys Arg Gly Tyr Leu Ile Arg Ala Leu Thr Leu 210
215 220 Asn Thr Met Thr Lys Asp Ala Glu Arg Gly Lys Leu Lys Arg Arg
Ala 225 230 235 240 Ile Ala Thr Pro Gly Met Gln Ile Arg Gly Phe Val
Tyr Phe Val Glu 245 250 255 Thr Leu Ala Arg Ser Ile Cys Glu Lys Leu
Glu Gln Ser Gly Leu Pro 260 265 270 Val Gly Gly Asn Glu Lys Lys Ala
Lys Leu Ala Asn Val Val Arg Lys 275 280 285 Met Met Thr Asn Ser Gln
Asp Thr Glu Leu Ser Phe Thr Ile Thr Gly 290 295 300 Asp Asn Thr Lys
Trp Asn Glu Asn Gln Asn Pro Arg Met Phe Leu Ala 305 310 315 320 Met
Ile Thr Tyr Ile Thr Lys Asn Gln Pro Glu Trp Phe Arg Asn Ile 325 330
335 Leu Ser Ile Ala Pro Ile Met Phe Ser Asn Lys Met Ala Arg Leu Gly
340 345 350 Lys Gly Tyr Met Phe Glu Ser Lys Lys Met Lys Leu Arg Thr
Gln Ile 355 360 365 Pro Ala Glu Met Leu Ala Ser Ile Asp Leu Lys Tyr
Phe Asn Glu Ser 370 375 380 Thr Arg Lys Lys Ile Glu Lys Ile Arg Pro
Leu Leu Ile Asp Gly Thr 385 390 395 400 Ala Ser Leu Ser Pro Gly Met
Met Met Gly Met Phe Asn Met Leu Ser 405 410 415 Thr Val Leu Gly Val
Ser Ile Leu Asn Leu Gly Gln Lys Lys Tyr Thr 420 425 430 Lys Thr Thr
Tyr Trp Trp Asp Gly Leu Gln Ser Ser Asp Asp Phe Ala 435 440 445 Leu
Ile Val Asn Ala Pro Asn His Glu Gly Ile Gln Ala Gly Val Asp 450 455
460 Arg Phe Tyr Arg Thr Cys Lys Leu Val Gly Ile Asn Met Ser Lys Lys
465 470 475 480 Lys Ser Tyr Ile Asn Lys Thr Gly Thr Phe Glu Phe Thr
Ser Phe Phe 485 490 495 Tyr Arg Tyr Gly Phe Val Ala Asn Phe Ser Met
Glu Leu Pro Ser Phe 500 505 510 Gly Val Ser Gly Ile Asn Glu Ser Ala
Asp Met Ser Ile Gly Val Thr 515 520 525 Val Ile Lys Asn Asn Met Ile
Asn Asn Asp Leu Gly Pro Ala Thr Ala 530 535 540 Gln Met Ala Leu Gln
Leu Phe Ile Lys Asp Tyr Arg Tyr Thr Tyr Arg 545 550 555 560 Cys His
Arg Gly Asp Thr Gln Ile Gln Thr Arg Arg Ser Phe Glu Ile 565 570 575
Lys Lys Leu Trp Asp Gln Thr Gln Ser Arg Ala Gly Leu Leu Val Ser 580
585 590 Asp Gly Gly Pro Asn Leu Tyr Asn Ile Arg Asn Leu His Ile Pro
Glu 595 600 605 Val Cys Leu Lys Trp Glu Leu Met Asp Glu Asn Tyr Arg
Gly Arg Leu 610 615 620 Cys Asn Pro Leu Asn Pro Phe Val Ser His Lys
Glu Ile Glu Ser Val 625 630 635 640 Asn Asn Ala Val Val Met Pro Ala
His Gly Pro Ala Lys Ser Met Glu 645 650 655 Tyr Asp Ala Val Ala Thr
Thr His Ser Trp Ile Pro Lys Arg Asn Arg 660 665 670 Ser Ile Leu Asn
Thr Ser Gln Arg Gly Ile Leu Glu Asp Glu Gln Met 675 680 685 Tyr Gln
Lys Cys Cys Asn Leu Phe Glu Lys Phe Phe Pro Ser Ser Ser 690 695 700
Tyr Arg Arg Pro Ile Gly Ile Ser Ser Met Val Glu Ala Met Val Ser 705
710 715 720 Arg Ala Arg Ile Asp Ala Arg Ile Asp Phe Glu Ser Gly Arg
Ile Lys 725 730 735 Lys Glu Glu Phe Ser Glu Ile Met Arg Ile Cys Ser
Thr Ile Glu Glu 740 745 750 Leu Arg Arg Gln Lys 755
5744PRTInfluenza A virus 5Met Asp
Val Asn Pro Thr Leu Leu Phe Leu Lys Val Pro Ala Gln Asn 1 5 10 15
Ala Ile Ser Thr Thr Phe Pro Tyr Thr Gly Asp Pro Pro Tyr Ser His 20
25 30 Gly Thr Gly Thr Gly Tyr Thr Met Asp Thr Val Asn Arg Thr His
Gln 35 40 45 Tyr Ser Glu Lys Gly Arg Trp Thr Thr Asn Thr Glu Thr
Gly Ala Pro 50 55 60 Gln Leu Asn Pro Ile Asp Gly Pro Leu Pro Glu
Asp Asn Glu Pro Ser 65 70 75 80 Gly Tyr Ala Gln Thr Asp Cys Val Leu
Glu Ala Met Ala Phe Leu Glu 85 90 95 Glu Ser His Pro Gly Leu Phe
Glu Asn Ser Cys Leu Glu Thr Met Glu 100 105 110 Val Val Gln Gln Thr
Arg Val Asp Lys Leu Thr Gln Gly Arg Gln Thr 115 120 125 Tyr Asp Trp
Thr Leu Asn Arg Asn Gln Pro Ala Ala Thr Ala Leu Ala 130 135 140 Asn
Thr Ile Glu Val Phe Arg Ser Asn Gly Leu Thr Ala Asn Glu Ser 145 150
155 160 Gly Arg Leu Ile Asp Phe Leu Lys Asp Val Met Glu Ser Met Asp
Lys 165 170 175 Glu Glu Met Glu Ile Thr Thr His Phe Gln Arg Lys Arg
Arg Val Arg 180 185 190 Asp Asn Met Thr Lys Lys Met Val Thr Gln Arg
Thr Ile Gly Lys Lys 195 200 205 Lys Gln Lys Leu Thr Lys Lys Ser Tyr
Leu Ile Arg Ala Leu Thr Leu 210 215 220 Asn Thr Met Thr Lys Asp Ala
Glu Arg Gly Lys Leu Lys Arg Arg Ala 225 230 235 240 Ile Ala Thr Pro
Gly Met Gln Ile Arg Gly Phe Val His Phe Val Glu 245 250 255 Ala Leu
Ala Arg Ser Ile Cys Glu Lys Leu Glu Gln Ser Gly Leu Pro 260 265 270
Val Gly Gly Asn Glu Lys Lys Ala Lys Leu Ala Asn Val Val Arg Lys 275
280 285 Met Met Thr Asn Ser Gln Asp Thr Glu Leu Ser Phe Thr Val Thr
Gly 290 295 300 Asp Asn Thr Lys Trp Asn Glu Asn Gln Asn Pro Arg Ile
Phe Leu Ala 305 310 315 320 Met Ile Thr Tyr Ile Thr Arg Asn Gln Pro
Glu Trp Phe Arg Asn Val 325 330 335 Leu Ser Ile Ala Pro Ile Met Phe
Ser Asn Lys Met Ala Arg Leu Gly 340 345 350 Lys Gly Tyr Met Phe Glu
Ser Lys Ser Met Lys Leu Arg Thr Gln Ile 355 360 365 Pro Ala Glu Met
Leu Ala Asn Ile Asp Leu Lys Tyr Phe Asn Glu Ser 370 375 380 Thr Arg
Lys Lys Ile Glu Lys Ile Arg Pro Leu Leu Ile Glu Gly Thr 385 390 395
400 Ala Ser Leu Ser Pro Gly Met Met Met Gly Met Phe Asn Met Leu Ser
405 410 415 Thr Val Leu Gly Val Ser Ile Leu Asn Leu Gly Gln Lys Arg
Tyr Thr 420 425 430 Lys Thr Thr Tyr Trp Trp Asp Gly Leu Gln Ser Ser
Asp Asp Phe Ala 435 440 445 Leu Ile Val Asn Ala Pro Asn His Glu Gly
Ile Gln Ala Gly Val Asp 450 455 460 Arg Phe Tyr Arg Thr Cys Lys Leu
Val Gly Ile Asn Met Ser Lys Lys 465 470 475 480 Lys Ser Tyr Ile Asn
Arg Thr Gly Thr Phe Glu Phe Thr Ser Phe Phe 485 490 495 Tyr Arg Tyr
Gly Phe Val Ala Asn Phe Ser Met Glu Leu Pro Ser Phe 500 505 510 Gly
Val Ser Gly Ile Asn Glu Ser Ala Asp Met Ser Ile Gly Val Thr 515 520
525 Val Ile Lys Asn Asn Met Ile Asn Asn Asp Leu Gly Pro Ala Thr Ala
530 535 540 Gln Met Ala Leu Gln Leu Phe Ile Lys Asp Tyr Arg Tyr Thr
Tyr Arg 545 550 555 560 Cys His Arg Gly Asp Thr Gln Ile Gln Thr Arg
Arg Ser Phe Glu Leu 565 570 575 Lys Lys Leu Trp Glu Gln Thr Arg Ser
Lys Ala Gly Leu Leu Val Ser 580 585 590 Asp Gly Gly Pro Asn Leu Tyr
Asn Ile Arg Asn Leu His Ile Pro Glu 595 600 605 Val Gly Leu Lys Trp
Glu Leu Met Asp Glu Asp Tyr Gln Gly Arg Leu 610 615 620 Cys Asn Pro
Leu Asn Pro Phe Val Ser His Lys Glu Val Glu Ser Val 625 630 635 640
Asn Asn Ala Val Val Met Pro Ala His Gly Pro Ala Lys Ser Met Glu 645
650 655 Tyr Asp Ala Val Ala Thr Thr His Ser Trp Ile Pro Lys Arg Asn
Arg 660 665 670 Ser Ile Leu Asn Thr Ser Gln Arg Gly Ile Leu Glu Asp
Glu Gln Met 675 680 685 Tyr Gln Lys Cys Cys Thr Leu Phe Glu Lys Phe
Phe Pro Ser Ser Ser 690 695 700 Tyr Arg Arg Pro Val Gly Ile Ser Ser
Met Met Glu Ala Met Val Ser 705 710 715 720 Arg Ala Arg Ile Asp Ala
Arg Ile Asp Phe Glu Ser Gly Arg Ile Lys 725 730 735 Lys Glu Glu Phe
Ala Glu Ile Leu 740 62274DNAInfluenza A virus 6atggatgtca
atccgacctt acttttcttg aaagttccag cgcaaaatgc cataagtact 60acattccctt
atactggaga tcctccatac agccatggaa caggaacagg atacaccatg
120gacacagtca acagaacaca tcaatattca gaaaagggga agtggacaac
aaacacggaa 180actggagcgc accaacttaa cccaattgat ggaccactac
ctgaggacaa tgaaccaagt 240ggatatgcac aaacagactg cgtcctggaa
gcaatggctt tccttgaaga atcccaccca 300ggaatctttg aaaactcgtg
tcttgaaacg atggaagtta ttcaacaaac aagagtggac 360aaactgaccc
aaggtcgtca gacctatgat tggacattga acagaaatca gccggctgca
420actgcgctag ccaacactat agaggtcttc agatcgaatg gcctgacagc
taatgaatcg 480ggaaggctaa tagatttcct caaggatgtg atagaatcaa
tggataaaga ggagatggaa 540atcacaacac acttccaaag aaaaagaaga
gtaagagaca acatgaccaa gaaaatggtc 600acacaacgaa caataggaaa
gaagaagcaa agattgaaca agagaagcta tctaataaga 660gcactgacat
tgaacacaat gactaaagat gcagagagag gtaaattaaa gagaagagca
720attgcaacac ccggtatgca gatcagaggg ttcgtgtact ttgtcgaaac
actagcgaga 780agtatttgtg agaagcttga acagtctggg cttccggttg
gaggtaatga aaagaaggct 840aaactggcaa atgttgtgcg aaaaatgatg
actaattcac aagacacaga gctctctttc 900acaattactg gagacaatac
caaatggaat gagaatcaaa atcctcggat gttcctggcg 960atgataacat
acatcacaag aaatcaacct gaatggttta gaaacgtcct gagcatcgca
1020cctataatgt tctcaaataa aatggcaaga ctagggaaag gatacatgtt
caaaagcaag 1080agcatgaagc tccgaacaca aataccagca gaaatgctag
caagtattga cctgaaatac 1140tttaatgaat caacaagaaa gaaaatcgag
aaaataaggc ctctcctaat agatggcaca 1200gtctcattga gtcctggaat
gatgatgggc atgttcaaca tgctaagtac agtcttagga 1260gtctcaatcc
tgaatcttgg acaaaagaag tacaccaaaa caacatactg gtgggacgga
1320ctccaatcct ctgatgactt cgccctcata gtgaatgcac caaatcatga
gggaatacaa 1380gcaggggtgg atagattcta cagaacctgc aagctagtcg
gaatcaatat gagcaaaaag 1440aagtcctaca taaataggac agggacattt
gaattcacaa gctttttcta tcgctatgga 1500tttgtagcca attttagcat
ggagctgccc agctttggag tgtctggaat taatgaatcg 1560gctgatatga
gcattggggt aacagtgata aagaacaaca tgataaacaa tgaccttggg
1620ccagcaacag cccaactggc tcttcaacta ttcatcaaag actacagata
tacgtaccgg 1680tgccacagag gagacacaca aattcagaca aggagatcat
tcgagctaaa gaagctgtgg 1740gagcaaaccc gctcaaaggc aggacttttg
gtttcggatg gaggaccaaa cttatacaat 1800atccggaatc tccacattcc
agaagtctgc ttgaagtggg agctaatgga tgaagactat 1860caggggaggc
tttgtaatcc cctgaatcca tttgtcagtc ataaggagat tgagtctgta
1920aacaatgctg tggtaatgcc agctcacggt ccagccaaga gcatggaata
tgatgctgtt 1980gctactacac actcctggat ccctaagagg aaccgctcca
ttctcaacac aagccaaagg 2040ggaattcttg aagatgaaca gatgtatcag
aagtgttgca atctattcga gaaattcttc 2100cctagcagtt cgtacaggag
accagttgga atttccagca tggtggaggc catggtgtct 2160agggcccgga
ttgatgcacg gattgacttc gagtctggac ggattaagaa agaggagttc
2220gctgagatca tgaagatctg ttccaccatt gaagagctca gacggcaaaa atag
22747759PRTInfluenza A virus 7Met Glu Arg Ile Lys Glu Leu Arg Asn
Leu Met Ser Gln Ser Arg Thr 1 5 10 15 Arg Glu Ile Leu Thr Lys Thr
Thr Val Asp His Met Ala Ile Ile Lys 20 25 30 Lys Tyr Thr Ser Gly
Arg Gln Glu Lys Asn Pro Ser Leu Arg Met Lys 35 40 45 Trp Met Met
Ala Met Lys Tyr Pro Ile Thr Ala Asp Lys Arg Ile Thr 50 55 60 Glu
Met Ile Pro Glu Arg Asn Glu Gln Gly Gln Thr Leu Trp Ser Lys 65 70
75 80 Met Ser Asp Ala Gly Ser Asp Arg Val Met Val Ser Pro Leu Ala
Val 85 90 95 Thr Trp Trp Asn Arg Asn Gly Pro Met Thr Ser Thr Val
His Tyr Pro 100 105 110 Lys Ile Tyr Lys Thr Tyr Phe Glu Lys Val Glu
Arg Leu Lys His Gly 115 120 125 Thr Phe Gly Pro Val His Phe Arg Asn
Gln Val Lys Ile Arg Arg Arg 130 135 140 Val Asp Ile Asn Pro Gly His
Ala Asp Leu Ser Ala Lys Glu Ala Gln 145 150 155 160 Asp Val Ile Met
Glu Val Val Phe Pro Asn Glu Val Gly Ala Arg Ile 165 170 175 Leu Thr
Ser Glu Ser Gln Leu Thr Ile Thr Lys Glu Lys Lys Glu Glu 180 185 190
Leu Gln Asp Cys Lys Ile Ser Pro Leu Met Val Ala Tyr Met Leu Glu 195
200 205 Arg Glu Leu Val Arg Lys Thr Arg Phe Leu Pro Val Ala Gly Gly
Thr 210 215 220 Ser Ser Val Tyr Ile Glu Val Leu His Leu Thr Gln Gly
Thr Cys Trp 225 230 235 240 Glu Gln Met Tyr Thr Pro Gly Gly Glu Val
Arg Asn Asp Asp Val Asp 245 250 255 Gln Ser Leu Ile Ile Ala Ala Arg
Asn Ile Val Arg Arg Ala Ala Val 260 265 270 Ser Ala Asp Pro Leu Ala
Ser Leu Leu Glu Met Cys His Ser Thr Gln 275 280 285 Ile Gly Gly Thr
Arg Met Val Asp Ile Leu Arg Gln Asn Pro Thr Glu 290 295 300 Glu Gln
Ala Val Glu Ile Cys Lys Ala Ala Met Gly Leu Arg Ile Ser 305 310 315
320 Ser Ser Phe Ser Phe Gly Gly Phe Thr Phe Lys Arg Thr Ser Gly Ser
325 330 335 Ser Val Lys Arg Glu Glu Glu Val Leu Thr Gly Asn Leu Gln
Thr Leu 340 345 350 Lys Ile Arg Val His Glu Gly Tyr Glu Glu Phe Thr
Met Val Gly Lys 355 360 365 Arg Ala Thr Ala Ile Leu Arg Lys Ala Thr
Arg Arg Leu Ile Gln Leu 370 375 380 Ile Val Ser Gly Arg Asp Glu Gln
Ser Ile Ala Glu Ala Ile Ile Val 385 390 395 400 Ala Met Val Phe Ser
Gln Glu Asp Cys Met Ile Lys Ala Val Arg Gly 405 410 415 Asp Leu Asn
Phe Val Asn Arg Ala Asn Gln Arg Leu Asn Pro Met His 420 425 430 Gln
Leu Leu Arg His Phe Gln Lys Asp Ala Lys Val Leu Phe Gln Asn 435 440
445 Trp Gly Ile Glu His Ile Asp Asn Val Met Gly Met Ile Gly Val Leu
450 455 460 Pro Asp Met Thr Pro Ser Thr Glu Met Ser Met Arg Gly Val
Arg Val 465 470 475 480 Ser Lys Met Gly Val Asp Glu Tyr Ser Ser Ala
Glu Arg Val Val Val 485 490 495 Ser Ile Asp Arg Phe Leu Arg Val Arg
Asp Gln Arg Gly Asn Val Leu 500 505 510 Leu Ser Pro Glu Glu Val Ser
Glu Thr Gln Gly Thr Glu Lys Leu Thr 515 520 525 Ile Thr Tyr Ser Ser
Ser Met Met Trp Glu Ile Asn Gly Pro Glu Ser 530 535 540 Val Leu Val
Asn Thr Tyr Gln Trp Ile Ile Arg Asn Trp Glu Thr Val 545 550 555 560
Lys Ile Gln Trp Ser Gln Asn Pro Thr Met Leu Tyr Asn Lys Met Glu 565
570 575 Phe Glu Pro Phe Gln Ser Leu Val Pro Lys Ala Ile Arg Gly Gln
Tyr 580 585 590 Ser Gly Phe Val Arg Thr Leu Phe Gln Gln Met Arg Asp
Val Leu Gly 595 600 605 Thr Phe Asp Thr Thr Gln Ile Ile Lys Leu Leu
Pro Phe Ala Ala Ala 610 615 620 Pro Pro Lys Gln Ser Arg Met Gln Phe
Ser Ser Leu Thr Val Asn Val 625 630 635 640 Arg Gly Ser Gly Met Arg
Ile Leu Val Arg Gly Asn Ser Pro Ile Phe 645 650 655 Asn Tyr Asn Lys
Thr Thr Lys Arg Leu Thr Ile Leu Gly Lys Asp Ala 660 665 670 Gly Thr
Leu Thr Glu Asp Pro Asp Glu Gly Thr Ser Gly Val Glu Ser 675 680 685
Ala Val Leu Arg Gly Phe Leu Ile Leu Gly Lys Glu Asp Arg Arg Tyr 690
695 700 Gly Pro Ala Leu Ser Ile Asn Glu Leu Ser Asn Leu Ala Lys Gly
Glu 705 710 715 720 Lys Ala Asn Val Leu Ile Gly Gln Gly Asp Val Val
Leu Val Met Lys 725 730 735 Arg Lys Arg Asn Ser Ser Ile Leu Thr Asp
Ser Gln Thr Ala Thr Lys 740 745 750 Arg Ile Arg Met Ala Ile Asn 755
8751PRTInfluenza A virus 8Ile Lys Glu Leu Trp Asp Leu Met Ser Gln
Ser Arg Thr Arg Glu Ile 1 5 10 15 Leu Thr Lys Thr Thr Val Asp His
Met Ala Ile Ile Lys Lys Tyr Thr 20 25 30 Ser Gly Arg Gln Glu Lys
Asn Pro Ala Leu Arg Met Lys Trp Met Met 35 40 45 Ala Met Lys Tyr
Pro Ile Thr Ala Asp Lys Arg Ile Met Glu Met Ile 50 55 60 Pro Glu
Arg Asn Glu Gln Gly Gln Thr Leu Trp Ser Lys Thr Asn Asp 65 70 75 80
Ala Gly Ser Asp Arg Val Met Glu Ser Pro Leu Ala Val Thr Trp Trp 85
90 95 Asn Arg Asn Gly Pro Thr Thr Ser Thr Val His Tyr Pro Lys Val
Tyr 100 105 110 Lys Thr Tyr Phe Glu Lys Val Glu Arg Leu Lys His Gly
Thr Phe Gly 115 120 125 Pro Val His Phe Arg Asn Gln Val Lys Ile Arg
Arg Arg Val Asp Met 130 135 140 Asn Pro Gly His Ala Asp Leu Ser Ala
Lys Glu Ala Gln Asp Val Ile 145 150 155 160 Met Glu Val Val Phe Pro
Asn Glu Val Gly Ala Arg Ile Leu Thr Ser 165 170 175 Glu Ser Gln Leu
Thr Ile Thr Lys Glu Lys Arg Glu Glu Leu Lys Asn 180 185 190 Cys Asn
Ile Ala Pro Leu Met Val Ala Tyr Met Leu Glu Arg Glu Leu 195 200 205
Val Arg Lys Thr Arg Phe Leu Pro Val Ala Gly Gly Thr Ser Ser Val 210
215 220 Tyr Ile Glu Val Leu His Leu Thr Gln Gly Thr Cys Trp Glu Gln
Met 225 230 235 240 Tyr Thr Pro Gly Gly Glu Val Arg Asn Asp Asp Val
Asp Gln Ser Leu 245 250 255 Ile Ile Ala Val Gly Asn Ile Val Arg Arg
Ala Thr Val Ser Ala Asp 260 265 270 Pro Leu Ala Ser Leu Leu Glu Met
Cys His Ser Thr Gln Ile Gly Gly 275 280 285 Val Arg Met Val Asp Ile
Leu Lys Gln Asn Pro Thr Glu Glu Gln Ala 290 295 300 Val Asp Ile Cys
Lys Ala Ala Met Gly Leu Lys Ile Ser Ser Ser Phe 305 310 315 320 Ser
Phe Gly Gly Phe Thr Phe Lys Arg Thr Lys Gly Ser Ser Val Lys 325 330
335 Arg Glu Glu Glu Val Leu Thr Gly Asn Leu Gln Thr Leu Lys Ile Lys
340 345 350 Val His Glu Gly Tyr Glu Glu Phe Thr Met Val Gly Arg Arg
Ala Thr 355 360 365 Ala Ile Leu Arg Lys Ala Thr Arg Arg Met Ile Gln
Leu Ile Val Ser 370 375 380 Gly Arg Asp Glu Gln Ser Ile Ala Glu Ala
Ile Ile Val Ala Met Val 385 390 395 400 Phe Ser Gln Glu Asp Cys Met
Ile Lys Ala Val Arg Gly Asp Leu Asn 405 410 415 Phe Val Asn Arg Ala
Asn Gln Arg Leu Asn Pro Met His Gln Leu Leu 420 425 430 Arg His Phe
Gln Lys Asp Ala Lys Val Leu Phe Gln Asn Trp Gly Thr 435 440
445 Glu Pro Ile Asp Asn Val Met Gly Met Ile Gly Ile Leu Pro Asp Met
450 455 460 Thr Pro Ser Thr Glu Met Ser Leu Arg Gly Val Arg Val Ser
Lys Met 465 470 475 480 Gly Val Asp Glu Tyr Ser Ser Thr Glu Arg Val
Val Val Ser Ile Asp 485 490 495 Arg Phe Leu Arg Val Arg Asp Gln Arg
Gly Asn Val Leu Leu Ser Pro 500 505 510 Glu Glu Val Ser Glu Thr Gln
Gly Met Glu Lys Leu Thr Ile Thr Tyr 515 520 525 Ser Ser Ser Met Met
Trp Glu Ile Asn Gly Pro Glu Ser Val Leu Val 530 535 540 Asn Thr Tyr
Gln Trp Ile Ile Arg Asn Trp Glu Thr Val Lys Ile Gln 545 550 555 560
Trp Ser Gln Glu Pro Thr Met Leu Tyr Asn Lys Met Glu Phe Glu Pro 565
570 575 Phe Gln Ser Leu Val Pro Lys Ala Ala Arg Ser Gln Tyr Ser Gly
Phe 580 585 590 Val Arg Thr Leu Phe Gln Gln Met Arg Asp Val Leu Gly
Thr Phe Asp 595 600 605 Thr Val Gln Ile Ile Lys Leu Leu Pro Phe Ala
Ala Ala Pro Pro Glu 610 615 620 Gln Ser Arg Met Gln Phe Ser Ser Leu
Thr Val Asn Val Arg Gly Ser 625 630 635 640 Gly Met Arg Ile Leu Val
Arg Gly Asn Ser Pro Ala Phe Asn Tyr Asn 645 650 655 Lys Thr Thr Lys
Arg Leu Thr Ile Leu Gly Lys Asp Ala Gly Ala Leu 660 665 670 Thr Glu
Asp Pro Asp Glu Gly Thr Ala Gly Val Glu Ser Ala Val Leu 675 680 685
Arg Gly Phe Leu Ile Leu Gly Lys Glu Asp Lys Arg Tyr Gly Pro Ala 690
695 700 Leu Ser Ile Asn Glu Leu Ser Asn Leu Thr Lys Gly Glu Lys Ala
Asn 705 710 715 720 Val Leu Ile Gly Gln Gly Asp Val Val Leu Val Met
Lys Arg Lys Arg 725 730 735 Asp Ser Ser Ile Leu Thr Asp Ser Gln Thr
Ala Thr Lys Arg Ile 740 745 750 9759PRTInfluenza A virus 9Met Glu
Arg Ile Lys Glu Leu Arg Asp Leu Met Ser Gln Ser Arg Thr 1 5 10 15
Arg Glu Ile Leu Thr Lys Thr Thr Val Asp His Met Ala Ile Ile Lys 20
25 30 Lys Tyr Thr Ser Gly Arg Gln Glu Lys Asn Pro Ala Leu Arg Met
Lys 35 40 45 Trp Met Met Ala Met Lys Tyr Pro Ile Thr Ala Asp Lys
Arg Ile Met 50 55 60 Glu Met Ile Pro Glu Arg Asn Glu Gln Gly Gln
Thr Leu Trp Ser Lys 65 70 75 80 Thr Asn Asp Ala Gly Ser Asp Arg Val
Met Val Ser Pro Leu Ala Val 85 90 95 Thr Trp Trp Asn Arg Asn Gly
Pro Thr Thr Ser Thr Val His Tyr Pro 100 105 110 Lys Val Tyr Lys Thr
Tyr Phe Glu Lys Val Glu Arg Leu Lys His Gly 115 120 125 Thr Phe Gly
Pro Val His Phe Arg Asn Gln Val Lys Ile Arg Arg Arg 130 135 140 Val
Asp Ile Asn Pro Gly His Ala Asp Leu Ser Ala Lys Glu Ala Gln 145 150
155 160 Asp Val Ile Met Glu Val Val Phe Pro Asn Glu Val Gly Ala Arg
Ile 165 170 175 Leu Thr Ser Glu Ser Gln Leu Thr Ile Thr Lys Glu Lys
Lys Lys Glu 180 185 190 Leu Gln Asp Cys Lys Ile Ala Pro Leu Met Val
Ala Tyr Met Leu Glu 195 200 205 Arg Glu Leu Val Arg Lys Thr Arg Phe
Leu Pro Val Ala Gly Gly Thr 210 215 220 Ser Ser Val Tyr Ile Glu Val
Leu His Leu Thr Gln Gly Thr Cys Trp 225 230 235 240 Glu Gln Met Tyr
Thr Pro Gly Gly Glu Val Arg Asn Asp Asp Val Asp 245 250 255 Gln Ser
Leu Ile Ile Ala Ala Arg Asn Ile Val Arg Arg Ala Thr Val 260 265 270
Ser Ala Asp Pro Leu Ala Ser Leu Leu Glu Met Cys His Ser Thr Gln 275
280 285 Ile Gly Gly Ile Arg Met Val Asp Ile Leu Arg Gln Asn Pro Thr
Glu 290 295 300 Glu Gln Ala Val Asp Ile Cys Lys Ala Ala Met Gly Leu
Arg Ile Ser 305 310 315 320 Ser Ser Phe Ser Phe Gly Gly Phe Thr Phe
Lys Arg Thr Ser Gly Ser 325 330 335 Ser Val Lys Arg Glu Glu Glu Val
Leu Thr Gly Asn Leu Gln Thr Leu 340 345 350 Lys Ile Arg Val His Glu
Gly Tyr Glu Glu Phe Thr Met Val Gly Arg 355 360 365 Arg Ala Thr Ala
Ile Leu Arg Lys Ala Thr Arg Arg Leu Ile Gln Leu 370 375 380 Ile Val
Ser Gly Lys Asp Glu Gln Ser Ile Ala Glu Ala Ile Ile Val 385 390 395
400 Ala Met Val Phe Ser Gln Glu Asp Cys Met Ile Lys Ala Val Arg Gly
405 410 415 Asp Leu Asn Phe Val Asn Arg Ala Asn Gln Arg Leu Asn Pro
Met His 420 425 430 Gln Leu Leu Arg His Phe Gln Lys Asp Ala Lys Val
Leu Phe Gln Asn 435 440 445 Trp Gly Ile Glu Pro Ile Asp Asn Val Met
Gly Met Ile Gly Ile Leu 450 455 460 Pro Asp Met Thr Pro Ser Thr Glu
Met Ser Leu Arg Gly Val Arg Val 465 470 475 480 Ser Lys Met Gly Val
Asp Glu Tyr Ser Ser Thr Glu Arg Val Val Val 485 490 495 Ser Ile Asp
Arg Phe Leu Arg Val Arg Asp Gln Arg Gly Asn Val Leu 500 505 510 Leu
Ser Pro Glu Glu Val Ser Glu Thr Gln Gly Thr Glu Lys Leu Thr 515 520
525 Ile Thr Tyr Ser Ser Ser Met Met Trp Glu Ile Asn Gly Pro Glu Ser
530 535 540 Val Leu Val Asn Thr Tyr Gln Trp Ile Ile Arg Asn Trp Glu
Asn Val 545 550 555 560 Lys Ile Gln Trp Ser Gln Asp Pro Thr Met Leu
Tyr Asn Lys Met Glu 565 570 575 Phe Glu Pro Phe Gln Ser Leu Val Pro
Lys Ala Ala Arg Gly Gln Tyr 580 585 590 Ser Gly Phe Val Arg Val Leu
Phe Gln Gln Met Arg Asp Val Leu Gly 595 600 605 Thr Phe Asp Thr Val
Gln Ile Ile Lys Leu Leu Pro Phe Ala Ala Ala 610 615 620 Pro Pro Lys
Gln Ser Arg Met Gln Phe Ser Ser Leu Thr Val Asn Val 625 630 635 640
Arg Gly Ser Gly Met Arg Ile Val Val Arg Gly Asn Ser Pro Val Phe 645
650 655 Asn Tyr Asn Lys Ala Thr Lys Arg Leu Thr Val Leu Gly Lys Asp
Ala 660 665 670 Gly Ala Leu Met Glu Asp Pro Asp Glu Gly Thr Ala Gly
Val Glu Ser 675 680 685 Ala Val Leu Arg Gly Phe Leu Ile Leu Gly Lys
Glu Asp Lys Arg Tyr 690 695 700 Gly Pro Ala Leu Ser Ile Asn Glu Leu
Ser Asn Leu Ala Lys Gly Glu 705 710 715 720 Lys Ala Asn Val Leu Ile
Gly Gln Gly Asp Val Val Leu Val Met Lys 725 730 735 Arg Lys Arg Asp
Ser Ser Ile Leu Thr Asp Ser Gln Thr Ala Thr Lys 740 745 750 Arg Ile
Arg Met Ala Ile Asn 755 10179PRTInfluenza A virus 10Ser Arg Thr Arg
Glu Ile Leu Thr Lys Thr Thr Val Asp His Met Ala 1 5 10 15 Ile Ile
Lys Lys Tyr Thr Ser Gly Arg Gln Glu Lys Asn Pro Ser Leu 20 25 30
Arg Met Lys Trp Met Met Ala Met Lys Tyr Pro Ile Thr Ala Asp Lys 35
40 45 Arg Ile Met Glu Met Ile Pro Glu Arg Asn Glu Gln Gly Gln Thr
Leu 50 55 60 Trp Ser Lys Thr Asn Asp Ala Gly Ser Asn Arg Val Met
Val Ser Pro 65 70 75 80 Leu Ala Val Thr Trp Trp Asn Arg Asn Gly Pro
Thr Thr Ser Thr Ile 85 90 95 His Tyr Pro Lys Val Tyr Lys Thr Tyr
Phe Glu Lys Val Glu Arg Leu 100 105 110 Lys His Gly Thr Phe Gly Pro
Val His Phe Arg Asn Gln Val Lys Ile 115 120 125 Arg Arg Arg Val Asp
Val Asn Pro Gly His Ala Asp Leu Ser Ala Lys 130 135 140 Glu Ala Gln
Asp Val Ile Met Glu Val Val Phe Pro Asn Glu Val Gly 145 150 155 160
Ala Arg Ile Leu Thr Ser Glu Ser Gln Leu Ala Ile Thr Lys Glu Lys 165
170 175 Lys Glu Glu
* * * * *
References