U.S. patent application number 14/142175 was filed with the patent office on 2015-01-15 for methods and compositions to evaluate antibody treatment response.
The applicant listed for this patent is Guillaume Cartron, Philippe Colombat, Herve Watier. Invention is credited to Guillaume Cartron, Philippe Colombat, Herve Watier.
Application Number | 20150017633 14/142175 |
Document ID | / |
Family ID | 8182931 |
Filed Date | 2015-01-15 |
United States Patent
Application |
20150017633 |
Kind Code |
A1 |
Watier; Herve ; et
al. |
January 15, 2015 |
METHODS AND COMPOSITIONS TO EVALUATE ANTIBODY TREATMENT
RESPONSE
Abstract
The present invention relates to methods and compositions to
evaluate or assess the response of a subject to particular
therapeutic treatment. More particularly, the invention provides
methods to determine the response of subjects, or to adapt the
treatment protocol of subjects treated with therapeutic antibodies.
The invention is based on a determination of the FCGR3A genotype of
a subject. The invention can be used for patients with
malignancies, particularly lymphoma, and is suited to select best
responders and/or adjust treatment condition or protocol for low
responders.
Inventors: |
Watier; Herve; (Ballan-Mire,
FR) ; Cartron; Guillaume; (Savonnieres, FR) ;
Colombat; Philippe; (Larcay, FR) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Watier; Herve
Cartron; Guillaume
Colombat; Philippe |
Ballan-Mire
Savonnieres
Larcay |
|
FR
FR
FR |
|
|
Family ID: |
8182931 |
Appl. No.: |
14/142175 |
Filed: |
December 27, 2013 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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12858343 |
Aug 17, 2010 |
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14142175 |
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10492183 |
Apr 9, 2004 |
7858300 |
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PCT/EP02/11397 |
Oct 11, 2002 |
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12858343 |
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Current U.S.
Class: |
435/6.11 |
Current CPC
Class: |
C12Q 1/6886 20130101;
C12Q 1/6881 20130101; C12Q 2600/106 20130101; C12Q 2600/156
20130101 |
Class at
Publication: |
435/6.11 |
International
Class: |
C12Q 1/68 20060101
C12Q001/68 |
Foreign Application Data
Date |
Code |
Application Number |
Oct 19, 2001 |
EP |
01402718.9 |
Claims
1. A method of assessing the response of a subject to a therapeutic
antibody treatment, comprising determining in vitro the FCGR3A158
genotype of said subject.
2. A method of selecting patients for therapeutic antibody
treatment, the method comprising determining in vitro the FCGR3A158
genotype of said subject.
3. A method of improving the efficacy or treatment condition or
protocol of a therapeutic antibody treatment in a subject,
comprising determining in vitro the FCGR3A158 genotype of said
subject.
4. The method of any one of claims 1 to 3, comprising determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor, a
Valine at position 158 being indicative of a better response to
said treatment and a phenylalanine at position 158 being indicative
of a lower response to said treatment.
5. The method of any one of claims 1 to 4, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises a step of sequencing the Fc.gamma.RIIIa receptor gene or
RNA or a portion thereof comprising the nucleotides encoding amino
acid residue 158.
6. The method of any one of claims 1 to 5, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises a step of amplifying the Fc.gamma.RIIIa receptor gene or
RNA or a portion thereof comprising the nucleotides encoding amino
acid residue 158.
7. The method of claim 6, wherein amplification is performed by
polymerase chain reaction (PCR), such as PCR, RT-PCR and nested
PCR.
8. The method of any one of claims 1 to 7, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises a step of allele-specific restriction enzyme
digestion.
9. The method of any one of claims 1 to 8, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises a step of hybridization of the Fc.gamma.RIIIa receptor
gene or RNA or a portion thereof comprising the nucleotides
encoding amino acid residue 158, with a nucleic acid probe specific
for the genotype Valine or Phenylalanine.
10. The method of any one of claims 1 to 9, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises: Obtaining genomic DNA from a biological sample,
Amplifying the Fc.gamma.RIIIa receptor gene or a portion thereof
comprising the nucleotides encoding amino acid residue 158, and
determining amino acid residue at position 158 of said
Fc.gamma.RIIIa receptor gene.
11. The method of any one of claims 1 to 9, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises: Obtaining genomic DNA from a biological sample,
Amplifying the Fc.gamma.RIIIa receptor gene or a portion thereof
comprising the nucleotides encoding amino acid residue 158,
Introducing an allele-specific restriction site, Digesting the
nucleic acids with the enzyme specific for said restriction site
and, Analysing the digestion products, i.e., by electrophoresis,
the presence of digestion products being indicative of the presence
of the allele.
12. The method of any one of claims 1 to 9, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises: total (or messenger) RNA extraction from cell or
biological sample or biological fluid in vitro or ex vivo,
optionally cDNA synthesis, (PCR) amplification with specific
FCGRIIIa oligonucleotide primers, and analysis of PCR products.
13. The method of any one of claims 1 to 4, wherein determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises a step of sequencing the Fc.gamma.RIIIa receptor
polypeptide or a portion thereof comprising amino acid residue
158.
14. The method of any one of the preceding claims, wherein the
subject is a human subject.
15. The method of claim 14, wherein the subject has a tumor, a
viral infection, or a disease condition associated with allogenic
or pathological immunocompetent cells.
16. The method of claim 15, wherein the subject has a tumor and the
therapeutic antibody treatment aims at reducing the tumor
burden.
17. The method of claim 16, wherein the tumor is a lymphoma,
particularly a NHL.
18. The method of any one of the preceding claims, wherein the
antibody is an IgG1 or an IgG3.
19. The method of claim 18, wherein the antibody is an anti-CD20
antibody, particularly rituximab.
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application is a continuation of U.S. application Ser.
No. 12/858,343, filed Aug. 17, 2010, which in turn, is a
continuation of U.S. application Ser. No. 10/492,183, filed Apr. 9,
2004, now U.S. Pat. No. 7,858,300 issued on Dec. 28, 2010, which,
in turn, is the U.S. National Stage application of International
Patent Application No. PCT/EP02/11397, filed Oct. 11, 2002, which
claims the benefit of European Patent Application No. EP
01402718.9, filed Oct. 19, 2001. The entire contents of each of
these applications are expressly incorporated herein by
reference.
[0002] The present invention relates to methods and compositions to
evaluate or assess the response of a subject to particular
therapeutic treatment. More particularly, the invention provides
methods to determine the response of subjects, or to adapt the
treatment protocol of subjects treated with therapeutic antibodies.
The invention can be used for patients with malignancies,
particularly lymphoma, and is suited to select best responders
and/or adjust treatment condition or protocol for low
responders.
INTRODUCTION
[0003] Various therapeutic strategies in human beings are based on
the use of therapeutic antibodies. This includes, for instance, the
use of therapeutic antibodies developed to deplete target cells,
particularly diseased cells such as virally-infected cells, tumor
cells or other pathogenic cells, including allogenic
immunocompetent cells. Such antibodies are typically monoclonal
antibodies, of IgG species, typically IgG1 and IgG3. These
antibodies can be recombinant antibodies and humanized antibodies,
comprising functional domains from various species or origin or
specificity. A particular example of such therapeutic antibodies is
rituximab (Mabthera.RTM., Rituxan.RTM.), which is a chimeric
anti-CD20 IgG1 monoclonal antibody made with human .gamma.l and
.kappa. constant regions linked to murine variable domains.sup.1.
For a few years, rituximab has been considerably modifying the
therapeutical strategy against B lymphoproliferative malignancies,
particularly non-Hodgkin's lymphomas (NHL). Other examples of
intact humanized IgG1 antibodies include alemtuzumab
(Campath-1H.RTM.), which is used in the treatment of B cell
malignancies or trastuzumab (Herceptin.RTM.), which is used in the
treatment of breast cancer. Additional examples of therapeutic
antibodies under development are disclosed in the art.
[0004] While these antibodies represent a novel efficient approach
to human therapy, particularly for treatment of tumors, they do not
always exhibit a strong efficacy and their use could be improved by
evaluating the response of subjects thereto. For instance, while
rituximab, alone or in combination with chemotherapy was shown to
be effective in the treatment of both low-intermediate.sup.2-8 and
high-grade NHL.sup.6,9, 30% to 50% of patients with low grade NHL
have no clinical response to rituximab.sup.4,5. It has been
suggested that the level of CD20 expression on lymphoma
cells.sup.2, the presence of high tumor burden at the time of
treatment.sup.6 or low serum rituximab concentrations may explain
the lack of efficacy of rituximab in some patients. Nevertheless,
the actual causes of treatment failure remain largely unknown.
[0005] The availability of methods allowing the evaluation of
patient response to antibody treatment would greatly enhance the
therapeutic efficacy of these products. However, the precise mode
of action in vivo of such therapeutic antibodies is not clearly
documented. Indeed, while in vitro studies suggest various possible
modes of action of rituximab (antibody-dependant cell-mediated
cytotoxicity (ADCC).sup.10,11, complement-dependant
cytotoxicity.sup.10, 12, 13, direct signalling leading to
apoptosis.sup.14, 15, etc.), the clear action of these target
cell-depleting antibodies in vivo is not documented in humans.
Furthermore, while ADCC is an important effector mechanism in the
eradication of intracellular pathogens and tumor cells, the role of
an ADCC is still controversial.sup.12,13.
[0006] The present invention now proposes novel methods and
compositions to assess the therapeutic response of a subject to a
therapeutic antibody. The invention also proposes methods to select
patients having best responding profile to therapeutic antibody
treatment. The invention also relates to methods of treating
patients with therapeutic antibodies, comprising a prior step of
evaluating the patient's response. The invention also relates to
compositions and kits suitable to perform the invention. The
invention may as well be used in clinical trials or experimental
settings, to assess or monitor a subject's response, or to verify
the mode of action of an antibody.
[0007] The invention is based, in part, on the demonstration of a
correlation between the genotype of a subject and its ability to
respond to therapeutic antibody treatment. More specifically, the
invention shows that the genotype of the Fc.gamma.RIIIa receptor
directly correlates with the subject's response to therapeutic
antibody treatment.
[0008] Three classes of Fc.gamma.R (Fc.gamma.RI, Fc.gamma.RII and
Fc.gamma.RIII) and their subclasses are encoded by eight genes in
humans, all located on the long arm of chromosome 1. Some of these
genes display a functional allelic polymorphism generating
allotypes with different receptor properties. These polymorphisms
have been identified as genetic factors increasing the
susceptibility to autoimmune or infectious diseases.sup.19, 21. One
of these genetic factors is a gene dimorphism in FCGR3A, which
encodes Fc.gamma.RIIIa with either a phenylalanine (F) or a valine
(V) at amino-acid position 158.sup.22,23. This residue directly
interacts with the lower hinge region of IgG1 as recently shown by
IgG1-Fc.gamma.RIII co-cristallization.sup.24. It has been clearly
demonstrated that human IgG1 binds more strongly to homozygous
Fc.gamma.RIIIa-158V natural killer cells (NK) than to homozygous
Fc.gamma.RIIIa-158F or heterozygous NK cells.sup.22,23.
[0009] We undertook to evaluate a possible correlation between the
FCGR3A genotype and a patient response to therapeutic antibody
treatment in vivo. Our invention stems in part from the unexpected
discovery that a very strong correlation exists between said
genotype and said response profile, the presence of a valine
residue at position 158 being indicative of a high response rate.
More specifically, the genotyping of FCGR3A was performed in
patients with previously untreated follicular NHL who had received
rituximab alone, a particular situation in which the response rate
is very high.sup.5. The FCGR2A-131H/R was also determined as
control since this gene co-localizes with FCGR3A on chromosome lq22
and encodes the macrophage Fc.gamma.RIIa receptor.
[0010] The FCGR3A-158V/F genotype was determined in 47 patients
having received rituximab for a previously untreated follicular
non-Hodgkin's lymphoma. Clinical and molecular response were
evaluated at two months (M2) and at one year (M12). Positive
molecular response was defined as a disappearance of the BCL2-JH
gene rearrangement in both peripheral blood and bone marrow.
FCGR3A-158V homozygous patients were 21% whereas FCGR3A-158F
homozygous and heterozygous patients (FCGR3A-158F carriers) were
34% and 45%, respectively. The objective response rates at M2 and
M12 were 100% and 90% in FCGR3A-158V homozygous patients compared
with 65% (p=0.02) and 51% (p=0.03) in FCGR3A-158F carriers. A
positive molecular response was observed at M12 in 5/6 of
homozygous FCGR3A-158V patients compared with 5/16 of FCGR3A-158F
carriers (p=0.04). Furthermore, the homozygous FCGR3A-158V genotype
was confirmed to be the single parameters associated with clinical
and molecular responses in multivariate analysis and was also
associated with a lower rate of disease progression (p=0.05).
[0011] Accordingly, the present invention establishes, for the
first time, an association between the FCGR3A genotype and clinical
and molecular responses to therapeutic antibodies. The invention
thus provides a first unique marker that can be used to monitor,
evaluate or select a patient's response. This invention thus
introduces new pharmacogenetical approaches in the management of
patients with malignancies, viral infections or other diseases
related to the presence of pathological cells in a subject,
particularly non-Hodgkin's lymphoma.
[0012] An object of this invention resides in a method of assessing
the response of a subject to a therapeutic antibody treatment,
comprising determining in vitro the FCGR3A genotype and/or the
presence of a polymorphism in the Fc.gamma.RIIIa receptor of said
subject. More specifically, the method comprises determining in
vitro the FCGR3A158 genotype of said subject.
[0013] A further object of this invention is a method of selecting
patients for therapeutic antibody treatment, the method comprising
determining in vitro the FCGR3A genotype and/or the presence of a
polymorphism in the Fc.gamma.RIIIa receptor of said subject. More
specifically, the method comprises determining in vitro the
FCGR3A158 genotype of said subject.
[0014] An other object of this invention is a method of improving
the efficacy or treatment condition or protocol of a therapeutic
antibody treatment in a subject, comprising determining in vitro
the FCGR3A genotype and/or the presence of a polymorphism in the
Fc.gamma.RIIIa receptor of said subject. More specifically, the
method comprises determining in vitro the FCGR3A158 genotype of
said subject.
[0015] More specifically, determining in vitro the FCGR3A158
genotype of a subject comprises determining amino acid residue at
position 158 of Fc.gamma.RIIIa receptor (or corresponding codon in
the FCGR3A gene), a valine at position 158 being indicative of a
better response to said treatment and a phenylalanine at position
158 being indicative of a lower response to said treatment.
[0016] Within the context of this invention, the term "therapeutic
antibody or antibodies" designates more specifically any antibody
that functions to deplete target cells in a patient. Specific
examples of such target cells include tumor cells, virus-infected
cells, allogenic cells, pathological immunocompetent cells (e.g., B
lymphocytes, T lymphocytes, antigen-presenting cells, etc.)
involved in allergies, autoimmune diseases, allogenic reactions,
etc., or even healthy cells (e.g., endothelial cells in an
anti-angiogenic therapeutic strategy). Most preferred target cells
within the context of this invention are tumor cells and
virus-infected cells. The therapeutic antibodies may, for instance,
mediate a cytotoxic effect or a cell lysis, particularly by
antibody-dependant cell-mediated cytotoxicity (ADCC). ADCC requires
leukocyte receptors for the Fc portion of IgG (Fc.gamma.R) whose
function is to link the IgG-sensitized antigens to
Fc.gamma.R-bearing cytotoxic cells and to trigger the cell
activation machinery. While this mechanism of action has not been
evidenced in vivo in humans, it may account for the efficacy of
such target cell-depleting therapeutic antibodies. The therapeutic
antibodies may by polyclonal or, preferably, monoclonal. They may
be produced by hybridomas or by recombinant cells engineered to
express the desired variable and constant domains. The antibodies
may by single chain antibodies or other antibody derivatives
retaining the antigen specificity and the lower hinge region or a
variant thereof. These may be polyfunctional antibodies,
recombinant antibodies, ScFv, humanized antibodies, or variants
thereof. Therapeutic antibodies are specific for surface antigens,
e.g., membrane antigens. Most preferred therapeutic antibodies are
specific for tumor antigens (e.g., molecules specifically expressed
by tumor cells), such as CD20, CD52, ErbB2 (or HER2/Neu), CD33,
CD22, CD25, MUC-1, CEA, KDR, .alpha.V.beta.3, etc., particularly
lymphoma antigens (e.g., CD20). The therapeutic antibodies are
preferably IgG1 or IgG3, more preferably IgG1.
[0017] Typical examples of therapeutic antibodies of this invention
are rituximab, alemtuzumab and trastuzumab. Such antibodies may be
used according to clinical protocols that have been authorized for
use in human subjects. Additional specific examples of therapeutic
antibodies include, for instance, epratuzumab, basiliximab,
daclizumab, cetuximab, labetuzumab, sevirumab, tuvurimab,
palivizumab, infliximab, omalizumab, efalizumab, natalizumab,
clenoliximab, etc., as listed in the following table:
TABLE-US-00001 Ab specificity DCI Commercial name Typical
Indications Anti-CD20 rituximab MabThera .RTM., LNH B Rituxan .RTM.
Anti-CD52 alemtuzumab CAMPATH-1H .RTM. LLC, allograft Anti-CD33
Zamyl .TM. Acute myeloid Leukemia Anti-HLA-DR Remitogen .TM. LNH B
Anti-CD22 epratuzumab LymphoCide .TM. LNH B Anti-erbB2 trastuzumab
Herceptin .RTM., Metastatic breast cancer (HER-2/neu) Anti-FGFR
cetuximab ORL and colorectal Cancers (HER-1, erbBl) Anti-MUC-1
Therex .RTM. Breast and epithelial cancers Anti-CEA labetuzumab
CEA-Cide .TM. Anti-.alpha.V.beta.3 Vitaxin Cancers
(anti-angiogenic) Anti-KDR Cancers (anti-angiogenic) (VEGFR2)
anti-VRS palivizumab Synagis .RTM. Viral diseases fusion protein
anti-VRS Numax .TM. '' fusion protein CMV sevirumab Protovir CMV
Infection HBs tuvirumab Ostavir .TM. Hepatitis B Anti-CD25
basiliximab Simulect .RTM. Prevention/treatment allograft rejection
Anti-CD25 daclizumab Zenapax .RTM. Prevention/treatment allograft
rejection anti-TNF-.alpha. infliximab Remicade .TM. Crohn disease,
polyarthrite rhumatoid anti-IgE omalizumab Xolair .TM. Asthma
anti-integrin .alpha.L efalizumab Xanelim .TM. psoriasis (CD11a,
LFA-1) anti-CD4 keliximab anti-CD2 siplizumab Anti-CD64 anemia
anti-CD 147 GvH anti-integrin .alpha.4 natalizumab Antegren .RTM.
Sclerosis, Crohn (.alpha.4B.beta.1-.alpha.4.beta.7) Anti-integrin
.beta.7 Crohn, RCH anti-CD4* clenoliximab
[0018] Within the context of the present invention, a subject or
patient includes any mammalian subject or patient, more preferably
a human subject or patient.
[0019] According to the invention the term FCGR3A gene refers to
any nucleic acid molecule encoding a Fc.gamma.RIIIa polypeptide in
a subject. This term includes, in particular, genomic DNA, cDNA,
RNA (pre-rRNA, messenger RNA, etc.), etc. or any synthetic nucleic
acid comprising all or part of the sequence thereof. Synthetic
nucleic acid includes cDNA, prepared from RNAs, and containing at
least a portion of a sequence of the FCGR3A genomic DNA as for
example one or more introns or a portion containing one or more
mutations. Most preferably, the term FCGR3A gene refers to genomic
DNA, cDNA or mRNA, typically genomic DNA or mRNA. The FCGR3A gene
is preferably a human FCGRIIIa gene or nucleic acid, i.e.,
comprises the sequence of a nucleic acid encoding all or part of a
Fc.gamma.RIIIa polypeptide having the sequence of human
Fc.gamma.RIIIa polypeptide. Such nucleic acids can be isolated or
prepared according to known techniques. For instance, they may be
isolated from gene libraries or banks, by hybridization techniques.
They can also be genetically or chemically synthesized. The genetic
organization of a human FCGRIIIa gene is depicted on FIG. 2. The
amino acid sequence of human Fc.gamma.RIIIa is represented FIG. 3.
Amino acid position 158 is numbered from residue 1 of the mature
protein. It corresponds to residue 176 of the pre-protein having a
signal peptide. The sequence of a wild type FCGR3A gene is
represented on FIG. 4 (see also Genbank accession Number AL590385
or NM.sub.--000569 for partial sequence).
[0020] Within the context of this invention, a portion or part
means at least 3 nucleotides (e.g., a codon), preferably at least 9
nucleotides, even more preferably at least 15 nucleotides, and can
contain as much as 1000 nucleotides. Such a portion can be obtained
by any technique well known in the art, e.g., enzymatic and/or
chemical cleavage, chemical synthesis or a combination thereof. The
sequence of a portion of a FCGR3A gene encoding amino acid position
158 is represented below, for sake of clarity:
TABLE-US-00002 cDNA 540 550 560 570 580 genomic DNA 4970 4900 4990
5000 158F allele tcctacttctgcagggggctttttgggagtaaaaatgtgtcttca S Y
F C R G L F G S K N V S S 158V allele
tcctacttctgcagggggcttgttgggagtaaaaatgtgtcttca S Y F C R G L V G S K
N V S S
[0021] As indicated above, the invention comprises a method of
determining in vitro the FCGR3A158 genotype of said subject. This
more particularly comprises determining the nature of amino acid
residue present (or encoded) at position 158 of the Fc.gamma.RIIIa
polypeptide.
[0022] Genotyping the FCGR3A gene or corresponding polypeptide in
said subject may be achieved by various techniques, comprising
analysing the coding nucleic acid molecules or the encoded
polypeptide. Analysis may comprise sequencing, migration,
electrophoresis, immuno-techniques, amplifications, specific
digestions or hybridisations, etc.
[0023] In a particular embodiment, determining amino acid residue
at position 158 of Fc.gamma.RIIIa receptor comprises a step of
sequencing the FCGR3A receptor gene or RNA or a portion thereof
comprising the nucleotides encoding amino acid residue 158.
[0024] In an other particular embodiment, determining amino acid
residue at position 158 of Fc.gamma.RIIIa receptor comprises a step
of amplifying the FCGR3A receptor gene or RNA or a portion thereof
comprising the nucleotides encoding amino acid residue 158.
Amplification may be performed by polmerase chain reaction (PCR),
such as simple PCR, RT-PCR or nested PCR, for instance, using
conventional methods and primers.
[0025] In this regard, amplification primers for use in this
invention more preferably contain less than about 50 nucleotides
even more preferably less than 30 nucleotides, typically less than
about 25 or 20 nucleotides. Also, preferred primers usually contain
at least 5, preferably at least 8 nucleotides, to ensure
specificity. The sequence of the primer can be prepared based on
the sequence of the FCGR3A gene, to allow full complementarity
therewith, preferably. The probe may be labelled using any known
techniques such as radioactivity, fluorescence, enzymatic,
chemical, etc. This labeling can use for example Phosphor 32,
biotin (16-dUTP), digoxygenin (11-dUTP). It should be understood
that the present invention shall not be bound or limited by
particular detection or labelling techniques. The primers may
further comprise restriction sites to introduce allele-specific
restriction sites in the amplified nucleic acids, as disclosed
below.
[0026] Specific examples of such amplification primers are, for
instance, SEQ ID NO: 1-4.
[0027] It should be understood that other primers can be designed
by the skilled artisan, such as any fragment of the FCGR3A gene,
for use in the amplification step and especially a pair of primers
comprising a forward sequence and a reverse sequence wherein said
primers of said pair hybridize with a region of a FCGR3A gene and
allow amplification of at least a portion of the FCGR3A gene
containing codon 158. In a preferred embodiment, each pair of
primers comprises at least one primer that is complementary, and
overlaps with codon 158, and allows to discriminate between 158V
(gtt) and 158F (ttt). The amplification conditions may also be
adjusted by the skilled person, based on common general knowledge
and the guidance contained in the specification.
[0028] In a particular embodiment, the method of the present
invention thus comprises a PCR amplification of a portion of the
FCGR3a mRNA or gDNA with specific oligonucleotide primers, in the
cell or in the biological sample, said portion comprising codon
158, and a direct or indirect analysis of PCR products, e.g., by
electrophoresis, particularly Denaturing Gel Gradient
Electrophoresis (DGGE).
[0029] In an other particular embodiment, determining amino acid
residue at position 158 of Fc.gamma.RIIIa receptor comprises a step
of allele-specific restriction enzyme digestion. This can be done
by using restriction enzymes that cleave the coding sequence of a
particular allele (e.g., the 158V allele) and that do not cleave
the other allele (e.g., the 158F allele, or vice versa). Where such
allele-specific restriction enzyme sites are not present naturally
in the sequence, they may be introduced therein artificially, by
amplifying the nucleic acid with allele-specific amplification
primers containing such a site in their sequence. Upon
amplification, determining the presence of an allele may be carried
out by analyzing the digestion products, for instance by
electrophoresis. This technique also allows to discriminate
subjects that are homozygous or heterozygous for the selected
allele.
[0030] Examples of allele-specific amplification primers include
for instance SEQ ID NO:3. SEQ ID NO:3 introduces the first 3
nucleotides of the NlaIII site (5'-CATG-3'). Cleavage occurs after
G. This primer comprises 11 bases that do not hybridise with
FCGR3A, that extend the primer in order to facilitate
electrophoretic analysis of the amplification products) and 21
bases that hybridise to FCGR3A, except for nucleotide 31 (A) which
creates the restriction site.
[0031] In a further particular embodiment, determining amino acid
residue at position 158 of Fc.gamma.RIIIa receptor comprises a step
of hybridization of the FCGR3A receptor gene or RNA or a portion
thereof comprising the nucleotides encoding amino acid residue 158,
with a nucleic acid probe specific for the genotype Valine or
Phenylalanine, and determining the presence or absence of
hybrids.
[0032] It should be understood that the above methods can be used
either alone or in various combinations. Furthermore, other
techniques known to the skilled person may be used as well to
determine the FCGR3A158 genotype, such as any method employing
amplification (e.g. PCR), specific primers, specific probes,
migration, etc., typically quantitative RT-PCR, LCR (Ligase Chain
Reaction), TMA (Transcription Mediated Amplification), PCE (an
enzyme amplified immunoassay) and bDNA (branched DNA signal
amplification) assays.
[0033] In a preferred embodiment of this invention, determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
comprises: [0034] Obtaining genomic DNA from a biological sample,
[0035] Amplifying the Fc.gamma.RIIIa receptor gene or a portion
thereof comprising the nucleotides encoding amino acid residue 158,
and [0036] determining amino acid residue at position 158 of said
Fc.gamma.RIIIa receptor gene.
[0037] Amplification can be accomplished with any specific
technique such as PCR, including nested PCR, using specific primers
as described above. In a most preferred embodiment, determining
amino acid residue at position 158 is performed by allele-specific
restriction enzyme digestion. In that case, the method comprises:
[0038] Obtaining genomic DNA from a biological sample, [0039]
Amplifying the Fc.gamma.RIIIa receptor gene or a portion thereof
comprising the nucleotides encoding amino acid residue 158, [0040]
Introducing an allele-specific restriction site, [0041] Digesting
the nucleic acids with the enzyme specific for said restriction
site and, [0042] Analysing the digestion products, i.e., by
electrophoresis, the presence of digestion products being
indicative of the presence of the allele.
[0043] In an other particular embodiment, the genotype is
determined by a method comprising: total (or messenger) RNA
extraction from cell or biological sample or biological fluid in
vitro or ex vivo, optionally cDNA synthesis, (PCR) amplification
with FCGR3A-specific oligonucleotide primers, and analysis of PCR
products.
[0044] The method of this invention may also comprise determining
amino acid residue at position 158 of Fc.gamma.RIIIa receptor
directly by sequencing the Fc.gamma.RIIIa receptor polypeptide or a
portion thereof comprising amino acid residue 158 or by using
reagents specific for each allele of the Fc.gamma.RIIIa
polypeptide. This can be determined by any suitable technique known
to the skilled artisan, including by immuno-assay (ELISA, EIA, RIA,
etc.). This can be made using any affinity reagent specific for a
Fc.gamma.RIIIa158 polypeptide, more preferably any antibody or
fragment or derivative thereof. In a particular embodiment, the
Fc.gamma.RIIIa158 polypeptide is detected with an
anti-Fc.gamma.RIIIa158 antibody (or a fragment thereof) that
discriminates between Fc.gamma.RIIIa158V and Fc.gamma.RIIIa158F,
more preferably a monoclonal antibody. The antibody (or affinity
reagent) may be labelled by any suitable method (radioactivity,
fluorescence, enzymatic, chemical, etc.). Alternatively,
Fc.gamma.RIII158 antibody immune complexes may be revealed (and/or
quantified) using a second reagent (e.g., antibody), labelled, that
binds to the anti-Fc.gamma.RIIIa158 antibody, for instance.
[0045] The above methods are based on the genotyping of FCGR3A158
in a biological sample of the subject. The biological sample may be
any sample containing a FCGR3A gene or corresponding polypeptide,
particularly blood, bone marrow, lymph node or a fluid,
particularly blood or urine, that contains a FCGR3A158 gene or
polypeptide. Furthermore, because the FCGR3A 158 gene is generally
present within the cells, tissues or fluids mentioned above, the
method of this invention usually uses a sample treated to render
the gene or polypeptide available for detection or analysis.
Treatment may comprise any conventional fixation techniques, cell
lysis (mechanical or chemical or physical), or any other
conventional method used in immunohistology or biology, for
instance.
[0046] The method is particularly suited to determine the response
of a subject to an anti-tumor therapeutic antibody treatment. In
this regard, in a particular embodiment, the subject has a tumor
and the therapeutic antibody treatment aims at reducing the tumor
burden, particularly at depleting the tumor cells. More preferably,
the tumor is a lymphoma, such as more preferably a B lymphoma,
particularly a NHL. As indicated above, the antibody is preferably
an IgG1 or an IgG3, particularly an anti-CD20 IgG1 or IgG3, further
preferably a humanized antibody, for instance rituximab.
[0047] The invention also relates to a bispecific antibody, wherein
said bispecific antibody specifically binds CD16 and a tumor
antigen, for instance a CD20 antigen. The invention also
encompasses pharmaceutical compositions comprising such a
bispecific antibody and a pharmaceutically acceptable excipient or
adjuvant.
[0048] Further aspects and advantages of this invention will be
disclosed in the following examples, which should be regarded as
illustrative and not limiting the scope of this application.
FIGURE LEGENDS
[0049] FIG. 1: Adjusted KAPLAN-MEIER estimates of progression-free
survival after rituximab treatment according to Fc.gamma.R3a-158V/F
genotype (p=0.05). Patients carrying two "V" alleles (top line) had
a markedly improved and statistically significant progression free
survival relative to those carrying either "V/F" or "F/F" genotypes
(bottom line). For example, at the 20 month time point, .about.90%
of "V/V" patients were alive whereas only .about.55% of patients
with either the "V/F" or "F/F" genotypes survived. These levels
remained stable through the 30 month time point.
[0050] FIG. 2: Genetic organization of the human FCGR3A gene. The
FCGR3A 158V/F polymorphism is within Exon 4 at nucleotide position
4987.
[0051] FIG. 3: Amino acid sequences of human Fc.gamma.RIIIa158F
(SEQ ID NO:7)
[0052] FIGS. 4A-H: Nucleic acid sequence of human FCGR3A158F (SEQ
ID NO:8).
MATERIALS AND METHODS
Patients and Treatment
[0053] Clinical trial design, eligibility criteria and end-point
assessment have been previously reported..sup.5 In brief, patients
were eligible for inclusion in this study if they had previously
untreated follicular CD20 positive NHL according to the REAL
classification..sup.26 Patients were required to present with stage
II to IV disease according to Ann-Arbor classification and at least
one measurable disease site. All patients were required to have low
tumor burden according to the GELF criteria..sup.27 A total of four
375 mg/m.sup.2 doses of rituximab (Roche, Neuilly, France) were
administered by intravenous infusion (days 1, 8, 15, 22). The
management of infusion and adverse events has already been
reported..sup.5 The study protocol was approved by an ethics
committee, and all patients gave their informed consent.
Monitoring and Endpoints
[0054] Baseline evaluation included clinical examination, chest
X-ray, computed tomography (CT) of the chest, abdomen and pelvis,
and unilateral bone marrow biopsy. Response was assessed by an
independent panel of radiologists who reviewed all the CT scans of
the included patients. The primary efficacy endpoint was the
objective response rate, i.e the proportion of patients achieving
either complete remission (CR), unconfirmed CR (CRu) or partial
response (PR) according to the criteria recently proposed by an
international expert committee..sup.28 Clinical response was
evaluated at days 50 and 78. Only the maximum response was taken
into account and that assessment time point named M2. All patients
were evaluated for progression at one year (M12). Patients in CR or
CRu with disappearance of bone marrow infiltration at M2 and
reappearance of lymphoma cells in bone marrow at M12 were
considered "progressive"; patients in PR with negative bone marrow
biopsy at M2 and positive biopsy at M12 were considered in PR.
[0055] Molecular analysis of BCL2-JH gene rearrangement was
performed by PCR, as previously described,.sup.5 on a lymph node
obtained at diagnosis and on both peripheral blood and bone marrow
at diagnosis, M2 and M12.
FCGR3A-158V/F Genotyping
[0056] Out of the 50 patients included in the clinical trial, one
patient was excluded after histological review and DNA was not
available for two other patients. Forty seven patients were
therefore available for FCGR3A genotype analysis. All samples were
analysed in the same laboratory and DNA was extracted using
standard procedures including precautions to avoid
cross-contamination. DNA was isolated from peripheral blood (n=43),
bone marrow (n=3) or lymph node (n=1). Genotyping of FCGR3A-158V/F
polymorphism was performed as described by Koene et al.sup.22 with
a nested PCR followed by an allele-specific restriction enzyme
digestion. Briefly, two FCGR3A specific primers
(5'-ATATTTACAGAATGGCACAGG-3', SEQ ID NO: 1;
5'-GACTTGGTACCCAGGTTGAA-3', SEQ ID NO: 2) (Eurobio, Les Ulis,
France) were used to amplify a 1.2 kb fragment containing the
polymorphic site. The PCR assay was performed with 1.25 .mu.g of
genomic DNA, 200 ng of each primer, 200 .mu.mol/L of each dNTP (MBI
Fermentas, Vilnius, Lithuania) and 1 U of Taq DNA polymerase
(Promega, Charbonniere, France) as recommended by the manufacturer.
This first PCR consisted in 10 min at 95.degree. C., then 35 cycles
(each consisting in 3 steps at 95.degree. C. for 1 min, 57.degree.
C. for 1.5 min, 72.degree. C. for 1.5 min) and 8 min at 72.degree.
C. to achieve complete extension. The second PCR used primers
(5'-ATCAGATTCGATCCTACTTCTGCAGGGGGCAT-3' SEQ ID NO: 3;
5'-ACGTGCTGAGCTTGAGTGATGGTGATGTTCAC-3' SEQ ID NO: 4) (Eurobio)
amplifying a 94 bp fragment and creating a NlaIII restriction site
only in the FCGR3A-158V allele. This nested PCR was performed with
1 .mu.L of the amplified DNA, 150 ng of each primer, 200 .mu.mol/L
of each dNTP and 1 U of Taq DNA polymerase. The first cycle
consisted in 5 min at 95.degree. C. then 35 cycles (each consisting
in 3 steps at 95.degree. C. for 1 min, 64.degree. C. for 1 min,
72.degree. C. for 1 min) and 9.5 min at 72.degree. C. to complete
extension. The amplified DNA (10 .mu.L) was then digested with 10 U
of NlaIII (New England Biolabs, Hitchin, England) for 12 h at
37.degree. C. and separated by electrophoresis on a 8%
polyacrylamide gel. After staining with ethidium bromide, DNA bands
were visualized with UV light. For homozygous FCGR3A-158F patients,
only one undigested band (94 bp) was visible. Three bands (94 bp,
61 bp and 33 bp) were seen in heterozygous individuals whereas for
homozygous FCGR3A-158V patients, only two digested bands (61 bp and
33 bp) were obtained.
FCGR2A-131H/R Genotyping
[0057] Genotyping of FCGR2A-131H/R was done by PCR followed by an
allele-specific restriction enzyme digestion according to Liang et
al.sup.28. The sense primer (5'-GGAAAATCCCAGAAATTCTCGC-3' SEQ ID
NO: 5) (Eurobio) has been modified to create a BstUI restriction
site in case of R allele whereas the antisense primer
(5'-CAACAGCCTGACTACCTATTACGCGGG-3' SEQ ID NO: 6) (Eurobio) has been
modified to carry a second BstUI restriction site that served as an
internal control. PCR amplification was performed in a 50 .mu.L
reaction with 1.25 .mu.g genomic DNA, 170 ng of each primer, 200
.mu.mol/L of each dNTP, 0.5 U of Taq DNA polymerase, and the
manufacturer's buffer. The first cycle consisted of 3 minutes at
94.degree. C. followed by 35 cycles (each consisting in 3 steps at
94.degree. C. for 15 seconds, 55.degree. C. for 30 seconds,
72.degree. C. for 40 seconds) and 7 min at 72.degree. C. to
complete extension. The amplified DNA (7 .mu.L) were then digested
with 20 U of BstUI (New England Biolabs) for 12 h at 60.degree. C.
Further analysis was performed as described for FCGR3A genotyping.
The FCGR2A-131H and -131R alleles were visualized as a 337 bp and
316 bp DNA fragments, respectively.
Statistical Analysis
[0058] Clinical and biological characteristics as well as clinical
and molecular responses of the patients in the different genotypic
groups were compared using a Chi-squared test or by Fisher's exact
test when appropriated. A logistic regression analysis including:
sex, age (> or .ltoreq.60 years), number of extra-nodal sites
involved (.gtoreq. or <2), bone marrow involvement, BCL2-JH
rearrangement status at diagnosis and FCGR3A genotype was used to
identify independent prognostic variables influencing clinical and
molecular responses. Progression-free survival was calculated
according to the method of Kaplan and Meier.sup.29 and was measured
from the start of treatment until progression/relapse or death.
Comparison of the progression-free survival by FCGR3A genotype was
performed using the log-rank test. P<0.05 was considered as
statistically significant.
RESULTS
Clinical Response
[0059] Out of the 49 patients tested for the FCGR3A-158V/F
polymorphism, 10 (20%) and 17 (35%) were homozygous for FCGR3A-158V
and FCGR3A-158F, respectively, and 22 (45%) were heterozygous. The
three groups were not different in terms of sex, disease stage,
bone marrow involvement, number of extra-nodal sites involved or
presence of BCL2-JH rearrangement in peripheral blood and bone
marrow at diagnosis (Table 1). No difference was found when
homozygous FCGR3A-158V patients were compared with FCGR3A-158F
carriers (FCGR3A-158F homozygous and heterozygous patients) or when
homozygous FCGR3A-158F patients were compared with FCGR3A-158V
carriers (FCGR3A-158V homozygous and heterozygous patients). The
objective response rate at M2 was 100% (CR+CRu=40%), 70%
(CR+CRu=29%) and 64% (CR+CRu=18%) in FCGR3A-158V homozygous,
FCGR3A-158F homozygous and heterozygous patients respectively
(P=0.09). A significant difference in objective response rate was
observed between FCGR3A-158V homozygous patients and FCGR3A-158F
carriers with 67% (CR+CRu=23%) objective response rate for this
latter group (relative risk=1.5; 95% CI, 1.2-1.9; P=0.03) (Table
2). No difference was observed between FCGR3A-158F homozygous
patients and FCGR3A-158V carriers. At M12, the objective response
rate was 90% (CR+CRu=70%), 59% (CR+CRu=35%) and 45% (CR+CRu=32%) in
FCGR3A-158V homozygous, FCGR3A-158F homozygous and heterozygous
patients respectively (P=0.06). The difference in objective
response rate was still present one year after treatment between
FCGR3A-158V homozygous group and FCGR3A-158F carriers with 51%
(CR+CRu=33%) objective response rate for this latter group
(relative risk=1.7; 95% CI, 1.2-2.5; P=0.03). The logistic
regression analysis showed that the homozygous FCGR3A-158V genotype
was the only predictive factor for clinical response both at M2
(P=0.02) and at M12 (P=0.01). The progression-free survival at 3
years (median follow-up: 35 months; 31-41) (FIG. 1) was 56% in
FCGR3A-158V homozygous patients and 35% in FCGR3A-158F carriers
(ns). Out of the 45 patients analyzed for FCGR2A-131H/R
polymorphism, 9 (20%) and 13 (29%) were homozygous for FCGR2A-131R
and FCGR2A-131H, respectively, while 23 (51%) were heterozygous.
There was no difference in the characteristics at inclusion or
clinical response to rituximab treatment for these three groups or
for homozygous FCGR2A-131H patients and FCGR2A-131R carriers, or
for homozygous FCGR2A-131R patients and FCGR2A-131H carriers (data
not shown).
Molecular Response
[0060] At diagnosis, BCL2-JH rearrangement was detected in both
peripheral blood and in bone marrow in 30 (64%) patients, enabling
further follow-up. Twenty-five patients (six FCGR3A-158V homozygous
patients and 19 FCGR3A-158F carriers) and 23 patients (six
FCGR3A-158V homozygous patients and 17 FCGR3A-158F carriers) were
analysed for BCL2-JH rearrangement in both peripheral blood and
bone marrow at M2 and at M12 (Table 3). At M2, a cleaning of
BCL2-JH rearrangement was observed in 3/6 of the FCGR3A-158V
homozygous patients and in 5/19 of the FCGR3A-158F carriers (ns).
In contrast, the rate of BCL2-JH rearrangement cleaning at M12 was
higher (5/6) in the FCGR3A-158V homozygous patients than in the
FCGR3A-158F carriers (5/17) (relative risk=2.8; 95% CI, 1.2-6.4;
E=0.03). The logistic regression analysis showed that the
FCGR3A-158V homozygous genotype was the only factor associated with
a greater probability of exhibiting BCL2-JH rearrangement cleaning
at M12 (P=0.04). The single homozygous FCGR3A-158V patient still
presenting with BCL2-JH rearrangement in peripheral blood and bone
marrow at M12 was in CR 23 months after rituximab treatment. In
contrast, the molecular responses at M2 and M12 were not influenced
by the FCGR2A-131H/R polymorphism (data not shown).
DISCUSSION
[0061] Because of the increasing use of rituximab in B cell
lymphoproliferative malignancies, enhanced understanding of
treatment failures and of the mode of action of rituximab is
required. In this regard, we genotyped FCGR3A in follicular NHL
patients with well-defined clinical and laboratory characteristics
and treated with rituximab alone..sup.5 In particular, all the
patients included in this study had a low tumor burden NHL and a
molecular analysis of BCL2-JH at diagnosis and during follow-up.
The FCGR3A allele frequencies in this population were similar to
those of a general Caucasian population..sup.23,24 Our results show
an association between the FCGR3A genotype and the response to
rituximab. Indeed, homozygous FCGR3A-158V patients, who account for
one fifth of the population, had a greater probability of
experiencing clinical response, with 100% and 90% objective
response rates at M2 and M12, respectively. Moreover, five of the
six FCGR3A-158V homozygous patients analysed for BCL2-JH
rearrangement showed molecular response at M12, compared to 5 of
the 17 FCGR3A-158F carriers. FCGR3A-158V homozygosity was the only
factor associated with the clinical and molecular responses.
However, these higher clinical and molecular responses were still
unsufficient to significantly improve the progression-free survival
in homozygous FCGR3A-158V patients.
[0062] This is the first report of an easily assessable genetic
predictive factor for both clinical and molecular responses to
rituximab. However, the genetic association does not demonstrate
the mode of action of rituximab involves Fc.gamma.RIIIa. The
association observed between FCGR3A genotype and response to
rituximab might be due to another genetic polymorphism in linkage
disequilibrium. Those polymorphisms could be located in FCGR3A
itself like the triallelic FCGR3A-48L/H/R polymorphism.sup.31 or in
other Fc.gamma.R-coding genes, since FCGR3A is located on the long
arm of chromosome 1, which includes the three FCGR2 genes and
FCGR3B..sup.32 A linkage disequilibrium has been reported between
FCGR2A and FCGR3B..sup.33 However, the fact that FCGR3A-131H/R
polymorphism was not associated with a better response to rituximab
strongly supports the fact that a gene very close to FCGR3A or
FCGR3A itself is directly involved.
[0063] Several in vitro studies argue in favor of direct
involvement of FCGR3A-158V/F polymorphism. First, Koene et
al.sup.23 have shown that the previously reported differences in
IgG binding among the three Fc.gamma.RIIIa-48L/H/R isoforms.sup.31
are a consequence of the linked Fc.gamma.RIIIa-158V/F polymorphism
and several teams have demonstrated that NK cells from individuals
homozygous for the FCGR3A-158V allotype have a higher affinity for
human complexed IgG1 and are more cytotoxic towards IgG1-sensitized
targets..sup.23,24,34 Our present results establish that
FCGR3A-158V homozygous patients have a better response to
rituximab, which is probably due to a better in vivo binding of
that chimeric human IgG1 to Fc.gamma.RIIIa. Secondly, NK cell- and
macrophage-mediated ADCC is one of the mechanisms triggered by
anti-CD20 antibodies in vitro.sup.8,11,12 as well as in murine
models in vivo,.sup.17-19 and rituximab-mediated apoptosis is
amplified by Fc.gamma.R-expressing cells..sup.15,16 Out of all
Fc.gamma.R, Fc.gamma.RIIIa is the only receptor shared by NK cells
and macrophages. We thus postulate that FCGR3A-158V patients show a
better response to rituximab because they have better ADCC activity
against lymphoma cells. The fact that more than 50% of the
FCGR3A-158F carriers nonetheless present a clinical response to
rituximab could be explained by lower, but still sufficient, ADCC
activity or, more likely, by other mechanisms operating in vivo
such as complement-dependent cytotoxicity, complement-dependent
cell-mediated cytotoxicity.sup.11,13,14 and/or apoptosis..sup.15,16
ADCC could then be viewed as an additional mechanism in the
response to rituximab that is particularly effective in FCGR3A-158V
homozygous patients.
[0064] The in vitro studies suggest a "gene-dose" effect with a
level of IgG1 binding to NK cells from FCGR3A heterozygous donors
intermediate between that observed with NK cells from FCGR3A-158V
and FCGR3A-158F homozygotes.sup.23. However, the clinical response
of heterozygous patients appears similar to that of FCGR3A-158F
homozygous patients. Further studies with larger groups of patients
will be required to conclude against a "gene-dose" effect in
vivo.
[0065] Since Fc.gamma.RIIIa is strongly associated with a better
response to rituximab, it needs to be taken into account in the
development of new drugs targetting the CD20 antigen. For example,
it may be possible to use engineered rituximab to treat
FCGR3A-158F-carrier patients with B cell lymphomas. Indeed, by
modifying various residues in the IgG1 lower hinge region, Shields
et at have recently obtained IgG1 mutants which bind more strongly
to Fc.gamma.RIIIa-158F than native IgG1.sup.34.
[0066] Taken together, these results allow to set up new
therapeutic strategies against B lymphoproliferative disorders
based upon prior determination of the patients FCGR3A genotype.
Since this polymorphism has the same distribution in various ethnic
population, including blacks and Japanese, such a strategy may be
applied worldwide..sup.23,35,36 Furthermore, such a pharmacogenetic
approach may also be applied to other intact humanized IgG1
antibodies used in the treatment of B cell malignancies, such as
Campath-1H, or those used in the treatment of other malignancies,
such as trastuzumab (Herceptin.RTM.). Even more generally, this
approach may apply to other intact (humanized) therapeutic (IgG1)
antibodies developed to deplete target cells.
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High resolution mapping of the binding site on human IgG1 for Fc
.gamma. RI, Fc .gamma. RII, Fc .gamma. RIII, and FcRn and design of
IgG1 variants with improved binding to the Fc .gamma. R. J Biol
Chem. 2001; 276:6591-6604. [0101] 35. Leppers-van de Straat F G,
van der Pol W, Jansen M D, et al.: A novel PCR-based method for
direct Fc.gamma. receptor IIIa (CD16) allotyping. J Immunol
Methods. 2000; 242:127-132. [0102] 36. Lehrnbecher T, Foster C B,
Zhu S, et al.: Variant genotypes of the low-affinity Fc.gamma.
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TABLE-US-00003 [0102] TABLE 1 CHARACTERISTICS OF PATIENTS ACCORDING
TO THE FCGR3A-158V/F POLYMORPHISM FCGR3A- FCGR3A- FCGR3A- 158VV
158VF 158FF p* n (%) 10 (20%) 22 (45%) 17 (35%) Sex M 3 12 10 ns F
7 10 7 Disease stage II-III 3 6 6 ns IV 7 16 11 Bone marrow
involvement yes 7 16 9 ns no 3 6 8 Extra-nodal sites involved <2
8 20 13 ns .gtoreq.2 2 2 4 BCL2-JH rearrangement 8 12 11 ns in
peripheral blood BCL2-JH rearrangement 7 12 11 ns in bone marrow
*Satistical comparisons of the three groups of homozygous
FCGR3A-158V patients vs FCGR3A-158F carriers and of homozygous
FCGR3A-158F patients against FCGR3A-158V carriers.
TABLE-US-00004 TABLE 2 CLINICAL RESPONSE TO RITUXIMAB BY
FCGR3A-158V/F POLYMORPHISM. FCGR3A- FCGR3A-158F 158VV carriers p*
Clinical response at M2 Objective response 10 (100%) 26 (67%) 0.03
complete remission 3 7 complete remission 1 2 unconfirmed partial
response 6 17 No response 0 (0%) 13 (33%) no change 0 10
progressive disease 0 3 Clinical response at M12 Objective response
9 (90%) 20 (51%) 0.03 complete remission 6 11 complete remission 1
2 unconfirmed partial response 2 7 No response 1 (10%) 19 (49%) no
change 0 2 progressive disease 1 17 *Satistical comparison of
homozygous FCGR3A-158V patients against FCGR3A-158F carriers. Data
concerning the three genotype subgroups are given in the text.
TABLE-US-00005 TABLE 3 MOLECULAR RESPONSE TO RITUXIMAB AT M2 AND AT
M12 BY THE FCGR3A-158V/F POLYMORPHISM. FCGR3A- FCGR3A-158F 158VV
carriers p Molecular response at M2 ns Cleaning of BCL2-JH
rearrangement 3 5 Persistent BCL2-JH rearrangement 3 14 Molecular
response at M12 0.03 Cleaning of BCL2-JH rearrangement 5 5
Persistent BCL2-JH rearrangement 1 12
Sequence CWU 1
1
13121DNAArtificial SequenceDescription of Artificial Sequence
FCGR3A specific primer. 1atatttacag aatggcacag g 21220DNAArtificial
SequenceDescription of Artificial Sequence FCGR3A specific primer.
2gacttggtac ccaggttgaa 20332DNAArtificial SequenceDescription of
Artificial Sequence Amplification primer. 3atcagattcg atcctacttc
tgcagggggc at 32432DNAArtificial SequenceDescription of Artificial
Sequence Amplification primer. 4acgtgctgag cttgagtgat ggtgatgttc ac
32522DNAArtificial SequenceDescription of Artificial Sequence
Amplification sense primer. 5ggaaaatccc agaaattctc gc
22627DNAArtificial SequenceDescription of Artificial Sequence
Amplification antisense primer. 6caacagcctg actacctatt acgcggg
277254PRTHomo sapiensmisc_featureAmino acid sequence of human
FCGR3A158F. 7Met Trp Gln Leu Leu Leu Pro Thr Ala Leu Leu Leu Leu
Val Ser Ala 1 5 10 15 Gly Met Arg Thr Glu Asp Leu Pro Lys Ala Val
Val Phe Leu Glu Pro 20 25 30 Gln Trp Tyr Arg Val Leu Glu Lys Asp
Ser Val Thr Leu Lys Cys Gln 35 40 45 Gly Ala Tyr Ser Pro Glu Asp
Asn Ser Thr Gln Trp Phe His Asn Glu 50 55 60 Ser Leu Ile Ser Ser
Gln Ala Ser Ser Tyr Phe Ile Asp Ala Ala Thr 65 70 75 80 Val Asp Asp
Ser Gly Glu Tyr Arg Cys Gln Thr Asn Leu Ser Thr Leu 85 90 95 Ser
Asp Pro Val Gln Leu Glu Val His Ile Gly Trp Leu Leu Leu Gln 100 105
110 Ala Pro Arg Trp Val Phe Lys Glu Glu Asp Pro Ile His Leu Arg Cys
115 120 125 His Ser Trp Lys Asn Thr Ala Leu His Lys Val Thr Tyr Leu
Gln Asn 130 135 140 Gly Lys Gly Arg Lys Tyr Phe His His Asn Ser Asp
Phe Tyr Ile Pro 145 150 155 160 Lys Ala Thr Leu Lys Asp Ser Gly Ser
Tyr Phe Cys Arg Gly Leu Phe 165 170 175 Gly Ser Lys Asn Val Ser Ser
Glu Thr Val Asn Ile Thr Ile Thr Gln 180 185 190 Gly Leu Ala Val Ser
Thr Ile Ser Ser Phe Phe Pro Pro Gly Tyr Gln 195 200 205 Val Ser Phe
Cys Leu Val Met Val Leu Leu Phe Ala Val Asp Thr Gly 210 215 220 Leu
Tyr Phe Ser Val Lys Thr Asn Ile Arg Ser Ser Thr Arg Asp Trp 225 230
235 240 Lys Asp His Lys Phe Lys Trp Arg Lys Asp Pro Gln Asp Lys 245
250 822685DNAHomo sapiensmisc_featureNucleic acid sequence of human
FCGR3A158F. 8cagcctggct gacacagtga gacctcatct ctaaaaaaaa aagcaagcag
aatattttct 60taaaaggcaa ttatattcct tcttggccag gcccagtggc tcacacctgt
aatcccagca 120ctttgggagg ccgagatggg tggatcacct gaggtcagga
gttcgagacc agcctggcca 180acatggcgaa aacccgtgtc tactaaaaat
acaaaaatta gctgggcatg ggggcatatg 240cctgtaatcc cagctacttg
ggaggctgag acaggagaat cgcttgtacc cgggaggcag 300agattgcagt
gagccgagat catgccactg cactccagcc ttggcgacag agtgaggctt
360tgtctaaaaa aaaaaaggta ttttttgcct ctctgttggt accaattgtt
aaattctttg 420tggaccactg atgcttacca aaaaaaaaaa aaaaaaaagt
gggggcatca tatttcctct 480agttgacatt aagacacagt aatttagcca
gaggagatct tagcaaacat acagtccaca 540ctccactttc tcatttcatg
attgtagaga ctgagatcta gacaatttaa tcggtggtca 600ccctgggtga
catagctagg tctagagctc ctggtctcca ggtcagcatt tctttcttct
660tcattaaatg tcaagtttcc tcccctgttc attattagct ccttccagaa
agagagtttc 720ttatcttttt agtaggtact cagtaaatac caaggtattc
actaggatgc ctttggatga 780aggtaacaag ccctgactta aattggctta
aacagcaggg aaatttactt gaaattgtaa 840gaaatctggg ttggttgcgt
tagaagctca gtgatgtcac caagaccata ttctatccct 900ccactctgtc
ctccttggct atttggcatt gacctcagac tggctgcctt caaaatctta
960ggttttgcca gcagaaccta ggacaaaatg agcccttgtt catgtacagt
gggagagaga 1020gatcatctct cccaaacatg gcactcccct ctaccagatt
ggccctattt aggacaaagt 1080tccgtcttct cccacttaac caataaaagc
caggggaatg ctacaccctg agtggcttag 1140atcagtcaag atccacctct
gcatatgagg gtgattcctg aatagaatca aggttatatt 1200agaagggagg
gagagggatg gatatcaggc tagtacatca tattctattt gttgagttaa
1260ctgagtcata gcaattgttg agttggaaaa aactcagaac ctactgtgga
ttcaagttca 1320agaaatcatt ctttcctaca tacaacagca ttgctctgta
gccctgagct aagagagcat 1380cacgaaatac agtcttcttg ctgtttataa
tcgtaagcaa actcttggac ctgggagggg 1440atgaatggat aatgtctgtc
tgacttgctt ctttctagtt agtaccaact acctcccttc 1500ttcctgtgat
tgttcttaga ataggataaa aaatcttccc ttccctagat cttacagtct
1560ccccttcccc caggcctttc tatttttcag gattttactc taatcacacc
accgaagaat 1620caagaaatct ttaaagtgta ttagagtagc tagttgtggc
agcactaaaa cacggctgca 1680aattctttga cactctctcc atcaagaaat
gaggcctaca tcctctaccc ttgaatctgg 1740gtgggcttat aacttctggt
gattagacta cagcagaaag agaagctgta tagcttccta 1800aatgttataa
agtcttaagg atagctgcca gcaagacctt aggacaaaat gagcccttgt
1860tcacgtccag tgggagagag agagagagac cctctctccc aaatatggca
atcctctcta 1920cctataacat ttacataaat gttataggtt aaacgttcca
caacaaacta agtactattt 1980aacatcaaga ggaaaaagag acaggagaaa
gggttaataa gcctgttgat gaggatctaa 2040gaagaacaaa ggaggcctgg
tttgggcctg gctacccgtt ggtcttgcaa agaagagtct 2100gaggtggcag
agccttcagt ggcagatgcc aaattatcat catgagtgac tgcaagacag
2160tgtcagctaa gatagccatt tcaagctgct gaaggccttc tcttttagtc
gtggagtcct 2220gtgataagaa ctgaaagttg gaagagtgtg cttgtctgtg
gccttatttg gtcggatgca 2280gtctttatca tttttaattt gtttcttaga
acattttatc ttgttggcca aatgccctac 2340gaaatataaa atggagtctt
tttctaagat ggagttagtt atgtcaaggg tcctttatac 2400agtcttcatc
ctttttcctg gcatacaact cctaaaatcc ttagaatctc caaagtgatg
2460tcttttggtg tgctaatgag gtaactgatg gctggcagct cttaggtagc
ttcataacag 2520gggctgggca caagaaagat catggcaagg tcagaggatt
ggggctttca gctccaccct 2580ccaaactccc tctgggaagt ggagaggggc
tgaaggttga attgatcacc aatagccaat 2640gacttaatta atcattccta
agtaataaag ctcccataaa aacccaaaag gacagggttt 2700ggagatcctc
cagagagccg aacacagaga ggttcttgga gggtagtgca ccagagggca
2760tggaagctcc aagccccttc ccacaggtct tgccctatgt actctttact
tgtgtccttt 2820gtaatattct ttatcacaaa ctgataaatg taaatgtttc
cctgagtact gagagccact 2880ctagcaaatt aattgaaccc aagatgcagg
tggtgggaac ccccatttat aactggttgg 2940tcaaaagcac aggtaaaaca
acctggggct tcatcctgga gtatcagaag tgtcttgtga 3000gactgagccc
ttcacttgtg tcacctgatg ctatttccag ttagatagtg ttggaattca
3060attgaatttg agcagaagtc ccaatcccca gacctgtagt tgtcagtgac
ctcttaggaa 3120ctgggctgca cagcaggaag tgaggggcag gtggggagca
aagctttatc tgtatttaca 3180gtagatcccc atggctcaca tcaccgcctg
agctcctcct cctatcagat cagctgtggc 3240attaaattat cacaggagca
tgaaccctat tgtgaagtac gcatgcaagg gatctaggtt 3300gcattctcct
tatgagaatc taatgcctga tgacctggca ttgtctccca tcaccctaga
3360tgggactgtc tagttgcaag aaaacaagct cggggctccc cctgattcta
cattatggta 3420agttgtataa ttacttcatt aaatattaca ctgtaataat
aatagaaatg aagtgcacaa 3480taaatgtaat gcacttgaat catcctgaaa
ccatccccca cccccctacc cctgtccgag 3540gaaaaattgt cttccatgaa
gccaatccct ggtgccaaaa attttggaga ccactggatt 3600agaagacacc
cagttggtgc ccactgctga attgcttgct tgcttgcttg cttgcttgcc
3660agtggagaga aatccccaca tatctgttgt cagaaatgtg ttgtgagagc
atagtgggag 3720gaactgagtt tgttttttct acagttacag caataggtaa
ctggaattca actgctggac 3780tataccaaag actgccaggc cagcctacct
ttctcacagc cttcttgact acctgtcttg 3840gatgagctca ctgaaagccc
acataccttc attctagcat ttcctcagtc tggttgagct 3900gctttggagg
taatacaggt tgtaggactt ccctccactc ctgctcagga ccgttttcag
3960caggctaatc agacagcagt tggcactgag tacaactgga gaaatgttat
cagcactgaa 4020gactgctcca gctacaaatg cacagcgacc cacctcagct
ggacctttgg cattgcttgg 4080caatccttac aactgtttgg aattcttggt
aattcttgta catacaaaca gtcggctcct 4140tctcccatgc accacaatgg
ccattctcaa ctctggtgtt ctcaaacccc caccacaact 4200gttacccact
ctttctcgac aagtgtcttt gactcctcct taaccaagaa aatcaggacc
4260agcagatgtg gatggtcact caacatctga aaatggattt gcatatgtac
cccctcagct 4320cctgccttca gctcagagcg agaggtaatc cgtatccagt
tcacagccaa ctccctgtcc 4380atgtcccatt cccatctcct caggacccac
acttgcttct ctaggtgttc cgtccctgtt 4440aggcatccaa cttctcccac
cctgctggct tcttcccaaa gacctataac caagctcgta 4500tctttcactt
aaaagaaaac aaaaactccc attctcttgt aactaccttt gcagaattgt
4560gtctgaaaca gtgagagaga tctaacttaa ttgactccat cttgcttcta
acctccaagc 4620tgtctttcct cattcttggg cataggctga actaactttg
ggagaaactt agtttatagt 4680ttgtggttta aagcaaagat gataacagcc
ctttcccagg gcagacctcc tttttttctg 4740aagactagat tgtctttgta
ggactaacat tagccacaag attggaaatt atggtttagg 4800aatcatgcag
gtggaggcta caagattctg acccttccta agcactgatc ctaagatcgg
4860tgcttgagat attttgcaga ccctgcactt gatggatcac ctggcaacac
ccagatcaat 4920aaactggctc atctgatctt gtggtgccca cccaggaact
gactcagaac aagaagacag 4980cttcaacttc ctgtgatttc atccctgacc
aatcaacact cctggctcac tggcttcccc 5040tccaccaacc aagttgtcct
taaaaactct gctccccgaa tgctctggaa gactgatttg 5100agtaataata
aaactccagt ctctggctca gtcagctctg catgaattac tctttctcta
5160ttgcaattcc cctgtcttga tgaatcagct ctgtctagtt accatcctcc
acttctcctt 5220tcttattgtg tcacttaggg ctctgggtta taaacaactt
tatcagaatc cagatctttt 5280aagtagagga aaaagattta ttggatggaa
actagaggag gtgagcccat cccactgctg 5340tgatgactgg gacccaacca
tctccctctc ctagaagtga atctccctta tgagtaaaca 5400agtgtcactt
attcaggatt catctcagaa gagactctaa tgggccaaac ctcagttata
5460tgcctgtcct ctgtctgcct gtatcagtta gctagcactt ttataacaaa
gtaccacaga 5520ctgggtggct taaacaacaa aaatgtattt tcttacagtt
cttgaggctg caagtccaag 5580atcaaggtgt tgacagggtt ggtttctttt
aatttttttt ttaaaaattt tattttagat 5640ttaggggtat gcgtgcaggt
ttgctacata ggtaaactcc tatcacgggg gtttgttgca 5700cacattattt
catcacccat gtactaagcc tagttactca atagttattt tttccgatcc
5760tctccctctt cctaccctcc accctcaagt aggccccagt gtgtctgttg
ttcttccttt 5820gagtccatag ggttggtttc ttctgaggcc tctctccttg
gcttgtaggt gtccatcttc 5880tccctgtatg ggtctgtgtc ccaactaaca
aggacatcag tcatattgga ctagagccca 5940cctaatgatt ttattttaac
ttaattacct ctttaaaggc tctatatcca catatagtca 6000catcctgagg
tatagggggt tccacatgtg gacttcaaca tatgaactgg gagagacaaa
6060atttagtcct taatagtgcc ccaaagtggg gaaaaggaag atctggaccc
tcgggtttcc 6120atagtagaaa gcaatcactg ctttctatta agtactcaca
gtggggcttc tccagaaaga 6180atgatatgct aataagaagg ggaggaggaa
gtgatcctgg acagccagat gatatgtgca 6240ctattccttc ataatggaga
ttctgaagag gagaagcact tgactaaaca ctttttcatt 6300cctactccgt
cttcaaccaa aagctgtcaa acttctgttt ctcagcccca gcccctgaaa
6360ttgctcagga aaaggtcatt aatagttcct tgattgccat atttcaatca
aactcttgtt 6420tgaattcttt tctacaacat taatactgtt actgttgact
actccttcct tgaagatctg 6480ttcccactaa acttccttgt tccctcctct
tcagcccctc ctatacaaac tcctttgtca 6540gctatttttc ctgtgcacgc
ttcaaaaatg tttgcatgtc aagtttctgt cattgactct 6600ctcctcttct
cctctccctc tcaatccctc cttcctttcc ctcactgttt ccctttaatt
6660ctctctcaat actcttacag tttcagagat cttatcctta ctttatctta
acctaggatc 6720tctggatgga ttcaaataga gcttcttaaa ttaaaggaaa
cataatgtgt atatttgcat 6780cctttcttgg gagaaggccc aaaggttttt
atcagaggtt tgaaacctca accgtgttgg 6840tgcctcctaa attgtgtctt
ttgtcaagac ctgtcttctg agttccaggg ccatgtgtct 6900cactgcctac
tggaaatctt cacctgaaac cttcacagct acctcaaact caataacatc
6960aaaagctgaa atcattgtct ctccctccca aagcctgctc atcttcccat
ttttcttttg 7020tccatgaaag ctactgccat cctccttatc acccaaatta
gaaatccgag catcacccag 7080acctctcccc cttcatcacc cctcagccaa
tcactcacca agtcttgtcc atccttcctt 7140cctaacttct ctcctggatg
cttccattgc atatccactt tttaaacaga gtggctcttg 7200tctcaactag
actgttgaaa taatcttcca acttttccct ccaccttcca tctctctccc
7260ctctaactca ttccttggac tgctgtcaga gtacttttca taaaatataa
aacagatctt 7320gtgattcccc agtctaaagc ctttttatta gttcccatta
ccttttagaa taaaatatgt 7380actgttcatc ctgacacaca aaactcttcg
tgataaatac taattgagtg cctagtatgt 7440gcctgccctt gtgctaaatg
ttgagggtac aggggtaaac aaggtgaaca gcttccctgc 7500tctccaagac
ctttcagtcc acaaatgcaa tgagtttaca gaggagaagc acaagctcct
7560aaaggagttg gggtggggtt gggggtcaga acctaattta gaaaattgag
gaaggtctca 7620acctcccatc ttgcatttac aatagtaatc agcaggtgtg
gtaccaaata tggaaccaac 7680aattttatct gcattatctc atttaagcca
tgagtgccat tattgttagc ctcactttac 7740agataaggaa actgagggct
agaaggttaa ataagtggca gagttgggat ttcctccaga 7800ttcctgtgag
acccagacat cttaatcctt ttggaacctg tgcttctcct ttgtagtact
7860cactacactt gtggaactac atccaactac acttgtggaa ctacagccag
ctctgcaaac 7920atgacagtct acttcactcc aagtctttgc tcatgctgct
cctcttgcct ggaatgccta 7980tttctctcaa aaatcttcct gctgaatatt
ttgcgatcta attaaagtgt tctctcttcc 8040atgtacactc ctccctcaga
tagaattagc cactgtcttc tttgtgcata cacagcattt 8100cataaatact
gtcacagtcc ctctagcact tcaaatactt atctgatgtt ctccccctaa
8160gaaactgtaa gtcctagagg atgacaatca actgaattcc atagtcagaa
acttctgctg 8220tgcctggcct tccaatgaga aaaggagaga agaggagggg
aaggaagaaa aagggaagga 8280gaagaaagaa aagcaaacat gaagataaac
acttcaatat atgatatccc aagaccatct 8340acccttttgt aaaaattttg
cttttttttt ttccccccca agagtcaggg tctcactctg 8400tcgcccaggc
tagagtgcag tgccatgaac ataactcact gtagcctcta actccggggc
8460tcaagcaatc ctcctgcctc agcctcctgg gtagctggga ctacaggcat
gcaccaccac 8520atctggctat tattattatt actatattag tagagatggg
gtctttctat gttgcctagg 8580ctggtctcaa attcctggcc tcaagcaatt
cttccacctc acattggcct tccaaagtgc 8640tgggattaca ataagccacc
ataggccaaa attttgcatt ttatccatta ctgtaaaatt 8700aacccttaga
aatccaacaa cactcaattt gagaattgtt caacaaccac ttaatgaaaa
8760ccccctgaaa gcttcccatc ctgttgcagt ccctttctct cctcctgtgc
tctctcctct 8820tcttcctatc tagcccaccc ttttggcagc taagaattcc
tccctccatt ggagagccac 8880agaccaaaga ggagtcaaat aagaaaataa
gacctcaaag aaggaaaaca aagtgaaggc 8940cttgcatcag aagtcacgtg
gcagaaagcc acctggatat ctgaaaagaa gaaagaattg 9000agggatatcc
gctttttgcc tcagagacca tccttagccc tgaaggcttt gtttctgctt
9060taggtttccc agataagcat ccgaagtgct acagcaagga actttaagtt
tccagatact 9120tgtctggatt ttgcaaggcg tagatgagtc acttgagaag
gagaactgga atggctgcct 9180gggttcattt ccattgtcca atccaagggc
ctgtggagaa ggggctgctg caagactctg 9240tgtgtggcgg ggggaggggt
gggtacgtgg atggcaatgg gaggatcaat taactccacc 9300caggagccaa
atgaaacaca caaataaaaa acaaaacctg agtagtggtt tttaggtcat
9360tctggagtag aaagagcatt catttatagc aaaggttggc gggcacctgt
gtcagcccct 9420gcctccactc cacccctaac aagtatcagg tgcccacacg
ggcctgctgc tcgcctcctg 9480ggcttttcta agccaggtga gacctgtccc
agatgtccac gaatccactg ggggagtggc 9540actatcaagc agagtcatct
gattttctgc ctgggacctg gaccattgtg agagtaacca 9600acgtggggtt
acgggggaga atctggagag aagagaagag gttaacaacc ctcccacttc
9660ctggccaccc ccctccacct tttctggtaa ggagccctgg agccccggct
cctaggctga 9720cagaccagcc cagatccagt ggcccggagg ggcctgagct
aaatccgcag gacctgggta 9780acacgaggaa ggtaaagagt tcctgtcctc
gcccctcccc acccccacct tttctgtgat 9840cttttcagcc tttcgctggt
gacttgttct tccagggccc atttctctac cctacctggg 9900tttcttctaa
cctggaaatc taatgatcaa atcacactaa aaagtcagta gctcctgtgg
9960attacatatc ccaggagcat atagattttg aattttgaat tttgaaagaa
attctgcgtg 10020gagataatat tgaggcagag acactgctag tggtctgaag
atttgaaagg accactttct 10080gtgtgcaggc agggcctcag ctggagatag
atgggtctgg gcgaggcagg agagtgacaa 10140gttctgaggt gaaatgaagg
aagccctcag agaatgctcc tcccaccttg aatctcatcc 10200ccagggtctc
actgtcccat tcttggtgct gggtggatcc aaatccagga gatggggcaa
10260gcatcctggg atggctgagg gcacactctg gcagattctg tgtgtgtcct
cagatgctca 10320gccacagacc tttgagggag taaagggggc agacccaccc
accttgcctc caggctcttt 10380ccttcctggt cctgttctat ggtggggctc
ccttgccaga cttcagactg agaagtcaga 10440tgaagtttca agaaaaggaa
attggtgggt gacagagatg ggtggagggg ctggggaaag 10500gctgtttact
tcctcctgtc tagtcggttt ggtcccttta gggctccgga tatctttggt
10560gacttgtcca ctccagtgtg gcatcagggg ctggggaaag gctgtttact
tcctcctgtc 10620tagtcggttt ggtcccttta gggctccgga tatctttggt
gacttgtcca ctccagtgtg 10680gcatcatgtg gcagctgctc ctcccaactg
ctctgctact tctaggtaag tcagggtctc 10740cctggttgag ggagaagttt
gagatgcctt gggttcagca gagacccctt ttcaggctac 10800gaatgagact
cccacgaagg gatgggaccc ctcaccacat ctatagctgt ggattgagct
10860cctaggacaa gccaagatgg ggctagaaat gaggagaatg ctggttccaa
ttggggcata 10920ctcatgagtg aggccagtca cttcacccct ctgggtccca
gaatcactct gtggaaccaa 10980agagcttcga ctagatggtc cctagggtct
gtctctttca gtttgacatt ccagggttct 11040cctctatgat tttcaatttc
taccctttct tgtggggata tgggttgagg ctctttctgt 11100agcttggttc
agggaaattc aacctgtacc cttaatttgt gagtttgcac agggagcaag
11160gggtaaggga gcagtgttga aaatagggat ttgtgttgac agtggcgcaa
gaggcatgaa 11220cagtggagac cagagagcag gtagcaaggt ttccaccaga
aacatcctga ttcttgggaa 11280aattgggctc ctggggcaga ggagggcagg
ggagttttaa actcactcta tgttctaatc 11340actctgatct ctgcccctac
tcaatatttg atttatcttt tttcttgcag tttcagctgg 11400catgcggact
ggtgagtcag cttcatggtc ttggattgac ccagtggggc acatatgggg
11460acaaaggcca taagatattg ggaaatgctt gttgaatggg aaaatgctga
tgtggggtta 11520gcagggatag ttcctccaac acagcagaac ttggccctgt
gcttctctgg ccagctttcc 11580ttaagatact gaacaggcca aaaatggggc
caagatgctc taagactgag ccaccaagca 11640tgggtttgca atgagctcat
tctggctttg aggctccctg ggaatggcag tgtagagcct 11700gctcctctcc
ctgtcctcac cccacattat cttggctcct cagaagatct cccaaaggct
11760gtggtgttcc tggagcctca atggtacagg gtgctcgaga aggacagtgt
gactctgaag 11820tgccagggag cctactcccc tgaggacaat tccacacagt
ggtttcacaa tgagagcctc 11880atctcaagcc aggcctcgag ctacttcatt
gacgctgcca cagtcgacga cagtggagag 11940tacaggtgcc agacaaacct
ctccaccctc agtgacccgg tgcagctaga agtccatatc 12000ggtgagttga
tgaaggggaa gaggaaaatc accaataaag ggtgaaacaa agggtcctga
12060aatacttggt aagagccaga gatgatattc ttagagataa aagctaagat
gagatgatgt 12120gtggtcccac tgaatggtat cagagttgta gtcctagctc
taagtaggtc ttgggcaaaa 12180tgtcaaagcc tgtcagacag tagatatagg
actgctgcat tgcacaattc caagaatccc 12240catatggagt gcatacaatg
tgaatgtgtc atgtgaaggt taggccatgg catagatgct 12300caataatagt
tatttatata tttattttca ttttttttaa ttttattttt tgagacagag
12360tatcactctg tcacccaggc tggagtgcaa tgcggcaatc tcagctcact
gcaacttctg 12420cccccttggg
ttgtagtgat tctcctgcct cagcctcccg agtagctgag attacaggca
12480cccgccacca cgcccagcta atttttgtat ttttagtaga gacagggttt
caccatgttg 12540gtcagtctgg tctcaaactc ctgacctcag gtgattcacc
agccttggct tcccaaagtg 12600ctgggactac aggcgtgagc caccacacct
ggccaataat atttattgaa taaattaatg 12660aatttggtgt taggacctca
atctccttct cgctctcaga catgtaatgc cctaagccac 12720ctcccaaagc
aatcctagtg gcctagcatc atatctttct gtctcctcat caatgctata
12780ctcaaaccta taattaagca taaatttggt aatgtgatag ctcttccaat
agaggcagat 12840acatgttcag cctgcacatt aatcatgaca tgaaagttct
tgtgtactat taacagaata 12900tagacgtcag acacaggtag gagaaatatt
ttgaaggcag aggtctttcc tggtgtccct 12960acaatcttac cacataggct
ggtccctgca gtgtcgccct gcaaacctaa ctctacttcc 13020acggctgttc
cattcataca atgtttatgg gtggaacaag ctttggggga agaagggcat
13080aaggaggtgg atctgcaaga gagctccatg gaattgggcc tctgaaactg
atttttgtgg 13140ctctttggcc tctgacagta ccactcaact gacatggtct
tcactctcca gagctacaag 13200aagatatgtc catttctagc taggtaagag
atgtccacct acaaccaaat aaaatggggg 13260aattaccaag agaaagcaat
agaaaaatca agtctaagag ttactagttt gccttgaact 13320tggctctaga
aactggcttt agaagtctag ccaatcaagg ctatattaaa ctgtgaccat
13380gagaattagc ttcaccaggt aaacttctga gcatccttta atcctttagg
acccatttca 13440cttatgtcct cctctgagaa gcatttttta cttctttttt
tgtttgtttg tttgtgtttg 13500tttttgtttt tgtttttgag acagagtctc
tctctgtcac ccaagctgga gtgcagtggc 13560gcaatcttgg ctcactgcaa
cctccacctc ccgggttcaa gcaattctcc tgcctcagcc 13620tcccaagtag
ctgggactac aggtgcatgc caccacgccc ggctaatttt ttgtattttt
13680agtagagaca gggtttcgca gcgttagcca ggatggtctt gatctcctga
cttcatgatc 13740tgcccacctc ggcctcccaa agtactagga ttacagatgt
gagccaccgc gcccagcctg 13800cattttttac ttctttcagg cagaatttct
ttattccaat ctagtcagcc ccgcagtcct 13860ttattcttag cctgttgtag
cacttgtcat attgtattgt gattatttct gaatatttat 13920gtttctatgt
ctagactgta gattctttga ggctgagaac tatatgtccc atcatctggg
13980tatctccagt ccacagtgtg tcatacatag tgagtgcttg atgaaatatc
acttgaagga 14040atatacatat ggacattcac tgggtccatg acaggataga
ttcgaacaag aatgttcctc 14100caaaggccac cagactatat actaaccatg
actttatgct aataatgatt catctctctg 14160ctgaaaaagt aagtggatag
ataggcacat ggcttctttt gataaatgat atctcttaat 14220aggtaatgaa
gattactttc tgtttggcaa atctttgtgg tagagaatca tgaccaacac
14280acgtcctacc aattttgttt agcatcaggt agtagatttt ttaaattata
gtaattcaag 14340ctgagaatgt agatttaaaa aataaaatta ttgtaaattt
tgttttgttc ttattacaaa 14400agtcatttgg ggtcaatttc aaaaatatat
aaaagtaaac aggagaaatt taaaatgtcc 14460ttcagtccca ctccttcaga
gaaaacccct gttaatatgt aagtgcatat ccttcttttt 14520tctgtgcata
atacttttta aaatatttga agtattatgc ttttttaact taaaattgtc
14580tcatgaatat tttcttatgc cattataata cttacctata acatcattat
tttttaatta 14640ttcaggccct ttcccgacca tgacctcatg ttctctcttt
gtgaagtctg attacttggt 14700gacatgatcg tgagaataag ctctggcgat
ataagaattt cctctcttga aggccatgct 14760cagtaaatta cttggtgaca
tgatcgtgag aataagctct ggcgatacaa gaatttcctc 14820tcttgaaggc
catgctcagt aataaagttg gtctcaccga ggccctgtga caccttagaa
14880accacgaatt gccaggctga gcaataccag tcccgccctt cccctccctg
gtgtttacat 14940tgagttctcc ttcacaattt ctgcagccac tccgtggcca
ccgtcacctt attcctgact 15000gccacaagag tctttcaata ttcctttgat
tgcctattcc ttctgaaatc taccttttcc 15060tctaataggg caattcatca
ttttcaaatg caatttttac tctgatctag aacttactgt 15120gaatccttgt
cacctgccac agcaaatcta agtctagcac ttaaggatcc tgcagatatg
15180ctcatcgttg cttctcactt acctcattgc ttagtccctc tgctctaacc
ctgtgtgttg 15240atcacatgtg tgtgtgtccc tcttccccat tagacaaagg
tcttggtatg acttcagttc 15300tcttgcaggg ccccatcagc tcttccccaa
agggagctat gcagggttga ctcccaatct 15360ggctttccct tatgtctcag
gatctgggtg gtacgtggcc ccttcacaaa gctctgcact 15420gagagctgag
gcctcccggg cctggggtgt ctgtgtcttt caggctggct gttgctccag
15480gcccctcggt gggtgttcaa ggaggaagac cctattcacc tgaggtgtca
cagctggaag 15540aacactgctc tgcataaggt cacatattta cagaatggca
aaggcaggaa gtattttcat 15600cataattctg acttctacat tccaaaagcc
acactcaaag acagcggctc ctacttctgc 15660agggggcttt ttgggagtaa
aaatgtgtct tcagagactg tgaacatcac catcactcaa 15720ggtgagacat
gtgccaccct ggaatgccca gggacgcctg tgtgtggaac ctgcaatcac
15780actgggaagt tgagttggga ggagattcct gattcttaca cgcacttctt
catatgtggt 15840tccctcctgg tgatcaccag gaggtcccca aaagtccctg
attgcagggt aggtttgcag 15900ctctgtttca gtccattctt ttggggtagc
taggaggtgt cattcactct gcagcatgat 15960ggcaggagca gaagccacat
ctcctcccca ataaatacct ctgtctttcc ttacgctaat 16020cacacccacg
gtgtcatatg ttcctatcgt gctggcctcc ttcttatcca agccttttag
16080ccacgatcca aactggcagg agcccctcat cccctcacag aaagagccca
gaacctgggt 16140tctggccctg cagctaatta accatctgac cagaggtgag
ccacttagtc tctctgaacc 16200ccaatttctt cttccgtaac aaaaataagc
tgacatttat tgggcacctt tcagtgtgct 16260agactctgtg ctaaacaatt
ctttacatgc acctggtttg actatcacag tagaccttca 16320caacatgaga
taggtaatat tccattttac agatgaagta accgaggtgc aaaaataaat
16380aaataagttt ccctaaggtc acatcaaaga cttcaaagcc tgtatattta
accagtaagt 16440aaaagatttg aacaagcact aatatcctat gatcccatta
agtcatccac aaaacatctc 16500taggttctgt agcaccagcc tccagaatca
gagctctaga gtggtgtgcc tggactttcc 16560agtttcacag aacttctatc
tgtaactagc ccaagacata aattgtaaac aatttgcatg 16620tagaaaggca
gcaaaacacc ttttgagatt ttgacactac aatgccataa tttgtacaaa
16680aataatttca tgacacttta aactgaaagt aaatactccc aagtggttag
ggaaagagag 16740caaataaagc aaatggggta acatgtaaac aatgagtgga
tctgggtaaa ggatatacga 16800gattaaacta ttctggtcat ttttttttta
agtttggaaa tatatcaaaa tcaagagttt 16860aaaaaattga aatgcaaaat
caacaaattt gtcccagttt ctagaccata gcattgtctg 16920acaatttctt
aactgtcaca caaaacccag cttacaacct aacttgttaa cgctccctgt
16980cacatctctg tcaaacaagc aggagccttt gctcagtgtt tggtgagctg
tcctctgctc 17040agatagcact aagatcagga accaatggga ggaagcaata
ctttccccca gacttcccca 17100ccattcctac cacttgcctg ttggctgttg
tcaaagactt tctactggtg acctcactgt 17160ttgttccaaa tatctgcctt
agtgactgtc attttttttc atctctccac ttctcctaat 17220aggtttggca
gtgtcaacca tctcatcatt ctttccacct gggtaccaag tctctttctg
17280cttggtgatg gtactccttt ttgcagtgga cacaggacta tatttctctg
tgaagacaaa 17340cattcgaagc tcaacaagag actggaagga ccataaattt
aaatggagaa aggaccctca 17400agacaaatga cccccatccc atgggggtaa
taagagcagt agcagcagca tctctgaaca 17460tttctctgga tttgcaaccc
catcatcctc aggcctctct acaagcagca ggaaacatag 17520aactcagagc
cagatccctt atccaactct cgacttttcc ttggtctcca gtggaaggga
17580aaagcccatg atcttcaagc agggaagccc cagtgagtag ctgcattcct
agaaattgaa 17640gtttcagagc tacacaaaca ctttttctgt cccaaccgtt
ccctcacagc aaagcaacaa 17700tacaggctag ggatggtaat cctttaaaca
tacaaaaatt gctcgtgtta taaattaccc 17760agtttagagg ggaaaaaaaa
acaattattc ctaaataaat ggataagtag aattaatggt 17820tgaggcagga
ccatacagag tgtgggaact gctggggatc tagggaattc agtgggacca
17880atgaaagcat ggctgagaaa tagcaggtag tccaggatag tctaagggag
gtgttcccat 17940ctgagcccag agataagggt gtcttcctag aacattagcc
gtagtggaat taacaggaaa 18000tcatgagggt gacgtagaat tgagtcttcc
aggggactct atcagaactg gaccatctcc 18060aagtatataa cgatgagtcc
tcttaatgct aggagtagaa aatggtccta ggaaggggac 18120tgaggattgc
ggtggggggt ggggtggaaa agaaagtaca gaacaaaccc tgtgtcactg
18180tcccaagttg ctaagtgaac agaactatct cagcatcaga atgagaaagc
ctgagaagaa 18240agaaccaacc acaagcacac aggaaggaaa gcgcaggagg
tgaaaatgct ttcttggcca 18300gggtagtaag aattagaggt taatgcaggg
actgtaaaac caccttttct gcttcaatat 18360ctaattcctg tgtagctttg
ttcattgcat ttattaaaca aatgttgtat aaccaatact 18420aaatgtacta
ctgagcttcg ctgagttaag ttatgaaact ttcaaatcct tcatcatgtc
18480agttccaatg aggtggggat ggagaagaca attgttgctt atgaaagaaa
gctttagctg 18540tctctgtttt gtaagcttta agcgcaacat ttcttggttc
caataaagca ttttacaaga 18600tcttgcatgc tactcttaga tagaagatgg
gaaaaccatg gtaataaaat atgaatgata 18660aaattctttc ttcttccctt
tgtccaacat tgtaacagag attggtttgg attggtaaga 18720aacaccccct
cctcccagca accatctcac cacaactcat ataaattagc cagcttgctt
18780tccaaatctt gctgagacaa ttgggctaag gaggattctt atgggaagta
tgggatagga 18840gggtgaataa gcattagaga tcgttttaga gcattggggc
agataggaga aggcacagct 18900acacaggagg tagaggcctg ggcagaggta
gagggtcagc ctgattgtat gaattatgag 18960ctatatacca agacgattca
agctagattg catacataaa tattacataa gattccgaca 19020cgacacaggt
gcatttggaa accttggaca ttcaactcac atttatttac tacctacaat
19080gtgcaagctt gagttcaggt gctgaagata ccagatgaac aacacagggt
cattccctgg 19140agaagcttta tttctagtga gaaaaacagt taaataggaa
gagaatgaag aaagggctgc 19200agaaaagagg cttgatttgg ggggtgtggt
catgaaggat gagtaggagt tcgccaggca 19260aagaagagaa gaaaagccca
aggttcatag gcaaagattc aaaaaccaga gtgtgagttc 19320aagaaagcag
tttggttctg tgtcggtgag ggagaggaaa gagtttcagg gccagatcat
19380gaagggcatt accttccaaa ctaaggagat cgtatcagac cctgcaatac
attgagagag 19440tttaagcaga ccaggtttgt accgtatagt attttagaag
gattctctcg caactacttg 19500atggatggac gggacaggag agttgaagac
cagaagccaa atagggcagc aaggcaggat 19560gcagtaaccc aaagggagca
atgaggaagt aactggcggt gaggctggag aggaaggtgc 19620ttaatcaaca
aggtatttag gaggccgact ctccaagaat tggcagccag cagtacacgg
19680cgtgactaag gaccaggttc cacacatagt gcccgttttc tgagttagga
aatagaaagg 19740caaggcaggt acaggtttgg tggaaagaca aacaattcgt
tttggtatta ttagtactta 19800cttcctttgg tcagtaaatt ttcttaaagt
gtcagtttcc ataacgtaat tgccgtggtt 19860aagcagctaa gagttatcac
tacaacccta gtcggaaaaa ccaaatacct caaaattacc 19920cgtacagcac
taaggcagaa gaggacattg ggaaccacac aacgcggagg tctgctacca
19980gagctccctg cggttagcac cgcggctggt tttgagcgcc aaggccccag
cgctcccagc 20040ggatagcatc gcacgcagtt ttttcagtca aagtttcaaa
aacccagggt tcacaaaatg 20100cgacttccgt ccctgggtgg gatcgaacca
ccaacctttc ggttaacagc cgaacgcgct 20160aaccgattgc gccacagaga
cgggcgttgg cgattttggc tgccaagtca cttcactgaa 20220gaaaaaatgc
tcagcactca cgtctccaaa aaaattgagg ttgatttgaa accagtgaca
20280caattagctt tccgtgcttc agggcgcggc tcatagccct gagcgaggca
ggtctttttt 20340ctgcgctagc acttgcctag atctggagca ggactcagct
tccagcagaa gaggttgaga 20400aaaggagagc agaagagaat gcaggaacga
agggtcttcg gggaatccaa aatggatgct 20460ctctgtgggt tcgggggttc
cgttgatttt ggtcagagaa gtacgacgat aagctttttt 20520tgctgatgta
gacaacttat gtatgcatgt gcacacgttt agtgctgact cataataagc
20580ttattatcgt gagcattaaa aatattttct ttcaggtcca atcacgtcca
gcaaaatgtg 20640atgtctaagt aagtgagttt tgtgttacaa aattagtctt
caacccacgc tgttttgaaa 20700ggtttctacc ggcatattag acatgcagac
agaacacgga gcttaaaaag cctgtaacat 20760tccaattaat ggtattcagc
ttggaaataa aaaatatttt ttaaaaaatg cgtgcaactt 20820aaggactttc
atgctgacat atccagatcc aaatatctga ggacagagac ccctaattcc
20880accaccatcg acctagggaa cctcgtcagt gctgggtcta aaaaggcttt
ttttttttct 20940ttaattcata tgtatatata ctttattcat atatatatat
actttaagtt ctaggctaca 21000tgtgcacaag gtgcaggttc gttacatata
catgtgccat gttggtgtgc tgcacccatt 21060aactcgtcat ctacattagg
tgtttctcct aatgttatcc ctccctcctt cccccaccca 21120cgacaggtcc
cggtgtgtga tgttccctac catgcacacg tatgtttatt gtggaactat
21180tcacaatagc aaagacttgg aaccaaccca aatgtccatc aatgatagac
tggattaaga 21240aaatgtggca catatacact atggaatact atgcagccat
aaaaaaggat gagttcatgt 21300cctttgtagg gacatagatg aagctggaaa
ccatcagtct gaacaaacta tcacaaggac 21360agaaaatcag acaccgcatg
ttctcactca taggtgggaa ttgaacaata agaacacttg 21420gacgaaagcc
attttctata ttgcccaaaa accagggtct ctccatagcc tccacacaga
21480atctcctttc tttctgccct gccatcctct gtcatcagtg ggctccagtt
taggagcagg 21540tggaagtttt caatgatgtt cagtgaaatg agaagacatg
caaacataga tatgtatatg 21600cagaaattat atatgcatat atgtttatat
gtacacagta tcatatgtat aataaataag 21660taaataaata aataaatttg
ccaaatgatc tttaaactag agtcatttat tttttttatt 21720aatttttttt
tttgagatgg agtcttgctc tgtcgcccag gctggagtgc agtggcgcaa
21780tcttggctca ctgcaacctc cacctcccac attcaagcaa ttctcctgtc
tcagcctcct 21840gagtagctga gattacagtc atgggccacc atgcccggct
aatttttgta tttttttttt 21900tttttttttg agacagagtc tcgctgtcgc
ccaggttgga gtgcagtggc gcgatctcgg 21960ctcactgcag gctccgcccc
ccgggattca cgccattctc ctgcctcagc ctcctgagta 22020gctgggacta
caggcacctg ccacctcgcc cggctaattt ttttgtattt ttggtagaga
22080tgggctttcg ctatgttggc caggctggtc tcaaactcct gacctcaggt
gatcctcctg 22140cctcagcctc ccaaactgct gggattacag gtgagagcca
ctgtaccagg cctagagtca 22200tttcttttat actttaaatt tttgtctctg
ttcttttgct cagacctgtg gagctggcaa 22260tatgggcaag tgtcatggac
tgtctactgc caggaagctc cattgtcacc gacaggatca 22320gaagtggcat
ggtaaatggt acaagaaagc ccattcgggc acagtcctga agaccagcct
22380ttttggaggt gcttctcatg caaagggaat tgggctggaa aaagtaggga
ttggagccaa 22440atagcccagc tctgccactg agaagtgtgc cagggccaag
ctgatcatcc agcataagct 22500agatgctgtg gtctccactg gcacagctga
tcctcttgtt acaggatgga ggctgtgagg 22560cagatgagag aacagcaaga
aaatcacagc ctttgtacct gatgatgatt gcttgaattt 22620tattgaaaaa
aatgatgaag ttctgtatca ggggaaccag cacccaatat ttcaatgtag 22680gttct
22685945DNAArtificial sequenceFCGR3A gene 158F allele 9tcc tac ttc
tgc agg ggg ctt ttt ggg agt aaa aat gtg tct tca 45Ser Tyr Phe Cys
Arg Gly Leu Phe Gly Ser Lys Asn Val Ser Ser 1 5 10 15
1045DNAArtificial sequenceFCGR3A gene 158V allele 10tcc tac ttc tgc
agg ggg ctt gtt ggg agt aaa aat gtg tct tca 45Ser Tyr Phe Cys Arg
Gly Leu Val Gly Ser Lys Asn Val Ser Ser 1 5 10 15 11887DNAHomo
sapiensmisc_featurecDNA sequence of human FCGR3A158F 11tctttggtga
cttgtccact ccagtgtggc atcatgtggc agctgctcct cccaactgct 60ctgctacttc
tagtttcagc tggcatgcgg actgaagatc tcccaaaggc tgtggtgttc
120ctggagcctc aatggtacag ggtgctcgag aaggacagtg tgactctgaa
gtgccaggga 180gcctactccc ctgaggacaa ttccacacag tggtttcaca
atgagagcct catctcaagc 240caggcctcga gctacttcat tgacgctgcc
acagtcgacg acagtggaga gtacaggtgc 300cagacaaacc tctccaccct
cagtgacccg gtgcagctag aagtccatat cggctggctg 360ttgctccagg
cccctcggtg ggtgttcaag gaggaagacc ctattcacct gaggtgtcac
420agctggaaga acactgctct gcataaggtc acatatttac agaatggcaa
aggcaggaag 480tattttcatc ataattctga cttctacatt ccaaaagcca
cactcaaaga cagcggctcc 540tacttctgca gggggctttt tgggagtaaa
aatgtgtctt cagagactgt gaacatcacc 600atcactcaag gtttggcagt
gtcaaccatc tcatcattct ttccacctgg gtaccaagtc 660tctttctgct
tggtgatggt actccttttt gcagtggaca caggactata tttctctgtg
720aagacaaaca ttcgaagctc aacaagagac tggaaggacc ataaatttaa
atggagaaag 780gaccctcaag acaaatgacc cccatcccat gggggtaata
agagcagtag cagcagcatc 840tctgaacatt tctctggatt tgcaacccca
tcatcctcag gcctctc 8871215PRTArtificial SequenceAmino acid sequence
of FCGR3A gene 158F allele 12Ser Tyr Phe Cys Arg Gly Leu Phe Gly
Ser Lys Asn Val Ser Ser 1 5 10 15 1315PRTArtificial SequenceAmino
acid sequence of FCGR3A gene 158V allele 13Ser Tyr Phe Cys Arg Gly
Leu Val Gly Ser Lys Asn Val Ser Ser 1 5 10 15
* * * * *