U.S. patent application number 14/527834 was filed with the patent office on 2015-05-21 for ilt3 binding molecules and uses therefor.
The applicant listed for this patent is MERCK SHARP & DOHME CORP.. Invention is credited to Paul Ponath, Jose F. Ponte, Patricia Rao, Michael Rosenzweig, Lesley Mary Smith.
Application Number | 20150139986 14/527834 |
Document ID | / |
Family ID | 37571303 |
Filed Date | 2015-05-21 |
United States Patent
Application |
20150139986 |
Kind Code |
A1 |
Ponath; Paul ; et
al. |
May 21, 2015 |
ILT3 BINDING MOLECULES AND USES THEREFOR
Abstract
The present invention provides binding molecules that
specifically bind to ILT3, e.g., human ILT3 (hILT3), on antigen
presenting cells, such as for example, monocytes, macrophages and
dendritic cells (DC), e.g., monocyte-derived dendritic cells
(MDDC). The binding molecules of the invention are characterized by
binding to hILT3 with high affinity and downmodulating immune
responses in vitro, e.g., downmodulating alloimmune responses; the
production of inflammatory cytokines by dendritic cells, e.g.,
monocyte-derived dendritic cells (MDDC); the upregulation of
costimulatory molecules by DC, e.g., MDDC; and/or calcium flux in
monocytes. In addition, the binding molecules upregulate the
expression of inhibitory receptors on dendritic cells, e.g.,
immature dendritic cells. Surprisingly, these same binding
molecules which downmodulate immune responses in vitro, are
immunostimulatory in vivo. Various aspects of the invention relate
to binding molecules, and pharmaceutical compositions thereof.
Methods of using the binding molecules of the invention to detect
human ILT3 or to modulate human ILT3 activity, either in vitro or
in vivo, are also encompassed by the invention.
Inventors: |
Ponath; Paul; (San
Francisco, CA) ; Rao; Patricia; (Acton, MA) ;
Rosenzweig; Michael; (Boston, MA) ; Smith; Lesley
Mary; (Durham, NC) ; Ponte; Jose F.;
(Weymouth, MA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
MERCK SHARP & DOHME CORP. |
Rahway |
NJ |
US |
|
|
Family ID: |
37571303 |
Appl. No.: |
14/527834 |
Filed: |
October 30, 2014 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
|
|
11471397 |
Jun 19, 2006 |
8901281 |
|
|
14527834 |
|
|
|
|
60691912 |
Jun 17, 2005 |
|
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Current U.S.
Class: |
424/133.1 ;
424/135.1; 424/139.1; 435/375 |
Current CPC
Class: |
A61K 2039/505 20130101;
C07K 16/2803 20130101; A61P 37/06 20180101; A61P 35/00 20180101;
A61P 37/02 20180101; C07K 14/70503 20130101; A61P 37/04 20180101;
C07K 2317/565 20130101; C07K 2317/24 20130101 |
Class at
Publication: |
424/133.1 ;
424/139.1; 424/135.1; 435/375 |
International
Class: |
C07K 16/28 20060101
C07K016/28 |
Claims
1-26. (canceled)
27. A method for upmodulating an immune response in a subject,
comprising contacting a cell from the subject with an anti-ILT3
antibody or an antigen binding fragment thereof that inhibits
immune cell activation in vitro.
28. (canceled)
29. A method for treating cancer in a subject, comprising
contacting a cell with an anti-ILT3 antibody, such that cancer is
treated in a subject.
30. The method of claim 29, wherein the type of cancer is selected
from the group consisting of: pancreatic cancer, melanomas, breast
cancer, lung cancer, bronchus cancer, colorectal cancer, prostate
cancer, pancreas cancer, stomach cancer, ovarian cancer, urinary
bladder cancer, brain or central nervous system cancer, peripheral
nervous system cancer, esophageal cancer, cervical cancer, uterine
or endometrial cancer, cancer of the oral cavity or pharynx, liver
cancer, kidney cancer, testicular cancer, biliary tract cancer,
small bowel or appendix cancer, salivary gland cancer, thyroid
gland cancer, adrenal gland cancer, osteosarcoma, chondrosarcoma,
and cancer of hematological tissues.
31-43. (canceled)
44. The method of claim 27 or 29, wherein the anti-ILT-3 antibody
comprises: a. a heavy chain variable region (VH) complementarity
determining region 1 (VH CDR1) comprising the amino acid sequence
shown in SEQ ID NO: 3; b. a heavy chain variable region (VH)
complementarity determining region 2 (VH CDR2) comprising the amino
acid sequence shown in SEQ ID NO: 4; c. a heavy chain variable
region (VH) complementarity determining region 3 (VH CDR3)
comprising the amino acid sequence shown in SEQ ID NO: 5; d. a
light chain variable region (VL) complementarity determining region
1 (VL CDR1) comprising the amino acid sequence shown in SEQ ID NO:
6; e. a light chain variable region (VL) complementarity
determining region 2 (VL CDR2) comprising the amino acid sequence
shown in SEQ ID NO: 7; and f. a light chain variable region (VL)
complementarity determining region 3 (VL CDR3) comprising the amino
acid sequence shown in SEQ ID NO: 8.
45. The method of claim 44, wherein the anti-ILT-3 antibody
comprises: a heavy chain variable region comprising amino acids
20-135 of SEQ ID NO: 1 and a light chain variable region comprising
amino acids 21-127 of SEQ ID NO: 2, wherein said antibody or
antigen-binding fragment specifically binds a polypeptide
consisting of the amino acid sequence of SEQ ID NO: 18.
46. The method of claim 44, wherein the antibody comprises a heavy
chain constant region.
47. The method of claim 46, wherein the heavy chain constant region
is a IgG1 heavy chain constant region.
48. The method of claim 44, wherein the antibody comprises a human
heavy chain constant region.
49. The method of claim 48, wherein the antibody further comprises
a human light chain constant region.
50. The method of claim 48, wherein the heavy chain constant region
is a human IgG1 heavy chain constant region.
51. The method of claim 50, wherein the human heavy chain constant
region comprises the amino acid sequence shown in one of SEQ ID
NOs: 28-29.
51. The method of claim 44, wherein the antibody comprises: the VH
CDR1 of SEQ ID NO: 3; the VH CDR2 of SEQ ID NO: 4, the VH CDR3 of
SEQ ID NO: 5; the VL CDR1 of SEQ ID NO: 6, the VL CDR2 of SEQ ID
NO: 7 and the VL CDR3 of SEQ ID NO: 8, wherein framework regions of
the VH are human VH framework regions, and wherein framework
regions of the VL are human VL framework regions.
52. The method of claim 44, wherein the antibody or antigen-binding
fragment is selected from the group consisting of a single chain
antibody, an scFv fragment, a Fab fragment, a F(ab)2 fragment, a
humanized antibody, and a chimeric antibody.
Description
CROSS REFERENCE TO RELATED APPLICATIONS
[0001] This application is a division of U.S. application Ser. No.
11/471,397, filed Jun. 19, 2006, now pending, which claims the
benefit under 35 U.S.C. 119(e) of U.S. Provisional Application No.
60/691,912, filed Jun. 17, 2005, now expired, and U.S. Provisional
Application No. 60/723,340, filed Oct. 5, 2005, now expired.
REFERENCE TO SEQUENCE LISTING SUBMITTED ELECTRONICALLY
[0002] The sequence listing of the present application is submitted
electronically via EFS-Web as an ASCII formatted sequence listing
with a file name "23749_US_DIV_SEQLIST.TXT", creation date of Sep.
5, 2014, and a size of 39 KB. This sequence listing submitted via
EFS-Web is part of the specification and is herein incorporated by
reference in its entirety.
BACKGROUND OF THE INVENTION
[0003] Immunoglobulin-like transcript (ILT) 3 is a cell surface
molecule that is a member of the immunoglobulin superfamily. ILT3
is selectively expressed by myeloid antigen presenting cells (APCs)
such as monocytes, macrophages, and dendritic cells (DC). The
cytoplasmic region of ILT3 contains putative immunoreceptor
tyrosine-based inhibitory motifs (ITIMs). Co-ligation of ILT3 to
stimulatory receptors expressed by APCs results in a blunting of
the increased [Ca2+] flux and tyrosine phosphorylation triggered by
these receptors. Signal extinction involves SH2-containing protein
tyrosine phosphatase 1, which is recruited by ILT3 upon
cross-linking. ILT3 can also function in antigen capture and
presentation. It is efficiently internalized upon cross-linking and
delivers its ligand to an intracellular compartment where it is
processed and presented to T cells (Cella, et al. (1997) J. Exp.
Med. 185:1743-1751).
[0004] Thus, ILT3 is an inhibitory receptor that can negatively
regulate activation of APCs and can be used by APCs for antigen
uptake. The development of agents useful in modulating signaling
via ILT3 would be of great benefit in modulating immune
responses.
SUMMARY OF THE INVENTION
[0005] The present invention provides binding molecules that
specifically bind to ILT3, e.g., human ILT3 (hILT3), on cells, such
as antigen presenting cells, e.g., monocytes, macrophages and
dendritic cells, e.g., monocyte-derived dendritic cells. The
binding molecules of the invention are characterized by binding to
hILT3 with high affinity and downmodulating immune cell activation
in vitro, e.g., downmodulating alloimmune responses; the production
of inflammatory cytokines by dendritic cells, e.g.,
monocyte-derived dendritic cells (MDDC); the upregulation of
costimulatory molecules by DC, e.g., MDDC; and/or calcium flux in
monocytes. In addition, the binding molecules upregulate the
expression of inhibitory receptors on dendritic cells, e.g.,
immature dendritic cells. Surprisingly, these same binding
molecules which downmodulate immune cell activation in vitro, are
immunostimulatory in vivo, e.g., upmodulate immune responses.
[0006] Accordingly, one aspect of the invention features a binding
molecule comprising the amino acid sequence of SEQ ID NO:1.
[0007] In another aspect, the invention features a binding molecule
comprising the amino acid sequence of SEQ ID NO:2.
[0008] Yet another aspect of the invention features a binding
molecule comprising at least one complementarity determining region
(CDR) amino acid sequence selected from the group consisting of:
SEQ ID NO:3, SEQ ID NO:4, and SEQ ID NO:5. In one embodiment, the
binding molecule comprises at least two complementarity determining
region (CDR) amino acid sequence selected from the group consisting
of: SEQ ID NO:3, SEQ ID NO:4, and SEQ ID NO:5. In another
embodiment, the binding molecule comprises at least three
complementarity determining region (CDR) amino acid sequence
selected from the group consisting of: SEQ ID NO:3, SEQ ID NO:4,
and SEQ ID NO:5.
[0009] Another aspect of the invention features a binding molecule
comprising at least one complementarity determining region (CDR)
amino acid sequence selected from the group consisting of: SEQ ID
NO:6, SEQ ID NO:7, and SEQ ID NO:8. In one embodiment, the binding
molecule comprises at least two complementarity determining region
(CDR) amino acid sequence selected from the group consisting of:
SEQ ID NO:6, SEQ ID NO:7, and SEQ ID NO:8. In another embodiment,
the binding molecule comprises at least three complementarity
determining region (CDR) amino acid sequence selected from the
group consisting of: SEQ ID NO:6, SEQ ID NO:7, and SEQ ID NO:8.
[0010] Another aspect of the invention features a binding molecule
comprising the CDRs shown in SEQ ID NOs: 3-8.
[0011] One aspect of the invention features a binding molecule
comprising a heavy chain variable region comprising the amino acid
sequence of SEQ ID NO:1 and further comprising a light chain
variable region comprising the amino acid sequence of SEQ ID
NO:2.
[0012] Another aspect of the invention features a binding molecule
that binds to ILT3 on human monocyte-derived dendritic cells (MDDC)
and has a binding constant (Kd) of 0.9.times.10.sup.-9 or less.
[0013] In one embodiment, the binding molecule downmodulates immune
cell activation in vitro.
[0014] In another embodiment, the binding molecule upmodulates
immune response in vivo.
[0015] In yet another embodiment, the constant region of the
binding molecule comprises an IgG1 heavy chain constant region.
[0016] In one embodiment, the binding molecule binds to human ILT3
on dendritic cells
[0017] In another embodiment, the binding molecule binds to human
ILT3 on monocytes.
[0018] In yet another embodiment, the binding molecule
downmodulates the production of inflammatory cytokines by dendritic
cells in vitro.
[0019] In one embodiment, the binding molecule downmodulates the
upregulation of costimulatory molecules on dendritic cells in
vitro.
[0020] In another embodiment, the binding molecule upmodulates the
expression of inhibitory receptors on dendritic cells in vitro.
[0021] In one embodiment, the binding molecule is a mouse
antibody.
[0022] In another embodiment, the binding molecule is a humanized
antibody.
[0023] In yet another embodiment, the binding molecule is a
chimeric antibody.
[0024] Another aspect of the invention features a composition
comprising a binding molecule of the invention and a
pharmaceutically acceptable carrier.
[0025] In one embodiment, the composition further comprises at
least one additional therapeutic agent which upmodulates an immune
response in a subject.
[0026] One aspect of the invention features a method for
upmodulating an immune response in a subject, comprising contacting
a cell from the subject with an anti-ILT3 antibody that inhibits
immune cell activation in vitro.
[0027] Another aspect of the invention features a method for
downmodulating transplant rejection in a subject, comprising
contacting a cell from the subject with a binding molecule of the
invention, and re-introducing the cell into the subject at the time
of or prior to transplantation such that transplant rejection in a
subject is downmodulated.
[0028] Yet another aspect of the invention features a method for
treating cancer in a subject, comprising contacting a cell with a
binding molecule of the invention, such that cancer is treated in a
subject.
[0029] In one embodiment, the type of cancer is selected from the
group consisting of: pancreatic cancer, melanomas, breast cancer,
lung cancer, bronchus cancer, colorectal cancer, prostate cancer,
pancreas cancer, stomach cancer, ovarian cancer, urinary bladder
cancer, brain or central nervous system cancer, peripheral nervous
system cancer, esophageal cancer, cervical cancer, uterine or
endometrial cancer, cancer of the oral cavity or pharynx, liver
cancer, kidney cancer, testicular cancer, biliary tract cancer,
small bowel or appendix cancer, salivary gland cancer, thyroid
gland cancer, adrenal gland cancer, osteosarcoma, chondrosarcoma,
and cancer of hematological tissues.
[0030] One aspect of the invention features an isolated nucleic
acid molecule comprising a nucleotide sequence encoding a heavy
chain variable region comprising the nucleotide sequence of SEQ ID
NO:9.
[0031] Another aspect of the invention features an isolated nucleic
acid molecule comprising a nucleotide sequence encoding a light
chain variable region comprising the nucleotide sequence of SEQ ID
NO:10.
[0032] Yet another aspect of the invention features an isolated
nucleic acid molecule comprising a nucleotide sequence encoding at
least one CDR selected from the group consisting of: SEQ ID NO:11,
SEQ ID NO:12, and SEQ ID NO:13. In one embodiment, the isolated
nucleic acid molecule comprises at least two CDRs. In another
embodiment, the isolated nucleic acid molecule comprises three
CDRs.
[0033] Another aspect of the invention features an isolated nucleic
acid molecule comprising a nucleotide sequence encoding at least
one CDR selected from the group consisting of: SEQ ID NO:14 SEQ ID
NO:15 and SEQ ID NO:16. In one embodiment, the isolated nucleic
acid molecule comprises at least two CDRs. In another embodiment,
the isolated nucleic acid molecule comprises three CDRs.
[0034] One aspect of the invention features an isolated nucleic
acid molecule comprising the nucleotide sequences shown in SEQ ID
NOs: 11-16.
[0035] One aspect of the invention features a recombinant
expression vector comprising the nucleic acid molecules of the
invention. In one embodiment, a recombinant expression vector
comprising a nucleic acid molecule having a nucleotide sequence
encoding the binding molecule of the invention is featured. In
another embodiment, the invention features a host cell into which
the recombinant expression vector of the invention has been
introduced. In another aspect the invention features a method for
producing a binding molecule that binds human ILT3, comprising
culturing the host cell of the invention in a culture medium until
a binding molecule that binds human ILT3 is produced by the
cell.
BRIEF DESCRIPTION OF THE DRAWINGS
[0036] FIG. 1 is a graph demonstrating that monocyte-derived
dendritic cells (MDDCs) differentiated in the presence of 9B11
exhibit a lower expression of cell surface co-stimulatory
molecules, such as CD86, CD80, CD83 and HLA-DR, as measured by flow
cytometry.
[0037] FIG. 2 is a graph demonstrating that MDDCs were unable to
generate an allogenic T cell response in a mixed lymphocyte
reaction.
[0038] FIGS. 3A-3E are graphs demonstrating that MDDCs cultured in
the presence of 9B11 are unable to produce IL-12, TNF.alpha. or
IL-1.alpha. when stimulated with LPS.
[0039] FIG. 4 is a graph demonstrating that freshly isolated blood
dendritic cells incubated with 9B11 were unable to fully upregulate
the expression of co-stimulatory molecules when a cocktail of
cytokines (IL-6, IL-1.beta., TNF.alpha., and PGE) are used to
mature the cells.
[0040] FIGS. 5A-5E show that addition of 9B11 to monocytes, induced
by activating an immunoreceptor tyrosine-based activation motif
(ITAM) in CD32, inhibits Ca+2 flux.
DETAILED DESCRIPTION OF THE INVENTION
[0041] The present invention provides binding molecules that
specifically bind to ILT3, e.g., human ILT3 (hILT3), on antigen
presenting cells, such as for example, monocytes, macrophages and
dendritic cells (DC), e.g., monocyte-derived dendritic cells
(MDDC). The binding molecules of the invention are characterized by
binding to hILT3 with high affinity and downmodulating immune
responses in vitro, e.g., downmodulating alloimmune responses; the
production of inflammatory cytokines by dendritic cells, e.g.,
monocyte-derived dendritic cells (MDDC); the upregulation of
costimulatory molecules by DC, e.g., MDDC; and/or calcium flux in
monocytes. In addition, the binding molecules upregulate the
expression of inhibitory receptors on dendritic cells, e.g.,
immature dendritic cells. Surprisingly, these same binding
molecules which downmodulate immune responses in vitro, are
immunostimulatory in vivo.
[0042] Various aspects of the invention relate to binding
molecules, and pharmaceutical compositions thereof. Methods of
using the binding molecules of the invention to detect human ILT3
or to modulate human ILT3 activity, either in vitro or in vivo, are
also encompassed by the invention.
[0043] In order that the present invention may be more readily
understood, certain terms are first defined.
I. DEFINITIONS
[0044] The term "immunoglobulin-like transcript 3" (abbreviated
herein as "ILT3" or "hILT3", and also known as CD85k), as used
herein, refers to the human member of the immunoglobulin
superfamily which is selectively expressed by myeloid antigen
presenting cells (APCs) such as monocytes, macrophages, and
dendritic cells, e.g., monocyte-derived dendritic cells
differentiated in the presence of IL-10 or vitamin D.sub.3. The
ILT3 protein is a transmembrane protein of 447 amino acids with a
predicted molecular mass of .about.47 kD. The amino terminal
portion of the ILT3 protein begins with a hydrophobic signal
peptide of 23 amino acids followed by an extracellular region
composed of two C2 type immunoglobulin superfamily domains. Each
domain shows two characteristic cysteines that are 49 and 50
residues apart from each other, flanked by conserved residues
(Val-x-Leu/Ile-x-Cys and His/Tyr-x-Gly-x-Tyr-x-Cys-Tyr/Phe,
respectively, where x is any amino acid). The putative
transmembrane domain of ILT3 consists of 21 amino acids, followed
by a long cytoplasmic region of 167 amino acids, which is
characterized by the presence of one Tyr-x-x-Val motif followed by
two Tyr-x-x-Leu motifs spaced by 26 amino acid residues. These
Tyr-x-x-Leu pairs and their spacing are reminiscent of the
Tyr-x-x-Leu motifs (also referred to as immunoreceptor
tyrosine-based inhibitory motifs or ITIMs) identified in KIRs
(natural-killer cell Ig receptors) as binding sites for protein
tyrosine phosphatase SHP-1.
[0045] The putative immunoreceptor tyrosine-based inhibitory motifs
in the cytoplasmic region of ILT3 suggest an inhibitory function of
ILT3. As such, ILT3 behaves as an inhibitory receptor when
cross-linked to a stimulatory receptor.
[0046] The nucleic acid sequence of human (hILT3) ILT3 is set forth
in SEQ ID NO:17 and the amino acid sequence is set forth in SEQ ID
NO:18.
[0047] The term "binding molecule" as used herein includes
molecules that contain at least one antigen binding site that
specifically binds to ILT3. By "specifically binds" it is meant
that the binding molecules exhibit essentially background binding
to non-ILT3 molecules. An isolated binding molecule that
specifically binds ILT3 may, however, have cross-reactivity to ILT3
molecules from other species.
[0048] The binding molecules of the invention may comprise an
immunoglobulin heavy chain of any isotype (e.g., IgG, IgE, IgM,
IgD, IgA, and IgY), class (e.g., IgG1, IgG2, IgG3, IgG4, IgA1 and
IgA2) or subclass of immunoglobulin molecule. Binding molecules may
have both a heavy and a light chain. As used herein, the term
binding molecule also includes, antibodies (including full length
antibodies), monoclonal antibodies (including full length
monoclonal antibodies), polyclonal antibodies, multispecific
antibodies (e.g., bispecific antibodies), human, humanized or
chimeric antibodies, and antibody fragments, e.g., Fab fragments,
F(ab') fragments, fragments produced by a Fab expression library,
epitope-binding fragments of any of the above, and engineered forms
of antibodies, e.g., scFv molecules, so long as they exhibit the
desired activity, e.g., binding to ILT3.
[0049] An "antigen" is an entity (e.g., a proteinaceous entity or
peptide) to which a binding molecule specifically binds.
[0050] The term "epitope" or "antigenic determinant" refers to a
site on an antigen to which a binding molecule specifically binds.
Epitopes can be formed both from contiguous amino acids or
noncontiguous amino acids juxtaposed by tertiary folding of a
protein. Epitopes formed from contiguous amino acids are typically
retained on exposure to denaturing solvents whereas epitopes
formed. by tertiary folding are typically lost on treatment with
denaturing solvents. An epitope typically includes at least 3, 4,
5, 6, 7, 8, 9, 10, 11, 12, 13, 14 or 15 amino acids in a unique
spatial conformation. Methods of determining spatial conformation
of epitopes include, for example, X-ray crystallography and
2-dimensional nuclear magnetic resonance. See, e.g., Epitope
Mapping Protocols in Methods in Molecular Biology, Vol. 66, G. E.
Morris, Ed. (1996).
[0051] Binding molecules that recognize the same epitope can be
identified in a simple immunoassay showing the ability of one
antibody to block the binding of another antibody to a target
antigen, i.e., a competitive binding assay. Competitive binding is
determined in an assay in which the binding molecule being tested
inhibits specific binding of a reference binding molecule to a
common antigen, such as ILT3. Numerous types of competitive binding
assays are known, for example: solid phase direct or indirect
radioimmunoassay (RIA); solid phase direct or indirect enzyme
immunoassay (EIA) sandwich competition assay (see Stahli et al.,
Methods in Enzymology 9:242 (1983)); solid phase direct
biotin-avidin EIA (see Kirkland et al., J. Immunol. 137:3614
(1986)); solid phase direct labeled assay, solid phase direct
labeled sandwich assay (see Harlow and Lane, Antibodies: A
Laboratory Manual, Cold Spring Harbor Press (1988)); solid phase
direct label RIA using I-125 label (see Morel et al., Mol. Immunol.
25(1):7 (1988)); solid phase direct biotin-avidin EIA (Cheung et
al., Virology 176:546 (1990)); and direct labeled RIA. (Moldenhauer
et al., Scand. J. Immunol. 32:77 (1990)). Typically, such an assay
involves the use of purified antigen bound to a solid surface or
cells bearing either of these, an unlabeled test binding molecule
and a labeled reference binding molecule. Competitive inhibition is
measured by determining the amount of label bound to the solid
surface or cells in the presence of the test binding molecule.
Usually the test binding molecule is present in excess. Usually,
when a competing binding molecule is present in excess, it will
inhibit specific binding of a reference binding molecule to a
common antigen by at least 50-55%, 55-60%, 60-65%, 65-70% 70-75% or
more.
[0052] An epitope is also recognized by immunologic cells, for
example, B cells and/or T cells. Cellular recognition of an epitope
can be determined by in vitro assays that measure antigen-dependent
proliferation, as determined by .sup.3H-thymidine incorporation, by
cytokine secretion, by antibody secretion, or by antigen-dependent
killing (cytotoxic T lymphocyte assay).
[0053] The term "monoclonal binding molecule" as used herein refers
to a binding molecule obtained from a population of substantially
homogeneous binding molecules. Monoclonal binding molecules are
highly specific, being directed against a single antigenic site.
Furthermore, in contrast to polyclonal binding molecule
preparations which typically include different binding molecules
directed against different determinants (epitopes), each monoclonal
binding molecule is directed against a single determinant on the
antigen. The modifier "monoclonal" indicates the character of the
binding molecule as being obtained from a substantially homogeneous
population of binding molecules, and is not to be construed as
requiring production of the binding molecule by any particular
method. For example, the monoclonal binding molecules to be used in
accordance with the present invention may be made by the hybridoma
method first described by Kohler, et al., Nature 256:495 (1975), or
may be made by recombinant DNA methods (see, e.g., U.S. Pat. No.
4,816,567). The "monoclonal binding molecules" may also be isolated
from phage antibody libraries using the techniques described in
Clackson, et al., Nature 352:624-628 (1991) and Marks et al., J.
Mol Biol. 222:581-597 (1991), for example.
[0054] The term "chimeric binding molecule" refers to a binding
molecule comprising amino acid sequences derived from different
species. Chimeric binding molecules can be constructed, for example
by genetic engineering, from binding molecule gene segments
belonging to different species.
[0055] The monoclonal binding molecules herein specifically include
"chimeric" binding molecules in which a portion of the heavy and/or
light chain is identical with or homologous to corresponding
sequences in binding molecules derived from a particular species or
belonging to a particular antibody class or subclass, while the
remainder of the chain(s) is identical with or homologous to
corresponding sequences in binding molecules derived from another
species or belonging to another antibody class or subclass, as well
as fragments of such binding molecules, so long as they exhibit the
desired biological activity (U.S. Pat. No. 4,816,567; and Morrison,
et al., Proc. Natl. Acad. Sci. USA 81:6851-6855 (1984)). e.g.,
binding to human ILT3 (hILT3).
[0056] Both the light and heavy chains are divided into regions of
structural and functional homology. The terms "constant" and
"variable" are used functionally. In this regard, it will be
appreciated that the variable domains of both the light (VL) and
heavy (VH) chain portions determine antigen recognition and
specificity. Conversely, the constant domains of the light chain
(CL) and the heavy chain (CH1, CH2 or CH3) confer important
biological properties such as secretion, transplacental mobility,
Fc receptor binding, complement binding, and the like. By
convention the numbering of the constant region domains increases
as they become more distal from the antigen binding site or
amino-terminus of the antibody. The N-terminus is a variable region
and at the C-terminus is a constant region; the CH3 and CL domains
actually comprise the carboxy-terminus of the heavy and light
chain, respectively.
[0057] A "variable region" when used in reference to a binding
molecule refers to the amino terminal portion of a binding molecule
which confers antigen binding onto the molecule and which is not
the constant region. The term includes complementarity determining
regions and framework regions. The term also includes functional
fragments thereof which maintain some or all of the binding
function of the whole variable region.
[0058] The term "hypervariable region" when used herein refers to
the regions of a binding molecule variable domain which are
hypervariable in sequence and/or form structurally defined loops.
The hypervariable region comprises amino acid residues from a
"complementarity determining region" or "CDR".
[0059] As used herein, the term "CDR" or "complementarity
determining region" means the noncontiguous antigen combining sites
found within the variable region of both heavy and light chain
polypeptides. These particular regions have been described by
Kabat, et al., J. Biol. Chem. 252, 6609-6616 (1977) and Kabat, et
al., Sequences of protein of immunological interest. (1991), and by
Chothia, et al., J. Mol. Biol. 196:901-917 (1987) and by MacCallum,
et al., J. Mol. Biol. 262:732-745 (1996) where the definitions
include overlapping or subsets of amino acid residues when compared
against each other. Preferably, the Kabat definition is used to
describe a CDR of a binding molecule of the invention.
Nevertheless, application of either definition to refer to a CDR of
a binding molecule or grafted binding molecule or variants thereof
is within the scope of the term as defined and used herein.
[0060] As used herein, the term "framework region" or "FR" means
each domain of the framework that is separated by the CDRs.
Therefore, a variable region framework is between about 100-120
amino acids in length but refers only those amino acids outside of
the CDRs.
[0061] "Humanized" forms of non-human (e.g., murine) binding
molecules are chimeric antibodies which contain minimal sequence
derived from non-human binding molecule. For the most part,
humanized binding molecules are human binding molecules
(acceptor/recipient binding molecule) in which residues from a
hyper-variable region are replaced by residues from a hypervariable
region of a non-human species (donor binding molecule) such as
mouse, rat, rabbit or nonhuman primate having the desired
specificity, affinity, and capacity. In some instances, Fv
framework region (FR) residues of the human binding molecule are
altered, e.g., replaced by, substituted, or backmutated to
corresponding non-human residues. Furthermore, humanized binding
molecules may comprise residues which are not found in the
recipient binding molecule or in the donor binding molecule. These
modifications are generally made to further refine binding molecule
performance. In general, the humanized binding molecule will
comprise substantially all of at least one, and typically two,
variable domains, in which all or substantially all of the
hypervariable loops correspond to those of a non-human binding
molecule and all or substantially all of the FR regions are those
of a human binding molecule sequence. The humanized binding
molecule optionally also will comprise at least a portion of a
binding molecule constant region (Fc), typically that of a human
binding molecule. For further details, see Jones, et al., Nature
321:522-525 (1986); Riechmann, et al., Nature 332:323-329 (1988);
and Presta, Curr. Op. Struct. Biol. 2:593-596 (1992).
[0062] Preferably, a binding molecule of the invention comprises at
least one CDR selected from the group consisting of SEQ ID NO:3
(GFAFSSYDMS (VH CDR1)), SEQ ID NO:4 (TISSSGSYTYYPDSVKG (VH CDR2)),
SEQ ID NO:5 (LWGAMDY (VH CDR3)), SEQ ID NO:6 (RASQGLTNDLH (VL
CDR1)), SEQ ID NO:7 (YASQSIS (VL CDR2)), and SEQ ID NO:8 (QQSNSWPFT
(VL CDR3)).
[0063] The term "engineered" or "recombinant" binding molecule, as
used herein includes binding molecules that are prepared,
expressed, created or isolated by recombinant means, such as
binding molecules expressed using a recombinant expression vector
transfected into a host cell, binding molecules isolated from a
recombinant, combinatorial binding molecule library, binding
molecules isolated from an animal (e.g., a mouse) that is
transgenic for human immunoglobulin genes (see e.g., Taylor, L. D.,
et al. (1992) Nucl. Acids Res. 20:6287-6295) or binding molecules
prepared, expressed, created or isolated by any other means that
involves splicing of human binding molecule gene sequences to other
DNA sequences. In certain embodiments, however, such recombinant
human binding molecules are subjected to in vitro mutagenesis (or,
when an animal transgenic for human Ig sequences is used, in vivo
somatic mutagenesis) and thus the amino acid sequences of the VH
and VL regions of the recombinant binding molecules are sequences
that, while derived from and related to human germline VH and VL
sequences, may not naturally exist within the human binding
molecule germline repertoire in vivo.
[0064] An "isolated binding molecule", as used herein, refers to a
binding molecule that is substantially free of other binding
molecules having different antigenic specificities (e.g., an
isolated binding molecule that specifically binds ILT3 is
substantially free of binding molecules that specifically bind
antigens other than ILT3). Moreover, an isolated binding molecule
may be substantially free of other cellular material and/or
chemicals. An "isolated" binding molecule is one which has been
identified and separated and/or recovered from a component of its
natural environment. Contaminant components of its natural
environment include, e.g., materials which would interfere with
diagnostic or therapeutic uses for the binding molecule, and may
include enzymes, hormones, and other proteinaceous or
nonproteinaceous solutes. In preferred embodiments, the binding
molecule will be purified (1) to greater than 95% by weight of
binding molecule as determined by the Lowry method, and most
preferably more than 99% by weight, (2) to a degree sufficient to
obtain at least 15 residues of N-terminal or internal amino acid
sequence by use of a spinning cup sequenator, or (3) to homogeneity
by SDS-PAGE under reducing or nonreducing conditions using
Coomassie blue or, preferably, silver stain. Isolated binding
molecules include binding molecules in situ within recombinant
cells since at least one component of the binding molecule's
natural environment will not be present. Ordinarily, however,
isolated binding molecules will be prepared by at least one
purification step.
[0065] As used herein the term "binding constant" "(kd)", also
referred to as "affinity constant", is a measure of the extent of a
reversible association between two molecular species includes both
the actual binding affinity as well as the apparent binding
affinity. The actual binding affinity is determined by calculating
the ratio of the Kassoc in "M.sup.-1S.sup.-1" to the Kdissoc in
S.sup.-1 and has the units "M.sup.-1". Therefore, conferring or
optimizing binding affinity includes altering either or both of
these components to achieve the desired level of binding affinity.
The apparent affinity can include, for example, the avidity of the
interaction. For example, a bivalent heteromeric variable region
binding fragment can exhibit altered or optimized binding affinity
due to its valency. Binding affinity can be determined by
measurement of surface plasmon resonance, e.g., using a BIAcore
system.
[0066] The term "nucleic acid molecule", as used herein, includes
DNA molecules and RNA molecules. A nucleic acid molecule may be
single-stranded or double-stranded, but preferably is
double-stranded DNA.
[0067] The term "isolated nucleic acid molecule", as used herein in
reference to nucleic acids encoding binding molecules that bind
ILT3, refers to a nucleic acid molecule in which the nucleotide
sequences encoding the binding molecule are free of other
nucleotide sequences which other sequences may naturally flank the
nucleic acid in human genomic DNA. These sequences may optionally
include 5' or 3'nucleotide sequences important for regulation or
protein stability.
[0068] The term "vector", as used herein, refers to a nucleic acid
molecule capable of transporting another nucleic acid to which it
has been linked. One type of vector is a "plasmid", which refers to
a circular double stranded DNA loop into which additional DNA
segments may be ligated. Another type of vector is a viral vector,
wherein additional DNA segments may be ligated into the viral
genome. Certain vectors are capable of autonomous replication in a
host cell into which they are introduced (e.g., bacterial vectors
having a bacterial origin of replication and episomal mammalian
vectors). Other vectors (e.g., non-episomal mammalian vectors) can
be integrated into the genome of a host cell upon introduction into
the host cell, and thereby are replicated along with the host
genome. Moreover, certain vectors are capable of directing the
expression of genes to which they are operatively linked. Such
vectors are referred to herein as "recombinant expression vectors"
(or simply, "expression vectors"). In general, expression vectors
of utility in recombinant DNA techniques are often in the form of
plasmids. In the present specification, "plasmid" and "vector" may
be used interchangeably as the plasmid is the most commonly used
form of vector. However, the invention includes such other forms of
expression vectors, such as viral vectors (e.g., replication
defective retroviruses, adenoviruses and adeno-associated viruses),
which serve equivalent functions.
[0069] The term "recombinant host cell" (or simply "host cell"), as
used herein, refers to a cell into which a recombinant expression
vector has been introduced. It should be understood that such terms
are intended to refer not only to the particular subject cell but
to the progeny of such a cell. Because certain modifications may
occur in succeeding generations due to either mutation or
environmental influences, such progeny may not, in fact, be
identical to the parent cell, but are still included within the
scope of the term "host cell" as used herein.
[0070] As used herein, the term "T cell" (i.e., T lymphocyte) is
includes cells within the T cell lineage, including thymocytes,
immature T cells, mature T cells and the like, from a mammal (e.g.,
human). Preferably, T cells are mature T cells that express either
CD4 or CD8, but not both, and a T cell receptor. The various T cell
populations described herein can be defined based on their cytokine
profiles and their function.
[0071] As used herein, a "professional antigen presenting cell" or
"APC" is a cell that can present antigen in a form in which it can
be recognized by cells. The cells that can "present" antigen
include B cells, monocytes, macrophages and dendritic cells.
[0072] As used herein, the term "dendritic cell" or "DC" includes
APCs capable of activating naive T cells and stimulating the growth
and differentiation of B cells. DCs are lineage negative cells,
i.e., they lack cell surface markers for T cells, B cells, NK
cells, and monocytes/macrophages, however they strongly express
various costimulatory molecules (e.g., CD86, CD80, CD83, and
HLA-DR) and/or adhesion molecules. Dendritic cells can be
subdivided into two main cell types, namely "myeloid-derived
dendritic cells" ("MDDC") and "plasmacytoid-derived dendritic
cells" ("PDDC"). Cell surface markers, such as ILT3, can be used to
distinguish the two dendritic cell lineages, as can the limited
proliferative ability of PDDC. See, for example, Santiago-Schwartz,
F. (2004) Rheum. Dis. Clin. North Am. 30:115-134, incorporated
herein by reference. Furthermore, DCs can also be divided into
"immature DCs" and "mature DCs". Immature DCs are specialized in
antigen capture and processing, whereas mature DCs present antigen
and have an increased T-cell stimulatory capacity. Immature DCs can
be matured using art recognized techniques, such as culturing in
the presence of an inflammatory cytokine cocktail.
[0073] As used herein, the term "naive T cells" includes T cells
that have not been exposed to cognate antigen and so are not
activated or memory cells. Naive T cells are not cycling and human
naive T cells are CD45RA+. If naive T cells recognize antigen and
receive additional signals depending upon but not limited to the
amount of antigen, route of administration and timing of
administration, they may proliferate and differentiate into various
subsets of T cells, e.g. effector T cells.
[0074] As used herein, the term "memory T cell" includes
lymphocytes which, after exposure to antigen, become functionally
quiescent and which are capable of surviving for long periods in
the absence of antigen. Human memory T cells are CD45RA-.
[0075] As used herein, the term "effector T cell" or "Teff cell"
includes T cells which function to eliminate antigen (e.g., by
producing cytokines which modulate the activation of other cells or
by cytotoxic activity). The term "effector T cell" includes T
helper cells (e.g., Th1 and Th2 cells) and cytotoxic T cells. Th1
cells mediate delayed type hypersensitivity (DTH) responses and
macrophage activation (e.g., cellular immune responses) while Th2
cells provide help to B cells and are critical in the allergic
response (e.g., humoral immune responses) (Mosmann and Coffman,
1989, Annu. Rev. Immunol. 7, 145-173; Paul and Seder, 1994, Cell
76, 241-251; Arthur and Mason, 1986, J. Exp. Med. 163, 774-786;
Paliard, et al., 1988, J. Immunol. 141, 849-855; Finkelman, et al.,
1988, J. Immunol. 141, 2335-2341).
[0076] As used herein, the term "T helper type 1 response" (Th1
response) refers to a response that is characterized by the
production of one or more cytokines selected from IFN-.gamma.,
IL-2, TNF, and lymphotoxin (LT) and other cytokines produced
preferentially or exclusively by Th1 cells rather than by Th2
cells. As used herein, a "T helper type 2 response" (Th2 response)
refers to a response by CD4+ T cells that is characterized by the
production of one or more cytokines selected from IL-4, IL-5, IL-6
and IL-10, and that is associated with efficient B cell "help"
provided by the Th2 cells (e.g., enhanced IgG1 and/or IgE
production).
[0077] As used herein, the term "regulatory T cell" or "Treg cell
"includes T cells which produce low levels of IL-2, IL-4, IL-5, and
IL-12. Regulatory T cells produce TNF.alpha., TGF.beta.,
IFN-.gamma., and IL-10, albeit at lower levels than effector T
cells. Although TGF.beta. is the predominant cytokine produced by
regulatory T cells, the cytokine is produced at levels less than or
equal to that produced by Th1 or Th2 cells, e.g., an order of
magnitude less than in Th1 or Th2 cells. Regulatory T cells can be
found in the CD4+CD25+ population of cells (see, e.g., Waldmann and
Cobbold. 2001. Immunity. 14:399). Regulatory T cells actively
suppress the proliferation and cytokine production of Th1, Th2, or
naive T cells which have been stimulated in culture with an
activating signal (e.g., antigen and antigen presenting cells or
with a signal that mimics antigen in the context of MHC, e.g.,
anti-CD3 antibody, plus anti-CD28 antibody).
[0078] As used herein, the term "anergy" or "tolerance" includes
refractivity to activating receptor-mediated stimulation. Such
refractivity is generally antigen-specific and persists after
exposure to the tolerizing antigen has ceased. For example,
tolerance is characterized by lack of cytokine production, e.g.,
IL-2. Tolerance occurs when cells are exposed to antigen and
receive a first signal (a T cell receptor or CD-3 mediated signal)
in the absence of a second signal (a costimulatory signal) or by
modulation, e.g., upmodulation of an inhibitory signal from an
inhibitory receptor, such as, for example, ILT3. Under these
conditions, reexposure of the cells to the same antigen (even if
reexposure occurs in the presence of a costimulatory polypeptide)
results in failure to produce cytokines and, thus, failure to
proliferate. For example, tolerance is characterized by lack of
cytokine production, e.g., IL-2, or can be assessed by use of a
mixed lymphocyte culture assay. Tolerance can occur to self
antigens or to foreign antigens.
[0079] As used herein, the term "inhibitory signal" refers to a
signal transmitted via an inhibitory receptor (e.g., ILT3), e.g.,
on an immune cell, such as a DC, e.g., MDDC. Such a signal
antagonizes a signal via an activating receptor (e.g., via a TCR,
CD3, BCR, or Fc polypeptide). Transduction of a signal via an
inhibitory receptor results in "downmodulation of immune cell
activation" in vitro. Transmission of a regulatory signal which can
result in, e.g., inhibition of second messenger generation; an
inhibition of proliferation; an inhibition of effector function in
the immune cell, e.g., reduced phagocytosis, reduced antibody
production, reduced cellular cytotoxicity, the failure of the
immune cell to produce mediators, (such as cytokines (e.g., IL-2)
and/or mediators of allergic responses); or the development of
tolerance.
[0080] In one embodiment, downmodulation of immune cell activation
in vitro downmodulates an alloimmune response. As used herein, an
"alloimune response" refers to an immune response that occurs
between antigenically distinct cells. An allommune response can be
measured utilizing a "mixed lymphocyte culture" or "mixed
lymphocyte reaction" ("MLC" or "MLR") which is a type of lymphocyte
proliferation test in which lymphocytes, i.e., resting lymphocytes,
i.e., lymphocytes that have not been stimulated, from two
individuals (a stimulator and a responder), i.e., allogenic
lymphocytes, are cultured together and the proliferative response
("mixed lymphocyte reaction") is measured by .sup.3H-labeled
thymidine uptake and/or cytokine production. In one embodiment, the
MLC is a primary MLC, i.e., responder cells are mixed with
stimulator cells at, which may or may not have been inactivated by,
e.g., gamma irradiation and cultured for, e.g., 3 days. In another
embodiment, the MLC is a secondary MLC, i.e., responder cells are
initially cultured in a primary MLC with stimulator cells which may
or may not have been inactivated by, e.g., gamma irradiation at,
and subsequently viable cells are recovered and to restimulated
with new stimulators cells, which may or may not have been
inactivated by, e.g., gamma irradiation, and cultured for an
additional, e.g., 3, 4, 5, 6, 7 days.
[0081] In another embodiment, downmodulation of immune cell
activation results in downmodulation of the expression of
costimulatory molecules on a cell, e.g., a dendritic cell, or a
dampening in an increase in costimulatory molecule expression. In
yet another embodiment, downmodulation of immune cell activation in
vitro results in downmodulation of intracellular calcium flux.
[0082] In one embodiment, the activation state of MDDC is
downmodulated in vitro. In one embodiment, MDDC are derived from
monocytes cultured in the presence of, e.g., GM-CSF and IL-4 added
on, e.g., days zero and three. In one embodiment, MDDC are derived
from monocytes cultured in the presence of a binding molecule of
the invention added on, e.g., days zero and three. In another
embodiment the activation state of mature dendritic cells is
downmodulated. In one embodiment, mature dendritic cells are
derived from blood dendritic cells cultured in the presence of,
e.g., IL-6, IL-1 beta, TNF-alpha, and PGE added on, e.g., day one.
In another embodiment the activation state of monocytes is
downmodulated.
[0083] As used herein "upmodulation of an immune response" refers
to an increase in a T cell mediated and/or B cell mediated immune
response in vivo. Exemplary immune responses include T cell
responses, e.g., cytokine production, and cellular cytotoxicity. In
addition, the term immune response includes antibody production
(humoral responses) and activation of cells of the innate immune
system, e.g., cytokine responsive cells such as macrophages.
[0084] As used herein, the various forms of the term "modulate"
include stimulation (e.g., increasing, upmodulating, or
upregulating a particular response or activity) and inhibition
(e.g., decreasing, downmodulating, or downregulating a particular
response or activity).
[0085] "Treatment" refers to both therapeutic treatment and
prophylactic or preventative measures. Those in need of treatment
may include those already having a disorder as well as those which
do not yet have a disorder.
[0086] A "disorder" is any condition that would benefit from
treatment with the binding molecules of the present invention. This
includes chronic and acute disorders or diseases or pathological
conditions associated with immune responses that are too high or
too low.
[0087] Various aspects of the invention are described in further
detail in the following subsections.
II. ILT3 BINDING MOLECULES
[0088] The present invention provides isolated ILT3 binding
molecules.
[0089] Exemplary binding molecules of the present invention include
the 9B11 antibody, or a binding portion thereof. The 9B11 antibody
is an anti-ILT3 antibody that binds to ILT3 on APC, e.g.,
monocytes, macrophages, dendritic cells, e.g., MDDC, e.g., human
cells, with high affinity. The binding molecules of the invention
are characterized by binding to hILT3 with high affinity and
downmodulating immune responses in vitro, e.g., downmodulating
alloimmune responses; the production of inflammatory cytokines by
dendritic cells, e.g., monocyte-derived dendritic cells (MDDC); the
upregulation of costimulatory molecules by DC, e.g., MDDC; and/or
calcium flux in monocytes. In addition, the binding molecules
upregulate the expression of inhibitory receptors on dendritic
cells, e.g., immature dendritic cells. Surprisingly, these same
binding molecules which downmodulate immune responses in vitro, are
immunostimulatory in vivo. For example, the binding molecules
stimulate immune responses in vivo such as cellular immune
responses, e.g., DTH responses. A preferred binding molecule of the
invention has VL and VH sequences as shown in FIGS. 8A-8D; the
amino acid sequence of the 9B11 VH region is also shown in SEQ ID
NO: 1; the amino acid sequence of the 9B11 VL region is shown in
SEQ ID NO:2.
[0090] In one aspect, the invention pertains to 9B11 binding
molecules and other binding molecules with equivalent properties to
9B11, such as binding to hILT3 with high affinity and downmodulate
immune cell activation in vitro, e.g., downmodulate alloimmune
responses; the production of inflammatory cytokines by dendritic
cells, e.g., monocyte-derived dendritic cells (MDDC); the
upregulation of costimulatory molecules by DC, e.g., MDDC; and/or
calcium flux in monocytes; and upregulate the expression of
inhibitory receptors on dendritic cells, e.g., immature dendritic
cells and stimulating immune response in vivo, such as a Th1 immune
responses. Accordingly, equivalent binding molecules of the
invention e.g., generate a negative signal in a cell via ILT3 or
block generation of a stimulatory signal via an activating receptor
in vitro, while they are immunostimulatory in vivo, e.g., they
sequester or downmodulate ILT3 to prevent its association with an
activating receptor, thereby preventing the downmodulation of an
immune response.
[0091] In one embodiment, the invention provides an isolated human
binding molecule with a light chain variable region (VL) comprising
the amino acid sequence of SEQ ID NO: 2 and a heavy chain variable
region (VH) comprising the amino acid sequence of SEQ ID NO: 1. It
will be understood that although some of the sequences of binding
molecules described herein include leader sequences, a binding
molecule of the invention may also exclude the leader sequence,
which is optional. For example, in one embodiment, a binding
molecule of the invention comprises the amino acid sequence of the
mature protein shown in SEQ ID NO:1. e.g., amino acids 20-135 of
SEQ ID NO:1.
[0092] In certain embodiments of the invention, the binding
molecules of the invention comprise a heavy chain constant region,
such as an IgG1, IgG2, IgG3, IgG4, lgA, IgE, IgM or IgD constant
region. In one embodiment, the heavy chain constant region
comprises a glycosylation site, e.g., an asparagine at amino acid
position 180 of SEQ ID NO:28. In another embodiment, the heavy
chain constant region does not comprise a glycosylation site, e.g.,
an alanine at amino acid position 180 of SEQ ID NO:29. In one
embodiment, the heavy chain constant region comprises the amino
acid sequence set forth in SEQ ID NO:28. In another embodiment, the
heavy chain constant region comprises the amino acid sequence set
forth in SEQ ID NO:29.
[0093] Furthermore, the binding molecule can comprise a light chain
constant region, either a kappa light chain constant region or a
lambda light chain constant region. Preferably, the binding
molecule comprises a kappa light chain constant region.
[0094] In one embodiment, the a CL domain of a binding molecule of
the invention comprises the amino acid sequence set forth in SEQ ID
NO:23. (Murine IgG2a light chain constant region).
[0095] In one embodiment, the a CH domain of a binding molecule of
the invention comprises the amino acid sequence set forth in SEQ ID
NO:24. (Murine IgG2a heavy chain constant region).
[0096] In one embodiment of the invention the VL chain comprises a
leader and/or signal sequence, e.g., amino acid residues 1-20 of
SEQ ID NO:2. In one embodiment, the VH chain comprises a leader
and/or signal sequence, e.g., amino acid residues 1-19 of SEQ ID
NO:1. In another embodiment, a binding molecule of the invention
does not comprise a leader and/or signal sequence.
[0097] In one embodiment, a binding molecule of the invention
comprises a heavy chain constant region as set forth in SEQ ID
NO:28. In one embodiment, a binding molecule of the invention
comprises a heavy chain constant region as set forth in SEQ ID
NO:29. In one embodiment, a binding molecule of the invention
comprises a light chain constant region as set forth in SEQ ID
NO:30.
[0098] In another embodiment, the invention provides a binding
molecule having 9B11-related VL CDR domains, for example, a binding
molecule with a light chain variable region (VL) having at least
one CDR domain comprising an amino acid sequence selected from the
group consisting of SEQ ID NO: 6, SEQ ID NO: 7, and SEQ ID NO: 8.
In another embodiment, a light chain variable region (VL) has at
least two CDR domains comprising an amino acid sequence selected
from the group consisting of SEQ ID NO: 6, SEQ ID NO: 7, and SEQ ID
NO: 8. In yet another embodiment, a light chain variable region
(VL) has CDR domains comprising the amino acid sequences consisting
of SEQ ID NO: 6, SEQ ID NO: 7; and SEQ ID NO: 8.
[0099] In still other embodiments, the invention provides a binding
molecule having 9B11-related VH CDR domain, for example, a binding
molecule with a heavy chain variable region (VH) having at least
one CDR domain comprising an amino acid sequence selected from the
group consisting of SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 5.
In another embodiment, a heavy chain variable region (VH) has at
least two CDR domains comprising an amino acid sequence selected
from the group consisting of SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID
NO: 5. In yet another embodiment, a heavy chain variable region
(VH) has CDR domains comprising the amino acid sequences consisting
of SEQ ID NO: 3, SEQ ID NO: 4, and SEQ ID NO: 5.
[0100] A binding molecule of the invention can be derivatized or
linked to another functional molecule (e.g., another peptide or
protein). Accordingly, the binding molecules of the invention
include derivatized and otherwise modified forms of the anti-ILT3
binding molecules described herein, including immunoadhesion
molecules. For example, a binding molecule of the invention can be
functionally linked (by chemical coupling, genetic fusion,
noncovalent association or otherwise) to one or more other
molecular entities, such as another binding molecule (e.g., to form
a bispecific antibody or a diabody), a detectable agent, a
cytotoxic agent, a pharmaceutical agent, and/or a protein or
peptide that can mediate associate of the binding molecule with
another molecule (such as a streptavidin core region or a
polyhistidine tag).
[0101] One type of derivatized binding molecule is produced by
crosslinking two or more binding molecules (of the same type or of
different types, e.g., to create bispecific antibodies). Suitable
crosslinkers include those that are heterobifunctional, having two
distinctly reactive groups separated by an appropriate spacer
(e.g., m-maleimidobenzoyl-N-hydroxysuccinimide ester) or
homobifunctional (e.g., disuccinimidyl suberate). Such linkers are
available from Pierce Chemical Company, Rockford, Ill.
[0102] Useful detectable agents with which a binding molecule of
the invention may be derivatized include fluorescent compounds.
Exemplary fluorescent detectable agents include fluorescein,
fluorescein isothiocyanate, rhodamine,
5-dimethylamine-1-napthalenesulfonyl chloride, phycoerythrin and
the like. A binding molecule may also be derivatized with
detectable enzymes, such as alkaline phosphatase, horseradish
peroxidase, glucose oxidase and the like. When a binding molecule
is derivatized with a detectable enzyme, it is detected by adding
additional reagents that the enzyme uses to produce a detectable
reaction product. For example, when the detectable agent
horseradish peroxidase is present, the addition of hydrogen
peroxide and diaminobenzidine leads to a colored reaction product,
which is detectable. A binding molecule may also be derivatized
with biotin, and detected through indirect measurement of avidin or
streptavidin binding.
III. PRODUCTION OF BINDING MOLECULES
[0103] The present invention features binding molecules having
specificity for ILT3, e.g., human ILT3. Such binding molecules can
be used in formulating various therapeutic compositions of the
invention or, preferably, provide complementarity determining
regions for the production of humanized or chimeric binding
molecules (described in detail below). The production of non-human
binding molecules, e.g., monoclonal binding molecules, e.g.,
monoclonal antibodies, e.g., murine, guinea pig, primate, rabbit or
rat, can be accomplished by, for example, by immunizing the animal
with a nucleic acid molecule encoding hILT3. For example,
antibodies that bind ILT3 can be made by immunizing animals with
ILT3 or a portion thereof or placing the gene encoding human ILT3
in an expression vector and immunizing animals with the vector. A
longer polypeptide comprising ILT3 or an immunogenic fragment of
ILT3 or anti-idiotypic binding molecules of ILT3 can also be used.
(see, for example, Harlow & Lane, supra, in corporated by
reference for all purposes). Such an immunogen can be obtained from
a natural source, by peptide synthesis or by recombinant
expression. Optionally, the immunogen can be administered fused or
otherwise complexed with a carrier protein, as described below.
Optionally, the immunogen can be administered with an adjuvant. The
term "adjuvant" refers to a compound that augments, stimulate,
activate, potentiate, or upmodulates the immune response at either
the cellular or humoral level. The classical agents (Freund's
adjuvant, BCG, Corynebacterium parvum, etc.) contain bacterial
antigens. Adjuvants can augment an immune response by several
mechanisms including lymphocyte recruitment, stimulation of B
and/or T cells, and stimulation of macrophages. Several types of
adjuvant can be used as described below. Alternative adjuvants
include, for example, Hunter's Titermax, Gerbu Adjuvant, and Ribi's
Adjuvants.
[0104] Rabbits or guinea pigs are typically used for making
polyclonal binding molecules, e.g., polyclonal antibodies.
Exemplary preparation of polyclonal binding molecules, e.g., for
passive protection, can be performed as follows. Animals are
immunized with 100 .mu.g ILT3, plus adjuvant, and euthanized at 4-5
months. Blood is collected and lgG is separated from other blood
components. Binding molecules specific for the immunogen may be
partially purified by affinity chromatography. An average of about
0.5-1.0 mg of immunogen-specific binding molecule is obtained per
animal, giving a total of 60-120 mg.
[0105] Mice are typically used for making monoclonal binding
molecules. Monoclonals can be prepared against a fragment by
injecting the fragment or longer form of ILT3 into a mouse,
preparing hybridomas and screening the hybridomas for a binding
molecule that specifically binds to ILT3. Optionally, binding
molecules are screened for binding to a specific region or desired
fragment of ILT3 without binding to other nonoverlapping fragments
of ILT3. The latter screening can be accomplished by determining
binding of a binding molecule to a collection of deletion mutants
of an ILT3 peptide and determining which deletion mutants bind to
the binding molecules. Binding can be assessed, for example, by
Western blot or ELISA. The smallest fragment to show specific
binding to the binding molecules defines the epitope of the binding
molecules. Alternatively, epitope specificity can be determined by
a competition assay in which a test and reference binding molecules
compete for binding to ILT3. If the test and reference binding
molecules compete, then they bind to the same epitope (or epitopes
sufficiently proximal) such that binding of one binding molecule
interferes with binding of the other. The preferred isotype for
such binding molecules is mouse isotype IgG2a or equivalent isotype
in other species. Mouse isotype lgG2a is the equivalent of human
isotype IgG1.
[0106] The present invention also features chimeric and/or
humanized binding molecules (i.e., chimeric and/or humanized
immunoglobulins) specific for ILT3. Chimeric and/or humanized
binding molecules have the same or similar binding specificity and
affinity as a mouse or other nonhuman binding molecules that
provides the starting material for construction of a chimeric or
humanized binding molecule.
[0107] A chimeric binding molecule is one whose light and heavy
chain genes have been constructed, typically by genetic
engineering, from immunoglobulin gene segments belonging to
different species. For example, the variable (V) segments of the
genes from a mouse monoclonal binding molecule may be joined to
human constant (C) segments, such as IgG1 and lgG4. Human isotype
lgG1 is preferred. A typical chimeric binding molecule is thus a
hybrid protein consisting of the V or antigen-binding domain from a
mouse binding molecule and the C or effector domain from a human
binding molecule.
[0108] The term "humanized binding molecule" refers to a binding
molecule comprising at least one chain comprising variable region
framework residues substantially from a human binding molecule
chain (referred to as the acceptor immunoglobulin or binding
molecule) and at least one complementarity determining region
substantially from a mouse binding molecule, (referred to as the
donor immunoglobulin or binding molecule). See, Queen et al., Proc.
Natl. Acad. Sci. USA 86:10029-10033 (1989), U.S. Pat. No.
5,530,101, U.S. Pat. No. 5,585,089, U.S. Pat. No. 5,693,761, U.S.
Pat. No. 5,693,762, Selick et al., WO 90/07861, and Winter, U.S.
Pat. No. 5,225,539 (incorporated by reference in their entirety for
all purposes). The constant region(s), if present, are also
substantially or entirely from a human immunoglobulin.
[0109] The substitution of mouse CDRs into a human variable domain
framework is most likely to result in retention of their correct
spatial orientation if the human variable domain framework adopts
the same or similar conformation to the mouse variable framework
from which the CDRs originated. This is achieved by obtaining the
human variable domains from human binding molecules whose framework
sequences exhibit a high degree of sequence identity with the
murine variable framework domains from which the CDRs were derived.
The heavy and light chain variable framework regions can be derived
from the same or different human binding molecule sequences. The
human binding molecule sequences can be the sequences of naturally
occurring human binding molecules or can be consensus sequences of
several human binding molecules. See Kettleborough et al., Protein
Engineering 4:773 (1991); Kolbinger et al., Protein Engineering
6:971 (1993) and Carter et al., WO 92/22653.
[0110] Having identified the complementarity determining regions of
the murine donor immunoglobulin and appropriate human acceptor
immunoglobulins, the next step is to determine which, if any,
residues from these components should be substituted to optimize
the properties of the resulting humanized binding molecule. In
general, substitution of human amino acid residues with murine is
preferably minimized, because introduction of murine residues
increases the risk of the binding molecule eliciting a
human-anti-mouse-antibody (HAMA) response in humans. Art-recognized
methods of determining immune response can be performed to monitor
a HAMA response in a particular patient or during clinical trials.
Patients administered humanized binding molecules can be given an
immunogenicity assessment at the beginning and throughout the
administration of said therapy. The HAMA response is measured, for
example, by detecting antibodies to the humanized therapeutic
reagent, in serum samples from the patient using a method known to
one in the art, including surface plasmon resonance technology
(BIACORE) and/or solid-phase ELISA analysis.
[0111] Certain amino acids from the human variable region framework
residues are selected for substitution based on their possible
influence on CDR conformation and/or binding to antigen. The
unnatural juxtaposition of murine CDR regions with human variable
framework region can result in unnatural conformational restraints,
which, unless corrected by substitution of certain amino acid
residues, leads to loss of binding affinity.
[0112] The selection of amino acid residues for substitution can be
determined, in part, by computer modeling. In general, molecular
models are produced starting from solved structures for
immunoglobulin chains or domains thereof. The chains to be modeled
are compared for amino acid sequence similarity with chains or
domains of solved three-dimensional structures, and the chains or
domains showing the greatest sequence similarity is/are selected as
starting points for construction of the molecular model. Chains or
domains sharing at least 50% sequence identity are selected for
modeling, and preferably those sharing at least 60%, 70%, 80%, 90%
sequence identity or more are selected for modeling. The solved
starting structures are modified to allow for differences between
the actual amino acids in the immunoglobulin chains or domains
being modeled, and those in the starting structure. The modified
structures are then assembled into a composite immunoglobulin.
Finally, the model is refined by energy minimization and by
verifying that all atoms are within appropriate distances from one
another and that bond lengths and angles are within chemically
acceptable limits.
[0113] The selection of amino acid residues for substitution can
also be determined, in part, by examination of the characteristics
of the amino acids at particular locations, or empirical
observation of the effects of substitution or mutagenesis
ofparticular amino acids. For example, when an amino acid differs
between a murine variable region framework residue and a selected
human variable region framework residue, the human framework amino
acid should usually be substituted by the equivalent framework
amino acid from the mouse binding molecule when it is reasonably
expected that the amino acid: (1) noncovalently binds antigen
directly, (2) is adjacent to a CDR region, (3) otherwise interacts
with a CDR region (e.g., is within about 3-6 .ANG. of a CDR region
as determined by computer modeling), or (4) participates in the
VL-VH interface.
[0114] Residues which "noncovalently bind antigen directly" include
amino acids in positions in framework regions which have a good
probability of directly interacting with amino acids on the antigen
according to established chemical forces, for example, by hydrogen
bonding, Vander Waals forces, hydrophobic interactions, and the
like.
[0115] CDR and framework regions are as defined by Kabat et al. or
Chothia et al., supra. When framework residues, as defined by Kabat
et al., supra, constitute structural loop residues as defined by
Chothia et al., supra, the amino acids present in the mouse binding
molecule may be selected for substitution into the humanized
binding molecule. Residues which are "adjacent to a CDR region"
include amino acid residues in positions immediately adjacent to
one or more of the CDRs in the primary sequence of the humanized
immunoglobulin chain, for example, in positions immediately
adjacent to a CDR as defined by Kabat, or a CDR as defined by
Chothia (See e.g., Chothia and Lesk J M B 196:901 (1987)). These
amino acids are particularly likely to interact with the amino
acids in the CDRs and, if chosen from the acceptor, to distort the
donor CDRs and reduce affinity. Moreover, the adjacent amino acids
may interact directly with the antigen (Amit et al., Science,
233:747 (1986), which is incorporated herein by reference) and
selecting these amino acids from the donor may be desirable to keep
all the antigen contacts that provide affinity in the original
qinding molecule.
[0116] Residues that "otherwise interact with a CDR region" include
those that are determined by secondary structural analysis to be in
a spatial orientation sufficient to effect a CDR region. In one
embodiment, residues that "otherwise interact with a CDR region"
are identified by analyzing a three-dimensional model of the donor
immunoglobulin (e.g., a computer-generated model). A
three-dimensional model, typically of the original donor binding
molecule, shows that certain amino acids outside of the CDRs are
close to the CDRs and have a good probability of interacting with
amino acids in the CDRs by hydrogen bonding, Vander Waals forces,
hydrophobic interactions, etc. At those amino acid positions, the
donor immunoglobulin amino acid rather than the acceptor
immunoglobulin amino acid may be selected. Amino acids according to
this criterion will generally have a side chain atom within about 3
.ANG. of some atom in the CDRs and must contain an atom that could
interact with the CDR atoms according to established chemical
forces, such as those listed above.
[0117] In the case of atoms that may form a hydrogen bond, the 3
.ANG. is measured between their nuclei, but for atoms that do not
form a bond, the 3 .ANG. is measured between their Van der Waals
surfaces. Hence, in the latter case, the nuclei must be within
about 6 .ANG. (3 .ANG. plus the sum of the Vander Waals radii) for
the atoms to be considered capable of interacting. In many cases
the nuclei will be from 4 or 5 to 6 .ANG. apart. In determining
whether an amino acid can interact with the CDRs, it is preferred
not to consider the last 8 amino acids of heavy chain CDR 2 as part
of the CDRs, because from the viewpoint of structure, these 8 amino
acids behave more as part of the framework.
[0118] Amino acids that are capable of interacting with amino acids
in the CDRs, may be identified in yet another way. The solvent
accessible surface area of each framework amino acid is calculated
in two ways: (1) in the intact binding molecule, and (2) in a
hypothetical molecule consisting of the binding molecule with its
CDRs removed. A significant difference between these numbers of
about 10 square angstroms or more shows that access of the
framework amino acid to solvent is at least partly blocked by the
CDRs, and therefore that the amino acid is making contact with the
CDRs. Solvent accessible surface area of an amino acid may be
calculated based on a three-dimensional model of a binding
molecule, using algorithms known in the art (e.g., Connolly, J.
Appl. Cryst. 16:548 (1983) and Lee and Richards, J. Mol. Biol.
55:379 (1971), both of which are incorporated herein by reference).
Framework amino acids may also occasionally interact with the CDRs
indirectly, by affecting the conformation of another framework
amino acid that in turn contacts the CDRs.
[0119] The amino acids at several positions in the framework are
known to be capable of interacting with the CDRs in many binding
molecules (Chothia and Lesk, supra, Chothia et al., supra and
Tramontano et al., J. Mol. Biol. 215:175 (1990), all of which are
incorporated herein by reference). Notably, the amino acids at
positions 2, 48, 64 and 71 of the light chain and 26-30, 71 and 94
of the heavy chain (numbering according to Kabat) are known to be
capable of interacting with the CDRs in many binding molecules. The
amino acids at positions 35 in the light chain and 93 and 103 in
the heavy chain are also likely to interact with the CDRs. At all
these numbered positions, choice of the donor amino acid rather
than the acceptor amino acid (when they differ) to be in the
humanized immunoglobulin is preferred. On the other hand, certain
residues capable of interacting with the CDR region, such as the
first 5 amino acids of the light chain, may sometimes be chosen
from the acceptor immunoglobulin without loss of affinity in the
humanized binding molecule.
[0120] Residues which "participate in the VL-VH interface" or
"packing residues" include those residues at the interface between
VL and VH as defined, for example, by Novotny and Haber, Proc.
Natl. Acad. Sci. USA, 82:4592-66 (1985) or Chothia et al, supra.
Generally, unusual packing residues should be retained in the
humanized binding molecule if they differ from those in the human
frameworks.
[0121] In general, one or more of the amino acids fulfilling the
above criteria is substituted. In some embodiments, all or most of
the amino acids fulfilling the above criteria are substituted.
Occasionally, there is some ambiguity about whether a particular
amino acid meets the above criteria, and alternative variant
immunoglobulins are produced, one of which has that particular
substitution, the other of which does not. Alternative variant
immunoglobulins so produced can be tested in any of the assays
described herein for the desired activity, and the preferred
immunoglobulin selected.
[0122] Usually the CDR regions in humanized binding molecules are
substantially identical, and more usually, identical to the
corresponding CDR regions of the donor binding molecule. Although
not usually desirable, it is sometimes possible to make one or more
conservative amino acid substitutions of CDR residues without
appreciably affecting the binding affinity of the resulting
humanized binding molecule. By conservative substitutions is
intended combinations such as gly, ala; val, ile, leu; asp, glu;
asn, gln; ser, thr; lys, arg; and phe, tyr.
[0123] Additional candidates for substitution are acceptor human
framework amino acids that are unusual or "`rare" for a human
immunoglobulin at that position. These amino acids can be
substituted with amino acids from the equivalent position of is the
mouse donor binding molecule or from the equivalent positions of
more typical human immunoglobulins. For example, substitution may
be desirable when the amino acid in a human framework region of the
acceptor immunoglobulin is rare for that position and the
corresponding amino acid in the donor immunoglobulin is common for
that position in human immunoglobulin sequences; or when the amino
acid in the acceptor immunoglobulin is rare for that position and
the corresponding amino acid in the donor immunoglobulin is also
rare, relative to other human sequences. These criterion help
ensure that an atypical amino acid in the human framework does not
disrupt the binding molecule structure. Moreover, by replacing an
unusual human acceptor amino acid with an amino acid from the donor
binding molecule that happens to be typical for human binding
molecules, the humanized binding molecule may be made less
immunogenic.
[0124] The term "rare", as used herein, indicates an amino acid
occurring at that position in less than about 20% but usually less
than about 10% of sequences in a representative sample of
sequences, and the term "common", as used herein, indicates an
amino acid occurring in more than about 25% but usually more than
about 50% of sequences in a representative sample. For example, all
human light and heavy chain variable region sequences are
respectively grouped into "subgroups" of sequences that are
especially homologous to each other and have the same amino acids
at certain critical positions (Kabat et al., supra). When deciding
whether an amino acid in a human acceptor sequence is "rare" or
"common" among human sequences, it will often be preferable to
consider only those human sequences in the same subgroup as the
acceptor sequence.
[0125] Additional candidates for substitution are acceptor human
framework amino acids that would be identified as part of a CDR
region under the alternative definition proposed by Chothia et al.,
supra. Additional candidates for substitution are acceptor human
framework amino acids that would be identified as part of a CDR
region under the AbM and/or contact definitions. Notably, CDR1 in
the variable heavy chain is defined as including residues
26-32.
[0126] Additional candidates for substitution are acceptor
framework residues that correspond to a rare or unusual donor
framework residue. Rare or unusual donor framework residues are
those that are rare or unusual (as defined herein) for murine to
binding molecules at that position. For murine binding molecules,
the subgroup can be determined according to Kabat and residue
positions identified which differ from the consensus. These donor
specific differences may point to somatic mutations in the murine
sequence which enhance activity. Unusual residues that are
predicted to affect binding are retained, whereas residues
predicted to be unimportant for binding can be substituted.
[0127] Additional candidates for substitution are non-germline
residues occurring in an acceptor framework region. For example,
when an acceptor binding molecule chain (i.e., a human binding
molecule chain sharing significant sequence identity with the donor
binding molecule chain) is aligned to a germline binding molecule
chain (likewise sharing significant sequence identity with the
donor chain), residues not matching between acceptor chain
framework and the germline chain framework can be substituted with
corresponding residues from the germline sequence.
[0128] Other than the specific amino acid substitutions discussed
above, the framework regions of humanized binding molecules are
usually substantially identical, and more usually, identical to the
framework regions of the human binding molecules from which they
were derived. Of course, many of the amino acids in the framework
region make little or no direct contribution to the specificity or
affinity of a binding molecule. Thus, many individual conservative
substitutions of framework residues can be tolerated without
appreciable change of the specificity or affinity of the resulting
humanized binding molecule. Thus, in one embodiment the variable
framework region of the humanized binding molecule shares at least
85% sequence identity to a human variable framework region sequence
or consensus of such sequences. In another embodiment, the variable
framework region of the humanized binding molecule shares at least
90%, preferably 95%, more preferably 96%, 97%, 98% or 99% sequence
identity to a human variable framework region sequence or consensus
of such sequences. In general, however, such substitutions are
undesirable.
[0129] The humanized binding molecules preferably exhibit a
specific binding affinity for antigen of at least 10.sup.7,
10.sup.8, 10.sup.9 or 10.sup.10 M.sup.-1. Usually the upper limit
of binding affinity of the humanized binding molecules for antigen
is within a factor of three, four or five of that of the donor
binding molecule. Often the lower limit of binding affinity is also
within a factor of three, four or five of that of donor binding
molecule. Alternatively, the binding affinity can be compared to
that of a humanized binding molecule having no substitutions (e.g.,
a binding molecule having donor CDRs and acceptor FRs, but no FR
substitutions). In such instances, the binding of the optimized
binding molecule (with substitutions) is preferably at least two-
to three-fold greater, or three- to four-fold greater, than that of
the unsubstituted binding molecule. For making comparisons,
activity of the various binding molecules can be determined, for
example, by BIACORE (i.e., surface plasmon resonance using
unlabelled reagents) or competitive binding assays.
[0130] Having conceptually selected the CDR and framework
components of humanized binding molecules, a variety of methods are
available for producing such binding molecules. Because of the
degeneracy of the code, a variety of nucleic acid sequences will
encode each binding molecules amino acid sequence. The desired
nucleic acid sequences can be produced by de novo solid-phase DNA
synthesis or by PCR mutagenesis of an earlier prepared variant of
the desired polynucleotide. Oligonucleotide-mediated mutagenesis is
a preferred method for preparing substitution, deletion and
insertion variants of target polypeptide DNA. See Adelman et al.,
DNA 2:183 (1983). Briefly, the target polypeptide DNA is altered by
hybridizing an oligonucleotide encoding the desired mutation to a
single-stranded DNA template. After hybridization, a DNA polymerase
is used to synthesize an entire second complementary strand of the
template that incorporates the oligonucleotide primer, and encodes
the selected alteration in the target polypeptide DNA.
[0131] The variable segments of binding molecules produced as
described supra (e.g., the heavy and light chain variable regions
of chimeric, humanized, or human binding molecules) are typically
linked to at least a portion of an immunoglobulin constant region
(Fc), typically that of a human immunoglobulin. Human constant
region DNA sequences can be isolated in accordance with well known
procedures from a variety of human cells, but preferably
immortalized B cells (see Kabat et al., supra, and Liu et al.,
WO87/02671) (each of which is incorporated by reference in its
entirety for all purposes). Ordinarily, the binding molecule will
contain both light chain and heavy chain constant regions. The
heavy chain constant region usually includes CH1, hinge, CH2, CH3,
and CH4 regions. The binding molecules described herein include
antibodies having all types of constant regions, including IgM,
IgG, IgD, IgA and lgE, and any isotype, including IgG1, IgG2, IgG3
and IgG4. The choice of constant region depends, in part, or
whether binding molecule-dependent complement and/or cellular
mediated toxicity is desired. For example, isotopes lgG1 and lgG3
have complement activity and isotypes IgG2 and IgG4 do not. When it
is desired that the binding molecule (e.g., humanized binding
molecule) exhibit cytotoxic activity, the constant domain is
usually a complement fixing constant domain and the class is
typically IgG1. When such cytotoxic activity is not desirable, the
constant domain may be, e.g., of the lgG2 class. Choice of isotype
can also affect passage of antibody into the brain. Human isotype
IgG1 is preferred. Light chain constant regions can be lambda or
kappa. The humanized binding molecule may comprise sequences from
more than one class or isotype. Binding molecules can be expressed
as tetramers containing two light and two heavy chains, as separate
heavy chains, light chains, as Fab, Fab' F(ab')2, and Fv, or as
single chain binding molecules in which heavy and light chain
variable domains are linked through a spacer.
IV. EXPRESSION OF BINDING MOLECULES
[0132] A binding molecule of the invention can be prepared by
recombinant expression of immunoglobulin light and heavy chain
genes in a host cell. To express a binding molecule recombinantly,
a host cell is transfected with one or more recombinant expression
vectors carrying DNA fragments encoding the immunoglobulin light
and heavy chains of the binding molecule such that the light and
heavy chains are expressed in the host cell and, preferably,
secreted into the medium in which the host cells are cultured, from
which medium the binding molecules can be recovered. Standard
recombinant DNA methodologies are used obtain antibody heavy and
light chain genes, incorporate these genes into recombinant
expression vectors and introduce the vectors into host cells, such
as those described in Sambrook, Fritsch and Maniatis (eds),
Molecular Cloning; A Laboratory Manual, Second Edition, Cold Spring
Harbor, N.Y., (1989), Ausubel, F. M. et al. (eds.) Current
Protocols in Molecular Biology, Greene Publishing Associates,
(1989) and in U.S. Pat. No. 4,816,397 by Boss et al.
[0133] To express the binding molecules of the invention, DNAs
encoding partial or full-length light and heavy chains are inserted
into expression vectors such that the genes are operatively linked
to transcriptional and translational control sequences. In this
context, the term "operatively linked" is intended to mean that a
binding molecule gene is ligated into a vector such that
transcriptional and translational control sequences within the
vector serve their intended function of regulating the
transcription and translation of the binding molecule gene. The
expression vector and expression control sequences are chosen to be
compatible with the expression host cell used. The binding molecule
light chain gene and the binding molecule heavy chain gene can be
inserted into separate vector or, more typically, both genes are
inserted into the same expression vector. The binding molecule
genes are inserted into the expression vector by standard methods
(e.g., ligation of complementary restriction sites on the binding
molecule gene fragment and vector, or blunt end ligation if no
restriction sites are present). Prior to insertion of the binding
molecule light or heavy chain sequences, the expression vector may
already carry binding molecule constant region sequences. For
example, one approach to converting VH and VL sequences to
full-length binding molecule genes is to insert them into
expression vectors already encoding heavy chain constant and light
chain constant regions, respectively, such that the VH segment is
operatively linked to the CH segment(s) within the vector and the
VL segment is operatively linked to the CL segment within the
vector. Additionally or alternatively, the recombinant expression
vector can encode a signal peptide that facilitates secretion of
the binding molecule chain from a host cell. The binding molecule
chain gene can be cloned into the vector such that the signal
peptide is linked in-frame to the amino terminus of the binding
molecule chain gene. The signal peptide can be, for example, an
immunoglobulin signal peptide or a heterologous signal peptide
(i.e., a signal peptide from a non-immunoglobulin protein).
[0134] In addition to the binding molecule chain genes, the
recombinant expression vectors of the invention carry regulatory
sequences that control the expression of the binding molecule chain
genes in a host cell. The term "regulatory sequence" is intended to
include promoters, enhancers and other expression control elements
(e.g., polyadenylation signals) that control the transcription or
translation of the binding molecule chain genes. Such regulatory
sequences are described, for example, in Goeddel; Gene Expression
Technology: Methods in Enzymology 185, Academic Press, San Diego,
Calif. (1990). It will be appreciated by those skilled in the art
that the design of the expression vector, including the selection
of regulatory sequences may depend on such factors as the choice of
the host cell to be transformed, the level of expression of protein
desired, etc. Preferred regulatory sequences for mammalian host
cell expression include viral elements that direct high levels of
protein expression in mammalian cells, such as promoters and/or
enhancers derived from cytomegalovirus (CMV) (such as the CMV
promoter/enhancer), Simian Virus 40 (SV40) (such as the SV40
promoter/enhancer), adenovirus, (e.g., the adenovirus major late
promoter (AdMLP)) and polyoma. For further description of viral
regulatory elements, and sequences thereof, see e.g., U.S. Pat. No.
5,168,062 by Stinski, U.S. Pat. No. 4,510,245 by Bell et al. and
U.S. Pat. No. 4,968,615 by Schaffner et al.
[0135] In addition to the binding molecule chain genes and
regulatory sequences, the recombinant expression vectors of the
invention may carry additional sequences, such as sequences that
regulate replication of the vector in host cells (e.g., origins of
replication) and selectable marker genes. The selectable marker
gene facilitates selection of host cells into which the vector has
been introduced (see e.g., U.S. Pat. Nos. 4,399,216, 4,634,665 and
5,179,017, all by Axel et al.). For example, typically the
selectable marker gene confers resistance to drugs, such as G418,
hygromycin or methotrexate, on a host cell into which the vector
has b een introduced. Preferred selectable marker genes include the
dihydrofolate reductase (DHFR) gene (for use in dhfr- host cells
with methotrexate selection/amplification) and the neo gene (for
G418 selection).
[0136] For expression of the light and heavy chains, the expression
vector(s) encoding the binding molecule heavy and light chains is
transfected into a host cell by standard techniques. The various
forms of the term "transfection" are intended to encompass a wide
variety of techniques commonly used for the introduction of
exogenous DNA into a prokaryotic or eukaryotic host cell, e.g.,
electroporation, calcium-phosphate precipitation, DEAE-dextran
transfection and the like. It is possible to express the binding
molecules of the invention in either prokaryotic or eukaryotic host
cells, expression of binding molecules in eukaryotic cells, and
most preferably mammalian host cells, is the most preferred because
such eukaryotic cells, and in particular mammalian cells, are more
likely than prokaryotic cells to assemble and secrete a properly
folded and immunologically active binding molecule.
[0137] Commonly, expression vectors contain selection markers
(e.g., ampicillin-resistance, hygromycin-resistance, tetracycline
resistance or neomycin resistance) to permit detection of those
cells transformed with the desired DNA sequences (see, e.g.,
Itakura et al., U.S. Pat. No. 4,704,362).
[0138] E. coli is one prokaryotic host particularly useful for
cloning the polynucleotides (e.g., DNA sequences) of the present
invention. Other microbial hosts suitable for use include bacilli,
such as Bacillus subtilus, and other enterobacteriaceae, such as
Salmonella, Serratia, and various Pseudomonas species. In these
prokaryotic hosts, one can also make expression vectors, which will
typically contain expression control sequences compatible with the
host cell (e.g., an origin of replication). In addition, any number
of a variety of well-known promoters will be present, such as the
lactose promoter system, a tryptophan (trp) promoter system, a
beta-lactamase promoter system, or a promoter system from phage
lambda. The promoters will typically control expression, optionally
with an operator sequence, and have ribosome binding site sequences
and the like, for initiating and completing transcription and
translation.
[0139] Other microbes, such as yeast, are also useful for
expression. Saccharomyces is a preferred yeast host, with suitable
vectors having expression control sequences (e.g., promoters), an
origin of replication, termination sequences and the like as
desired. Typical promoters include 3-phosphoglycerate kinase and
other glycolytic enzymes. Inducible yeast promoters include, among
others, promoters from alcohol dehydrogenase, isocytochrome C, and
enzymes responsible for maltose and galactose utilization.
[0140] In addition to microorganisms, mammalian tissue cell culture
may also be used to express and produce the polypeptides of the
present invention (e.g., polynucleotides encoding binding
molecules). See Winnacker, From Genes to Clones, VCH Publishers,
N.Y., N.Y. (1987). Eukaryotic cells are actually preferred, because
a number of suitable host cell lines capable of secreting
heterologous proteins (e.g., intact binding molecules) have been
developed in the art, and include CHO cell lines, various Cos cell
lines, HeLa cells, preferably, myeloma cell lines, or transformed
B-cells or hybridomas. Preferably, the cells are nonhuman.
Expression vectors for these cells can include expression control
sequences, such as an origin of replication, a promoter, and an
enhancer (Queen et al., Immunol. Rev. 89:49 (1986)), and necessary
processing information sites, such as ribosome binding sites, RNA
splice sites, polyadenylation sites, and transcriptional terminator
sequences. Preferred expression control sequences are promoters
derived from immunoglobulin genes, SV40, adenovirus, bovine
papilloma virus, cytomegalovirus and the like. See Co et al., J.
Immunol. 148:1149 (1992).
[0141] Alternatively, binding molecule-coding sequences can be
incorporated in transgenes for introduction into the genome of a
transgenic animal and subsequent expression in the milk of the
transgenic animal (see, e.g., Deboer et al., U.S. Pat. No.
5,741,957, Rosen, U.S. Pat. No. 5,304,489, and Meade et al., U.S.
Pat. No. 5,849,992). Suitable transgenes include coding sequences
for light and/or heavy chains in operable linkage with a promoter
and enhancer from a mammary gland specific gene, such as casein or
beta lactoglobulin.
[0142] Preferred mammalian host cells for expressing the
recombinant binding molecules of the invention include Chinese
Hamster Ovary (CHO cells) (including dhfr- CHO cells, described in
Urlaub and Chasin, (1980) Proc. Natl. Acad. Sci. USA 77:4216-4220,
used with a DHFR selectable marker, e.g., as described in R. J.
Kaufman and P. A. Sharp (1982) Mol. Biol. 159:601-621), NSO myeloma
cells, COS cells and SP2 cells. When recombinant expression vectors
encoding binding molecule genes are introduced into mammalian host
cells, the binding molecules are produced by culturing the host
cells for a period of time sufficient to allow for expression of
the binding molecule in the host cells or, more preferably,
secretion of the binding molecule into the culture medium in which
the host cells are grown. Binding molecules can be recovered from
the culture medium using standard protein purification methods.
[0143] The vectors containing the polynucleotide sequences of
interest (e.g., the binding molecule encoding sequences and
expression control sequences) can be transferred into the host cell
by well-known methods, which vary depending on the type of cellular
host. For example, calcium chloride transfection is commonly
utilized for prokaryotic cells, whereas calcium phosphate
treatment, electroporation, lipofection, biolistics or viral-based
transfection may be used for other cellular hosts. (See generally
Sambrook et al., Molecular Cloning: A Laboratory Manual (Cold
Spring Harbor Press, 2nd ed., 1989) (incorporated by reference in
its entirety for all purposes). Other methods used to transform
mammalian cells include the use of polybrene, protoplast fusion,
liposomes, electroporation, and microinjection (see generally,
Sambrook et al., supra). For production of transgenic animals,
transgenes can be microinjected into fertilized oocytes, or can be
incorporated into the genome of embryonic stem cells, and the
nuclei of such cells transferred into enucleated oocytes.
[0144] When heavy and light chains are cloned on separate
expression vectors, the vectors are co-transfected to obtain
expression and assembly of intact binding molecules. Once
expressed, the whole binding molecule, their dimers, individual
light and heavy chains, or other immunoglobulin forms of the
present invention can be purified according to standard procedures
of the art, including ammonium sulfate precipitation, affinity
columns, column chromatography, HPLC purification, gel
electrophoresis and the like (see generally Scopes, Protein
Purification (Springer-Verlag, N.Y., (1982)). Substantially pure
binding molecules of at least about 90 to 95% homogeneity are
preferred, and 98 to 99% or more homogeneity most preferred, for
pharmaceutical uses.
[0145] Host cells can also be used to produce portions of intact
binding molecules, such as Fab fragments or scFv molecules. It will
be understood that variations on the above procedure are within the
scope of the present invention. For example, it may be desirable to
transfect a host cell with DNA encoding either the light chain or
the heavy chain (but not both) of a binding molecule of this
invention. Recombinant DNA technology may also be used to remove
some, or all of the DNA encoding either or both of the light and
heavy chains that is not necessary for binding to ILT3. The
molecules expressed from such truncated DNA molecules are also
encompassed by the binding molecules of the invention. In addition,
bifunctional binding molecules may be produced in which one heavy
and one light chain are a binding molecule of the invention and the
other heavy and light chain are specific for an antigen other than
ILT3 by crosslinking a binding molecule of the invention to a
second binding molecule by standard chemical crosslinking
methods.
[0146] In view of the foregoing, another aspect of the invention
pertains to nucleic acid, vector and host cell compositions that
can be used for recombinant expression of the binding molecules of
the invention. The nucleotide sequence encoding the 9B11 light
chain variable region is shown in FIG. 6 and SEQ ID NO: 10. The
CDR1 domain of the VL encompasses nucleotides 130-162, the CDR2
domain encompasses nucleotides 208-228, and the CDR3 domain
encompasses nucleotides 325-351 of SEQ ID NO:10. The nucleotide
sequence encoding the 9B11 heavy chain variable region is also
shown in FIG. 6 and SEQ ID NO: 9. The CDR1 domain of the VII
encompasses nucleotides 133-162, the CDR2 domain encompasses
nucleotides 205-255, and the CDR3 domain encompasses nucleotides
352-372 of SEQ ID NO:9. It will be appreciated by the skilled
artisan that nucleotide sequences encoding 9B11-related binding
molecule can be derived from the nucleotide sequences encoding the
9B11 VL and VH using the genetic code and standard molecular
biology techniques.
[0147] In one embodiment, the invention provides isolated nucleic
acids encoding a 9B11-related CDR domain, e.g., comprising an amino
acid sequence selected from the group consisting of: SEQ ID NO: 3,
SEQ ID NO: 4, SEQ ID NO: 5, SEQ ID NO: 6, SEQ ID NO: 7, and SEQ ID
NO: 8.
[0148] In still another embodiment, the invention provides an
isolated nucleic acid encoding a binding molecule light chain
variable region comprising the amino acid sequence of SEQ ID NO: 2,
although the skilled artisan will appreciate that due to the
degeneracy of the genetic code, other nucleotide sequences can
encode the amino acid sequence of SEQ ID NO: 2. The nucleic acid
can encode only the LCVR or can also encode a binding molecule
light chain constant region, operatively linked to the LCVR. In one
embodiment, this nucleic acid is in a recombinant expression
vector.
[0149] In still another embodiment, the invention provides an
isolated nucleic acid encoding a binding molecule heavy chain
variable region comprising the amino acid sequence of SEQ ID NO: 1,
although the skilled artisan will appreciate that due to the
degeneracy of the genetic code, other nucleotide sequences can
encode the amino acid sequence of SEQ ID NO: 1. The nucleic acid
can encode only the VH or can also encode a heavy chain constant
region, operatively linked to the VH. For example, the nucleic acid
can comprise an IgG1 or IgG2 constant region. In one embodiment,
this nucleic acid is in a recombinant expression vector.
[0150] The invention also provides recombinant expression vectors
encoding a binding molecule heavy chain and/or a binding molecule
light chain. For example, in one embodiment, the invention provides
a recombinant expression vector encoding: [0151] a) a binding
molecule light chain having a variable region comprising the amino
acid sequence of SEQ ID NO: 2; and [0152] b) a binding molecule
heavy chain having a variable region comprising the amino acid
sequence of SEQ ID NO: 1.
[0153] The invention also provides host cells into which one or
more of the recombinant expression vectors of the invention have
been introduced. Preferably, the host cell is a mammalian host
cell.
[0154] Still further the invention provides a method of
synthesizing a recombinant binding molecule of the invention by
culturing a host cell of the invention in a suitable culture medium
until a recombinant binding molecule of the invention is
synthesized. The method can further comprise isolating the
recombinant binding molecule from the culture medium.
V. USES OF THE BINDING MOLECULES OF THE INVENTION
[0155] Given their ability to bind to ILT3, the binding molecules
of the invention can be used to detect ILT3 (e.g., in a biological
sample, such as serum or plasma), using a conventional immunoassay,
such as an enzyme linked immunosorbent assays (ELISA), an
radioimmunoassay (RIA) or tissue immunohistochemistry. The
invention provides a method for detecting hILT3 in a biological
sample comprising contacting a biological sample with a binding
molecule of the invention and detecting either the binding molecule
bound to hILT3 or unbound binding molecule, to thereby detect hILT3
in the biological sample. The binding molecule is directly or
indirectly labeled with a detectable substance to facilitate
detection of the bound or unbound binding molecule. Suitable
detectable substances include various enzymes, prosthetic groups,
fluorescent materials, luminescent materials and radioactive
materials. Examples of suitable enzymes include horseradish
peroxidase, alkaline phosphatase, 1.beta.-galactosidase, or
acetylcholinesterase; examples of suitable prosthetic group
complexes include streptavidinlbiotin and avidin/biotin; examples
of suitable fluorescent materials include umbelliferone,
fluorescein, fluorescein isothiocyanate, rhodamine,
dichlorotriazinylamine fluorescein, dansyl chloride or
phycoerythrin; an example of a luminescent material includes
luminol; and examples of suitable radioactive material include
.sup.125I, .sup.131I, .sup.35S or .sup.3H.
[0156] Alternative to labeling the binding molecule, hILT3 can be
assayed in biological fluids by a competition immunoassay utilizing
ILT3 standards labeled with a detectable substance and an unlabeled
anti-hILT3 binding molecule. In this assay, the biological sample,
the labeled ILT3 standards and the anti-hILT3 binding molecule are
combined and the amount of labeled ILT3 standard bound to the
unlabeled binding molecule is determined. The amount of hILT3 in
the biological sample is inversely proportional to the amount of
labeled ILT3 standard bound to the anti-hILT3 binding molecule.
[0157] An anti-ILT3 binding molecule of the invention can also be
used to detect ILT3s from species other than humans, in particular
ILT3s from primates (e.g., chimpanzee, baboon, marmoset, cynomolgus
and rhesus).
Methods of Downmodulating Immune Responses In Vitro and In Vivo
[0158] As described in the appended examples, the binding molecules
of the invention can be used as immunoinhibitory compositions in
vitro to inhibit immune cell activation, such as an alloimmune
response (e.g., an MLC), by cells. In one embodiment, cells are
treated with an ILT-3 binding molecule in vitro, e.g., for one,
two, three, four, five, six, seven days, e.g., to reduce their
state of activation prior to their infusion into a subject.
[0159] Accordingly, in one embodiment, the invention provides a
method for modulating, e.g., downmodulating, immune cell
activation, e.g., an alloimmune response, in vitro. In another
embodiment, the invention provides a method of downmodulating
immune cell activation in vivo comprising introducing cells treated
in vitro with an ILT-3 binding molecule into a subject. Modulation
of an alloimmune response can be assayed using art recognized
techniques, for example, by measuring the ability of the binding
molecule to modulate the proliferative ability of T cells, e.g., in
a mixed lymphocyte reaction.
[0160] The binding molecules of the invention may also be used to
downmodulate the production of inflammatory cytokines, e.g.,
IL12p40, IL12p70, and TNF.alpha., by DC, e.g., MDDC, in vitro,
e.g., prior to introduction into a subject. Downmodulation of
inflammatory cytokine production by DC can be assayed, for example,
by ELISA.
[0161] In another embodiment, the binding molecules of the
invention may also be used to downmodulate the upregulation of
costimulatory molecules, e.g., CD86, CD80, CD83, and HLA-DR, by DC,
e.g., MDDC, in vitro, e.g., prior to introduction into a subject.
Downmodulation of the upregulation of costimulatory molecules by DC
can be assayed, for example, by FACs analysis.
[0162] In yet another embodiment, the binding molecules of the
invention may also be used to downmodulate calcium flux in
monocytes in vitro, e.g., prior to their introduction into a
subject. Calcium flux in monocytes can be measured, for example, by
FACs analysis or by calcium-chelation luminescence
spectrophotometry. See for example, Rabin, et al. (1999) J.
Immunol. 162:3840-3850, Youn, B. S., et al. (1998) Blood 91:3118,
and Youn, B. S., et al. (1997) J. Immunol. 159:5201, the contents
of each of these references is hereby incorporated herein by
reference.
[0163] In one embodiment, the binding molecules of the invention
may be used to upregulate the expression of inhibitory receptors on
a cell, such as a dendritic cell, e.g., an immature dendritic cell.
Exemplary inhibitory receptors whose expression is upregulated by
the binding molecules of the invention include, but are not limited
to, CD200R, CD40L and IDO (indolamine).
[0164] In one aspect, the invention relates to a method for
preventing in a subject, a disease or condition associated with
unwanted immune cell activation comprising treating cells in vitro
with an ILT-3 binding agent and introducing them into a compatible
subject or reintroducing them into the same subject. Subjects at
risk for a disease that would benefit from treatment with the
claimed agents or methods can be identified, for example, by any or
a combination of diagnostic or prognostic assays known in the art.
Administration of a prophylactic agent can occur prior to the
manifestation of symptoms associated with an unwanted or less than
desirable immune response.
[0165] Diseases or pathological conditions that would benefit from
downmodulating the activity of ILT3 on APC, e.g., monocytes,
macrophages, and DC, e.g., MDDC, include situations oftissue, skin
and organ transplantation or graft-versus-host disease (GVHD). For
example, blockage of immune cell activation results in reduced
tissue destruction in tissue transplantation. Typically, in tissue
transplants, rejection of the transplant is initiated through its
recognition as foreign by immune cells, followed by an immune
reaction that destroys the transplant. The cells treated in vitro
with an anti-ILT3 binding molecule can be administered alone or in
conjunction with another agent which downmodulates immune cell
activation, prior to or at the time of transplantation to reduce
immune cell activation to the transplant (e.g., hormonal therapy,
immunotherapy, e.g., immunosuppressive therapy, antibiotics, and
immunoglobulin). Generally, administration of products of a species
origin or species reactivity (in the case of binding molecules)
that is the same species as that of the patient is preferred. It
may also be desirable to block the costimulatory function of other
polypeptides. For example, it may be desirable to block the
function of B7-1, B7-2, or B7-1 and B7-2 by administering a soluble
form of a combination of peptides having an activity of each of
these antigens, blocking antibodies against these antigens or
blocking small molecules (separately or together in a single
composition) prior to or at the time of transplantation. Other
downmodulatory agents that can be used in connection with the
downmodulatory methods of the invention include, for example,
agents that transmit an inhibitory signal via CTLA4, soluble forms
of CTLA4, antibodies that activate an inhibitory signal via CTLA4,
blocking antibodies against other immune cell markers or soluble
forms of other receptor ligand pairs (e.g., agents that disrupt the
interaction between CD40 and CD40 ligand (e.g., anti CD40 ligand
antibodies)), antibodies against cytokines, or immunosuppressive
drugs.
[0166] Moreover, modulation of ILT3, and/or inhibition of
costimulatory signals, and/or upregulation of other inhibitory
receptors, may also be sufficient to anergize the immune cells,
thereby inducing tolerance in a subject. Induction of long-term
tolerance by modulating ILT3 may avoid the necessity of repeated
administration of these blocking reagents.
[0167] Accordingly, the methods of the invention can be used to
treat a subject suffering from a disorder, which method comprises
contacting a cell from a subject with a binding molecule of the
invention such that an immune response is downmodulated.
Preferably, the subject is a human subject. Alternatively, the
subject can be a mammal expressing ILT3 with which a binding
molecule of the invention cross-reacts.
Methods of Upmodulating Immune Responses In Vivo
[0168] As described in the appended examples, the binding molecules
of the invention can be used as immunostimulatory compositions,
e.g., alone or as part of a vaccine, to promote B cell, and/or T
cell activation, e.g., either Th1 or Th2 cell activation, in a
subject. That is, the binding molecules of the invention can serve
as adjuvants used in combination with an antigen of interest to
enhance an immune response to that antigen of interest in vivo. For
example, to stimulate an antibody or cellular immune response to an
antigen of interest (e.g., for vaccination purposes), the antigen
and a binding molecules of the invention can be coadministered
(e.g., coadministered at the same time in the same or separate
compositions, or sequentially in time such that an enhanced immune
response occurs). The antigen of interest and the binding molecules
can be formulated together into a single pharmaceutical composition
or in separate compositions. In a preferred embodiment, the antigen
of interest and the binding molecule are administered
simultaneously to the subject. Alternatively, in certain situations
it may be desirable to administer the antigen first and then the
binding molecule or vice versa (for example, in the case of an
antigen that naturally evokes a Th1 response, it may be beneficial
to first administer the antigen alone to stimulate a Th1 response
and then administer a binding molecule, alone or together with a
boost of antigen, to shift the immune response to a Th2 response).
In preferred embodiments, an ILT3 binding molecule of the invention
is administered at the time of priming with antigen, i.e., at the
time of the first administration of antigen. For example, day -3,
-2, -1, 0, +1, +2, +3. A particularly preferred day of
administration of an ILT3 binding molecule of the invention is
day-1.
[0169] In one embodiment, an ILT-3 binding molecule is administered
with an antigen of interest. An antigen of interest is one to which
an immune response is desired. For example, one capable of
providing protection in subject against challenge by an infectious
agent from which the antigen was derived. In another embodiment,
the invention pertains to administration of an ILT-3 binding
molecule of the invention to increase immune responses without
having to administer an antigen.
[0170] Exemplary antigens of interest therefore include those
derive from infectious agents, wherein an immune response directed
against the antigen serves to prevent or treat disease caused by
the agent. Such antigens include, but are not limited to, viral,
bacterial, fungal or parasite proteins and any other proteins,
glycoproteins, lipoprotein, glycolipids, and the like. Antigens of
interest also include those which provide benefit to a subject
which is at risk for acquiring or which is diagnosed as having a
tumor. The subject is preferably a mammal and most preferably, is a
human.
[0171] Typical antigens of interest may be classified as follows:
protein antigens, such as ceruloplasmin and serum albumin;
bacterial antigens, such as teichoic acids, flagellar antigens,
capsular polysaccharides, and extra-cellular bacterial products and
toxins; glycoproteins and glycolipids; viruses, such as animal,
plant, and bacterial viruses; conjugated and synthetic antigens,
such as proteinhapten conjugates, molecules expressed
preferentially by tumors, compared to normal tissue; synthetic
polypeptides; and nucleic acids, such as ribonucleic acid and
deoxyribonucleic acid. The term "infectious agent," as used herein,
includes any agent which expresses an antigen which elicits a host
cellular immune response. Non-limiting examples of viral antigens
which may be considered useful as include, but are not limited to,
the nucleoprotein (NP) of influenza virus and the Gag proteins of
HIV. Other heterologous antigens include, but are not limited to,
HIV Env protein or its component parts gp120 and gp41, HIV Nef
protein, and the HIV Pol proteins, reverse transcriptase and
protease. In addition, other viral antigens such as Ebola virus
(EBOV) antigens, such as, for example, EBOV NP or glycoprotein
(GP), either full-length or GP deleted in the mucin region of the
molecule (Yang Z-Y, et al. (2000) Nat Med 6:886-9, 2000), small pox
antigens, hepatitis A, B or C virus, human rhinovirus such as type
2 or type 14, Herpes simplex virus, poliovirus type 2 or 3,
foot-and-mouth disease virus (FMDV), rabies virus, rotavirus,
influenza virus, coxsackie virus, human papilloma virus (HPV), for
example the type 16 papilloma virus, the E7 protein thereof, and
fragments containing the E7 protein or its epitopes; and simian
immunodeficiency virus (SIV) may be used. The antigens of interest
need not be limited to antigens of viral origin. Parasitic
antigens, such as, for example, malarial antigens are included, as
are fungal antigens, bacterial antigens and tumor antigens.
Examples of antigens derived from bacteria are those derived from
Bordetella pertussis (e.g., P69 protein and filamentous
haemagglutinin (FHA) antigens), Vibrio cholerae, Bacillus
anthracis, and E. coli antigens such as E. coli heat Labile toxin B
subunit (LT-B), E. coli K88 antigens, and enterotoxigenic E. coli
antigens. Other examples of antigens include Schistosoma mansoni
P28 glutathione S-transferase antigens (P28 antigens) and antigens
of flukes, mycoplasma, roundworms, tapeworms, Chlamydia
trachomatis, and malaria parasites, e.g., parasites of the genus
plasmodium or babesia, for example Plasmodium falciparum, and
peptides encoding immunogenic epitopes from the aforementioned
antigens.
[0172] By the term "tumor-related antigen," as used herein, is
meant an antigen which affects tumor growth or metastasis in a host
organism. The tumor-related antigen may be an antigen expressed by
a tumor cell, or it may be an antigen which is expressed by a
non-tumor cell, but which when so expressed, promotes the growth or
metastasis of tumor cells. The types of tumor antigens and
tumor-related antigens include any known or heretofore unknown
tumor antigen, including, without limitation, the bcr/abl antigen
in leukemia, HPVE6 and E7 antigens of the oncogenic virus
associated with cervical cancer, the MAGE1 and MZ2-E antigens in or
associated with melanoma, and the MVC-1 and HER-2 antigens in or
associated with breast cancer.
[0173] An infection, disease or disorder which may be treated or
prevented by the administration of a composition of the invention
includes any infection, disease or disorder wherein a host immune
response acts to prevent the infection, disease or disorder.
Diseases, disorders, or infection which may be treated or prevented
by the administration of the compositions of the invention include,
but are not limited to, any infection, disease or disorder caused
by or related to a fungus, parasite, virus, or bacteria, diseases,
disorders or infections caused by or related to various agents used
in bioterrorism, listeriosis, Ebola virus, SARS, small pox,
hepatitis A, hepatitis B, hepatitis C, diseases and disorders
caused by human rhinovirus, HIV and AIDS, Herpes, polio,
foot-and-mouth disease, rabies, diseases or disorders caused by or
related to: rotavirus, influenza, coxsackie virus, human papilloma
virus, SIV, malaria, cancer, e.g., tumors, and diseases or
disorders caused by or related to infection by Bordetella
pertussis, Vibrio cholerae, Bacillus anthracis, E. coli, flukes,
mycoplasma, roundworms, tapeworms, Chlamydia trachomatis, and
malaria parasites, etc.
Immune Responses to Tumor Cells
[0174] Regulatory T cells play an important role in the-maintenance
of immunological self-tolerance by suppressing immune responses
against autoimmune diseases and cancer. Accordingly, in one
embodiment, upmodulating an immune response would be beneficial for
enhancing an immune response in cancer. Therefore, the binding
molecules of the invention can be used in the treatment of
malignancies, to inhibit tumor growth or metastasis. The binding
molecules may be administered systemically or locally to the tumor
site.
[0175] In one embodiment, modulation of ILT3 function may be useful
in the induction of tumor immunity. An ILT3 binding molecule can be
administered to a patient having tumor cells (e.g., sarcoma,
melanoma, lymphoma, leukemia, neuroblastoma, carcinoma) to overcome
tumor-specific tolerance in the subject.
[0176] As used herein, the term "neoplastic disease" is
characterized by malignant tumor growth or in disease states
characterized by benign hyperproliferative and hyperplastic cells.
The common medical meaning of the term "neoplasia" refers to "new
cell growth" that results as a loss of responsiveness to normal
growth controls, e.g., neoplastic cell growth.
[0177] As used herein, the terms "hyperproliferative",
"hyperplastic", malignant" and "neoplastic" are used
interchangeably, and refer to those cells in an abnormal state or
condition characterized by rapid proliferation or neoplasia. The
terms are meant to include all types of hyperproliferative growth,
hyperplastic growth, cancerous growths or oncogenic processes,
metastatic tissues or malignantly transformed cells, tissues, or
organs, irrespective of histopathologic type or stage of
invasiveness. A "hyperplasia" refers to cells undergoing an
abnormally high rate of growth. However, as used herein, the terms
neoplasia and hyperplasia can be used interchangeably, as their
context will reveal, referring generally to cells experiencing
abnormal cell growth rates. Neoplasias and hyperplasias include
"tumors," which may be either benign, premalignant or
malignant.
[0178] The terms "neoplasia," "hyperplasia," and "tumor" are often
commonly referred to as "cancer," which is a general name for more
than 100 disease that are characterized by uncontrolled, abnormal
growth of cells. Examples of cancer include, but are not limited
to: breast; colon; non-small cell lung, head and neck; colorectal;
lung; prostate; ovary; renal; melanoma; and gastrointestinal (e.g.,
pancreatic and stomach) cancer; and osteogenic sarcoma.
[0179] In one embodiment, the cancer is selected from the group
consisting of: pancreatic cancer, melanomas, breast cancer, lung
cancer, bronchus cancer, colorectal cancer, prostate cancer,
pancreas cancer, stomach cancer, ovarian cancer, urinary bladder
cancer, brain or central nervous system cancer, p ripheral nervous
system cancer, esophageal cancer, cervical cancer, uterine or
endometrial cancer, cancer of the oral cavity or pharynx, liver
cancer, kidney cancer, testicular cancer, biliary tract cancer,
small bowel or appendix cancer, salivary gland cancer, thyroid
gland cancer, adrenal gland cancer, osteosarcoma, chondrosarcoma,
cancer of hematological tissues.
Immune Responses to Infectious Agents
[0180] Upregulation of immune responses may be in the form of
enhancing an existing immune response or eliciting an initial
immune response. For example, enhancing an immune response by
modulation of ILT3 may be useful in cases of viral infection. As
anti-ILT3 binding molecules act to enhance immune responses, they
would be therapeutically useful in situations where more rapid or
thorough clearance of pathogenic agents, e.g., bacteria and viruses
would be beneficial.
[0181] As used herein, the term "viral infection" includes
infections with organisms including, but not limited to, HIV (e.g.,
HIV-1 and HIV-2), human herpes viruses, cytomegalovirus (esp.
Human), Rotavirus, Epstein-Barr virus, Varicella Zoster Virus,
hepatitis viruses, such as hepatitis B virus, hepatitis A virus,
hepatitis C virus and hepatitis E virus, paramyxoviruses:
Respiratory Syncytial virus, parainfluenza virus, measles virus,
mumps virus, human papilloma viruses (for example HPV6, 11, 16, 18
and the like), flaviviruses (e.g. Yellow Fever Virus, Dengue Virus,
Tick-borne encephalitis virus, Japanese Encephalitis Virus) or
influenza virus.
[0182] As used herein, the term "bacterial infections" include
infections with a variety of bacterial organisms, including
gram-positive and gram-negative bacteria. Examples include, but are
not limited to, Neisseria spp, including N. gonorrhea and N
meningitidis, Streptococcus spp, including S. pneumoniae, S.
pyogenes, S. agalactiae, S. mutans; Haemophilus spp, including H.
influenzae type B, non typeable H. influenzae, H ducreyi; Moraxella
spp, including M. catarrhalis, also known as Branhamella
catarrhalis; Bordetella spp, including B. pertussis, B.
parapertussis and B. bronchiseptica; Mycobacterium spp., including
M. tuberculosis, M. bovis, M. leprae, M. avium, M.
paratuberculosis, M. smegmatis; Legionella spp, including L.
pneumophila; Escherichia spp, including enterotoxic E. coli,
enterohemorragic E. coli, enteropathogenic E. coli; Vibrio spp,
including V. cholera, Shigella spp, including S. sonnei, S.
dysenteriae, S. flexnerii; Yersinia spp, including Y.
enterocolitica, Y. pestis, Y. pseudotuberculosis, Campylobacter
spp, including C. jejuni and E. coli; Salmonella spp, including S.
typhi, S. paratyphi, S. choleraesuis, S. enteritidis; Listeria
spp., including L. monocytogenes; Helicobacter spp, including H.
pylori; Pseudomonas spp, including P. aeruginosa, Staphylococcus
spp., including S. aureus, S. epidermidis; Enterococcus spp.,
including E. faecalis, E. faecium; Clostridium spp., including C.
tetani, C. botulinum, C. difficile; Bacillus spp., including B.
anthracia; Corynebacterium spp., including C. diphtheriae; Borrelia
spp., including B. burgdorferi, B. garinii, B. afzelii, B.
andersonii, B. hermsii; Ehrlichia spp., including E. equi and the
agent of the Human Granulocytic Ehrlichiosis; Rickettsia spp,
including R. rickettsii; Chlamydia spp., including C. trachomatis,
C. neumoniae, C. psittaci; Leptsira spp., including L. interrogans;
Treponema spp., including T. pallidum, T. denticola, T.
hyodysenteriae. Preferred bacteria include, but are not limited to,
Listeria, mycobacteria, mycobacteria (e.g., tuberculosis), Anthrax,
Salmonella and Listeria monocytogenes.
[0183] In another embodiment, T cells can be removed from a
patient, and contacted in vitro with an anti-ILT3 binding molecule,
optionally with an activating signal (e.g., antigen plus APCs or a
polyclonal antibody) and reintroduced into the patient.
[0184] Anti-ILT3 binding molecules may also be used
prophylactically in vaccines against various pathogens. Immunity
against a pathogen, e.g., a virus, could be induced by vaccinating
with a viral protein along with an ILT3 binding molecule (as
described above). Alternately, an expression vector which encodes
genes for both a pathogenic antigen and an ILT3 binding molecule,
e.g., a vaccinia virus expression vector engineered to express a
nucleic acid encoding a viral protein and a nucleic acid encoding
an ILT3 binding molecule, can be used for vaccination. Pathogens
for which vaccines may be useful include, for example, hepatitis B,
hepatitis C, Epstein-Barr virus, cytomegalovirus, HIV-1, HIV-2,
tuberculosis, malaria and schistosomiasis.
[0185] The present invention further encompasses binding molecules
conjugated to a diagnostic or therapeutic agent. The binding
molecules can be used diagnostically to, for example, monitor the
development or progression of a tumor as part of a clinical testing
procedure to, e.g., determine the efficacy of a given treatment
regimen. Detection can be facilitated by coupling the antibody to a
detectable substance. Examples of detectable substances include
various enzymes, prosthetic groups, fluorescent materials,
luminescent materials, bioluminescent materials, radioactive
materials, positron emitting metals using various positron emission
tomographies, and nonradioactive paramagnetic metal ions. The
detectable substance may be coupled or conjugated either directly
to the binding molecule or indirectly, through an intermediate
(such as, for example, a linker known in the art) using techniques
known in the art. See, for example, U.S. Pat. No. 4,741,900 for
metal ions which can be conjugated to binding molecules for use as
diagnostics according to the present invention. Examples of
suitable enzymes include horseradish peroxidase, alkaline
phosphatase, beta-galactosidase, or acetylcholinesterase; examples
of suitable prosthetic group complexes include streptavidin/biotin
and avidin/biotin; examples of suitable fluorescent materials
include umbelliferone, fluorescein, fluorescein isothiocyanate,
rhodamine, dichlorotriazinylamine fluorescein, dansyl chloride or
phycoerythrin; an example of a luminescent material includes
luminol; examples of bioluminescent materials include luciferase,
luciferin, and aequorin; and examples of suitable radioactive
material I.sup.25, I.sup.131, I.sup.111, In.sup.99TC
[0186] Further, a binding molecule may be conjugated to a
therapeutic moiety such as a cytotoxin, e.g., a cytostatic or
cytocidal agent, a therapeutic agent or a radioactive metal ion,
e.g., alpha-emitters such as, for example, .sup.213Bi. A cytotoxin
or cytotoxic agent includes any agent that is detrimental to cells.
Examples include paclitaxol, cytochalasin B, gramicidin D, ethidium
bromide, emetine, mitomycin, etoposide, tenoposide, vincristine,
vinblastine, colchicin, doxorubicin, daunorubicin, dihydroxy
anthracin dione, mitoxantrone, mithramycin, actinomycin D,
1-dehydrotestosterone, glucocorticoids, procaine, tetracaine,
lidocaine, propranolol, and puromycin and analogs or homologs
thereof. Therapeutic agents include, but are not limited to,
antimetabolites (e.g., methotrexate, 6-mercaptopurine,
6-thioguanine, cytarabine, 5-fluorouracil decarbazine), alkylating
agents (e.g., mechlorethamine, thioepa chlorambucil, melphalan,
camustine (BSNU) and lomustine (CCNU), cyclothosphamide, busulfan,
dibromomannitol, streptozotocin, mitomycin C, and
cis-dichlorodiamine platinum (II) (DDP) cisplatin), anthracyclines
(e.g., daunorubicin (formerly daunomycin) and doxorubidn),
antibiotics (e.g., dactinomycin (formerly actinomycin), bleomycin,
mithramycin, and anthramycin (AMC)), and anti-mitotic agents (e.g.,
vincristine and vinblastine).
[0187] The present invention is further directed to binding
molecule-based therapies which involve administering binding
molecules of the invention to an animal, preferably a mammal, and
most preferably a human, patient for treating, detecting, and/or
preventing one or more of the disclosed diseases, disorders, or
conditions. Therapeutic compounds of the invention include, but are
not limited to, binding molecules of the invention (including
analogs and derivatives thereof as described herein) and
anti-idiotypic binding molecules as described herein. The binding
molecules of the invention can be used to treat, diagnose, inhibit
or prevent diseases, disorders or conditions associated with
aberrant activity of ILT3, including, but not limited to, any one
or more of the diseases, disorders, or conditions described herein
(e.g., binding molecules of the invention may be provided in
pharmaceutically acceptable compositions as known in the art or as
described herein.
[0188] The binding molecules of this invention may be
advantageously utilized in combination with other monoclonal or
chimeric binding molecules, or with lymphokines or hematopoietic
growth factors (such as, e.g., IL-2, IL-3 and IL-7), for example,
which serve to increase the number or activity of effector cells
which interact with the binding molecules.
[0189] The binding molecules of the invention may be administered
alone or in combination with other types of treatments (e.g.,
radiation therapy, chemotherapy, hormonal therapy, immunotherapy
and anti-tumor agents, antibiotics, and immunoglobulin). Generally,
administration of products of a species origin or species
reactivity (in the case of binding molecules) that is the same
species as that of the patient is preferred. Thus, in a preferred
embodiment, human binding molecules, derivatives, analogs, or
nucleic acids, are administered to a human patient for therapy or
prophylaxis.
[0190] A binding molecule of the invention can be administered to a
human subject for therapeutic purposes. Moreover, a binding
molecule of the invention can be administered to a non-human mammal
expressing ILT3 with which the binding molecule cross-reacts (e.g.,
a primate) for veterinary purposes or as an animal model of human
disease. Regarding the latter, such animal models may be useful for
evaluating the therapeutic efficacy of binding molecules of the
invention (e.g., testing of dosages and time courses of
administration).
[0191] The present invention is further directed to binding
molecule-based therapies which involve administering binding
molecules of the invention to an animal, preferably a mammal, and
most preferably a human, patient for treating, detecting, and/or
preventing one or more of the disclosed diseases, disorders, or
conditions. Therapeutic compounds of the invention include, but are
not limited to, binding molecules of the invention (including
analogs and derivatives thereof as described herein) and
anti-idiotypic binding molecules as described herein. The binding
molecules of the invention can be used to treat, diagnose, inhibit
or prevent diseases, disorders or conditions associated with
aberrant activity of ILT3, including, but not limited to, any one
or more of the diseases, disorders, or conditions described herein
(e.g., binding molecules of the invention may be provided in
pharmaceutically acceptable compositions as known in the art or as
described herein).
VI. PHARMACEUTICAL COMPOSITIONS
[0192] The binding molecules of the invention can be incorporated
into pharmaceutical compositions suitable for administration to a
subject. Typically, the pharmaceutical composition comprises a
binding molecule of the invention and a pharmaceutically acceptable
carrier. As used herein the language "pharmaceutically acceptable
carrier" is intended to include any and all solvents, dispersion
media, coatings, antibacterial and antifungal agents, isotonic and
absorption delaying agents, and the like, compatible with
pharmaceutical administration. The use of such media and agents for
pharmaceutically active substances is well known in the art. Except
insofar as any conventional media or agent is incompatible with the
active compound, use thereof in the compositions is contemplated.
Supplementary active compounds can also be incorporated into the
compositions.
[0193] A pharmaceutical composition of the invention is formulated
to be compatible with its intended route of administration.
Examples of routes of administration include parenteral, e.g.,
intravenous, intradermal, subcutaneous, oral (e.g., inhalation),
transdermal (topical), transmucosal, and rectal administration.
Solutions or suspensions used for parenteral, intradermal, or
subcutaneous application can include the following components: a
sterile diluent such as water for injection, saline solution, fixed
oils, polyethylene glycols, glycerine, propylene glycol or other
synthetic solvents; antibacterial agents such as benzyl alcohol or
methyl parabens; antioxidants such as ascorbic acid or sodium
bisulfite; chelating agents such as ethylenediaminetetraacetic
acid; buffers such as acetates, citrates or phosphates and agents
for the adjustment of tonicity such as sodium chloride or dextrose.
pH can be adjusted with acids or bases, such as hydrochloric acid
or sodium hydroxide. The parenteral preparation can be enclosed in
ampules, disposable syringes or multiple dose vials made of glass
or plastic.
[0194] Pharmaceutical compositions suitable for injectable use
include sterile aqueous solutions (where water soluble) or
dispersions and sterile powders for the extemporaneous preparation
of sterile injectable solutions or dispersion. For intravenous
administration, suitable carriers include physiological saline,
bacteriostatic water, Cremophor EL.TM. (BASF, Parsippany, N.J.) or
phosphate buffered saline (PBS). In all cases, the composition must
be sterile and should be fluid to the extent that easy
syringeability exists. It must be stable under the conditions of
manufacture and storage and must be preserved against the
contaminating action of microorganisms such as bacteria and fungi.
The carrier can be a solvent or dispersion medium containing, for
example, water, ethanol, polyol (for example, glycerol, propylene
glycol, and liquid polyethylene glycol, and the like), and suitable
mixtures thereof. The proper fluidity can be maintained, for
example, by the use of a coating such as lecithin, by the
maintenance of the required particle size in the case of dispersion
and by the use of surfactants. Prevention of the action of
microorganisms can be achieved by various antibacterial and
antifungal agents, for example, parabens, chlorobutanol, phenol,
ascorbic acid, thimerosal, and the like. In many cases, it is
preferable to include isotonic agents, for example, sugars,
polyalcohols such as mannitol, sorbitol, and sodium chloride in the
composition. Prolonged absorption of the injectable compositions
can be brought about by including in the composition an agent which
delays absorption, for example, aluminum monostearate and
gelatin.
[0195] Sterile injectable solutions can be prepared by
incorporating the active compound in the required amount in an
appropriate solvent with one or a combination of ingredients
enumerated above, as required, followed by filtered sterilization.
Generally, dispersions are prepared by incorporating the active
compound into a sterile vehicle which contains a basic dispersion
medium and the required other ingredients from those enumerated
above. In the case of sterile powders for the preparation of
sterile injectable solutions, the preferred methods of preparation
are vacuum drying and freeze-drying which yields a powder of the
active ingredient plus any additional desired ingredient from a
previously sterile-filtered solution thereof.
[0196] Oral compositions generally include an inert diluent or an
edible carrier. They can be enclosed in gelatin capsules or
compressed into tablets. For the purpose of oral therapeutic
administration, the active compound can be incorporated with
excipients and used in the form of tablets, troches, or capsules.
Oral compositions can also be prepared using a fluid carrier for
use as a mouthwash, wherein the compound in the fluid carrier is
applied orally and swished and expectorated or swallowed.
Pharmaceutically compatible binding agents, and/or adjuvant
materials can be included as part of the composition. The tablets,
pills, capsules, troches and the like can contain any of the
following ingredients, or compounds of a similar nature: a binder
such as microcrystalline cellulose, gum tragacanth or gelatin; an
excipient such as starch or lactose, a disintegrating agent such as
alginic acid, Primogel, or corn starch; a lubricant such as
magnesium stearate or Sterotes; a glidant such as colloidal silicon
dioxide; a sweetening agent such as sucrose or saccharin; or a
flavoring agent such as peppermint, methyl salicylate, or orange
flavoring.
[0197] For administration by inhalation, the compounds are
delivered in the form of an aerosol spray from pressured container
or dispenser which contains a suitable propellant, e.g., a gas such
as carbon dioxide, or a nebulizer.
[0198] Systemic administration can also be by transmucosal or
transdermal means. For transmucosal or transdermal administration,
penetrants appropriate to the barrier to be permeated are used in
the formulation. Such penetrants are generally known in the art,
and include, for example, for transmucosal administration,
detergents, bile salts, and fusidic acid derivatives. Transmucosal
administration can be accomplished through the use of nasal sprays
or suppositories. For transdermal administration, the active
compounds are formulated into ointments, salves, gels, or creams as
generally known in the art.
[0199] The compounds can also be prepared in the form of
suppositories (e.g., with conventional suppository bases such as
cocoa butter and other glycerides) or retention enemas for rectal
delivery.
[0200] In one embodiment, the binding molecules of the invention
are prepared with carriers that will protect the compound against
rapid elimination from the body, such as a controlled release
formulation, including implants and microencapsulated delivery
systems. Biodegradable, biocompatible polymers can be used, such as
ethylene vinyl acetate, polyanhydrides, polyglycolic acid,
collagen, polyorthoesters, and polylactic acid. Methods for
preparation of such formulations should be apparent to those
skilled in the art. The materials can also be obtained commercially
from Alza Corporation and Nova Pharmaceuticals, Inc. Liposomal
suspensions can also be used as pharmaceutically acceptable
carriers. These can be prepared according to methods known to those
skilled in the art, for example, as described in U.S. Pat. No.
4,522,811.
[0201] It is especially advantageous to formulate oral or
parenteral compositions in dosage unit form for ease of
administration and uniformity of dosage. Dosage unit form as used
herein refers to physically discrete units suited as unitary
dosages for the subject to be treated; each unit containing a
predetermined quantity of active compound calculated to produce the
desired therapeutic effect in association with the required
pharmaceutical carrier. The specification for the dosage unit forms
of the invention are dictated by and directly dependent on the
unique characteristics of the active compound and the particular
therapeutic effect to be achieved, and the limitations inherent in
the art of compounding such an active compound for the treatment of
individuals.
[0202] Toxicity and therapeutic efficacy of such compounds can be
determined by standard pharmaceutical procedures in cell cultures
or experimental animals, e.g., for determining the LD50 (the dose
lethal to 50% of the population) and the ED50 (the dose
therapeutically effective in 50% of the population). The dose ratio
between toxic and therapeutic effects is the therapeutic index and
it can be expressed as the ratio LD50/ED50. Compounds which exhibit
large therapeutic indices are preferred. While compounds that
exhibit toxic side effects can be used, care should be taken to
design a delivery system that targets such compounds to the site of
affected tissue in order to minimize potential damage to uninfected
cells and, thereby, reduce side effects.
[0203] The data obtained from the cell culture assays and animal
studies can be used in formulating a range of dosage for use in
humans. The dosage of such compounds lies preferably within a range
of circulating concentrations that include the ED50 with little or
no toxicity. The dosage may vary within this range depending upon
the dosage form employed and the route of administration utilized.
For any compound used in the method of the invention, the
therapeutically effective dose can be estimated initially from cell
culture assays. A dose can be formulated in animal models to
achieve a circulating plasma concentration range that includes the
IC50 (i.e., the concentration of the test compound which achieves a
half-maximal inhibition of symptoms) as determined in cell culture.
Such information can be used to more accurately determine useful
doses in humans. Levels in plasma can be measured, for example, by
high performance liquid chromatography.
[0204] The pharmaceutical compositions can be included in a
container, pack, or dispenser together with instructions for
administration.
VII. ADMINISTRATION OF BINDING MOLECULES OF THE INVENTION
[0205] Binding molecules of the invention are administered to
subjects in a biologically compatible form suitable for
pharmaceutical administration in vivo. By "biologically compatible
form suitable for administration in vivo" is meant a form of the
agent to be administered in which any toxic effects are outweighed
by the therapeutic effects of the binding molecule.
[0206] Administration of a therapeutically active amount of the
therapeutic compositions of the present invention is defined as an
amount effective, at dosages and for periods of time necessary to
achieve the desired result. For example, a therapeutically active
amount of binding molecule may vary according to factors such as
the disease state, age, sex, and weight of the individual, and the
ability of the binding molecule to elicit a desired response in the
individual. Dosage regimens can be adjusted to provide the optimum
therapeutic response. For example, several divided doses can be
administered daily or the dose can be proportionally reduced as
indicated by the exigencies of the therapeutic situation.
[0207] The pharmaceutical compositions of the invention may include
a "therapeutically effective amount" or a "prophylactically
effective amount" of a binding molecule of the invention. A
"therapeutically effective amount" refers to an amount effective,
at dosages and for periods of time necessary, to achieve the
desired therapeutic result. A therapeutically effective amount of
the binding molecule may vary according to factors such as the
disease state, age, sex, and weight of the individual, and the
ability of the binding molecule to elicit a desired response in the
individual. A therapeutically effective amount is also one in which
any toxic or detrimental effects of the binding molecule are
outweighed by the therapeutically beneficial effects. A
"prophylactically effective amount" refers to an amount effective,
at dosages and for periods of time necessary, to achieve the
desired prophylactic result. Typically, since a prophylactic dose
is used in subjects prior to or at an earlier stage of disease, the
prophylactically effective amount will be less than the
therapeutically effective amount.
[0208] Dosage regimens may be adjusted to provide the optimum
desired response (e.g., a therapeutic or prophylactic response).
For example, a single bolus may be administered, several divided
doses may be administered over time or the dose may be
proportionally reduced or increased as indicated by the exigencies
of the therapeutic situation. It is especially advantageous to
formulate parenteral compositions in dosage unit form for ease of
administration and uniformity of dosage. Dosage unit form as used
herein refers to physically discrete units suited as unitary
dosages for the mammalian subjects to be treated; each unit
containing a predetermined quantity of active compound calculated
to produce the desired therapeutic effect in association with the
required pharmaceutical carrier. The specification for the dosage
unit forms of the invention are dictated by and directly dependent
on (a) the unique characteristics of the active compound and the
particular therapeutic or prophylactic effect to be achieved, and
(b) the limitations inherent in the art of compounding such an
active compound for the treatment of sensitivity in
individuals.
[0209] An exemplary, non-limiting range for a therapeutically or
prophylactically effective amount of a binding molecule of the
invention is 0.1-20 mg/kg, more preferably 1.0-10 mg/kg. It is to
be noted that dosage values may vary with the type and severity of
the condition to be alleviated. It is to be further understood that
for any particular subject, specific dosage regimens should be
adjusted over time according to the individual need and the
professional judgment of the person administering or supervising
the administration of the compositions, and that dosage ranges set
forth herein are exemplary only and are not intended to limit the
scope or practice of the claimed composition.
[0210] The binding molecule can be administered in a convenient
manner such as by injection (subcutaneous, intravenous, etc.), oral
administration, inhalation, transdermal application, or rectal
administration. Depending on the route of administration, the
active compound can be coated in a material to protect the compound
from the action of enzymes, acids and other natural conditions
which may inactivate the compound. For example, to administer the
agent by other than parenteral administration, it may be desirable
to coat, or co-administer the agent with, a material to prevent its
inactivation.
[0211] The binding molecules of the present invention can be
administered by a variety of methods known in the art, although for
many therapeutic applications, the preferred route/mode of
administration is intravenous injection or infusion. As will be
appreciated by the skilled artisan, the route and/or mode of
administration will vary depending upon the desired results. In
certain embodiments the active compound may be prepared with a
carrier that will protect the compound against rapid release, such
as a controlled release formulation, including implants,
transdermal patches, and microencapsulated delivery systems.
Biodegradable, biocompatible polymers can be used, such as ethylene
vinyl acetate, polyanhydrides, polyglycolic acid, collagen,
polyorthoesters, and polylactic acid. Many methods for the
preparation of such formulations are patented or generally known to
those skilled in the art. See, e.g., Sustained and Controlled
Release Drug Delivery Systems, J. R. Robinson, ed., Marcel Dekker,
Inc., New York, 1978.
[0212] In certain embodiments, a binding molecule of the invention
may be orally administered, for example, with an inert diluent or
an assimilable edible carrier. The compound (and other ingredients,
if desired) may also be enclosed in a hard or soft shell gelatin
capsule, compressed into tablets, or incorporated directly into the
subject's diet. For oral therapeutic administration, the compounds
may be incorporated with excipients and used in the form of
ingestible tablets, buccal tablets, troches, capsules, elixirs,
suspensions, syrups, wafers, and the like. To administer a compound
of the invention by other than parenteral administration, it may be
necessary to coat the compound with, or co-administer the compound
with, a material to prevent its inactivation.
[0213] Binding molecules can be co-administered with enzyme
inhibitors or in an appropriate carrier such as liposomes.
Pharmaceutically acceptable diluents include saline and aqueous
buffer solutions. Adjuvant is used in its broadest sense and
includes any immune inhibiting compound. Adjuvants contemplated
herein include resorcinols, non-ionic surfactants such as
polyoxyethylene oleyl ether and n-hexadecyl polyethylene ether.
Enzyme inhibitors include pancreatic trypsin inhibitor,
diisopropylfluorophosphate (DEEP) and trasylol. Liposomes include
water-in-oil-in-water emulsions as well as conventional liposomes
(Sterna et al. (1984) J. Neuroimmunol. 7:27).
[0214] The active compound may also be administered parenterally or
intraperitoneally. Dispersions can also be prepared in glycerol,
liquid polyethylene glycols, and mixtures thereof and in oils.
Under ordinary conditions of storage and use, these preparations
may contain a preservative to prevent the growth of
microorganisms.
[0215] When the active compound is suitably protected, as described
above, the binding molecule can be orally administered, for
example, with an inert diluent or an assimilable edible
carrier.
[0216] Supplementary active compounds can also be incorporated into
the compositions. In certain embodiments, a binding molecule of the
invention is coformulated with and/or coadministered with one or
more additional therapeutic agents that are useful for treating
disorders in which ILT3 activity is detrimental. For example, an
anti-ILT3 binding molecule of the invention may be coformulated
and/or coadministered with one or more additional binding molecules
that bind other targets e.g., binding molecules that bind other
cytokines or that bind cell surface molecules. Such combination
therapies may advantageously utilize lower dosages of the
administered therapeutic agents, thus avoiding possible toxicities
or complications associated with the various monotherapies.
[0217] In one embodiment, an agent of the invention is an antibody.
As defined herein, a therapeutically effective amount of antibody
(i.e., an effective dosage) ranges from about 0.001 to 30.0 mg/kg
body weight, preferably about 0.01 to 25.0 mg/kg body weight, more
preferably about 0.1 to 20 mg/kg body weight, and even more
preferably about 1.0 to 10 mg/kg, 2 to 9 mg/kg, 3 to 8 mg/kg, 4 to
7 mg/kg, or 5 to 6 mg/kg body weight. The skilled artisan will
appreciate that certain factors may influence the dosage required
to effectively treat a subject, including but not limited to the
severity of the disease or disorder, previous treatments, the
general health and/or age of the subject, and other diseases
present. Moreover, treatment of a subject with a therapeutically
effective amount of an antibody can include a single treatment or,
preferably, can include a series of treatments. In a preferred
example, a subject is treated with antibody in the range of between
about 0.1 to 20 mg/kg body weight, one time per week for between
about 1 to 10 weeks, preferably between 2 to 8 weeks, more
preferably between about 3 to 7 weeks, and even more preferably for
about 4, 5, or 6 weeks. It will also be appreciated that the
effective dosage of antibody used for treatment may increase or
decrease over the course of a particular treatment. Changes in
dosage may result from the results of diagnostic assays.
[0218] This invention is further illustrated by the following
examples, which should not be construed as limiting. The contents
of all references, patents and published patent applications cited
throughout this application, as well as the Figures, are
incorporated herein by reference.
EXAMPLES
Example 1
Isolation and Purification of 9B11
[0219] The gene encoding ILT3 was cloned and used to immunize mice
for generation of anti-ILT3 monoclonal antibodies. The 9B11
antibody is an lgG1 antibody.
[0220] The 9B11 antibody was purified as follows: [0221] 1. Washed
20 ml Protein G (Pharmacia HR 10/30) with 5CV of dPBS [0222] 2.
Loaded IL (run 1) or 2 L (run 2) of mILT3 supernatant [0223] 3.
Washed with 10 CV of dPBS [0224] 4. Eluted with 100 mM Citrate, pH
2.8 directly into 1 M Tris (20-25% v: v) [0225] 5. Stripped with
100 mM Citrate, pH 2.8, 0.3 M NaCl
[0226] The 9B11 antibody was shown to cross-react to cynomolgus
monkey and baboon monocytes.
Example 2
Dendritic Cells Treated In Vitro with 9B11 have Lower Expression of
Cell Surface Co-Stimulatory Molecules
[0227] MDDC were derived in the presence of either IL-10 or
anti-ILT3 mAbs (5A1, 9B11, or 9G3). Immature and mature dendritic
cells were used as controls. In addition MDDC were also derived in
the presence of TRX1 as a negative control. The results are shown
in FIG. 1 which demonstrates that MDDC differentiated in the
presence of 9B11 have lower expression of cell surface
co-stimulatory molecules, such as CD86, CD80, CD83 and HLA-DR as
measured by flow cytometry.
[0228] As shown above, cells that are differentiated in the
presence of 9B11 demonstrate a decreased cell surface expression
pattern of costimulatory molecules. Therefore, it is likely that
these cells will be unable to generate an allogenic response of T
cells in a mixed lymphocyte reaction. As shown in FIG. 2, MDDCs
differentiated in the presence of 9B11 result in anergic T cell
stimulation in a mixed lymphocyte reaction. DCs were added at
either 500 or 1000 cells to 2.times.10.sup.5 T cells. The cells
were stimulated for 3 days prior to the addition of
.sup.3H-thymidine.
[0229] Furthermore, MDDCs derived in the presence of 9B11 are
unable to produce IL-12, TNF-.alpha. or IL-1.alpha. when stimulated
with LPS. Monocytes were treated with GM-CSF and IL-4 on days 0 and
3. IL-10 or ILT3 (9B11; 10 .mu.g/ml) was added on day 0 and 3. On
day 5 cells were washed and LPS (5 .mu.g/ml) and were added to the
mature cultures. Supernatant fluid was harvested 48 hours after the
addition of LPS. Cytokines were measured by ELISA (Pierce Endogen).
Two different monocyte donors were used (donor #26 and donor #5)
(FIG. 3).
[0230] Freshly isolated blood dendritic cells incubated with 9B11
were unable to fully upregulate the expression of co-stimulatory
molecules when a cocktail of cytokines (IL-6, IL-1 beta, TNF-alpha,
and PGE) was used to mature the cells. Freshly isolated blood
dendritic cells were incubated with 9B11 24 hours prior to the
addition of the maturation cocktail. The cells were phenotyped 48
hours later to determine if treatment with 9B11 results in
decreased expression of co-stimulatory molecules. As shown in FIG.
4, treatment of monocytes with 9B11 resulted in decreased
expression of both CD86 and HLA-DR.
[0231] 9B11 also inhibits Ca.sup.+2 flux in monocytes induced by
the activating immunoreceptor tyrosine-based activation motif
(ITAM), CD32. Monocytes were treated with anti-CD32 followed by a
goat anti-mouse IgG, IgM to cross-link, which will result in
significant Ca+2 flux. However, incubation with 9B11 prior to the
addition of CD32 and cross-linking resulted in decreased Ca+2 flux
by these monocytes. This was specific for the ILT3 antibodies as an
isotype control (mouse IgG1) resulted in less inhibition of Ca+2
flux (FIG. 5).
[0232] Intracellular calcium flux studies using flow cytometry
analysis was performed as described by Rabin, et al. (J. Immunol.
(1999) 162:3840-3850). Briefly, monocyte-derived dendritic cells
(2.times.10.sup.7) were suspended in HBSS-HEPES (HBSS supplemented
with 10 mM HEPES, Ca.sup.++, Mg.sup.++, and 1% fetal calf serum).
Indo-1 and pleuronic detergent (Molecular Probes, Eugene, Oreg.)
were added at final concentrations of 5 .mu.M and 300 .mu.g/mL,
respectively. The cell suspension was incubated at 30.degree. C.
for 45 minutes with gentle agitation. Cells were then washed twice
with the HBSS-HEPES, stained with anti-CD1a, and washed again.
Calcium flux for CD1a+ dendritic cells was performed using a
FACSVantage flow cytometer (Becton Dickinson) equipped with an
argon laser tuned to 488 nM and a krypton laser tuned to 360 nM.
Indo-1 fluorescence was analyzed at 390/20 nM and 530/20 nM for
bound and free calcium, respectively. Before stimulation, cell
suspensions were warmed at 37.degree. C. for 3 minutes. The
CD1a.sup.+ cell population was gated, and baseline fluorescent
ratios were collected for 30 seconds. Cells were then stimulated
with either fMLP (10.sup.-5 M), T-20 peptide (10.sup.-5 M), or
F-peptide (10.sup.-5 M) followed by fMLP (10.sup.-8 M). Collections
continued until calcium flux returned to basal levels. Changes in
Indo-1 fluorescence were expressed as the ratio of bound to free
intracellular calcium, and scattergrams represented the entire
CD1a+ cell population at the time of stimulation. Data analysis was
performed using Flowjo software (Tree Star, San Carlos,
Calif.).
Example 3
Dendritic Cells Treated In Vitro with 9B11 have Higher Expression
Of Cell Surface Inhibitory Receptors
[0233] 9B11 was also shown to upmodulate the expression of
inhibitory receptors, e.g., receptors that generate a negative
inhibitory in a cell. Monocytes were isolated using magnetic bead
separation technology. The monocytes were treated every other day
with 9B11, GM-CSF and IL4. On day 5, a portion of these cells were
matured using IL1b, IL6, TNF.alpha., and PGE2. Cells were incubated
for a further seven days and then RNA was prepared from immature
dendritic cells (iDC) (cells not treated with IL1b, IL6,
TNF.alpha., and PGE2) and mature dendritic cells (mDC). The RNA was
used to generate cDNA for QPCR. The data is expressed relative to
the housekeeping gene 18sRNA. A mouse IgG1 was used as an isotype
control and both antibodies were used at a concentration of 10
.mu.g/ml.
[0234] The results show that the culturing of monocytes such that
they develop into dendritic cells in the presence of an ILT3
binding molecule causes some inhibitory molecules to upregulate.
IDO (indolamine) is extremely overexpressed in ILT3 binding
molecule treated cells. This molecule is associated with the
generation of tolerance. Tolergenic dendritic cells have also been
shown to express CD200R and have been shown to be tolergenic in
vivo. CD200R and CD40L were also elevated in ILT3 binding molecule
treated cells compared to isotype controls, and although 9B11
treatment increased expression of FCGRIIb and FCGRIIa, all of the
samples had equal expression of FCGRIIa compared to FCGRIIb. The
effect is specific to immature DC, as the expression of the same
receptors on mature DC is no different from isotype control.
Example 4
In Vivo Characterization of 9B11
[0235] Rhesus macaques were immunized with 9B11 during the priming
phase e.g., at days -1, 0, and +1, of a vaccination protocol using
Mycobacterium tuberculosis as antigen. Subsequent challenge with
antigen at day +18 resulted in exacerbation of a cutaneous DTH
response. These results indicate that 9B11 acts as an adjuvant
useful in enhancing immune responses (e.g., in the case of
infection and or malignancy) with less associated morbidity
compared to existing adjuvants.
Example 5
Preparation of a Chimeric Anti-ILT3 Binding Molecule
[0236] The 9B11 variable light chain region was grafted to a human
light chain constant region using conventional molecular biological
techniques. The IgG1 light chain constant region was used. The
amino acid sequence of the complete chimeric light chain GITR
binding molecule is shown below:
TABLE-US-00001 (SEQ ID NO: 25)
DIVLTQSPATLSVTPGDSVSLSCRASQGLTNDLHWYQQKPHESPRLLIKY
ASQSISGIPSRFSGSGSGTDFTLTINSVETEDFGVFFCQQSNSWPFTFGA
GTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV
DNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG
LSSPVTKSFNRGEC.
[0237] The 9B11 variable heavy chain was also grafted to a human
heavy chain constant region using conventional molecular biological
techniques. The IgG1 heavy chain constant region was used. The
amino acid sequence of the complete chimeric heavy chain ILT3
binding molecule is shown below (also referred to as "Gly"):
TABLE-US-00002 (SEQ ID NO: 26)
EVKLVESGGDLVKPGGSLKLSCAASGFAFSSYDMSWVRQTPEKRLEWVAT
ISSSGSYTYYPDSVKGRFTISRDNARNTLYLQMSSLRSEDTALYYCERLW
GAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICN
VNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTL
MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR
VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL
PPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD
GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK.
[0238] Since the amino acid sequence NX(S/T) is a putative
consensus sequence for a glycosylation site which may affect the
production of the binding molecule, and lgG1 constant region of the
9B11 heavy chain has the sequence NST, a second version of the
heavy chain constant region was prepared to conservatively
substitute a glutamine for an asparagine at amino acid residue 296
(bolded and underlined above) of SEQ ID NO:27. Accordingly, a
second human constant region was grafted to the 9B11 heavy chain
variable region. The amino acid sequence of the complete chimeric
heavy chain ILT3 binding molecule is shown below (also referred to
as "Agly"):
TABLE-US-00003 (SEQ ID NO: 27)
EVKLVESGGDLVKPGGSLKLSCAASGFAFSSYDMSWVRQTPEKRLEWVAT
ISSSGSYTYYPDSVKGRFTISRDNARNTLYLQMSSLRSEDTALYYCERLW
GAMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP
EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICN
VNHKPSNTKVDKKVEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTL
MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYASTYR
VVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTL
PPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSD
GSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK.
EQUIVALENTS
[0239] Those skilled in the art will recognize, or be able to
ascertain using no more than routine experimentation, many
equivalents to the specific embodiments of the invention described
herein. Such equivalents are intended to be encompassed by the
following claims.
Sequence CWU 1
1
301135PRTArtificial SequenceDescription of Artificial Sequence
Synthetic protein sequence 1Met Glu Phe Gly Leu Ser Leu Val Phe Leu
Val Leu Ile Leu Lys Gly 1 5 10 15 Val Gln Cys Glu Val Lys Leu Val
Glu Ser Gly Gly Asp Leu Val Lys 20 25 30 Pro Gly Gly Ser Leu Lys
Leu Ser Cys Ala Ala Ser Gly Phe Ala Phe 35 40 45 Ser Ser Tyr Asp
Met Ser Trp Val Arg Gln Thr Pro Glu Lys Arg Leu 50 55 60 Glu Trp
Val Ala Thr Ile Ser Ser Ser Gly Ser Tyr Thr Tyr Tyr Pro 65 70 75 80
Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Arg Asn 85
90 95 Thr Leu Tyr Leu Gln Met Ser Ser Leu Arg Ser Glu Asp Thr Ala
Leu 100 105 110 Tyr Tyr Cys Glu Arg Leu Trp Gly Ala Met Asp Tyr Trp
Gly Gln Gly 115 120 125 Thr Leu Val Thr Val Ser Ser 130 135
2127PRTArtificial SequenceDescription of Artificial Sequence
Synthetic protein sequence 2Met Glu Thr Asp Thr Ile Leu Leu Trp Val
Leu Leu Leu Trp Val Pro 1 5 10 15 Gly Ser Thr Gly Asp Ile Val Leu
Thr Gln Ser Pro Ala Thr Leu Ser 20 25 30 Val Thr Pro Gly Asp Ser
Val Ser Leu Ser Cys Arg Ala Ser Gln Gly 35 40 45 Leu Thr Asn Asp
Leu His Trp Tyr Gln Gln Lys Pro His Glu Ser Pro 50 55 60 Arg Leu
Leu Ile Lys Tyr Ala Ser Gln Ser Ile Ser Gly Ile Pro Ser 65 70 75 80
Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Asn 85
90 95 Ser Val Glu Thr Glu Asp Phe Gly Val Phe Phe Cys Gln Gln Ser
Asn 100 105 110 Ser Trp Pro Phe Thr Phe Gly Ala Gly Thr Lys Leu Glu
Ile Lys 115 120 125 310PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 3Gly Phe Ala Phe Ser Ser Tyr
Asp Met Ser 1 5 10 417PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 4Thr Ile Ser Ser Ser Gly Ser
Tyr Thr Tyr Tyr Pro Asp Ser Val Lys 1 5 10 15 Gly 57PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 5Leu
Trp Gly Ala Met Asp Tyr 1 5 611PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 6Arg Ala Ser Gln Gly Leu Thr
Asn Asp Leu His 1 5 10 77PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 7Tyr Ala Ser Gln Ser Ile Ser
1 5 89PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide 8Gln Gln Ser Asn Ser Trp Pro Phe Thr 1 5
9405DNAArtificial SequenceDescription of Artificial Sequence
Synthetic nucleotide sequence 9atggagttcg ggttaagctt ggttttcctt
gtcctaattt taaaaggtgt ccagtgtgaa 60gtgaagctgg tggagtctgg gggagactta
gtgaagcctg gggggtccct gaaactctcc 120tgtgcagcct ctggattcgc
tttcagtagc tatgacatgt cttgggttcg ccagactccg 180gagaagaggc
tggaatgggt cgcaaccatt agtagtagtg gtagttacac ctactaccca
240gacagtgtga agggccgatt caccatctcc agagacaatg ccaggaacac
cctgtacctg 300caaatgagca gtctgaggtc tgaggacacg gccttgtatt
actgtgaaag actatggggg 360gctatggact actggggcca agggacacta
gtcacagtct cctca 40510383DNAArtificial SequenceDescription of
Artificial Sequence Synthetic nucleotide sequence 10atggagacag
acacaatcct gctatgggtg ctgctgctct gggttccagg ctccaccggt 60gacatcgtgc
tgacccagtc tccagccacc ctgtctgtga ctccaggaga tagcgtcagt
120ctttcctgca gggccagcca aggtcttacc aacgacctac actggtatca
acaaaaacca 180catgagtctc caaggcttct catcaagtat gcttcccagt
ccatctctgg gatcccctcc 240aggttcagtg gcagtggatc agggacagat
ttcactctca ctatcaacag tgtggagact 300gaagattttg gagtgttttt
ctgtcaacag agtaacagct ggccattcac gttcggagct 360gggaccaagc
tggaaatcaa acg 3831130DNAArtificial SequenceDescription of
Artificial Sequence Synthetic oligonucleotide 11ggattcgctt
tcagtagcta tgacatgtct 301251DNAArtificial SequenceDescription of
Artificial Sequence Synthetic oligonucleotide 12accattagta
gtagtggtag ttacacctac tacccagaca gtgtgaaggg c 511321DNAArtificial
SequenceDescription of Artificial Sequence Synthetic
oligonucleotide 13ctatgggggg ctatggacta c 211433DNAArtificial
SequenceDescription of Artificial Sequence Synthetic
oligonucleotide 14agggccagcc aaggtcttac caacgaccta cac
331521DNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 15tatgcttccc agtccatctc t
211627DNAArtificial SequenceDescription of Artificial Sequence
Synthetic oligonucleotide 16caacagagta acagctggcc attcacg
27175354DNAHomo sapiens 17atgatcccca ccttcacggc tctgctctgc
ctcggtgaga tttaaagagg gggaggggag 60acccgagtct tggaggaaat ttgcctcaca
gccaggccct ggttctttag gagactcaaa 120aatctcaggg tagccgggcg
cggtggctca cgcctgtaat cccagcactt tgggaggccg 180aggcgggcgg
atcacgaggt caggagatcg agaccatcct ggctaacacg gtgaaaccct
240gtctctacta aaaatacaaa aaattagccg ggggtggttg caggcgcctg
tggtcccagc 300cactcgggag gctgaggcag gagaatggcg tgaacccggg
aggcggagct tgcagtgagc 360caagatcgca ccaccgcact ccagcctggg
tgacagcgag actccgtctc aaaaaaaaaa 420aaaaaaaaaa aaaaaaaaaa
atctcagggt aaaaaaagga cctgctcagg cttccggggc 480aaatccctca
cagggaactc tcttccaggg ctgagtctgg gccccaggac ccacatgcag
540gcaggtgatt ctgtccccag ctgtcccagg tccctcctcc tcactgggac
aaggggccac 600ccatgggcag ctgggggagg agacagcagt tctgggtgac
tgatgaggat gacggggggg 660tcctggggct gagagctggg atctgagggc
tgaggaaggt cttgggatcc agcctctgat 720tttcttccag ggcccctccc
caaacccacc ctctgggctg agccaggctc tgtgatcagc 780tgggggaact
ctgtgaccat ctggtgtcag gggaccctgg aggctcggga gtaccgtctg
840gataaagagg aaagcccagc accctgggac agacagaacc cactggagcc
caagaacaag 900gccagattct ccatcccatc catgacagag gactatgcag
ggagataccg ctgttactat 960cgcagccctg taggctggtc acagcccagt
gaccccctgg agctggtgat gacaggtgag 1020aggacactca ggggtcccag
ccccaggctc tgccctcagg aagggggtca gctctcaggg 1080gcatctccct
ctcacagccc agccctgggg atgatgtggg aggtgggagc cccatttaac
1140acggtgcctc cttctctcct aggagcctac agtaaaccca ccctttcagc
cctgccgagt 1200cctcttgtga cctcaggaaa gagcgtgacc ctgctgtgtc
agtcacggag cccaatggac 1260actttccttc tgatcaagga gcgggcagcc
catcccctac tgcatctgag atcagagcac 1320ggagctcagc agcaccaggc
tgaattcccc atgagtcctg tgacctcagt gcacgggggg 1380acctacaggt
gcttcagctc acacggcttc tcccactacc tgctgtcaca ccccagtgac
1440cccctggagc tcatagtctc aggtgaggct cctgaccctg tcctctctga
gctcagtggc 1500tccgttcatg ccctgctgcc aggagagctc tgggcaggga
tggagggaga ggggctcagc 1560cagtggggga ctcagccctc agaggggagg
aggacaacag gggccctccc aggcatgccc 1620atgctcttct ccctcaccta
gggtccagaa ggtgccaggt ggacagagaa atggtccttg 1680ggaagctgca
gggcagatat agggagaggt tcaatttgat gtggagaccc aagggcaacc
1740ccagactctc accctcctct tgtccttcta cccaggatcc ttggagggtc
ccaggccctc 1800acccacaagg tccgtctcaa cagctggtga gtctcagagg
cctctgtcca gagagtttcc 1860aaagcccgag gcctgtctca agacatgctc
agtggatcta agtcctcgtt ccaattctca 1920gctgggcttg cttccacggg
tgtgggagtc gggcagcgac ttgggaggca ccacaggctc 1980ccaaggccct
gaggctgggc tggtgagggg tgagggggtc aaggctgaag gagatgttgc
2040ggggagaaac cgacctgatg cggggagcag ggcagcccca gccctcacat
ccctgttcta 2100acccagcagg ccctgaggac cagcccctca tgcctacagg
gtcagtcccc cacagtggtg 2160agtgaggggc tctgagtggg aggtgggcag
ggtctagggg agccaagggt gggttctgtc 2220ctaggttcag gctcctctgg
aggtggtgat gtggacaggc ccctcccctg catgggcctc 2280agtttctcca
agtgtaaagg agagaggcct gtgggtggga aagttccttt cagctctgac
2340tcccagctgt gccctcctgg gagaggaggc ctcccaggga acctcccaga
cccgattccg 2400caggggcctg tccggtccca cctgcagcag agacggtgac
ctggggcagg ggaggggagc 2460agggcggtgg ttcaagacag tcaggctctt
tccctgcaac tctggggctt ggctctggtg 2520caggaacaag ggctgcagct
cagactcccg ggtttccttc ccagctctgc cgcttcctgg 2580ctggaggggt
ctggggcagg cgattcccct ctctgagcct cagtttgtgc atctgtgaaa
2640tgggtggaga gagggtggca atctcaggtt gcacaactgc tgtgagggtt
ggaggtaatg 2700aaagaaagac ccagcacaca cagtaggtgc acacacagta
ggtgtgcaca tcaatgacat 2760catccccatt cctgatgtca tcacgcccaa
ggtctgagaa ggcactggga ggtactgatc 2820ggggtcttgg tggtctccat
cctgcttctc tccctcctcc tcttcctcct cctccaacac 2880tggcgtcagg
gaaaacacag gacattgggt aagtaggaaa ttgggggacc cgtgggctga
2940tggagggtgg gctcagggca ccagccaaag ggactccaga taggagaggt
catcttagaa 3000actctgctcc agaaattccc agtgagaaaa tctagaaaga
agaaaatgaa tgagggagta 3060atggaagtgc tttattcttt cggtttttct
aaacttagaa agtatttaaa acatccttgc 3120aagtgtattt tcaggtttcc
tttcctcttg acttgcatgt gcaaggcagg tggttctaac 3180gttcccagag
ctgagactct gtccatcttc ccccagccca gagacaggct gatttccaac
3240gtcctccagg ggctgccgag ccagagccca aggacggggg cctacagagg
aggtaattct 3300gcccaaagac ctcagactcc cacccatccc aacagccacc
tcactgtccc cttacactcc 3360cgtatcctcc cccaggtcca gcccagctgc
tgacgtccag ggagaaaact tctgtgagtg 3420agaggcagag aaggtgcacc
tggggtggag ctgggggtcc caaaatttca atagcaatgg 3480gggcaggagc
acaggctagg attggtcagg gactcaggga gaagtggtct gaacccacat
3540tgtgggacct cggggacatc gcagcccctc cctgcgttgc agtggcacta
atgggaacag 3600ggcagggacc agcaggaatg agaggtccca gggaaccttc
ccaggagatg aaccccttgc 3660tctactccag caggtgctgc cgtgaagaac
acacagcctg aggacggggt ggaaatggac 3720actcgggtga gaacccgccc
ctgtccccag caccaaaggc ctcctggtgc cagatctaat 3780cctgcaggac
ttctctgtcc tccttccccc ggctctcagc atcgtcacgg tggacccctc
3840cttgtccagc acgctgcctc ctgcctgctg ggacctcact ctctcctgct
gtcctgggac 3900ctcatgggcc tcctcccggg tccccttcct gctcctcatc
ctctgtttgg ccatctggtt 3960gttagagagc tccccaggcc tcaggaggat
gacgaataaa tgaaccactc cagtcccctg 4020ggctcccctt cattcattca
tctagtgagt gttcccaggg agctcactgt ggatggggct 4080ccccatggga
gctgcagaca cagcagggag caaagccgcc cccgcctcct gagctcacct
4140cgtggtggga gacaaaatgc aaataaatgc atcgtgtcca ggagtgcaac
gtgctgtaag 4200gaacataaac caggtaaagg gcagagagtg tggggcagtg
gggccagtct gaatggaaag 4260ggagggctgt ctgctcagct gtcatctgag
aagcctggac ggagagggcc acgtgatcct 4320ctaatggacg agcccctgca
ggcagaggaa acagccgtgc aaaggccccg aggcagcagc 4380gagctcttgc
aggaaggccg cgtgaggctg cagccaaatg ggcaaggtca gagtgaggag
4440cagagaccag aaccacaggg agggagcggc cagaccctcc acggccttag
ggcatccctg 4500agattccgtc aggaaaggga tgtaatcgga tcaccctggg
aacagtgggg aaaattgact 4560ccagggagtc aggaggattc aaggacaccc
cccaccactg tctctctcca gcagagccca 4620cacgatgaag acccccaggc
agtgacgtat gccgaggtga aacactccag acctaggaga 4680gaaatggcct
ctcctccctc cccactgtct ggggaattcc tggacacaaa ggacagacag
4740gcagaagagg acagacagat ggacactgag gtgagtcctt tcctctccag
gcccccaggc 4800ctcccccacc cccaccacgt tccttccctc tcactctccc
ccgctgcagg ctgctgcatc 4860tgaagccccc caggatgtga cctacgccca
gctgcacagc tttaccctca gacagaaggc 4920aactgagcct cctccatccc
aggaaggggc ctctccagct gagcccagtg tctatgccac 4980tctggccatc
cactaatcca ggggggaccc agaccccaca agccatggag actcaggacc
5040ccagaaggca tggaagctgc ctccagtaga catcactgaa ccccagccag
cccagacccc 5100tgacacagac cactagaaga ttccgggaac gttgggagtc
acctgattct gcaaagataa 5160ataatatccc tgcattatca aaataaagta
gcagacctct caattcacaa tgagttaact 5220gataaaacaa aacagaagtc
agacaatgtt ttaaattgaa tgatcatgta aatattacac 5280atcaaaccaa
tgacatggga aaatgggagc ttctatgcag gcaggacaaa aaatagaggg
5340ggatccacta gttc 535418434PRTHomo sapiens 18Met Ile Pro Thr Phe
Thr Ala Leu Leu Cys Leu Gly Leu Ser Leu Gly 1 5 10 15 Pro Arg Thr
His Met Gln Ala Gly Pro Leu Pro Lys Pro Thr Leu Trp 20 25 30 Ala
Glu Pro Gly Ser Val Ile Ser Trp Gly Asn Ser Val Thr Ile Trp 35 40
45 Cys Gln Gly Thr Leu Glu Ala Arg Glu Tyr Arg Leu Asp Lys Glu Glu
50 55 60 Ser Pro Ala Pro Trp Asp Arg Gln Asn Pro Leu Glu Pro Lys
Asn Lys 65 70 75 80 Ala Arg Phe Ser Ile Pro Ser Met Thr Glu Asp Tyr
Ala Gly Arg Tyr 85 90 95 Arg Cys Tyr Tyr Arg Ser Pro Val Gly Trp
Ser Gln Pro Ser Asp Pro 100 105 110 Leu Glu Leu Val Met Thr Gly Ala
Tyr Ser Lys Pro Thr Leu Ser Ala 115 120 125 Leu Pro Ser Pro Leu Val
Thr Ser Gly Lys Ser Val Thr Leu Leu Cys 130 135 140 Gln Ser Arg Ser
Pro Met Asp Thr Phe Leu Leu Ile Lys Glu Arg Ala 145 150 155 160 Ala
His Pro Leu Leu His Leu Arg Ser Glu His Gly Ala Gln Gln His 165 170
175 Gln Ala Glu Phe Pro Met Ser Pro Val Thr Ser Val His Gly Gly Thr
180 185 190 Tyr Arg Cys Phe Ser Ser His Gly Phe Ser His Tyr Leu Leu
Ser His 195 200 205 Pro Ser Asp Pro Leu Glu Leu Ile Val Ser Gly Ser
Leu Glu Gly Pro 210 215 220 Arg Pro Ser Pro Thr Arg Ser Val Ser Thr
Ala Ala Gly Pro Glu Asp 225 230 235 240 Gln Pro Leu Met Pro Thr Gly
Ser Val Pro His Ser Gly Leu Arg Arg 245 250 255 His Trp Glu Val Leu
Ile Gly Val Leu Val Val Ser Ile Leu Leu Leu 260 265 270 Ser Leu Leu
Leu Phe Leu Leu Leu Gln His Trp Arg Gln Gly Lys His 275 280 285 Arg
Thr Leu Ala Gln Arg Gln Ala Asp Phe Gln Arg Pro Pro Gly Ala 290 295
300 Ala Glu Pro Glu Pro Lys Asp Gly Gly Leu Gln Arg Arg Ser Ser Pro
305 310 315 320 Ala Ala Asp Val Gln Gly Glu Asn Phe Cys Ala Ala Val
Lys Asn Thr 325 330 335 Gln Pro Glu Asp Gly Val Glu Met Asp Thr Arg
Gln Ser Pro His Asp 340 345 350 Glu Asp Pro Gln Ala Val Thr Tyr Ala
Glu Val Lys His Ser Arg Pro 355 360 365 Arg Arg Glu Met Ala Ser Pro
Pro Ser Pro Leu Ser Gly Glu Phe Leu 370 375 380 Asp Thr Lys Asp Arg
Gln Ala Glu Glu Asp Arg Gln Met Asp Thr Glu 385 390 395 400 Ala Ala
Ala Ser Glu Ala Pro Gln Asp Val Thr Tyr Ala Gln Leu His 405 410 415
Ser Phe Thr Leu Arg Gln Lys Ala Thr Glu Pro Pro Pro Ser Gln Glu 420
425 430 Gly Ala 1910PRTHomo sapiens 19Gly Gln Gly Thr Lys Leu Glu
Ile Lys Arg 1 5 10 2015PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 20Gly Gly Gly Gly Ser Gly Gly
Gly Gly Ser Gly Gly Gly Gly Ser 1 5 10 15 2120PRTArtificial
SequenceDescription of Artificial Sequence Synthetic peptide 21Met
Glu Thr Asp Thr Ile Leu Leu Trp Val Leu Leu Leu Trp Val Pro 1 5 10
15 Gly Ser Thr Gly 20 2219PRTArtificial SequenceDescription of
Artificial Sequence Synthetic peptide 22Met Glu Phe Gly Leu Ser Leu
Val Phe Leu Val Leu Ile Leu Lys Gly 1 5 10 15 Val Gln Cys
23105PRTMus sp. 23Ala Asp Ala Ala Pro Thr Val Ser Ile Phe Pro Pro
Ser Ser Glu Gln 1 5 10 15 Leu Thr Ser Gly Gly Ala Ser Val Val Cys
Phe Leu Asn Asn Phe Tyr 20 25 30 Pro Lys Asp Ile Asn Val Lys Trp
Lys Ile Asp Gly Ser Glu Arg Gln 35 40 45 Asn Gly Val Leu Asn Ser
Trp Thr Asp Gln Asp Ser Lys Asp Ser Thr 50 55 60 Tyr Ser Met Ser
Ser Thr Leu Thr Leu Thr Lys Asp Glu Tyr Glu Arg 65 70 75 80 His Asn
Ser Tyr Thr Cys Glu Ala Thr His Lys Thr Ser Thr Ser Pro 85 90 95
Ile Val Lys Ser Phe Asn Arg Asn Glu 100 105 24334PRTMus sp. 24Ala
Lys Thr Thr Pro Pro Ser Val Tyr Pro Leu Ala Pro Gly Cys Gly 1 5 10
15 Asp Thr Thr Gly Ser Ser Val Thr Leu Gly Cys Leu Val Lys Gly Tyr
20 25 30 Phe Pro Glu Ser Val Thr Val Thr Trp Asn Ser Gly Ser Leu
Ser Ser 35 40 45 Ser Val His Thr Phe Pro Ala Leu Leu Gln Ser Gly
Leu Tyr Thr Met 50 55 60 Ser Ser Ser Val Thr Val Pro Ser Ser Thr
Trp Pro Ser Gln Thr Val 65 70 75 80 Thr Cys Ser Val Ala His Pro Ala
Ser Ser Thr Thr Val Asp Lys Lys 85 90 95 Leu Glu Pro Ser Gly Pro
Ile Ser Thr Ile Asn Pro Cys Pro Pro Cys 100 105 110 Lys Glu Cys Lys
Cys Pro Ala Pro Asn Leu Glu Gly Gly Pro Ser Val 115
120 125 Phe Ile Phe Pro Pro Asn Ile Lys Asp Val Leu Met Ile Ser Leu
Thr 130 135 140 Pro Lys Val Thr Cys Val Val Val Asp Val Ser Glu Asp
Asp Pro Asp 145 150 155 160 Val Gln Ile Ser Trp Phe Val Asn Asn Val
Glu Val His Thr Ala Gln 165 170 175 Thr Gln Thr His Arg Glu Asp Tyr
Asn Ser Thr Ile Arg Val Val Ser 180 185 190 Thr Leu Pro Ile Gln His
Gln Asp Trp Met Ser Gly Lys Glu Phe Lys 195 200 205 Cys Lys Val Asn
Asn Lys Asp Leu Pro Ser Pro Ile Glu Arg Thr Ile 210 215 220 Ser Lys
Ile Lys Gly Leu Val Arg Ala Gln Val Tyr Ile Leu Pro Pro 225 230 235
240 Pro Ala Glu Gln Leu Ser Arg Lys Asp Val Ser Leu Thr Cys Leu Val
245 250 255 Val Gly Phe Asn Pro Gly Asp Ile Ser Val Glu Trp Thr Ser
Asn Gly 260 265 270 His Thr Glu Glu Asn Tyr Lys Asp Thr Ala Pro Val
Leu Asp Ser Asp 275 280 285 Gly Ser Tyr Phe Ile Tyr Ser Lys Leu Asn
Met Lys Thr Ser Lys Trp 290 295 300 Glu Lys Thr Asp Ser Phe Ser Cys
Asn Val Arg His Glu Gly Leu Lys 305 310 315 320 Asn Tyr Tyr Leu Lys
Lys Thr Ile Ser Arg Ser Pro Gly Lys 325 330 25214PRTArtificial
SequenceDescription of Artificial Sequence Synthetic protein
sequence 25Asp Ile Val Leu Thr Gln Ser Pro Ala Thr Leu Ser Val Thr
Pro Gly 1 5 10 15 Asp Ser Val Ser Leu Ser Cys Arg Ala Ser Gln Gly
Leu Thr Asn Asp 20 25 30 Leu His Trp Tyr Gln Gln Lys Pro His Glu
Ser Pro Arg Leu Leu Ile 35 40 45 Lys Tyr Ala Ser Gln Ser Ile Ser
Gly Ile Pro Ser Arg Phe Ser Gly 50 55 60 Ser Gly Ser Gly Thr Asp
Phe Thr Leu Thr Ile Asn Ser Val Glu Thr 65 70 75 80 Glu Asp Phe Gly
Val Phe Phe Cys Gln Gln Ser Asn Ser Trp Pro Phe 85 90 95 Thr Phe
Gly Ala Gly Thr Lys Leu Glu Ile Lys Arg Thr Val Ala Ala 100 105 110
Pro Ser Val Phe Ile Phe Pro Pro Ser Asp Glu Gln Leu Lys Ser Gly 115
120 125 Thr Ala Ser Val Val Cys Leu Leu Asn Asn Phe Tyr Pro Arg Glu
Ala 130 135 140 Lys Val Gln Trp Lys Val Asp Asn Ala Leu Gln Ser Gly
Asn Ser Gln 145 150 155 160 Glu Ser Val Thr Glu Gln Asp Ser Lys Asp
Ser Thr Tyr Ser Leu Ser 165 170 175 Ser Thr Leu Thr Leu Ser Lys Ala
Asp Tyr Glu Lys His Lys Val Tyr 180 185 190 Ala Cys Glu Val Thr His
Gln Gly Leu Ser Ser Pro Val Thr Lys Ser 195 200 205 Phe Asn Arg Gly
Glu Cys 210 26446PRTArtificial SequenceDescription of Artificial
Sequence Synthetic protein sequence 26Glu Val Lys Leu Val Glu Ser
Gly Gly Asp Leu Val Lys Pro Gly Gly 1 5 10 15 Ser Leu Lys Leu Ser
Cys Ala Ala Ser Gly Phe Ala Phe Ser Ser Tyr 20 25 30 Asp Met Ser
Trp Val Arg Gln Thr Pro Glu Lys Arg Leu Glu Trp Val 35 40 45 Ala
Thr Ile Ser Ser Ser Gly Ser Tyr Thr Tyr Tyr Pro Asp Ser Val 50 55
60 Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Arg Asn Thr Leu Tyr
65 70 75 80 Leu Gln Met Ser Ser Leu Arg Ser Glu Asp Thr Ala Leu Tyr
Tyr Cys 85 90 95 Glu Arg Leu Trp Gly Ala Met Asp Tyr Trp Gly Gln
Gly Thr Leu Val 100 105 110 Thr Val Ser Ser Ala Ser Thr Lys Gly Pro
Ser Val Phe Pro Leu Ala 115 120 125 Pro Ser Ser Lys Ser Thr Ser Gly
Gly Thr Ala Ala Leu Gly Cys Leu 130 135 140 Val Lys Asp Tyr Phe Pro
Glu Pro Val Thr Val Ser Trp Asn Ser Gly 145 150 155 160 Ala Leu Thr
Ser Gly Val His Thr Phe Pro Ala Val Leu Gln Ser Ser 165 170 175 Gly
Leu Tyr Ser Leu Ser Ser Val Val Thr Val Pro Ser Ser Ser Leu 180 185
190 Gly Thr Gln Thr Tyr Ile Cys Asn Val Asn His Lys Pro Ser Asn Thr
195 200 205 Lys Val Asp Lys Lys Val Glu Pro Lys Ser Cys Asp Lys Thr
His Thr 210 215 220 Cys Pro Pro Cys Pro Ala Pro Glu Leu Leu Gly Gly
Pro Ser Val Phe 225 230 235 240 Leu Phe Pro Pro Lys Pro Lys Asp Thr
Leu Met Ile Ser Arg Thr Pro 245 250 255 Glu Val Thr Cys Val Val Val
Asp Val Ser His Glu Asp Pro Glu Val 260 265 270 Lys Phe Asn Trp Tyr
Val Asp Gly Val Glu Val His Asn Ala Lys Thr 275 280 285 Lys Pro Arg
Glu Glu Gln Tyr Asn Ser Thr Tyr Arg Val Val Ser Val 290 295 300 Leu
Thr Val Leu His Gln Asp Trp Leu Asn Gly Lys Glu Tyr Lys Cys 305 310
315 320 Lys Val Ser Asn Lys Ala Leu Pro Ala Pro Ile Glu Lys Thr Ile
Ser 325 330 335 Lys Ala Lys Gly Gln Pro Arg Glu Pro Gln Val Tyr Thr
Leu Pro Pro 340 345 350 Ser Arg Asp Glu Leu Thr Lys Asn Gln Val Ser
Leu Thr Cys Leu Val 355 360 365 Lys Gly Phe Tyr Pro Ser Asp Ile Ala
Val Glu Trp Glu Ser Asn Gly 370 375 380 Gln Pro Glu Asn Asn Tyr Lys
Thr Thr Pro Pro Val Leu Asp Ser Asp 385 390 395 400 Gly Ser Phe Phe
Leu Tyr Ser Lys Leu Thr Val Asp Lys Ser Arg Trp 405 410 415 Gln Gln
Gly Asn Val Phe Ser Cys Ser Val Met His Glu Ala Leu His 420 425 430
Asn His Tyr Thr Gln Lys Ser Leu Ser Leu Ser Pro Gly Lys 435 440 445
27446PRTArtificial SequenceDescription of Artificial Sequence
Synthetic protein sequence 27Glu Val Lys Leu Val Glu Ser Gly Gly
Asp Leu Val Lys Pro Gly Gly 1 5 10 15 Ser Leu Lys Leu Ser Cys Ala
Ala Ser Gly Phe Ala Phe Ser Ser Tyr 20 25 30 Asp Met Ser Trp Val
Arg Gln Thr Pro Glu Lys Arg Leu Glu Trp Val 35 40 45 Ala Thr Ile
Ser Ser Ser Gly Ser Tyr Thr Tyr Tyr Pro Asp Ser Val 50 55 60 Lys
Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Arg Asn Thr Leu Tyr 65 70
75 80 Leu Gln Met Ser Ser Leu Arg Ser Glu Asp Thr Ala Leu Tyr Tyr
Cys 85 90 95 Glu Arg Leu Trp Gly Ala Met Asp Tyr Trp Gly Gln Gly
Thr Leu Val 100 105 110 Thr Val Ser Ser Ala Ser Thr Lys Gly Pro Ser
Val Phe Pro Leu Ala 115 120 125 Pro Ser Ser Lys Ser Thr Ser Gly Gly
Thr Ala Ala Leu Gly Cys Leu 130 135 140 Val Lys Asp Tyr Phe Pro Glu
Pro Val Thr Val Ser Trp Asn Ser Gly 145 150 155 160 Ala Leu Thr Ser
Gly Val His Thr Phe Pro Ala Val Leu Gln Ser Ser 165 170 175 Gly Leu
Tyr Ser Leu Ser Ser Val Val Thr Val Pro Ser Ser Ser Leu 180 185 190
Gly Thr Gln Thr Tyr Ile Cys Asn Val Asn His Lys Pro Ser Asn Thr 195
200 205 Lys Val Asp Lys Lys Val Glu Pro Lys Ser Cys Asp Lys Thr His
Thr 210 215 220 Cys Pro Pro Cys Pro Ala Pro Glu Leu Leu Gly Gly Pro
Ser Val Phe 225 230 235 240 Leu Phe Pro Pro Lys Pro Lys Asp Thr Leu
Met Ile Ser Arg Thr Pro 245 250 255 Glu Val Thr Cys Val Val Val Asp
Val Ser His Glu Asp Pro Glu Val 260 265 270 Lys Phe Asn Trp Tyr Val
Asp Gly Val Glu Val His Asn Ala Lys Thr 275 280 285 Lys Pro Arg Glu
Glu Gln Tyr Ala Ser Thr Tyr Arg Val Val Ser Val 290 295 300 Leu Thr
Val Leu His Gln Asp Trp Leu Asn Gly Lys Glu Tyr Lys Cys 305 310 315
320 Lys Val Ser Asn Lys Ala Leu Pro Ala Pro Ile Glu Lys Thr Ile Ser
325 330 335 Lys Ala Lys Gly Gln Pro Arg Glu Pro Gln Val Tyr Thr Leu
Pro Pro 340 345 350 Ser Arg Asp Glu Leu Thr Lys Asn Gln Val Ser Leu
Thr Cys Leu Val 355 360 365 Lys Gly Phe Tyr Pro Ser Asp Ile Ala Val
Glu Trp Glu Ser Asn Gly 370 375 380 Gln Pro Glu Asn Asn Tyr Lys Thr
Thr Pro Pro Val Leu Asp Ser Asp 385 390 395 400 Gly Ser Phe Phe Leu
Tyr Ser Lys Leu Thr Val Asp Lys Ser Arg Trp 405 410 415 Gln Gln Gly
Asn Val Phe Ser Cys Ser Val Met His Glu Ala Leu His 420 425 430 Asn
His Tyr Thr Gln Lys Ser Leu Ser Leu Ser Pro Gly Lys 435 440 445
28330PRTHomo sapiens 28Ala Ser Thr Lys Gly Pro Ser Val Phe Pro Leu
Ala Pro Ser Ser Lys 1 5 10 15 Ser Thr Ser Gly Gly Thr Ala Ala Leu
Gly Cys Leu Val Lys Asp Tyr 20 25 30 Phe Pro Glu Pro Val Thr Val
Ser Trp Asn Ser Gly Ala Leu Thr Ser 35 40 45 Gly Val His Thr Phe
Pro Ala Val Leu Gln Ser Ser Gly Leu Tyr Ser 50 55 60 Leu Ser Ser
Val Val Thr Val Pro Ser Ser Ser Leu Gly Thr Gln Thr 65 70 75 80 Tyr
Ile Cys Asn Val Asn His Lys Pro Ser Asn Thr Lys Val Asp Lys 85 90
95 Lys Val Glu Pro Lys Ser Cys Asp Lys Thr His Thr Cys Pro Pro Cys
100 105 110 Pro Ala Pro Glu Leu Leu Gly Gly Pro Ser Val Phe Leu Phe
Pro Pro 115 120 125 Lys Pro Lys Asp Thr Leu Met Ile Ser Arg Thr Pro
Glu Val Thr Cys 130 135 140 Val Val Val Asp Val Ser His Glu Asp Pro
Glu Val Lys Phe Asn Trp 145 150 155 160 Tyr Val Asp Gly Val Glu Val
His Asn Ala Lys Thr Lys Pro Arg Glu 165 170 175 Glu Gln Tyr Asn Ser
Thr Tyr Arg Val Val Ser Val Leu Thr Val Leu 180 185 190 His Gln Asp
Trp Leu Asn Gly Lys Glu Tyr Lys Cys Lys Val Ser Asn 195 200 205 Lys
Ala Leu Pro Ala Pro Ile Glu Lys Thr Ile Ser Lys Ala Lys Gly 210 215
220 Gln Pro Arg Glu Pro Gln Val Tyr Thr Leu Pro Pro Ser Arg Asp Glu
225 230 235 240 Leu Thr Lys Asn Gln Val Ser Leu Thr Cys Leu Val Lys
Gly Phe Tyr 245 250 255 Pro Ser Asp Ile Ala Val Glu Trp Glu Ser Asn
Gly Gln Pro Glu Asn 260 265 270 Asn Tyr Lys Thr Thr Pro Pro Val Leu
Asp Ser Asp Gly Ser Phe Phe 275 280 285 Leu Tyr Ser Lys Leu Thr Val
Asp Lys Ser Arg Trp Gln Gln Gly Asn 290 295 300 Val Phe Ser Cys Ser
Val Met His Glu Ala Leu His Asn His Tyr Thr 305 310 315 320 Gln Lys
Ser Leu Ser Leu Ser Pro Gly Lys 325 330 29330PRTHomo sapiens 29Ala
Ser Thr Lys Gly Pro Ser Val Phe Pro Leu Ala Pro Ser Ser Lys 1 5 10
15 Ser Thr Ser Gly Gly Thr Ala Ala Leu Gly Cys Leu Val Lys Asp Tyr
20 25 30 Phe Pro Glu Pro Val Thr Val Ser Trp Asn Ser Gly Ala Leu
Thr Ser 35 40 45 Gly Val His Thr Phe Pro Ala Val Leu Gln Ser Ser
Gly Leu Tyr Ser 50 55 60 Leu Ser Ser Val Val Thr Val Pro Ser Ser
Ser Leu Gly Thr Gln Thr 65 70 75 80 Tyr Ile Cys Asn Val Asn His Lys
Pro Ser Asn Thr Lys Val Asp Lys 85 90 95 Lys Val Glu Pro Lys Ser
Cys Asp Lys Thr His Thr Cys Pro Pro Cys 100 105 110 Pro Ala Pro Glu
Leu Leu Gly Gly Pro Ser Val Phe Leu Phe Pro Pro 115 120 125 Lys Pro
Lys Asp Thr Leu Met Ile Ser Arg Thr Pro Glu Val Thr Cys 130 135 140
Val Val Val Asp Val Ser His Glu Asp Pro Glu Val Lys Phe Asn Trp 145
150 155 160 Tyr Val Asp Gly Val Glu Val His Asn Ala Lys Thr Lys Pro
Arg Glu 165 170 175 Glu Gln Tyr Ala Ser Thr Tyr Arg Val Val Ser Val
Leu Thr Val Leu 180 185 190 His Gln Asp Trp Leu Asn Gly Lys Glu Tyr
Lys Cys Lys Val Ser Asn 195 200 205 Lys Ala Leu Pro Ala Pro Ile Glu
Lys Thr Ile Ser Lys Ala Lys Gly 210 215 220 Gln Pro Arg Glu Pro Gln
Val Tyr Thr Leu Pro Pro Ser Arg Asp Glu 225 230 235 240 Leu Thr Lys
Asn Gln Val Ser Leu Thr Cys Leu Val Lys Gly Phe Tyr 245 250 255 Pro
Ser Asp Ile Ala Val Glu Trp Glu Ser Asn Gly Gln Pro Glu Asn 260 265
270 Asn Tyr Lys Thr Thr Pro Pro Val Leu Asp Ser Asp Gly Ser Phe Phe
275 280 285 Leu Tyr Ser Lys Leu Thr Val Asp Lys Ser Arg Trp Gln Gln
Gly Asn 290 295 300 Val Phe Ser Cys Ser Val Met His Glu Ala Leu His
Asn His Tyr Thr 305 310 315 320 Gln Lys Ser Leu Ser Leu Ser Pro Gly
Lys 325 330 30107PRTHomo sapiens 30Arg Thr Val Ala Ala Pro Ser Val
Phe Ile Phe Pro Pro Ser Asp Glu 1 5 10 15 Gln Leu Lys Ser Gly Thr
Ala Ser Val Val Cys Leu Leu Asn Asn Phe 20 25 30 Tyr Pro Arg Glu
Ala Lys Val Gln Trp Lys Val Asp Asn Ala Leu Gln 35 40 45 Ser Gly
Asn Ser Gln Glu Ser Val Thr Glu Gln Asp Ser Lys Asp Ser 50 55 60
Thr Tyr Ser Leu Ser Ser Thr Leu Thr Leu Ser Lys Ala Asp Tyr Glu 65
70 75 80 Lys His Lys Val Tyr Ala Cys Glu Val Thr His Gln Gly Leu
Ser Ser 85 90 95 Pro Val Thr Lys Ser Phe Asn Arg Gly Glu Cys 100
105
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