U.S. patent application number 13/820278 was filed with the patent office on 2015-02-19 for anti-cxcl13 antibodies and methods of using the same.
This patent application is currently assigned to VACCINEX, INC.. The applicant listed for this patent is Ekaterina Klimatcheva, Mark Paris, Ernest S. Smith. Invention is credited to Ekaterina Klimatcheva, Mark Paris, Ernest S. Smith.
Application Number | 20150050287 13/820278 |
Document ID | / |
Family ID | 45773520 |
Filed Date | 2015-02-19 |
United States Patent
Application |
20150050287 |
Kind Code |
A9 |
Klimatcheva; Ekaterina ; et
al. |
February 19, 2015 |
ANTI-CXCL13 ANTIBODIES AND METHODS OF USING THE SAME
Abstract
Compositions and methods are provided for treating diseases
associated with CXCL13 expression, including certain autoimmune
diseases, inflammatory diseases, and cancers. In particular,
anti-CXCL13 monoclonal antibodies have been developed to neutralize
CXCL13.
Inventors: |
Klimatcheva; Ekaterina;
(Webster, NY) ; Paris; Mark; (Mendon, NY) ;
Smith; Ernest S.; (Ontario, NY) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Klimatcheva; Ekaterina
Paris; Mark
Smith; Ernest S. |
Webster
Mendon
Ontario |
NY
NY
NY |
US
US
US |
|
|
Assignee: |
VACCINEX, INC.
Rochester
NY
|
Prior
Publication: |
|
Document Identifier |
Publication Date |
|
US 20140147447 A1 |
May 29, 2014 |
|
|
Family ID: |
45773520 |
Appl. No.: |
13/820278 |
Filed: |
September 1, 2011 |
PCT Filed: |
September 1, 2011 |
PCT NO: |
PCT/US2011/050177 PCKC 00 |
371 Date: |
April 19, 2013 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
|
|
61379672 |
Sep 2, 2010 |
|
|
|
61481645 |
May 2, 2011 |
|
|
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Current U.S.
Class: |
424/158.1 ;
530/387.3; 530/389.2; 536/23.53 |
Current CPC
Class: |
A61P 19/02 20180101;
C07K 16/24 20130101; A61P 37/00 20180101; C07K 2317/73 20130101;
A61P 1/04 20180101; A61P 37/02 20180101; C07K 2317/92 20130101;
A61P 17/00 20180101; A61P 35/02 20180101; A61P 13/08 20180101; A61P
31/04 20180101; C07K 2317/24 20130101; A61P 35/00 20180101; A61K
2039/505 20130101; A61P 43/00 20180101; A61P 29/00 20180101; C07K
2317/34 20130101; C07K 2317/33 20130101 |
Class at
Publication: |
424/158.1 ;
530/389.2; 530/387.3; 536/23.53 |
International
Class: |
C07K 16/24 20060101
C07K016/24 |
Claims
1. An isolated antibody or antigen-binding fragment thereof which
specifically binds to CXCL13, wherein said antibody or
antigen-binding fragment is selected from the group consisting of:
a) an antibody or antigen-binding fragment thereof which
specifically binds to the same CXCL13 epitope as a reference
monoclonal antibody selected from the group consisting of MAb 5261,
MAb 5378, MAb 5080, MAb 1476, 3D2, and 3C9; b) an antibody or
antigen-binding fragment thereof that competitively inhibits a
reference monoclonal antibody selected from the group consisting of
MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2, and 3C9 from
specifically binding to CXCL13; c) an antibody or antigen-binding
fragment thereof selected from the group consisting of MAb 5261,
MAb 5378, MAb 5080, MAb 1476, 3D2, and 3C9; d) an antibody or
antigen-binding fragment thereof, wherein the heavy chain variable
region (VH) of said antibody or fragment thereof comprises an amino
acid sequence at least 90% identical to a sequence selected from
the group consisting of SEQ ID NO: 13 and SEQ ID NO: 3; e) an
antibody or antigen-binding fragment thereof, wherein the light
chain variable region (VL) of said antibody or fragment thereof
comprises an amino acid sequence at least 90% identical to a
sequence selected from the group consisting of SEQ ID NO: 15, SEQ
ID NO: 17, and SEQ ID NO: 8; f) an antibody or antigen-binding
fragment thereof, wherein the VH of said antibody or fragment
thereof comprises an amino acid sequence identical, except for 20
or fewer conservative amino acid substitutions, to a sequence
selected from the group consisting of SEQ ID NO: 13 and SEQ ID NO:
3; g) an antibody or antigen-binding fragment thereof which
specifically binds to CXCL13, wherein the VL of said antibody or
fragment thereof comprises an amino acid sequence identical, except
for 20 or fewer conservative amino acid substitutions, to a
sequence selected from the group consisting of SEQ ID NO: 15, SEQ
ID NO: 17, and SEQ ID NO: 8; h) an antibody or antigen-binding
fragment thereof, wherein the VH of said antibody or fragment
thereof comprises the amino acid sequence selected from the group
consisting of SEQ ID NO: 13 and SEQ ID NO: 3; i) an antibody or
antigen-binding fragment thereof, wherein the VL of said antibody
or fragment thereof comprises the amino acid sequence selected from
the group consisting of SEQ ID NO: 15, SEQ ID NO: 17, and SEQ ID
NO: 8; j) an antibody or antigen-binding fragment thereof, wherein
the VH and VL of said antibody or fragment thereof comprise amino
acid sequences at least 90% identical to VH and VL sequences
selected from the group consisting of: (i) SEQ ID NO: 13 and SEQ ID
NO: 15, respectively; (ii) SEQ ID NO: 13 and SEQ ID NO: 17,
respectively; and (iii) SEQ ID NO: 3 and SEQ ID NO: 8,
respectively; k) an antibody or antigen-binding fragment thereof,
wherein the VH and VL of said antibody or fragment thereof comprise
amino acid sequences identical, except for 20 or fewer conservative
amino acid substitutions each, to VH and VL sequences selected from
the group consisting of: (i) SEQ ID NO: 13 and SEQ ID NO: 15,
respectively; (ii) SEQ ID NO: 13 and SEQ ID NO: 17, respectively;
and (iii) SEQ ID NO: 3 and SEQ ID NO: 8, respectively; l) an
antibody or antigen-binding fragment thereof, wherein the VH and VL
of said antibody or fragment thereof comprise amino acid sequences
identical to VH and VL sequences selected from the group consisting
of: (i) SEQ ID NO: 13 and SEQ ID NO: 15, respectively; (ii) SEQ ID
NO: 13 and SEQ ID NO: 17, respectively; and (iii) SEQ ID NO: 3 and
SEQ ID NO: 8, respectively; m) an antibody or antigen-binding
fragment thereof, wherein the VH of said antibody or fragment
thereof comprises a Chothia-Kabat heavy chain complementarity
determining region-1 (VH-CDR1) amino acid sequence identical,
except for two or fewer amino acid substitutions, to SEQ ID NO: 4;
n) an antibody or antigen-binding fragment thereof, wherein the VH
of said antibody or fragment thereof comprises a Chothia-Kabat
heavy chain complementarity determining region-1 (VH-CDR1) amino
acid sequence set forth in SEQ ID NO: 4; o) an antibody or
antigen-binding fragment thereof, wherein the VH of said antibody
or fragment thereof comprises a Kabat heavy chain complementarity
determining region-2 (VH-CDR2) amino acid sequence identical,
except for four or fewer amino acid substitutions, to SEQ ID NO: 5;
p) an antibody or fragment thereof, wherein the VH of said antibody
or fragment thereof comprises a Kabat heavy chain complementarity
determining region-2 (VH-CDR2) amino acid sequence set forth in SEQ
ID NO: 5; q) an antibody or antigen-binding fragment thereof,
wherein the VH of said antibody or fragment thereof comprises a
Kabat heavy chain complementarity determining region-3 (VH-CDR3)
amino acid sequence identical, except for two or fewer amino acid
substitutions, to SEQ ID NO: 6; r) an antibody or antigen-binding
fragment thereof, wherein the VH of said antibody or fragment
thereof comprises a Kabat heavy chain complementarity determining
region-3 (VH-CDR3) amino acid sequence set forth in SEQ ID NO: 6;
s) an antibody or antigen-binding fragment thereof, wherein the VL
of said antibody or fragment thereof comprises a Kabat light chain
complementarity determining region-1 (VL-CDR1) amino acid sequence
identical, except for four or fewer amino acid substitutions, to
SEQ ID NO: 16 or SEQ ID NO: 9; t) an antibody or antigen-binding
fragment thereof, wherein the VL of said antibody or fragment
thereof comprises a Kabat light chain complementarity determining
region-1 (VL-CDR1) amino acid sequence set forth in SEQ ID NO: 16;
u) an antibody or antigen-binding fragment thereof, wherein the VL
of said antibody or fragment thereof comprises a Kabat light chain
complementarity determining region-1 (VL-CDR1) amino acid sequence
set forth in SEQ ID NO: 9; v) an antibody or antigen-binding
fragment thereof, wherein the VL of said antibody or fragment
thereof comprises a Kabat light chain complementarity determining
region-2 (VL-CDR2) amino acid sequence identical, except for two or
fewer amino acid substitutions, to SEQ ID NO: 10. w) an antibody or
antigen-binding fragment thereof, wherein the VL of said antibody
or fragment thereof comprises a Kabat light chain complementarity
determining region-2 (VL-CDR2) amino acid sequence set forth in SEQ
ID NO: 10; x) an antibody or antigen-binding fragment thereof,
wherein the VL of said antibody or fragment thereof comprises a
Kabat light chain complementarity determining region-3 (VL-CDR3)
amino acid sequence identical, except for two or fewer amino acid
substitutions, to SEQ ID NO: 11. y) an antibody or antigen-binding
fragment thereof, wherein the VL of said antibody or fragment
thereof comprises a Kabat light chain complementarity determining
region-3 (VL-CDR3) amino acid sequence set forth in SEQ ID NO: 11;
z) an antibody or antigen-binding fragment thereof, wherein the VH
of said antibody or fragment thereof comprises VH-CDR1, VH-CDR2,
and VH-CDR3 amino acid sequences comprising SEQ ID NOs: 4, 5, and
6, respectively, except for four or fewer amino acid substitutions
in one or more of said VH-CDRs; aa) an antibody or antigen-binding
fragment thereof, wherein the VH of said antibody or fragment
thereof comprises VH-CDR1, VH-CDR2, and VH-CDR3 amino acid
sequences comprising SEQ ID NOs: 4, 5, and 6, respectively; bb) an
antibody or antigen-binding fragment thereof, wherein the VL of
said antibody or fragment thereof comprises VL-CDR1, VL-CDR2, and
VL-CDR3 amino acid sequences comprising SEQ ID NOs: 16 or 9, 10,
and 11, respectively, except for four or fewer amino acid
substitutions in one or more of said VL-CDRs; cc) an antibody or
antigen-binding fragment thereof, wherein the VL of said antibody
or fragment thereof comprises VL-CDR1, VL-CDR2, and VL-CDR3 amino
acid sequences comprising SEQ ID NOs: 16, 10, and 11, respectively;
dd) an antibody or antigen-binding fragment thereof, wherein the VL
of said antibody or fragment thereof comprises VL-CDR1, VL-CDR2,
and VL-CDR3 amino acid sequences comprising SEQ ID NOs: 9, 10, and
11, respectively; and ee) an antibody or antigen-binding fragment
thereof, wherein the VH of said antibody or fragment thereof
comprises VH-CDR1, VH-CDR2, and VH-CDR3 amino acid sequences
comprising SEQ ID NOs: 4, 5, and 6, respectively; and wherein the
VL of said antibody or fragment thereof comprises VL-CDR1, VL-CDR2,
and VL-CDR3 amino acid sequences comprising SEQ ID NOs: 9, 10, and
11, respectively.
2-37. (canceled)
38. The antibody or antigen-binding fragment thereof according to
claim 1, which is multispecific.
39. The antibody or antigen-binding fragment thereof according to
claim 38, which is bispecific.
40. The antibody or antigen-binding fragment thereof according to
claim 1, wherein said antigen-binding fragment is selected from the
group consisting of an Fab fragment, an F(ab').sub.2 fragment, an
Fv fragment, and a scFv.
41-47. (canceled)
48. The antibody or antigen-binding fragment thereof according to
claim 1, which specifically binds to a CXCL13 polypeptide or
fragment thereof, or a CXCL13 variant polypeptide with an affinity
characterized by a dissociation constant (K.sub.D) no greater than
5.times.10.sup.-2 M, 10.sup.-2 M, 5.times.10.sup.-3 M, 10.sup.-3 M,
5.times.10.sup.-4 M, 10.sup.-4 M, 5.times.10.sup.-5 M, 10.sup.-5 M,
5.times.10.sup.-6 M, 10.sup.-6 M, 5.times.10.sup.-7 M, 10.sup.-7 M,
5.times.10.sup.-8 M, 10.sup.-8 M, 5.times.10.sup.-9 M, 10.sup.-9 M,
5.times.10.sup.-10 M, 10.sup.-10 M, 5.times.10.sup.-11 M,
10.sup.-11 M, 5.times.10.sup.-12 M, 5.7.times.10.sup.-12 M,
8.4.times.10.sup.-12 M, 10.sup.-12 M, 5.times.10.sup.-13 M,
10.sup.-13 M, 5.times.10.sup.-14 M, 10.sup.-14 M,
5.times.10.sup.-15 M, or 10.sup.-15 M.
49. The antibody or antigen-binding fragment thereof according to
claim 48, wherein said CXCL13 polypeptide or fragment thereof, or a
CXCL13 variant polypeptide is human or murine.
50-51. (canceled)
52. The antibody or antigen-binding fragment thereof according to
claim 1, which inhibits CXCL13 from binding to a CXCL13
receptor.
53. The antibody or antigen-binding fragment thereof according to
claim 52, wherein said CXCL13 receptor is CXCR5.
54. The antibody or antigen-binding fragment thereof according to
claim 1, wherein said antibody or fragment thereof is humanized,
primatized or chimeric.
55. (canceled)
56. The antibody or antigen-binding fragment thereof according to
claim 1, further comprising a heterologous polypeptide fused
thereto.
57-59. (canceled)
60. A composition comprising the antibody or antigen-binding
fragment thereof according to claim 1, and a carrier.
61. The composition of claim 60, wherein said carrier is selected
from the group consisting of saline, buffered saline, dextrose,
water, glycerol, and combinations thereof.
62. An isolated polynucleotide comprising a nucleic acid which
encodes an antibody VH polypeptide, wherein an antibody or antigen
binding fragment thereof comprising said VH polypeptide
specifically binds to CXCL13, and wherein said nucleic acid is
selected from the group consisting of: a) a nucleic acid which
encodes an antibody VH polypeptide, wherein the amino acid sequence
of said VH polypeptide is at least 90% identical to a sequence
selected from the group consisting of SEQ ID NO: 12 and SEQ ID NO:
2; b) a nucleic acid comprising a nucleotide sequence comprising a
sequence selected from the group consisting of SEQ ID NO: 12 and
SEQ ID NO: 2; c) a nucleic acid which encodes an antibody VH
polypeptide, wherein the amino acid sequence of said VH polypeptide
is identical, except for 20 or fewer conservative amino acid
substitutions, to a sequence selected from the group consisting of
SEQ ID NO: 2 and SEQ ID NO: 12; d) a nucleic acid which encodes a
VH-CDR1 amino acid sequence identical, except for two or fewer
amino acid substitutions, to a sequence consisting of SEQ ID NO: 4;
e) a nucleic acid which encodes a VH-CDR1 amino acid sequence
identical to SEQ ID NO: 4; f) a nucleic acid which encodes a
VH-CDR2 amino acid sequence identical, except for four or fewer
amino acid substitutions, to a sequence consisting of SEQ ID NO: 5;
g) a nucleic acid which encodes a VH-CDR2 amino acid sequence
identical to SEQ ID NO: 5; h) a nucleic acid which encodes a
VH-CDR3 amino acid sequence identical, except for two or fewer
amino acid substitutions, to a sequence consisting of SEQ ID NO: 6;
i) a nucleic acid which encodes a VH-CDR3 amino acid sequence
identical to SEQ ID NO: 6; and j) a nucleic acid which encodes an
antibody VH polypeptide, wherein said VH polypeptide comprises
VH-CDR1, VH-CDR2, and VH-CDR3 amino acid sequences comprising SEQ
ID NOs: 4, 5, and 6, respectively.
63. The polynucleotide of claim 62, wherein the nucleotide sequence
encoding said VH polypeptide is optimized for increased expression
without changing the amino acid sequence of said VH
polypeptide.
64. The polynucleotide of claim 63, wherein said optimization
comprises identification and removal of splice donor and splice
acceptor sites.
65. The polynucleotide of claim 63, wherein said optimization
comprises optimization of codon usage for the cells expressing said
polynucleotide.
66-67. (canceled)
68. An isolated polynucleotide comprising a nucleic acid which
encodes an antibody VL polypeptide, wherein an antibody or antigen
binding fragment thereof comprising said VL polypeptide
specifically binds to CXCL13, and wherein said nucleic acid is
selected from the group consisting of: a) a nucleic acid which
encodes an antibody VL polypeptide, wherein the amino acid sequence
of said VL polypeptide is at least 90% identical to a sequence
selected from the group consisting of SEQ ID NO: 7 and SEQ ID NO:
14; b) a nucleic acid comprising a nucleotide sequence comprising a
sequence selected from the group consisting of SEQ ID NO: 7, SEQ ID
NO: 14, and SEQ ID NO: 18; c) a nucleic acid which encodes an
antibody VL polypeptide, wherein the amino acid sequence of said VL
polypeptide is identical, except for 20 or fewer conservative amino
acid substitutions, to a sequence selected from the group
consisting of SEQ ID NO: 7, SEQ ID NO: 14, and SEQ ID NO: 18; d) a
nucleic acid which encodes a VL-CDR1 amino acid sequence identical,
except for four or fewer amino acid substitutions, to a sequence
selected from the group consisting of SEQ ID NO: 9 and SEQ ID NO:
16; e) a nucleic acid which encodes a VL-CDR1, wherein said VL-CDR1
amino acid sequence is a sequence selected from the group
consisting of SEQ ID NO: 9 and SEQ ID NO: 16; f) a nucleic acid
which encodes a VL-CDR2 amino acid sequence identical, except for
two or fewer amino acid substitutions, to a sequence consisting of
SEQ ID NO: 10; g) a nucleic acid which encodes a VL-CDR2, wherein
said VL-CDR2 amino acid sequence is SEQ ID NO: 10; h) a nucleic
acid which encodes a VL-CDR3 amino acid sequence identical, except
for two or fewer amino acid substitutions, to a sequence consisting
of SEQ ID NO: 11; i) a nucleic acid which endocdes a VL-CDR3,
wherein said VL-CDR3 amino acid sequence is SEQ ID NO: 11; and j) a
nucleic acid which encodes an antibody VL polypeptide, wherein said
VL polypeptide comprises VL-CDR1, VL-CDR2, and VL-CDR3 amino acid
sequences comprising SEQ ID NOs: 9 or 16, 10, and 11,
respectively.
69. The polynucleotide of claim 68, wherein the nucleotide sequence
encoding said VL polypeptide is optimized for increased expression
without changing the amino acid sequence of said VL
polypeptide.
70. The polynucleotide of claim 69, wherein said optimization
comprises identification and removal of splice donor and splice
acceptor sites.
71. The polynucleotide of claim 69, wherein said optimization
comprises optimization of codon usage for the cells expressing said
polynucleotide.
72-89. (canceled)
90. The polynucleotide of claim 62, further comprising a nucleic
acid encoding a signal peptide fused to the antibody VH
polypeptide.
91. The polynucleotide of claim 68, further comprising a nucleic
acid encoding a signal peptide fused to the antibody VL
polypeptide.
92. The polynucleotide of claim 62, further comprising at least one
of: a nucleic acid encoding a heavy chain constant region CH1
domain fused to the antibody VH polypeptide; a nucleic acid
encoding a heavy chain constant region CH2 domain fused to the
antibody VH polypeptide; a nucleic acid encoding a heavy chain
constant region CH3 domain fused to said VH polypeptide; and a
nucleic acid encoding a heavy chain hinge region fused to said VH
polypeptide.
93-98. (canceled)
99. The polynucleotide of claim 62, wherein said antibody or
antigen binding fragment thereof specifically binds to human and
murine CXCL13.
100-106. (canceled)
107. A composition comprising an isolated VH encoding
polynucleotide and an isolated VL encoding polynucleotide, wherein
said VH encoding polynucleotide and said VL encoding polynucleotide
are selected from the group consisting of: a) a VH encoding
polynucleotide and VL encoding polynucleotide comprising nucleic
acids encoding amino acid sequences at least 90% identical to VH
and VL sequences selected from the group consisting of: (i) SEQ ID
NO: 3 and SEQ ID NO: 8, respectively; (ii) SEQ ID NO: 13 and SEQ ID
NO: 15, respectively; and (iii) SEQ ID NO: 13 and SEQ ID NO: 17,
respectively; b) a VH encoding polynucleotide and a VL encoding
polynucleotide comprising nucleic acids encoding amino acid
sequences consisting of VH and VL sequences selected from the group
consisting of: (a) SEQ ID NO: 3 and SEQ ID NO: 8, respectively; (b)
SEQ ID NO: 13 and SEQ ID NO: 15, respectively; and (c) SEQ ID NO:
13 and SEQ ID NO: 17, respectively; c) a VH encoding polynucleotide
and a VL encoding polynucleotide comprising nucleic acids encoding
amino acid sequences identical, except for less than 20
conservative amino acid substitutions, to VH and VL sequences
selected from the group consisting of: (i) SEQ ID NO: 3 and SEQ ID
NO: 8, respectively; (ii) SEQ ID NO: 13 and SEQ ID NO: 15,
respectively; and (iii) SEQ ID NO: 13 and SEQ ID NO: 17,
respectively; d) a VH encoding polynucleotide and a VL encoding
polynucleotide comprising nucleic acids encoding amino acid
sequences selected from the group consisting of: (i) SEQ ID NO: 3
and SEQ ID NO: 8, respectively; (ii) SEQ ID NO: 13 and SEQ ID NO:
15, respectively; and (iii) SEQ ID NO: 13 and SEQ ID NO: 17,
respectively; and e) a VH encoding polynucleotide encoding a VH
polypeptide comprising VH-CDR1, VH-CDR2, and VH-CDR3 amino acid
sequences consisting of SEQ ID NOs: 4, 5, and 6, respectively; and
a VL encoding polynucleotide encoding a VL polypeptide comprising
VL-CDR1, VL-CDR2, and VL-CDR3 amino acid sequences consisting of
SEQ ID NOs: 9 or 16, 10, and 11, respectively; wherein an antibody
or antigen-binding fragment thereof encoded by said VH and VL
encoding polynucleotides specifically binds CXCL13.
108-111. (canceled)
112. The composition of claim 107, wherein said VH encoding
polynucleotide further comprises a nucleic acid encoding a signal
peptide fused to said antibody VH polypeptide.
113. The composition of claim 107, wherein said VL encoding
polynucleotide further comprises a nucleic acid encoding a signal
peptide fused to said antibody VL polypeptide.
114. The composition of claim 107, wherein said VH encoding
polynucleotide further comprises at least one of: a nucleic acid
encoding a heavy chain constant region CH1 domain fused to said VH
polypeptide; a nucleic acid encoding a heavy chain constant region
CH2 domain fused to said VH polypeptide; a nucleic acid encoding a
heavy chain constant region CH3 domain fused to said VH
polypeptide; and a nucleic acid encoding a heavy chain hinge region
fused to said VH polypeptide.
115-120. (canceled)
121. The composition of claim 107 wherein said VH encoding
polynucleotide and said VL encoding polynucleotide are contained on
a single vector.
122. The composition of claim 107, wherein said VH encoding
polynucleotide is contained on a first vector and said VL encoding
polynucleotide is contained on a second vector which is
non-identical to said first vector.
123. The composition of claim 121, wherein said VH encoding
polynucleotide is operably associated with a first promoter and
said VL encoding polynucleotide is operably associated with a
second promoter.
124-127. (canceled)
128. The composition of claim 107, wherein said antibody or antigen
binding fragment thereof specifically binds to human and murine
CXCL13.
129-141. (canceled)
142. A method for neutralizing CXCL13 in an animal, comprising
administering to said animal a composition comprising: (a) the
isolated antibody or antigen-binding fragment thereof of claim 1;
and (b) a pharmaceutically acceptable carrier.
143. A method for treating an autoimmune disease or an inflammatory
disease in an animal in need of treatment, comprising administering
to said animal a composition comprising: (a) the isolated antibody
or antigen-binding fragment thereof of claim 1; and (b) a
pharmaceutically acceptable carrier.
144. The method of claim 143, wherein said autoimmune disease or
said inflammatory disease is multiple sclerosis.
145. The method of claim 143, wherein said autoimmune disease or
said inflammatory disease is Systemic Lupus Erythematosis
(SLE).
146. The method of claim 143, wherein said autoimmune disease or
said inflammatory disease is arthritis.
147. The method of claim 146, wherein said arthritis is rheumatoid
arthritis.
148. A method for treating a cancer in an animal in need of
treatment, comprising administering to said animal a composition
comprising: (a) the isolated antibody or antigen-binding fragment
thereof of claim 1; and (b) a pharmaceutically acceptable
carrier.
149. The method of claim 148, wherein said cancer is prostate or
colon cancer.
150. A method for inhibiting gastric lymphoid follicles in an
animal, comprising administering to said animal a composition
comprising: (a) the isolated antibody or antigen-binding fragment
thereof of claim 1; and (b) a pharmaceutically acceptable
carrier.
151. A method for preventing or treating mucosa-associated lymphoid
tissue (MALT) lymphoma or a gastric or duodenal ulcer in an animal
in need of prevention or treatment, comprising administering to
said animal a composition comprising: (a) the isolated antibody or
antigen-binding fragment thereof of claim 1; and (b) a
pharmaceutically acceptable carrier.
152. (canceled)
153. The method of claim 150, wherein said animal has been infected
with a Heliobacter bacterium.
154. The method of claim 142, wherein said antibody or fragment
thereof inhibits CXCL13 binding to a CXCL13 receptor.
155. The method of claim 154, wherein said CXCL13 receptor is
CXCR5.
156. (canceled)
157. The method of claim 142, wherein said animal is a mammal.
158. The method of claim 157, wherein said mammal is a human.
159. The method of claim 151, wherein said animal has been infected
with a Heliobacter bacterium.
160. The polynucleotide of claim 68, wherein said antibody or
antigen-binding fragment thereof specifically binds to human and
murine CXCL13.
Description
[0001] The content of the electronically submitted sequence listing
in ASCII text file (Name: "sequencelisting_ascii.txt"; Size: 16,923
bytes; and Date of Creation: Apr. 28, 2011) filed with the
application is incorporated herein by reference in its
entirety.
BACKGROUND OF THE INVENTION
[0002] Homeostatic B Cell-Attracting chemokine 1 (BCA-1), otherwise
known as CXCL13 (or ANGIE, BLC, BLR1L, ANGIE2, or Scyb13), is
constitutively expressed in secondary lymphoid organs (e.g.,
spleen, lymph nodes, and Peyer's patches) by follicular dendritic
cells (FDCs) and macrophages. See Gunn et al., Nature 391:799-803
(1998) and Carlsen et al., Blood 104(10):3021-3027 (2004). CXCL13
primarily acts through G-protein-coupled CXCR5 receptor (Burkitt's
lymphoma receptor 1). CXCR5 is expressed, e.g., on mature B
lymphocytes, CD4+ follicular helper T cells (Thf cells), a minor
subset of CD8+ T cells, and activated tonsillar Treg cells. See
Legler et al., J. Exp. Med. 187:655-660 (1998); Forster et al.,
Blood 84:830-840 (1994); Fazilleau et al., Immunity 30:324-335
(2009); Ansel et al., J. Exp. Med. 190:1123-1134 (1999); Lim et
al., J. Clin. Invest. 114(11):1640-1649 (2004); and R. Forster,
Chapter in Academic Press Cytokine Reference, August 2000.
[0003] Generation of B-cells having the potential for autoantibody
(antibody against self-antigen) production is common under normal
physiological conditions. However, such natural autoantibodies are
low affinity IgM antibodies that exhibit wide-spectrum reactivity
and strong a preference for soluble self antigens over cell surface
antigens (see, e.g., Dichiero et al., J. Immunol. 134(2):765-771
(1985); Cote et al., Proc. Natl. Acad. Sci. 83:2959-2963 (1986)).
Autoreactive low-affininty B-cells undergo apoptosis and,
therefore, are unlikely to present a danger to a healthy
organism.
[0004] In the absence of infection and during a normal immune
response, CXCL 13 and its receptor CXCR5 are involved in the homing
of B-cells and follicular B-helper T cells into primary follicles
in lymph nodes and spleen; germinal center formation; and lymphoid
organogenesis. See, e.g., Forster et al., Cell 87:1037-1047
(1996).
[0005] CXCL13 and CXCR5-deficient mice demonstrated impaired
development of Peyer patches and lymph nodes due to the lack of
organized follicles. See Ansel et al., Nature 406:309-314 (2000).
Furthermore, immunization with T-cell-dependent antigen in the
context of the CXCL13 knockout phenotype led to the formation of
misplaced and abnormally small germinal centres in the lymph nodes
and spleens (Ansel et al.).
[0006] In a chronically-inflamed environment, ectopic germinal
centres form within affected (often non-lymphoid) tissues. CXCL13
over-expression in these germinal centres by follicular dendritic
cells (FDCs), accompanied by disregulation in interactions among
FDCs, B-cells and follicular Th cells, reduced elimination of
autoreactive B-cells and subsequent, antigen-driven, generation of
affinity-mature long-lived plasma cells and memory B-cells
producing high affinity IgG autoantibodies, which can result in the
development of autoimmune and inflammatory disorders. See, e.g.,
Vinuesa et al., Immunology 9:845-857 (2009). Furthermore,
over-expression of CXCR5 receptor in certain cancers has been
reported to promote CXCL13-dependent cell proliferation and
metastasis.
[0007] High-level expression of CXCL13 (BCA-1) and its receptor,
CXCR5, has been observed in H. pylori-induced gastric lymphoid
follicles and mucosa-associated lymphoid tissue (MALT) lymphomas.
See, e.g., Mazzucchelli et al., J Clin Invest 104:R49-R54 (1999).
Furthermore, CXCL13 (BCA-1) expression was found in all samples of
H. pylori-induced gastritis. Id. In the gastric mucosa of H.
heilmannii-infected wild-type mice, the mRNA expression level of
CXCL13, which is known to be involved in organogenesis of lymphatic
tissues (including MALT), was significantly higher than that of
uninfected mice. See Nobutani et al., FEMS Immunol Med Microbiol
60:156-164 (2010).
[0008] The need for therapies that target CXCL13-mediated signaling
pathways has become increasingly apparent in the recent years. The
mechanisms of action for such treatments would include, e.g.,
blockade of CXCL13 interaction with its receptor resulting in
interference with B cell and follicular B-helper T cell migration
into inflamed tissues and germinal center formation (e.g., in the
case of autoimmune disease) and inhibition of cancer cell
proliferation and ability to spread in oncological disorders.
FIELD OF THE INVENTION
[0009] The invention relates to CXCL13 neutralizing binding
molecules, e.g., antibodies and antigen binding fragments thereof,
e.g., humanized monoclonal antibodies, methods of using the binding
molecules, and methods for treatment of conditions and diseases
associated with CXCL13-expressing cells.
BRIEF SUMMARY OF THE INVENTION
[0010] One aspect the invention relates to an isolated antigen
binding molecule which specifically binds to the same CXCL13
epitope as a reference monoclonal antibody selected from the group
consisting of MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2, and 3C9.
In certain embodiments, the antigen binding molecule specifically
binds to the same CXCL13 epitope as MAb 5261 and MAb 5378.
[0011] In another aspect, the invention relates to an isolated
antigen binding molecule which specifically binds to CXCL13,
wherein said binding molecule competitively inhibits a reference
monoclonal antibody selected from the group consisting of MAb 5261,
MAb 5378, MAb 5080, MAb 1476, 3D2, and 3C9 from specifically
binding to CXCL13. In certain embodiments, the antigen binding
molecule competitively inhibits MAb 5261 and MAb 5378. In another
embodiment, the antibody or fragment thereof is selected from the
group consisting of MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2,
and 3C9.
[0012] In one embodiment of the invention, the isolated antibody or
antigen-binding fragment thereof specifically binds to CXCL13 and
the heavy chain variable region (VH) of said antibody or fragment
thereof comprises an amino acid sequence at least 90% identical to
a sequence selected from the group consisting of SEQ ID NO: 13 and
SEQ ID NO 3. In another embodiment, the light chain variable region
(VL) of the antibody or fragment thereof comprises an amino acid
sequence at least 90% identical to a sequence selected from the
group consisting of SEQ ID NO: 15, SEQ ID NO: 17, and SEQ ID NO:
8.
[0013] In another embodiment, the isolated antibody or
antigen-binding fragment thereof specifically binds to CXCL13 and
the VH of said antibody or fragment thereof comprises an amino acid
sequence identical, except for 20 or fewer conservative amino acid
substitutions, to a sequence selected from the group consisting of
SEQ ID NO: 13 and SEQ ID NO: 3. In another embodiment, the VL of
the antibody or fragment thereof comprises an amino acid sequence
identical, except for 20 or fewer conservative amino acid
substitutions, to a sequence selected from the group consisting of
SEQ ID NO: 15, SEQ ID NO: 17, and SEQ ID NO: 8.
[0014] In certain embodiments, the isolated antibody or
antigen-binding fragment thereof specifically binds to CXCL13 and
the VH and VL of the antibody or fragment thereof comprise amino
acid sequences at least 90% identical to VH and VL sequences
selected from the group consisting of: (a) SEQ ID NO: 13 and SEQ ID
NO: 15, respectively; (b) SEQ ID NO: 13 and SEQ ID NO: 17,
respectively; and (c) SEQ ID NO: 3 and SEQ ID NO: 8, respectively.
In yet another embodiment, the isolated antibody or antigen-binding
fragment thereof specifically binds to CXCL13, wherein the VH and
VL of said antibody or fragment thereof comprise amino acid
sequences identical, except for 20 or fewer conservative amino acid
substitutions each, to VH and VL sequences selected from the group
consisting of: (a) SEQ ID NO: 13 and SEQ ID NO: 15, respectively;
(b) SEQ ID NO: 13 and SEQ ID NO: 17, respectively; and (c) SEQ ID
NO: 3 and SEQ ID NO: 8, respectively.
[0015] In one embodiment, the isolated antibody or antigen-binding
fragment thereof specifically binds to CXCL13 and the VH of said
antibody or fragment thereof comprises a Chothia-Kabat heavy chain
complementarity determining region-1 (VH-CDR1) amino acid sequence
identical, except for two or fewer amino acid substitutions, to SEQ
ID NO: 4; a Kabat heavy chain complementarity determining region-2
(VH-CDR2) amino acid sequence identical, except for four or fewer
amino acid substitutions, to SEQ ID NO: 5; a Kabat heavy chain
complementarity determining region-3 (VH-CDR3) amino acid sequence
identical, except for two or fewer amino acid substitutions, to SEQ
ID NO: 6; a Kabat light chain complementarity determining region-1
(VL-CDR1) amino acid sequence identical, except for four or fewer
amino acid substitutions, to SEQ ID NO: 16 or 9; a Kabat light
chain complementarity determining region-2 (VL-CDR2) amino acid
sequence identical, except for two or fewer amino acid
substitutions, to SEQ ID NO: 10; or a Kabat light chain
complementarity determining region-3 (VL-CDR3) amino acid sequence
identical, except for two or fewer amino acid substitutions, to SEQ
ID NO: 11.
[0016] In certain embodiments, the isolated antibody or
antigen-binding fragment thereof specifically binds to CXCL13 and
the VH of said antibody or fragment thereof comprises VH-CDR1,
VH-CDR2, and VH-CDR3 amino acid sequences comprising SEQ ID NOs: 4,
5, and 6, respectively, except for four or fewer amino acid
substitutions in one or more of said VH-CDRs. In another
embodiment, the isolated antibody or antigen-binding fragment
thereof specifically binds to CXCL13 and the VL of said antibody or
fragment thereof comprises VL-CDR1, VL-CDR2, and VL-CDR3 amino acid
sequences comprising SEQ ID NOs: 16 or 9, 10, and 11, respectively,
except for four or fewer amino acid substitutions in one or more of
said VL-CDRs.
[0017] In some embodiments, the antibody or fragment thereof of the
invention inhibits CXCL13 from binding to a CXCL13 receptor. In
certain embodiments, the CXCL13 receptor is CXCR5. In another
embodiment, the antibody or fragment thereof of the invention is
humanized, primatized or chimeric.
[0018] Another aspect of the invention is directed to a composition
comprising the antibody or fragment thereof of the invention, and a
carrier.
[0019] A further aspect of the invention is directed to an isolated
polynucleotide comprising a nucleic acid encoding an antibody VH
polypeptide, wherein the amino acid sequence of said VH polypeptide
is at least 90% identical to a sequence selected from the group
consisting of SEQ ID NO: 12 and SEQ ID NO: 2. In another aspect,
the invention is directed to an isolated polynucleotide comprising
a nucleic acid encodes an antibody VL polypeptide, wherein the
amino acid sequence of said VL polypeptide is at least 90%
identical to a sequence selected from the group consisting of SEQ
ID NO: 7 and SEQ ID NO14; and wherein an antibody or antigen
binding fragment thereof comprising said VL polypeptide
specifically binds to CXCL13.
[0020] In one embodiment, the isolated polynucleotide comprises a
nucleic acid encoding an antibody VH polypeptide, wherein the amino
acid sequence of the VH polypeptide is identical, except for 20 or
fewer conservative amino acid substitutions, to a sequence selected
from the group consisting of SEQ ID NO: 2 and SEQ ID NO: 12. In
another embodiment, the isolated polynucleotide comprises a nucleic
acid encoding an antibody VL polypeptide, wherein the amino acid
sequence of the VL polypeptide is identical, except for 20 or fewer
conservative amino acid substitutions, to a sequence selected from
the group consisting of SEQ ID NO: 7, SEQ ID NO: 14, and SEQ ID NO:
18; and wherein an antibody or antigen binding fragment thereof
comprising said VL polypeptide specifically binds to CXCL13.
[0021] A further aspect of the invention is directed to a vector
comprising the polynucleotide of the invention. Another aspect is
directed to a host cell comprising a vector of the invention. The
invention is also directed to methods of producing an antibody or
fragment thereof which specifically binds CXCL13, comprising
culturing a host cell of the invention, and recovering said
antibody, or fragment thereof.
[0022] Another aspect of the invention is directed to methods for
neutralizing CXCL 13 in an animal, comprising administering to said
animal a composition comprising: an isolated antibody or fragment
thereof or a composition of the invention; and a pharmaceutically
acceptable carrier.
[0023] Further embodiments of the invention are directed to methods
for treating an autoimmune disease or an inflammatory disease or
cancer in an animal in need of treatment, comprising administering
to said animal a composition comprising: an isolated antibody or
fragment thereof or a composition of the invention; and a
pharmaceutically acceptable carrier. In some embodiments, the
autoimmune disease or said inflammatory disease is multiple
sclerosis, Systemic Lupus Erythematosis (SLE), or arthritis, e.g.,
rheumatoid arthritis.
[0024] A further aspect of the invention is directed to methods for
reducing or inhibiting gastric lymphoid follicles in an animal,
comprising administering to said animal a composition comprising an
isolated antibody or fragment thereof of the invention and a
pharmaceutically acceptable carrier. A further embodiment of the
invention is directed to a method for preventing or treating
mucosa-associated lymphoid tissue (MALT) lymphoma or a gastric or
duodenal ulcer in an animal in need of prevention or treatment,
comprising administering to said animal a composition comprising an
isolated antibody or fragment thereof of the invention and a
pharmaceutically acceptable carrier. In one embodiment, the animal
has been infected with a Heliobacter bacterium. In one embodiment
the Heliobacter bacterium is H. pylori or H. heilmannii.
BRIEF DESCRIPTION OF THE DRAWINGS/FIGURES
[0025] FIG. 1. Specificity ELISA results showing the binding of
mouse anti-human CXCL13 antibodies (3D2 and 3C9) to recombinant
human CXCL13 (1A), recombinant mouse CXCL13 (1B), and recombinant
cynomolgus monkey CXCL13 (1C) compared to antibody controls (mouse
MAb 801 and/or rat MAb 470), EC50 values are shown and were
obtained with four-parameter sigmoidal curve fit (curves are shown
on the graph; the R.sup.2 for the curves that produced EC50 values
was 0.99).
[0026] FIG. 2. Epitope Competition ELISA results showing the
percent inhibition of biotinylated 3D2 binding to human CXCL13 for
mouse anti-human CXCL13 antibodies (3C9 and 3D2) compared to
results with no competitor or MAb 801.
[0027] FIG. 3. Capture Epitope Competition ELISA results showing
3D2 inhibition of biotin-3C9 binding to native or recombinant human
CXCL13 (3A) and biotin-3D2 binding to native or recombinant mouse
CXCL13 (3B). Curves were fitted using four-parameter sigmoidal
curve fit (curves are shown on the graph; the R.sup.2=0.99). The
differences in EC50 values were analyzed by unpaired t-test and
were found to be P>0.05.
[0028] FIG. 4. B-cell migration results showing the effect of 3D2
and 3C9 on human CXCL13 induced migration of human pre-B-697-hCXCR5
cells (4A) and human SDF-1 alpha induced migration of
pre-B-697-hCXCR4 cells (4B). Mouse IgG was used as a negative
control. MAb 801 was used as a positive control for inhibition of
human CXCL13 migration, and MAb 87A was used as a positive control
for inhibition of human SDF-1 alpha-induced migration.
[0029] FIG. 5. Percent inhibition of splenocyte migration in
C57Black/6 by 3D2, MAb 470, Mouse IgG (control), or Rat IgG
(control) (5A) and in SJL/J by 3D2, 3C9, MAb 470, or Mouse IgG
(control) (5B). The results are presented as mean of two
(C57Black/6 migration) independent experiments+/-SD and three
(SJL/J migration) independent experiments+/-SEM. A comparison of
the effect of 3D2 on. C57Black/6 and SJL/J migration (5C) was
analyzed by unpaired t-test which produced P value>0.05. Curves
were fitted using four-parameter sigmoidal curve fit (curves are
shown on the graph; R.sup.2=0.99).
[0030] FIG. 6. CXCL13-mediated endocytosis results for human
CXCL13-mediated endocytosis (6A) and mouse CXCL13-mediated
endocytosis (6B) of human and mouse CXCR5 receptors by 3D2 or
controls (MAb 470 and/or Mouse IgG). A comparison of human and
mouse CXCL13-mediated endocytosis EC50 values was calculated from
sigmoidal dose response curves with R.sup.2 values equal to 1
(mouse endocytosis) and 0.994 (human endocytosis) is shown (6C).
The data comparing 3D2 effect on human and mouse receptor
endocytosis was analyzed by unpaired t-test which produced P
value>0.05.
[0031] FIG. 7. EAE disease progression in mice treated with 3D2
(start at Day 0), 3D2 (start at Score>1), or Mouse IgG control
(RR-EAE-1 Study). Each data point represents a mean of scores taken
from 9 mice. Group means (GMS) were compared by using one-way ANOVA
followed by Bonferroni's multiple comparison post test.
[0032] FIG. 8. EAE disease progression in mice treated with 3D2
(start at Day 0), 3D2 (start at Day 6), 3D2 (start at Day>2), or
Mouse IgG control (RR-EAE-2 Study). Each data point represents a
mean of scores taken from 9 mice. Group means (GMS) were compared
by using one-way ANOVA followed by Bonferroni's multiple comparison
post test.
[0033] FIG. 9. Kidney pathology in mice with advanced lupus
nephritis after 3D2 or Mouse IgG (control) treatment (SLE-1 Study).
For proteinurea scores (9A) and kidney pathology scores for
Glomerulonephritis, Interstitial nephritis, and Vasculitis (9B),
each data point represents mean of ten measurements.
[0034] FIG. 10. Kidney pathology in mice with early lupus disease
after 3D2 and Mouse IgG (control) treatment (SLE-2 Study). For
proteinurea scores (10A) and kidney pathology scores for
Glomerulonephritis and Interstitial nephritis (10B) each data point
represents 7 mice from 3D2-treated croup and 9 mice from mouse
IgG-treated group.
[0035] FIG. 11: Histology sections showing the effect of 3D2 on the
number of germinal centers (GCs) and primary follicles in lupus
mouse spleen. Spleen sections were stained with GL-7 (GC stain),
B220 antibody (B cell marker), or antibody against follicular
dendritic cells (FDCs) from 3D2-treated (11A) and mouse IgG-treated
(11B) NZB/NZWF1 mice.
[0036] FIG. 12. Primary follicles and GC size in spleen of lupus
mice treated with 3D2. Values are shown as mean+/-SEM with 5 mice
per group. Mice treated with 3D2 ("tx") showed a trend towards
decreased numbers of GCs when expressed as a ratio of primary:
secondary (GC) follicles (p=0.19) (12A) and a significant decrease
in GC size (p=0.03) (12B).
[0037] FIG. 13. Polynucleotide and amino acid sequences of 3D2
Variable Heavy Chain (H1609) and Variable Light Chain (L0293).
Complementarity determining regions (CDRs) are underlined.
[0038] FIG. 14. Amino acid sequences for humanization of chimeric
3D2 showing the modification of Variable Heavy Chain H1609 to H2177
(14A) and Variable Light Chain L0293 to L5055 to L5140 (14B). The
putative glycosylation site and complementarity determining regions
(CDRs) are boxed.
[0039] FIG. 15. Polynucleotide and amino acid sequences of MAb 5261
Variable Heavy and Light Chains (H2177/L5140) and MAb 5080 Variable
Heavy and Light Chains (H2177/L5055). Complementarity determining
regions (CDR) are underlined.
[0040] FIG. 16. Specificity ELISA results for MAb 5261, MAb 5080,
MAb 1476, and Human Isotype Control binding to recombinant human
(16A), cynomolgus monkey (16B) and mouse (16C) CXCL13. Each data
point represents mean of triplicate measurements. EC50 values were
calculated from four-parameter sigmoidal curve fit (curves are
shown on the graph; R.sup.2 for the curves that produced EC50
values were 0.99). NB=no binding.
[0041] FIG. 17. Capture Epitope Competition ELISA results for MAb
5261, MAb 5080, and 3D2 binding to native human (17A) and native
mouse (17B) CXCL13. Each data point represents an average of
duplicate measurements from one of at least three independent
experiments. Curves were fitted using four-parameter sigmoidal
curve fit (curves are shown on the graph; R.sup.2=0.99).
[0042] FIG. 18. Percent Inhibition of human pre-B-697-hCXCR5 (18A)
and human tonsillar cell (18B) migration by MAb 5261. Data
represent an average of triplicate measurements+/-SEM from one of
at least three experiments. Curves were fitted using four-parameter
sigmoidal curve fit (curves are shown on the graph;
R.sup.2=0.98-0.99).
[0043] FIG. 19. Percent Inhibition of SJL/J (19A) and C57Black/6
(19B) Splenocyte Migration by MAb 5261. Data from representative
experiments are shown as mean of duplicate measurements+/-SD.
[0044] FIG. 20. Percent Inhibition of human CXCL13-mediated
internalization of human CXCR5 receptor by MAL 5261 and Isotype
Control. Data are average of triplicate measurements from one of at
least three independent experiments. Curve was fitted using
four-parameter sigmoidal curve fit (curves are shown on the graph;
R.sup.2=0.99).
[0045] FIG. 21. Polynucleotide and amino acid sequence of MAb 5378
Variable Heavy Chain (H5188) and Variable Light Chain (L5153).
Complementarity determining regions (CDRs) are underlined.
[0046] FIG. 22. Epitope Competition ELISA results for MAb 5378, MAb
5261, and MAb 470.
[0047] FIG. 23. Specificity ELISA results for MAb 5378, 3D2, and
Mouse Isotype Control binding to recombinant human (23A),
cynomolgus monkey (23B) and mouse (23C) CXCL13. Each data point
represents mean of triplicate measurements. EC50 values were
calculated from four-parameter sigmoidal curve fit (curves are
shown on the graph; R.sup.2 for the curves that produced EC50
values were 0.99).
[0048] FIG. 24. Percent Inhibition of human pre-B-697-hCXCR5 (24A),
human tonsillar cells (24B) and C57Black6 mouse spleenocyte (24C)
migration by MAb 5261 or MAb 5378 (24A-B) and MAb 5378 or 3D2
(24C). Data represent an average of triplicate measurements+/-SEM
from one of at least three experiments. Curves were fitted using
four-parameter sigmoidal curve fit (curves are shown on the graph;
R.sup.2=0.99).
[0049] FIG. 25. Percent Inhibition of human CXCL13-mediated
internalization of human CXCR5 receptor by MAb 5378, MAb 5261, 3D2,
Mouse Isotype Control, or Human Isotype Control. Data points for
5261 and 5378 represent average of measurements from two
independent experiments. Data points for 3D2 and Isotype Controls
represent average of triplicate measurements from a single
experiment. Curve was fitted using four-parameter sigmoidal curve
fit (curves are shown on the graph; R.sup.2=0.99). NE=no
effect.
[0050] FIG. 26. Collagen-induced arthritis (CIA) disease
progression in mice treated with MAb 5376, etanercept, or Mouse IgG
(control) (CIA-1 Study). Each data point represents a mean of
scores taken from 10 mice. Group means were compared by using
one-way ANOVA followed by Bonferroni's multiple comparison post
test.
[0051] FIG. 27. Collagen-induced arthritis (CIA) disease
progression in mice treated with MAb 5378, etanercept, MAb 470, or
Mouse IgG (control) (CIA-2 Study). Each data point represents a
mean of scores taken from 10 mice. Group means were compared by
using one-way ANOVA followed by Bonferroni's multiple comparison
post test.
[0052] FIG. 28. Germinal center formation in NP-CGG immunized mice
treated with MAb 5378, Mouse Isotype Control, or no treatment (GC-1
Study). Each spleen data point represents a mean of values measured
from three mice. Each lymph node data point represents a single
value obtained from pooled cells collected from three mice.
[0053] FIG. 29. Treatment schedule for H. heilmannii infection of
mice and antibody administration.
[0054] FIG. 30. H. heilmannii specific 16s rRNA genes were
amplified in all gastric samples obtained from H. heilmannii
infected mice including isotype control antibody treatment and
anti-CXCL13 antibody treatment. Positive control (P) and negative
control (N) are also shown.
[0055] FIG. 31. The mRNA expression level of CXCL 13 in the gastric
mucosa of H. heilmannii (HH) infected wild-type (WT) mice 1 month
(31A) and 3 months (31B) after infection as determined by real-time
quantitative PCR (values are normalized to mouse beta-actin
expression levels in each sample).
[0056] FIG. 32. The expression of CXCL13 mkNA and .beta.-actin in
the stomach of H. heilmannii infected mice after isotype control
antibody or anti-CXCL13 antibody treatment (upper panel). The
expression of CXCL13 mRNA and .beta.-actin in the stomach of
noninfected mice (lower panel). Positive control (P) and negative
control (N) are also shown.
[0057] FIG. 33. Hematoxylin and eosin (H&E) stained stomach
samples from isotype control antibody treated mouse (upper left
panel) and anti-CXCL13 antibody treated mouse (upper right panel)
three months after H. heilmannii infection. The lower panel shows
the number of gastric lymphoid follicles identified in stomach
samples from isotype control antibody and anti-CXCL13 antibody
treated mice.
DETAILED DESCRIPTION OF THE INVENTION
I. Definitions
[0058] It is to be noted that the term "a" or "an" entity refers to
one or more of that entity;
[0059] for example, "an anti-CXCL13 antibody" is understood to
represent one or more anti-CXCL13 antibodies. As such, the terms
"a" (or "an"), "one or more," and "at least one" can be used
interchangeably herein.
[0060] As used herein, the term "tumor" refers to all neoplastic
cell growth and proliferation, whether malignant or benign, and all
cancerous and pre-cancerous cells and tissues.
[0061] The terms, "cancer" and "cancerous" refer to or describe the
physiological condition in mammals that is typically characterized
by unregulated cell growth. Examples of cancer include but are not
limited to carcinomas, lymphomas and leukemias.
[0062] As used herein, the term "polypeptide" is intended to
encompass a singular "polypeptide" as well as plural
"polypeptides," and refers to a molecule composed of monomers
(amino acids) linearly linked by amide bonds (also known as peptide
bonds). The term "polypeptide" refers to any chain or chains of two
or more amino acids, and does not refer to a specific length of the
product. Thus, peptides, dipeptides, tripeptides, oligopeptides,
"protein," "amino acid chain," or any other term used to refer to a
chain or chains of two or more amino acids, are included within the
definition of "polypeptide," and the term "polypeptide" may be used
instead of, or interchangeably with any of these terms. The term
"polypeptide" is also intended to refer to the products of
post-expression modifications of the polypeptide, including without
limitation glycosylation, acetylation, phosphorylation, amidation,
derivatization by known protecting/blocking groups, proteolytic
cleavage, or modification by non-naturally occurring amino acids. A
polypeptide may be derived from a natural biological source or
produced by recombinant technology, but is not necessarily
translated from a designated nucleic acid sequence. It may be
generated in any manner, including by chemical synthesis.
[0063] A polypeptide of the invention may be of a size of about 3
or more, 5 or more, 10 or more, 20 or more, 25 or more, 50 or more,
75 or more, 100 or more, 200 or more, 500 or more, 1,000 or more,
or 2,000 or more amino acids. Polypeptides may have a defined
three-dimensional structure, although they do not necessarily have
such structure. Polypeptides with a defined three-dimensional
structure are referred to as folded, and polypeptides that do not
possess a defined three-dimensional structure, but rather can adopt
a large number of different conformations, are referred to as
unfolded. As used herein, the term glycoprotein refers to a protein
coupled to at least one carbohydrate moiety that is attached to the
protein via an oxygen-containing or a nitrogen-containing side
chain of an amino acid residue, e.g., a serine residue or an
asparagine residue.
[0064] By an "isolated" polypeptide or a fragment, variant, or
derivative thereof is intended a polypeptide that is not in its
natural milieu. No particular level of purification is required.
For example, an isolated polypeptide can be removed from its native
or natural environment. Recombinantly produced polypeptides and
proteins expressed in host cells are considered isolated for
purpose of the invention, as are native or recombinant polypeptides
that have been separated, fractionated, or partially or
substantially purified by any suitable technique.
[0065] Also included as polypeptides of the present invention are
fragments, derivatives, analogs, or variants of the foregoing
polypeptides, and any combination thereof. The terms "fragment,"
"variant," "derivative," and "analog" when referring to anti-CXCL13
antibodies or antibody polypeptides of the present invention
include any polypeptides that retain at least some of the
antigen-binding properties of the corresponding antibody or
antibody polypeptide of the invention. Fragments of polypeptides of
the present invention include proteolytic fragments, as well as
deletion fragments, in addition to specific antibody fragments
discussed elsewhere herein. Variants of anti-CXCL13 antibodies and
antibody polypeptides of the present invention include fragments as
described above, and also polypeptides with altered amino acid
sequences due to amino acid substitutions, deletions, or
insertions. Variants may occur naturally or be non-naturally
occurring. Non-naturally occurring variants may be produced using
art-known mutagenesis techniques. Variant polypeptides may comprise
conservative or non-conservative amino acid substitutions,
deletions, or additions. Variant polypeptides may also be referred
to herein as "polypeptide analogs." As used herein a "derivative"
of an anti-CXCL13 antibody or antibody polypeptide refers to a
subject polypeptide having one or more residues chemically
derivatized by reaction of a functional side group. Also included
as "derivatives" are those peptides that contain one or more
naturally occurring amino acid derivatives of the twenty standard
amino acids. For example, 4-hydroxyproline may be substituted for
proline; 5-hydroxylysine may be substituted for lysine;
3-methylhistidine may be substituted for histidine; homoserine may
be substituted for serine; and ornithine may be substituted for
lysine. Derivatives of anti-CXCL13 antibodies and antibody
polypeptides of the present invention, may include polypeptides
that have been altered so as to exhibit additional features not
found on the reference antibody or antibody polypeptide of the
invention.
[0066] The term "polynucleotide" is intended to encompass a
singular nucleic acid as well as plural nucleic acids, and refers
to an isolated nucleic acid molecule or construct, e.g., messenger
RNA (mRNA) or plasmid DNA (pDNA). A polynucleotide may comprise a
conventional phosphodiester bond or a non-conventional bond (e.g.,
an amide bond, such as found in peptide nucleic acids (PNA)). The
term "nucleic acid" refers to any one or more nucleic acid
segments, e.g., DNA or RNA fragments, present in a polynucleotide.
By "isolated" nucleic acid or polynucleotide is intended a nucleic
acid molecule, DNA or RNA, that has been removed from its native
environment. For example, a recombinant polynucleotide encoding an
anti-CXCL13 binding molecule, e.g., an antibody or antigen binding
fragment thereof, contained in a vector is considered isolated for
the purposes of the present invention. Further examples of an
isolated polynucleotide include recombinant polynucleotides
maintained in heterologous host cells or purified (partially or
substantially) polynucleotides in solution. Isolated RNA molecules
include in vivo or in vitro RNA transcripts of polynucleotides of
the present invention. Isolated polynucleotides or nucleic acids
according to the present invention further include such molecules
produced synthetically. In addition, a polynucleotide or a nucleic
acid may be or may include a regulatory element such as a promoter,
ribosome binding site, or a transcription terminator.
[0067] As used herein, a "coding region" is a portion of nucleic
acid that consists of codons translated into amino acids. Although
a "stop codon" (TAG, TGA, or TAA) is not translated into an amino
acid, it may be considered to be part of a coding region, but any
flanking sequences, for example promoters, ribosome binding, sites,
transcriptional terminators, introns, and the like, are not part of
a coding region. Two or more coding regions of the present
invention can be present in a single polynucleotide construct,
e.g., on a single vector, or in separate polynucleotide constructs,
e.g., on separate (different) vectors. Furthermore, any vector may
contain a single coding region, or may comprise two or more coding
regions, e.g., a single vector may separately encode an
immunoglobulin heavy chain variable region and an immunoglobulin
light chain variable region. In addition, a vector, polynucleotide,
or nucleic acid of the invention may encode heterologous coding
regions, either fused or unfused to a nucleic acid encoding an
anti-CXCL13 antibody or fragment, variant, or derivative thereof.
Heterologous coding regions include without limitation specialized
elements or motifs, such as a secretory signal peptide or a
heterologous functional domain.
[0068] In certain embodiments, the polynucleotide or nucleic acid
is DNA. In the case of DNA, a polynucleotide comprising a nucleic
acid that encodes a polypeptide normally may include a promoter
and/or other transcription or translation control elements operably
associated with one or more coding regions. An operable association
is when a coding region for a gene product, e.g., a polypeptide, is
associated with one or more regulatory sequences in such a way as
to place expression of the gene product under the influence or
control of the regulatory sequence(s). Two DNA fragments (such as a
polypeptide coding region and a promoter associated therewith) are
"operably associated" if induction of promoter function results in
the transcription of mRNA encoding the desired gene product and if
the nature of the linkage between the two DNA fragments does not
interfere with the ability of the expression regulatory sequences
to direct the expression of the gene product or interfere with the
ability of the DNA template to be transcribed. Thus, a promoter
region would be operably associated with a nucleic acid encoding a
polypeptide if the promoter was capable of effecting transcription
of that nucleic acid. The promoter may be a cell-specific promoter
that directs substantial transcription of the DNA only in
predetermined cells. Other transcription control elements, besides
a promoter, for example enhancers, operators, repressors, and
transcription termination signals, can be operably associated with
the polynucleotide to direct cell-specific transcription. Suitable
promoters and other transcription control regions are disclosed
herein.
[0069] A variety of transcription control regions are known to
those skilled in the art. These include, without limitation,
transcription control regions that function in vertebrate cells,
such as, but not limited to, promoter and enhancer segments from
cytomegaloviruses (the immediate early promoter, in conjunction
with intron-A), simian virus 40 (the early promoter), and
retroviruses (such as Rous sarcoma virus). Other transcription
control regions include those derived from vertebrate genes such as
actin, heat shock protein, bovine growth hormone and rabbit
.beta.-globin, as well as other sequences capable of controlling
gene expression in eukaryotic cells. Additional suitable
transcription control regions include tissue-specific promoters and
enhancers as well as lymphokine-inducible promoters (e.g.,
promoters inducible by interferons or interleukins).
[0070] Similarly, a variety of translation control elements are
known to those of ordinary skill in the art. These include, but are
not limited to, ribosome binding sites, translation initiation and
termination codons, and elements derived from picornaviruses
(particularly an internal ribosome entry site, or IRES, also
referred to as a CITE sequence).
[0071] In other embodiments, a polynucleotide of the present
invention is RNA, for example, in the form of messenger RNA
(mRNA).
[0072] Polynucleotide and nucleic acid coding regions of the
present invention may be associated with additional coding regions
that encode secretory or signal peptides, which direct the
secretion of a polypeptide encoded by a polynucleotide of the
present invention. According to the signal hypothesis, proteins
secreted by mammalian cells have a signal peptide or secretory
leader sequence that is cleaved from the mature protein once export
of the growing protein chain across the rough endoplasmic reticulum
has been initiated. Those of ordinary skill in the art are aware
that polypeptides secreted by vertebrate cells generally have a
signal peptide fused to the N-terminus of the polypeptide, which is
cleaved from the complete or "full length" polypeptide to produce a
secreted or "mature" form of the polypeptide. In certain
embodiments, the native signal peptide, e.g., an immunoglobulin
heavy chain or light chain signal peptide is used, or a functional
derivative of that sequence that retains the ability to direct the
secretion of the polypeptide that is operably associated with it.
Alternatively, a heterologous mammalian signal peptide, or a
functional derivative thereof, may be used. For example, the
wild-type leader sequence may be substituted with the leader
sequence of human tissue plasminogen activator (TPA) or mouse
.beta.-glucuronidase.
[0073] A "binding molecule" or "antigen binding molecule" of the
present invention refers in its broadest sense to a molecule that
specifically binds an antigenic determinant. In one embodiment, the
binding molecule specifically binds to CXCL13 (also called BCA-1).
In another embodiment, a binding molecule of the invention is an
antibody or an antigen binding fragment thereof, e.g., an
anti-CXCL13 antibody. In another embodiment, a binding molecule of
the invention comprises at least one heavy or light chain CDR of an
antibody molecule. In another embodiment, a binding molecule of the
invention comprises at least two CDRs from one or more antibody
molecules. In another embodiment, a binding molecule of the
invention comprises at least three CDRs from one or more antibody
molecules. In another embodiment, a binding molecule of the
invention comprises at least four CDRs from one or more antibody
molecules. In another embodiment, an a binding molecule of the
invention comprises at least five CDRs from one or more antibody
molecules. In another embodiment, a binding molecule of the
invention comprises at least six CDRs from one or more antibody
molecules. In certain embodiments, one or more of the CDRs is from
MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2, or 3C9.
[0074] The present invention is directed to certain anti-CXCL13
antibodies, or antigen-binding fragments, variants, or derivatives
thereof. Unless specifically referring to full-sized antibodies
such as naturally occurring antibodies, the term "anti-CXCL 13
antibodies" encompasses full-sized antibodies as well as
antigen-binding fragments, variants, analogs, or derivatives of
such antibodies, e.g., naturally occurring antibody or
immunoglobulin molecules or engineered antibody molecules or
fragments that bind antigen in a manner similar to antibody
molecules.
[0075] As used herein, "human" or "fully human" antibodies include
antibodies having the amino acid sequence of a human immunoglobulin
and include antibodies isolated from human immunoglobulin libraries
or from animals transgenic for one or more human immunoglobulins
and that do not express endogenous immunoglobulins, as described
infra and, for example, in U.S. Pat. No. 5,939,598 by Kucherlapati
et al. "Human" or "fully human" antibodies also include antibodies
comprising at least the variable domain of a heavy chain, or at
least the variable domains of a heavy chain and a light chain,
where the variable domain(s) have the amino acid sequence of human
immunoglobulin variable domains(s).
[0076] "Human" or "fully human" antibodies also include "human" or
"fully human" antibodies, as described above, that comprise,
consist essentially of, or consist of, variants (including
derivatives) of antibody molecules (e.g., the VH regions and/or VL
regions) described herein, which antibodies or fragments thereof
immunospecifically bind to a CXCL13 polypeptide or fragment or
variant thereof. Standard techniques known to those of skill in the
art can be used to introduce mutations in the nucleotide sequence
encoding a human anti-CXCL13 antibody, including, but not limited
to, site-directed mutagenesis and PCR-mediated mutagenesis which
result in amino acid substitutions. Preferably, the variants
(including derivatives) encode less than 50 amino acid
substitutions, less than 40 amino acid substitutions, less than 30
amino acid substitutions, less than 25 amino acid substitutions,
less than 20 amino acid substitutions, less than 15 amino acid
substitutions, less than 10 amino acid substitutions, less than 5
amino acid substitutions, less than 4 amino acid substitutions,
less than 3 amino acid substitutions, or less than 2 amino acid
substitutions relative to the reference VH region, VHCDR1, VHCDR2,
VHCDR3, VL region, VLCDR1, VLCDR2, or VLCDR3.
[0077] In certain embodiments, the amino acid substitutions are
conservative amino acid substitutions, discussed further below.
Alternatively, mutations can be introduced randomly along all or
part of the coding sequence, such as by saturation mutagenesis, and
the resultant mutants can be screened for biological activity to
identify mutants that retain activity (e.g., the ability to bind a
CXCL13 polypeptide, e.g., human, murine, or both human and murine
CXCL13). Such variants (or derivatives thereof) of "human" or
"fully human" antibodies can also be referred to as human or fully
human antibodies that are "optimized" or "optimized for antigen
binding" and include antibodies that have improved affinity to
antigen.
[0078] The terms "antibody" and "immunoglobulin" are used
interchangeably herein. An antibody or immunoglobulin comprises at
least the variable domain of a heavy chain, and normally comprises
at least the variable domains of a heavy chain and a light chain.
Basic immunoglobulin structures in vertebrate systems are
relatively well understood. See, e.g., Harlow et al. (1988)
Antibodies: A Laboratory Manual (2nd ed.; Cold Spring Harbor
Laboratory Press).
[0079] As will be discussed in more detail below, the term
"immunoglobulin" comprises various broad classes of polypeptides
that can be distinguished biochemically. Those skilled in the art
will appreciate that heavy chains are classified as gamma, mu,
alpha, delta, or epsilon, (.gamma., .mu., .alpha., .delta.,
.epsilon.) with some subclasses among them (e.g.,
.gamma.1-.gamma.4). It is the nature of this chain that determines
the "class" of the antibody as IgG, IgM, IgA IgG, or IgE,
respectively. The immunoglobulin subclasses (isotypes) e.g., IgG1,
IgG2, IgG3, IgG4, IgA1, etc. are well characterized and are known
to confer functional specialization. Modified versions of each of
these classes and isotypes are readily discernable to the skilled
artisan in view of the instant disclosure and, accordingly, are
within the scope of the instant invention. All immunoglobulin
classes are clearly within the scope of the present invention, the
following discussion will generally be directed to the IgG class of
immunoglobulin molecules. With regard to IgG, a standard
immunoglobulin molecule comprises two identical light chain
polypeptides of molecular weight approximately 23,000 Daltons, and
two identical heavy chain polypeptides of molecular weight
53,000-70,000. The four chains are typically joined by disulfide
bonds in a "Y" configuration wherein the light chains bracket the
heavy chains starting at the mouth of the "Y" and continuing
through the variable region.
[0080] Light chains are classified as either kappa or lambda
(.kappa., .lamda.). Each heavy chain class may be bound with either
a kappa or lambda light chain. In general, the light and heavy
chains are covalently bonded to each other, and the "tail" portions
of the two heavy chains are bonded to each other by covalent
disulfide linkages or non-covalent linkages when the
immunoglobulins are generated either by hybridomas, B-cells or
genetically engineered host cells. In the heavy chain, the amino
acid sequences run from an N-terminus at the forked ends of the Y
configuration to the C-terminus at the bottom of each chain.
[0081] Both the light and heavy chains are divided into regions of
structural and functional homology. The terms "constant" and
"variable" are used functionally. In this regard, it will be
appreciated that the variable domains of both the light (VL or VK)
and heavy (VH) chain portions determine antigen recognition and
specificity. Conversely, the constant domains of the light chain
(CL) and the heavy chain (CH1, CH2 or CH3) confer important
biological properties such as secretion, transplacental mobility,
Fc receptor binding, complement binding, and the like. By
convention the numbering of the constant region domains increases
as they become more distal from the antigen binding site or
amino-terminus of the antibody. The N-terminal portion is a
variable region and at the C-terminal portion is a constant region;
the CH3 and CL domains actually comprise the carboxy-terminus of
the heavy and light chain, respectively.
[0082] As indicated herein, the variable region allows the antibody
to selectively recognize and specifically bind epitopes on
antigens. That is, the VL domain and VH domain, or subset of the
complementarity determining regions (CDRs) within these variable
domains, of an antibody combine to form the variable region that
defines a three dimensional antigen binding site. This quaternary
antibody structure forms the antigen binding site present at the
end of each arm of the Y. More specifically, the antigen binding
site is defined by three CDRs on each of the VH and VL chains. In
some instances, e.g., certain immunoglobulin molecules derived from
camelid species or engineered based on camelid immunoglobulins, a
complete immunoglobulin molecule may consist of heavy chains only,
with no light chains. See, e.g., Hamers-Casterman et al., Nature
363:446-448 (1993).
[0083] In naturally occurring antibodies, the six "complementarity
determining regions" or "CDRs" present in each antigen binding
domain are short, non-contiguous sequences of amino acids that are
specifically positioned to form the antigen binding domain as the
antibody assumes its three dimensional configuration in an aqueous
environment. The remainder of the amino acids in the antigen
binding domains, referred to as "framework" regions, show less
inter-molecular variability. The framework regions largely adopt a
.beta.-sheet conformation and the CDRs form loops that connect, and
in some cases form part of, the .beta.-sheet structure. Thus,
framework regions act to form a scaffold that provides for
positioning the CDRs in correct orientation by inter-chain,
non-covalent interactions. The antigen binding domain formed by the
positioned CDRs defines a surface complementary to the epitope on
the immunoreactive antigen. This complementary surface promotes the
non-covalent binding of the antibody to its cognate epitope. The
amino acids comprising the CDRs and the framework regions,
respectively, can be readily identified for any given heavy or
light chain variable domain by one of ordinary skill in the art,
since they have been precisely defined (see below).
[0084] In the case where there are two or more definitions of a
term that is used and/or accepted within the art, the definition of
the term as used herein is intended to include all such meanings
unless explicitly stated to the contrary. A specific example is the
use of the term "complementarity determining region" ("CDR") to
describe the non-contiguous antigen combining sites found within
the variable region of both heavy and light chain polypeptides.
This particular region has been described by Kabat et al. (1983)
U.S. Dept. of Health and Human Services, "Sequences of Proteins of
Immunological Interest" and by Chothia and Lesk, J. Mol. Biol.
196:901-917 (1987), which are incorporated herein by reference,
where the definitions include overlapping or subsets of amino acid
residues when compared against each other. Nevertheless,
application of either definition to refer to a CDR of an antibody
or variants thereof is intended to be within the scope of the term
as defined and used herein. The appropriate amino acid residues
that encompass the CDRs as defined by each of the above cited
references are set forth below in Table 1 as a comparison. The
exact residue numbers that encompass a particular CDR will vary
depending on the sequence and size of the CDR. Those skilled in the
art can routinely determine which residues comprise a particular
CDR given the variable region amino acid sequence of the
antibody.
TABLE-US-00001 TABLE 1 CDR Definitions.sup.1 Kabat Chothia VH CDR1
31-35 26-32 VH CDR2 50-65 52-58 VH CDR3 95-102 95-102 VL CDR1 24-34
26-32 VL CDR2 50-56 50-52 VL CDR3 89-97 91-96 .sup.1Numbering of
all CDR definitions in Table 1 is according to the numbering
conventions set forth by Kabat et al. (see below).
[0085] Kabat et al. also defined a numbering system for variable
domain sequences that is applicable to any antibody. One of
ordinary skill in the art can unambiguously assign this system of
"Kabat numbering" to any variable domain sequence, without reliance
on any experimental data beyond the sequence itself. As used
herein, "Kabat numbering" refers to the numbering system set forth
by Kabat et al. (1983) U.S. Dept. of Health and Human Services,
"Sequence of Proteins of Immunological Interest." Unless otherwise
specified, references to the numbering of specific amino acid
residue positions in an anti-CXCL13 antibody or antigen-binding
fragment, variant, or derivative thereof of the present invention
are according to the Kabat numbering system.
[0086] Antibodies or antigen-binding fragments, variants, or
derivatives thereof of the invention include, but are not limited
to, polyclonal, monoclonal, multispecific, human, humanized,
primatized, or chimeric antibodies, single-chain antibodies,
epitope-binding fragments, e.g., Fab, Fab' and F(ab').sub.2, Fd,
Fvs, single-chain Fvs (scFv), disulfide-linked Fvs (sdFv),
fragments comprising either a VL or VH domain, fragments produced
by a Fab expression library, and anti-idiotypic (anti-Id)
antibodies (including, e.g., anti-Id antibodies to anti-CXCL13
antibodies disclosed herein). ScFv molecules are known in the art
and are described, e.g., in U.S. Pat. No. 5,892,019. Immunoglobulin
or antibody molecules of the invention can be of any type (e.g.,
IgG, IgE, IgM, IgD, IgA, and IgY), class (e.g., IgG1, IgG2, IgG3,
IgG4, IgA1, and IgA2, etc.), or subclass of immunoglobulin
molecule.
[0087] As used herein, the term "heavy chain portion" includes
amino acid sequences derived from an immunoglobulin heavy chain. A
polypeptide comprising a heavy chain portion comprises at least one
of: a CH1 domain, a hinge (e.g., upper, middle, and/or lower hinge
region) domain, a CH2 domain, a CH3 domain, or a variant or
fragment thereof. For example, a binding polypeptide for use in the
invention may comprise a polypeptide chain comprising a CH1 domain;
a polypeptide chain comprising a CH1 domain, at least a portion of
a hinge domain, and a CH2 domain; a polypeptide chain comprising a
CH1 domain and a CH3 domain; a polypeptide chain comprising a CH1
domain, at least a portion of a hinge domain, and a CH3 domain, or
a polypeptide chain comprising a CH1 domain, at least a portion of
a hinge domain, a CH2 domain, and a CH3 domain. In another
embodiment, a polypeptide of the invention comprises a polypeptide
chain comprising a CH3 domain. Further, a binding polypeptide for
use in the invention may lack at least a portion of a CH2 domain
(e.g., all or part of a CH2 domain). As set forth above, it will be
understood by one of ordinary skill in the art that these domains
(e.g., the heavy chain portions) may be modified such that they
vary in amino acid sequence from the naturally occurring
immunoglobulin molecule.
[0088] In certain anti-CXCL13 antibodies, or antigen-binding
fragments, variants, or derivatives thereof disclosed herein, the
heavy chain portions of one polypeptide chain of a multimer are
identical to those on a second polypeptide chain of the multimer.
Alternatively, heavy chain portion-containing monomers of the
invention are not identical. For example, each monomer may comprise
a different target binding site, forming, for example, a bispecific
antibody.
[0089] The heavy chain portions of a binding molecule for use in
the diagnostic and treatment methods disclosed herein may be
derived from different immunoglobulin molecules. For example, a
heavy chain portion of a polypeptide may comprise a C.sub.H1 domain
derived from an IgG1 molecule and a hinge region derived from an
IgG3 molecule. In another example, a heavy chain portion can
comprise a hinge region derived, in part, from an IgG1 molecule
and, in part, from an IgG3 molecule. In another example, a heavy
chain portion can comprise a chimeric hinge derived, in part, from
an IgG1 molecule and, in part, from an IgG4 molecule.
[0090] As used herein, the term "light chain portion" includes
amino acid sequences derived from an immunoglobulin light chain,
e.g., a kappa or lambda light chain. Preferably, the light chain
portion comprises at least one of a VL or CL domain.
[0091] Anti-CXCL13 antibodies, or antigen-binding fragments,
variants, or derivatives thereof disclosed herein may be described
or specified in terms of the epitope(s) or portion(s) of an
antigen, e.g., a target polypeptide disclosed herein (e.g., CXCL13)
that they recognize or specifically bind. The portion of a target
polypeptide that specifically interacts with the antigen binding
domain of an antibody is an "epitope," or an "antigenic
determinant." A target polypeptide may comprise a single epitope,
but typically comprises at least two epitopes, and can include any
number of epitopes, depending on the size, conformation, and type
of antigen. Furthermore, it should be noted that an "epitope" on a
target polypeptide may be or may include non-polypeptide elements,
e.g., an epitope may include a carbohydrate side chain.
[0092] The minimum size of a peptide or polypeptide epitope for an
antibody is thought to be about four to five amino acids. Peptide
or polypeptide epitopes preferably contain at least seven, more
preferably at least nine and most preferably between at least about
15 to about 30 amino acids. Since a CDR can recognize an antigenic
peptide or polypeptide in its tertiary form, the amino acids
comprising an epitope need not be contiguous, and in some cases,
may not even be on the same peptide chain. A peptide or polypeptide
epitope recognized by anti-CXCL13 antibodies of the present
invention may contain a sequence of at least 4, at least 5, at
least 6, at least 7, more preferably at least 8, at least 9, at
least 10, at least 15, at least 20, at least 25, or between about
15 to about 30 contiguous or non-contiguous amino acids of
CXCL13.
[0093] By "specifically binds," it is generally meant that an
antibody binds to an epitope via its antigen binding domain, and
that the binding entails some complementarity between the antigen
binding domain and the epitope. According to this definition, an
antibody is said to "specifically bind" to an epitope when it binds
to that epitope, via its antigen binding domain more readily than
it would bind to a random, unrelated epitope. The term
"specificity" is used herein to qualify the relative affinity by
which a certain antibody binds to a certain epitope. For example,
antibody "A" may be deemed to have a higher specificity for a given
epitope than antibody "B," or antibody "A" may be said to bind to
epitope "C" with a higher specificity than it has for related
epitope "D."
[0094] By "preferentially binds," it is meant that the antibody
specifically binds to an epitope more readily than it would bind to
a related, similar, homologous, or analogous epitope. Thus, an
antibody that "preferentially binds" to a given epitope would more
likely bind to that epitope than to a related epitope, even though
such an antibody may cross-react with the related epitope.
[0095] By way of non-limiting example, an antibody may be
considered to bind a first epitope preferentially if it binds said
first epitope with a dissociation constant (K.sub.D) that is less
than the antibody's K.sub.D for the second epitope. In another
non-limiting example, an antibody may be considered to bind a first
antigen preferentially if it binds the first epitope with an
K.sub.D that is at least one order of magnitude less than the
antibody's K.sub.D for the second epitope. In another non-limiting
example, an antibody may be considered to bind a first epitope
preferentially if it binds the first epitope with an K.sub.D that
is at least two orders of magnitude less than the antibody's
K.sub.D for the second epitope.
[0096] In another non-limiting example, an antibody may be
considered to bind a first epitope preferentially if it binds the
first epitope with an off rate (k(off)) that is less than the
antibody's k(off) for the second epitope. In another non-limiting
example, an antibody may be considered to bind a first epitope
preferentially if it binds the first epitope with an k(off) that is
at least one order of magnitude less than the antibody's k(off) for
the second epitope. In another non-limiting example, an antibody
may be considered to bind a first epitope preferentially if it
binds the first epitope with an k(off) that is at least two orders
of magnitude less than the antibody's k(off) for the second
epitope. An antibody or antigen-binding fragment, variant, or
derivative disclosed herein may be said to bind a target
polypeptide disclosed herein (e.g., CXCL13, e.g., human, murine, or
both human and murine CXCL13) or a fragment or variant thereof with
an off rate (k(off)) of less than or equal to 5.times.10.sup.-2
sec.sup.-1, 10.sup.-2 sec.sup.-1, or 5.times.10.sup.-3 sec.sup.-1.
In certain embodiments, the k(off) is less than or equal to about
3.times.10.sup.-2, e.g., wherein the antibody is 3D2 and the CXCL13
is human or mouse. In another embodiment, the k(off) is less than
or equal to about 3.times.10.sup.-3, e.g., wherein the antibody is
MAb 5261 and the CXCL13 is human or mouse. In another embodiment,
the k(off) is less than or equal to about 4.times.10.sup.-3, e.g.,
wherein the antibody is MAb 5378 and the CXCL13 is human or mouse.
In one embodiment, an antibody of the invention may be said to bind
a target polypeptide disclosed herein (e.g., CXCL13, e.g., human,
murine, or both human and murine CXCL13) or a fragment or variant
thereof with an off rate (k(off)) less than or equal to
5.times.10.sup.-4 sec.sup.-1, 10.sup.-4 sec.sup.-1,
5.times.10.sup.-5 sec.sup.-1, or 10.sup.-5 sec.sup.-1,
5.times.10.sup.-6 sec.sup.-1, 10.sup.-6 sec.sup.1,
5.times.10.sup.-7 sec.sup.-1 or 10.sup.-7 sec.sup.-1.
[0097] An antibody or antigen-binding fragment, variant, or
derivative disclosed herein may be said to bind a target
polypeptide disclosed herein (e.g., CXCL13, e.g., human, murine, or
both human and murine CXCL13) or a fragment or variant thereof with
an on rate (k(on)) of greater than or equal to 10.sup.3 M.sup.-1
sec.sup.-1, 5.times.10.sup.3 M.sup.-1 sec.sup.-1, 10.sup.4 M.sup.-1
sec.sup.-1. In certain embodiments, the k(on) is greater than or
equal to about 5.times.10.sup.5, e.g., wherein the antibody is 3D2
and the CXCL13 is human; or the k(on) is greater than or equal to
about 1.times.10.sup.5, e.g., wherein the antibody is 3D2 and the
CXCL13 is mouse. In another embodiment, the k(on) is greater than
or equal to about 1.times.10.sup.6, e.g., wherein the antibody is
MAb 5261 and the CXCL13 is human or mouse. In another embodiment,
the k(on) is greater than or equal to about 1.times.10.sup.6, e.g.,
wherein the antibody is MAb 5378 and the CXCL 13 is human or mouse.
In one embodiment, an antibody of the invention may be said to bind
a target polypeptide disclosed herein (e.g., CXCL13, e.g., human,
murine, or both human and murine CXCL13) or a fragment or variant
thereof with an on rate (k(on)) greater than or equal to 10.sup.5
M.sup.-1 sec.sup.-1, 5.times.10.sup.5 M.sup.-1 sec.sup.-1, 10.sup.6
M.sup.-1 sec.sup.-1, or 5.times.10.sup.6 M.sup.-1 sec.sup.-1 or
10.sup.7 M.sup.-1 sec.sup.-1
[0098] An antibody is said to competitively inhibit binding of a
reference antibody, e.g., an anti-CXCL3 antibody disclosed herein,
e.g., MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2, or 3C9, to a
given epitope if it preferentially binds to that epitope to the
extent that it blocks, to some degree, binding of the reference
antibody to the epitope. Competitive inhibition may be determined
by any method known in the art, for example, competition ELISA
assays. An antibody may be said to competitively inhibit binding of
the reference antibody to a given epitope by at least 90%, at least
80%, at least 70%, at least 60%, or at least 50%.
[0099] As used herein, the term "affinity" refers to a measure of
the strength of the binding of an individual epitope with the CDR
of an immunoglobulin molecule. See, e.g., Harlow et al. (1988)
Antibodies: A Laboratory Manual (Cold Spring Harbor Laboratory
Press, 2nd ed.) pages 27-28. As used herein, the term "avidity"
refers to the overall stability of the complex between a population
of immunoglobulins and an antigen, that is, the functional
combining strength of an immunoglobulin mixture with the antigen.
See, e.g., Harlow at pages 29-34. Avidity is related to both the
affinity of individual immunoglobulin molecules in the population
with specific epitopes, and also the valencies of the
immunoglobulins and the antigen. For example, the interaction
between a bivalent monoclonal antibody and an antigen with a highly
repeating epitope structure, such as a polymer, would be one of
high avidity.
[0100] Anti-CXCL13 antibodies or antigen-binding fragments,
variants, or derivatives thereof of the invention may also be
described or specified in terms of their cross-reactivity. As used
herein, the term "cross-reactivity" refers to the ability of an
antibody, specific for one antigen, to react with a second antigen;
a measure of relatedness between two different antigenic
substances. Thus, an antibody is cross reactive if it binds to an
epitope other than the one that induced its formation. The cross
reactive epitope generally contains many of the same complementary
structural features as the inducing epitope, and in some cases, may
actually fit better than the original.
[0101] For example, certain antibodies have some degree of
cross-reactivity, in that they bind related, but non-identical
epitopes, e.g., epitopes with at least 95%, at least 90%, at least
85%, at least 80%, at least 75%, at least 70%, at least 65%, at
least 60%, at least 55%, and at least 50% identity (as calculated
using methods known in the art and described herein) to a reference
epitope. An antibody may be said to have little or no
cross-reactivity if it does not bind epitopes with less than 95%,
less than 90%, less than 85%, less than 80%, less than 75%, less
than 70%, less than 65%, less than 60%, less than 55%, and less
than 50% identity (as calculated using methods known in the art and
described herein) to a reference epitope. An antibody may be deemed
"highly specific" for a certain epitope, if it does not bind any
other analog, ortholog, or homolog of that epitope.
[0102] Anti-CXCL13 binding molecules, e.g., antibodies or
antigen-binding fragments, variants or derivatives thereof, of the
invention may also be described or specified in terms of their
binding affinity to a polypeptide of the invention, e.g., CXCL13,
e.g., human, murine, or both human and murine CXCL13. In certain
embodiments, the binding affinities of the invention include those
with a dissociation constant or Kd less than or no greater than
5.times.10.sup.-2 M, 10.sup.-2 M, 5.times.10.sup.-3 M, 10.sup.-3 M,
5.times.10.sup.-4 M, 10.sup.-4 M, 5.times.10.sup.-5 M, 10.sup.-5 M,
5.times.10.sup.-6 M, 10.sup.-6 M, 5.times.10.sup.-7 M, 10.sup.-7 M,
5.times.10.sup.-8 M, 10.sup.-8 M, 5.times.10.sup.-9 M, 10.sup.-9 M,
5.times.10.sup.-10 M, 10.sup.-10 M, 5.times.10.sup.-11 M,
10.sup.-11 M, 5.times.10.sup.-12 M, 10.sup.-12 M,
5.times.10.sup.-13 M, 10.sup.-13 M, 5.times.10.sup.-14 M,
10.sup.-14 M, 5.times.10.sup.-15 M, or 10.sup.-15 M. In one
embodiment, the anti-CXCL13 binding molecule, e.g., an antibody or
antigen binding fragment thereof, of the invention binds human
CXCL13 with a Kd of less than about 5.times.10.sup.-9 M to about
5.times.10.sup.-10 M, e.g., wherein the antibody is MAb 5261 and
the Kd is less than or equal to about 5.times.10.sup.-9M. In
another embodiment, the anti-CXCL13 binding molecule, e.g., an
antibody or antigen binding fragment thereof, of the invention
binds murine CXCL13 with a Kd of less than about 5.times.10.sup.-7
M to about 9.times.10.sup.-9 M, e.g., wherein the antibody is MAb
5261 and the Kd is less than or equal to about
8.times.10.sup.-9M.
[0103] Anti-CXCL13 antibodies or antigen-binding fragments,
variants or derivatives thereof of the invention may be
"multispecific," e.g., bispecific, trispecific, or of greater
multispecificity, meaning that it recognizes and binds to two or
more different epitopes present on one or more different antigens
(e.g., proteins) at the same time. Thus, whether an anti-CXCL13
antibody is "monospecific" or "multispecific," e.g., "bispecific,"
refers to the number of different epitopes with which a binding
polypeptide reacts. Multispecific antibodies may be specific for
different epitopes of a target polypeptide described herein or may
be specific for a target polypeptide as well as for a heterologous
epitope, such as a heterologous polypeptide or solid support
material.
[0104] As used herein the term "valency" refers to the number of
potential binding domains, e.g., antigen binding domains present in
a binding polypeptide or CXCL13 binding molecule, e.g., an antibody
or antigen binding fragment thereof. Each binding domain
specifically binds one epitope. When a binding polypeptide or
CXCL13 binding molecule comprises more than one binding domain,
each binding domain may specifically bind the same epitope, for an
antibody with two binding domains, termed "bivalent monospecific,"
or to different epitopes, for an antibody with two binding domains,
termed "bivalent bispecific." An antibody or antigen binding
fragment thereof may also be bispecific and bivalent for each
specificity (termed "bispecific tetravalent antibodies"). In
another embodiment, tetravalent minibodies or domain deleted
antibodies can be made.
[0105] Bispecific bivalent antibodies, and methods of making them,
are described, for instance in U.S. Pat. Nos. 5,731,168; 5,807,706;
5,821,333; and U.S. Patent Appl. Publ. Nos. 2003/020734 and
2002/0155537, the disclosures of all of which are incorporated by
reference herein. Bispecific tetravalent antibodies, and methods of
making them are described, for instance, in WO 02/096948 and WO
00/44788, the disclosures of both of which are incorporated by
reference herein. See generally, PCT publications WO 93/17715; WO
92/08802; WO 91/00360; WO 92/05793; Tutt et al., J. Immunol.
147:60-69 (1991); U.S. Pat. Nos. 4,474,893; 4,714,681; 4,925,648;
5,573,920; 5,601,819; Kostelny et al., J. Immunol. 148: 1547-1553
(1992).
[0106] As previously indicated, the subunit structures and three
dimensional configuration of the constant regions of the various
immunoglobulin classes are well known. As used herein, the term "VH
domain" includes the amino terminal variable domain of an
immunoglobulin heavy chain and the term "CH1 domain" includes the
first (most amino terminal) constant region domain of an
immunoglobulin heavy chain. The CH1 domain is adjacent to the VH
domain and is amino terminal to the hinge region of an
immunoglobulin heavy chain molecule.
[0107] As used herein the term "CH2 domain" includes the portion of
a heavy chain molecule that extends, e.g., from about residue 244
to residue 360 of an antibody using conventional numbering schemes
(residues 244 to 360, Kabat numbering system; and residues 231-340,
EU numbering system; see Kabat E A et al.). The CH2 domain is
unique in that it is not closely paired with another domain.
Rather, two N-linked branched carbohydrate chains are interposed
between the two CH2 domains of an intact native IgG molecule. It is
also well documented that the CH3 domain extends from the CH2
domain to the C-terminal of the IgG molecule and comprises
approximately 108 residues.
[0108] As used herein, the term "hinge region" includes the portion
of a heavy chain molecule that joins the CH1 domain to the CH2
domain. This hinge region comprises approximately 25 residues and
is flexible, thus allowing the two N-terminal antigen binding
regions to move independently. Hinge regions can be subdivided into
three distinct domains: upper, middle, and lower hinge domains
(Roux et al., J. Immunol. 161:4083 (1998)).
[0109] As used herein the term "disulfide bond" includes the
covalent bond formed between two sulfur atoms. The amino acid
cysteine comprises a thiol group that can form a disulfide bond or
bridge with a second thiol group. In most naturally occurring IgG
molecules, the CH1 and CL regions are linked by a disulfide bond
and the two heavy chains are linked by two disulfide bonds at
positions corresponding to 239 and 242 using the Kabat numbering
system (position 226 or 229, EU numbering system).
[0110] As used herein, the term "chimeric antibody" will be held to
mean any antibody wherein the immunoreactive region or site is
obtained or derived from a first species and the constant region
(which may be intact, partial or modified in accordance with the
instant invention) is obtained from a second species. In certain
embodiments the target binding region or site will be from a
non-human source (e.g., mouse or primate) and the constant region
is human (for example, monoclonal antibody (MAb) 1476 described
herein).
[0111] As used herein, the term "engineered antibody" refers to an
antibody in which the variable domain in either the heavy or light
chain or both is altered by at least partial replacement of one or
more CDRs from an antibody of known specificity and, if necessary,
by partial framework region replacement and sequence changing.
Although the CDRs may be derived from an antibody of the same class
or even subclass as the antibody from which the framework regions
are derived, it is envisaged that the CDRs will be derived from an
antibody of different class and preferably from an antibody from a
different species. An engineered antibody in which one or more
"donor" CDRs from a non-human antibody of known specificity is
grafted into a human heavy or light chain framework region is
referred to herein as a "humanized antibody." It may not be
necessary to replace all of the CDRs with the complete CDRs from
the donor variable domain to transfer the antigen binding capacity
of one variable domain to another. Rather, it may only be necessary
to transfer those residues that are necessary to maintain the
activity of the target binding site. In certain embodiments, the
humanized antibody comprises 1, 2, or 3 CDRs from a donor variable
heavy domain. In another embodiment, the humanized antibody
comprises 1, 2, or 3 CDRs from a donor variable light domain.
[0112] It is further recognized that the framework regions within
the variable domain in a heavy or light chain, or both, of a
humanized antibody may comprise solely residues of human origin, in
which case these framework regions of the humanized antibody (for
example, MAb 5080 or 5261) are referred to as "fully human
framework regions." Alternatively, one or more residues of the
framework region(s) of the donor variable domain can be engineered
within the corresponding position of the human framework region(s)
of a variable domain in a heavy or light chain, or both, of a
humanized antibody if necessary to maintain proper binding or to
enhance binding to the CXCL13 antigen. A human framework region
that has been engineered in this manner would thus comprise a
mixture of human and donor framework residues, and is referred to
herein as a "partially human framework region."
[0113] For example, humanization of an anti-CXCL13 antibody can be
essentially performed following the method of Winter and co-workers
(Jones et al., Nature 321:522-525 (1986); Riechmann et al., Nature
332:323-327 (1988); Verhoeyen et al., Science 239:1534-1536
(1988)), by substituting rodent or mutant rodent CDRs or CDR
sequences for the corresponding sequences of a human anti-CXCL13
antibody. See also U.S. Pat. Nos. 5,225,539; 5,585,089; 5,693,761;
5,693,762; and 5,859,205; herein incorporated by reference. The
resulting humanized anti-CXCL13 antibody would comprise at least
one rodent or mutant rodent CDR within the fully human framework
regions of the variable domain of the heavy and/or light chain of
the humanized antibody. In some instances, residues within the
framework regions of one or more variable domains of the humanized
anti-CXCL13 antibody are replaced by corresponding non-human (for
example, rodent) residues (see, for example, U.S. Pat. Nos.
5,585,089; 5,693,761; 5,693,762; and 6,180,370), in which case the
resulting humanized anti-CXCL13 antibody would comprise partially
human framework regions within the variable domain of the heavy
and/or light chain.
[0114] Furthermore, humanized antibodies may comprise residues that
are not found in the recipient antibody or in the donor antibody.
These modifications are made to further refine antibody performance
(e.g., to obtain desired affinity). In general, the humanized
antibody will comprise substantially all of at least one, and
typically two, variable domains, in which all or substantially all
of the CDRs correspond to those of a non-human immunoglobulin and
all or substantially all of the framework regions are those of a
human immunoglobulin sequence. The humanized antibody optionally
also will comprise at least a portion of an immunoglobulin constant
region (Fc), typically that of a human immunoglobulin. For further
details see Jones et al., Nature 331:522-525 (1986); Riechmann et
al., Nature 332:323-329 (1988); and Presta, Curr. Op. Struct. Biol.
2:593-596 (1992); herein incorporated by reference. Accordingly,
such "humanized" antibodies may include antibodies wherein
substantially less than an intact human variable domain has been
substituted by the corresponding sequence from a non-human species.
In practice, humanized antibodies are typically human antibodies in
which some or all CDR residues and possibly some framework residues
are substituted by residues from analogous sites in rodent
antibodies. See, for example, U.S. Pat. Nos. 5,225,539; 5,585,089;
5,693,761; 5,693,762; and 5,859,205. See also U.S. Pat. No.
6,180,370, and International Publication No. WO 01/27160, where
humanized antibodies and techniques for producing humanized
antibodies having improved affinity for a predetermined antigen are
disclosed.
[0115] As used herein, the terms "linked," "fused," or "fusion" are
used interchangeably. These terms refer to the joining together of
two more elements or components, by whatever means including
chemical conjugation or recombinant means. An "in-frame fusion"
refers to the joining of two or more polynucleotide open reading
frames (ORFs) to form a continuous longer ORF, in a manner that
maintains the correct translational reading frame of the original
ORFs. Thus, a recombinant fusion protein is a single protein
containing two or more segments that correspond to polypeptides
encoded by the original ORFs (which segments are not normally so
joined in nature). Although the reading frame is thus made
continuous throughout the fused segments, the segments may be
physically or spatially separated by, for example, in-frame linker
sequence. For example, polynucleotides encoding the CDRs of an
immunoglobulin variable region may be fused, in-frame, but be
separated by a polynucleotide encoding at least one immunoglobulin
framework region or additional CDR regions, as long as the "fused"
CDRs are co-translated as part of a continuous polypeptide.
[0116] In the context of polypeptides, a "linear sequence" or a
"sequence" is an order of amino acids in a polypeptide in an amino
to carboxyl terminal direction in which residues that neighbor each
other in the sequence are contiguous in the primary structure of
the polypeptide.
[0117] The term "expression" as used herein refers to a process by
which a gene produces a biochemical, for example, a polypeptide.
The process includes any manifestation of the functional presence
of the gene within the cell including, without limitation, gene
knockdown as well as both transient expression and stable
expression. It includes without limitation transcription of the
gene into messenger RNA (mRNA), and the translation of such mRNA
into polypeptide(s). If the final desired product is a biochemical,
expression includes the creation of that biochemical and any
precursors. Expression of a gene produces a "gene product." As used
herein, a gene product can be either a nucleic acid, e.g., a
messenger RNA produced by transcription of a gene, or a polypeptide
which is translated from a transcript. Gene products described
herein further include nucleic acids with post transcriptional
modifications, e.g., polyadenylation, or polypeptides with post
translational modifications, e.g., methylation, glycosylation, the
addition of lipids, association with other protein subunits,
proteolytic cleavage, and the like.
[0118] As used herein, the terms "treat" or "treatment" refer to
both therapeutic treatment and prophylactic or preventative
measures, wherein the object is to prevent or slow down (lessen) an
undesired physiological change or disorder, such as the progression
of multiple sclerosis, lupus, arthritis, or cancer. Beneficial or
desired clinical results include, but are not limited to,
alleviation of symptoms, diminishment of extent of disease,
stabilized (i.e., not worsening) state of disease, delay or slowing
of disease progression, amelioration or palliation of the disease
state, and remission (whether partial or total), whether detectable
or undetectable. "Treatment" can also mean prolonging survival as
compared to expected survival if not receiving treatment. Those in
need of treatment include those already with the condition or
disorder as well as those prone to have the condition or disorder
or those in which the condition or disorder is to be prevented.
[0119] By "subject" or "individual" or "animal" or "patient" or
"mammal," is meant any subject, particularly a mammalian subject,
for whom diagnosis, prognosis, or therapy is desired. Mammalian
subjects include humans, domestic animals, farm animals, and zoo,
sports, or pet animals such as dogs, cats, guinea pigs, rabbits,
rats, mice, horses, cows, and so on.
[0120] As used herein, phrases such as "a subject that would
benefit from administration of an anti-CXCL13 antibody" and "an
animal in need of treatment" includes subjects, such as mammalian
subjects, that would benefit from administration of an anti-CXCL13
antibody used, e.g., for detection of an anti-CXCL13 polypeptide
(e.g., for a diagnostic procedure) and/or from treatment, i.e.,
palliation or prevention of a disease, with an anti-CXCL13
antibody. As described in more detail herein, an anti-CXCL13
antibody can be used in unconjugated form or can be conjugated,
e.g., to a drug, prodrug, or an isotope.
II. Target Polypeptide Description
[0121] As used herein, the terms "CXCL13" and "CXCL13 polypeptide"
are used interchangably. In certain embodiments, CXCL13 may include
a full-sized CXCL13 or a fragment thereof, or a CXCL13 variant
polypeptide, wherein the fragment of CXCL13 or CXCL13 variant
polypeptide retains some or all functional properties of the
full-sized CXCL13. The human CXCL13 polypeptide and polynucleotide
sequences (SEQ ID NOs: 19 and 20, respectively) have been
described, see, e.g., Legler, et. al., J. Exp. Med. 187(4):655-660
(i 998). The mouse CXCL13 polypeptide and polynucleotide sequences
(SEQ ID NOs: 21 and 22, respectively) have been described, see,
e.g., Gunn, et. al., Nature 391(6669):799-803 (1998). Furthermore,
the cynomolgus monkey CXCL13 polypeptide sequence has been
described as shown in SEQ ID NO: 23.
III. Anti-CXCL13 Antibodies
[0122] Commercial antibodies that bind CXCL13 have been disclosed
in the art, e.g., rat anti-mouse MAb 470 (R & D Systems) and
mouse anti-human MAb 801 (R & D Systems). In addition, murine
anti-CXCL13 antibodies are disclosed in U.S. Patent Application
Publication No. 2008 0227704 A1.
[0123] The antibodies of the invention comprise anti-CXCL13
antibodies or antigen-binding fragments, variants, or derivatives
thereof that bind to CXCL13, e.g., MAb 5261, MAb 5378, MAb 5080,
MAb 1476, 3D2, or 3C9. In certain embodiments the anti-CXCL13
antibodies bind human, primate, murine, or both human and murine
CXCL13. In certain embodiments, the anti-CXCL13 antibodies of the
invention are humanized. In other embodiments, the anti-CXCL13
antibodies block CXCL13 binding to its receptor, e.g., CXCR5. In
certain embodiments, the anti-CXCL13 antibodies of the invention
are MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2, 3C9, or
antigen-binding fragments, variants, or derivatives thereof.
[0124] In one embodiment, the present invention provides an
isolated binding molecule, e.g., an antibody or antigen binding
fragments, variants, and derivatives thereof, which specifically
binds to the same CXCL13 epitope as a reference antibody, e.g., MAb
5261, MAb 5378, MAb 5080, MAb 1476, 3D2, or 3C9. In another
embodiment, the present invention provides an isolated binding
molecule, e.g., an antibody or antigen binding fragment thereof,
which specifically binds to CXCL13, and competitively inhibits a
reference antibody, e.g., MAb 5261, MAb 5378, MAb 5080, MAb 1476,
3D2, or 3C9, from specifically binding to CXCL13, e.g., human,
primate, murine, or both human and murine CXCL13.
[0125] In certain embodiments, the binding molecule of the
invention has an amino acid sequence that has at least about 80%,
about 85%, about 88%, about 89%, about 90%, about 91%, about 92%,
about 93%, about 94%, or about 95% sequence identity of an amino
acid sequence for the reference anti-CXCL13 antibody molecule. In a
further embodiment, the binding molecule shares at least about 96%,
about 97%, about 98%, about 99%, or 100% sequence identity to a
reference antibody. In certain embodiments, the reference antibody
is MAb 5261, MAb 5378, MAb 5080, MAb 1476, 3D2, or 3C9.
[0126] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin heavy
chain variable domain (VH domain), where at least one of the CDRs
of the VH domain has an amino acid sequence that is at least about
80%, about 85%, about 90%, about 95%, about 96%, about 97%, about
98%, about 99%, or identical to CDR1, CDR2 or CDR3 of SEQ ID NO: 3
or 13.
[0127] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of or consisting of an immunoglobulin heavy
chain variable domain (VH domain), where at least one of the CDRs
of the VH domain has an amino acid sequence that is at least about
80%, about 85%, about 90%, about 95%, about 96%, about 97%, about
98%, about 99%, or identical to SEQ ID NO: 4, 5, or 6.
[0128] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin heavy
chain variable domain (VH domain), where the VH domain has an amino
acid sequence that is at least about 80%, about 85%, about 90%,
about 95%, about 96%, about 97%, about 98%, about 99%, or identical
to SEQ ID NO: 3 or 13.
[0129] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin heavy
chain variable domain (VH domain), where at least one of the CDRs
of the VH domain has an amino acid sequence identical, except for
1, 2, 3, 4, or 5 conservative amino acid substitutions, to CDR1,
CDR2 or CDR3 of SEQ ID NO: 3 or 13.
[0130] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin heavy
chain variable domain (VH domain), where at least one of the CDRs
of the VH domain has an amino acid sequence identical, except for
1, 2, 3, 4, or 5 conservative amino acid substitutions, to SEQ ID
NO: 4, 5, or 6.
[0131] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of a VH domain that has an
amino acid sequence that is at least about 80%, about 85%, about
90%, about 91%, about 92%, about 93%, about 94%, about 95%, about
96%, about 97%, about 98%, about 99%, or 100% identical to SEQ ID
NO: 3 or 13, wherein an anti-CXCL 13 antibody comprising the
encoded VH domain specifically or preferentially binds to
CXCL13.
[0132] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin light
chain variable domain (VL domain), where at least one of the CDRs
of the VL domain has an amino acid sequence that is at least about
80%, about 85%, about 90%, about 95%, about 96%, about 97%, about
98%, about 99%, or identical to CDR1, CDR2 or CDR3 of SEQ ID NO: 8,
15, or 17.
[0133] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin light
chain variable domain (VL domain), where at least one of the CDRs
of the VL domain has an amino acid sequence that is at least about
80%, about 85%, about 90%, about 95%, about 96%, about 97%, about
98%, about 99%, or identical to SEQ ID NO: 9, 16, 10, or 11.
[0134] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin light
chain variable domain (VL domain), where the VL domain has an amino
acid sequence that is at least about 80%, about 85%, about 90%,
about 95%, about 96%, about 97%, about 98%, about 99%, or identical
to SEQ ID NO: 8, 15, or 17.
[0135] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin light
chain variable domain (VL domain), where at least one of the CDRs
of the VL domain has an amino acid sequence identical, except for
t, 2, 3, 4, or 5 conservative amino acid substitutions, to CDR1,
CDR2 or CDR3 of SEQ ID NO: 8, 15, or 17.
[0136] In another embodiment, the present invention provides an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of an immunoglobulin light
chain variable domain (VL domain), where at least one of the CDRs
of the VL domain has an amino acid sequence identical, except for
1, 2, 3, 4, or 5 conservative amino acid substitutions, to SEQ ID
NO: 9, 16, 10, or 11.
[0137] In a further embodiment, the present invention includes an
isolated antibody or antigen-binding fragment thereof comprising,
consisting essentially of, or consisting of a VL domain that has an
amino acid sequence that is at least about 80%, about 85%, about
90%, about 91%, about 92%, about 93%, about 94%, about 95%, about
96%, about 97%, about 98%, about 99%, or 100% identical to SEQ ID
NO: 8, 15, or 17, wherein an anti-CXCL13 antibody comprising the
encoded VL domain specifically or preferentially binds to
CXCL13.
[0138] Suitable biologically active variants of the anti-CXCL13
antibodies of the invention can be used in the methods of the
present invention. Such variants will retain the desired binding
properties of the parent anti-CXCL13 antibody. Methods for making
antibody variants are generally available in the art.
[0139] Methods for mutagenesis and nucleotide sequence alterations
are well known in the art. See, for example, Walker and Gaastra,
eds. (1983) Techniques in Molecular Biology (MacMillan Publishing
Company, New York); Kunkel, Proc. Natl. Acad. Sci. USA 82:488-492
(1985); Kunkel et al., Methods Enzymol. 154:367-382 (1987);
Sambrook et al. (1989) Molecular Cloning: A Laboratory Manual (Cold
Spring Harbor, N.Y.); U.S. Pat. No. 4,873,192; and the references
cited therein; herein incorporated by reference. Guidance as to
appropriate amino acid substitutions that do not affect biological
activity of the polypeptide of interest may be found in the model
of Dayhoff et al. (1978) in Atlas of Protein Sequence and Structure
(Natl. Biomed. Res. Found., Washington, D.C.), pp. 345-352, herein
incorporated by reference in its entirety. The model of Dayhoff et
al. uses the Point Accepted Mutation (PAM) amino acid similarity
matrix (PAM 250 matrix) to determine suitable conservative amino
acid substitutions. Conservative substitutions, such as exchanging
one amino acid with another having similar properties, may be
preferred. Examples of conservative amino acid substitutions as
taught by the PAM 250 matrix of the Dayhoff et al. model include,
but are not limited to, GlyAla, ValIleLeu, AspGlu, LysArg, AsnGln,
and PheTrpTyr.
[0140] In constructing variants of the anti-CXCL13 binding
molecule, e.g., an antibody or antigen-binding fragment thereof,
polypeptides of interest, modifications are made such that variants
continue to possess the desired properties, e.g., being capable of
specifically binding to a CXCL13, e.g., human, primate, murine, or
both human and murine CXCL13. Obviously, any mutations made in the
DNA encoding the variant polypeptide must not place the sequence
out of reading frame and preferably will not create complementary
regions that could produce secondary mRNA structure. See, e.g., EP
Pat. No. EP0075444 B1.
[0141] Methods for measuring anti-CXCL13 binding molecule, e.g., an
antibody or antigen-binding fragment thereof, binding specificity
include, but are not limited to, standard competitive binding
assays, assays for monitoring immunoglobulin secretion by T cells
or B cells, T cell proliferation assays, apoptosis assays, ELISA
assays, and the like. See, for example, such assays disclosed in WO
93/14125; Shi et al., Immunity 13:633-642 (2000); Kumanogoh et al.,
J Immunol 169:1175-1181 (2002); Watanabe et al., J Immunol
167:4321-4328 (2001); Wang et al., Blood 97:3498-3504 (2001); and
Giraudon et al., J Immunol 172(2):1246-1255 (2004), all of which
are herein incorporated by reference.
[0142] When discussed herein whether any particular polypeptide,
including the constant regions, CDRs, VH domains, or VL domains
disclosed herein, is at least about 65%, about 70%, about 75%,
about 80%, about 85%, about 90%, about 91%, about 92%, about 93%,
about 94%, about 95%, about 96%, about 97%, about 98%, about 99%,
or even about 100% identical to another polypeptide, the % identity
can be determined using methods and computer programs/software
known in the art such as, but not limited to, the BESTFIT program
(Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics
Computer Group, University Research Park, 575 Science Drive,
Madison, Wis. 53711). BESTFIT uses the local homology algorithm of
Smith and Waterman (1981) Adv. Appl. Math. 2:482-489, to find the
best segment of homology between two sequences. When using BESTFIT
or any other sequence alignment program to determine whether a
particular sequence is, for example, 95% identical to a reference
sequence according to the present invention, the parameters are
set, of course, such that the percentage of identity is calculated
over the full length of the reference polypeptide sequence and that
gaps in homology of up to 5% of the total number of amino acids in
the reference sequence are allowed.
[0143] For purposes of the present invention, percent sequence
identity may be determined using the Smith-Waterman homology search
algorithm using an affine gap search with a gap open penalty of 12
and a gap extension penalty of 2, BLOSUM matrix of 62. The
Smith-Waterman homology search algorithm is taught in Smith and
Waterman (1981) Adv. Appl. Math. 2:482-489. A variant may, for
example, differ from a reference anti-CXCL13 antibody (e.g., MAb
5261, MAb 5378, MAb 5080, MAb 1476, 3D2, or 3C9) by as few as 1 to
15 amino acid residues, as few as 1 to 10 amino acid residues, such
as 6-10, as few as 5, as few as 4, 3, 2, or even 1 amino acid
residue.
[0144] The precise chemical structure of a polypeptide capable of
specifically binding CXCL13 and retaining the desired CXCL13
blocking activity depends on a number of factors. As ionizable
amino and carboxyl groups are present in the molecule, a particular
polypeptide may be obtained as an acidic or basic salt, or in
neutral form. All such preparations that retain their biological
activity when placed in suitable environmental conditions are
included in the definition of anti-CXCL 13 antibodies as used
herein. Further, the primary amino acid sequence of the polypeptide
may be augmented by derivatization using sugar moieties
(glycosylation) or by other supplementary molecules such as lipids,
phosphate, acetyl groups and the like. It may also be augmented by
conjugation with saccharides. Certain aspects of such augmentation
are accomplished through post-translational processing systems of
the producing host; other such modifications may be introduced in
vitro. In any event, such modifications are included in the
definition of an anti-CXCL13 antibody used herein so long as the
desired properties of the anti-CXCL13 antibody are not destroyed.
It is expected that such modifications may quantitatively or
qualitatively affect the activity, either by enhancing or
diminishing the activity of the polypeptide, in the various assays.
Further, individual amino acid residues in the chain may be
modified by oxidation, reduction, or other derivatization, and the
polypeptide may be cleaved to obtain fragments that retain
activity. Such alterations that do not destroy the desired
properties (e.g., binding specificity for CXCL13, binding affinity,
and/or CXCL 13 blocking activity) do not remove the polypeptide
sequence from the definition of anti-CXCL13 antibodies of interest
as used herein.
[0145] The art provides substantial guidance regarding the
preparation and use of polypeptide variants. In preparing the
anti-CXCL13 binding molecule, e.g., an antibody or antigen-binding
fragment thereof, variants, one of skill in the art can readily
determine which modifications to the native protein's nucleotide or
amino acid sequence will result in a variant that is suitable for
use as a therapeutically active component of a pharmaceutical
composition used in the methods of the present invention.
[0146] The constant region of an anti-CXCL13 antibody may be
mutated to alter effector function in a number of ways. For
example, see U.S. Pat. No. 6,737,056B1 and U.S. Patent Application
Publication No. 2004/0132101A1, which disclose Fc mutations that
optimize antibody binding to Fc receptors.
[0147] In certain anti-CXCL13 antibodies, the Fc portion may be
mutated to decrease effector function using techniques known in the
art. For example, the deletion or inactivation (through point
mutations or other means) of a constant region domain may reduce Fc
receptor binding of the circulating modified antibody thereby
increasing tumor localization. In other cases it may be that
constant region modifications consistent with the instant invention
moderate complement binding and thus reduce the serum half life and
nonspecific association of a conjugated cytotoxin. Yet other
modifications of the constant region may be used to modify
disulfide linkages or oligosaccharide moieties that allow for
enhanced localization due to increased antigen specificity or
antibody flexibility. The resulting physiological profile,
bioavailability and other biochemical effects of the modifications,
such as tumor localization, biodistribution and serum half-life,
may easily be measured and quantified using well known
immunological techniques without undue experimentation.
[0148] Anti-CXCL13 antibodies of the invention also include
derivatives that are modified, e.g., by the covalent attachment of
any type of molecule to the antibody such that covalent attachment
does not prevent the antibody from specifically binding to its
cognate epitope. For example, but not by way of limitation, the
antibody derivatives include antibodies that have been modified,
e.g., by glycosylation, acetylation, pegylation, phosphorylation,
amidation, derivatization by known protecting/blocking groups,
proteolytic cleavage, linkage to a cellular ligand or other
protein, etc. Any of numerous chemical modifications may be carried
out by known techniques, including, but not limited to specific
chemical cleavage, acetylation, formylation, etc. Additionally, the
derivative may contain one or more non-classical amino acids.
[0149] A "conservative amino acid substitution" is one in which the
amino acid residue is replaced with an amino acid residue having a
side chain with a similar charge. Families of amino acid residues
having side chains with similar charges have been defined in the
art. These families include amino acids with basic side chains
(e.g., lysine, arginine, histidine), acidic side chains (e.g.,
aspartic acid, glutamic acid), uncharged polar side chains (e.g.,
glycine, asparagine, glutamine, serine, threonine, tyrosine,
cysteine), nonpolar side chains (e.g., alanine, valine, leucine,
isoleucine, proline, phenylalanine, methionine, tryptophan),
beta-branched side chains (e.g., threonine, valine, isoleucine) and
aromatic side chains (e.g., tyrosine, phenylalanine, tryptophan,
histidine). Alternatively, mutations can be introduced randomly
along all or part of the coding sequence, such as by saturation
mutagenesis, and the resultant mutants can be screened for
biological activity to identify mutants that retain activity (e.g.,
binding specificity for CXCL13, binding affinity, and/or CXCL13
blocking activity).
[0150] For example, it is possible to introduce mutations only in
framework regions or only in CDR regions of an antibody molecule.
Introduced mutations may be silent or neutral missense mutations,
i.e., have no, or little, effect on an antibody's ability to bind
antigen. These types of mutations may be useful to optimize codon
usage, or improve a hybridoma's antibody production. Alternatively,
non-neutral missense mutations may alter an antibody's ability to
bind antigen. The location of most silent and neutral missense
mutations is likely to be in the framework regions, while the
location of most non-neutral missense mutations is likely to be in
CDR, though this is not an absolute requirement. One of skill in
the art would be able to design and test mutant molecules with
desired properties such as no alteration in antigen binding
activity or alteration in binding activity (e.g., improvements in
antigen binding activity or change in antibody specificity).
Following mutagenesis, the encoded protein may routinely be
expressed and the functional and/or biological activity of the
encoded protein, (e.g., ability to immunospecifically bind at least
one epitope of a CXCL13 polypeptide) can be determined using
techniques described herein or by routinely modifying techniques
known in the art.
[0151] In certain embodiments, the anti-CXCL13 antibodies of the
invention comprise at least one optimized
complementarity-determining region (CDR). By "optimized CDR" is
intended that the CDR has been modified and optimized sequences
selected based on the sustained or improved binding affinity and/or
anti-CXCL 13 activity that is imparted to an anti-CXCL13 antibody
comprising the optimized CDR. "Anti-CXCL13 activity" or "CXCL13
blocking activity" can include activity which modulates one or more
of the following activities associated with CXCL13: blockade of
CXCL13 interaction with its receptor resulting in interference with
B cell and follicular B-helper T cell migration into inflamed
tissues and germinal center formation (e.g., in the case of
autoimmune diseases); inhibition of cancer cell proliferation and
ability to spread in oncological disorders; or any other activity
association with CXCL13-expressing cells. Anti-CXCL13 activity can
also be attributed to a decrease in incidence or severity of
diseases associated with CXCL13 expression, including, but not
limited to, certain types of autoimmune diseases (e.g., Multiple
sclerosis, arthritis (e.g., Rheumatoid arthritis), chronic
gastritis, gastric lymphomas, transplant rejection, Sjogren
syndrome (SS), Systemic Lupus Erythematosis (SLE), active mixed
cryoglobulinemia (MC) vasculitis in Hepatitis C virus infection,
Juvenile dermatomyositis, and Myastenia Gravis) and certain cancers
(e.g., Burkitt's lymphoma, Non-Hodgkin Lymphoma, MALT lymphoma
(e.g., gastric MALT lymphoma), Carcinoma (e.g., colon, prostate,
breast, stomach, esophageal, and pancreatic), and Chronic
lymphocytic leukemia (CLL)) as well as other inflammatory diseases
such as Helicobacter infection induced inflammatory diseases, e.g.,
gastritis, ulcers, and gastric mucosal lesions.
IV. Polynucleotides Encoding Anti-CXCL13 Antibodies
[0152] The present invention also provides for nucleic acid
molecules encoding anti-CXCL13 antibodies of the invention, or
antigen-binding fragments, variants, or derivatives thereof.
[0153] In one embodiment, the present invention provides an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding an immunoglobulin heavy chain
variable domain (VH domain), where at least one of the CDRs of the
VH domain has an amino acid sequence that is at least about 80%,
about 85%, about 90%, about 95%, about 96%, about 97%, about 98%,
about 99%, or identical to a polynucleotide sequence selected from
CDR1, CDR2 or CDR3 of SEQ ID NO: 2 or 12.
[0154] In other embodiments, the present invention provides an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding an immunoglobulin VH domain,
where at least one of the CDRs of the VH domain is selected from
the group consisting of: (a) a CDR1 comprising the amino acid
sequence set forth in SEQ ID NO: 4; (b) a CDR2 comprising the amino
acid sequence set forth in SEQ ID NO: 5; and (c) a CDR3 comprising
the amino acid sequence set forth in SEQ ID NO: 6.
[0155] In a further embodiment, the present invention includes an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding a VH domain that has an amino
acid sequence that is at least about 80%, about 85%, about 90%,
about 91%, about 92%, about 93%, about 94%, about 95%, about 96%,
about 97%, about 98%, about 99%, or 100% identical to a reference
VH domain polypeptide sequence comprising SEQ ID NO: 3 or SEQ ID
NO: 13, wherein an anti-CXCL13 antibody comprising the encoded VH
domain specifically or preferentially binds to CXCL13.
[0156] In a further embodiment, the present invention includes an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding a VH domain, wherein the
polynucleotide sequence is at least about 80%, about 85%, about
90%, about 91%, about 92%, about 93%, about 94%, about 95%, about
96%, about 97%, about 98%, about 99%, or 100% identical to a
sequence comprising SEQ ID NO: 2 or SEQ ID NO: 12, wherein an
anti-CXCL13 antibody comprising the encoded VH domain specifically
or preferentially binds to CXCL13.
[0157] In one embodiment, the present invention provides an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding an immunoglobulin light chain
variable domain (VL domain), where at least one of the CDRs of the
VL domain has an amino acid sequence that is at least about 80%,
about 85%, about 90%, about 95%, about 96%, about 97%, about 98%,
about 99%, or identical to a polynucleotide sequence of CDR1, CDR2
or CDR3 of SEQ ID NO: 8, SEQ ID NO: 15, or SEQ ID NO: 17.
[0158] In other embodiments, the present invention provides an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding an immunoglobulin VL domain,
where at least one of the CDRs of the VL domain is selected from
the group consisting of: (a) a CDR1 comprising the amino acid
sequence set forth in SEQ ID NO: 9 or 16; (b) a CDR2 comprising the
amino acid sequence set forth in SEQ ID NO: 10; and (c) a CDR3
comprising the amino acid sequence set forth in SEQ ID NO: 11.
[0159] In a further embodiment, the present invention includes an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding a VL domain that has an amino
acid sequence that is at least about 80%, about 85%, about 90%,
about 91%, about 92%, about 93%, about 94%, about 95%, about 96%,
about 97%, about 98%, about 99%, or 100% identical to a reference
VL domain polypeptide sequence comprising SEQ ID NO: 8, 15, or 17,
wherein an anti-CXCL13 antibody comprising the encoded VL domain
specifically or preferentially binds to CXCL13.
[0160] In a further embodiment, the present invention includes an
isolated polynucleotide comprising, consisting essentially of, or
consisting of a nucleic acid encoding a VL domain, wherein the
polynucleotide sequence is at least about 80%, about 85%, about
90%, about 91%, about 92%, about 93%, about 94%, about 95%, about
96%, about 97%, about 98%, about 99%, or 100% identical to a
sequence comprising SEQ ID NO: 7, SEQ ID NO: 14, or SEQ ID NO: 18,
wherein an anti-CXCL13 antibody comprising the encoded VL domain
specifically or preferentially binds to CXCL13.
[0161] Any of the polynucleotides described above may further
include additional nucleic acids, encoding, e.g., a signal peptide
to direct secretion of the encoded polypeptide, antibody constant
regions as described herein, or other heterologous polypeptides as
described herein. Also, as descried in more detail elsewhere
herein, the present invention includes compositions comprising one
or more of the polynucleotides described above.
[0162] In one embodiment, the invention includes compositions
comprising a first polynucleotide and second polynucleotide wherein
said first polynucleotide encodes a VH domain as described herein
and wherein said second polynucleotide encodes a VL domain as
described herein. Specifically a composition which comprises,
consists essentially of, or consists of a VH domain-encoding
polynucleotide, as set forth in SEQ ID NO: 2 or 12, and a VL
domain-encoding polynucleotide, for example, a polynucleotide
encoding the VL domain as set forth in SEQ ID NO: 7, 14, or 18.
[0163] The present invention also includes fragments of the
polynucleotides of the invention, as described elsewhere.
Additionally polynucleotides that encode fusion polypolypeptides,
Fab fragments, and other derivatives, as described herein, are also
contemplated by the invention.
[0164] The polynucleotides may be produced or manufactured by any
method known in the art. For example, if the nucleotide sequence of
the antibody is known, a polynucleotide encoding the antibody may
be assembled from chemically synthesized oligonucleotides (e.g., as
described in Kutmeier et al., Bio Techniques 17:242 (1994)), which,
briefly, involves the synthesis of overlapping oligonucleotides
containing portions of the sequence encoding the antibody,
annealing and ligating of those oligonucleotides, and then
amplification of the ligated oligonucleotides by PCR.
[0165] Alternatively, a polynucleotide encoding an anti-CXCL13
antibody, or antigen-binding fragment, variant, or derivative
thereof of the invention, may be generated from nucleic acid from a
suitable source. If a clone containing a nucleic acid encoding a
particular antibody is not available, but the sequence of the
antibody molecule is known, a nucleic acid encoding the antibody
may be chemically synthesized or obtained from a suitable source
(e.g., an antibody cDNA library, or a cDNA library generated from,
or nucleic acid, preferably poly A+RNA, isolated from, any tissue
or cells expressing the antibody or other anti-CXCL13 antibody,
such as hybridoma cells selected to express an antibody) by PCR
amplification using synthetic primers hybridizable to the 3' and 5'
ends of the sequence or by cloning using an oligonucleotide probe
specific for the particular gene sequence to identify, e.g., a cDNA
clone from a cDNA library that encodes the antibody or other
anti-CXCL13 antibody. Amplified nucleic acids generated by PCR may
then be cloned into replicable cloning vectors using any method
well known in the art.
[0166] Once the nucleotide sequence and corresponding amino acid
sequence of the anti-CXCL13 antibody, or antigen-binding fragment,
variant, or derivative thereof is determined, its nucleotide
sequence may be manipulated using methods well known in the art for
the manipulation of nucleotide sequences, e.g., recombinant DNA
techniques, site directed mutagenesis, PCR, etc. (see, for example,
the techniques described in Sambrook et al. (1990) Molecular
Cloning, A Laboratory Manual (2nd ed.; Cold Spring Harbor
Laboratory, Cold Spring Harbor, N.Y.) and Ausubel et al., eds.
(1998) Current Protocols in Molecular Biology (John Wiley &
Sons, NY), which are both incorporated by reference herein in their
entireties), to generate antibodies having a different amino acid
sequence, for example to create amino acid substitutions,
deletions, and/or insertions.
[0167] A polynucleotide encoding an anti-CXCL13 binding molecule,
e.g., an antibody, or antigen-binding fragment, variant, or
derivative thereof, can be composed of any polyribonucleotide or
polydeoxyribonucleotide, which may be unmodified RNA or DNA or
modified RNA or DNA. For example, a polynucleotide encoding
anti-CXCL13 antibody, or antigen-binding fragment, variant, or
derivative thereof can be composed of single- and double-stranded
DNA, DNA that is a mixture of single- and double-stranded regions,
single- and double-stranded RNA, and RNA that is mixture of single-
and double-stranded regions, hybrid molecules comprising DNA and
RNA that may be single-stranded or, more typically, double-stranded
or a mixture of single- and double-stranded regions. In addition, a
polynucleotide encoding an anti-CXCL13 binding molecule, e.g., an
antibody, or antigen-binding fragment, variant, or derivative
thereof can be composed of triple-stranded regions comprising RNA
or DNA or both RNA and DNA. A polynucleotide encoding an
anti-CXCL13 binding molecule, e.g., antibody, or antigen-binding
fragment, variant, or derivative thereof, may also contain one or
more modified bases or DNA or RNA backbones modified for stability
or for other reasons. "Modified" bases include, for example,
tritylated bases and unusual bases such as inosine. A variety of
modifications can be made to DNA and RNA; thus, "polynucleotide"
embraces chemically, enzymatically, or metabolically modified
forms.
[0168] An isolated polynucleotide encoding a non-natural variant of
a polypeptide derived from an immunoglobulin (e.g., an
immunoglobulin heavy chain portion or light chain portion) can be
created by introducing one or more nucleotide substitutions,
additions or deletions into the nucleotide sequence of the
immunoglobulin such that one or more amino acid substitutions,
additions or deletions are introduced into the encoded protein.
Mutations may be introduced by standard techniques, such as
site-directed mutagenesis and PCR-mediated mutagenesis. Preferably,
conservative amino acid substitutions are made at one or more
non-essential amino acid residues.
V. Fusion Proteins and Antibody Conjugates
[0169] As discussed in more detail elsewhere herein, anti-CXCL13
binding molecules, e.g., antibodies of the invention, or
antigen-binding fragments, variants, or derivatives thereof, may
further be recombinantly fused to a heterologous polypeptide at the
N- or C-terminus or chemically conjugated (including covalent and
non-covalent conjugations) to polypeptides or other compositions.
For example, anti-CXCL13 antibodies may be recombinantly fused or
conjugated to molecules useful as labels in detection assays and
effector molecules such as heterologous polypeptides, drugs,
radionuclides or toxins. See, e.g., PCT publications WO 92/08495;
WO 91/14438; WO 89/12624; U.S. Pat. No. 5,314,995; and EP
396,387.
[0170] Anti-CXCL13 antibodies of the invention, or antigen-binding
fragments, variants, or derivatives thereof, may include
derivatives that are modified, i.e., by the covalent attachment of
any type of molecule to the antibody such that covalent attachment
does not prevent the antibody binding anti-CXCL13. For example, but
not by way of limitation, the antibody derivatives include
antibodies that have been modified, e.g., by glycosylation,
acetylation, pegylation, phosphorylation, amidation, derivatization
by known protecting/blocking groups, proteolytic cleavage, linkage
to a cellular ligand or other protein, etc. Any of numerous
chemical modifications may be carried out by known techniques,
including, but not limited to specific chemical cleavage,
acetylation, formylation, etc. Additionally, the derivative may
contain one or more non-classical amino acids.
[0171] Anti-CXCL13 binding molecules, e.g., antibodies of the
invention, or antigen-binding fragments, variants, or derivatives
thereof, can be composed of amino acids joined to each other by
peptide bonds or modified peptide bonds, i.e., peptide isosteres,
and may contain amino acids other than the 20 gene-encoded amino
acids. For example, anti-CXCL13 antibodies may be modified by
natural processes, such as posttranslational processing, or by
chemical modification techniques that are well known in the art.
Such modifications are well described in basic texts and in more
detailed monographs, as well as in a voluminous research
literature. Modifications can occur anywhere in the anti-CXCL13
binding molecule, including the peptide backbone, the amino acid
side-chains and the amino or carboxyl termini, or on moieties such
as carbohydrates. It will be appreciated that the same type of
modification may be present in the same or varying degrees at
several sites in a given anti-CXCL13 binding molecule. Also, a
given anti-CXCL13 binding molecule may contain many types of
modifications. Anti-CXCL13 binding molecules may be branched, for
example, as a result of ubiquitination, and they may be cyclic,
with or without branching. Cyclic, branched, and branched cyclic
anti-CXCL13 binding molecule may result from posttranslation
natural processes or may be made by synthetic methods.
Modifications include acetylation, acylation, ADP-ribosylation,
amidation, covalent attachment of flavin, covalent attachment of a
heme moiety, covalent attachment of a nucleotide or nucleotide
derivative, covalent attachment of a lipid or lipid derivative,
covalent attachment of phosphotidylinositol, cross-linking,
cyclization, disulfide bond formation, demethylation, formation of
covalent cross-links, formation of cysteine, formation of
pyroglutamate, formylation, gamma-carboxylation, glycosylation, GPI
anchor formation, hydroxylation, iodination, methylation,
myristoylation, oxidation, pegylation, proteolytic processing,
phosphorylation, prenylation, racemization, selenoylation,
sulfation, transfer-RNA mediated addition of amino acids to
proteins such as arginylation, and ubiquitination. (See, for
instance, Proteins--Structure and Molecular Properties, T. E.
Creighton, W. H. Freeman and Company, NY; 2nd ed. (1993); Johnson,
ed. (1983) Posttranslational Covalent Modification of Proteins
(Academic Press, NY), pgs. 1-12; Seifter et al., Meth. Enzymol.
182:626-646 (1990); Rattan et al., Ann. NY Acad. Sci. 663:48-62
(1992)).
[0172] The present invention also provides for fusion proteins
comprising an anti-CXCL13 antibody, or antigen-binding fragment,
variant, or derivative thereof, and a heterologous polypeptide. The
heterologous polypeptide to which the antibody is fused may be
useful for function or is useful to target the anti-CXCL13
polypeptide expressing cells.
[0173] In one embodiment, a fusion protein of the invention
comprises, consists essentially of, or consists of, a polypeptide
having the amino acid sequence of any one or more of the VH domains
of an antibody of the invention or the amino acid sequence of any
one or more of the VL domains of an antibody of the invention or
fragments or variants thereof, and a heterologous polypeptide
sequence.
[0174] In another embodiment, a fusion protein for use in the
diagnostic and treatment methods disclosed herein comprises,
consists essentially of, or consists of a polypeptide having the
amino acid sequence of any one, two, three of the CDRs of the VH
domain of an anti-CXCL13 antibody, or fragments, variants, or
derivatives thereof, and/or the amino acid sequence of any one,
two, three of the CDRs of the VL domain an anti-CXCL13 antibody, or
fragments, variants, or derivatives thereof, and a heterologous
polypeptide sequence. In one embodiment, a fusion protein comprises
a polypeptide having the amino acid sequence of at least one VH
domain of an anti-CXCL13 antibody of the invention and the amino
acid sequence of at least one VL domain of an anti-CXCL13 antibody
of the invention or fragments, derivatives or variants thereof, and
a heterologous polypeptide sequence. Preferably, the VH and VL
domains of the fusion protein correspond to a single source
antibody (or scFv or Fab fragment) that specifically binds at least
one epitope of CXCL13. In yet another embodiment, a fusion protein
for use in the diagnostic and treatment methods disclosed herein
comprises a polypeptide having the amino acid sequence of any one,
two, three or more of the CDRs of the VH domain of an anti-CXCL13
antibody and the amino acid sequence of any one, two, three or more
of the CDRs of the VL domain of an anti-CXCL13 antibody, or
fragments or variants thereof, and a heterologous polypeptide
sequence. Preferably, two, three, four, five, six, or more of the
CDR(s) of the VH domain or VL domain correspond to single source
antibody (or scFv or Fab fragment) of the invention. Nucleic acid
molecules encoding these fusion proteins are also encompassed by
the invention.
[0175] Exemplary fusion proteins reported in the literature include
fusions of the T cell receptor (Gascoigne et al., Proc. Natl. Acad.
Sci. USA 84:2936-2940 (1987)); CD4 (Capon et al., Nature
337:525-531 (1989); Traunecker et al., Nature 339:68-70 (1989);
Zettmeissl et al., DNA Cell Biol. USA 9:347-353 (1990); and Byrn et
al., Nature 344:667-670 (1990)); L-selectin (homing receptor)
(Watson et al., J. Cell. Biol. 110:2221-2229 (1990); and Watson et
al., Nature 349:164-167 (1991)); CD44 (Aruffo et al., Cell
61:1303-1313 (1990)); CD28 and B7 (Linsley et al., J. Exp. Med.
173:721-730 (1991)); CTLA-4 (Lisley et al., J. Exp. Med.
174:561-569 (1991)); CD22 (Stamenkovic et al., Cell 66:1133-1144
(1991)); TNF receptor (Ashkenazi et al., Proc. Natl. Acad. Sci. USA
88:10535-10539 (1991); Lesslauer et al., Eur. J. Immunol.
27:2883-2886 (1991); and Peppel et al., J. Exp. Med. 174:1483-1489
(1991)); and IgE receptor a (Ridgway and Gorman, J. Cell. Biol.
Vol. 115, Abstract No. 1448 (1991)).
[0176] As discussed elsewhere herein, anti-CXCL13 binding
molecules, e.g., antibodies of the invention, or antigen-binding
fragments, variants, or derivatives thereof, may be fused to
heterologous polypeptides to increase the in vivo half life of the
polypeptides or for use in immunoassays using methods known in the
art. For example, in one embodiment, PEG can be conjugated to the
anti-CXCL13 antibodies of the invention to increase their half-life
in vivo. See Leong et al., Cytokine 16:106 (2001); Adv. in Drug
Deliv. Rev. 54:531 (2002); or Weir et al., Biochem. Soc.
Transactions 30:512 (2002).
[0177] Moreover, anti-CXCL13 binding molecules, e.g., antibodies of
the invention, or antigen-binding fragments, variants, or
derivatives thereof, can be fused to marker sequences, such as a
peptide to facilitate their purification or detection. In certain
embodiments, the marker amino acid sequence is a hexa-histidine
peptide, such as the tag provided in a pQE vector (QIAGEN, Inc.,
9259 Eton Avenue, Chatsworth, Calif., 91311), among others, many of
which are commercially available. As described in Gentz et al.,
Proc. Natl. Acad. Sci. USA 86:821-824 (1989), for instance,
hexa-histidine provides for convenient purification of the fusion
protein. Other peptide tags useful for purification include, but
are not limited to, the "HA" tag, which corresponds to an epitope
derived from the influenza hemagglutinin protein (Wilson et al.,
Cell 37:767 (1984)) and the "flag" tag.
[0178] Fusion proteins can be prepared using methods that are well
known in the art (see for example U.S. Pat. Nos. 5,116,964 and
5,225,538). The precise site at which the fusion is made may be
selected empirically to optimize the secretion or binding
characteristics of the fusion protein. DNA encoding the fusion
protein is then transfected into a host cell for expression.
[0179] Anti-CXCL13 binding molecules, e.g., antibodies of the
present invention, or antigen-binding fragments, variants, or
derivatives thereof, may be used in non-conjugated form or may be
conjugated to at least one of a variety of molecules, e.g., to
improve the therapeutic properties of the molecule, to facilitate
target detection, or for imaging or therapy of the patient.
Anti-CXCL13 binding molecules, e.g., antibodies of the invention,
or antigen-binding fragments, variants, or derivatives thereof, can
be labeled or conjugated either before or after purification, or
when purification is performed.
[0180] In particular, anti-CXCL13 antibodies of the invention, or
antigen-binding fragments, variants, or derivatives thereof, may be
conjugated to therapeutic agents, prodrugs, peptides, proteins,
enzymes, viruses, lipids, biological response modifiers,
pharmaceutical agents, or PEG.
[0181] Those skilled in the art will appreciate that conjugates may
also be assembled using a variety of techniques depending on the
selected agent to be conjugated. For example, conjugates with
biotin are prepared, e.g., by reacting a binding polypeptide with
an activated ester of biotin such as the biotin
N-hydroxysuccinimide ester. Similarly, conjugates with a
fluorescent marker may be prepared in the presence of a coupling
agent, e.g., those listed herein, or by reaction with an
isothiocyanate, preferably fluorescein-isothiocyanate. Conjugates
of the anti-CXCL13 antibodies of the invention, or antigen-binding
fragments, variants, or derivatives thereof, are prepared in an
analogous manner.
[0182] The present invention further encompasses anti-CXCL13
binding molecules, e.g., antibodies of the invention, or
antigen-binding fragments, variants, or derivatives thereof,
conjugated to a diagnostic or therapeutic agent. The anti-CXCL13
antibodies, including antigen-binding fragments, variants, and
derivatives thereof, can be used diagnostically to, for example,
monitor the development or progression of a disease as part of a
clinical testing procedure to, e.g., determine the efficacy of a
given treatment and/or prevention regimen. For example, detection
can be facilitated by coupling the anti-CXCL13 antibody, or
antigen-binding fragment, variant, or derivative thereof, to a
detectaLle substance. Examples of detectable substances include
various enzymes, prosthetic groups, fluorescent materials,
luminescent materials, bioluminescent materials, radioactive
materials, positron emitting metals using various positron emission
tomographies, and nonradioactive paramagnetic metal ions. See, for
example, U.S. Pat. No. 4,741,900 for metal ions which can be
conjugated to antibodies for use as diagnostics according to the
present invention. Examples of suitable enzymes include horseradish
peroxidase, alkaline phosphatase, .beta.-galactosidase, or
acetylcholinesterase; examples of suitable prosthetic group
complexes include streptavidin/biotin and avidin/biotin; examples
of suitable fluorescent materials include umbelliferone,
fluorescein, fluorescein isothiocyanate, rhodamine,
dichlorotriazinylamine fluorescein, dansyl chloride or
phycoerythrin; an example of a luminescent material includes
luminol; examples of bioluminescent materials include luciferase,
luciferin, and aequorin; and examples of suitable radioactive
material include .sup.125I, .sup.131I, .sup.111In, .sup.90Y, or
.sup.99Tc.
[0183] An anti-CXCL13 binding molecule, e.g., an antibody, or
antigen-binding fragment, variant, or derivative thereof, may be
conjugated to a therapeutic moiety such as a cytotoxin, a
therapeutic agent or a radioactive metal ion. A cytotoxin or
cytotoxic agent includes any agent that is detrimental to
cells.
[0184] An anti-CXCL13 binding molecule, e.g., an antibody, or
antigen-binding fragment, variant, or derivative thereof, also can
be detectably labeled by coupling it to a chemiluminescent
compound. The presence of the chemiluminescent-tagged anti-CXCL13
binding molecule is then determined by detecting the presence of
luminescence that arises during the course of a chemical reaction.
Examples of particularly useful chemiluminescent labeling compounds
are luminol, isoluminol, theromatic acridinium ester, imidazole,
acridinium salt and oxalate ester.
[0185] One of the ways in which an anti-CXCL13 antibody, or
antigen-binding fragment, variant, or derivative thereof, can be
detectably labeled is by linking the same to an enzyme and using
the linked product in an enzyme immunoassay (EIA) (Voller, A., "The
Enzyme Linked Immunosorbent Assay (ELISA)" Microbiological
Associates Quarterly Publication, Walkersville, Md.; Diagnostic
Horizons 2:1-7 (1978); Voller et al., J. Clin. Pathol. 31:507-520
(1978); Butler, Meth. Enzymol. 73:482-523 (1981); Maggio, ed.
(1980) Enzyme Immunoassay, CRC Press, Boca Raton, Fla.; Ishikawa et
al., eds. (1981) Enzyme Immunoassay (Kgaku Shoin, Tokyo). The
enzyme, which is bound to the anti-CXCL13 antibody will react with
an appropriate substrate, e.g., a chromogenic substrate, in such a
manner as to produce a chemical moiety which can be detected, for
example, by spectrophotometric, fluorimetric or by visual means.
Enzymes which can be used to detectably label the antibody include,
but are not limited to, malate dehydrogenase, staphylococcal
nuclease, delta-5-steroid isomerase, yeast alcohol dehydrogenase,
alpha-glycerophosphate, dehydrogenase, triose phosphate isomerase,
horseradish peroxidase, alkaline phosphatase, asparaginase, glucose
oxidase, beta-galactosidase, ribonuclease, urease, catalase,
glucose-6-phosphate dehydrogenase, glucoamylase and
acetylcholinesterase. Additionally, the detection can be
accomplished by colorimetric methods which employ a chromogenic
substrate for the enzyme. Detection may also be accomplished by
visual comparison of the extent of enzymatic reaction of a
substrate in comparison with similarly prepared standards.
[0186] Detection may also be accomplished using any of a variety of
other immunoassays. For example, by radioactively labeling the
anti-CXCL13 binding molecule, e.g., antibody, or antigen-binding
fragment, variant, or derivative thereof, it is possible to detect
the binding molecule through the use of a radioimmunoassay (RIA)
(see, for example, Weintraub (March, 1986) Principles of
Radioimmunoassays, Seventh Training Course on Radioligand Assay
Techniques (The Endocrine Society), which is incorporated by
reference herein). The radioactive isotope can be detected by means
including, but not limited to, a gamma counter, a scintillation
counter, or autoradiography.
[0187] An anti-CXCL13 binding molecule, e.g., antibody, or
antigen-binding fragment, variant, or derivative thereof, can also
be detectably labeled using fluorescence emitting metals such as
152Eu, or others of the lanthanide series. These metals can be
attached to the binding molecule using such metal chelating groups
as diethylenetriaminepentacetic acid (DTPA) or
ethylenediaminetetraacetic acid (EDTA).
[0188] Techniques for conjugating various moieties to an antibody,
e.g., an anti-CXCL13 antibody or antigen-binding fragment, variant,
or derivative thereof, are well known, see, e.g., Amon et al.
(1985) "Monoclonal Antibodies for Immunotargeting of Drags in
Cancer Therapy," in Monoclonal Antibodies and Cancer Therapy, ed.
Reisfeld et al. (Alan R. Liss, Inc.), pp. 243-56; Hellstrom et al.
(1987) "Antibodies for Drug Delivery," in Controlled Drug Delivery,
ed. Robinson et al. (2nd ed.; Marcel Dekker, Inc.), pp. 623-53);
Thorpe (1985) "Antibody Carriers of Cytotoxic Agents in Cancer
Therapy: A Review," in Monoclonal Antibodies '84: Biological and
Clinical Applications, ed. Pinchera et al., pp. 475-506; "Analysis,
Results, and Future Prospective of the Therapeutic Use of
Radiolabeled Antibody in Cancer Therapy," in Monoclonal Antibodies
for Cancer Detection and Therapy, ed. Baldwin et al., Academic
Press, pp. 303-16 (1985); and Thorpe et al., Immunol. Rev.
62:119-58 (1982).
VI. Expression of Antibody Polypeptides
[0189] DNA sequences that encode the light and the heavy chains of
the antibody may be made, either simultaneously or separately,
using reverse transcriptase and DNA polymerase in accordance with
well known methods. PCR may be initiated by consensus constant
region primers or by more specific primers based on the published
heavy and light chain DNA and amino acid sequences. As discussed
above, PCR also may be used to isolate DNA clones encoding the
antibody light and heavy chains In this case the libraries may be
screened by consensus primers or larger homologous probes, such as
mouse constant region probes.
[0190] DNA, typically plasmid DNA, may be isolated from the cells
using techniques known in the art, restriction mapped and sequenced
in accordance with standard, well known techniques set forth in
detail, e.g., in the foregoing references relating to recombinant
DNA techniques. Of course, the DNA may be synthetic according to
the present invention at any point during the isolation process or
subsequent analysis.
[0191] Following manipulation of the isolated genetic material to
provide anti-CXCL13 antibodies, or antigen-binding fragments,
variants, or derivatives thereof, of the invention, the
polynucleotides encoding the anti-CXCL13 antibodies are typically
inserted in an expression vector for introduction into host cells
that may be used to produce the desired quantity of anti-CXCL 13
antibody.
[0192] Recombinant expression of an antibody, or fragment,
derivative or analog thereof, e.g., a heavy or light chain of an
antibody that binds to a target molecule described herein, e.g.,
CXCL13, requires construction of an expression vector containing
one or more polynucleotides that encode the antibody. Once a
polynucleotide encoding an antibody molecule or a heavy or light
chain of an antibody, or portion thereof (preferably containing the
heavy or light chain variable domain), of the invention has been
obtained, the vector for the production of the antibody molecule
may be produced by recombinant DNA technology using techniques well
known in the art. Thus, methods for preparing a protein by
expressing a polynucleotide containing an antibody encoding
nucleotide sequence are described herein. Methods that are well
known to those skilled in the art can be used to construct
expression vectors containing antibody coding sequences and
appropriate transcriptional and translational control signals.
These methods include, for example, in vitro recombinant DNA
techniques, synthetic techniques, and in vivo genetic
recombination. The invention, thus, provides replicable vectors
comprising a nucleotide sequence encoding an antibody molecule of
the invention, or a heavy or light chain thereof, or a heavy or
light chain variable domain, operably linked to a promoter. Such
vectors may include the nucleotide sequence encoding the constant
region of the antibody molecule (see, e.g., PCT Publication WO
86/05807; PCT Publication WO 89/01036; and U.S. Pat. No. 5,122,464)
and the variable domain of the antibody may be cloned into such a
vector for expression of the entire heavy or light chain.
[0193] The term "vector" or "expression vector" is used herein to
mean vectors used in accordance with the present invention as a
vehicle for introducing into and expressing a desired gene in a
host cell. As known to those skilled in the art, such vectors may
easily be selected from the group consisting of plasmids, phages,
viruses and retroviruses. In general, vectors compatible with the
instant invention will comprise a selection marker, appropriate
restriction sites to facilitate cloning of the desired gene and the
ability to enter and/or replicate in eukaryotic or prokaryotic
cells.
[0194] For the purposes of this invention, numerous expression
vector systems may be employed. For example, one class of vector
utilizes DNA elements that are derived from animal viruses such as
bovine papilloma virus, polyoma virus, adenovirus, vaccinia virus,
baculovirus, retroviruses (RSV, MMTV or MOMLV) or SV40 virus.
Others involve the use of polycistronic systems with internal
ribosome binding sites. Additionally, cells that have integrated
the DNA into their chromosomes may be selected by introducing one
or more markers which allow selection of transfected host cells.
The marker may provide for prototrophy to an auxotrophic host,
biocide resistance (e.g., antibiotics) or resistance to heavy
metals such as copper. The selectable marker gene can either be
directly linked to the DNA sequences to be expressed, or introduced
into the same cell by cotransformation. Additional elements may
also be needed for optimal synthesis of mRNA. These elements may
include signal sequences, splice signals, as well as
transcriptional promoters, enhancers, and termination signals.
[0195] In certain embodiments the cloned variable region genes are
inserted into an expression vector along with the heavy and light
chain constant region genes (e.g., human) synthesized as discussed
above. Of course, any expression vector that is capable of
eliciting expression in eukaryotic cells may be used in the present
invention. Examples of suitable vectors include, but are not
limited to plasmids pcDNA3, pHCMV/Zeo, pCR3.1, pEF 1/His, pIND/GS,
pRc/HCMV2, pSV40/Zeo2, pTRACER-HCMV, pUB6/V5-His, pVAX1, and
pZeoSV2 (available from Invitrogen, San Diego, Calif.), and plasmid
pCI (available from Promega, Madison, Wis.). In general, screening
large numbers of transformed cells for those that express suitably
high levels if immunoglobulin heavy and light chains is routine
experimentation that can be carried out, for example, by robotic
systems.
[0196] More generally, once the vector or DNA sequence encoding a
monomeric subunit of the anti-CXCL13 antibody has been prepared,
the expression vector may be introduced into an appropriate host
cell. Introduction of the plasmid into the host cell can be
accomplished by various techniques well known to those of skill in
the art. These include, but are not limited to, transfection
(including electrophoresis and electroporation), protoplast fusion,
calcium phosphate precipitation, cell fusion with enveloped DNA,
microinjection, and infection with intact virus. See, Ridgway
(1988) "Mammalian Expression Vectors" in Vectors, ed. Rodriguez and
Denhardt (Butterworths, Boston, Mass.), Chapter 24.2, pp. 470-472.
Typically, plasmid introduction into the host is via
electroporation. The host cells harboring the expression construct
are grown under conditions appropriate to the production of the
light chains and heavy chains, and assayed for heavy and/or light
chain protein synthesis. Exemplary assay techniques include
enzyme-linked immunosorbent assay (ELISA), radioimmunoassay (RIA),
or fluorescence-activated cell sorter analysis (FACS),
immunohistochemistry and the like.
[0197] The expression vector is transferred to a host cell by
conventional techniques, and the transfected cells are then
cultured by conventional techniques to produce an antibody for use
in the methods described herein. Thus, the invention includes host
cells containing a polynucleotide encoding an antibody of the
invention, or a heavy or light chain thereof, operably linked to a
heterologous promoter. In preferred embodiments for the expression
of double-chained antibodies, vectors encoding both the heavy and
light chains may be co-expressed in the host cell for expression of
the entire immunoglobulin molecule, as detailed below.
[0198] As used herein, "host cells" refers to cells that harbor
vectors constructed using recombinant DNA techniques and encoding
at least one heterologous gene. In descriptions of processes for
isolation of antibodies from recombinant hosts, the terms "cell"
and "cell culture" are used interchangeably to denote the source of
antibody unless it is clearly specified otherwise. In other words,
recovery of polypeptide from the "cells" may mean either from spun
down whole cells, or from the cell culture containing both the
medium and the suspended cells.
[0199] A variety of host-expression vector systems may be utilized
to express antibody molecules for use in the methods described
herein. Such host-expression systems represent vehicles by which
the coding sequences of interest may be produced and subsequently
purified, but also represent cells that may, when transformed or
transfected with the appropriate nucleotide coding sequences,
express an antibody molecule of the invention in situ. These
include, but are not limited to, microorganisms such as bacteria
(e.g., E. coli, B. subtilis) transformed with recombinant
bacteriophage DNA, plasmid DNA or cosmid DNA expression vectors
containing antibody coding sequences; yeast (e.g., Saccharomyces,
Pichia) transformed with recombinant yeast expression vectors
containing antibody coding sequences; insect cell systems infected
with recombinant virus expression vectors (e.g., baculovirus)
containing antibody coding sequences; plant cell systems infected
with recombinant virus expression vectors (e.g., cauliflower mosaic
virus, CaMV; tobacco mosaic virus, TMV) or transformed with
recombinant plasmid expression vectors (e.g., Ti plasmid)
containing antibody coding sequences; or mammalian cell systems
(e.g., COS, CHO, BLK, 293, 3T3 cells) harboring recombinant
expression constructs containing promoters derived from the genome
of mammalian cells (e.g., metallothionein promoter) or from
mammalian viruses (e.g., the adenovirus late promoter; the vaccinia
virus 7.5K promoter). In certain embodiments, bacterial cells such
as Escherichia coli, and in further embodiments, eukaryotic cells,
especially for the expression of whole recombinant antibody
molecule, are used for the expression of a recombinant antibody
molecule. For example, mammalian cells such as Chinese hamster
ovary cells (CHO), in conjunction with a vector such as the major
intermediate early gene promoter element from human cytomegalovirus
is an effective expression system for antibodies (Foecking et al.,
Gene 45:101 (1986); Cockett et al., Bio/Technology 8:2 (1990)).
[0200] The host cell line used for protein expression is often of
mammalian origin; those skilled in the art are credited with
ability to preferentially determine particular host cell lines that
are best suited for the desired gene product to be expressed
therein. Exemplary host cell lines include, but are not limited to,
CHO (Chinese Hamster Ovary), DG44 and DUXB11 (Chinese Hamster Ovary
lines, DHFR minus), HELA (human cervical carcinoma), CVI (monkey
kidney line), COS (a derivative of CVI with SV40 T antigen), VERY,
BHK (baby hamster kidney), MDCK, 293, WI38, R1610 (Chinese hamster
fibroblast) BALBC/3T3 (mouse fibroblast), HAK (hamster kidney
line), SP2/O (mouse myeloma), P3.times. 63-Ag3.653 (mouse myeloma),
BFA-1c1BPT (bovine endothelial cells), RAJI (human lymphocyte) and
293 (human kidney). Host cell lines are typically available from
commercial services, the American Tissue Culture Collection or from
published literature.
[0201] In addition, a host cell strain may be chosen that modulates
the expression of the inserted sequences, or modifies and processes
the gene product in the specific fashion desired. Such
modifications (e.g., glycosylation) and processing (e.g., cleavage)
of protein products may be important for the function of the
protein. Different host cells have characteristic and specific
mechanisms for the post-translational processing and modification
of proteins and gene products. Appropriate cell lines or host
systems can be chosen to ensure the correct modification and
processing of the foreign protein expressed. To this end,
eukaryotic host cells that possess the cellular machinery for
proper processing of the primary transcript, glycosylation, and
phosphorylation of the gene product may be used.
[0202] For long-term, high-yield production of recombinant
proteins, stable expression is preferred. For example, cell lines
that stably express the antibody molecule may be engineered. Rather
than using expression vectors that contain viral origins of
replication, host cells can be transformed with DNA controlled by
appropriate expression control elements (e.g., promoter, enhancer,
sequences, transcription terminators, polyadenylation sites, etc.),
and a selectable marker. Following the introduction of the foreign
DNA, engineered cells may be allowed to grow for 1-2 days in an
enriched media, and then are switched to a selective media. The
selectable marker in the recombinant plasmid confers resistance to
the selection and allows cells to stably integrate the plasmid into
their chromosomes and grow to form foci which in turn can be cloned
and expanded into cell lines. This method may advantageously be
used to engineer cell lines which stably express the antibody
molecule.
[0203] A number of selection systems may be used, including, but
not limited to, the herpes simplex virus thymidine kinase (Wigler
et al., Cell 11:223 (1977)), hypoxanthine-guanine
phosphoribosyltransferase (Szybalska and Szybalski, Proc. Natl.
Acad. Sci. USA 48:202 (1992)), and adenine
phosphoribosyltransferase (Lowy et al., Cell 22:817 (1980)) genes
can be employed in tk-, hgprt- or aprt-cells, respectively. Also,
antimetabolite resistance can be used as the basis of selection for
the following genes: dhfr, which confers resistance to methotrexate
(Wigler et al., Natl. Acad. Sci. USA 77:357 (1980); O'Hare et al.,
Proc. Natl. Acad. Sci. USA 78:1527 (1981)); gpt, which confers
resistance to mycophenolic acid (Mulligan and Berg, Proc. Natl.
Acad. Sci. USA 78:2072 (1981)); neo, which confers resistance to
the aminoglycoside G-418 Clinical Pharmacy 12:488-505; Wu and Wu,
Biotherapy 3:87-95 (1991); Tolstoshev, Ann. Rev. Pharmacol.
Toxicol. 32:573-596 (1993); Mulligan, Science 260:926-932 (1993);
and Morgan and Anderson, Ann. Rev. Biochem. 62:191-217 (1993); TIB
TECH 11(5):155-215 (May, 1993); and hygro, which confers resistance
to hygromycin (Santerre et al., Gene 30:147 (1984). Methods
commonly known in the art of recombinant DNA technology which can
be used are described in Ausubel et al. (1993) Current Protocols in
Molecular Biology (John Wiley & Sons, NY); Kriegler (1990)
"Gene Transfer and Expression" in A Laboratory Manual (Stockton
Press, NY); Dracopoli et al. (eds) (1994) Current Protocols in
Human Genetics (John Wiley & Sons, NY) Chapters 12 and 13;
Colberre-Garapin et al. (1981) J. Mol. Biol. 150:1, which are
incorporated by reference herein in their entireties.
[0204] The expression levels of an antibody molecule can be
increased by vector amplification (for a review, see Bebbington and
Hentschel (1987) "The Use of Vectors Based on Gene Amplification
for the Expression of Cloned Genes in Mammalian Cells in DNA
Cloning" (Academic Press, NY) Vol. 3. When a marker in the vector
system expressing antibody is amplifiable, increase in the level of
inhibitor present in culture of host cell will increase the number
of copies of the marker gene. Since the amplified region is
associated with the antibody gene, production of the antibody will
also increase (Crouse et al., Mol. Cell. Biol. 3:257 (1983)).
[0205] In vitro production allows scale-up to give large amounts of
the desired polypeptides. Techniques for mammalian cell cultivation
under tissue culture conditions are known in the art and include
homogeneous suspension culture, e.g. in an airlift reactor or in a
continuous stirrer reactor, or immobilized or entrapped cell
culture, e.g. in hollow fibers, microcapsules, on agarose
microbeads or ceramic cartridges. If necessary and/or desired, the
solutions of polypeptides can be purified by the customary
chromatography methods, for example gel filtration, ion-exchange
chromatography, chromatography over DEAE-cellulose or
(immuno-)affinity chromatography, e.g., after preferential
biosynthesis of a synthetic hinge region polypeptide or prior to or
subsequent to the HIC chromatography step described herein.
[0206] Genes encoding anti-CXCL13 antibodies, or antigen-binding
fragments, variants, or derivatives thereof of the invention can
also be expressed in non-mammalian cells such as insect, bacteria
or yeast or plant cells. Bacteria that readily take up nucleic
acids include members of the enterobacteriaceae, such as strains of
Escherichia coli or Salmonella; Bacillaceae, such as Bacillus
subtilis; Pneumococcus; Streptococcus, and Haemophilus influenzae.
It will farther be appreciated that, when expressed in bacteria,
the heterologous polypeptides typically become part of inclusion
bodies. The heterologous polypeptides must be isolated, purified
and then assembled into functional molecules. Where tetravalent
forms of antibodies are desired, the subunits will then
self-assemble into tetravalent antibodies (WO 02/096948A2).
[0207] In bacterial systems, a number of expression vectors may be
advantageously selected depending upon the use intended for the
antibody molecule being expressed. For example, when a large
quantity of such a protein is to be produced, for the generation of
pharmaceutical compositions of an antibody molecule, vectors which
direct the expression of high levels of fusion protein products
that are readily purified may be desirable. Such vectors include,
but are not limited, to the E. coli expression vector pUR278
(Ruther et al., EMBO J. 2:1791 (1983)), in which the antibody
coding sequence may be ligated individually into the vector in
frame with the lacZ coding region so that a fusion protein is
produced; pIN vectors (Inouye and Inouye, Nucleic Acids Res.
13:3101-3109 (1985); Van Heeke and Schuster, J. Biol. Chem.
24:5503-5509 (1989)); and the like. pGEX vectors may also be used
to express foreign polypeptides as fusion proteins with glutathione
S-transferase (GST). In general, such fusion proteins are soluble
and can easily be purified from lysed cells by adsorption and
binding to a matrix glutathione-agarose beads followed by elution
in the presence of free glutathione. The pGEX vectors are designed
to include thrombin or factor Xa protease cleavage sites so that
the cloned target gene product can be released from the GST
moiety.
[0208] In addition to prokaryotes, eukaryotic microbes may also be
used. Saccharomyces cerevisiae, or common baker's yeast, is the
most commonly used among eukaryotic microorganisms although a
number of other strains are commonly available, e.g., Pichia
pastoris.
[0209] For expression in Saccharomyces, the plasmid YRp7, for
example, (Stinchcomb et al., Nature 282:39 (1979); Kingsman et al.,
Gene 7:141 (1979); Tschemper et al., Gene 10:157 (1980)) is
commonly used. This plasmid already contains the TRP1 gene, which
provides a selection marker for a mutant strain of yeast lacking
the ability to grow in tryptophan, for example ATCC No. 44076 or
PEP4-1 (Jones, Genetics 85:12 (1977)). The presence of the trp1
lesion as a characteristic of the yeast host cell genome then
provides an effective environment for detecting transformation by
growth in the absence of tryptophan.
[0210] In an insect system, Autographa califormica nuclear
polyhedrosis virus (AcNPV) is typically used as a vector to express
foreign genes. The virus grows in Spodoptera frugiperda cells. The
antibody coding sequence may be cloned individually into
non-essential regions (for example the polyhedrin gene) of the
virus and placed under control of an AcNPV promoter (for example
the polyhedrin promoter).
[0211] Once an antibody molecule of the invention has been
recombinantly expressed, it may be purified by any method known in
the art for purification of an immunoglobulin molecule, for
example, by chromatography (e.g., ion exchange, affinity,
particularly by affinity for the specific antigen after Protein A,
and sizing column chromatography), centrifugation, differential
solubility, or by any other standard technique for the purification
of proteins. Alternatively, a method for increasing the affinity of
antibodies of the invention is disclosed in U.S. Patent Application
Publication No. 2002 0123057 A1.
VII. Treatment Methods Using Therapeutic Anti-CXCL13 Antibodies
[0212] Lymphoid chernokine CXCL13 is expressed by follicular
dendritic cells (FDCs) and macrophages. Through its receptor,
CXCR5, which is found on a variety of immune cells (e.g., B cells,
follicular helper T cells, and recently-activated T cells), CXCL13
induces intracellular changes necessary for maintenance of immune
system homeostasis, lymphoid organogenesis, leukocyte trafficking
and chemotactic migration as well as development of secondary
lymphoid tissue (e.g. germinal centers). Overexpression of CXCL13
and its receptor CXCR5 have been implicated into a variety of
autoimmune diseases (e.g., Multiple sclerosis (see, e.g., Corcione
et al., PNAS 101(30):11064-11069 (2004); Serafini et al., Brain
Pathol. 14:164-174 (2004); Magliozzi et al., Brain 130: 1089-1104
(2007)), arthritis (e.g., Rheumatoid arthritis (see, e.g., Rioja et
al., Arthritis & Rheumatism 58(8):2257-2267 (2008); Shi et al.,
J. Immuno. 166:650-655 (2001); Schmutz et al., Arthritis Restearch
and Therapy 7:R217--R229 (2005); Hjelmstrom et al., J. Leukocyte
Bio. 69:331-339 (2001)), chronic gastritis (see, e.g., Hjelmstrom
et al.; Mazzucchelli et al., Brain 130:1089-1104 (2007)), gastric
lymphomas (see, e.g., id.; Nobutani et al., FEMS Immunol Med
Microbiol 60:156-164 (2010)), transplant rejection (see, e.g.,
Steinmetz et al., Kidney International 67:1616-1621 (2005)),
Sjogren syndrome (SS) (see, e.g., Barone et al., J. Immuno.
180:5130-5140 (2008); Hjelmstrom et al.), Systemic Lupus
Erythematosis (SLE) (see, e.g., Steinmetz et al., Lee et al., J.
Rheum. 37(1):45-52 (2010); Schiffer et al., J. Immun. 171:489-497
(2003)), active mixed cryoglobulinemia (MC) vasculitis in Hepatitis
C virus infection (see, e.g., Sansonno et al., Blood
112(5):1620-1627 (2008)), Juvenile dermatomyositis (see, e.g., de
Padilla et al., Arthritis & Rheumatism 60(4):1160-1172 (2009)),
and Myastenia Gravis (see, e.g., Matsumoto et al., J. Immuno.
176:5100-5107 (2006); Meraouna et al., Blood 108(2):432-440 (2006);
Saito et al., J. Neuroimmunol 170:172-178 (2005)) and certain
cancers (e.g., Burkitt's lymphoma (see, e.g., Forster et al., Blood
84:830-840 (1994); Forster et al., Cell 87:1037-1047 (1996)),
Non-Hodgkin Lymphoma (see, e.g., Trentin et al., Ann.Rev.Immunol.
6:251-81 (1988); Gong et al., J. Immunol. 174: 817-826 (2005);
Hamaguchi et al., J. Immunol. 174:4389-4399 (2005)), Carcinoma
(e.g., colon and pancreatic) (see, e.g., Gunther et al., Int. J.
Cancer 116:726-733 (2005); Meijer et al., Cancer Res. 66: 9576-9582
(2006)), breast cancer (see, e.g., Panse et al., British Journal of
Cancer 99:930-938 (2008)), Chronic lymphocytic leukemia (CLL) (see,
e.g., Burkle et al., Blood 110:3316-3325 (2007)), and prostate
cancer (see, e.g., Singh et al., Cancer Letters 283 (1):29-35
(2009)). Methods of the invention for inhibition of CXCL13 activity
would be expected to have a therapeutic effect on the above
mentioned disorders.
[0213] Certain methods of the invention are directed to the use of
anti-CXCL13 binding molecules, e.g., antibodies, including
antigen-binding fragments, variants, and derivatives thereof, to
treat patients having a disease associated with CXCL13-expressing
cells, e.g., CXCL13-overexpressing cells. By "CXCL13-expressing
cell" is intended normal and malignant cells expressing CXCL13
antigen. Methods for detecting CXCL13 expression in cells are well
known in the art and include, but are not limited to, PCR
techniques, immunohistochemistry, flow cytometry, Western blot,
ELISA, and the like.
[0214] Although the following discussion refers to diagnostic
methods and treatment of various diseases and disorders with an
anti-CXCL13 antibody of the invention, the methods described herein
are also applicable to the antigen-binding fragments, variants, and
derivatives of these anti-CXCL13 antibodies that retain the desired
properties of the anti-CXCL13 antibodies of the invention, e.g.,
capable of specifically binding CXCL13, e.g., human, primate,
mouse, or human and mouse CXCL13, and having CXCL13 neutralizing
activity.
[0215] In one embodiment, treatment includes the application or
administration of an anti-CXCL13 binding molecule, e.g., an
antibody or antigen binding fragment thereof, of the current
invention to a patient, or application or administration of the
anti-CXCL13 binding molecule to an isolated tissue or cell line
from a patient, where the patient has a disease, a symptom of a
disease, or a predisposition toward a disease. In another
embodiment, treatment is also intended to include the application
or administration of a pharmaceutical composition comprising the
anti-CXCL13 binding molecule, e.g., an antibody or antigen binding
fragment thereof, of the current invention to a patient, or
application or administration of a pharmaceutical composition
comprising the anti-CXCL13 binding molecule to an isolated tissue
or cell line from a patient, who has a disease, a symptom of a
disease, or a predisposition toward a disease.
[0216] The anti-CXCL13 binding molecules, e.g., antibodies or
binding fragments thereof, of the present invention are useful for
the treatment of various malignant and non-malignant tumors. By
"anti-tumor activity" is intended a reduction in the rate of
malignant CXCL13-expressing cell proliferation or accumulation, and
hence a decline in growth rate of an existing tumor or in a tumor
that arises during therapy, and/or destruction of existing
neoplastic (tumor) cells or newly formed neoplastic cells, and
hence a decrease in the overall size of a tumor during therapy. For
example, therapy with at least one anti-CXCL13 antibody causes a
physiological response that is beneficial with respect to treatment
of disease states associated with CXCL13-expressing cells in a
human.
[0217] In one embodiment, the invention relates to anti-CXCL13
binding molecules, e.g., antibodies or binding fragments thereof,
according to the present invention for use as a medicament, in
particular for use in the treatment or prophylaxis of cancer or for
use in a precancerous condition or lesion. In certain embodiments,
an anti-CXCL13 binding molecule, e.g., an antibody or binding
fragment thereof, e.g., MAb 5261, of the invention is used for the
treatment of a CXCL13 over-expressing cancer. In certain
embodiments, an anti-CXCL13 binding molecule, e.g., an antibody or
binding fragment thereof, of the invention is used for the
treatment of a CXCL13 expressing or over-expressing leukemia,
lymphoma (e.g., MALT lymphoma), colon, pancreatic, stomach,
esophageal, breast, or prostate cancer. In one embodiment, an
anti-CXCL13 binding molecule, e.g., an antibody or binding fragment
thereof, of the invention is used for the treatment of a carcinoma,
e.g., colon or prostate carcinoma. In one embodiment, the an
anti-CXCL13 binding molecule, e.g., an antibody or binding fragment
thereof, of the invention is used for the treatment of a CXCR5
expressing or over-expressing cancer.
[0218] The effectiveness of an anti-CXCL13 binding molecule, e.g.,
an antibody or binding fragment thereof, for the treatment or
prevention of cancer can be shown using animal models. For example,
the effectiveness of an anti-CXCL13 binding molecule, e.g., an
antibody or binding fragment thereof, of the invention for the
treatment or prevention of prostate cancer can be shown using an
animal model for prostate cancer, e.g., mice injected with PC3-luc
human prostate carcinoma cells and treated with an anti-CXCL13
binding molecule of the invention. In another example, the
effectiveness of an anti-CXCL13 binding molecule, e.g., an antibody
or binding fragment thereof, of the invention for the treatment or
prevention of colon cancer can be shown using an animal model for
colon cancer, e.g., mice injected with CT26 colon carcinoma cells
and treated with an anti-CXCL13 binding molecule of the invention.
In another example, the effectiveness of an anti-CXCL13 binding
molecule, e.g., an antibody or binding fragment thereof, of the
invention for the treatment or prevention of MALT lymphoma can be
shown using an animal model for gastric MALT lymphoma, e.g., mice
infected with Helicobacter bacteria (see Nobutani et al. (2010))
and treated with an anti-CXCL13 binding molecule of the invention.
The Nobutani et al. model may also be used to assess the
effectiveness of an anti-CXCL13 binding molecule, e.g., an antibody
or binding fragment thereof, of the invention for the reduction of
gastric lymphoid follicles of Helicobacter-infected tissues.
[0219] In accordance with the methods of the present invention, at
least one anti-CXCL13 binding molecule, e.g., an antibody or
antigen binding fragment thereof, as defined elsewhere herein is
used to promote a positive therapeutic response with respect to a
malignant human cell. By "positive therapeutic response" with
respect to cancer treatment is intended an improvement in the
disease in association with the anti-tumor activity of these
binding molecules, e.g., antibodies or fragments thereof, and/or an
improvement in the symptoms associated with the disease. That is,
an anti-proliferative effect, the prevention of further tumor
outgrowths, a reduction in tumor size, a decrease in tumor
vasculature, a reduction in the number of cancer cells, and/or a
decrease in one or more symptoms associated with the disease can be
observed. Thus, for example, an improvement in the disease may be
characterized as a complete response. By "complete response" is
intended an absence of clinically detectable disease with
normalization of any previously abnormal radiographic studies, bone
marrow, and cerebrospinal fluid (CSF). Such a response must persist
for at least one month following treatment according to the methods
of the invention. Alternatively, an improvement in the disease may
be categorized as being a partial response. By "partial response"
is intended at least about a 50% decrease in all measurable tumor
burden (i.e., the number of tumor cells present in the subject) in
the absence of new lesions and persisting for at least one month.
Such a response is applicable to measurable tumors only.
[0220] Tumor response can be assessed for changes in tumor
morphology (i.e., overall tumor burden, tumor cell count, and the
like) using screening techniques such as bioluminescent imaging,
for example, luciferase imaging, bone scan imaging, and tumor
biopsy sampling including bone marrow aspiration (BMA). In addition
to these positive therapeutic responses, the subject undergoing
therapy with the anti-CXCL13 binding molecule, e.g., an antibody or
antigen-binding fragment thereof, may experience the beneficial
effect of an improvement in the symptoms associated with the
disease. For example, the subject may experience a decrease in the
so-called B symptoms, e.g., night sweats, fever, weight loss,
and/or urticaria.
[0221] The anti-CXCL13 binding molecules, e.g., antibodies or
antigen binding fragments thereof, described herein may also find
use in the treatment or prevention of inflammatory diseases and
deficiencies or disorders of the immune system that are associated
with CXCL13 expressing cells. Inflammatory diseases are
characterized by inflammation and tissue destruction, or a
combination thereof. By "anti-inflammatory activity" is intended a
reduction or prevention of inflammation. "Inflammatory disease"
includes any inflammatory immune-mediated process where the
initiating event or target of the immune response involves non-self
antigen(s), including, for example, alloantigens, xenoantigens,
viral antigens, bacterial antigens, unknown antigens, or
allergens.
[0222] In one embodiment, the inflammatory disease is associated
with a bacterial infection, e.g., a Helicobacter infection, e.g., a
H. pylori, H. heilmannii, H. acinonychis, H. anseris, H. aurati, H.
baculiformis, H. bilis, H. bizzozeronii, H. brantae, H.
candadensis, H. canis, H. cholecystus, H. cinaedi, H.
cynogastricus, H. equorum, H. felis, H. fenelliae, H. ganmani, H.
hepaticus, H. mesocricetorum, H. marmotae, H. muridarum, H.
mustelae, H. pametensis, H. pullorum, H. rappini, H. rodentium, H.
salomonis, H. suis, H. trogontum, H. typhlonius, and H.
winghamensis infection. In a certain embodiments, the Helicobacter
infection is a H. pylori or a H. heilmannii infection. In a further
embodiment, the Helicobacter-associated inflammatory disease is
MALT lymphoma, a gastric cancer (e.g., esophageal or stomach
cancer), a gastric or duodenal ulcer, gastritis (an inflammation of
the stomach lining), or a gastric lesion (see, e.g., Chen et al., J
Clin Pathol 55(2):133-7 (2002); Genta et al., Hum Pathol
24(6):577-83 (1993); Okiyama et al., Pathol Int 55(7):398-404
(2005)).
[0223] In one embodiment, the inflammatory disease is an
inflammatory disorder of the peripheral or central nervous
system.
[0224] Further, for purposes of the present invention, the term
"inflammatory disease(s)" includes, but is not limited to,
"autoimmune disease(s)." As used herein, the term "autoimmunity" is
generally understood to encompass inflammatory immune-mediated
processes involving "self" antigens. In autoimmune diseases, self
antigen(s) trigger host immune responses.
[0225] In one embodiment, the anti-CXCL13 binding molecule, e.g.,
an antibody or antigen binding fragment, of the invention is used
to treat or prevent multiple sclerosis (MS). MS, also known as
disseminated sclerosis or encephalomyelitis disseminata, is an
autoimmune condition, in which the immune system attacks the
central nervous system, leading to demyelination. The name
"multiple sclerosis" refers to the scars (scleroses, also referred
to as plaques or lesions) that form in the nervous system. MS
lesions commonly involve white matter areas close to the ventricles
of the cerebellum, brain stem, basal ganglia and spinal cord, and
the optic nerve. MS results in destruction of oligodendrocytes, the
cells responsible for creating and maintaining the myelin sheath.
MS results in a thinning or complete loss of myelin and, as the
disease advances, transection of axons.
[0226] Neurological symptoms can vary with MS, and the disease
often progresses to physical and cognitive disability. MS takes
several forms, with new symptoms occurring either in discrete
attacks (relapsing forms) or slowly accumulating over time
(progressive forms). Between attacks, symptoms may go away
completely, but permanent neurological damage often results,
especially as the disease advances.
[0227] Experimental Autoimmune Encephalomyelitis (EAE) is a widely
accepted animal model of multiple sclerosis. EAE is a demyelinating
disease of the CNS that progressively results in escalating degrees
of ascending paralysis with inflammation primarily targeting the
spinal cord. The disease can assume an acute, chronic or
relapsing-remitting course that is dependent upon the method of
induction and type of animal used. Bagaeva et al. has shown that
follicles containing B-cells and CXCL13-expressing dendritic cells
formed in inflamed meninges of mice with relapsing-remitting EAE
with levels of CXCL13 expression rising steadily throughout the
course of disease. CXCL13-deficient mice experienced mild disease
with decreased relapse rate, and blockade of CXCL13 with
anti-CXCL13 MAb led to the disease attenuation in passively induced
EAE in B10.PL mice. Bagaeva et al., J. Immuno. 176:7676-7685
(2006).
[0228] Neutralization of CXCL13 using an anti-CXCL13 monoclonal
antibody or antigen binding fragment thereof of the invention,
e.g., MAb 5261, may be used to reduce the severity of MS through
several different mechanisms, e.g., blockade of CXCL13 interaction
with its receptor resulting, e.g., in interference with B and
follicular B-helper T cell migration into inflamed tissues and
germinal center formation.
[0229] In one embodiment, the anti-CXCL13 binding molecule, e.g.,
an antibody or antigen binding fragment, of the invention is use to
treat or prevent systemic lupus erythematosus (SLE or lupus). SLE
is an autoimmune disease that involves multiple organs and is
characterized by the spontaneous formation of ectopic germinal
centers and autoantibody production against a number of nuclear
antigens. SLE most often affects the heart, joints, skin, lungs,
blood vessels, liver, kidneys, and nervous system.
[0230] Activated T cells, B cells and their migration-promoting
chemokine CXCL13 play critical roles in the formation of organized
lymphoid tissue seen in inflamed ectopic sites of multiple
autoimmune disorders including SLE. Lupus-prone New Zealand Black X
New Zealand White F 1 (NZB/NZWF 1) mice spontaneously develop
high-titer anti-dsDNA antibodies and severe proliferative
glomerulonephritis caused by formation of immune complexes in
glomeruli of the kidneys. The development of lupus-like symptoms in
these mice is accompanied by increased expression of CXCL13 by
dendritic cells in kidneys and thymus (Ishikawa et al., J. Exp.
Med. 193(12):1393-1402 (2001); Schiffer et al., J. Immun.
171:489-497 (2003)).
[0231] Neutralization of CXCL13 using an anti-CXCL13 monoclonal
antibody or antigen binding fragment thereof of the invention,
e.g., MAb 5261, may be used to reduce the severity of SLE through
several different mechanisms, e.g., blockade of CXCL13 interaction
with its receptor resulting, e.g., in interference with B and
follicular B-helper T cell migration into inflamed tissues and
germinal center formation.
[0232] In one embodiment, the anti-CXCL13 binding molecule, e.g.,
an antibody or antigen binding fragment, of the invention is used
to treat or prevent arthritis, e.g., Rheumatoid Arthritis.
Rheumatoid arthritis (RA) is one of the most common autoimmune
diseases which affect 2-4% of people in the United States. It is a
chronic, progressive, systemic inflammatory disorder characterized
by fusion of synovial joints, cartilage erosion and bone
destruction. In RA, T-cells, B-cells, macrophages and dendritic
cells (DCs) accumulate in the synovial layer forming pannus
(invasive region of synovium that erodes into cartilage and bone).
Moreover, T and B cells within the synovial lesions organize into
lymphoid germinal center-like structures that support autoantibody
(rheumatoid factor) production and, therefore, directly contribute
to the disease pathogenesis (Takemura et al., J. Immuno.
167:1072-1080 (2001); Shi et al., J. of Immuno. 166:650-655
(2001)).
[0233] Lymphoid chemokine CXCL13, produced by synovial fibroblasts,
selected endothelial cells, synovial antigen-primed T helper cells
and FDCs (Takemura et al. (2001); Shi et al. (2001); Manzo et al.,
Arthritis & Rheumatism 58(11):3377-3387 (2008)), plays a
critical role in the germinal center formation in the synovial
tissue, by directing CXCR5-positive lymphoid cell (primarily B
cells and follicular T helper cells) migration into the inflamed
synovium.
[0234] Clinically, plasma levels of CXCL13 in RA patients
correlated with disease severity, as significantly higher levels of
CXCL13 were found in plasma from the patients with active RA
comparing to the controls and the patient with the quiescent
disease (Rioja et al., Arthritis & Rheumatism 58(8):2257-2267
(2008)). In addition, CXCR5 receptor was upregulated in synovium of
RA patients and present on infiltrating B and T cells and also on
macrophages and endothelial cells (Schmutz et al., Arthritis
Research Therapy 7:R217--R229 (2005)).
[0235] Collagen-induced arthritis (CIA) in mice and rats is a
well-established model of human Rheumatoid arthritis (RA). The
disease is typically induced by intradermal injection of bovine
type II collagen emulsified in Complete Freund's Adjuvant (CFA) and
is characterized by production of mouse collagen antibodies and,
subsequently, progressive development of arthritis in the paws.
Stannard et al. showed that CXCL13 neutralization with rat
anti-murine CXCL13 antibodies led to significant reduction in
arthritic score and the severity of joint destruction in arthritic
DBA/1 mice. Stannard et al., "Neutralization of CXCL13 impacts
B-cell trafficking and reduces severity of established experimental
arthritis," Presented at American College of Rheumatology 2008
Annual Scientific Meeting (2008).
[0236] Neutralization of CXCL13 using an anti-CXCL13 monoclonal
antibody or antigen binding fragment thereof of the invention,
e.g., MAb 5261, may be used to reduce the severity of arthritis,
e.g., Rheumatoid Arthritis, through several different mechanisms,
e.g., blockade of CXCL13 interaction with its receptor resulting,
e.g., in interference with B and follicular B-helper T cell
migration into inflamed tissues and germinal center formation. In
addition, an anti-CXCL13 monoclonal antibody or antigen binding
fragment thereof of the invention, e.g., MAb 5261, may be used to
reduce RANKL expression and bone loss, e.g., in a subject with
RANKL overexpression.
[0237] In accordance with the methods of the present invention, at
least one anti-CXCL13 binding molecule, e.g., an antibody or
antigen binding fragment thereof, as defined elsewhere herein is
used to promote a positive therapeutic response with respect to
treatment or prevention of an autoimmune disease and/or
inflammatory disease. By "positive therapeutic response" with
respect to an autoimmune disease and/or inflammatory disease is
intended an improvement in the disease in association with the
anti-inflammatory activity, anti-angiogenic activity,
anti-apoptotic activity, or the like, of these antibodies, and/or
an improvement in the symptoms associated with the disease. That
is, an anti-proliferative effect, the prevention of further
proliferation of the CXCL13-expressing cell, a reduction in the
inflammatory response including but not limited to reduced
secretion of inflammatory cytokines, adhesion molecules, proteases,
immunoglobulins (in instances where the CXCL13 bearing cell is a B
cell), combinations thereof, and the like, increased production of
anti-inflammatory proteins, a reduction in the number of
autoreactive cells, an increase in immune tolerance, inhibition of
autoreactive cell survival, reduction in apoptosis, reduction in
endothelial cell migration, increase in spontaneous monocyte
migration, reduction in and/or a decrease in one or more symptoms
mediated by stimulation of CXCL13-expressing cells can be observed.
Such positive therapeutic responses are not limited to the route of
administration and may comprise administration to the donor, the
donor tissue (such as for example organ perfusion), the host, any
combination thereof, and the like.
[0238] Clinical response can be assessed using screening techniques
such as magnetic resonance imaging (MRI) scan, x-radiographic
imaging, computed tomographic (CT) scan, flow cytometry or
fluorescence-activated cell sorter (FACS) analysis, histology,
gross pathology, and blood chemistry, including but not limited to
changes detectable by ELISA, RIA, chromatography, and the like. In
addition to these positive therapeutic responses, the subject
undergoing therapy with the anti-CXCL13 binding molecule, e.g., an
antibody or antigen-binding fragment thereof, may experience the
beneficial effect of an improvement in the symptoms associated with
the disease.
[0239] A further embodiment of the invention is the use of an
anti-CXCL13 binding molecule, e.g., antibodies or antigen binding
fragments thereof, for diagnostic monitoring of protein levels in
tissue as part of a clinical testing procedure, e.g., to determine
the efficacy of a given treatment regimen. For example, detection
can be facilitated by coupling the antibody to a detectable
substance. Examples of detectable substances include various
enzymes, prosthetic groups, fluorescent materials, luminescent
materials, bioluminescent materials, and radioactive materials.
Examples of suitable enzymes include horseradish peroxidase,
alkaline phosphatase, .beta.-galactosidase, or
acetylcholinesterase; examples of suitable prosthetic group
complexes include streptavidin/biotin and avidin/biotin; examples
of suitable fluorescent materials include umbelliferone,
fluorescein, fluorescein isothiocyanate, rhodamine,
dichlorotriazinylamine fluorescein, dansyl chloride or
phycoerythrin; an example of a luminescent material includes
luminol; examples of bioluminescent materials include luciferase,
luciferin, and aequorin; and examples of suitable radioactive
material include .sup.125I, .sup.131I, .sup.35S, or .sup.3H.
VIII. Pharmaceutical Compositions and Administration Methods
[0240] Methods of preparing and administering the anti-CXCL13
binding molecule, e.g., antibodies, or antigen-binding fragments,
variants, or derivatives thereof, of the invention to a subject in
need thereof are well known to or are readily determined by those
skilled in the art. The route of administration of the anti-CXCL13
binding molecule, e.g, antibody, or antigen-binding fragment,
variant, or derivative thereof, may be, for example, oral,
parenteral, by inhalation or topical. The term parenteral as used
herein includes, e.g., intravenous, intraarterial, intraperitoneal,
intramuscular, subcutaneous, rectal, or vaginal administration.
While all these forms of administration are clearly contemplated as
being within the scope of the invention, an example of a form for
administration would be a solution for injection, in particular for
intravenous or intraarterial injection or drip. Usually, a suitable
pharmaceutical composition for injection may comprise a buffer
(e.g. acetate, phosphate or citrate buffer), a surfactant (e.g.
polysorbate), optionally a stabilizer agent (e.g. human albumin),
etc. However, in other methods compatible with the teachings
herein, anti-CXCL 13 binding molecules, e.g., antibodies, or
antigen-binding fragments, variants, or derivatives thereof, of the
invention can be delivered directly to the site of the adverse
cellular population thereby increasing the exposure of the diseased
tissue to the therapeutic agent.
[0241] As discussed herein, anti-CXCL13 binding molecules, e.g.,
antibodies, or antigen-binding fragments, variants, or derivatives
thereof, of the invention may be administered in a pharmaceutically
effective amount for the in vivo treatment of CXCL13-expressing
cell-mediated diseases such as certain types of cancers, autoimmune
diseases, and inflammatory diseases including central nervous
system (CNS) and peripheral nervous system (PNS) inflammatory
diseases. In this regard, it will be appreciated that the disclosed
binding molecules of the invention will be formulated so as to
facilitate administration and promote stability of the active
agent. In certain embodiments, pharmaceutical compositions in
accordance with the present invention comprise a pharmaceutically
acceptable, non-toxic, sterile carrier such as physiological
saline, non-toxic buffers, preservatives and the like. For the
purposes of the instant application, a pharmaceutically effective
amount of an anti-CXCL13 binding molecule, e.g., an antibody, or
antigen-binding fragment, variant, or derivative thereof,
conjugated or unconjugated, shall be held to mean an amount
sufficient to achieve effective binding to a target and to achieve
a benefit, e.g., to ameliorate symptoms of a disease or disorder or
to detect a substance or a cell.
[0242] The pharmaceutical compositions used in this invention
comprise pharmaceutically acceptable carriers, including, e.g., ion
exchangers, alumina, aluminum stearate, lecithin, serum proteins,
such as human serum albumin, buffer substances such as phosphates,
glycine, sorbic acid, potassium sorbate, partial glyceride mixtures
of saturated vegetable fatty acids, water, salts or electrolytes,
such as protamine sulfate, disodium hydrogen phosphate, potassium
hydrogen phosphate, sodium chloride, zinc salts, colloidal silica,
magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based
substances, polyethylene glycol, sodium carboxymethylcellulose,
polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers,
polyethylene glycol, and wool fat.
[0243] Preparations for parenteral administration include sterile
aqueous or non-aqueous solutions, suspensions, and emulsions.
Examples of non-aqueous solvents are propylene glycol, polyethylene
glycol, vegetable oils such as olive oil, and injectable organic
esters such as ethyl oleate. Aqueous carriers include, e.g., water,
alcoholic/aqueous solutions, emulsions or suspensions, including
saline and buffered media. In the subject invention,
pharmaceutically acceptable carriers include, but are not limited
to, 0.01-0.1 M, e.g., 0.05 M phosphate buffer or 0.8% saline. Other
common parenteral vehicles include sodium phosphate solutions,
Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's,
or fixed oils. Intravenous vehicles include fluid and nutrient
replenishers, electrolyte replenishers, such as those based on
Ringer's dextrose, and the like. Preservatives and other additives
may also be present such as, for example, antimicrobials,
antioxidants, chelating agents, and inert gases and the like.
[0244] More particularly, pharmaceutical compositions suitable for
injectable use include sterile aqueous solutions (where water
soluble) or dispersions and sterile powders for the extemporaneous
preparation of sterile injectable solutions or dispersions. In such
cases, the composition must be sterile and should be fluid to the
extent that easy syringability exists. It should be stable under
the conditions of manufacture and storage and will preferably be
preserved against the contaminating action of microorganisms, such
as bacteria and fungi. The carrier can be a solvent or dispersion
medium containing, for example, water, ethanol, polyol (e.g.,
glycerol, propylene glycol, and liquid polyethylene glycol, and the
like), and suitable mixtures thereof. The proper fluidity can be
maintained, for example, by the use of a coating such as lecithin,
by the maintenance of the required particle size in the case of
dispersion and by the use of surfactants. Suitable formulations for
use in the therapeutic methods disclosed herein are described in
Remington's Pharmaceutical Sciences (Mack Publishing Co.) 16th ed.
(1980).
[0245] Prevention of the action of microorganisms can be achieved
by various antibacterial and antifungal agents, for example,
parabens, chlorobutanol, phenol, ascorbic acid, thimerosal and the
like. In certain cases, it will be preferable to include isotonic
agents, for example, sugars, polyalcohols, such as mannitol,
sorbitol, or sodium chloride in the composition. Prolonged
absorption of the injectable compositions can be brought about by
including in the composition an agent which delays absorption, for
example, aluminum monostearate and gelatin.
[0246] In any case, sterile injectable solutions can be prepared by
incorporating an active compound (e.g., an anti-CXCL13 antibody, or
antigen-binding fragment, variant, or derivative thereof, by itself
or in combination with other active agents) in the required amount
in an appropriate solvent with one or a combination of ingredients
enumerated herein, as required, followed by filtered sterilization.
Generally, dispersions are prepared by incorporating the active
compound into a sterile vehicle, which contains a basic dispersion
medium and the required other ingredients from those enumerated
above. In the case of sterile powders for the preparation of
sterile injectable solutions, the preferred methods of preparation
are vacuum drying and freeze-drying, which yields a powder of an
active ingredient plus any additional desired ingredient from a
previously sterile-filtered solution thereof. The preparations for
injections are processed, filled into containers such as ampoules,
bags, bottles, syringes or vials, and sealed under aseptic
conditions according to methods known in the art. Further, the
preparations may be packaged and sold in the form of a kit such as
those described in U.S. patent application Ser. No. 09/259,337.
Such articles of manufacture will preferably have labels or package
inserts indicating that the associated compositions are useful for
treating a subject suffering from, or predisposed to a disease or
disorder.
[0247] Parenteral formulations may be a single bolus dose, an
infusion or a loading bolus dose followed with a maintenance dose.
These compositions may be administered at specific fixed or
variable intervals, e.g., once a day, or on an "as needed"
basis.
[0248] Certain pharmaceutical compositions used in this invention
may be orally administered in an acceptable dosage form including,
e.g., capsules, tablets, aqueous suspensions or solutions. Certain
pharmaceutical compositions also may be administered by nasal
aerosol or inhalation. Such compositions may be prepared as
solutions in saline, employing benzyl alcohol or other suitable
preservatives, absorption promoters to enhance bioavailability,
and/or other conventional solubilizing or dispersing agents.
[0249] The amount of an anti-CXCL13 binding molecule, e.g.,
antibody, or fragment, variant, or derivative thereof, that may be
combined with the carrier materials to produce a single dosage form
will vary depending upon the host treated and the particular mode
of administration. The composition may be administered as a single
dose, multiple doses or over an established period of time in an
infusion. Dosage regimens also may be adjusted to provide the
optimum desired response (e.g., a therapeutic or prophylactic
response).
[0250] In keeping with the scope of the present disclosure,
anti-CXCL13 antibodies, or antigen-binding fragments, variants, or
derivatives thereof of the invention may be administered to a human
or other animal in accordance with the aforementioned methods of
treatment in an amount sufficient to produce a therapeutic effect.
The anti-CXCL13 antibodies, or antigen-binding fragments, variants,
or derivatives thereof of the invention can be administered to such
human or other animal in a conventional dosage form prepared by
combining an antibody of the invention, e.g., MAb 5261, with a
conventional pharmaceutically acceptable carrier or diluent
according to known techniques. It will be recognized by one of
skill in the art that the form and character of the
pharmaceutically acceptable carrier or diluent is dictated by the
amount of active ingredient with which it is to be combined, the
route of administration and other well-known variables. Those
skilled in the art will further appreciate that a cocktail
comprising one or more species of anti-CXCL13 binding molecules,
e.g., antibodies, or antigen-binding fragments, variants, or
derivatives thereof, of the invention may prove to be particularly
effective.
[0251] By "therapeutically effective dose or amount" or "effective
amount" is intended an amount of anti-CXCL13 binding molecule,
e.g., antibody or antigen binding fragment thereof, that when
administered brings about a positive therapeutic response with
respect to treatment of a patient with a disease to be treated.
[0252] Therapeutically effective doses of the compositions of the
present invention, for treatment of CXCL13-expressing cell-mediated
diseases such as certain types of cancers, e.g., leukemia, lymphoma
(e.g., MALT lymphoma), colon, breast, esophageal, stomach, and
prostate cancer; autoimmune diseases, e.g., lupus, arthritis,
multiple sclerosis, and inflammatory diseases including central
nervous system (CNS) and peripheral nervous system (PNS)
inflammatory diseases, vary depending upon many different factors,
including means of administration, target site, physiological state
of the patient, whether the patient is human or an animal, other
medications administered, and whether treatment is prophylactic or
therapeutic. Usually, the patient is a human, but non-human mammals
including transgenic mammals can also be treated. Treatment dosages
may be titrated using routine methods known to those of skill in
the art to optimize safety and efficacy.
[0253] The amount of at least one anti-CXCL13 binding molecule,
e.g., antibody or binding fragment thereof, to be administered is
readily determined by one of ordinary skill in the art without
undue experimentation given the disclosure of the present
invention. Factors influencing the mode of administration and the
respective amount of at least one anti-CXCL13 binding molecule,
e.g., antibody, antigen-binding fragment, variant or derivative
thereof include, but are not limited to, the severity of the
disease, the history of the disease, and the age, height, weight,
health, and physical condition of the individual undergoing
therapy. Similarly, the amount of anti-CXCL13 binding molecule,
e.g., antibody, or fragment, variant, or derivative thereof, to be
administered will be dependent upon the mode of administration and
whether the subject will undergo a single dose or multiple doses of
this agent.
[0254] The present invention also provides for the use of an
anti-CXCL13 binding molecule, e.g., an antibody or antigen-binding
fragment, variant, or derivative thereof, in the manufacture of a
medicament for treating an autoimmune disease and/or inflammatory
disease, including, e.g., MS, arthritis, lupus, gastritis, an
ulcer, or a cancer.
IX. Diagnostics
[0255] The invention further provides a diagnostic method useful
during diagnosis of CXCL13-expressing cell-mediated diseases such
as certain types of cancers and inflammatory diseases including
autoimmune diseases, which involves measuring the expression level
of CXCL13 protein or transcript in tissue or other cells or body
fluid from an individual and comparing the measured expression
level with a standard CXCL13 expression level in normal tissue or
body fluid, whereby an increase in the expression level compared to
the standard is indicative of a disorder. In certain embodiments,
the anti-CXCL13 antibodies of the invention or antigen-binding
fragments, variants, and derivatives thereof, e.g., MAb MAb 5261,
MAb 5378, MAb 5080, MAb 1476, 3D2, or 3C9, are used in diagnosis of
cancer, multiple sclerosis, arthritis, or lupus.
[0256] The anti-CXCL13 antibodies of the invention and
antigen-binding fragments, variants, and derivatives thereof, can
be used to assay CXCL13 protein levels in a biological sample using
classical immunohistological methods known to those of skill in the
art (e.g., see Jalkanen, et al., J. Cell. Biol. 101:976-985 (1985);
Jalkanen et al., J. Cell Biol. 105:3087-3096 (1987)). Other
antibody-based methods useful for detecting CXCL13 protein
expression include immunoassays, such as the enzyme linked
immunosorbent assay (ELISA), immunoprecipitation, or Western
blotting. Suitable assays are described in more detail elsewhere
herein.
[0257] By "assaying the expression level of CXCL13 polypeptide" is
intended qualitatively or quantitatively measuring or estimating
the level of CXCL 13 polypeptide in a first biological sample
either directly (e.g., by determining or estimating absolute
protein level) or relatively (e.g., by comparing to the disease
associated polypeptide level in a second biological sample). In one
embodiment, the CXCL13 polypeptide expression level in the first
biological sample is measured or estimated and compared to a
standard CXCL13 polypeptide level, the standard being taken from a
second biological sample obtained from an individual not having the
disorder or being determined by averaging levels from a population
of individuals not having the disorder. As will be appreciated in
the art, once the "standard" CXCL13 polypeptide level is known, it
can be used repeatedly as a standard for comparison.
[0258] By "biological sample" is intended any biological sample
obtained from an individual, cell line, tissue culture, or other
source of cells potentially expressing CXCL13. Methods for
obtaining tissue biopsies and body fluids from mammals are well
known in the art.
X. Immunoassays
[0259] Anti-CXCL13 antibodies, or antigen-binding fragments,
variants, or derivatives thereof of the invention may be assayed
for immunospecific binding by any method known in the art. The
immunoassays that can be used include but are not limited to
competitive and non-competitive assay systems using techniques such
as Western blots, radioimmunoassays, ELISA (enzyme linked
immunosorbent assay), "sandwich" immunoassays, immunoprecipitation
assays, precipitin reactions, gel diffusion precipitin reactions,
immunodiffusion assays, agglutination assays, complement-fixation
assays, immunoradiometric assays, fluorescent immunoassays, protein
A immunoassays, to name but a few. Such assays are routine and well
known in the art (see, e.g., Ausubel et al., eds, (1994) Current
Protocols in Molecular Biology (John Wiley & Sons, Inc., NY)
Vol. 1, which is incorporated by reference herein in its
entirety).
[0260] The binding affinity of an antibody to an antigen and the
off-rate of an antibody-antigen interaction can be determined by
competitive binding assays. One example of a competitive binding
assay is a radioimmunoassay comprising the incubation of labeled
antigen (e.g., .sup.3H or .sup.125I) with the antibody of interest
in the presence of increasing amounts of unlabeled antigen, and the
detection of the antibody bound to the labeled antigen. The
affinity of the antibody of interest for a particular antigen and
the binding off-rates can be determined from the data by scatchard
plot analysis. Competition with a second antibody can also be
determined using radioimmunoassays. In this case, the antigen is
incubated with antibody of interest is conjugated to a labeled
compound (e.g., .sup.3H or .sup.125I) in the presence of increasing
amounts of an unlabeled second antibody.
[0261] The binding activity of a given lot of anti-CXCL 13
antibody, or antigen-binding fragment, variant, or derivative
thereof may be determined according to well known methods. Those
skilled in the art will be able to determine operative and optimal
assay conditions for each determination by employing routine
experimentation.
[0262] There are a variety of methods available for measuring the
affinity of an antibody-antigen interaction, but relatively few for
determining rate constants. Most of the methods rely on either
labeling antibody or antigen, which inevitably complicates routine
measurements and introduces uncertainties in the measured
quantities.
[0263] Surface plasmon reasonance (SPR) as performed on
BIACORE.RTM. offers a number of advantages over conventional
methods of measuring the affinity of antibody-antigen interactions:
(i) no requirement to label either antibody or antigen; (ii)
antibodies do not need to be purified in advance, cell culture
supernatant can be used directly; (iii) real-time measurements,
allowing rapid semi-quantitative comparison of different monoclonal
antibody interactions, are enabled and are sufficient for many
evaluation purposes; (iv) biospecific surface can be regenerated so
that a series of different monoclonal antibodies can easily be
compared under identical conditions; (v) analytical procedures are
fully automated, and extensive series of measurements can be
performed without user intervention. BIAapplications Handbook,
version AB (reprinted 1998), BIACORE.RTM. code No. BR-1001-86;
BIAtechnology Handbook, version AB (reprinted 1998), BIACORE.RTM.
code No. BR-1001-84. SPR based binding studies require that one
member of a binding pair be immobilized on a sensor surface. The
binding partner immobilized is referred to as the ligand. The
binding partner in solution is referred to as the analyte. In some
cases, the ligand is attached indirectly to the surface through
binding to another immobilized molecule, which is referred as the
capturing molecule. SPR response reflects a change in mass
concentration at the detector surface as analytes bind or
dissociate.
[0264] Based on SPR, real-time BIACORE.RTM. measurements monitor
interactions directly as they happen. The technique is well suited
to determination of kinetic parameters. Comparative affinity
ranking is simple to perform, and both kinetic and affinity
constants can be derived from the sensorgram data.
[0265] When analyte is injected in a discrete pulse across a ligand
surface, the resulting sensorgram can be divided into three
essential phases: (i) Association of analyte with ligand during
sample injection; (ii) Equilibrium or steady state during sample
injection, where the rate of analyte binding is balanced by
dissociation from the complex; (iii) Dissociation of analyte from
the surface during buffer flow.
[0266] The association and dissociation phases provide information
on the kinetics of analyte-ligand interaction (k.sub.a and k.sub.d,
the rates of complex formation and dissociation,
k.sub.d/k.sub.a=K.sub.D). The equilibrium phase provides
information on the affinity of the analyte-ligand interaction
(K.sub.D).
[0267] BIAevaluation software provides comprehensive facilities for
curve fitting using both numerical integration and global fitting
algorithms. With suitable analysis of the data, separate rate and
affinity constants for interaction can be obtained from simple
BIACORE.RTM. investigations. The range of affinities measurable by
this technique is very broad ranging from mM to pM.
[0268] Epitope specificity is an important characteristic of a
monoclonal antibody.
[0269] Epitope mapping with BIACORE.RTM., in contrast to
conventional techniques using radioimmunoassay, ELISA or other
surface adsorption methods, does not require labeling or purified
antibodies, and allows multi-site specificity tests using a
sequence of several monoclonal antibodies. Additionally, large
numbers of analyses can be processed automatically.
[0270] Pair-wise binding experiments test the ability of two MAbs
to bind simultaneously to the same antigen. MAbs directed against
separate epitopes will bind independently, whereas MAbs directed
against identical or closely related epitopes will interfere with
each other's binding. These binding experiments with BIACORE.RTM.
are straightforward to carry out.
[0271] For example, one can use a capture molecule to bind the
first Mab, followed by addition of antigen and second MAb
sequentially. The sensorgrams will reveal: (1) how much of the
antigen binds to first Mab, (2) to what extent the second MAb binds
to the surface-attached antigen, (3) if the second MAb does not
bind, whether reversing the order of the pair-wise test alters the
results.
[0272] Peptide inhibition is another technique used for epitope
mapping. This method can complement pair-wise antibody binding
studies, and can relate functional epitopes to structural features
when the primary sequence of the antigen is known. Peptides or
antigen fragments are tested for inhibition of binding of different
MAbs to immobilized antigen. Peptides which interfere with binding
of a given MAb are assumed to be structurally related to the
epitope defined by that MAb.
[0273] The practice of the present invention will employ, unless
otherwise indicated, conventional techniques of cell biology, cell
culture, molecular biology, transgenic biology, microbiology,
recombinant DNA, and immunology, which are within the skill of the
art. Such techniques are explained fully in the literature. See,
for example, Sambrook et al., ed. (1989) Molecular Cloning A
Laboratory Manual (2nd ed.; Cold Spring Harbor Laboratory Press);
Sambrook et al., ed. (1992) Molecular Cloning: A Laboratory Manual,
(Cold Springs Harbor Laboratory, NY); D. N. Glover ed., (1985) DNA
Cloning, Volumes I and II; Gait, ed. (1984) Oligonucleotide
Synthesis; Mullis et al. U.S. Pat. No. 4,683,195; Hames and
Higgins, eds. (1984) Nucleic Acid Hybridization; Hames and Higgins,
eds.
[0274] (1984) Transcription And Translation; Freshney (1987)
Culture Of Animal Cells (Alan R. Liss, Inc.); Immobilized Cells And
Enzymes (IRL Press) (1986); Perbal (1984) A Practical Guide To
Molecular Cloning; the treatise, Methods In Enzymology (Academic
Press, Inc., N.Y.); Miller and Calos eds. (1987) Gene Transfer
Vectors For Mammalian Cells, (Cold Spring Harbor Laboratory); Wu et
al., eds., Methods In Enzymology, Vols. 154 and 155; Mayer and
Walker, eds. (1987) Immunochemical Methods In Cell And Molecular
Biology (Academic Press, London); Weir and Blackwell, eds., (1986)
Handbook Of Experimental Immunology, Volumes I-IV; Manipulating the
Mouse Embryo, Cold Spring Harbor Laboratory Press, Cold Spring
Harbor, N.Y., (1986); and in Ausubel et al. (1989) Current
Protocols in Molecular Biology (John Wiley and Sons, Baltimore,
Md.).
[0275] General principles of antibody engineering are set forth in
Borrebaeck, ed. (1995) Antibody Engineering (2nd ed.; Oxford Univ.
Press). General principles of protein engineering are set forth in
Rickwood et al., eds. (1995) Protein Engineering, A Practical
Approach (IRL Press at Oxford Univ. Press, Oxford, Eng.). General
principles of antibodies and antibody-hapten binding are set forth
in: Nisonoff (1984) Molecular Immunology (2nd ed.; Sinauer
Associates, Sunderland, Mass.); and Steward (1984) Antibodies,
Their Structure and Function (Chapman and Hall, New York, N.Y.).
Additionally, standard methods in immunology known in the art and
not specifically described are generally followed as in Current
Protocols in Immunology, John Wiley & Sons, New York; Stites et
al., eds. (1994) Basic and Clinical Immunology (8th ed; Appleton
& Lange, Norwalk, Conn.) and Mishell and Shiigi (eds) (1980)
Selected Methods in Cellular Immunology (W.H. Freeman and Co.,
NY).
[0276] Standard reference works setting forth general principles of
immunology include Current Protocols in Immunology, John Wiley
& Sons, New York; Klein (1982) J., Immunology: The Science of
Self-Nonself Discrimination (John Wiley & Sons, NY); Kennett et
al., eds. (1980) Monoclonal Antibodies, Hybridoma: A New Dimension
in Biological Analyses (Plenum Press, NY); Campbell (1984)
"Monoclonal Antibody Technology" in Laboratory Techniques in
Biochemistry and Molecular Biology, ed. Burden et al., (Elsevere,
Amsterdam); Goldsby et al., eds. (2000) Kuby Immunnology (4th ed.;
H. Freemand & Co.); Roitt et al. (2001) Immunology (6th ed.;
London: Mosby); Abbas et al. (2005) Cellular and Molecular
Immunology (5th ed.; Elsevier Health Sciences Division); Kontermann
and Dubel (2001) Antibody Engineering (Springer Verlan); Sambrook
and Russell (2001) Molecular Cloning: A Laboratory Manual (Cold
Spring Harbor Press); Lewin (2003) Genes VIII (Prentice Hall2003);
Harlow and Lane (1988) Antibodies: A Laboratory Manual (Cold Spring
Harbor Press); Dieffenbach and Dveksler (2003) PCR Primer (Cold
Spring Harbor Press).
[0277] All of the references cited above, as well as all references
cited herein, are incorporated herein by reference in their
entireties.
[0278] The following examples are offered by way of illustration
and not by way of
EXAMPLES
Example 1
Selection and Characterization of Mouse Antibodies Specific for
Human CXCL13
[0279] Hybridoma generation. Swiss Webster mice were immunized with
Keyhole limpet hemocyanin (KLH)-conjugated human CXCL13. After
three immunizations, spleen was harvested from the mouse with the
highest anti-CXCL13 titer and hybridomas were generated by fusion
of spleen cells with SP2/0 myeloma cells using standard
procedures.
[0280] Hybridoma clones were screened by ELISA for binding to human
and mouse CXCL13 protein. ELISA plates were coated with about 100
nM of human (Peprotech: #300-47) or mouse (Peprotech: #250-24)
CXCL13 protien overnight at room temperature (RT). After the plates
were washed and blocked, dilutions of standard anti-CXCL13
antibodies (R&D Systems: rat anti-mouse MAb 470 and mouse
anti-human MAb 801) or hybridoma supernatant were added and
incubated for 1 hour at RT. The plates were washed and secondary
antibodies (goat anti-mouse IgG-HRP for hybridoma supernatant and
MAb 801; donkey anti-rat IgG-HRP for MAb 470) were added and
incubated for 1 hour at RT. The plates were washed and developed
with tetramethylbenzidine (TMB) substrate reagents A and B (BD
Biosciences: #555214) mixed at equal volumes for 15 minutes in the
dark and read at 450/570 wavelengths. Two positive hybridoma
clones, labelled "3D2" and "3C9", both mouse IgG1 antibodies, were
selected for further characterization.
[0281] Specificity of the hybridoma-produced mouse anti-human
antibodies, 3D2 and 3C9, was assessed by ELISA (as described above)
on a panel that included recombinant chemokines (Peprotech: mouse
and human CXCL13, human IL-8/CXCL8 (#200-08), human IP-10/CXCL10
(#200-10), human MIG/CXCL9 (#300-26), human SDF-1alpha/CXCL12
(#300-28A) and cynomolgus monkey CXCL13) as well as several
non-specific control antigens (recombinant human C35, streptavidin
(Thermo: #21122), bovine serum albumin (BSA) (SeraCore:
#AP-4510-01)), human serum albumin (HAS) (Sigma: #A8763), insulin
(Gibco: #12585-014), and hemoglobin (Sigma: #117379). Commercial
antibodies MAb 470 and MAb 801 (R&D Systems) were used as
positive controls for mouse and human/cynomolgus monkey CXCL13
binding, respectively.
[0282] 3D2 and 3C9 were shown to specifically bind CXCL13. Both 3D2
and 3C9 clones demonstrated multi-species CXCL13 specificity as
they bound to recombinant human, mouse and cynomolgus monkey CXCL13
(FIGS. 1A-1C). FIG. 1 shows results from duplicate measurements for
at least three experiments. 3D2 antibody was shown to have strong
binding to recombinant human, mouse and monkey CXCL 13. In
particular, 3D2 had stronger binding to recombinant mouse CXCL13
compared to 3C9 and MAb 801. 3D2 was further characterized in vitro
and in vivo (results shown below). The 3D2 antibody was also used
as a prototype for generation of a chimeric and humanized CXCL13
antibodies (results shown below). 3C9 antibody was shown to have
the strongest binding to recombinant human CXCL13 compared to 3D2,
MAb 470, and MAb 801. 3C9 and 3D2 were used as reagents in Bioassay
development (e.g., Epitope Competition ELISA, described below).
[0283] 3D2 affinity measurements by BIACORE.RTM.. The affinity of
3D2, 3C9, MAb 801 and MAb 470 for recombinant human and mouse
CXCL13 was measured by BIACORE.RTM.. Chemokines were immobilized on
a C1 chip in Acetate buffer (pH=5) with human CXCL13 at 1 .mu.g/ml,
mouse CXCL13 at 0.3 .mu.g/ml, and negative control SDF-1.alpha. at
0.5 .mu.g/ml. 3D2 and 3C9 were diluted in HBS-EP buffer by two-fold
from 100 nM to 0.78 nM and from 38 nM to 0.594 nm. MAb 801 and MAB
470 were diluted by two-fold from 50 nM to 0.78 nM and from 19 nM
to 0.594 am. The results showed that the affinity measurement (nM)
for 3D2 on human and mouse CXCL13 was significantly lower than that
of commercial antibodies MAb 801 and MAb 470, respectively. The
results are shown in Table 2.
TABLE-US-00002 TABLE 2 Affinity Measurements.sup.1 Affinity, nM
Antibody Fc Human CXCL13 Mouse CXCL13 3D2 Mouse IgG1 12.9 159.3 3C9
Mouse IgG1 2.5 NB MAb 801 Mouse IgG1 1.3 NB MAb 470 Rat IgG2a NB
5.4 .sup.1affinities are for recombinant human and mouse CXCL13; NB
= no binding
[0284] 3D2 epitope mapping. An epitope mapping study was conducted
using Epitope Competition ELISA. Plates were coated with 100 nM
recombinant human CXCL13 and incubated with 0.033 nM biotinylated
3D2 prior to addition of competing unlabeled antibodies at various
concentrations in excess of the amount of 3D2. The results from a
representative experiment are shown in FIG. 2. The results show
that 3C9 competes with 3D2 for binding to human CXCL13, but MAb 801
did not compete with 3D2 for binding to human CXCL13.
[0285] 3D2 binding to native CXCL13. Capture Epitope Competition
ELISA was used to assess 3D2 binding to native human and mouse
CXCL13. In this assay, native human CXCL13 was obtained from
supernatants collected from human IFN-gamma-stimulated THP-1 cells.
Human CXCL13 (1:4 dilution of THP1 supernatant or 0.097 nM (1
ng/ml) rhuCXCL13) was captured with 6.6 nM MAb 801 and detected
with 0.66 mM biotin-3C9. For appropriate antigen presentation, the
chemokine from tissue culture supernatant (or recombinant human
CXCL 13 which was used as a control) was captured on the ELISA
plate by MAb 801. The plate was then incubated with biotinylated
3C9 in the presence of various amounts of unlabeled 3D2. The
competition for binding to human CXCL13 that resulted in reduced
binding of biotinylated 3C9 was detected by Streptavidin-HRP. As
evident from FIG. 3A, 3D2 strongly bound to both native and
recombinant human CXCL13 producing statistically similar EC50
values.
[0286] Mouse CXCL13-rich organ extracts from TNF-alpha transgenic
mice were used as sources of native mouse CXCL13. Mouse CXCL13
(1:40 dilution of TNF-Tg organ extract or 0.5 nM rmuCXCL13) was
captured with 33 nM MAb 470 and detected with 3.3 nM biotin-3D2.
The chemokine from the extracts (and recombinant mouse CXCL13 which
was used as a control) was captured on the ELISA plate by MAb 470.
The plate was then incubated with biotinylated 3D2 in the presence
of various amounts of unlabeled 3D2. The competition for the
binding to mouse CXCL13 that resulted in reduced binding of
biotinylated 3D2 was then detected by Streptavidin-HRP. As can be
seen from FIG. 3B, 3D2 was able to compete off the biotinylated
version of itself and bind to both native and recombinant mouse
CXCL13 with equal potency.
[0287] For both FIGS. 3A and 3B, each data point represents an
average of duplicate measurements from one of at least three
independent experiments. Curves were fitted using four-parameter
sigmoidal curve fit (R.sup.2=0.99). Differences in EC50 values were
analyzed by unpaired t-test and were not significant (P>0.05).
These results show that the mouse anti-human 3D2 antibody bound not
only the recombinant chemokine against which it had been generated,
but also native human and mouse chemokines.
Example 2
Anti-CXCL13 Antibody Inhibition of Human B-Cell Migration
[0288] Inhibition of CXCL13 function, e.g., B-cell migration, was
evaluated using established models that simulate B-cell migration
in both human and mouse systems. Migration towards a non-CXCL13
chemokine, SDF-1.alpha. (a.k.a. CXCL12), was used as a control to
confirm specificity of anti-CXCL13 antibody on inhibition of B-cell
migration. Thus, anti-CXCL13 antibodies were tested for inhibition
of human CXCL13-induced migration and the absence of an effect on
SDF-1a-induced migration.
[0289] Inhibition of human B-cell migration towards human CXCL13.
The effect of 3D2, 3C9, and MAb 801 on human CXCL13-induced B-cell
migration was tested.
[0290] Two clonal cell lines, human pre-B-697-hCXCR5 and human
pre-B-697-hCXCR4, were used to assess the effects of anti-CXCL13
antibodies on recombinant human CXCL13-dependent migration and
recombinant human SDF-1.alpha.-dependent migration, respectively.
Transwell tissue culture-treated plates with 8 .mu.m pore size and
diameter of 6.5 mm (Corning Costar: 3422) were used. Human
pre-B-697-hCXCR5 cells were used for rhCXCL13-induced migration,
and human pre-B-697-hCXCR4 for were used for rhSDF-1-induced
migration (negative control). Cells were resuspended in chemotaxis
buffer ((RPMI 1640 with 1-glutamine, 10 mM HEPES, PennStrep and
0.5% BSA) pre-warmed to RT) at 5.times.10.sup.6/ml and returned to
37.degree. C. for 30 minutes. Diluted chemokine (97 nm (1 .mu.g/ml)
rhCXCL13 or 12.5 nM (0.1 .mu.g/ml) rhSDF-1.alpha. in chemotaxis
buffer)+/-antibodies were added into the lower chamber at 590
.mu.l/well and pre-incubated for 30 minutes at RT. The cells were
added at 100 .mu.l (5.times.10.sup.5) cells/upper chamber. Plates
were incubated overnight at 37.degree. C. Inserts were then removed
and Alamar blue was added at 60 .mu.l per well and the plates were
incubated at 37.degree. C. for 4 hours. Fluorescence was measured
at wavelengths 530 nm and 590 nm.
[0291] Migration index was calculated for each condition as
follows: ((Migration Index [Isotype control]-Migration Index
[antibody])*100)/(Migration Index [Isotype control]). Percent
migration inhibition was plotted against log [nM antibody] to
obtain a titration curve using Graphpad Prism 5. The results for
human CXCL13-induced migration are shown in FIG. 4A. The results
are presented as mean of two hCXCL13-induced migration and three
hSDF-1-induced migration independent experiments+/-SEM.
[0292] Differences in the degrees of inhibition of human
CXCL13-induced migration among 3D2, 3C9 and MAb 801 corresponded to
the differences in affinities for human CXCL13 (see Table 2 above).
Thus, the antibody with the lowest affinity for the chemokine (3D2)
appeared to be the weakest inhibitor of human pre-B-hCXCR5
chemotaxis, whereas antibodies with higher, nearly identical
affinities (MAb 801 and 3C9) resulted in a high percent inhibition
of cell migration (FIG. 4A). None of the anti-human CXCL13
antibodies (3D2, 3C9, or MAb 801) produced any effect on human
SDF-1.alpha.-mediated chemotaxis of human pre-B-hCXCR4 (5) cells
(FIG. 4B). Whereas, positive control goat anti-human SDF-1.alpha.
antibody (MAb 87A) strongly inhibited SDF-1.alpha.-dependent
migration.
[0293] Inhibition of mouse CXCL13-dependent migration of mouse
splenocytes. Anti-CXCL13 antibodies were tested for their ability
to inhibit recombinant mouse CXCL13-mediated chemotaxis of mouse
spleenocytes (obtained from mechanically dissociated spleens). The
assay was performed using essentially the same protocol as
described above for the human CXCL13-dependent B-cell migration
assay with minor changes including using 485 nM (5 .mu.g/ml)
rmuCXCL13, using transwell plates with smaller pore size (i.e.,
Transwell tissue culture treated plates with 5 .mu.m pore size and
diameter of 6.5 mm (Corning Costar: #3421)), and using higher
amounts of cells (10.sup.6) per well. The effect of the tested
antibodies on migration of spleenocytes from two different strains
of mice, C57/BL6 and SJL are shown in FIGS. 5A and 5B,
respectively. MAb 470 was used as a positive control. Rat and mouse
IgG as well as human CXCL13-specific mouse antibody 3C9 were
included as a negative controls. As shown in FIGS. 5A and 5B, the
patterns of inhibition were different between MAb 470 and 3D2. In
particular, 3D2 inhibited chemotaxis in a titratable manner,
whereas, the effect of MAb 470 was only apparent at the highest
antibody concentration of 396 nM. Data comparing the effect of 3D2
on C57Black/6 and SJL/J migration were analyzed by unpaired t-test
which produced P value>0.05 indicating an absence of significant
differences between two curves. Curves were fitted using
four-parameter sigmoidal curve fit (R.sup.2=0.99). A comparison of
3D2 effect on SJL/J and C57Black/6 splenocyte migration is shown in
FIG. 5C. No significant differences in 3D2 inhibitory profiles
between two mouse strains was shown.
Example 3
Anti-CXCL13 Antibody Inhibition of CXCL13-Mediated Endocytosis of
Human CXCR5
[0294] Inhibition of CXCL13 chemokine function, e.g.,
CXCL13-mediated endocytosis of CXCR5 receptor, with anti-CXCL13
antibodies was evaluated using an established model for human
CXCL13-mediated endocytosis of human CXCR5 receptor (Burke et al.,
Blood 110:2216-3325 (2007)).
[0295] Inhibition of CXCL13-mediated endocytosis of human CXCR5
receptor. Binding of a chemokine to its chemokine receptor leads to
internalization of the ligand-receptor complex with subsequent
activation of intracellular signaling cascade (Neel et al.,
Chemokine and Growth Factor Reviews 16:637-658 (2005)). The
flow-based method described in Burkle et al. was adapted to
determine the ability of 3D2 to inhibit CXCL13-mediated CXCR5
receptor internalization in both human and mouse cells. For the
human CXCL13-mediated endocytosis, hCXCL13 was combined with 3D2,
MAb 470 or Mouse IgG (at concentrations 0, 33, 66, 132, 264, and
528 nM) and incubated overnight at 4.degree. C. The next day, the
cells were resuspended in diluents (RPMI+0.5% BSA) at 10.sup.7
cells/ml. The cells were pre-blocked with 10 .mu.g/ml anti-human Fc
block for 15 min at 37.degree. C. The cells were then incubated
with the CXCL13/antibody mix (50 .mu.l cells:50 .mu.l mix) for 2
hours at 37.degree. C. The cells were then stained with anti-human
CXCR5 antibody (BDPharmingen: #558113) for 30 minutes at 4.degree.
C. and analyzed by flow cytometry. Similarly, mouse CXCL13-mediated
endocytosis was assayed using mCXCL13 combined with 3D2 or Mouse
IgG (at concentrations 0, 20, 59, 198, and 528 nM). Inhibition of
endocytosis was calculated as follows: % Inhibition=100-[100*(0
CXCL13-geomean)/(0 CXCL13-0 mAB)].
[0296] FIG. 6 shows data from representative human and mouse CXCL13
experiments. FIG. 6A shows the effect of 3D2 antibody on human
CXCR5 receptor expression on the surface of human pre-B-697-hCXCR5
cells treated with 485 nM (5 .mu.g/ml) of human CXCL13. FIG. 6B
shows 3D2-mediated inhibition of mouse CXCR5 receptor
internalization in Wehi-231 cells pre-incubated with 1000 nM (10
.mu.g/ml) of mouse CXCL13. In both cases 3D2 efficiently and in a
titratable manner interfered with the CXCL13-induced down
regulation of CXCR5 receptors. FIG. 6C shows EC50 values which were
calculated from sigmoidal dose response curves (shown on the graph)
with R2 values equal to 1 (mouse endocytosis) and 0.994 (human
endocytosis). The data comparing 3D2 effect on human and mouse
receptor endocytosis were analyzed by unpaired t-test which
produced a P value>0.05 indicating absence of significant
differences between the human CXCL13 and mouse CXCL13 curves.
Example 4
Evaluation of Anti-CXCL13 Antibodies in Mouse Disease Models for
Multiple Sclerosis
[0297] Murine model of Multiple Sclerosis. Experimental Autoimmune
Encephalomyelitis (EAE) is a widely accepted animal model of
multiple sclerosis. EAE is a demyelinating disease of the CNS that
progressively results in escalating degrees of ascending paralysis
with inflammation primarily targeting the spinal cord. The disease
can assume an acute, chronic or relapsing-remitting course that is
dependent upon the method of induction and type of animal used.
Thus, EAE can be induced with the components of the CNS, peptides
(active induction) and also via cell transfer from one animal to
another (passive induction). Complete Freund's Adjuvant (CFA) is
used with the extracts or peptides and is often used with pertussis
toxin.
[0298] RR-EAE-1: 3D2 effect on relapsing-remitting EAE in SJL mice.
3D2 antibody was tested using an active immunization model of EAE.
In the "RR-EAE-1" study, relapsing-remitting (RR) disease was
induced in SJL/J mice by subcutaneous immunization with proteolipid
protein (PLP).sub.139-151 peptide epitope (HSLGKWLGHPDKF; SEQ ID
NO: 1) in 1 mg/ml CFA enhanced with 5 mg of heat-inactivated
Mycobacterium tuberculosis strain H37RA. The study included the
following treatment groups:
[0299] A. Control (mouse IgG) starting at Day 0
[0300] B. 3D2 starting at Day 0
[0301] C. 3D2 starting at score.gtoreq.1
[0302] The mice were given intraperitoneal injections of 0.3 mg (15
mg/kg) of antibody twice per week. The treatment started at Day 0
for groups A and B and at the clinical score of .gtoreq.1 for group
C (the scoring system is described in Table 3 below).
TABLE-US-00003 TABLE 3 Summary of Evaluation of the EAE Clinical
Signs Score Signs Description 0 Normal behavior No neurological
signs. 1 Distal limp tail The distal part of the tail is limp and
droopy. 1.5 Complete limp tail The whole tail is loose and droopy.
2 Righting reflex Animal has difficulties rolling onto his feet
when laid on its back. 3 Ataxia Wobbly walk - when the mouse walks
the hind legs are unsteady. 4 Early paralysis The mouse has
difficulties standing on its hind legs, but still has remnants of
movement. 5 Full paralysis The mouse can't move its legs at all, it
looks thinner and emaciated. 6 Moribund/Death
[0303] As shown in FIG. 7, treatment with 3D2 resulted in an
amelioration of disease. Each data point represents a mean of
scores taken from 9 mice. Group means (GMS) were compared by using
one-way ANOVA followed by Bonferroni's multiple comparison post
test. Statistically significant differences were observed between
the control group (mouse IgG) and each 3D2 treated group
(P<0.05), but not between two 3D2 treated groups (P>0.05).
The disease attenuation was observed even when treatment did not
begin until mice had demonstrated active disease (Group C).
[0304] RR-EAE-2: 3D2 effect on relapsing-remitting EAE in SJL mice.
A second study ("RR-EAE-2") was done using pertussis toxin in the
induction protocol to test 3D2 in a more severe disease model. For
this second relapsing-remitting EAE study, SJL/J mice were
subcutaneously immunized with PLP.sub.139-151 in 1 mg/ml CFA
enhanced with 5 mg of heat-inactivated Mycobacterium tuberculosis
strain H37RA, and one-hundred nanograms of Pertussis toxin was
administered intraperitonealy on Days 0 and 2 post-immunization.
Treatment included bi-weekly intraperitoneal injections of 0.3 mg
(15 mg/kg) antibody separated into the following groups:
[0305] A. Control (mouse IgG) starting at Day 0
[0306] B. 3D2 starting at Day 0
[0307] C. 3D2 starting at Day 7
[0308] D. 3D2 starting at EAE onset (score.gtoreq.2)
[0309] The results for RR-EAE-2 are shown in FIG. 8. Each data
point represents a mean of scores taken from 9 mice. Group means
were compared by using one-way ANOVA followed by Bonferroni's
multiple comparison post test. Statistically significant
differences were observed between control (mouse IgG) and each 3D2
treated group (P<0.05), but not among the three 3D2 treated
groups (P>0.05). Again, treatment with 3D2 had a statistically
significant effect on the severity of the disease, even when the
treatment was started at the onset of the EAE symptoms,
score.gtoreq.2 (Group D).
Example 5
Evaluation of Anti-CXCL 13 Antibodies in Mouse Disease Model for
Lupus
[0310] Murine model of Systemic Lupus Erythematosus (SLE). SLE is
an autoimmune disease that involves multiple organs and is
characterized by the spontaneous formation of ectopic germinal
centers and autoantibody production against a number of nuclear
antigens. The effect of anti-CXCL13 3D2 antibody was tested in a
murine model of lupus. Lupus-prone New Zealand Black X New Zealand
White F1 (NZB/NZWF 1) mice spontaneously develop high-titer
anti-dsDNA antibodies and severe proliferative glomerulonephritis
caused by formation of immune complexes in glomeruli of the
kidneys.
[0311] SLE-1: Treatment of advanced disease. In study "SLE-1,"
treatment started in twenty-four to thirty-week old NZB/NZWF1 mice
with proteinuria of .gtoreq.2 (proteinuria scoring system is
described in Table 4 below) and the treatment was continued for
eight weeks. The treatment included bi-weekly intraperitoneal
injections of 0.3 mg (15 mg/kg) of 3D2 or mouse IgG (control).
TABLE-US-00004 TABLE 4 Proteinuria Scores Proteinuria score
[Protein] in urine, mg/dl 1+ 30 2+ 100 3+ 300
[0312] As shown in FIG. 9A, treatment with 3D2 halted progression
of proteinuria. Histological analysis of kidneys using a
well-defined scoring system (Table 5) also showed a beneficial
effect of anti-CXCL13 treatment as the glomerulonephritis (GN),
interstitial nephritis (IN), and vasculitis (VI) pathology scores
were lower in the 3D2-treated group compared to control (mouse
IgG). See FIG. 9B.
TABLE-US-00005 TABLE 5 Kidney Pathology Scores Scores
Glomerulonephritis Interstitial Nephritis Vessels 0-1+ Focal, mild
or early Occasional, focal Occasional proliferative or small
pockets perivascular of MNC (10-15 infiltrate cells) 1-2+ Moderate
or definite Focal infiltrates Several foci of proliferative; (15-30
cells) perivascular infil- increased matrix trate; no necrosis 2-3+
Diffuse and focal or Multifocal extensive Multifocal peri- diffuse
proliferative infiltrates; vascular; more with necrosis extensive;
+/-ne- crosis (3+) 3-4+ Severe diffuse Severe disease with
Multifocal or dif- proliferative, with extensive necrosis fuse;
extensive with crescent/sclerosis necrosis
[0313] For proteinurea scores (FIG. 9A) and kidney pathology scores
(FIG. 9B), each data point represented the mean of ten
measurements. No statistically significant differences were
observed (P>0.05) in two-way ANOVA followed by Bonferroni's
multiple comparison post test to identify statistically significant
differences (P<0.05).
[0314] SLE-2: Prevention Trial in Mice with Early Disease
(post-autoantibody induction, but before significant proteinuria).
In study "SLE-2," the treatment started in twenty-week-old
NZB/NZWF1 mice and continued for twelve weeks. The treatment
included bi-weekly intraperitoneal injections of 0.3 mg (15 mg/kg)
of either 3D2 or mouse IgG (control). As shown in FIG. 10A,
treatment with 3D2 resulted in statistically significant inhibition
of the progression of proteinuria, particularly during the first
eight weeks of treatment. After eight weeks, zero out of seven (0%)
mice in the 3D2 treatment group and four out of nine (44%) mice in
the control group had >2+ proteinuria score. At the end of
twelve weeks of treatment, mean urine protein was 2.1+/-0.2 with
3D2 treatment vs. 3.1+/-0.15 with mouse IgG (control) antibody.
[0315] Kidney pathology scores were also measured in mice from the
3D2-treated group and mouse IgG-treated group. A summary of the
glomerulonephritis (GN) and interstitual nephritis (IN) pathology
scores is shown in FIG. 10B.
[0316] Proteinuria levels (FIG. 10A) and kidney pathology scores
(FIG. 10B) were measured in 7 mice from 3D2-treated group and 9
mice from mouse IgG-treated group. Proteinurea scores were
significantly different between groups (P=0.0042; two-way ANOVA
with Bonferroni's multiple comparison test). Kidney pathology
scores were not significantly different (P>0.05). Although, mean
pathology scores were not significantly different, there was
histologic evidence of severe kidney disease in two out of seven
(29%) mice in the 3D2 treatment group, while four out of nine (44%)
mice in the control group showed evidence of severe disease. It was
noted that blockade of CXCL13 by 3D2 did not prevent the
development of autoantibodies (data not shown).
[0317] The effect of 3D2 treatment on the number of Germinal
Centers (GC) and primary follicles in the spleen of lupus mice was
evaluated. Spleen sections were stained with GL-7 (GC stain), B220
antibody (B cell marker), or antibody against follicular dendritic
cells (FDCs) from 3D2-treated and mouse IgG-treated (control)
NZB/NZWF1 mice. The effect of CXCL13 inhibition on splenic lymphoid
architecture is shown in FIGS. 11A-B. The primary follicles
remained intact. Mice treated with 3D2 exhibited a significant
decrease in size and frequency of spontaneous germinal centers (GC)
in the spleen. Mice treated with 3D2 ("tx") showed a trend towards
decreased numbers of GCs when expressed as a ratio of primary:
secondary (GC) follicles (p=0.19) (FIG. 12A) and a significant
decrease in GC size (p=0.03) (FIG. 12B). Values are shown as
mean+/-SEM with 5 mice per group.
[0318] The above described SLE results shows that CXCL13 inhibition
by 3D2 antibody leads to decreased nephritis in the NZB/NZWF 1
mouse model of lupus, particularly at earlier stages of disease,
and may affect splenic architecture.
Example 6
Preparation of Chimeric and Humanized Anti-CXCL13 Monoclonal
Antibodies
[0319] Isolation of 3D2 hybridoma V genes and cloning of chimeric
302 antibody. Mouse 3D2 antibody was used as a prototype for
generation of a chimeric anti-CXCL13 monoclonal antibody. The
variable (V) genes were isolated from a 3D2 hybridoma using
standard methods. The polynucleotide and amino acid sequences of
the heavy chain (H1609) and the light chain (L0293) of 3D2 are
shown in FIG. 13. The VH and VK complementarity determining regions
(CDRs) are underlined (SEQ ID NOs: 4, 5, 6, 9, 10, and 11,
respectively).
[0320] The variable heavy (VH) gene was cloned into a mammalian
expression vector that contained the human gamma 1 heavy chain
gene, creating a full length chimeric heavy chain. The variable
light (VK) gene was cloned into a mammalian expression vector that
had the human Kappa constant gene, creating a full length chimeric
light chain. In order to make the chimeric antibody, the expression
vectors containing the chimeric heavy chain and the chimeric light
chain were co-transfected into CHO-S cells. The monoclonal antibody
(MAb) that was produced was secreted from the cells and harvested
after a 3 to 6 day expression period. The resulting MAb was
purified using Protein A chromatography and characterized. The
resulting chimeric IgG1 antibody ("MAb 1476") was shown to be
specific for human and mouse CXCL13 by ELISA, was shown to have
similar affinity on mouse and human CXCL13, and was shown to have
similar functional activity as the parental mouse antibody, 3D2
(data not shown). Furthermore, MAb 1476 was able to compete with
biotinylated 3D2 and 3C9 for binding on mouse and human CXCL13 in
an Epitope Competition ELISA (data not shown).
[0321] Humanization of chimeric 3D2 (MAb 1476). Humanization of
chimeric 3D2 antibody is summarized below. The modifications that
were introduced to framework regions (FWR) of heavy (H1609) and
light chains (L0293) from the chimeric MAb 1476 are shown in FIGS.
14A and 14B, respectively. A putative N-linked glycosylation site
(Asn-Leu-Thr) in H1609 was replaced with Ser-Leu-Thr (FIG. 14A).
The mutation did not affect antibody affinity (see Table 6) and
resulted in generation of "MAb 5080." In order to improve affinity
and functionality of MAb 5080, a number of variable region mutants
were produced and screened by IC50 ELISA on human CXCL13. A single
Serine (S) to Methionine (M) mutation at position 31 in the
L5055-CDR1 as well as changes to the light chain framework region
(see FIGS. 14B and 15) resulted in generation of "MAb 5261," which
demonstrated a significant improvement in affinity compared to 3D2
and MAb 5080 (Table 6). A comparison of the amino acid sequences of
H1609 (SEQ ID NO: 3) and H2177 (SEQ ID NO: 13) is shown in FIG.
14A, and a comparison of L0293 (SEQ ID NO: 8), L5055 (SEQ ID NO:
17), and L5140 (SEQ ID NO: 15) is shown in FIG. 14B.
TABLE-US-00006 TABLE 6 Antibody affinity for recombinant human and
mouse CXCL13 Heavy Light Affinity (Biacore), nM Chain Chain Human
Mouse Antibody Fc (VH) (VK) CXCL13 CXCL13 3D2 Mouse H1609 L0293 13
159 IgG1 MAb 1476 Human H1609 L0293 11.4 NA (chimeric 3D2) IgG1 MAb
5080 Human H2177 L5055 14.5 59.2 IgG1 MAb 5261 Human H2177 L5140
5.1 8.1 (affinity IgG1 (L5055 improved M31a) MAb 5080)
[0322] The polynucleotide and amino acid sequences of MAb 5080 VH
and VK: H2177 (SEQ ID NO: 13) and L5055 (SEQ ID NO: 17),
respectively; and MAb 5261 VH and VK: H2177 (SEQ ID NO: 12) and
L5140 (SEQ ID NO: 15), respectively, are shown in FIG. 15.
[0323] MAb 5261 specificity for CXCL13: Similar to 3D2, specificity
of MAb 5261 was assessed by specificity ELISA and Capture Epitope
Competition ELISA on a panel that included recombinant chemokines
(recombinant mouse, human, and cynomolgus monkey CXCL13, human
IL-8/CXCL8; human IP-10/CXCL10, human MIG/CXCL9 and human
SDF-1alpha/CXCL12); native human and mouse CXCL13; and various
non-specific antigens (recombinant human C35, streptavidin, bovine
serum albumin (BSA), human serum albumin (HAS), insulin, and
hemoglobin).
[0324] For specificity ELISA, recombinant human, cynomolgus monkey,
and mouse CXCL13 were each coated at 100 nM. MAb 5261 demonstrated
multi-species specificity to CXCL13 (FIGS. 16A-C). The binding of
MAb 5261 on recombinant human (FIG. 16A) and cynomolgus monkey
CXCL13 (FIG. 16B) was comparable to the binding of its direct
"parent", MAb 5080, and stronger than the binding of MAb 1476
(chimeric 3D2). MAb 5261 was significantly superior in binding on
recombinant mouse CXCL13 compared to both MAb 1476 and MAb 5080
(FIG. 16C). The data points for each chemokine represents the mean
of triplicate measurements. EC50 values were calculated from
four-parameter sigmoidal curve fit (R.sup.2 for the curves that
produced EC50 values were 0.99).
[0325] MAb 5261 binding to native human and mouse CXCL13 was
determined by Capture Epitope Competition ELISA. For human ELISA,
human CXCL13 (1:4 dilution of THP1 supernatant or 0.097 nM) was
captured with 6.6 nM MAb 801 and detected with 0.66 nM biotin-3C9.
For mouse ELISA, mouse CXCL13 (1:40 dilution of TNF-Tg organ
extract) was captured with 33 nM MAb 470 and detected with 3.3 nM
biotin-3D2. Each data point represents an average of duplicate
measurements from one of at least three independent experiments.
When tested in Capture Epitope Competition ELISA on native human
(FIG. 17A) and mouse CXCL13 (FIG. 17B), MAb 5261 demonstrated
superiority to both 3D2 and 5080 antibodies for binding to both
human and mouse native CXCL13. Curves shown in FIGS. 17A-B were
fitted using four-parameter sigmoidal curve fit (R.sup.2=0.99).
Example 7
Functional Characterization of Anti-CXCL13 MAb 5261
[0326] Inhibition of human and mouse B-cell migration. The ability
of MAb 5261 to inhibit human CXCL13-induced human B-cell chemotaxis
was tested on both the stable cell line human pre-B-697-hCXCR5 and
primary human tonsillar cells.
[0327] MAb 5261 inhibition of human CXCL13-induced human B-cell
chemotaxis on stable cell line human pre-B-697-hCXCR5 was tested
using the protocol is described in Example 2 above. The human
pre-B-697-hCXCR5 cell migration inhibition by MAb 5261 is shown in
FIG. 18A. For the human primary tonsillar cell studies, the
tonsillar cells were obtained by the mechanical dissociation of the
tissue. Cells (10.sup.6/upper chamber of 5 .mu.m Transwell plate)
were allowed to migrate towards 5 .mu.g/ml human CXCL13 for 2 hours
at 37.degree. C.) Inhibition of human primary tonsillar cell
migration by MAb 5261 is shown in FIG. 18B. The results shown in
FIGS. 18A-B represent an average of triplicate measurements+/-SEM
from one of at least three experiments. Curves were fitted using
four-parameter sigmoidal curve fit (R2=0.98-0.99).
[0328] The effect of MAb 5261 on mouse CXCL13-mediated mouse B-cell
chemotaxis was evaluated on mouse splenocytes from C57Black/6 and
SJL/J mice as described in Example 2 above. Again migration towards
human or murine SDF-1.alpha. (0.1 .mu.g/ml) was used as a negative
control to ensure CXCL 13 specificity of the antibody effect (data
not shown). The splenocyte migration inhibition by MAb 5261 is
shown in FIG. 19 (the data from representative experiments are
shown as mean of duplicate measurements+/-SD). Migration inhibition
values were calculated based on the values obtained with
corresponding Isotype controls.
[0329] As shown in FIGS. 18 and 19, MAb 5261 inhibited both human
and mouse CXCL13-dependent chemotaxis. The differences in EC50
values between cultured and primary cells (see FIG. 18) could
likely be attributed to differences in human CXCL13 concentrations,
e.g., 97 nM (1 .mu.g/ml) was used in human pre-B-697-hCXCR5 cell
migration and 485 nM (5 .mu.g/ml) was used in human tonsillar cell
migration.
[0330] Inhibition of human CXCL13-mediated endocytosis of human
CXCR5 receptor. This experiment was done using human
pre-B-697-hCXCR5 cells treated with human CXCL13 to induce
endocytosis of human CXCR5 receptor according to the methods
described above in Example 3. The amount of human CXCL13 was 2
.mu.M, which was higher than the amount used in the 3D2 endocytosis
assay (i.e., 0.485 .mu.M) shown in Example 3, thus differences in
EC50 values were observed. Inhibition of CXCR5 receptor endocytosis
by MAb 5261 is shown in FIG. 20. The results are shown as an
average of triplicate measurements from one of at least three
independent experiments. The curve was fitted using four-parameter
sigmoidal curve fit (R2=0.99).
Example 8
Generation and Characterization of a Murine Version of Anti-CXCL13
MAb 5261
[0331] MAb 5261 contains human heavy and light variable regions and
human IgGamrna1-F allotype as well as human kappa. A murine
counterpart ("MAb 5378") was engineered with mouse IgG2a (Gamma 2a
chain). IgG2a isotype has close similarities to human IgG1,
including the ability to fix complement and bind to Fc receptor.
MAb 5378 contains the same human heavy and light chain variable
genes as MAb 5261 along with mouse IgG2a constant and mouse kappa,
respectively.
[0332] A common restriction site among the heavy and light chain
expression plasmids was used to allow for the changing of isotypes.
Generation of the isotype species was achieved through restriction
digestion, ligation, and transformation. Specifically, for the MAb
5261 heavy chain, the variable region of the gene was digested with
restriction endonucleases and ligated into comparable sites in an
expression plasmid that contained the mouse IgG2a constant region
in order to make the heavy chain for MAb 5378 (H5188). Similarly,
for the MAb 5261 light chain, the variable region of the gene was
digested with restriction endonucleases and ligated into comparable
sites in an expression plasmid that contains the mouse IgKappa
constant region to make the light chain for MAb 5378 (L5153). The
polypeptide and amino acid sequences of the variable regions of MAb
5378 light and heavy chains are identical to MAb 5261 and are shown
in FIG. 21. The VH and VK complementarity determining regions
(CDRs) are underlined (SEQ ID NOs: 4, 5, 6, 16, 10, and 11,
respectively).
[0333] MAb 5378 affinity measurements. Affinity measurments of MAb
5378 for recombinant human and mouse CXCL13 were measured by
BIACORE.RTM. using methods similar to those described in Example 1.
Mab 5378 affinity for recombinant human and mouse CXCL13 was
compared to MAb 5261 and 3D2. As shown in Table 7, the affinity
measurements (nM) of MAb 5261 and MAb 5378 for both human and mouse
chemokines were significantly improved compared to the 3D2.
TABLE-US-00007 TABLE 7 Affinities of 5261, 5378, and 3D2 for
recombinant human and mouse CXCL13 Affinity, nM Antibody Fc Human
CXCL13 Mouse CXCL13 5261 Human IgG1 5.1 8.1 5378 Mouse IgG2a 4.5
4.2 3D2 Mouse IgG1 13 159
[0334] MAb 5378 epitope mapping. An Epitope Competition ELISA
experiment was performed to determine if MAb 5378 shared a binding
epitope on mouse CXCL13 with MAb 5261. Recombinant mouse CXCL13 was
captured on the plate with 1 .mu.g/ml of MAb 470, 5378 or 5261
(control). Antibody/chemokine interactions were detected with 0.5
.mu.g/ml (3.3 nM) of biotinylated MAb 5261 followed by
Streptavidin-HRP. Commercial rat anti-mouse antibody MAb 470 was
also included into the study. The ability of mouse CXCL13,
pre-incubated with either MAbs 470 or 5378, to bind biotinylated
MAb 5261 was evaluated using Epitope Competition ELISA. It was
shown (FIG. 22), that MAb 5378 shared a mouse CXCL13 binding
epitope with MAb 5261, but not with MAb 470. Thus, MAb 5378 was
shown to retain epitope binding and affinity, which was needed in
order for MAb 5378 to be used as a surrogate for MAb 5261 in animal
model studies. Furthermore, the epitope binding results described
throughout the Examples can be summarized as showing that 3D2, 3C9,
MAb 1476, MAb 5080, MAb 5261, and MAb 5378 all bind the same
epitope of human CXCL13. MAb 5378 specificity for CXCL13.
Specificity of MAb 5378 was evaluated on recombinant human, mouse
and cynomolgus monkey CXCL13 (FIG. 23) and a panel of recombinant
chemokines and various antigens (recombinant chemokines (mouse,
human and cynomolgus monkey CXCL13, human IL-8/CXCL8, human
IP-10/CXCL10, human MIG/CXCL9, and human SDF-1alpha/CXCL12); native
human and mouse CCL13; and various non-specific antigens
(recombinant human C35, streptavidin, bovine serum albumin (BSA),
human serum albumin (HAS), insulin, hemoglobin) (data not shown).
Specificity ELISA was performed as described in Example 1. In
particular, each chemokine was coated at 100 nM. As shown in FIG.
23, MAb 5378 was compared to mouse antibody 3D2 and control (mouse
IgG). MAb 5378 was superior to 3D2, to varying degree, in binding
to the chemokines from all three species. The most significant
differences in binding were observed on mouse CXCL13 showing the
potential advantage of MAb 5378 over 3D2 in animal studies. Each
data point represents mean of triplicate measurements. EC50 values
were calculated from four-parameter sigmoidal curve fit (R.sup.2
for the curves that produced EC50 values were 0.99).
[0335] Inhibition of human and mouse B-cell migration was tested
for MAb 5378. Ability of MAb 5378 to interfere with
CXCL13-dependent chemotaxis of mouse and human B-cells was tested
in migration assays involving cultured (human pre-B-697-hCXCR5
cells; FIG. 24A) and primary (human tonsillar cells; FIG. 24B)
human cells as well as mouse spleenocytes (FIG. 24C) using the
methods described in Examples 2, 7, and 2 respectively. The
chemokine concentrations were: 97 nM of huCXCL13 for human
pre-B-697-huCXCR5 migration; 485 nM of huCXCL13 for human tonsillar
cell migration; and 500 nM of muCXCL13 for mouse spleenocyte
migration. Migration towards human or murine SDF-1 alpha was used
as a negative control (not shown). Migration inhibition values were
calculated based on the values obtained with corresponding Isotype
Controls. The results shown in FIGS. 24A-C represent an average of
triplicate measurements+/-SEM from one of at least three
experiments. Curves were fitted using four-parameter sigmoidal
curve fit (R.sup.2=0.99). In the human migration assays, MAb 5378
was compared to MAb 5261, and in the mouse migration assays, MAb
5378 was compared to 3D2. In both cases, MAb 5378 successfully
inhibited CXCL13-induced human and mouse cell migration to a degree
comparable to MAb 5261 and slightly superior to 3D2.
[0336] Inhibition of human CXCL13-mediated endocytosis of human
CXCR5 receptor. MAb 5378 was compared to its prototype MAb 5261 and
mouse anti-human CXCL13 antibody 3D2 in a human CXCL13-mediated
human CXCR5 receptor internalization assay using the methods
described in Example 3. As shown in FIG. 25, MAb 5378 was identical
to MAb 5261 and significantly superior to 3D2 in its ability to
inhibit human CXCR5 receptor internalization. The data points for
MAb 5261 and MAb 5378 represent average of measurements from two
independent experiments. Data points for 3D2 and Isotype Controls
represent average of triplicate measurements from a single
experiment. Curve was fitted using four-parameter sigmoidal curve
fit (R.sup.2=0.99).
Example 8
Evaluation of Anti-CXCL13 Antibodies in Mouse Disease Model for
Rheumatoid Arthritis
[0337] Murine Model of Rheumatoid Arthritis. Collagen-induced
arthritis (CIA) in mice and rats is a well-established model of
human Rheumatoid arthritis (RA). The disease is typically induced
by intradermal injection of bovine type II collagen emulsified in
Complete Freund's Adjuvant (CFA) and is characterized by production
of mouse collagen antibodies and, subsequently, progressive
development of arthritis in the paws.
[0338] CIA-1: Anti-arthritic efficacy of 1V1Ab 5378 in CIA model
using DBA1/J mice. The disease was induced in DBA1/J mice by
subcutaneous immunization with 100 .mu.g of bovine type II collagen
in CFA enhanced with 100 .mu.g of heat-killed M. tuberculosis
H37Ra, followed by boost immunization on Day 21 with 100 .mu.g of
bovine type II collagen in Incomplete Freunds' Adjuvant (IFA). The
animals were scored for macroscopic signs of arthritis (see Table
8) three times weekly and the Arthritic Index (AI) was calculated
by addition of individual paw scores (the maximum arthritic index
that could be achieved in any given animal was 16).
TABLE-US-00008 TABLE 8 Macroscopic signs of CIA in mice Arthritic
Score Description 0 No visible effects of arthritis 1 Edema and/or
erythema of 1 digit 2 Edema and/or erythema of 2 digits 3 Edema
and/or erythema of more than 2 digits 4 Severe arthritis of entire
paw and digits
[0339] Prophylactic treatment started one day before boost
immunization, i.e., on Day 20 post-induction in animals with low AI
of 2-6, and consisted of the following treatment groups (10 mice
per group):
[0340] A. Mouse IgG Isotype (control)
[0341] B. MAb 5378
[0342] C. etenercept (TNF inhibitor; positive control)
[0343] The mice had been given either intraperitoneal (Mouse IgG
and MAb 5378) or subcutaneous (etenercept) injections of 0.6 mg (30
mg/kg) of antibody twice a week for three weeks. The study was
terminated on Day 41 postinduction.
[0344] As shown in FIG. 26 prophylactic treatment with MAb 5378
resulted in a decreased rate of disease development and significant
inhibition of disease severity, which became evident at the study
endpoint. Statistically significant differences were observed at
the study endpoint (Day 41) between Mouse IgG and MAb 5378 treated
groups (P<0.05) and Mouse IgG and etenercept treated groups
(P<0.05). The inhibitory effect of MAb 5378 was not
statistically different from the inhibitory effect of positive
control agent etenercept (P>0.05).
[0345] CIA-2: Anti-arthritic efficacy of MAb 5378 in CIA model in
DBA1/J mice. A second CIA study with MAb 5378, "CIA-2," was
performed. In this study, the disease was induced in DBA1/J mice as
described above for CIA-1. Again prophylactic treatment started one
day before boost immunization, on Day 20 postinductions in animals
with low AI of 2-6. In addition to etenercept, commercial rat
anti-murine CXCL13 antibody MAb 470 was used as a control. The
study therefore included the following groups:
[0346] A. Mouse IgG Isotype control
[0347] B. MAb 5378
[0348] C. etenercept (TNF inhibitor; positive control)
[0349] D. MAb 470
[0350] The mice were given either intraperitoneal (Mouse IgG, MAb
470 and MAb 5378) or subcutaneous (etenercept) injections of 0.6 mg
(30 mg/kg) of antibody twice a week for three weeks. The study was
terminated on Day 42 postinduction.
[0351] As evident from FIG. 27, prophylactic treatment with MAb
5378 again resulted in a decreased rate of disease development and
significant inhibition of disease severity throughout the study as
well as at the endpoint (Day 42). Statistically significant
differences were observed between Mouse IgG and MAb 5378 treated
groups (P<0.05) and Mouse IgG and MAb 470 treated groups
(P<0.05). The inhibitory effect of MAb 5378 was not
statistically different from the inhibitory effects of positive
control agent etenercept and rat anti-murine CXCL13 antibody MAb
470 (P>0.05).
[0352] GC-1: Effect of MAb 5378 on germinal center formation in
immunized BALB/c mice. Given the successful performance of our
anti-CXCL13 antibodies in animal models of autoimmunity, the
possible mechanism of action involving disruption of ectopic
germinal center formation was tested. Germinal centers in MAb
5378-treated BALB/C mice immunized with 100 .mu.g
4-hydroxy-3-nitrophenylacetyl-chicken-g-globulin (NP-CGG)
precipitated in 100 ul of alum were examined. The animals were
injected intraperitoneally with total of 0.6 mg (30 mg/kg) a week
of either Mouse isotype control (0.6-mg weekly injections) or MAb
5378 (0.3-mg bi-weekly injections). The injections started one week
before and continued through one week after NP-GCC immunization.
Germinal center formation was evaluated on day 10 post-challenge.
Single cell suspensions from spleens and lymph nodes were analyzed
by flow cytometry for the presence of various B-cell (activated GC
B-cells; follicular and marginal zone B-cells) and T-cell (CD4+ and
CD8+) subsets. Although MAb 5378 produced no effect on T-cells or
follicular and marginal zone B-cells (data not shown), germinal
center B-cells (B220+/CD38low/PNA+) were reduced in spleens and
lymph nodes by 43% and 41%, respectively (FIG. 28). Spleen group
means were compared by using unpaired student t-test. The reduction
in GC-B cells was statistically significant in MAb 5378-treated
spleens compared to Mouse IgG treated group (P<0.05). The cells
recovered from lymph nodes were very low in numbers and therefore
were pooled (as a result, no statistical analysis was performed
with the data from the lymph nodes).
Example 9
Evaluation of Anti-CXCL13 Antibodies in Mouse Model for
Helicobacter Infection
[0353] Murine Model of Helicobacter infection. Heliobacter species
such as H. heilmannii and H. Pylori induce gastric MALT lymphoma in
patients. A mouse model of Heliobacter induced gastric lymphoid
follicles was described in Nobutani et al., FEMS Immunol Med
Microbiol 60:156-164 (2010), which is incorporated herein by
reference in its entirety. The Nobutani et al. mouse model was used
herein to test the effect of anti-CXCL13 antibody in reducing
gastric lymphoid follicles. The treatment schedule for H.
heilmannii infection of mice and antibody administration used in
this Example is shown in FIG. 29.
[0354] In particular, C57BL/6J mice were infected with H.
heilmannii. Starting one week post-infection, the mice were
administered either Isotype antibody control or anti-CXCL13
antibody (MAb 5378) weekly for twelve weeks. Anti-CXCL13 MAb 5378
(a mouse IgG2a isotype) was formulated in PBS, pH 7.2 at 3 mg/ml.
Mice were injected with 200 microliters (600 micrograms)
intraperitoneally starting day 7 post-infection and weekly
thereafter. The Isotype control was an independent monoclonal mouse
IgG2a anibody.
[0355] Gastric samples from the mice were evaluated by PCR for
expression of H. heilmannii specific 16s rRNA genes to confirm
infection. PCR amplification reactions involved 1.times. reaction
buffer [20 mM Tris/HCl (pH8.0), 100 mM KCl, 0.1 mM EDTA, 1 mM DTT,
0.5% Tween-20, 0.5% Nonidet P40, and 50% glycerol] containing 1
unit of Taq DNA polymerase (TOYOBO, Osaka, Japan); 10 nmols of each
deoxynucleotide triphosphate; 10 pmols of each oligonucleotide
primer; and 1 .mu.l of the diluted DNA, which was prepared by 1:10
dilution of the original samples with a DNA concentration of
approximately 20-100 ng/.mu.l, in a final volume of 50 .mu.l.
Cycling conditions for the 16s rRNA reactions involved 35 cycles of
94.degree. C. for 30 seconds, 56.degree. C. for 30 seconds, and
72.degree. C. for 30 seconds.
[0356] The H. heilmannii specific 16s rRNA gene PCR primers are
shown below:
TABLE-US-00009 (SEQ ID NO: 24) F: 5'-TTGGGAGGCTTTGTCTTTCCA-3' (SEQ
ID NO: 25) R: 5'-GATTAGCTCTGCCTCGCGGCT-3'
[0357] The results for expression of H. heilmannii specific 16s
rRNA genes amplified in all gastric samples obtained from H.
heilmannii infected mice are shown in FIG. 30. These results show
that all of the treated mice were positive for H. heilmannii
infection.
[0358] CXCL13 expression in gastric mucosa of Helicobacter infected
mice. The mRNA expression levels of CXCL13 in the gastric mucosa of
H. heilmannii infected and noninfected mice was determined by
real-time quantitative PCR. The mRNA expression of CXCL13 in the
gastric mucosa of H. heilmannii infected mice compared to
noninfected wild-type control mice one month and three months after
infection is shown in FIGS. 31A and 31B, respectively. These
results show an increase in CXCL13 expression in H. heilmannii
infected mice.
[0359] CXCL13 expression in gastric mucosa of antibody treated
Helicobacter infected mice. The mRNA expression levels of CXCL13 in
the gastric mucosa of H. heilmannii infected mice after treatment
with Isotype control or anti-CXCL13 antibody was determined by
reverse transcripiton PCR. The mucosal and submucosal layers of the
stomach were removed from the muscularis and serosa, and then
homogenized with 1 ml of TRIZOL Regent (Invitrogen). RNA was
extracted from the homogenates according to the manufacturer's
instructions. RNA was subjected to the reverse transcription
reaction using a High Capacity cDNA Reverse Transcription Kit
(Applied Biosystems, Foster City, Calif.) according to the
manufacturer's protocol. PCR amplification reactions involved
1.times. reaction buffer [20 mM Tris/HCl (pH8.0), 100 mM KCl, 0.1
mM EDTA, 1 mM DTT, 0.5% Tween-20, 0.5% Nonidet P40, and 50%
glycerol] containing 1 unit of Taq DNA polymerase (TOYOBO, Osaka,
Japan); 10 nmols of each deoxynucleotide triphosphatel0 pmols of
each oligonucleotide primer; and 1 .mu.l of the diluted DNA, which
was prepared by 1:10 dilution of the original samples with a DNA
concentration of approximately 100 ng/.mu.l, in a final volume of
50 .mu.l. Cycling conditions for the CXCL13 and .beta.-actin
reactions involved 94.degree. C. for 2 min, 35 cycles of 94.degree.
C. for 30 seconds, 55.degree. C. for 30 seconds, and 72.degree. C.
for 1 min.
[0360] FIG. 32 shows expression of CXCL13 and .beta.-actin control
mRNA in the stomach of H. heilmannii infected mice after Isotype
control or anti-CXCL13 antibody treatment. These results show that
CXCL13 was not expressed in noninfected wild-type mice, but was
expressed in all H. heilmannii infected mice.
[0361] Anti-CXCL13 antibody treatment reduces gastric lymphoid
follicles in Helicobacter infected mice. The stomachs of mice three
months after H. heilmannii infection were resected and opened at
the greater curvature. Half of the stomach was embedded in paraffin
wax, and the paraffin-embedded tissues were sliced and stained with
hematoxylin and eosin (H&E). FIG. 33 shows H&E stained
images of stomach from the Isotype control (left panel) and
anti-CXCL13 antibody (right panel) treated mice. The number of
gastric lymphoid follicles were counted for Isotype control and
anti-CXCL13 antibody samples. The results are depicted in the lower
panel of FIG. 33. These results show a reduction in gastric
follicles in H. heilmannii infected mice treated with anti-CXCL13
antibody relative to control treatment.
[0362] The foregoing description of the specific embodiments will
so fully reveal the general nature of the invention that others
can, by applying knowledge within the skill of the art, readily
modify and/or adapt for various applications such specific
embodiments, without undue experimentation, without departing from
the general concept of the present invention. Therefore, such
adaptations and modifications are intended to be within the meaning
and range of equivalents of the disclosed embodiments, based on the
teaching and guidance presented herein. It is to be understood that
the phraseology or terminology herein is for the purpose of
description and not of limitation, such that the terminology or
phraseology of the present specification is to be interpreted by
the skilled artisan in light of the teachings and guidance.
[0363] The breadth and scope of the present invention should not be
limited by any of the above-described exemplary embodiments, but
should be defined only in accordance with the following claims and
their equivalents.
Sequence CWU 1
1
25113PRTArtificial SequencePLP139-151 1His Ser Leu Gly Lys Trp Leu
Gly His Pro Asp Lys Phe 1 5 10 2369DNAArtificial SequenceH1609
2gaggtgcagc ttcaggagtc tggccctggg atattgcagc cctcccagac cctcaatctg
60acttgttctt tctctggatt ttcactgagc acttttggta tgggtgtagg ctggattcgt
120cagccttcag ggaagggtct ggagtggctg gcacacattt ggtgggatga
tgataggagg 180tataacccag ccctgaagag tcggctcaca atctccaagg
aaacctccaa aaaccaggtg 240ttcctcaaga tcgccaatgt ggacactgca
gatactgcca catactactg tactcgaata 300gcggggtatt atggtagtag
agactggttt gcttactggg gccaagggac cacggtcacc 360gtctcctca
3693123PRTArtificial SequenceH1609 3Glu Val Gln Leu Gln Glu Ser Gly
Pro Gly Ile Leu Gln Pro Ser Gln 1 5 10 15 Thr Leu Asn Leu Thr Cys
Ser Phe Ser Gly Phe Ser Leu Ser Thr Phe 20 25 30 Gly Met Gly Val
Gly Trp Ile Arg Gln Pro Ser Gly Lys Gly Leu Glu 35 40 45 Trp Leu
Ala His Ile Trp Trp Asp Asp Asp Arg Arg Tyr Asn Pro Ala 50 55 60
Leu Lys Ser Arg Leu Thr Ile Ser Lys Glu Thr Ser Lys Asn Gln Val 65
70 75 80 Phe Leu Lys Ile Ala Asn Val Asp Thr Ala Asp Thr Ala Thr
Tyr Tyr 85 90 95 Cys Thr Arg Ile Ala Gly Tyr Tyr Gly Ser Arg Asp
Trp Phe Ala Tyr 100 105 110 Trp Gly Gln Gly Thr Thr Val Thr Val Ser
Ser 115 120 47PRTArtificial SequenceH1609-CDR1 4Thr Phe Gly Met Gly
Val Gly 1 5 516PRTArtificial SequenceH1609-CDR2 5His Ile Trp Trp
Asp Asp Asp Arg Arg Tyr Asn Pro Ala Leu Lys Ser 1 5 10 15
613PRTArtificial SequenceH1609-CDR3 6Ile Ala Gly Tyr Tyr Gly Ser
Arg Asp Trp Phe Ala Tyr 1 5 10 7333DNAArtificial SequenceL0293
7gacattgtgc tgacccagtc tccagcttct ttggctgtgt ctctagggca gagggccacc
60atctcctgca gagccagcga aagtgttgat aattctggca ttagttttat gcactggtac
120cagcagaaac caggacagcc acccaaactc ctcatctttc gtgcatccga
cctagaatct 180gggatccctg ccaggttcag tggcagtggg tctaggacag
acttcaccct caccgttaat 240cctgtggaga ctgatgatgt tgcaacctat
ttctgtcagc aaagtaataa ggatccgtgg 300acgttcggtg gaggcaccaa
gctcgagatc aaa 3338111PRTArtificial SequenceL0293 8Asp Ile Val Leu
Thr Gln Ser Pro Ala Ser Leu Ala Val Ser Leu Gly 1 5 10 15 Gln Arg
Ala Thr Ile Ser Cys Arg Ala Ser Glu Ser Val Asp Asn Ser 20 25 30
Gly Ile Ser Phe Met His Trp Tyr Gln Gln Lys Pro Gly Gln Pro Pro 35
40 45 Lys Leu Leu Ile Phe Arg Ala Ser Asp Leu Glu Ser Gly Ile Pro
Ala 50 55 60 Arg Phe Ser Gly Ser Gly Ser Arg Thr Asp Phe Thr Leu
Thr Val Asn 65 70 75 80 Pro Val Glu Thr Asp Asp Val Ala Thr Tyr Phe
Cys Gln Gln Ser Asn 85 90 95 Lys Asp Pro Trp Thr Phe Gly Gly Gly
Thr Lys Leu Glu Ile Lys 100 105 110 915PRTArtificial
SequenceL0293-CDR1 9Arg Ala Ser Glu Ser Val Asp Asn Ser Gly Ile Ser
Phe Met His 1 5 10 15 107PRTArtificial SequenceL0293-CDR2 10Arg Ala
Ser Asp Leu Glu Ser 1 5 119PRTArtificial SequenceL0293-CDR3 11Gln
Gln Ser Asn Lys Asp Pro Trp Thr 1 5 12369DNAArtificial
sequenceH5188 12caggtgcagc tgcaggagag cggcccaggc ctggtgaagc
ctagcgagac cctgagcctc 60acctgcaccg tcagcggctt tagcctgagc acctttggca
tgggcgtggg ctggattaga 120cagcctccag gcaagggcct ggagtggatt
gcacacattt ggtgggatga tgataggaga 180tataacccag ccctgaagag
cagagtgacc atcagcaagg acaccagcaa gaaccagttc 240agcctgaagc
tgagcagcgt gaccgctgcc gacaccgccg tgtattactg tgccagaatc
300gccggctatt atggcagcag agactggttt gcctactggg gccaaggcac
cacggtcacc 360gtctcctca 36913123PRTArtificial SequenceH5188/H2177
13Gln Val Gln Leu Gln Glu Ser Gly Pro Gly Leu Val Lys Pro Ser Glu 1
5 10 15 Thr Leu Ser Leu Thr Cys Thr Val Ser Gly Phe Ser Leu Ser Thr
Phe 20 25 30 Gly Met Gly Val Gly Trp Ile Arg Gln Pro Pro Gly Lys
Gly Leu Glu 35 40 45 Trp Ile Ala His Ile Trp Trp Asp Asp Asp Arg
Arg Tyr Asn Pro Ala 50 55 60 Leu Lys Ser Arg Val Thr Ile Ser Lys
Asp Thr Ser Lys Asn Gln Phe 65 70 75 80 Ser Leu Lys Leu Ser Ser Val
Thr Ala Ala Asp Thr Ala Val Tyr Tyr 85 90 95 Cys Ala Arg Ile Ala
Gly Tyr Tyr Gly Ser Arg Asp Trp Phe Ala Tyr 100 105 110 Trp Gly Gln
Gly Thr Thr Val Thr Val Ser Ser 115 120 14333DNAArtificial
SequenceL5153 14gacatccaga tgacccagtc tccatcctcc ctgtctgcat
ctgtgggaga cagagtcacc 60atcacttgca gagccagcga aagtgttgat aatatgggca
ttagttttat gcactggtat 120cagcagaaac cagggaaagc ccctaagctc
ctgatcttta gagcatccga cctggaatct 180ggggtcccat caaggttcag
tggcagtgga tctgggacag atttcactct caccatcagc 240agtctgcaac
ctgaagattt tgcaacttac tactgtcagc aaagtaataa ggatccctgg
300accttcggcc aagggaccaa gctcgagatc aaa 33315111PRTArtificial
SequenceL5153/L5140 15Asp Ile Gln Met Thr Gln Ser Pro Ser Ser Leu
Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr Cys Arg Ala
Ser Glu Ser Val Asp Asn Met 20 25 30 Gly Ile Ser Phe Met His Trp
Tyr Gln Gln Lys Pro Gly Lys Ala Pro 35 40 45 Lys Leu Leu Ile Phe
Arg Ala Ser Asp Leu Glu Ser Gly Val Pro Ser 50 55 60 Arg Phe Ser
Gly Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser 65 70 75 80 Ser
Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Ser Asn 85 90
95 Lys Asp Pro Trp Thr Phe Gly Gln Gly Thr Lys Leu Glu Ile Lys 100
105 110 1615PRTArtificial SequenceL5153-CDR1 16Arg Ala Ser Glu Ser
Val Asp Asn Met Gly Ile Ser Phe Met His 1 5 10 15
17111PRTArtificial SequenceL5055 17Asp Ile Gln Met Thr Gln Ser Pro
Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15 Asp Arg Val Thr Ile Thr
Cys Arg Ala Ser Glu Ser Val Asp Asn Ser 20 25 30 Gly Ile Ser Phe
Met His Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro 35 40 45 Lys Leu
Leu Ile Phe Arg Ala Ser Asp Leu Glu Ser Gly Val Pro Ser 50 55 60
Gly Phe Ser Gly Ser Gly Ser Arg Thr Asp Phe Thr Leu Thr Ile Ser 65
70 75 80 Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln
Ser Asn 85 90 95 Lys Asp Pro Trp Thr Phe Gly Gln Gly Thr Lys Leu
Glu Ile Lys 100 105 110 18333DNAArtificial SequenceL5055
18gacatccaga tgacccagtc tccatcctcc ctgtctgcat ctgtgggaga cagagtcacc
60atcacttgca gagccagcga aagtgttgat aattctggca ttagttttat gcactggtat
120cagcagaaac cagggaaagc ccctaagctc ctgatcttta gagcatccga
cctggaatct 180ggggtcccat cagggttcag tggcagtgga tctaggacag
atttcactct caccatcagc 240agtctgcaac ctgaagattt tgcaacttac
tactgtcagc aaagtaataa ggatccctgg 300accttcggcc aagggaccaa
gctcgagatc aaa 33319109PRTHomo sapiens 19Met Lys Phe Ile Ser Thr
Ser Leu Leu Leu Met Leu Leu Val Ser Ser 1 5 10 15 Leu Ser Pro Val
Gln Gly Val Leu Glu Val Tyr Tyr Thr Ser Leu Arg 20 25 30 Cys Arg
Cys Val Gln Glu Ser Ser Val Phe Ile Pro Arg Arg Phe Ile 35 40 45
Asp Arg Ile Gln Ile Leu Pro Arg Gly Asn Gly Cys Pro Arg Lys Glu 50
55 60 Ile Ile Val Trp Lys Lys Asn Lys Ser Ile Val Cys Val Asp Pro
Gln 65 70 75 80 Ala Glu Trp Ile Gln Arg Met Met Glu Val Leu Arg Lys
Arg Ser Ser 85 90 95 Ser Thr Leu Pro Val Pro Val Phe Lys Arg Lys
Ile Pro 100 105 201219DNAHomo sapiens 20gagaagatgt ttgaaaaaac
tgactctgct aatgagcctg gactcagagc tcaagtctga 60actctacctc cagacagaat
gaagttcatc tcgacatctc tgcttctcat gctgctggtc 120agcagcctct
ctccagtcca aggtgttctg gaggtctatt acacaagctt gaggtgtaga
180tgtgtccaag agagctcagt ctttatccct agacgcttca ttgatcgaat
tcaaatcttg 240ccccgtggga atggttgtcc aagaaaagaa atcatagtct
ggaagaagaa caagtcaatt 300gtgtgtgtgg accctcaagc tgaatggata
caaagaatga tggaagtatt gagaaaaaga 360agttcttcaa ctctaccagt
tccagtgttt aagagaaaga ttccctgatg ctgatatttc 420cactaagaac
acctgcattc ttcccttatc cctgctctgg attttagttt tgtgcttagt
480taaatctttt ccaggaaaaa gaacttcccc atacaaataa gcatgagact
atgtaaaaat 540aaccttgcag aagctgatgg ggcaaactca agcttcttca
ctcacagcac cctatataca 600cttggagttt gcattcttat tcatcaggga
ggaaagtttc tttgaaaata gttattcagt 660tataagtaat acaggattat
tttgattata tacttgttgt ttaatgttta aaatttctta 720gaaaacaatg
gaatgagaat ttaagcctca aatttgaaca tgtggcttga attaagaaga
780aaattatggc atatattaaa agcaggcttc tatgaaagac tcaaaaagct
gcctgggagg 840cagatggaac ttgagcctgt caagaggcaa aggaatccat
gtagtagata tcctctgctt 900aaaaactcac tacggaggag aattaagtcc
tacttttaaa gaatttcttt ataaaattta 960ctgtctaaga ttaatagcat
tcgaagatcc ccagacttca tagaatactc agggaaagca 1020tttaaagggt
gatgtacaca tgtatccttt cacacatttg ccttgacaaa cttctttcac
1080tcacatcttt ttcactgact ttttttgtgg ggggcggggc cggggggact
ctggtatcta 1140attctttaat gattcctata aatctaatga cattcaataa
agttgagcaa acattttact 1200taaaaaaaaa aaaaaaaaa 121921109PRTMus
musculus 21Met Arg Leu Ser Thr Ala Thr Leu Leu Leu Leu Leu Ala Ser
Cys Leu 1 5 10 15 Ser Pro Gly His Gly Ile Leu Glu Ala His Tyr Thr
Asn Leu Lys Cys 20 25 30 Arg Cys Ser Gly Val Ile Ser Thr Val Val
Gly Leu Asn Ile Ile Asp 35 40 45 Arg Ile Gln Val Thr Pro Pro Gly
Asn Gly Cys Pro Lys Thr Glu Val 50 55 60 Val Ile Trp Thr Lys Met
Lys Lys Val Ile Cys Val Asn Pro Arg Ala 65 70 75 80 Lys Trp Leu Gln
Arg Leu Leu Arg His Val Gln Ser Lys Ser Leu Ser 85 90 95 Ser Thr
Pro Gln Ala Pro Val Ser Lys Arg Arg Ala Ala 100 105 221162DNAMus
musculus 22gagctaaagg ttgaactcca cctccaggca gaatgaggct cagcacagca
acgctgcttc 60tcctcctggc cagctgcctc tctccaggcc acggtattct ggaagcccat
tacacaaact 120taaaatgtag gtgttctgga gtgatttcaa ctgttgtcgg
tctaaacatc atagatcgga 180ttcaagttac gccccctggg aatggctgcc
ccaaaactga agttgtgatc tggaccaaga 240tgaagaaagt tatatgtgtg
aatcctcgtg ccaaatggtt acaaagatta ttaagacatg 300tccaaagcaa
aagtctgtct tcaactcccc aagctccagt gagtaagaga agagctgcct
360gaagccacta tcatctcaaa agacacacct gcaccttttt ttttatccct
gctctgaatt 420ttagatatgt tcttagttaa agaatttcca agaaaataac
tcccctctac aaacaaacat 480gactgtaggt aaaacaaagc aaaaacaaac
aagcaaacaa acaaactaaa aaaaacccaa 540tcctgcagga gctgagaggg
aatgctcaag ctccgttgca tacccaaccc acatccttgt 600tccttaagaa
aggctatttg agaacaggca tttagtgaca acccacttca gatgcatgtg
660gtaatagatc tgttgtttaa tgttaaacta tcctagattg tcgaggaatg
aaaaacctac 720atgtcaaatg tgaacttgta gctcgtacta acaagaggtt
tgcgagatgg acttcagtta 780ttttgcaccc ttgtaaaacg caggcttcca
aaatagtctc cagaaggttc ctgggaagct 840ggtgcaatgc catcatgagg
tggtgcaaag caggtctcct ttagagaaaa gcttcctggg 900ggaaacagtc
ctactttgaa aggttgcttg tataagattt attgtcttgc attaaaacca
960gtaacaattg aaagatcctc agcttaaagg tccaggctct tcagcagtat
acaaatatat 1020tcctttgcac tgtgaccctg atgatctatt tttattattc
atatctttca cacagacaaa 1080ataccagcct cttgtatcag attctttaat
gtttcctatt catctggtgt cattcaataa 1140atgtaatcaa atgttttgct ta
11622382PRTMacaca fascicularis 23Val Leu Glu Val Tyr Tyr Thr His
Leu Arg Cys Arg Cys Val Gln Glu 1 5 10 15 Ser Ser Val Phe Ile Pro
Arg Arg Phe Ile Asp Arg Ile Gln Ile Ser 20 25 30 Pro Arg Gly Asn
Gly Cys Pro Arg Lys Glu Ile Ile Val Trp Lys Lys 35 40 45 Asn Lys
Ser Val Val Cys Val Asp Pro Gln Ala Glu Trp Ile Gln Arg 50 55 60
Ile Met Glu Met Leu Arg Lys Lys Ser Ser Ser Thr Pro Pro Val Pro 65
70 75 80 Val Phe 2421DNAArtificial Sequence16s Forward primer
24ttgggaggct ttgtctttcc a 212521DNAArtificial Sequence16s Reverse
primer 25gattagctct gcctcgcggc t 21
* * * * *