U.S. patent application number 14/464619 was filed with the patent office on 2014-12-04 for modulation of replicative fitness by deoptimization of synonymous codons. This patent application is currently assigned to The Government of the United States of America as represented by the Secretary of the Department of. The applicant listed for this patent is The Government of the United States of America as represented by the Secretary of the Department of, The Government of the United States of America as represented by the Secretary of the Department of. Invention is credited to Cara Carthel Burns, Raymond Campagnoli, Olen M. Kew, Jacqueline Quay, Jing Shaw.
Application Number | 20140356390 14/464619 |
Document ID | / |
Family ID | 35636708 |
Filed Date | 2014-12-04 |
United States Patent Application | 20140356390 |
Kind Code | A1 |
Kew; Olen M. ; et al. | December 4, 2014 |
Methods of producing a pathogen with reduced replicative fitness are disclosed, as are attenuated pathogens produced using the methods. In particular examples, the method includes deoptimizing one or more codons in a coding sequence, thereby reducing the replicative fitness of the pathogen. Methods of using the attenuated pathogens as immunogenic compositions are also disclosed.
Inventors: | Kew; Olen M.; (Alpharetta, GA) ; Burns; Cara Carthel; (Avondale Estates, GA) ; Shaw; Jing; (Decatur, GA) ; Campagnoli; Raymond; (Decatur, GA) ; Quay; Jacqueline; (Chapel Hill, NC) | ||||||||||
Applicant: |
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Assignee: | The Government of the United States
of America as represented by the Secretary of the Department
of |
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Family ID: | 35636708 | ||||||||||
Appl. No.: | 14/464619 | ||||||||||
Filed: | August 20, 2014 |
Application Number | Filing Date | Patent Number | ||
---|---|---|---|---|
11576941 | Nov 19, 2007 | 8846051 | ||
PCT/US2005/036241 | Oct 7, 2005 | |||
14464619 | ||||
60617545 | Oct 8, 2004 | |||
Current U.S. Class: | 424/190.1 ; 435/252.3; 435/471 |
Current CPC Class: | C12N 2760/18562 20130101; C07K 14/245 20130101; C12N 2710/16162 20130101; C12N 2770/32762 20130101; A61K 2039/522 20130101; C12N 15/67 20130101; A61P 37/00 20180101; C12N 2710/16762 20130101; C12N 2770/20062 20130101; C12N 2760/18462 20130101; A61K 39/0258 20130101; C12N 2770/24162 20130101; A61K 2039/5254 20130101; C12N 2770/32162 20130101; C12N 2760/16162 20130101; C12N 2770/36262 20130101; Y02A 50/30 20180101; A61K 39/00 20130101; C12N 2710/16662 20130101; C12N 7/00 20130101 |
Class at Publication: | 424/190.1 ; 435/471; 435/252.3 |
International Class: | A61K 39/108 20060101 A61K039/108; C12N 15/67 20060101 C12N015/67 |
Sequence CWU 1
1
70167DNAArtificialprimer 1cctaagcttt tttttttttt tttttttttt
tttttttccc cgaattaaag aaaaatttac 60ccctaca 67248DNAArtificialprimer
2gtagtcgact aatacgactc actataggtt aaaacagctc tggggttg
4832745DNAHuman poliovirus 2CDS(109)..(2745) 3gagtgttgtg tcaggtatac
aactgtttgt tggaaccact gtgttagctt tacttctcat 60ttaaccaatt aatcaaaaac
aatacgagga taaaacaaca atactaca atg ggc gcc 117 Met Gly Ala 1 caa
gtt tca tca cag aaa gtt gga gcc cac gaa aat tca aac aga gcc 165Gln
Val Ser Ser Gln Lys Val Gly Ala His Glu Asn Ser Asn Arg Ala 5 10 15
tat ggc ggg tcc acc atc aat tac act aca atc aat tac tat agg gac
213Tyr Gly Gly Ser Thr Ile Asn Tyr Thr Thr Ile Asn Tyr Tyr Arg Asp
20 25 30 35 tct gca agc aat gca gca agc aag caa gat ttt gca caa gat
ccg tcc 261Ser Ala Ser Asn Ala Ala Ser Lys Gln Asp Phe Ala Gln Asp
Pro Ser 40 45 50 aag ttc acc gaa ccc att aag gac gtc ctt att aag
acc gct ccc atg 309Lys Phe Thr Glu Pro Ile Lys Asp Val Leu Ile Lys
Thr Ala Pro Met 55 60 65 cta aac tcc cca aac att gag gcg tgt ggt
tat agt gac agg gta atg 357Leu Asn Ser Pro Asn Ile Glu Ala Cys Gly
Tyr Ser Asp Arg Val Met 70 75 80 cag cta act ctg ggc aat tca acg
atc acc acc caa gaa gcg gcc aat 405Gln Leu Thr Leu Gly Asn Ser Thr
Ile Thr Thr Gln Glu Ala Ala Asn 85 90 95 tct gtt gtt gcc tac ggt
aga tgg cct gaa tac atc aga gat acc gag 453Ser Val Val Ala Tyr Gly
Arg Trp Pro Glu Tyr Ile Arg Asp Thr Glu 100 105 110 115 gca aat cct
gta gac caa cca acc gag ccc gat gta gcc gcg tgc agg 501Ala Asn Pro
Val Asp Gln Pro Thr Glu Pro Asp Val Ala Ala Cys Arg 120 125 130 ttc
tac aca tta gat acc gtc act tgg cgc aag gag tcc aga ggg tgg 549Phe
Tyr Thr Leu Asp Thr Val Thr Trp Arg Lys Glu Ser Arg Gly Trp 135 140
145 tgg tgg aaa cta cca gac gct tta aaa gac atg ggg tta ttt ggt caa
597Trp Trp Lys Leu Pro Asp Ala Leu Lys Asp Met Gly Leu Phe Gly Gln
150 155 160 aac atg ttt tat cac tat ctt ggg agg gct ggc tac aca gtg
cac gta 645Asn Met Phe Tyr His Tyr Leu Gly Arg Ala Gly Tyr Thr Val
His Val 165 170 175 cag tgc aat gct tca aag ttt cat caa gga gct cta
ggg gtg ttt gca 693Gln Cys Asn Ala Ser Lys Phe His Gln Gly Ala Leu
Gly Val Phe Ala 180 185 190 195 gtt cca gaa atg tgt tta gct ggt gat
agc aca act cac atg ttc aca 741Val Pro Glu Met Cys Leu Ala Gly Asp
Ser Thr Thr His Met Phe Thr 200 205 210 aag tac gag aat gcg aat cca
ggc gaa aaa gga ggt gaa ttc aaa ggg 789Lys Tyr Glu Asn Ala Asn Pro
Gly Glu Lys Gly Gly Glu Phe Lys Gly 215 220 225 agt ttc acc ctt gat
acc aac gcc act aac cct gca cgg aac ttc tgc 837Ser Phe Thr Leu Asp
Thr Asn Ala Thr Asn Pro Ala Arg Asn Phe Cys 230 235 240 cca gtt gat
tac ctc ttc ggg agt gga gtg ctg gta ggg aat gca ttt 885Pro Val Asp
Tyr Leu Phe Gly Ser Gly Val Leu Val Gly Asn Ala Phe 245 250 255 gtt
tat cca cat caa ata ata aac ctg cgc act aac aac tgt gct acg 933Val
Tyr Pro His Gln Ile Ile Asn Leu Arg Thr Asn Asn Cys Ala Thr 260 265
270 275 cta gta ttg ccc tat gta aac tca ctc tca ata gat agc atg aca
aag 981Leu Val Leu Pro Tyr Val Asn Ser Leu Ser Ile Asp Ser Met Thr
Lys 280 285 290 cac aac aac tgg ggg atc gct atc ctc ccc ctg gcg cca
cta gac ttt 1029His Asn Asn Trp Gly Ile Ala Ile Leu Pro Leu Ala Pro
Leu Asp Phe 295 300 305 gcc act gaa tct tcc act gag ata ccc att aca
ctg acc att gct ccc 1077Ala Thr Glu Ser Ser Thr Glu Ile Pro Ile Thr
Leu Thr Ile Ala Pro 310 315 320 atg tgc tgc gaa ttc aat ggt tta cgc
aac atc act gtg cca aga acc 1125Met Cys Cys Glu Phe Asn Gly Leu Arg
Asn Ile Thr Val Pro Arg Thr 325 330 335 caa gga tta cca gtc ctg aac
act cca ggg agt aac cag tac ctg acc 1173Gln Gly Leu Pro Val Leu Asn
Thr Pro Gly Ser Asn Gln Tyr Leu Thr 340 345 350 355 gca gac aat tac
cag tct ccg tgt gcg ata cct gag ttt gat gtc act 1221Ala Asp Asn Tyr
Gln Ser Pro Cys Ala Ile Pro Glu Phe Asp Val Thr 360 365 370 cca ccc
ata gac ata cca ggg gag gtg cgc aac atg atg gaa ttg gcg 1269Pro Pro
Ile Asp Ile Pro Gly Glu Val Arg Asn Met Met Glu Leu Ala 375 380 385
gaa ata gac acc atg ata ccc ctc aac ttg aca agt caa cgc aag aac
1317Glu Ile Asp Thr Met Ile Pro Leu Asn Leu Thr Ser Gln Arg Lys Asn
390 395 400 aca atg gac atg tat aga gtc gag ttg agc gac acg gct cac
tct gac 1365Thr Met Asp Met Tyr Arg Val Glu Leu Ser Asp Thr Ala His
Ser Asp 405 410 415 acg ccg atc ttg tgt ctc tcg ttg tcc ccc gct tca
gac ccc aga ttg 1413Thr Pro Ile Leu Cys Leu Ser Leu Ser Pro Ala Ser
Asp Pro Arg Leu 420 425 430 435 gca cac act atg ttg ggt gag ata tta
aat tac tac aca cac tgg gca 1461Ala His Thr Met Leu Gly Glu Ile Leu
Asn Tyr Tyr Thr His Trp Ala 440 445 450 ggg tcc ttg aaa ttt acc ttt
ctc ttt tgc ggc tca atg atg gcc acc 1509Gly Ser Leu Lys Phe Thr Phe
Leu Phe Cys Gly Ser Met Met Ala Thr 455 460 465 gga aag tta ttg gtt
tct tac gca cca ccc gga gca gag gcc ccc aag 1557Gly Lys Leu Leu Val
Ser Tyr Ala Pro Pro Gly Ala Glu Ala Pro Lys 470 475 480 agt cgc aaa
gaa gca atg ctt ggg aca cat gtg ata tgg gac att ggg 1605Ser Arg Lys
Glu Ala Met Leu Gly Thr His Val Ile Trp Asp Ile Gly 485 490 495 ttg
cag tct tca tgc act atg gtg gta cct tgg atc agt aat acc aca 1653Leu
Gln Ser Ser Cys Thr Met Val Val Pro Trp Ile Ser Asn Thr Thr 500 505
510 515 tac aga caa acc atc aac gat agt ttc aca gaa ggt ggc tac att
agc 1701Tyr Arg Gln Thr Ile Asn Asp Ser Phe Thr Glu Gly Gly Tyr Ile
Ser 520 525 530 atg ttc tat caa act agg gtt gtt gtc ccg ttg tcc aca
ccc aga aag 1749Met Phe Tyr Gln Thr Arg Val Val Val Pro Leu Ser Thr
Pro Arg Lys 535 540 545 atg gac atc ctg ggt ttt gtg tca gct tgc aat
gac ttc agt gtg cgc 1797Met Asp Ile Leu Gly Phe Val Ser Ala Cys Asn
Asp Phe Ser Val Arg 550 555 560 tta ctg cga gat aca aca cac att agt
caa gag gct atg cca caa gga 1845Leu Leu Arg Asp Thr Thr His Ile Ser
Gln Glu Ala Met Pro Gln Gly 565 570 575 att ggt gac atg att gag ggg
gcc gtt gaa ggg att act aaa aat gca 1893Ile Gly Asp Met Ile Glu Gly
Ala Val Glu Gly Ile Thr Lys Asn Ala 580 585 590 595 ttg gtt ccc ccg
act tcc acc aat agc ctg cct gac aca aag ccg agc 1941Leu Val Pro Pro
Thr Ser Thr Asn Ser Leu Pro Asp Thr Lys Pro Ser 600 605 610 ggt cca
gcc cac tcc aag gag ata cct gca ttg aca gcc gtg gag aca 1989Gly Pro
Ala His Ser Lys Glu Ile Pro Ala Leu Thr Ala Val Glu Thr 615 620 625
ggg gct acc aat ccg ttg gtg cct tcg gac acc gtg caa acg cgc cat
2037Gly Ala Thr Asn Pro Leu Val Pro Ser Asp Thr Val Gln Thr Arg His
630 635 640 gtc atc cag aga cga acg cga tca gag tcc acg gtt gag tca
ttc ttt 2085Val Ile Gln Arg Arg Thr Arg Ser Glu Ser Thr Val Glu Ser
Phe Phe 645 650 655 gca aga ggg gct tgc gtg gct atc att gag gtg gac
aat gat gca ccg 2133Ala Arg Gly Ala Cys Val Ala Ile Ile Glu Val Asp
Asn Asp Ala Pro 660 665 670 675 aca aag cgc gcc agc aga ttg ttt tcg
gtt tgg aaa ata act tac aaa 2181Thr Lys Arg Ala Ser Arg Leu Phe Ser
Val Trp Lys Ile Thr Tyr Lys 680 685 690 gat act gtt caa ctg aga cgc
aaa ctg gaa ttt ttc aca tat tcg aga 2229Asp Thr Val Gln Leu Arg Arg
Lys Leu Glu Phe Phe Thr Tyr Ser Arg 695 700 705 ttt gac atg gag ttc
act ttt gtg gtc acc tca aac tac att gat gca 2277Phe Asp Met Glu Phe
Thr Phe Val Val Thr Ser Asn Tyr Ile Asp Ala 710 715 720 aat aac gga
cat gca ttg aac caa gtt tat cag ata atg tat ata cca 2325Asn Asn Gly
His Ala Leu Asn Gln Val Tyr Gln Ile Met Tyr Ile Pro 725 730 735 ccc
gga gca cct atc cct ggt aaa tgg aat gac tat acg tgg cag acg 2373Pro
Gly Ala Pro Ile Pro Gly Lys Trp Asn Asp Tyr Thr Trp Gln Thr 740 745
750 755 tcc tct aac ccg tcg gtg ttt tac acc tat ggg gcg ccc cca gca
aga 2421Ser Ser Asn Pro Ser Val Phe Tyr Thr Tyr Gly Ala Pro Pro Ala
Arg 760 765 770 ata tca gtg ccc tac gtg gga att gct aat gcg tat tcc
cac ttt tat 2469Ile Ser Val Pro Tyr Val Gly Ile Ala Asn Ala Tyr Ser
His Phe Tyr 775 780 785 gat ggg ttt gca aaa gta cca cta gcg ggt caa
gcc tca act gaa ggc 2517Asp Gly Phe Ala Lys Val Pro Leu Ala Gly Gln
Ala Ser Thr Glu Gly 790 795 800 gat tcg ttg tac ggt gct gcc tca ctg
aat gat ttt gga tca ctg gct 2565Asp Ser Leu Tyr Gly Ala Ala Ser Leu
Asn Asp Phe Gly Ser Leu Ala 805 810 815 gtt cgc gtg gta aat gat cac
aac ccc acg cgg ctc acc tcc aag atc 2613Val Arg Val Val Asn Asp His
Asn Pro Thr Arg Leu Thr Ser Lys Ile 820 825 830 835 aga gtg tac atg
aag cca aag cat gtc aga gtc tgg tgc cca cga cct 2661Arg Val Tyr Met
Lys Pro Lys His Val Arg Val Trp Cys Pro Arg Pro 840 845 850 cca cga
gca gtc cca tac ttc gga cca ggt gtt gat tat aaa gat ggg 2709Pro Arg
Ala Val Pro Tyr Phe Gly Pro Gly Val Asp Tyr Lys Asp Gly 855 860 865
ctc acc cca cta cca gaa aag gga tta acg act tat 2745Leu Thr Pro Leu
Pro Glu Lys Gly Leu Thr Thr Tyr 870 875 4879PRTHuman poliovirus 2
4Met Gly Ala Gln Val Ser Ser Gln Lys Val Gly Ala His Glu Asn Ser 1
5 10 15 Asn Arg Ala Tyr Gly Gly Ser Thr Ile Asn Tyr Thr Thr Ile Asn
Tyr 20 25 30 Tyr Arg Asp Ser Ala Ser Asn Ala Ala Ser Lys Gln Asp
Phe Ala Gln 35 40 45 Asp Pro Ser Lys Phe Thr Glu Pro Ile Lys Asp
Val Leu Ile Lys Thr 50 55 60 Ala Pro Met Leu Asn Ser Pro Asn Ile
Glu Ala Cys Gly Tyr Ser Asp 65 70 75 80 Arg Val Met Gln Leu Thr Leu
Gly Asn Ser Thr Ile Thr Thr Gln Glu 85 90 95 Ala Ala Asn Ser Val
Val Ala Tyr Gly Arg Trp Pro Glu Tyr Ile Arg 100 105 110 Asp Thr Glu
Ala Asn Pro Val Asp Gln Pro Thr Glu Pro Asp Val Ala 115 120 125 Ala
Cys Arg Phe Tyr Thr Leu Asp Thr Val Thr Trp Arg Lys Glu Ser 130 135
140 Arg Gly Trp Trp Trp Lys Leu Pro Asp Ala Leu Lys Asp Met Gly Leu
145 150 155 160 Phe Gly Gln Asn Met Phe Tyr His Tyr Leu Gly Arg Ala
Gly Tyr Thr 165 170 175 Val His Val Gln Cys Asn Ala Ser Lys Phe His
Gln Gly Ala Leu Gly 180 185 190 Val Phe Ala Val Pro Glu Met Cys Leu
Ala Gly Asp Ser Thr Thr His 195 200 205 Met Phe Thr Lys Tyr Glu Asn
Ala Asn Pro Gly Glu Lys Gly Gly Glu 210 215 220 Phe Lys Gly Ser Phe
Thr Leu Asp Thr Asn Ala Thr Asn Pro Ala Arg 225 230 235 240 Asn Phe
Cys Pro Val Asp Tyr Leu Phe Gly Ser Gly Val Leu Val Gly 245 250 255
Asn Ala Phe Val Tyr Pro His Gln Ile Ile Asn Leu Arg Thr Asn Asn 260
265 270 Cys Ala Thr Leu Val Leu Pro Tyr Val Asn Ser Leu Ser Ile Asp
Ser 275 280 285 Met Thr Lys His Asn Asn Trp Gly Ile Ala Ile Leu Pro
Leu Ala Pro 290 295 300 Leu Asp Phe Ala Thr Glu Ser Ser Thr Glu Ile
Pro Ile Thr Leu Thr 305 310 315 320 Ile Ala Pro Met Cys Cys Glu Phe
Asn Gly Leu Arg Asn Ile Thr Val 325 330 335 Pro Arg Thr Gln Gly Leu
Pro Val Leu Asn Thr Pro Gly Ser Asn Gln 340 345 350 Tyr Leu Thr Ala
Asp Asn Tyr Gln Ser Pro Cys Ala Ile Pro Glu Phe 355 360 365 Asp Val
Thr Pro Pro Ile Asp Ile Pro Gly Glu Val Arg Asn Met Met 370 375 380
Glu Leu Ala Glu Ile Asp Thr Met Ile Pro Leu Asn Leu Thr Ser Gln 385
390 395 400 Arg Lys Asn Thr Met Asp Met Tyr Arg Val Glu Leu Ser Asp
Thr Ala 405 410 415 His Ser Asp Thr Pro Ile Leu Cys Leu Ser Leu Ser
Pro Ala Ser Asp 420 425 430 Pro Arg Leu Ala His Thr Met Leu Gly Glu
Ile Leu Asn Tyr Tyr Thr 435 440 445 His Trp Ala Gly Ser Leu Lys Phe
Thr Phe Leu Phe Cys Gly Ser Met 450 455 460 Met Ala Thr Gly Lys Leu
Leu Val Ser Tyr Ala Pro Pro Gly Ala Glu 465 470 475 480 Ala Pro Lys
Ser Arg Lys Glu Ala Met Leu Gly Thr His Val Ile Trp 485 490 495 Asp
Ile Gly Leu Gln Ser Ser Cys Thr Met Val Val Pro Trp Ile Ser 500 505
510 Asn Thr Thr Tyr Arg Gln Thr Ile Asn Asp Ser Phe Thr Glu Gly Gly
515 520 525 Tyr Ile Ser Met Phe Tyr Gln Thr Arg Val Val Val Pro Leu
Ser Thr 530 535 540 Pro Arg Lys Met Asp Ile Leu Gly Phe Val Ser Ala
Cys Asn Asp Phe 545 550 555 560 Ser Val Arg Leu Leu Arg Asp Thr Thr
His Ile Ser Gln Glu Ala Met 565 570 575 Pro Gln Gly Ile Gly Asp Met
Ile Glu Gly Ala Val Glu Gly Ile Thr 580 585 590 Lys Asn Ala Leu Val
Pro Pro Thr Ser Thr Asn Ser Leu Pro Asp Thr 595 600 605 Lys Pro Ser
Gly Pro Ala His Ser Lys Glu Ile Pro Ala Leu Thr Ala 610 615 620 Val
Glu Thr Gly Ala Thr Asn Pro Leu Val Pro Ser Asp Thr Val Gln 625 630
635 640 Thr Arg His Val Ile Gln Arg Arg Thr Arg Ser Glu Ser Thr Val
Glu 645 650 655 Ser Phe Phe Ala Arg Gly Ala Cys Val Ala Ile Ile Glu
Val Asp Asn 660 665 670 Asp Ala Pro Thr Lys Arg Ala Ser Arg Leu Phe
Ser Val Trp Lys Ile 675 680 685 Thr Tyr Lys Asp Thr Val Gln Leu Arg
Arg Lys Leu Glu Phe Phe Thr 690 695 700 Tyr Ser Arg Phe Asp Met Glu
Phe Thr Phe Val Val Thr Ser Asn Tyr 705
710 715 720 Ile Asp Ala Asn Asn Gly His Ala Leu Asn Gln Val Tyr Gln
Ile Met 725 730 735 Tyr Ile Pro Pro Gly Ala Pro Ile Pro Gly Lys Trp
Asn Asp Tyr Thr 740 745 750 Trp Gln Thr Ser Ser Asn Pro Ser Val Phe
Tyr Thr Tyr Gly Ala Pro 755 760 765 Pro Ala Arg Ile Ser Val Pro Tyr
Val Gly Ile Ala Asn Ala Tyr Ser 770 775 780 His Phe Tyr Asp Gly Phe
Ala Lys Val Pro Leu Ala Gly Gln Ala Ser 785 790 795 800 Thr Glu Gly
Asp Ser Leu Tyr Gly Ala Ala Ser Leu Asn Asp Phe Gly 805 810 815 Ser
Leu Ala Val Arg Val Val Asn Asp His Asn Pro Thr Arg Leu Thr 820 825
830 Ser Lys Ile Arg Val Tyr Met Lys Pro Lys His Val Arg Val Trp Cys
835 840 845 Pro Arg Pro Pro Arg Ala Val Pro Tyr Phe Gly Pro Gly Val
Asp Tyr 850 855 860 Lys Asp Gly Leu Thr Pro Leu Pro Glu Lys Gly Leu
Thr Thr Tyr 865 870 875 52745DNAArtificialdeoptimized Sabin 2
sequence 5gagtgttgtg tcaggtatac aactgtttgt tggaaccact gtgttagctt
tacttctcat 60ttaaccaatt aatcaaaaac aatacgagga taaaacaaca atactacaat
gggtgcgcaa 120gtcagcagcc agaaagtcgg tgcgcacgaa aatagcaacc
gggcgtatgg tggtagcacg 180atcaattaca cgacgatcaa ttactatcgg
gacagcgcga gcaatgcggc gagcaagcaa 240gattttgcgc aagatccgag
caagttcacg gaaccgatca aggacgtcct tatcaagacg 300gcgccgatgc
ttaacagccc gaacatcgag gcgtgtggtt atagtgaccg ggtcatgcag
360cttacgcttg gtaatagcac gatcacgacg caagaagcgg cgaatagcgt
cgtcgcgtac 420ggtcggtggc cggaatacat ccgggatacg gaggcgaatc
cggtcgacca accgacggag 480ccggatgtcg cggcgtgccg gttctacacg
cttgatacgg tcacgtggcg gaaggagagc 540cggggttggt ggtggaaact
tccggacgcg cttaaagaca tgggtctttt tggtcaaaac 600atgttttatc
actatcttgg tcgggcgggt tacacggtcc acgtccagtg caatgcgagc
660aagtttcatc aaggtgccct tggtgtcttt gcggtcccgg aaatgtgtct
tgcgggtgat 720agcacgacgc acatgttcac gaagtacgag aatgcgaatc
cgggtgaaaa aggtggtgaa 780ttcaaaggta gcttcacgct tgatacgaac
gcgacgaacc cggcgcggaa cttctgcccg 840gtcgattacc ttttcggtag
cggtgtcctt gtcggtaatg cgtttgtcta tccgcatcaa 900atcatcaacc
ttcggacgaa caactgtgcg acgcttgtct tgccgtatgt caacagccty
960agcatcgata gcatgacgaa gcacaacaac tggggtatcg cgatccttcc
gcttgcgccg 1020cttgactttg cgacggaaag cagcacggag atcccgatca
cgcttacgat cgcgccgatg 1080tgctgcgaat tcaatggtct tcggaacatc
acggtcccgc ggacgcaagg tcttccggtc 1140cttaacacgc cgggtagcaa
ccagtacctt acggcggaca attaccagag cccgtgtgcg 1200atcccggagt
ttgatgtcac gccgccgatc gacatcccgg gtgaggtccg gaacatgatg
1260gaacttgcgg aaatcgacac gatgatcccg cttaacctta cgagccaacg
gaagaacacg 1320atggacatgt atcgggtcga gcttagcgac acggcgcaca
gcgacacgcc gatcctttgt 1380cttagcttga gcccggcgag cgacccgcgg
cttgcgcaca cgatgcttgg tgagatcctt 1440aattactaca cgcactgggc
gggtagcttg aaatttacgt ttcttttttg cggtagcatg 1500atggcgacgg
gtaagcttct tgtcagctac gcgccgccgg gtgcggaggc gccgaagagc
1560cggaaagaag cgatgcttgg tacgcatgtc atctgggaca tcggtcttca
gagcagctgc 1620acgatggtcg tcccgtggat cagcaatacg acgtaccggc
aaacgatcaa cgatagcttc 1680acggaaggtg gttacatcag catgttctat
caaacgcggg tcgtcgtccc gcttagcacg 1740ccgcggaaga tggacatcct
tggttttgtc agcgcgtgca atgacttcag cgtccggctt 1800cttcgggata
cgacgcacat cagccaagag gcgatgccgc aaggtatcgg tgacatgatc
1860gagggtgcgg tcgaaggtat cacgaaaaat gcgcttgtcc cgccgacgag
cacgaatagc 1920cttccggaca cgaagccgag cggtccggcg cacagcaagg
agatcccggc gcttacggcg 1980gtcgagacgg gtgcgacgaa tccgcttgtc
ccgagcgaca cggtccaaac gcggcatgtc 2040atccagcggc ggacgcggag
cgagagcacg gtcgagagct tctttgcgcg gggtgcgtgc 2100gtcgcgatca
tcgaggtcga caatgatgcg ccgacgaagc gggcgagccg gctttttagc
2160gtctggaaaa tcacgtacaa agatacggtc caacttcggc ggaaacttga
atttttcacg 2220tatagccggt ttgacatgga gttcacgttt gtcgtcacga
gcaactacat cgatgcgaat 2280aacggtcatg cgcttaacca agtctatcag
atcatgtata tcccgccggg tgcgccgatc 2340ccgggtaaat ggaatgacta
tacgtggcag acgagcagca acccgagcgt cttttacacg 2400tatggtgcgc
cgccggcgcg gatcagcgtc ccgtacgtcg gtatcgcgaa tgcgtatagc
2460cacttttatg atggttttgc gaaagtcccg cttgcgggtc aagcgagcac
ggaaggtgat 2520agcctttacg gtgcggcgag ccttaatgat tttggtagcc
ttgcggtccg ggtcgtcaat 2580gatcacaacc cgacgcggct tacgagcaag
atccgggtct acatgaagcc gaagcatgtc 2640cgggtctggt gcccgcggcc
tcctcgagcg gtcccgtact tcggtccggg tgtcgattat 2700aaagatgggc
tcaccccact accagaaaag ggattaacga cttat 274566621DNAHuman poliovirus
2CDS(1)..(6621) 6atg ggc gcc caa gtc tca tca cag aaa gtt gga gcc
cat gag aat tca 48Met Gly Ala Gln Val Ser Ser Gln Lys Val Gly Ala
His Glu Asn Ser 1 5 10 15 aac aga gct tat ggc gga tcc acc att aat
tac act act att aat tat 96Asn Arg Ala Tyr Gly Gly Ser Thr Ile Asn
Tyr Thr Thr Ile Asn Tyr 20 25 30 tac agg gat tct gcg agc aat gcc
gct agt aag cag gac ttt gca caa 144Tyr Arg Asp Ser Ala Ser Asn Ala
Ala Ser Lys Gln Asp Phe Ala Gln 35 40 45 gac cca tcc aag ttc act
gaa cct att aaa gat gtt ctc att aag acc 192Asp Pro Ser Lys Phe Thr
Glu Pro Ile Lys Asp Val Leu Ile Lys Thr 50 55 60 gct ccc acg cta
aac tct cct aat atc gag gcg tgt ggg tat agc gac 240Ala Pro Thr Leu
Asn Ser Pro Asn Ile Glu Ala Cys Gly Tyr Ser Asp 65 70 75 80 aga gtg
atg caa cta acc cta ggc aat tcc acc att acc aca cag gag 288Arg Val
Met Gln Leu Thr Leu Gly Asn Ser Thr Ile Thr Thr Gln Glu 85 90 95
gcg gcc aat tct gtc gtt gca tac ggc cgg tgg ccc gag tac atc aag
336Ala Ala Asn Ser Val Val Ala Tyr Gly Arg Trp Pro Glu Tyr Ile Lys
100 105 110 gac tca gaa gca aat cct gtg gac cag cca act gaa ccg gac
gtt gcc 384Asp Ser Glu Ala Asn Pro Val Asp Gln Pro Thr Glu Pro Asp
Val Ala 115 120 125 gcg tgc agg ttt tac aca cta gac act gtt act tgg
cgc aag gag tcc 432Ala Cys Arg Phe Tyr Thr Leu Asp Thr Val Thr Trp
Arg Lys Glu Ser 130 135 140 aga ggg tgg tgg tgg aaa ctg cct gat gca
cta aag gac atg gga tta 480Arg Gly Trp Trp Trp Lys Leu Pro Asp Ala
Leu Lys Asp Met Gly Leu 145 150 155 160 ttc ggc cag aac atg ttc tac
cac tac ctc ggg agg gct ggc tat act 528Phe Gly Gln Asn Met Phe Tyr
His Tyr Leu Gly Arg Ala Gly Tyr Thr 165 170 175 gtg cac gta cag tgt
aat gct tca aag ttt cac cag ggc gcc ctc ggg 576Val His Val Gln Cys
Asn Ala Ser Lys Phe His Gln Gly Ala Leu Gly 180 185 190 gta ttc gca
gtt cca gaa atg tgc ctg gca ggc gac agc aca acc cac 624Val Phe Ala
Val Pro Glu Met Cys Leu Ala Gly Asp Ser Thr Thr His 195 200 205 atg
ttt aca aaa tat gag aat gca aat ccg ggt gag aaa ggg ggt gaa 672Met
Phe Thr Lys Tyr Glu Asn Ala Asn Pro Gly Glu Lys Gly Gly Glu 210 215
220 ttc aaa ggg agt ttt act ctg gat act aac gct acc aac cct gca cgc
720Phe Lys Gly Ser Phe Thr Leu Asp Thr Asn Ala Thr Asn Pro Ala Arg
225 230 235 240 aac ttt tgt ccc gtt gat tat ctc ttc ggg agc gga gta
ctg gcg gga 768Asn Phe Cys Pro Val Asp Tyr Leu Phe Gly Ser Gly Val
Leu Ala Gly 245 250 255 aat gcg ttt gtt tac cca cat cag ata att aat
ctg cgc acc aac aac 816Asn Ala Phe Val Tyr Pro His Gln Ile Ile Asn
Leu Arg Thr Asn Asn 260 265 270 tgt gcc acg ttg gtg ctg cca tac gtt
aat tca ctt tcc ata gac agc 864Cys Ala Thr Leu Val Leu Pro Tyr Val
Asn Ser Leu Ser Ile Asp Ser 275 280 285 atg aca aaa cac aac aat tgg
gga att gct atc ctt ccg ctg gca cca 912Met Thr Lys His Asn Asn Trp
Gly Ile Ala Ile Leu Pro Leu Ala Pro 290 295 300 ctt gac ttt gcc acc
gag tcc tcc act gag ata ccc att act cta act 960Leu Asp Phe Ala Thr
Glu Ser Ser Thr Glu Ile Pro Ile Thr Leu Thr 305 310 315 320 att gcc
cct atg tgt tgt gaa ttc aat ggg ttg cgc aac atc act gta 1008Ile Ala
Pro Met Cys Cys Glu Phe Asn Gly Leu Arg Asn Ile Thr Val 325 330 335
ccc aga act caa ggg ttg cca gtc tta aac act cca gga agc aac cag
1056Pro Arg Thr Gln Gly Leu Pro Val Leu Asn Thr Pro Gly Ser Asn Gln
340 345 350 tac tta aca gca gac aac tat caa tcc cca tgt gcg ata ccc
gag ttt 1104Tyr Leu Thr Ala Asp Asn Tyr Gln Ser Pro Cys Ala Ile Pro
Glu Phe 355 360 365 gat gta aca cca ccc ata gac atc ccg ggg gaa gtg
cgc aac atg atg 1152Asp Val Thr Pro Pro Ile Asp Ile Pro Gly Glu Val
Arg Asn Met Met 370 375 380 gaa ttg gca gag ata gac acc atg ata cct
ctc aat ctg acg aac cag 1200Glu Leu Ala Glu Ile Asp Thr Met Ile Pro
Leu Asn Leu Thr Asn Gln 385 390 395 400 cgc aag aac acc atg gat atg
tac aga gtc gaa ctg aat gat gcg gct 1248Arg Lys Asn Thr Met Asp Met
Tyr Arg Val Glu Leu Asn Asp Ala Ala 405 410 415 cac tct gac aca cca
ata ttg tgt ctc tca ctg tct cca gca tca gat 1296His Ser Asp Thr Pro
Ile Leu Cys Leu Ser Leu Ser Pro Ala Ser Asp 420 425 430 cct agg cta
gca cac act atg cta ggt gaa ata ctg aac tac tac aca 1344Pro Arg Leu
Ala His Thr Met Leu Gly Glu Ile Leu Asn Tyr Tyr Thr 435 440 445 cac
tgg gca ggg tca ttg aag ttc aca ttt ctc ttc tgc ggc tca atg 1392His
Trp Ala Gly Ser Leu Lys Phe Thr Phe Leu Phe Cys Gly Ser Met 450 455
460 atg gcc act ggt aaa ttg cta gtg tcc tat gca cct cct ggt gcg gaa
1440Met Ala Thr Gly Lys Leu Leu Val Ser Tyr Ala Pro Pro Gly Ala Glu
465 470 475 480 gcc cct aaa agc cgc aaa gaa gcg atg ctc ggc acc cac
gtg atc tgg 1488Ala Pro Lys Ser Arg Lys Glu Ala Met Leu Gly Thr His
Val Ile Trp 485 490 495 gac atc gga tta cag tca tca tgc act atg gtg
gta cct tgg att agc 1536Asp Ile Gly Leu Gln Ser Ser Cys Thr Met Val
Val Pro Trp Ile Ser 500 505 510 aac acc aca tac aga caa acc atc aac
gat agc ttc aca gaa gga ggg 1584Asn Thr Thr Tyr Arg Gln Thr Ile Asn
Asp Ser Phe Thr Glu Gly Gly 515 520 525 tac atc agt atg ttt tac caa
act aga gtt gtt gtg cca ttg tcc acc 1632Tyr Ile Ser Met Phe Tyr Gln
Thr Arg Val Val Val Pro Leu Ser Thr 530 535 540 cct aga aag atg gac
ata ttg ggc ttt gtg tca gcc tgc aat gac ttc 1680Pro Arg Lys Met Asp
Ile Leu Gly Phe Val Ser Ala Cys Asn Asp Phe 545 550 555 560 agt gtg
cgc ctg ttg cgt gac acg acg cac ata agc caa gag gct atg 1728Ser Val
Arg Leu Leu Arg Asp Thr Thr His Ile Ser Gln Glu Ala Met 565 570 575
cca caa gga ttg ggt gat tta att gaa ggg gtt gtt gag gga gtc acg
1776Pro Gln Gly Leu Gly Asp Leu Ile Glu Gly Val Val Glu Gly Val Thr
580 585 590 aga aat gcc ttg aca cca ctg aca cct gcc aac aac ttg cct
gat aca 1824Arg Asn Ala Leu Thr Pro Leu Thr Pro Ala Asn Asn Leu Pro
Asp Thr 595 600 605 caa tct agc ggc cca gcc cac tct aag gaa aca cca
gcg cta aca gcc 1872Gln Ser Ser Gly Pro Ala His Ser Lys Glu Thr Pro
Ala Leu Thr Ala 610 615 620 gta gag aca ggg gcc acc aac cca ttg gtg
cct tca gac acg gta caa 1920Val Glu Thr Gly Ala Thr Asn Pro Leu Val
Pro Ser Asp Thr Val Gln 625 630 635 640 act cgt cac gtc atc caa aag
cgg acg cgg tcg gag tct acg gtt gag 1968Thr Arg His Val Ile Gln Lys
Arg Thr Arg Ser Glu Ser Thr Val Glu 645 650 655 tct ttc ttc gca aga
gga gct tgt gtg gcc att att gaa gtg gat aat 2016Ser Phe Phe Ala Arg
Gly Ala Cys Val Ala Ile Ile Glu Val Asp Asn 660 665 670 gat gct cca
aca aag cgt gcc agt aaa tta ttt tca gtc tgg aag ata 2064Asp Ala Pro
Thr Lys Arg Ala Ser Lys Leu Phe Ser Val Trp Lys Ile 675 680 685 act
tac aaa gac acc gtt cag tta aga cgt aag ttg gag ttc ttt aca 2112Thr
Tyr Lys Asp Thr Val Gln Leu Arg Arg Lys Leu Glu Phe Phe Thr 690 695
700 tat tca agg ttt gac atg gag ttc acc ttt gtg gtt aca tcc aat tat
2160Tyr Ser Arg Phe Asp Met Glu Phe Thr Phe Val Val Thr Ser Asn Tyr
705 710 715 720 acc gat gca aac aat ggg cac gca cta aat caa gtt tac
cag ata atg 2208Thr Asp Ala Asn Asn Gly His Ala Leu Asn Gln Val Tyr
Gln Ile Met 725 730 735 tac ata cca cct ggg gca ccg atc cct ggc aag
tgg aat gat tac aca 2256Tyr Ile Pro Pro Gly Ala Pro Ile Pro Gly Lys
Trp Asn Asp Tyr Thr 740 745 750 tgg caa acg tca tct aac cca tca gtg
ttt tac act tac ggg gca cct 2304Trp Gln Thr Ser Ser Asn Pro Ser Val
Phe Tyr Thr Tyr Gly Ala Pro 755 760 765 cca gct aga ata tca gtg ccc
tac gtg ggc att gcc aat gca tat tct 2352Pro Ala Arg Ile Ser Val Pro
Tyr Val Gly Ile Ala Asn Ala Tyr Ser 770 775 780 cat ttt tac gat ggg
ttt gcc aaa gta cca cta gca ggc caa gcc tca 2400His Phe Tyr Asp Gly
Phe Ala Lys Val Pro Leu Ala Gly Gln Ala Ser 785 790 795 800 aca gag
ggt gac tcg ctg tat gga gcg gct tca ttg aat gac ttc gga 2448Thr Glu
Gly Asp Ser Leu Tyr Gly Ala Ala Ser Leu Asn Asp Phe Gly 805 810 815
tca ctg gct gtt cga gtg gtg aat gac cac aac cct acg aaa ctc act
2496Ser Leu Ala Val Arg Val Val Asn Asp His Asn Pro Thr Lys Leu Thr
820 825 830 tca aaa atc aga gtg tac atg aaa cca aag cac gtc aga gtg
tgg tgt 2544Ser Lys Ile Arg Val Tyr Met Lys Pro Lys His Val Arg Val
Trp Cys 835 840 845 ccg cga ccc cct cga gca gtc cca tac tac gga cca
ggg gtt gac tac 2592Pro Arg Pro Pro Arg Ala Val Pro Tyr Tyr Gly Pro
Gly Val Asp Tyr 850 855 860 aag gat gga cta gcc cca ctg cca gag aaa
ggc ttg aca acc tat ggt 2640Lys Asp Gly Leu Ala Pro Leu Pro Glu Lys
Gly Leu Thr Thr Tyr Gly 865 870 875 880 ttt ggc cac caa aat aag gca
gtg tac acg gca ggt tac aaa att tgc 2688Phe Gly His Gln Asn Lys Ala
Val Tyr Thr Ala Gly Tyr Lys Ile Cys 885 890 895 aat tac cac ctc gcc
acc cag gaa gac tta caa aat gcg gta aac att 2736Asn Tyr His Leu Ala
Thr Gln Glu Asp Leu Gln Asn Ala Val Asn Ile 900 905 910 atg tgg att
aga gac ctt tta gta gtg gaa tcc aaa gcc caa ggc ata 2784Met Trp Ile
Arg Asp Leu Leu Val Val Glu Ser Lys Ala Gln Gly Ile 915 920 925 gac
tca att gct aga tgt aac tgc cac act gga gtg tac tac tgt gaa 2832Asp
Ser Ile Ala Arg Cys Asn Cys His Thr Gly Val Tyr Tyr Cys Glu 930 935
940 tcc agg agg aag tac tac ccg gtc tct ttt act ggc ccc acc ttt cag
2880Ser Arg Arg Lys Tyr Tyr Pro Val Ser Phe Thr Gly Pro Thr Phe Gln
945 950 955 960 tac atg gaa gca aat gag tac tat cca gcc cga tac caa
tcc cac atg 2928Tyr Met Glu Ala Asn Glu Tyr Tyr Pro Ala Arg Tyr Gln
Ser His Met 965 970 975 tta att ggc cat ggt ttt gca tct cca ggg gac
tgt ggt ggg att ctc 2976Leu Ile Gly His Gly Phe Ala Ser Pro Gly Asp
Cys Gly Gly Ile Leu 980 985 990
agg tgc caa cat gga gta att gga atc att aca gct gga gga gaa ggc
3024Arg Cys Gln His Gly Val Ile Gly Ile Ile Thr Ala Gly Gly Glu Gly
995 1000 1005 cta gtc gct ttc tcg gac atc aga gat ctg tac gca tac
gag gag 3069Leu Val Ala Phe Ser Asp Ile Arg Asp Leu Tyr Ala Tyr Glu
Glu 1010 1015 1020 gag gct atg gag cag gga gtc tcc aac tat att gag
tcc ctt ggg 3114Glu Ala Met Glu Gln Gly Val Ser Asn Tyr Ile Glu Ser
Leu Gly 1025 1030 1035 gct gca ttt ggg agt gga ttc acc cag caa ata
gga aac aaa att 3159Ala Ala Phe Gly Ser Gly Phe Thr Gln Gln Ile Gly
Asn Lys Ile 1040 1045 1050 tca gaa ctc act agc atg gtc acc agc act
ata act gag aaa cta 3204Ser Glu Leu Thr Ser Met Val Thr Ser Thr Ile
Thr Glu Lys Leu 1055 1060 1065 cta aag aat ctc att aaa ata att tca
tcc ctt gtt atc atc acc 3249Leu Lys Asn Leu Ile Lys Ile Ile Ser Ser
Leu Val Ile Ile Thr 1070 1075 1080 aga aac tat gaa gac acg acc aca
gtg ctg gct acc ctt gct ctc 3294Arg Asn Tyr Glu Asp Thr Thr Thr Val
Leu Ala Thr Leu Ala Leu 1085 1090 1095 ctc ggt tgt gat gcg tcc cca
tgg caa tgg cta aag aag aaa gcc 3339Leu Gly Cys Asp Ala Ser Pro Trp
Gln Trp Leu Lys Lys Lys Ala 1100 1105 1110 tgt gac atc ttg gaa atc
ccc tac atc atg cga cag ggc gat agc 3384Cys Asp Ile Leu Glu Ile Pro
Tyr Ile Met Arg Gln Gly Asp Ser 1115 1120 1125 tgg ttg aag aag ttt
aca gag gca tgc aat gca gcc aag gga ttg 3429Trp Leu Lys Lys Phe Thr
Glu Ala Cys Asn Ala Ala Lys Gly Leu 1130 1135 1140 gaa tgg gtg tct
aat aaa ata tcc aaa ttt att gac tgg ctc aaa 3474Glu Trp Val Ser Asn
Lys Ile Ser Lys Phe Ile Asp Trp Leu Lys 1145 1150 1155 gag aag atc
att cca cag gct aga gac aag cta gag ttt gtt acc 3519Glu Lys Ile Ile
Pro Gln Ala Arg Asp Lys Leu Glu Phe Val Thr 1160 1165 1170 aaa ctg
aag caa cta gaa atg ttg gag aac caa att gca acc att 3564Lys Leu Lys
Gln Leu Glu Met Leu Glu Asn Gln Ile Ala Thr Ile 1175 1180 1185 cat
caa tcg tgc cca agt cag gag cat caa gaa atc ctg ttc aat 3609His Gln
Ser Cys Pro Ser Gln Glu His Gln Glu Ile Leu Phe Asn 1190 1195 1200
aac gtg aga tgg tta tcc ata cag tca aag aga ttt gcc ccg ctc 3654Asn
Val Arg Trp Leu Ser Ile Gln Ser Lys Arg Phe Ala Pro Leu 1205 1210
1215 tat gcg gtt gag gct aag aga ata caa aag tta gag cac acg att
3699Tyr Ala Val Glu Ala Lys Arg Ile Gln Lys Leu Glu His Thr Ile
1220 1225 1230 aac aac tac gta cag ttc aag agc aaa cac cgt att gaa
cca gta 3744Asn Asn Tyr Val Gln Phe Lys Ser Lys His Arg Ile Glu Pro
Val 1235 1240 1245 tgt ttg ttg gtg cac ggt agc cca ggc acg ggc aag
tca gtt gcc 3789Cys Leu Leu Val His Gly Ser Pro Gly Thr Gly Lys Ser
Val Ala 1250 1255 1260 acc aat tta att gcc aga gca ata gca gag aag
gag aac acc tcc 3834Thr Asn Leu Ile Ala Arg Ala Ile Ala Glu Lys Glu
Asn Thr Ser 1265 1270 1275 aca tac tca cta cca cca gat ccc tcc cat
ttc gat ggg tac aag 3879Thr Tyr Ser Leu Pro Pro Asp Pro Ser His Phe
Asp Gly Tyr Lys 1280 1285 1290 caa caa ggt gtg gtg atc atg gat gat
ttg aat cag aac cca gac 3924Gln Gln Gly Val Val Ile Met Asp Asp Leu
Asn Gln Asn Pro Asp 1295 1300 1305 gga gca gac atg aag ctg ttt tgt
cag atg gtc tcc act gta gaa 3969Gly Ala Asp Met Lys Leu Phe Cys Gln
Met Val Ser Thr Val Glu 1310 1315 1320 ttc ata cca cca atg gct tcg
cta gaa gaa aag ggt att ttg ttc 4014Phe Ile Pro Pro Met Ala Ser Leu
Glu Glu Lys Gly Ile Leu Phe 1325 1330 1335 aca tct aat tac gtt ttg
gcc tca acc aat tcc agt cgc atc acc 4059Thr Ser Asn Tyr Val Leu Ala
Ser Thr Asn Ser Ser Arg Ile Thr 1340 1345 1350 cca cca act gtt gcg
cac agc gat gcc cta gcc agg cgc ttt gca 4104Pro Pro Thr Val Ala His
Ser Asp Ala Leu Ala Arg Arg Phe Ala 1355 1360 1365 ttt gac atg gac
ata caa atc atg agc gag tat tct aga gat gga 4149Phe Asp Met Asp Ile
Gln Ile Met Ser Glu Tyr Ser Arg Asp Gly 1370 1375 1380 aaa ttg aac
atg gcg atg gca act gaa atg tgt aag aac tgt cat 4194Lys Leu Asn Met
Ala Met Ala Thr Glu Met Cys Lys Asn Cys His 1385 1390 1395 caa cca
gca aac ttc aag aga tgt tgc cca ttg gtg tgt ggc aaa 4239Gln Pro Ala
Asn Phe Lys Arg Cys Cys Pro Leu Val Cys Gly Lys 1400 1405 1410 gcc
atc cag ctg atg gac aaa tct tcc aga gtc aga tat agt ata 4284Ala Ile
Gln Leu Met Asp Lys Ser Ser Arg Val Arg Tyr Ser Ile 1415 1420 1425
gat cag att act acc atg att att aat gag agg aac aga aga tca 4329Asp
Gln Ile Thr Thr Met Ile Ile Asn Glu Arg Asn Arg Arg Ser 1430 1435
1440 agt atc ggt aat tgc atg gag gca ctt ttc caa ggt cct ctt caa
4374Ser Ile Gly Asn Cys Met Glu Ala Leu Phe Gln Gly Pro Leu Gln
1445 1450 1455 tac aaa gac ctg aaa ata gac att aag acc aca cct cct
cct gag 4419Tyr Lys Asp Leu Lys Ile Asp Ile Lys Thr Thr Pro Pro Pro
Glu 1460 1465 1470 tgc atc aat gat ttg ctc caa gca gtt gat tct caa
gag gta aga 4464Cys Ile Asn Asp Leu Leu Gln Ala Val Asp Ser Gln Glu
Val Arg 1475 1480 1485 gac tac tgt gag aag aag ggt tgg ata gta gac
atc act agt cag 4509Asp Tyr Cys Glu Lys Lys Gly Trp Ile Val Asp Ile
Thr Ser Gln 1490 1495 1500 gtg caa acc gaa aga aac atc aat aga gca
atg act att ctt cag 4554Val Gln Thr Glu Arg Asn Ile Asn Arg Ala Met
Thr Ile Leu Gln 1505 1510 1515 gcg gtc acc aca ttt gcc gca gtt gct
gga gtg gtg tat gtg atg 4599Ala Val Thr Thr Phe Ala Ala Val Ala Gly
Val Val Tyr Val Met 1520 1525 1530 tac aaa ctc ttt gca ggg cat caa
gga gcg tat aca ggg ctt ccc 4644Tyr Lys Leu Phe Ala Gly His Gln Gly
Ala Tyr Thr Gly Leu Pro 1535 1540 1545 aat aag aga ccc aat gtc ccc
acc atc agg act gcc aag gtt cag 4689Asn Lys Arg Pro Asn Val Pro Thr
Ile Arg Thr Ala Lys Val Gln 1550 1555 1560 ggc cca gga ttt gac tac
gca gtg gca atg gcc aaa aga aac att 4734Gly Pro Gly Phe Asp Tyr Ala
Val Ala Met Ala Lys Arg Asn Ile 1565 1570 1575 ctt acg gca act acc
att aag gga gag ttc aca atg ctc gga gtg 4779Leu Thr Ala Thr Thr Ile
Lys Gly Glu Phe Thr Met Leu Gly Val 1580 1585 1590 cat gat aat gtg
gcc att cta cca acc cac gca tca ccg ggt gaa 4824His Asp Asn Val Ala
Ile Leu Pro Thr His Ala Ser Pro Gly Glu 1595 1600 1605 aca ata gtc
att gat ggc aag gaa gta gag gta ctg gat gct aaa 4869Thr Ile Val Ile
Asp Gly Lys Glu Val Glu Val Leu Asp Ala Lys 1610 1615 1620 gcc ctg
gag gac cag gcc ggg acc aac cta gaa atc acc att gtc 4914Ala Leu Glu
Asp Gln Ala Gly Thr Asn Leu Glu Ile Thr Ile Val 1625 1630 1635 act
ctt aag aga aat gag aag ttc agg gac atc aga cca cac atc 4959Thr Leu
Lys Arg Asn Glu Lys Phe Arg Asp Ile Arg Pro His Ile 1640 1645 1650
ccc act caa atc act gag aca aat gat gga gtt tta att gtg aac 5004Pro
Thr Gln Ile Thr Glu Thr Asn Asp Gly Val Leu Ile Val Asn 1655 1660
1665 act agt aag tac ccc aac atg tat gtt cct gtc ggt gct gtg act
5049Thr Ser Lys Tyr Pro Asn Met Tyr Val Pro Val Gly Ala Val Thr
1670 1675 1680 gaa cag ggg tat ctc aat ctc ggt gga cgc caa act gct
cgt act 5094Glu Gln Gly Tyr Leu Asn Leu Gly Gly Arg Gln Thr Ala Arg
Thr 1685 1690 1695 tta atg tac aac ttt cca acg aga gca ggt caa tgt
ggt gga gtt 5139Leu Met Tyr Asn Phe Pro Thr Arg Ala Gly Gln Cys Gly
Gly Val 1700 1705 1710 atc acc tgc act ggc aag gtc atc ggg atg cat
gtt ggt ggg aac 5184Ile Thr Cys Thr Gly Lys Val Ile Gly Met His Val
Gly Gly Asn 1715 1720 1725 ggt tca cat ggg ttc gca gca gcc ctg aag
cga tcc tat ttc act 5229Gly Ser His Gly Phe Ala Ala Ala Leu Lys Arg
Ser Tyr Phe Thr 1730 1735 1740 cag agt caa ggt gaa atc cag tgg atg
aga cca tca aaa gaa gtg 5274Gln Ser Gln Gly Glu Ile Gln Trp Met Arg
Pro Ser Lys Glu Val 1745 1750 1755 ggc tac ccc gtt att aat gct cca
tct aaa act aaa ctg gaa ccc 5319Gly Tyr Pro Val Ile Asn Ala Pro Ser
Lys Thr Lys Leu Glu Pro 1760 1765 1770 agt gca ttc cat tat gtg ttt
gaa ggt gtc aag gaa cca gct gtg 5364Ser Ala Phe His Tyr Val Phe Glu
Gly Val Lys Glu Pro Ala Val 1775 1780 1785 ctc acc aaa agt gac ccc
aga ttg aag aca gat ttt gaa gag gct 5409Leu Thr Lys Ser Asp Pro Arg
Leu Lys Thr Asp Phe Glu Glu Ala 1790 1795 1800 atc ttt tcc aag tat
gtg gga aat aag att act gaa gtg gat gag 5454Ile Phe Ser Lys Tyr Val
Gly Asn Lys Ile Thr Glu Val Asp Glu 1805 1810 1815 tac atg aaa gaa
gct gtc gat cat tac gca ggc cag ctc atg tca 5499Tyr Met Lys Glu Ala
Val Asp His Tyr Ala Gly Gln Leu Met Ser 1820 1825 1830 cta gac atc
aac aca gaa caa atg tgc ctt gag gat gca atg tat 5544Leu Asp Ile Asn
Thr Glu Gln Met Cys Leu Glu Asp Ala Met Tyr 1835 1840 1845 ggc act
gac ggt ctc gaa gct cta gac ctc agt acc agt gct ggg 5589Gly Thr Asp
Gly Leu Glu Ala Leu Asp Leu Ser Thr Ser Ala Gly 1850 1855 1860 tat
ccc tat gtg gca atg ggg aaa aag aaa aga gac att ttg aat 5634Tyr Pro
Tyr Val Ala Met Gly Lys Lys Lys Arg Asp Ile Leu Asn 1865 1870 1875
aag caa acc aga gac aca aag gaa atg caa agg ctt ctg gac acc 5679Lys
Gln Thr Arg Asp Thr Lys Glu Met Gln Arg Leu Leu Asp Thr 1880 1885
1890 tat ggt att aat tta cct tta gtc acc tat gtg aaa gat gag ctt
5724Tyr Gly Ile Asn Leu Pro Leu Val Thr Tyr Val Lys Asp Glu Leu
1895 1900 1905 aga tcc aag acc aaa gtg gaa cag ggc aag tcc agg cta
att gag 5769Arg Ser Lys Thr Lys Val Glu Gln Gly Lys Ser Arg Leu Ile
Glu 1910 1915 1920 gcc tca agt ctc aat gac tct gtc gcc atg agg atg
gct ttt ggc 5814Ala Ser Ser Leu Asn Asp Ser Val Ala Met Arg Met Ala
Phe Gly 1925 1930 1935 aac ttg tac gca gca ttc cac aag aac cca ggt
gta gtg aca gga 5859Asn Leu Tyr Ala Ala Phe His Lys Asn Pro Gly Val
Val Thr Gly 1940 1945 1950 tcg gct gtt ggc tgt gac cca gat ttg ttt
tgg agt aaa ata cca 5904Ser Ala Val Gly Cys Asp Pro Asp Leu Phe Trp
Ser Lys Ile Pro 1955 1960 1965 gtc ctc atg gag gaa aaa ctc ttt gca
ttt gat tac acg ggt tat 5949Val Leu Met Glu Glu Lys Leu Phe Ala Phe
Asp Tyr Thr Gly Tyr 1970 1975 1980 gat gct tca cta agc ccc gcc tgg
ttt gag gct ctc aag atg gtt 5994Asp Ala Ser Leu Ser Pro Ala Trp Phe
Glu Ala Leu Lys Met Val 1985 1990 1995 cta gag aaa att ggg ttt ggt
gac aga gtg gat tac att gat tat 6039Leu Glu Lys Ile Gly Phe Gly Asp
Arg Val Asp Tyr Ile Asp Tyr 2000 2005 2010 ctg aat cac tcg cac cat
cta tat aaa aat aag aca tat tgt gtt 6084Leu Asn His Ser His His Leu
Tyr Lys Asn Lys Thr Tyr Cys Val 2015 2020 2025 aag ggc ggc atg cca
tct ggc tgc tct ggc acc tca att ttt aat 6129Lys Gly Gly Met Pro Ser
Gly Cys Ser Gly Thr Ser Ile Phe Asn 2030 2035 2040 tca atg att aat
aat cta ata atc agg act ctc tta ctg aaa acc 6174Ser Met Ile Asn Asn
Leu Ile Ile Arg Thr Leu Leu Leu Lys Thr 2045 2050 2055 tac aag ggc
ata gat tta gac cac ctg aag atg ata gcc tat ggt 6219Tyr Lys Gly Ile
Asp Leu Asp His Leu Lys Met Ile Ala Tyr Gly 2060 2065 2070 gat gat
gta att gct tcc tac ccc cat gag gtt gat gct agt ctc 6264Asp Asp Val
Ile Ala Ser Tyr Pro His Glu Val Asp Ala Ser Leu 2075 2080 2085 cta
gcc caa tca gga aaa gac tat gga cta acc atg aca cca gct 6309Leu Ala
Gln Ser Gly Lys Asp Tyr Gly Leu Thr Met Thr Pro Ala 2090 2095 2100
gac aaa tca gcc acc ttt gaa aca gtc aca tgg gag aat gta aca 6354Asp
Lys Ser Ala Thr Phe Glu Thr Val Thr Trp Glu Asn Val Thr 2105 2110
2115 ttc ttg aaa aga ttc ttt aga gca gat gaa aag tat ccc ttt ctg
6399Phe Leu Lys Arg Phe Phe Arg Ala Asp Glu Lys Tyr Pro Phe Leu
2120 2125 2130 gta cat cca gtg atg cca atg aaa gaa att cac gaa tca
att aga 6444Val His Pro Val Met Pro Met Lys Glu Ile His Glu Ser Ile
Arg 2135 2140 2145 tgg act aaa gat ccc aga aac act cag gat cat gtt
cgc tca ctg 6489Trp Thr Lys Asp Pro Arg Asn Thr Gln Asp His Val Arg
Ser Leu 2150 2155 2160 tgc tta ttg gct tgg cac aat ggc gag gaa gag
tac aat aaa ttt 6534Cys Leu Leu Ala Trp His Asn Gly Glu Glu Glu Tyr
Asn Lys Phe 2165 2170 2175 tta gct aag att aga agt gtg cca atc gga
aga gca tta ctg ctc 6579Leu Ala Lys Ile Arg Ser Val Pro Ile Gly Arg
Ala Leu Leu Leu 2180 2185 2190 cct gag tac tcc aca ttg tac cgc cgt
tgg ctc gac tca ttt 6621Pro Glu Tyr Ser Thr Leu Tyr Arg Arg Trp Leu
Asp Ser Phe 2195 2200 2205 72207PRTHuman poliovirus 2 7Met Gly Ala
Gln Val Ser Ser Gln Lys Val Gly Ala His Glu Asn Ser 1 5 10 15 Asn
Arg Ala Tyr Gly Gly Ser Thr Ile Asn Tyr Thr Thr Ile Asn Tyr 20 25
30 Tyr Arg Asp Ser Ala Ser Asn Ala Ala Ser Lys Gln Asp Phe Ala Gln
35 40 45 Asp Pro Ser Lys Phe Thr Glu Pro Ile Lys Asp Val Leu Ile
Lys Thr 50 55 60 Ala Pro Thr Leu Asn Ser Pro Asn Ile Glu Ala
Cys
Gly Tyr Ser Asp 65 70 75 80 Arg Val Met Gln Leu Thr Leu Gly Asn Ser
Thr Ile Thr Thr Gln Glu 85 90 95 Ala Ala Asn Ser Val Val Ala Tyr
Gly Arg Trp Pro Glu Tyr Ile Lys 100 105 110 Asp Ser Glu Ala Asn Pro
Val Asp Gln Pro Thr Glu Pro Asp Val Ala 115 120 125 Ala Cys Arg Phe
Tyr Thr Leu Asp Thr Val Thr Trp Arg Lys Glu Ser 130 135 140 Arg Gly
Trp Trp Trp Lys Leu Pro Asp Ala Leu Lys Asp Met Gly Leu 145 150 155
160 Phe Gly Gln Asn Met Phe Tyr His Tyr Leu Gly Arg Ala Gly Tyr Thr
165 170 175 Val His Val Gln Cys Asn Ala Ser Lys Phe His Gln Gly Ala
Leu Gly 180 185 190 Val Phe Ala Val Pro Glu Met Cys Leu Ala Gly Asp
Ser Thr Thr His 195 200 205 Met Phe Thr Lys Tyr Glu Asn Ala Asn Pro
Gly Glu Lys Gly Gly Glu 210 215 220 Phe Lys Gly Ser Phe Thr Leu Asp
Thr Asn Ala Thr Asn Pro Ala Arg 225 230 235 240 Asn Phe Cys Pro Val
Asp Tyr Leu Phe Gly Ser Gly Val Leu Ala Gly 245 250 255 Asn Ala Phe
Val Tyr Pro His Gln Ile Ile Asn Leu Arg Thr Asn Asn 260 265 270 Cys
Ala Thr Leu Val Leu Pro Tyr Val Asn Ser Leu Ser Ile Asp Ser 275 280
285 Met Thr Lys His Asn Asn Trp Gly Ile Ala Ile Leu Pro Leu Ala Pro
290 295 300 Leu Asp Phe Ala Thr Glu Ser Ser Thr Glu Ile Pro Ile Thr
Leu Thr 305 310 315 320 Ile Ala Pro Met Cys Cys Glu Phe Asn Gly Leu
Arg Asn Ile Thr Val 325 330 335 Pro Arg Thr Gln Gly Leu Pro Val Leu
Asn Thr Pro Gly Ser Asn Gln 340 345 350 Tyr Leu Thr Ala Asp Asn Tyr
Gln Ser Pro Cys Ala Ile Pro Glu Phe 355 360 365 Asp Val Thr Pro Pro
Ile Asp Ile Pro Gly Glu Val Arg Asn Met Met 370 375 380 Glu Leu Ala
Glu Ile Asp Thr Met Ile Pro Leu Asn Leu Thr Asn Gln 385 390 395 400
Arg Lys Asn Thr Met Asp Met Tyr Arg Val Glu Leu Asn Asp Ala Ala 405
410 415 His Ser Asp Thr Pro Ile Leu Cys Leu Ser Leu Ser Pro Ala Ser
Asp 420 425 430 Pro Arg Leu Ala His Thr Met Leu Gly Glu Ile Leu Asn
Tyr Tyr Thr 435 440 445 His Trp Ala Gly Ser Leu Lys Phe Thr Phe Leu
Phe Cys Gly Ser Met 450 455 460 Met Ala Thr Gly Lys Leu Leu Val Ser
Tyr Ala Pro Pro Gly Ala Glu 465 470 475 480 Ala Pro Lys Ser Arg Lys
Glu Ala Met Leu Gly Thr His Val Ile Trp 485 490 495 Asp Ile Gly Leu
Gln Ser Ser Cys Thr Met Val Val Pro Trp Ile Ser 500 505 510 Asn Thr
Thr Tyr Arg Gln Thr Ile Asn Asp Ser Phe Thr Glu Gly Gly 515 520 525
Tyr Ile Ser Met Phe Tyr Gln Thr Arg Val Val Val Pro Leu Ser Thr 530
535 540 Pro Arg Lys Met Asp Ile Leu Gly Phe Val Ser Ala Cys Asn Asp
Phe 545 550 555 560 Ser Val Arg Leu Leu Arg Asp Thr Thr His Ile Ser
Gln Glu Ala Met 565 570 575 Pro Gln Gly Leu Gly Asp Leu Ile Glu Gly
Val Val Glu Gly Val Thr 580 585 590 Arg Asn Ala Leu Thr Pro Leu Thr
Pro Ala Asn Asn Leu Pro Asp Thr 595 600 605 Gln Ser Ser Gly Pro Ala
His Ser Lys Glu Thr Pro Ala Leu Thr Ala 610 615 620 Val Glu Thr Gly
Ala Thr Asn Pro Leu Val Pro Ser Asp Thr Val Gln 625 630 635 640 Thr
Arg His Val Ile Gln Lys Arg Thr Arg Ser Glu Ser Thr Val Glu 645 650
655 Ser Phe Phe Ala Arg Gly Ala Cys Val Ala Ile Ile Glu Val Asp Asn
660 665 670 Asp Ala Pro Thr Lys Arg Ala Ser Lys Leu Phe Ser Val Trp
Lys Ile 675 680 685 Thr Tyr Lys Asp Thr Val Gln Leu Arg Arg Lys Leu
Glu Phe Phe Thr 690 695 700 Tyr Ser Arg Phe Asp Met Glu Phe Thr Phe
Val Val Thr Ser Asn Tyr 705 710 715 720 Thr Asp Ala Asn Asn Gly His
Ala Leu Asn Gln Val Tyr Gln Ile Met 725 730 735 Tyr Ile Pro Pro Gly
Ala Pro Ile Pro Gly Lys Trp Asn Asp Tyr Thr 740 745 750 Trp Gln Thr
Ser Ser Asn Pro Ser Val Phe Tyr Thr Tyr Gly Ala Pro 755 760 765 Pro
Ala Arg Ile Ser Val Pro Tyr Val Gly Ile Ala Asn Ala Tyr Ser 770 775
780 His Phe Tyr Asp Gly Phe Ala Lys Val Pro Leu Ala Gly Gln Ala Ser
785 790 795 800 Thr Glu Gly Asp Ser Leu Tyr Gly Ala Ala Ser Leu Asn
Asp Phe Gly 805 810 815 Ser Leu Ala Val Arg Val Val Asn Asp His Asn
Pro Thr Lys Leu Thr 820 825 830 Ser Lys Ile Arg Val Tyr Met Lys Pro
Lys His Val Arg Val Trp Cys 835 840 845 Pro Arg Pro Pro Arg Ala Val
Pro Tyr Tyr Gly Pro Gly Val Asp Tyr 850 855 860 Lys Asp Gly Leu Ala
Pro Leu Pro Glu Lys Gly Leu Thr Thr Tyr Gly 865 870 875 880 Phe Gly
His Gln Asn Lys Ala Val Tyr Thr Ala Gly Tyr Lys Ile Cys 885 890 895
Asn Tyr His Leu Ala Thr Gln Glu Asp Leu Gln Asn Ala Val Asn Ile 900
905 910 Met Trp Ile Arg Asp Leu Leu Val Val Glu Ser Lys Ala Gln Gly
Ile 915 920 925 Asp Ser Ile Ala Arg Cys Asn Cys His Thr Gly Val Tyr
Tyr Cys Glu 930 935 940 Ser Arg Arg Lys Tyr Tyr Pro Val Ser Phe Thr
Gly Pro Thr Phe Gln 945 950 955 960 Tyr Met Glu Ala Asn Glu Tyr Tyr
Pro Ala Arg Tyr Gln Ser His Met 965 970 975 Leu Ile Gly His Gly Phe
Ala Ser Pro Gly Asp Cys Gly Gly Ile Leu 980 985 990 Arg Cys Gln His
Gly Val Ile Gly Ile Ile Thr Ala Gly Gly Glu Gly 995 1000 1005 Leu
Val Ala Phe Ser Asp Ile Arg Asp Leu Tyr Ala Tyr Glu Glu 1010 1015
1020 Glu Ala Met Glu Gln Gly Val Ser Asn Tyr Ile Glu Ser Leu Gly
1025 1030 1035 Ala Ala Phe Gly Ser Gly Phe Thr Gln Gln Ile Gly Asn
Lys Ile 1040 1045 1050 Ser Glu Leu Thr Ser Met Val Thr Ser Thr Ile
Thr Glu Lys Leu 1055 1060 1065 Leu Lys Asn Leu Ile Lys Ile Ile Ser
Ser Leu Val Ile Ile Thr 1070 1075 1080 Arg Asn Tyr Glu Asp Thr Thr
Thr Val Leu Ala Thr Leu Ala Leu 1085 1090 1095 Leu Gly Cys Asp Ala
Ser Pro Trp Gln Trp Leu Lys Lys Lys Ala 1100 1105 1110 Cys Asp Ile
Leu Glu Ile Pro Tyr Ile Met Arg Gln Gly Asp Ser 1115 1120 1125 Trp
Leu Lys Lys Phe Thr Glu Ala Cys Asn Ala Ala Lys Gly Leu 1130 1135
1140 Glu Trp Val Ser Asn Lys Ile Ser Lys Phe Ile Asp Trp Leu Lys
1145 1150 1155 Glu Lys Ile Ile Pro Gln Ala Arg Asp Lys Leu Glu Phe
Val Thr 1160 1165 1170 Lys Leu Lys Gln Leu Glu Met Leu Glu Asn Gln
Ile Ala Thr Ile 1175 1180 1185 His Gln Ser Cys Pro Ser Gln Glu His
Gln Glu Ile Leu Phe Asn 1190 1195 1200 Asn Val Arg Trp Leu Ser Ile
Gln Ser Lys Arg Phe Ala Pro Leu 1205 1210 1215 Tyr Ala Val Glu Ala
Lys Arg Ile Gln Lys Leu Glu His Thr Ile 1220 1225 1230 Asn Asn Tyr
Val Gln Phe Lys Ser Lys His Arg Ile Glu Pro Val 1235 1240 1245 Cys
Leu Leu Val His Gly Ser Pro Gly Thr Gly Lys Ser Val Ala 1250 1255
1260 Thr Asn Leu Ile Ala Arg Ala Ile Ala Glu Lys Glu Asn Thr Ser
1265 1270 1275 Thr Tyr Ser Leu Pro Pro Asp Pro Ser His Phe Asp Gly
Tyr Lys 1280 1285 1290 Gln Gln Gly Val Val Ile Met Asp Asp Leu Asn
Gln Asn Pro Asp 1295 1300 1305 Gly Ala Asp Met Lys Leu Phe Cys Gln
Met Val Ser Thr Val Glu 1310 1315 1320 Phe Ile Pro Pro Met Ala Ser
Leu Glu Glu Lys Gly Ile Leu Phe 1325 1330 1335 Thr Ser Asn Tyr Val
Leu Ala Ser Thr Asn Ser Ser Arg Ile Thr 1340 1345 1350 Pro Pro Thr
Val Ala His Ser Asp Ala Leu Ala Arg Arg Phe Ala 1355 1360 1365 Phe
Asp Met Asp Ile Gln Ile Met Ser Glu Tyr Ser Arg Asp Gly 1370 1375
1380 Lys Leu Asn Met Ala Met Ala Thr Glu Met Cys Lys Asn Cys His
1385 1390 1395 Gln Pro Ala Asn Phe Lys Arg Cys Cys Pro Leu Val Cys
Gly Lys 1400 1405 1410 Ala Ile Gln Leu Met Asp Lys Ser Ser Arg Val
Arg Tyr Ser Ile 1415 1420 1425 Asp Gln Ile Thr Thr Met Ile Ile Asn
Glu Arg Asn Arg Arg Ser 1430 1435 1440 Ser Ile Gly Asn Cys Met Glu
Ala Leu Phe Gln Gly Pro Leu Gln 1445 1450 1455 Tyr Lys Asp Leu Lys
Ile Asp Ile Lys Thr Thr Pro Pro Pro Glu 1460 1465 1470 Cys Ile Asn
Asp Leu Leu Gln Ala Val Asp Ser Gln Glu Val Arg 1475 1480 1485 Asp
Tyr Cys Glu Lys Lys Gly Trp Ile Val Asp Ile Thr Ser Gln 1490 1495
1500 Val Gln Thr Glu Arg Asn Ile Asn Arg Ala Met Thr Ile Leu Gln
1505 1510 1515 Ala Val Thr Thr Phe Ala Ala Val Ala Gly Val Val Tyr
Val Met 1520 1525 1530 Tyr Lys Leu Phe Ala Gly His Gln Gly Ala Tyr
Thr Gly Leu Pro 1535 1540 1545 Asn Lys Arg Pro Asn Val Pro Thr Ile
Arg Thr Ala Lys Val Gln 1550 1555 1560 Gly Pro Gly Phe Asp Tyr Ala
Val Ala Met Ala Lys Arg Asn Ile 1565 1570 1575 Leu Thr Ala Thr Thr
Ile Lys Gly Glu Phe Thr Met Leu Gly Val 1580 1585 1590 His Asp Asn
Val Ala Ile Leu Pro Thr His Ala Ser Pro Gly Glu 1595 1600 1605 Thr
Ile Val Ile Asp Gly Lys Glu Val Glu Val Leu Asp Ala Lys 1610 1615
1620 Ala Leu Glu Asp Gln Ala Gly Thr Asn Leu Glu Ile Thr Ile Val
1625 1630 1635 Thr Leu Lys Arg Asn Glu Lys Phe Arg Asp Ile Arg Pro
His Ile 1640 1645 1650 Pro Thr Gln Ile Thr Glu Thr Asn Asp Gly Val
Leu Ile Val Asn 1655 1660 1665 Thr Ser Lys Tyr Pro Asn Met Tyr Val
Pro Val Gly Ala Val Thr 1670 1675 1680 Glu Gln Gly Tyr Leu Asn Leu
Gly Gly Arg Gln Thr Ala Arg Thr 1685 1690 1695 Leu Met Tyr Asn Phe
Pro Thr Arg Ala Gly Gln Cys Gly Gly Val 1700 1705 1710 Ile Thr Cys
Thr Gly Lys Val Ile Gly Met His Val Gly Gly Asn 1715 1720 1725 Gly
Ser His Gly Phe Ala Ala Ala Leu Lys Arg Ser Tyr Phe Thr 1730 1735
1740 Gln Ser Gln Gly Glu Ile Gln Trp Met Arg Pro Ser Lys Glu Val
1745 1750 1755 Gly Tyr Pro Val Ile Asn Ala Pro Ser Lys Thr Lys Leu
Glu Pro 1760 1765 1770 Ser Ala Phe His Tyr Val Phe Glu Gly Val Lys
Glu Pro Ala Val 1775 1780 1785 Leu Thr Lys Ser Asp Pro Arg Leu Lys
Thr Asp Phe Glu Glu Ala 1790 1795 1800 Ile Phe Ser Lys Tyr Val Gly
Asn Lys Ile Thr Glu Val Asp Glu 1805 1810 1815 Tyr Met Lys Glu Ala
Val Asp His Tyr Ala Gly Gln Leu Met Ser 1820 1825 1830 Leu Asp Ile
Asn Thr Glu Gln Met Cys Leu Glu Asp Ala Met Tyr 1835 1840 1845 Gly
Thr Asp Gly Leu Glu Ala Leu Asp Leu Ser Thr Ser Ala Gly 1850 1855
1860 Tyr Pro Tyr Val Ala Met Gly Lys Lys Lys Arg Asp Ile Leu Asn
1865 1870 1875 Lys Gln Thr Arg Asp Thr Lys Glu Met Gln Arg Leu Leu
Asp Thr 1880 1885 1890 Tyr Gly Ile Asn Leu Pro Leu Val Thr Tyr Val
Lys Asp Glu Leu 1895 1900 1905 Arg Ser Lys Thr Lys Val Glu Gln Gly
Lys Ser Arg Leu Ile Glu 1910 1915 1920 Ala Ser Ser Leu Asn Asp Ser
Val Ala Met Arg Met Ala Phe Gly 1925 1930 1935 Asn Leu Tyr Ala Ala
Phe His Lys Asn Pro Gly Val Val Thr Gly 1940 1945 1950 Ser Ala Val
Gly Cys Asp Pro Asp Leu Phe Trp Ser Lys Ile Pro 1955 1960 1965 Val
Leu Met Glu Glu Lys Leu Phe Ala Phe Asp Tyr Thr Gly Tyr 1970 1975
1980 Asp Ala Ser Leu Ser Pro Ala Trp Phe Glu Ala Leu Lys Met Val
1985 1990 1995 Leu Glu Lys Ile Gly Phe Gly Asp Arg Val Asp Tyr Ile
Asp Tyr 2000 2005 2010 Leu Asn His Ser His His Leu Tyr Lys Asn Lys
Thr Tyr Cys Val 2015 2020 2025 Lys Gly Gly Met Pro Ser Gly Cys Ser
Gly Thr Ser Ile Phe Asn 2030 2035 2040 Ser Met Ile Asn Asn Leu Ile
Ile Arg Thr Leu Leu Leu Lys Thr 2045 2050 2055 Tyr Lys Gly Ile Asp
Leu Asp His Leu Lys Met Ile Ala Tyr Gly 2060 2065 2070 Asp Asp Val
Ile Ala Ser Tyr Pro His Glu Val Asp Ala Ser Leu 2075 2080 2085 Leu
Ala Gln Ser Gly Lys Asp Tyr Gly Leu Thr Met Thr Pro Ala 2090 2095
2100 Asp Lys Ser Ala Thr Phe Glu Thr Val Thr Trp Glu Asn Val Thr
2105 2110 2115 Phe Leu Lys Arg Phe Phe Arg Ala Asp Glu Lys Tyr Pro
Phe Leu 2120 2125 2130 Val His Pro Val Met Pro Met Lys Glu Ile His
Glu Ser Ile Arg 2135 2140 2145 Trp Thr Lys Asp Pro Arg Asn Thr Gln
Asp His Val Arg Ser Leu 2150 2155 2160 Cys Leu Leu Ala Trp His Asn
Gly Glu Glu Glu Tyr Asn Lys Phe 2165 2170 2175 Leu Ala Lys Ile Arg
Ser Val Pro Ile Gly Arg Ala Leu Leu Leu 2180 2185 2190 Pro Glu Tyr
Ser Thr Leu Tyr Arg Arg Trp Leu Asp Ser Phe 2195 2200 2205
86621DNAArtificialdeoptimized MEF1 sequence 8atgggcgccc aagtctcatc
acagaaagtt ggagcccatg agaattcaaa ccgggcttat 60ggcggatcca ccattaatta
cactactatt aattattacc gggattctgc gagcaatgcc 120gctagtaagc
aggactttgc acaagaccca tccaagttca ctgaacctat taaagatgtt
180ctcattaaga ccgctcccac gctaaactct cctaatatcg aggcgtgtgg
gtatagcgac 240cgggtgatgc aactaaccct aggcaattcc accattacca
cacaggaggc ggccaattct 300gtcgttgcat acggccggtg gcccgagtac
atcaaggact cagaagcaaa tcctgtggac 360cagccaactg aaccggacgt
tgccgcgtgc cggttttaca cactagacac tgttacttgg 420cggaaggagt
cccgggggtg gtggtggaaa ctgcctgatg cactaaagga catgggatta
480ttcggccaga acatgttcta ccactacctc gggcgggctg gctatactgt
gcacgtacag 540tgtaatgctt caaagtttca ccagggcgcc ctcggggtat
tcgcagttcc agaaatgtgc 600ctggcaggcg acagcacaac ccacatgttt
acaaaatatg agaatgcaaa tccgggtgag 660aaagggggtg
aattcaaagg gagttttact ctggatacta acgctaccaa ccctgcacgg
720aacttttgtc ccgttgatta tctcttcggg agcggagtac tggcgggaaa
tgcgtttgtt 780tacccacatc agataattaa tctgcggacc aacaactgtg
ccacgttggt gctgccatac 840gttaattcac tttccataga cagcatgaca
aaacacaaca attggggaat tgctatcctt 900ccgctggcac cacttgactt
tgccaccgag tcctccactg agatacccat tactctaact 960attgccccta
tgtgttgtga attcaatggg ttgcggaaca tcactgtacc ccggactcaa
1020gggttgccag tcttaaacac tccaggaagc aaccagtact taacagcaga
caactatcaa 1080tccccatgtg cgatacccga gtttgatgta acaccaccca
tagacatccc gggggaagtg 1140cggaacatga tggaattggc agagatagac
accatgatac ctctcaatct gacgaaccag 1200cggaagaaca ccatggatat
gtaccgggtc gaactgaatg atgcggctca ctctgacaca 1260ccaatattgt
gtctctcact gtctccagca tcagatcctc ggctagcaca cactatgcta
1320ggtgaaatac tgaactacta cacacactgg gcagggtcat tgaagttcac
atttctcttc 1380tgcggctcaa tgatggccac tggtaaattg ctagtgtcct
atgcacctcc tggtgcggaa 1440gcccctaaaa gccggaaaga agcgatgctc
ggcacccacg tgatctggga catcggatta 1500cagtcatcat gcactatggt
ggtaccttgg attagcaaca ccacataccg gcaaaccatc 1560aacgatagct
tcacagaagg agggtacatc agtatgtttt accaaactcg ggttgttgtg
1620ccattgtcca cccctcggaa gatggacata ttgggctttg tgtcagcctg
caatgacttc 1680agtgtgcggc tgttgcggga cacgacgcac ataagccaag
aggctatgcc acaaggattg 1740ggtgatttaa ttgaaggggt tgttgaggga
gtcacgcgga atgccttgac accactgaca 1800cctgccaaca acttgcctga
tacacaatct agcggcccag cccactctaa ggaaacacca 1860gcgctaacag
ccgtagagac aggggccacc aacccattgg tgccttcaga cacggtacaa
1920actcggcacg tcatccaaaa gcggacgcgg tcggagtcta cggttgagtc
tttcttcgca 1980cggggagctt gtgtggccat tattgaagtg gataatgatg
ctccaacaaa gcgggccagt 2040aaattatttt cagtctggaa gataacttac
aaagacaccg ttcagttacg gcggaagttg 2100gagttcttta catattcacg
gtttgacatg gagttcacct ttgtggttac atccaattat 2160accgatgcaa
acaatgggca cgcactaaat caagtttacc agataatgta cataccacct
2220ggggcaccga tccctggcaa gtggaatgat tacacatggc aaacgtcatc
taacccatca 2280gtgttttaca cttacggggc acctccagct cggatatcag
tgccctacgt gggcattgcc 2340aatgcatatt ctcattttta cgatgggttt
gccaaagtac cactagcagg ccaagcctca 2400acagagggtg actcgctgta
tggagcggct tcattgaatg acttcggatc actggctgtt 2460cgggtggtga
atgaccacaa ccctacgaaa ctcacttcaa aaatccgggt gtacatgaaa
2520ccaaagcacg tccgggtgtg gtgtccgcgg ccccctcggg cagtcccata
ctacggacca 2580ggggttgact acaaggatgg actagcccca ctgccagaga
aaggcttgac aacctatggt 2640tttggccacc aaaataaggc agtgtacacg
gcaggttaca aaatttgcaa ttaccacctc 2700gccacccagg aagacttaca
aaatgcggta aacattatgt ggattcggga ccttttagta 2760gtggaatcca
aagcccaagg catagactca attgctcggt gtaactgcca cactggagtg
2820tactactgtg aatcccggcg gaagtactac ccggtctctt ttactggccc
cacctttcag 2880tacatggaag caaatgagta ctatccagcc cggtaccaat
cccacatgtt aattggccat 2940ggttttgcat ctccagggga ctgtggtggg
attctccggt gccaacatgg agtaattgga 3000atcattacag ctggaggaga
aggcctagtc gctttctcgg acatccggga tctgtacgca 3060tacgaggagg
aggctatgga gcagggagtc tccaactata ttgagtccct tggggctgca
3120tttgggagtg gattcaccca gcaaatagga aacaaaattt cagaactcac
tagcatggtc 3180accagcacta taactgagaa actactaaag aatctcatta
aaataatttc atcccttgtt 3240atcatcaccc ggaactatga agacacgacc
acagtgctgg ctacccttgc tctcctcggt 3300tgtgatgcgt ccccatggca
atggctaaag aagaaagcct gtgacatctt ggaaatcccc 3360tacatcatgc
ggcagggcga tagctggttg aagaagttta cagaggcatg caatgcagcc
3420aagggattgg aatgggtgtc taataaaata tccaaattta ttgactggct
caaagagaag 3480atcattccac aggctcggga caagctagag tttgttacca
aactgaagca actagaaatg 3540ttggagaacc aaattgcaac cattcatcaa
tcgtgcccaa gtcaggagca tcaagaaatc 3600ctgttcaata acgtgcggtg
gttatccata cagtcaaagc ggtttgcccc gctctatgcg 3660gttgaggcta
agcggataca aaagttagag cacacgatta acaactacgt acagttcaag
3720agcaaacacc ggattgaacc agtatgtttg ttggtgcacg gtagcccagg
cacgggcaag 3780tcagttgcca ccaatttaat tgcccgggca atagcagaga
aggagaacac ctccacatac 3840tcactaccac cagatccctc ccatttcgat
gggtacaagc aacaaggtgt ggtgatcatg 3900gatgatttga atcagaaccc
agacggagca gacatgaagc tgttttgtca gatggtctcc 3960actgtagaat
tcataccacc aatggcttcg ctagaagaaa agggtatttt gttcacatct
4020aattacgttt tggcctcaac caattccagt cggatcaccc caccaactgt
tgcgcacagc 4080gatgccctag cccggcggtt tgcatttgac atggacatac
aaatcatgag cgagtattct 4140cgggatggaa aattgaacat ggcgatggca
actgaaatgt gtaagaactg tcatcaacca 4200gcaaacttca agcggtgttg
cccattggtg tgtggcaaag ccatccagct gatggacaaa 4260tcttcccggg
tccggtatag tatagatcag attactacca tgattattaa tgagcggaac
4320cggcggtcaa gtatcggtaa ttgcatggag gcacttttcc aaggtcctct
tcaatacaaa 4380gacctgaaaa tagacattaa gaccacacct cctcctgagt
gcatcaatga tttgctccaa 4440gcagttgatt ctcaagaggt acgggactac
tgtgagaaga agggttggat agtagacatc 4500actagtcagg tgcaaaccga
acggaacatc aatcgggcaa tgactattct tcaggcggtc 4560accacatttg
ccgcagttgc tggagtggtg tatgtgatgt acaaactctt tgcagggcat
4620caaggagcgt atacagggct tcccaataag cggcccaatg tccccaccat
ccggactgcc 4680aaggttcagg gcccaggatt tgactacgca gtggcaatgg
ccaaacggaa cattcttacg 4740gcaactacca ttaagggaga gttcacaatg
ctcggagtgc atgataatgt ggccattcta 4800ccaacccacg catcaccggg
tgaaacaata gtcattgatg gcaaggaagt agaggtactg 4860gatgctaaag
ccctggagga ccaggccggg accaacctag aaatcaccat tgtcactctt
4920aagcggaatg agaagttccg ggacatccgg ccacacatcc ccactcaaat
cactgagaca 4980aatgatggag ttttaattgt gaacactagt aagtacccca
acatgtatgt tcctgtcggt 5040gctgtgactg aacaggggta tctcaatctc
ggtggacggc aaactgctcg gactttaatg 5100tacaactttc caacgcgggc
aggtcaatgt ggtggagtta tcacctgcac tggcaaggtc 5160atcgggatgc
atgttggtgg gaacggttca catgggttcg cagcagccct gaagcggtcc
5220tatttcactc agagtcaagg tgaaatccag tggatgcggc catcaaaaga
agtgggctac 5280cccgttatta atgctccatc taaaactaaa ctggaaccca
gtgcattcca ttatgtgttt 5340gaaggtgtca aggaaccagc tgtgctcacc
aaaagtgacc cccggttgaa gacagatttt 5400gaagaggcta tcttttccaa
gtatgtggga aataagatta ctgaagtgga tgagtacatg 5460aaagaagctg
tcgatcatta cgcaggccag ctcatgtcac tagacatcaa cacagaacaa
5520atgtgccttg aggatgcaat gtatggcact gacggtctcg aagctctaga
cctcagtacc 5580agtgctgggt atccctatgt ggcaatgggg aaaaagaaac
gggacatttt gaataagcaa 5640acccgggaca caaaggaaat gcaacggctt
ctggacacct atggtattaa tttaccttta 5700gtcacctatg tgaaagatga
gcttcggtcc aagaccaaag tggaacaggg caagtcccgg 5760ctaattgagg
cctcaagtct caatgactct gtcgccatgc ggatggcttt tggcaacttg
5820tacgcagcat tccacaagaa cccaggtgta gtgacaggat cggctgttgg
ctgtgaccca 5880gatttgtttt ggagtaaaat accagtcctc atggaggaaa
aactctttgc atttgattac 5940acgggttatg atgcttcact aagccccgcc
tggtttgagg ctctcaagat ggttctagag 6000aaaattgggt ttggtgaccg
ggtggattac attgattatc tgaatcactc gcaccatcta 6060tataaaaata
agacatattg tgttaagggc ggcatgccat ctggctgctc tggcacctca
6120atttttaatt caatgattaa taatctaata atccggactc tcttactgaa
aacctacaag 6180ggcatagatt tagaccacct gaagatgata gcctatggtg
atgatgtaat tgcttcctac 6240ccccatgagg ttgatgctag tctcctagcc
caatcaggaa aagactatgg actaaccatg 6300acaccagctg acaaatcagc
cacctttgaa acagtcacat gggagaatgt aacattcttg 6360aaacggttct
ttcgggcaga tgaaaagtat ccctttctgg tacatccagt gatgccaatg
6420aaagaaattc acgaatcaat tcggtggact aaagatcccc ggaacactca
ggatcatgtt 6480cggtcactgt gcttattggc ttggcacaat ggcgaggaag
agtacaataa atttttagct 6540aagattcgga gtgtgccaat cggacgggca
ttactgctcc ctgagtactc cacattgtac 6600cggcggtggc tcgactcatt t
662192202DNAFoot-and-mouth disease virus - type OCDS(1)..(2202)
9ggc gcc ggg caa tcc agc ccg gcg act ggg tca cag aac cag tca ggc
48Gly Ala Gly Gln Ser Ser Pro Ala Thr Gly Ser Gln Asn Gln Ser Gly 1
5 10 15 aac act gga agc att atc aac aat tac tac atg cag cag tac cag
aac 96Asn Thr Gly Ser Ile Ile Asn Asn Tyr Tyr Met Gln Gln Tyr Gln
Asn 20 25 30 tcc atg gac acg cag ctt ggt gac aac gct att agc gga
ggc tcc aac 144Ser Met Asp Thr Gln Leu Gly Asp Asn Ala Ile Ser Gly
Gly Ser Asn 35 40 45 gag ggg tcc acg gac acc acc tcc act cac aca
acc aac act cag aac 192Glu Gly Ser Thr Asp Thr Thr Ser Thr His Thr
Thr Asn Thr Gln Asn 50 55 60 aat gac tgg ttt tca aag ctg gcc agt
tcc gct ttt agc ggt ctt ttc 240Asn Asp Trp Phe Ser Lys Leu Ala Ser
Ser Ala Phe Ser Gly Leu Phe 65 70 75 80 ggc gct ctt ctt gct gac aag
aaa acc gag gag acc act ctt ctc gag 288Gly Ala Leu Leu Ala Asp Lys
Lys Thr Glu Glu Thr Thr Leu Leu Glu 85 90 95 gac cgc atc ctc act
acc cgc aac gga cac acg acc tcg aca acc cag 336Asp Arg Ile Leu Thr
Thr Arg Asn Gly His Thr Thr Ser Thr Thr Gln 100 105 110 tcg agc gtt
gga gtc act tac ggg tac gca aca gct gag gac ttt gtg 384Ser Ser Val
Gly Val Thr Tyr Gly Tyr Ala Thr Ala Glu Asp Phe Val 115 120 125 agc
gga cca aac aca tct ggg ctt gag acc agg gtt gtg cag gca gag 432Ser
Gly Pro Asn Thr Ser Gly Leu Glu Thr Arg Val Val Gln Ala Glu 130 135
140 cgg ttc ttc aaa acc cac ttg ttc gac tgg gtc acc agt gac ccg ttt
480Arg Phe Phe Lys Thr His Leu Phe Asp Trp Val Thr Ser Asp Pro Phe
145 150 155 160 gga cgg tgc tat ctg ctg gaa ctc cca act gac cac aaa
ggt gtc tac 528Gly Arg Cys Tyr Leu Leu Glu Leu Pro Thr Asp His Lys
Gly Val Tyr 165 170 175 ggc agc ctg acc gac tct tat gct tac atg aga
aac ggt tgg gat gtt 576Gly Ser Leu Thr Asp Ser Tyr Ala Tyr Met Arg
Asn Gly Trp Asp Val 180 185 190 gag gtc acc gca gtg gga aat cag ttc
aac gga gga tgt ctg ttg gtg 624Glu Val Thr Ala Val Gly Asn Gln Phe
Asn Gly Gly Cys Leu Leu Val 195 200 205 gcc atg gtg cca gaa ctt tgc
tct att gac aag aga gag ctg tac cag 672Ala Met Val Pro Glu Leu Cys
Ser Ile Asp Lys Arg Glu Leu Tyr Gln 210 215 220 ctc acg ctc ttt ccc
cac cag ttc atc aac ccc cgg acg aac atg acg 720Leu Thr Leu Phe Pro
His Gln Phe Ile Asn Pro Arg Thr Asn Met Thr 225 230 235 240 gcg cac
atc act gtg ccc ttt gtt ggc gtc aac cgc tac gac cag tac 768Ala His
Ile Thr Val Pro Phe Val Gly Val Asn Arg Tyr Asp Gln Tyr 245 250 255
aag gta cac aaa cct tgg acc ctc gtg gtt atg gtt gtg gcc ccg ctg
816Lys Val His Lys Pro Trp Thr Leu Val Val Met Val Val Ala Pro Leu
260 265 270 act gtc aac acc gaa ggt gcc cca cag atc aag gtc tat gcc
aac atc 864Thr Val Asn Thr Glu Gly Ala Pro Gln Ile Lys Val Tyr Ala
Asn Ile 275 280 285 gcc cct acc aac gtg cac gtt gcg ggt gag ttc cct
tct aag gaa ggg 912Ala Pro Thr Asn Val His Val Ala Gly Glu Phe Pro
Ser Lys Glu Gly 290 295 300 atc ttc ccc gtg gca tgt agc gac ggt tac
ggt ggt ctg gtg acc act 960Ile Phe Pro Val Ala Cys Ser Asp Gly Tyr
Gly Gly Leu Val Thr Thr 305 310 315 320 gac cca aag acg gct gac ccc
gcc tac ggg aaa gtg ttc aat cca cct 1008Asp Pro Lys Thr Ala Asp Pro
Ala Tyr Gly Lys Val Phe Asn Pro Pro 325 330 335 cgc aac atg ttg ccg
ggg cgg ttc acc aac ttc ctt gat gtg gct gag 1056Arg Asn Met Leu Pro
Gly Arg Phe Thr Asn Phe Leu Asp Val Ala Glu 340 345 350 gcg tgc cct
acg ttt ctg cac ttt gag ggt ggc gtg ccg tac gtg acc 1104Ala Cys Pro
Thr Phe Leu His Phe Glu Gly Gly Val Pro Tyr Val Thr 355 360 365 aca
aag acg gac tca gac agg gtg ctc gcc cag ttc gac ttg tct ctg 1152Thr
Lys Thr Asp Ser Asp Arg Val Leu Ala Gln Phe Asp Leu Ser Leu 370 375
380 gca gca aag cac atg tca aac acc ttc ctg gca ggt ctc gcc cag tac
1200Ala Ala Lys His Met Ser Asn Thr Phe Leu Ala Gly Leu Ala Gln Tyr
385 390 395 400 tac aca cag tac agc ggc acc atc aac ctg cac ttc atg
ttc aca gga 1248Tyr Thr Gln Tyr Ser Gly Thr Ile Asn Leu His Phe Met
Phe Thr Gly 405 410 415 ccc act gac gcg aaa gcg cgt tac atg att gca
tac gcc ccc cct ggt 1296Pro Thr Asp Ala Lys Ala Arg Tyr Met Ile Ala
Tyr Ala Pro Pro Gly 420 425 430 atg gag ccg ccc aaa aca cct gag gcg
gcc gcc cac tgc att cat gcg 1344Met Glu Pro Pro Lys Thr Pro Glu Ala
Ala Ala His Cys Ile His Ala 435 440 445 gag tgg gac aca ggg ttg aat
tca aaa ttc aca ttt tca atc cct tac 1392Glu Trp Asp Thr Gly Leu Asn
Ser Lys Phe Thr Phe Ser Ile Pro Tyr 450 455 460 ctt tcg gcg gct gat
tac gcg tac acc gcg tct gac gct gcg gag acc 1440Leu Ser Ala Ala Asp
Tyr Ala Tyr Thr Ala Ser Asp Ala Ala Glu Thr 465 470 475 480 aca aat
gta cag gga tgg gtt tgc ctg ttt caa att aca cac ggg aag 1488Thr Asn
Val Gln Gly Trp Val Cys Leu Phe Gln Ile Thr His Gly Lys 485 490 495
gct gac ggc gac gca ctg gtc gtt cta gct agc gcc ggt aag gac ttt
1536Ala Asp Gly Asp Ala Leu Val Val Leu Ala Ser Ala Gly Lys Asp Phe
500 505 510 gag ctg cgt ctg cca gtt gac gct cgc acg cag acc acc tcc
gca ggt 1584Glu Leu Arg Leu Pro Val Asp Ala Arg Thr Gln Thr Thr Ser
Ala Gly 515 520 525 gag tcg gct gac ccc gtg act gcc act gtt gag aac
tac ggt ggt gag 1632Glu Ser Ala Asp Pro Val Thr Ala Thr Val Glu Asn
Tyr Gly Gly Glu 530 535 540 aca cag gtc cag aga cgc caa cac acg gat
gtc tcg ttc ata tta gac 1680Thr Gln Val Gln Arg Arg Gln His Thr Asp
Val Ser Phe Ile Leu Asp 545 550 555 560 aga ttt gtg aaa gta aca cca
aaa gac caa att aat gtg ttg gac ctg 1728Arg Phe Val Lys Val Thr Pro
Lys Asp Gln Ile Asn Val Leu Asp Leu 565 570 575 atg caa acc cct gca
cac act ttg gta ggc gcg ctc ctc cgt act gcc 1776Met Gln Thr Pro Ala
His Thr Leu Val Gly Ala Leu Leu Arg Thr Ala 580 585 590 acc tac tac
ttc gca gat cta gaa gtg gca gtg aaa cac gag ggg aac 1824Thr Tyr Tyr
Phe Ala Asp Leu Glu Val Ala Val Lys His Glu Gly Asn 595 600 605 ctt
acc tgg gtc ccg aat ggg gcg ccc gag aca gcg ttg gac aac acc 1872Leu
Thr Trp Val Pro Asn Gly Ala Pro Glu Thr Ala Leu Asp Asn Thr 610 615
620 acc aat cca acg gct tac cac aag gca ccg ctc acc cgg ctt gca ctg
1920Thr Asn Pro Thr Ala Tyr His Lys Ala Pro Leu Thr Arg Leu Ala Leu
625 630 635 640 cct tac acg gca ccg cac cgt gtc ttg gct act gtt tac
aac ggg aac 1968Pro Tyr Thr Ala Pro His Arg Val Leu Ala Thr Val Tyr
Asn Gly Asn 645 650 655 tgc aag tat ggc gag agc ccc gtg acc aat gtg
aga ggt gac ctg caa 2016Cys Lys Tyr Gly Glu Ser Pro Val Thr Asn Val
Arg Gly Asp Leu Gln 660 665 670 gta ttg gcc caa aag gcg gca aga acg
ctg cct acc tcc ttc aat tac 2064Val Leu Ala Gln Lys Ala Ala Arg Thr
Leu Pro Thr Ser Phe Asn Tyr 675 680 685 ggt gcc atc aaa gcc act cgg
gtg act gaa ctg ctt tac cgc atg aag 2112Gly Ala Ile Lys Ala Thr Arg
Val Thr Glu Leu Leu Tyr Arg Met Lys 690 695 700 agg gcc gaa aca tac
tgc ccc cgg cct ctt ttg gct att cac cca agc 2160Arg Ala Glu Thr Tyr
Cys Pro Arg Pro Leu Leu Ala Ile His Pro Ser 705 710 715 720 gaa gct
aga cac aaa caa aag att gtt gcg cct gtg aaa cag 2202Glu Ala Arg His
Lys Gln Lys Ile Val Ala Pro Val Lys Gln 725 730
10734PRTFoot-and-mouth disease virus - type O 10Gly Ala Gly Gln Ser
Ser Pro Ala Thr Gly Ser Gln Asn Gln Ser Gly 1 5 10 15 Asn Thr Gly
Ser Ile Ile Asn Asn Tyr Tyr Met Gln Gln Tyr Gln Asn 20 25 30 Ser
Met Asp Thr Gln Leu Gly Asp Asn Ala Ile Ser Gly Gly Ser Asn 35 40
45 Glu Gly Ser Thr Asp Thr Thr Ser Thr His Thr Thr Asn Thr Gln Asn
50 55 60 Asn Asp Trp Phe Ser Lys Leu Ala Ser Ser Ala Phe Ser Gly
Leu Phe 65 70 75 80 Gly Ala Leu Leu Ala Asp Lys Lys Thr Glu Glu Thr
Thr Leu Leu Glu 85 90 95 Asp Arg Ile Leu Thr Thr Arg Asn Gly His
Thr Thr Ser Thr Thr Gln 100 105 110 Ser Ser
Val Gly Val Thr Tyr Gly Tyr Ala Thr Ala Glu Asp Phe Val 115 120 125
Ser Gly Pro Asn Thr Ser Gly Leu Glu Thr Arg Val Val Gln Ala Glu 130
135 140 Arg Phe Phe Lys Thr His Leu Phe Asp Trp Val Thr Ser Asp Pro
Phe 145 150 155 160 Gly Arg Cys Tyr Leu Leu Glu Leu Pro Thr Asp His
Lys Gly Val Tyr 165 170 175 Gly Ser Leu Thr Asp Ser Tyr Ala Tyr Met
Arg Asn Gly Trp Asp Val 180 185 190 Glu Val Thr Ala Val Gly Asn Gln
Phe Asn Gly Gly Cys Leu Leu Val 195 200 205 Ala Met Val Pro Glu Leu
Cys Ser Ile Asp Lys Arg Glu Leu Tyr Gln 210 215 220 Leu Thr Leu Phe
Pro His Gln Phe Ile Asn Pro Arg Thr Asn Met Thr 225 230 235 240 Ala
His Ile Thr Val Pro Phe Val Gly Val Asn Arg Tyr Asp Gln Tyr 245 250
255 Lys Val His Lys Pro Trp Thr Leu Val Val Met Val Val Ala Pro Leu
260 265 270 Thr Val Asn Thr Glu Gly Ala Pro Gln Ile Lys Val Tyr Ala
Asn Ile 275 280 285 Ala Pro Thr Asn Val His Val Ala Gly Glu Phe Pro
Ser Lys Glu Gly 290 295 300 Ile Phe Pro Val Ala Cys Ser Asp Gly Tyr
Gly Gly Leu Val Thr Thr 305 310 315 320 Asp Pro Lys Thr Ala Asp Pro
Ala Tyr Gly Lys Val Phe Asn Pro Pro 325 330 335 Arg Asn Met Leu Pro
Gly Arg Phe Thr Asn Phe Leu Asp Val Ala Glu 340 345 350 Ala Cys Pro
Thr Phe Leu His Phe Glu Gly Gly Val Pro Tyr Val Thr 355 360 365 Thr
Lys Thr Asp Ser Asp Arg Val Leu Ala Gln Phe Asp Leu Ser Leu 370 375
380 Ala Ala Lys His Met Ser Asn Thr Phe Leu Ala Gly Leu Ala Gln Tyr
385 390 395 400 Tyr Thr Gln Tyr Ser Gly Thr Ile Asn Leu His Phe Met
Phe Thr Gly 405 410 415 Pro Thr Asp Ala Lys Ala Arg Tyr Met Ile Ala
Tyr Ala Pro Pro Gly 420 425 430 Met Glu Pro Pro Lys Thr Pro Glu Ala
Ala Ala His Cys Ile His Ala 435 440 445 Glu Trp Asp Thr Gly Leu Asn
Ser Lys Phe Thr Phe Ser Ile Pro Tyr 450 455 460 Leu Ser Ala Ala Asp
Tyr Ala Tyr Thr Ala Ser Asp Ala Ala Glu Thr 465 470 475 480 Thr Asn
Val Gln Gly Trp Val Cys Leu Phe Gln Ile Thr His Gly Lys 485 490 495
Ala Asp Gly Asp Ala Leu Val Val Leu Ala Ser Ala Gly Lys Asp Phe 500
505 510 Glu Leu Arg Leu Pro Val Asp Ala Arg Thr Gln Thr Thr Ser Ala
Gly 515 520 525 Glu Ser Ala Asp Pro Val Thr Ala Thr Val Glu Asn Tyr
Gly Gly Glu 530 535 540 Thr Gln Val Gln Arg Arg Gln His Thr Asp Val
Ser Phe Ile Leu Asp 545 550 555 560 Arg Phe Val Lys Val Thr Pro Lys
Asp Gln Ile Asn Val Leu Asp Leu 565 570 575 Met Gln Thr Pro Ala His
Thr Leu Val Gly Ala Leu Leu Arg Thr Ala 580 585 590 Thr Tyr Tyr Phe
Ala Asp Leu Glu Val Ala Val Lys His Glu Gly Asn 595 600 605 Leu Thr
Trp Val Pro Asn Gly Ala Pro Glu Thr Ala Leu Asp Asn Thr 610 615 620
Thr Asn Pro Thr Ala Tyr His Lys Ala Pro Leu Thr Arg Leu Ala Leu 625
630 635 640 Pro Tyr Thr Ala Pro His Arg Val Leu Ala Thr Val Tyr Asn
Gly Asn 645 650 655 Cys Lys Tyr Gly Glu Ser Pro Val Thr Asn Val Arg
Gly Asp Leu Gln 660 665 670 Val Leu Ala Gln Lys Ala Ala Arg Thr Leu
Pro Thr Ser Phe Asn Tyr 675 680 685 Gly Ala Ile Lys Ala Thr Arg Val
Thr Glu Leu Leu Tyr Arg Met Lys 690 695 700 Arg Ala Glu Thr Tyr Cys
Pro Arg Pro Leu Leu Ala Ile His Pro Ser 705 710 715 720 Glu Ala Arg
His Lys Gln Lys Ile Val Ala Pro Val Lys Gln 725 730
112202DNAArtificialdeoptimized FMVD capsid sequence 11ggggcggggc
aatcgagccc ggcgacgggg tcgcagaacc agtcggggaa cacggggagc 60ataataaaca
attactacat gcagcagtac cagaactcga tggacacgca gctaggggac
120aacgcgataa gcggggggtc gaacgagggg tcgacggaca cgacgtcgac
gcacacgacg 180aacacgcaga acaatgactg gttttcgaag ctagcgtcgt
cggcgtttag cgggctattc 240ggggcgctac tagcggacaa gaaaacggag
gagacgacgc tactagagga ccgaatacta 300acgacgcgaa acgggcacac
gacgtcgacg acgcagtcga gcgtaggggt aacgtacggg 360tacgcgacgg
cggaggactt tgtaagcggg ccgaacacgt cggggctaga gacgcgagta
420gtacaggcgg agcgattctt caaaacgcac ctattcgact gggtaacgtc
ggacccgttt 480gggcgatgct atctactaga actaccgacg gaccacaaag
gggtatacgg gagcctaacg 540gactcgtatg cgtacatgcg aaacgggtgg
gatgtagagg taacggcggt agggaatcag 600ttcaacgggg ggtgtctact
agtagcgatg gtaccggaac tatgctcgat agacaagcga 660gagctatacc
agctaacgct atttccgcac cagttcataa acccgcgaac gaacatgacg
720gcgcacataa cggtaccgtt tgtaggggta aaccgatacg accagtacaa
ggtacacaaa 780ccgtggacgc tagtagtaat ggtagtagcg ccgctaacgg
taaacacgga aggggcgccg 840cagataaagg tatatgcgaa catagcgccg
acgaacgtac acgtagcggg ggagttcccg 900tcgaaggaag ggatattccc
ggtagcgtgt agcgacgggt acggggggct agtaacgacg 960gacccgaaga
cggcggaccc ggcgtacggg aaagtattca atccgccgcg aaacatgcta
1020ccggggcgat tcacgaactt cctagatgta gcggaggcgt gcccgacgtt
tctacacttt 1080gagggggggg taccgtacgt aacgacgaag acggactcgg
accgagtact agcgcagttc 1140gacctatcgc tagcggcgaa gcacatgtcg
aacacgttcc tagcggggct agcgcagtac 1200tacacgcagt acagcgggac
gataaaccta cacttcatgt tcacggggcc gacggacgcg 1260aaagcgcgat
acatgatagc gtacgcgccg ccggggatgg agccgccgaa aacgccggag
1320gcggcggcgc actgcataca tgcggagtgg gacacggggc taaattcgaa
attcacgttt 1380tcgataccgt acctatcggc ggcggattac gcgtacacgg
cgtcggacgc ggcggagacg 1440acgaatgtac aggggtgggt atgcctattt
caaataacgc acgggaaggc ggacggggac 1500gcgctagtag tactagcgag
cgcggggaag gactttgagc tacgactacc ggtagacgcg 1560cgaacgcaga
cgacgtcggc gggggagtcg gcggacccgg taacggcgac ggtagagaac
1620tacggggggg agacgcaggt acagcgacga caacacacgg atgtatcgtt
catactagac 1680cgatttgtaa aagtaacgcc gaaagaccaa ataaatgtac
tagacctaat gcaaacgccg 1740gcgcacacgc tagtaggggc gctactacga
acggcgacgt actacttcgc ggatctagaa 1800gtagcggtaa aacacgaggg
gaacctaacg tgggtaccga atggggcgcc ggagacggcg 1860ctagacaaca
cgacgaatcc gacggcgtac cacaaggcgc cgctaacgcg actagcgcta
1920ccgtacacgg cgccgcaccg agtactagcg acggtataca acgggaactg
caagtatggg 1980gagagcccgg taacgaatgt acgaggggac ctacaagtac
tagcgcaaaa ggcggcgcga 2040acgctaccga cgtcgttcaa ttacggggcg
ataaaagcga cgcgagtaac ggaactacta 2100taccgaatga agcgagcgga
aacgtactgc ccgcgaccgc tactagcgat acacccgagc 2160gaagcgcgac
acaaacaaaa gatagtagcg ccggtaaaac ag 2202123768DNASARS coronavirus
UrbaniCDS(1)..(3768) 12atg ttt att ttc tta tta ttt ctt act ctc act
agt ggt agt gac ctt 48Met Phe Ile Phe Leu Leu Phe Leu Thr Leu Thr
Ser Gly Ser Asp Leu 1 5 10 15 gac cgg tgc acc act ttt gat gat gtt
caa gct cct aat tac act caa 96Asp Arg Cys Thr Thr Phe Asp Asp Val
Gln Ala Pro Asn Tyr Thr Gln 20 25 30 cat act tca tct atg agg ggg
gtt tac tat cct gat gaa att ttt aga 144His Thr Ser Ser Met Arg Gly
Val Tyr Tyr Pro Asp Glu Ile Phe Arg 35 40 45 tca gac act ctt tat
tta act cag gat tta ttt ctt cca ttt tat tct 192Ser Asp Thr Leu Tyr
Leu Thr Gln Asp Leu Phe Leu Pro Phe Tyr Ser 50 55 60 aat gtt aca
ggg ttt cat act att aat cat acg ttt ggc aac cct gtc 240Asn Val Thr
Gly Phe His Thr Ile Asn His Thr Phe Gly Asn Pro Val 65 70 75 80 ata
cct ttt aag gat ggt att tat ttt gct gcc aca gag aaa tca aat 288Ile
Pro Phe Lys Asp Gly Ile Tyr Phe Ala Ala Thr Glu Lys Ser Asn 85 90
95 gtt gtc cgt ggt tgg gtt ttt ggt tct acc atg aac aac aag tca cag
336Val Val Arg Gly Trp Val Phe Gly Ser Thr Met Asn Asn Lys Ser Gln
100 105 110 tcg gtg att att att aac aat tct act aat gtt gtt ata cga
gca tgt 384Ser Val Ile Ile Ile Asn Asn Ser Thr Asn Val Val Ile Arg
Ala Cys 115 120 125 aac ttt gaa ttg tgt gac aac cct ttc ttt gct gtt
tct aaa ccc atg 432Asn Phe Glu Leu Cys Asp Asn Pro Phe Phe Ala Val
Ser Lys Pro Met 130 135 140 ggt aca cag aca cat act atg ata ttc gat
aat gca ttt aat tgc act 480Gly Thr Gln Thr His Thr Met Ile Phe Asp
Asn Ala Phe Asn Cys Thr 145 150 155 160 ttc gag tac ata tct gat gcc
ttt tcg ctt gat gtt tca gaa aag tca 528Phe Glu Tyr Ile Ser Asp Ala
Phe Ser Leu Asp Val Ser Glu Lys Ser 165 170 175 ggt aat ttt aaa cac
tta cga gag ttt gtg ttt aaa aat aaa gat ggg 576Gly Asn Phe Lys His
Leu Arg Glu Phe Val Phe Lys Asn Lys Asp Gly 180 185 190 ttt ctc tat
gtt tat aag ggc tat caa cct ata gat gta gtt cgt gat 624Phe Leu Tyr
Val Tyr Lys Gly Tyr Gln Pro Ile Asp Val Val Arg Asp 195 200 205 cta
cct tct ggt ttt aac act ttg aaa cct att ttt aag ttg cct ctt 672Leu
Pro Ser Gly Phe Asn Thr Leu Lys Pro Ile Phe Lys Leu Pro Leu 210 215
220 ggt att aac att aca aat ttt aga gcc att ctt aca gcc ttt tca cct
720Gly Ile Asn Ile Thr Asn Phe Arg Ala Ile Leu Thr Ala Phe Ser Pro
225 230 235 240 gct caa gac att tgg ggc acg tca gct gca gcc tat ttt
gtt ggc tat 768Ala Gln Asp Ile Trp Gly Thr Ser Ala Ala Ala Tyr Phe
Val Gly Tyr 245 250 255 tta aag cca act aca ttt atg ctc aag tat gat
gaa aat ggt aca atc 816Leu Lys Pro Thr Thr Phe Met Leu Lys Tyr Asp
Glu Asn Gly Thr Ile 260 265 270 aca gat gct gtt gat tgt tct caa aat
cca ctt gct gaa ctc aaa tgc 864Thr Asp Ala Val Asp Cys Ser Gln Asn
Pro Leu Ala Glu Leu Lys Cys 275 280 285 tct gtt aag agc ttt gag att
gac aaa gga att tac cag acc tct aat 912Ser Val Lys Ser Phe Glu Ile
Asp Lys Gly Ile Tyr Gln Thr Ser Asn 290 295 300 ttc agg gtt gtt ccc
tca gga gat gtt gtg aga ttc cct aat att aca 960Phe Arg Val Val Pro
Ser Gly Asp Val Val Arg Phe Pro Asn Ile Thr 305 310 315 320 aac ttg
tgt cct ttt gga gag gtt ttt aat gct act aaa ttc cct tct 1008Asn Leu
Cys Pro Phe Gly Glu Val Phe Asn Ala Thr Lys Phe Pro Ser 325 330 335
gtc tat gca tgg gag aga aaa aaa att tct aat tgt gtt gct gat tac
1056Val Tyr Ala Trp Glu Arg Lys Lys Ile Ser Asn Cys Val Ala Asp Tyr
340 345 350 tct gtg ctc tac aac tca aca ttt ttt tca acc ttt aag tgc
tat ggc 1104Ser Val Leu Tyr Asn Ser Thr Phe Phe Ser Thr Phe Lys Cys
Tyr Gly 355 360 365 gtt tct gcc act aag ttg aat gat ctt tgc ttc tcc
aat gtc tat gca 1152Val Ser Ala Thr Lys Leu Asn Asp Leu Cys Phe Ser
Asn Val Tyr Ala 370 375 380 gat tct ttt gta gtc aag gga gat gat gta
aga caa ata gcg cca gga 1200Asp Ser Phe Val Val Lys Gly Asp Asp Val
Arg Gln Ile Ala Pro Gly 385 390 395 400 caa act ggt gtt att gct gat
tat aat tat aaa ttg cca gat gat ttc 1248Gln Thr Gly Val Ile Ala Asp
Tyr Asn Tyr Lys Leu Pro Asp Asp Phe 405 410 415 atg ggt tgt gtc ctt
gct tgg aat act agg aac att gat gct act tca 1296Met Gly Cys Val Leu
Ala Trp Asn Thr Arg Asn Ile Asp Ala Thr Ser 420 425 430 act ggt aat
tat aat tat aaa tat agg tat ctt aga cat ggc aag ctt 1344Thr Gly Asn
Tyr Asn Tyr Lys Tyr Arg Tyr Leu Arg His Gly Lys Leu 435 440 445 agg
ccc ttt gag aga gac ata tct aat gtg cct ttc tcc cct gat ggc 1392Arg
Pro Phe Glu Arg Asp Ile Ser Asn Val Pro Phe Ser Pro Asp Gly 450 455
460 aaa cct tgc acc cca cct gct ctt aat tgt tat tgg cca tta aat gat
1440Lys Pro Cys Thr Pro Pro Ala Leu Asn Cys Tyr Trp Pro Leu Asn Asp
465 470 475 480 tat ggt ttt tac acc act act ggc att ggc tac caa cct
tac aga gtt 1488Tyr Gly Phe Tyr Thr Thr Thr Gly Ile Gly Tyr Gln Pro
Tyr Arg Val 485 490 495 gta gta ctt tct ttt gaa ctt tta aat gca ccg
gcc acg gtt tgt gga 1536Val Val Leu Ser Phe Glu Leu Leu Asn Ala Pro
Ala Thr Val Cys Gly 500 505 510 cca aaa tta tcc act gac ctt att aag
aac cag tgt gtc aat ttt aat 1584Pro Lys Leu Ser Thr Asp Leu Ile Lys
Asn Gln Cys Val Asn Phe Asn 515 520 525 ttt aat gga ctc act ggt act
ggt gtg tta act cct tct tca aag aga 1632Phe Asn Gly Leu Thr Gly Thr
Gly Val Leu Thr Pro Ser Ser Lys Arg 530 535 540 ttt caa cca ttt caa
caa ttt ggc cgt gat gtt tct gat ttc act gat 1680Phe Gln Pro Phe Gln
Gln Phe Gly Arg Asp Val Ser Asp Phe Thr Asp 545 550 555 560 tcc gtt
cga gat cct aaa aca tct gaa ata tta gac att tca cct tgc 1728Ser Val
Arg Asp Pro Lys Thr Ser Glu Ile Leu Asp Ile Ser Pro Cys 565 570 575
tct ttt ggg ggt gta agt gta att aca cct gga aca aat gct tca tct
1776Ser Phe Gly Gly Val Ser Val Ile Thr Pro Gly Thr Asn Ala Ser Ser
580 585 590 gaa gtt gct gtt cta tat caa gat gtt aac tgc act gat gtt
tct aca 1824Glu Val Ala Val Leu Tyr Gln Asp Val Asn Cys Thr Asp Val
Ser Thr 595 600 605 gca att cat gca gat caa ctc aca cca gct tgg cgc
ata tat tct act 1872Ala Ile His Ala Asp Gln Leu Thr Pro Ala Trp Arg
Ile Tyr Ser Thr 610 615 620 gga aac aat gta ttc cag act caa gca ggc
tgt ctt ata gga gct gag 1920Gly Asn Asn Val Phe Gln Thr Gln Ala Gly
Cys Leu Ile Gly Ala Glu 625 630 635 640 cat gtc gac act tct tat gag
tgc gac att cct att gga gct ggc att 1968His Val Asp Thr Ser Tyr Glu
Cys Asp Ile Pro Ile Gly Ala Gly Ile 645 650 655 tgt gct agt tac cat
aca gtt tct tta tta cgt agt act agc caa aaa 2016Cys Ala Ser Tyr His
Thr Val Ser Leu Leu Arg Ser Thr Ser Gln Lys 660 665 670 tct att gtg
gct tat act atg tct tta ggt gct gat agt tca att gct 2064Ser Ile Val
Ala Tyr Thr Met Ser Leu Gly Ala Asp Ser Ser Ile Ala 675 680 685 tac
tct aat aac acc att gct ata cct act aac ttt tca att agc att 2112Tyr
Ser Asn Asn Thr Ile Ala Ile Pro Thr Asn Phe Ser Ile Ser Ile 690 695
700 act aca gaa gta atg cct gtt tct atg gct aaa acc tcc gta gat tgt
2160Thr Thr Glu Val Met Pro Val Ser Met Ala Lys Thr Ser Val Asp Cys
705 710 715 720 aat atg tac atc tgc gga gat tct act gaa tgt gct aat
ttg ctt ctc 2208Asn Met Tyr Ile Cys Gly Asp Ser Thr Glu Cys Ala Asn
Leu Leu Leu 725 730 735 caa tat ggt agc ttt tgc aca caa cta aat cgt
gca ctc tca ggt att 2256Gln Tyr Gly Ser Phe Cys Thr Gln Leu Asn Arg
Ala Leu Ser Gly Ile 740 745 750 gct gct gaa cag gat cgc aac aca cgt
gaa gtg ttc gct caa gtc aaa 2304Ala Ala Glu Gln Asp Arg Asn Thr Arg
Glu Val Phe Ala Gln Val Lys 755 760 765 caa atg tac aaa acc cca act
ttg aaa tat ttt ggt ggt ttt aat ttt
2352Gln Met Tyr Lys Thr Pro Thr Leu Lys Tyr Phe Gly Gly Phe Asn Phe
770 775 780 tca caa ata tta cct gac cct cta aag cca act aag agg tct
ttt att 2400Ser Gln Ile Leu Pro Asp Pro Leu Lys Pro Thr Lys Arg Ser
Phe Ile 785 790 795 800 gag gac ttg ctc ttt aat aag gtg aca ctc gct
gat gct ggc ttc atg 2448Glu Asp Leu Leu Phe Asn Lys Val Thr Leu Ala
Asp Ala Gly Phe Met 805 810 815 aag caa tat ggc gaa tgc cta ggt gat
att aat gct aga gat ctc att 2496Lys Gln Tyr Gly Glu Cys Leu Gly Asp
Ile Asn Ala Arg Asp Leu Ile 820 825 830 tgt gcg cag aag ttc aat gga
ctt aca gtg ttg cca cct ctg ctc act 2544Cys Ala Gln Lys Phe Asn Gly
Leu Thr Val Leu Pro Pro Leu Leu Thr 835 840 845 gat gat atg att gct
gcc tac act gct gct cta gtt agt ggt act gcc 2592Asp Asp Met Ile Ala
Ala Tyr Thr Ala Ala Leu Val Ser Gly Thr Ala 850 855 860 act gct gga
tgg aca ttt ggt gct ggc gct gct ctt caa ata cct ttt 2640Thr Ala Gly
Trp Thr Phe Gly Ala Gly Ala Ala Leu Gln Ile Pro Phe 865 870 875 880
gct atg caa atg gca tat agg ttc aat ggc att gga gtt acc caa aat
2688Ala Met Gln Met Ala Tyr Arg Phe Asn Gly Ile Gly Val Thr Gln Asn
885 890 895 gtt ctc tat gag aac caa aaa caa atc gcc aac caa ttt aac
aag gcg 2736Val Leu Tyr Glu Asn Gln Lys Gln Ile Ala Asn Gln Phe Asn
Lys Ala 900 905 910 att agt caa att caa gaa tca ctt aca aca aca tca
act gca ttg ggc 2784Ile Ser Gln Ile Gln Glu Ser Leu Thr Thr Thr Ser
Thr Ala Leu Gly 915 920 925 aag ctg caa gac gtt gtt aac cag aat gct
caa gca tta aac aca ctt 2832Lys Leu Gln Asp Val Val Asn Gln Asn Ala
Gln Ala Leu Asn Thr Leu 930 935 940 gtt aaa caa ctt agc tct aat ttt
ggt gca att tca agt gtg cta aat 2880Val Lys Gln Leu Ser Ser Asn Phe
Gly Ala Ile Ser Ser Val Leu Asn 945 950 955 960 gat atc ctt tcg cga
ctt gat aaa gtc gag gcg gag gta caa att gac 2928Asp Ile Leu Ser Arg
Leu Asp Lys Val Glu Ala Glu Val Gln Ile Asp 965 970 975 agg tta att
aca ggc aga ctt caa agc ctt caa acc tat gta aca caa 2976Arg Leu Ile
Thr Gly Arg Leu Gln Ser Leu Gln Thr Tyr Val Thr Gln 980 985 990 caa
cta atc agg gct gct gaa atc agg gct tct gct aat ctt gct gct 3024Gln
Leu Ile Arg Ala Ala Glu Ile Arg Ala Ser Ala Asn Leu Ala Ala 995
1000 1005 act aaa atg tct gag tgt gtt ctt gga caa tca aaa aga gtt
gac 3069Thr Lys Met Ser Glu Cys Val Leu Gly Gln Ser Lys Arg Val Asp
1010 1015 1020 ttt tgt gga aag ggc tac cac ctt atg tcc ttc cca caa
gca gcc 3114Phe Cys Gly Lys Gly Tyr His Leu Met Ser Phe Pro Gln Ala
Ala 1025 1030 1035 ccg cat ggt gtt gtc ttc cta cat gtc acg tat gtg
cca tcc cag 3159Pro His Gly Val Val Phe Leu His Val Thr Tyr Val Pro
Ser Gln 1040 1045 1050 gag agg aac ttc acc aca gcg cca gca att tgt
cat gaa ggc aaa 3204Glu Arg Asn Phe Thr Thr Ala Pro Ala Ile Cys His
Glu Gly Lys 1055 1060 1065 gca tac ttc cct cgt gaa ggt gtt ttt gtg
ttt aat ggc act tct 3249Ala Tyr Phe Pro Arg Glu Gly Val Phe Val Phe
Asn Gly Thr Ser 1070 1075 1080 tgg ttt att aca cag agg aac ttc ttt
tct cca caa ata att act 3294Trp Phe Ile Thr Gln Arg Asn Phe Phe Ser
Pro Gln Ile Ile Thr 1085 1090 1095 aca gac aat aca ttt gtc tca gga
aat tgt gat gtc gtt att ggc 3339Thr Asp Asn Thr Phe Val Ser Gly Asn
Cys Asp Val Val Ile Gly 1100 1105 1110 atc att aac aac aca gtt tat
gat cct ctg caa cct gag ctc gac 3384Ile Ile Asn Asn Thr Val Tyr Asp
Pro Leu Gln Pro Glu Leu Asp 1115 1120 1125 tca ttc aaa gaa gag ctg
gac aag tac ttc aaa aat cat aca tca 3429Ser Phe Lys Glu Glu Leu Asp
Lys Tyr Phe Lys Asn His Thr Ser 1130 1135 1140 cca gat gtt gat ctt
ggc gac att tca ggc att aac gct tct gtc 3474Pro Asp Val Asp Leu Gly
Asp Ile Ser Gly Ile Asn Ala Ser Val 1145 1150 1155 gtc aac att caa
aaa gaa att gac cgc ctc aat gag gtc gct aaa 3519Val Asn Ile Gln Lys
Glu Ile Asp Arg Leu Asn Glu Val Ala Lys 1160 1165 1170 aat tta aat
gaa tca ctc att gac ctt caa gaa ttg gga aaa tat 3564Asn Leu Asn Glu
Ser Leu Ile Asp Leu Gln Glu Leu Gly Lys Tyr 1175 1180 1185 gag caa
tat att aaa tgg cct tgg tat gtt tgg ctc ggc ttc att 3609Glu Gln Tyr
Ile Lys Trp Pro Trp Tyr Val Trp Leu Gly Phe Ile 1190 1195 1200 gct
gga cta att gcc atc gtc atg gtt aca atc ttg ctt tgt tgc 3654Ala Gly
Leu Ile Ala Ile Val Met Val Thr Ile Leu Leu Cys Cys 1205 1210 1215
atg act agt tgt tgc agt tgc ctc aag ggt gca tgc tct tgt ggt 3699Met
Thr Ser Cys Cys Ser Cys Leu Lys Gly Ala Cys Ser Cys Gly 1220 1225
1230 tct tgc tgc aag ttt gat gag gat gac tct gag cca gtt ctc aag
3744Ser Cys Cys Lys Phe Asp Glu Asp Asp Ser Glu Pro Val Leu Lys
1235 1240 1245 ggt gtc aaa tta cat tac aca taa 3768Gly Val Lys Leu
His Tyr Thr 1250 1255 131255PRTSARS coronavirus Urbani 13Met Phe
Ile Phe Leu Leu Phe Leu Thr Leu Thr Ser Gly Ser Asp Leu 1 5 10 15
Asp Arg Cys Thr Thr Phe Asp Asp Val Gln Ala Pro Asn Tyr Thr Gln 20
25 30 His Thr Ser Ser Met Arg Gly Val Tyr Tyr Pro Asp Glu Ile Phe
Arg 35 40 45 Ser Asp Thr Leu Tyr Leu Thr Gln Asp Leu Phe Leu Pro
Phe Tyr Ser 50 55 60 Asn Val Thr Gly Phe His Thr Ile Asn His Thr
Phe Gly Asn Pro Val 65 70 75 80 Ile Pro Phe Lys Asp Gly Ile Tyr Phe
Ala Ala Thr Glu Lys Ser Asn 85 90 95 Val Val Arg Gly Trp Val Phe
Gly Ser Thr Met Asn Asn Lys Ser Gln 100 105 110 Ser Val Ile Ile Ile
Asn Asn Ser Thr Asn Val Val Ile Arg Ala Cys 115 120 125 Asn Phe Glu
Leu Cys Asp Asn Pro Phe Phe Ala Val Ser Lys Pro Met 130 135 140 Gly
Thr Gln Thr His Thr Met Ile Phe Asp Asn Ala Phe Asn Cys Thr 145 150
155 160 Phe Glu Tyr Ile Ser Asp Ala Phe Ser Leu Asp Val Ser Glu Lys
Ser 165 170 175 Gly Asn Phe Lys His Leu Arg Glu Phe Val Phe Lys Asn
Lys Asp Gly 180 185 190 Phe Leu Tyr Val Tyr Lys Gly Tyr Gln Pro Ile
Asp Val Val Arg Asp 195 200 205 Leu Pro Ser Gly Phe Asn Thr Leu Lys
Pro Ile Phe Lys Leu Pro Leu 210 215 220 Gly Ile Asn Ile Thr Asn Phe
Arg Ala Ile Leu Thr Ala Phe Ser Pro 225 230 235 240 Ala Gln Asp Ile
Trp Gly Thr Ser Ala Ala Ala Tyr Phe Val Gly Tyr 245 250 255 Leu Lys
Pro Thr Thr Phe Met Leu Lys Tyr Asp Glu Asn Gly Thr Ile 260 265 270
Thr Asp Ala Val Asp Cys Ser Gln Asn Pro Leu Ala Glu Leu Lys Cys 275
280 285 Ser Val Lys Ser Phe Glu Ile Asp Lys Gly Ile Tyr Gln Thr Ser
Asn 290 295 300 Phe Arg Val Val Pro Ser Gly Asp Val Val Arg Phe Pro
Asn Ile Thr 305 310 315 320 Asn Leu Cys Pro Phe Gly Glu Val Phe Asn
Ala Thr Lys Phe Pro Ser 325 330 335 Val Tyr Ala Trp Glu Arg Lys Lys
Ile Ser Asn Cys Val Ala Asp Tyr 340 345 350 Ser Val Leu Tyr Asn Ser
Thr Phe Phe Ser Thr Phe Lys Cys Tyr Gly 355 360 365 Val Ser Ala Thr
Lys Leu Asn Asp Leu Cys Phe Ser Asn Val Tyr Ala 370 375 380 Asp Ser
Phe Val Val Lys Gly Asp Asp Val Arg Gln Ile Ala Pro Gly 385 390 395
400 Gln Thr Gly Val Ile Ala Asp Tyr Asn Tyr Lys Leu Pro Asp Asp Phe
405 410 415 Met Gly Cys Val Leu Ala Trp Asn Thr Arg Asn Ile Asp Ala
Thr Ser 420 425 430 Thr Gly Asn Tyr Asn Tyr Lys Tyr Arg Tyr Leu Arg
His Gly Lys Leu 435 440 445 Arg Pro Phe Glu Arg Asp Ile Ser Asn Val
Pro Phe Ser Pro Asp Gly 450 455 460 Lys Pro Cys Thr Pro Pro Ala Leu
Asn Cys Tyr Trp Pro Leu Asn Asp 465 470 475 480 Tyr Gly Phe Tyr Thr
Thr Thr Gly Ile Gly Tyr Gln Pro Tyr Arg Val 485 490 495 Val Val Leu
Ser Phe Glu Leu Leu Asn Ala Pro Ala Thr Val Cys Gly 500 505 510 Pro
Lys Leu Ser Thr Asp Leu Ile Lys Asn Gln Cys Val Asn Phe Asn 515 520
525 Phe Asn Gly Leu Thr Gly Thr Gly Val Leu Thr Pro Ser Ser Lys Arg
530 535 540 Phe Gln Pro Phe Gln Gln Phe Gly Arg Asp Val Ser Asp Phe
Thr Asp 545 550 555 560 Ser Val Arg Asp Pro Lys Thr Ser Glu Ile Leu
Asp Ile Ser Pro Cys 565 570 575 Ser Phe Gly Gly Val Ser Val Ile Thr
Pro Gly Thr Asn Ala Ser Ser 580 585 590 Glu Val Ala Val Leu Tyr Gln
Asp Val Asn Cys Thr Asp Val Ser Thr 595 600 605 Ala Ile His Ala Asp
Gln Leu Thr Pro Ala Trp Arg Ile Tyr Ser Thr 610 615 620 Gly Asn Asn
Val Phe Gln Thr Gln Ala Gly Cys Leu Ile Gly Ala Glu 625 630 635 640
His Val Asp Thr Ser Tyr Glu Cys Asp Ile Pro Ile Gly Ala Gly Ile 645
650 655 Cys Ala Ser Tyr His Thr Val Ser Leu Leu Arg Ser Thr Ser Gln
Lys 660 665 670 Ser Ile Val Ala Tyr Thr Met Ser Leu Gly Ala Asp Ser
Ser Ile Ala 675 680 685 Tyr Ser Asn Asn Thr Ile Ala Ile Pro Thr Asn
Phe Ser Ile Ser Ile 690 695 700 Thr Thr Glu Val Met Pro Val Ser Met
Ala Lys Thr Ser Val Asp Cys 705 710 715 720 Asn Met Tyr Ile Cys Gly
Asp Ser Thr Glu Cys Ala Asn Leu Leu Leu 725 730 735 Gln Tyr Gly Ser
Phe Cys Thr Gln Leu Asn Arg Ala Leu Ser Gly Ile 740 745 750 Ala Ala
Glu Gln Asp Arg Asn Thr Arg Glu Val Phe Ala Gln Val Lys 755 760 765
Gln Met Tyr Lys Thr Pro Thr Leu Lys Tyr Phe Gly Gly Phe Asn Phe 770
775 780 Ser Gln Ile Leu Pro Asp Pro Leu Lys Pro Thr Lys Arg Ser Phe
Ile 785 790 795 800 Glu Asp Leu Leu Phe Asn Lys Val Thr Leu Ala Asp
Ala Gly Phe Met 805 810 815 Lys Gln Tyr Gly Glu Cys Leu Gly Asp Ile
Asn Ala Arg Asp Leu Ile 820 825 830 Cys Ala Gln Lys Phe Asn Gly Leu
Thr Val Leu Pro Pro Leu Leu Thr 835 840 845 Asp Asp Met Ile Ala Ala
Tyr Thr Ala Ala Leu Val Ser Gly Thr Ala 850 855 860 Thr Ala Gly Trp
Thr Phe Gly Ala Gly Ala Ala Leu Gln Ile Pro Phe 865 870 875 880 Ala
Met Gln Met Ala Tyr Arg Phe Asn Gly Ile Gly Val Thr Gln Asn 885 890
895 Val Leu Tyr Glu Asn Gln Lys Gln Ile Ala Asn Gln Phe Asn Lys Ala
900 905 910 Ile Ser Gln Ile Gln Glu Ser Leu Thr Thr Thr Ser Thr Ala
Leu Gly 915 920 925 Lys Leu Gln Asp Val Val Asn Gln Asn Ala Gln Ala
Leu Asn Thr Leu 930 935 940 Val Lys Gln Leu Ser Ser Asn Phe Gly Ala
Ile Ser Ser Val Leu Asn 945 950 955 960 Asp Ile Leu Ser Arg Leu Asp
Lys Val Glu Ala Glu Val Gln Ile Asp 965 970 975 Arg Leu Ile Thr Gly
Arg Leu Gln Ser Leu Gln Thr Tyr Val Thr Gln 980 985 990 Gln Leu Ile
Arg Ala Ala Glu Ile Arg Ala Ser Ala Asn Leu Ala Ala 995 1000 1005
Thr Lys Met Ser Glu Cys Val Leu Gly Gln Ser Lys Arg Val Asp 1010
1015 1020 Phe Cys Gly Lys Gly Tyr His Leu Met Ser Phe Pro Gln Ala
Ala 1025 1030 1035 Pro His Gly Val Val Phe Leu His Val Thr Tyr Val
Pro Ser Gln 1040 1045 1050 Glu Arg Asn Phe Thr Thr Ala Pro Ala Ile
Cys His Glu Gly Lys 1055 1060 1065 Ala Tyr Phe Pro Arg Glu Gly Val
Phe Val Phe Asn Gly Thr Ser 1070 1075 1080 Trp Phe Ile Thr Gln Arg
Asn Phe Phe Ser Pro Gln Ile Ile Thr 1085 1090 1095 Thr Asp Asn Thr
Phe Val Ser Gly Asn Cys Asp Val Val Ile Gly 1100 1105 1110 Ile Ile
Asn Asn Thr Val Tyr Asp Pro Leu Gln Pro Glu Leu Asp 1115 1120 1125
Ser Phe Lys Glu Glu Leu Asp Lys Tyr Phe Lys Asn His Thr Ser 1130
1135 1140 Pro Asp Val Asp Leu Gly Asp Ile Ser Gly Ile Asn Ala Ser
Val 1145 1150 1155 Val Asn Ile Gln Lys Glu Ile Asp Arg Leu Asn Glu
Val Ala Lys 1160 1165 1170 Asn Leu Asn Glu Ser Leu Ile Asp Leu Gln
Glu Leu Gly Lys Tyr 1175 1180 1185 Glu Gln Tyr Ile Lys Trp Pro Trp
Tyr Val Trp Leu Gly Phe Ile 1190 1195 1200 Ala Gly Leu Ile Ala Ile
Val Met Val Thr Ile Leu Leu Cys Cys 1205 1210 1215 Met Thr Ser Cys
Cys Ser Cys Leu Lys Gly Ala Cys Ser Cys Gly 1220 1225 1230 Ser Cys
Cys Lys Phe Asp Glu Asp Asp Ser Glu Pro Val Leu Lys 1235 1240 1245
Gly Val Lys Leu His Tyr Thr 1250 1255
143768DNAArtificialdeoptimized SARS spike glycoprotein nucleic acid
sequence 14atgtttatct tcctgctgtt tctgacgctg acgtcggggt cggacctgga
ccggtgcacg 60acgtttgatg atgtccaagc gccgaattac acgcaacata cgtcgtcgat
gcggggggtc 120tactatccgg atgaaatctt tcggtcggac acgctgtatc
tgacgcagga tctgtttctg 180ccgttttatt cgaatgtcac ggggtttcat
acgatcaatc atacgtttgg gaacccggtc 240atcccgttta aggatgggat
ctattttgcg gcgacggaga aatcgaatgt cgtccggggg 300tgggtctttg
ggtcgacgat gaacaacaag tcgcagtcgg tcatcatcat caacaattcg
360acgaatgtcg tcatccgggc gtgtaacttt gaactgtgtg acaacccgtt
ctttgcggtc 420tcgaaaccga tggggacgca gacgcatacg atgatcttcg
ataatgcgtt taattgcacg 480ttcgagtaca tctcggatgc gttttcgctg
gatgtctcgg aaaagtcggg gaattttaaa 540cacctgcggg agtttgtctt
taaaaataaa gatgggtttc tgtatgtcta taaggggtat 600caaccgatcg
atgtcgtccg ggatctgccg tcggggttta acacgctgaa accgatcttt
660aagctgccgc tggggatcaa catcacgaat tttcgggcga tcctgacggc
gttttcgccg 720gcgcaagaca tctgggggac gtcggcggcg gcgtattttg
tcgggtatct gaagccgacg 780acgtttatgc tgaagtatga tgaaaatggg
acgatcacgg atgcggtcga ttgttcgcaa 840aatccgctgg cggaactgaa
atgctcggtc aagtcgtttg agatcgacaa agggatctac 900cagacgtcga
atttccgggt cgtcccgtcg ggggatgtcg tccggttccc
gaatatcacg 960aacctgtgtc cgtttgggga ggtctttaat gcgacgaaat
tcccgtcggt ctatgcgtgg 1020gagcggaaaa aaatctcgaa ttgtgtcgcg
gattactcgg tcctgtacaa ctcgacgttt 1080ttttcgacgt ttaagtgcta
tggggtctcg gcgacgaagc tgaatgatct gtgcttctcg 1140aatgtctatg
cggattcgtt tgtcgtcaag ggggatgatg tccggcaaat cgcgccgggg
1200caaacggggg tcatcgcgga ttataattat aaactgccgg atgatttcat
ggggtgtgtc 1260ctggcgtgga atacgcggaa catcgatgcg acgtcgacgg
ggaattataa ttataaatat 1320cggtatctgc ggcatgggaa gctgcggccg
tttgagcggg acatctcgaa tgtcccgttc 1380tcgccggatg ggaaaccgtg
cacgccgccg gcgctgaatt gttattggcc gctgaatgat 1440tatgggtttt
acacgacgac ggggatcggg taccaaccgt accgggtcgt cgtcctgtcg
1500tttgaactgc tgaatgcgcc ggcgacggtc tgtgggccga aactgtcgac
ggacctgatc 1560aagaaccagt gtgtcaattt taattttaat gggctgacgg
ggacgggggt cctgacgccg 1620tcgtcgaagc ggtttcaacc gtttcaacaa
tttgggcggg atgtctcgga tttcacggat 1680tcggtccggg atccgaaaac
gtcggaaatc ctggacatct cgccgtgctc gtttgggggg 1740gtctcggtca
tcacgccggg gacgaatgcg tcgtcggaag tcgcggtcct gtatcaagat
1800gtcaactgca cggatgtctc gacggcgatc catgcggatc aactgacgcc
ggcgtggcgg 1860atctattcga cggggaacaa tgtcttccag acgcaagcgg
ggtgtctgat cggggcggag 1920catgtcgaca cgtcgtatga gtgcgacatc
ccgatcgggg cggggatctg tgcgtcgtac 1980catacggtct cgctgctgcg
gtcgacgtcg caaaaatcga tcgtcgcgta tacgatgtcg 2040ctgggggcgg
attcgtcgat cgcgtactcg aataacacga tcgcgatccc gacgaacttt
2100tcgatctcga tcacgacgga agtcatgccg gtctcgatgg cgaaaacgtc
ggtcgattgt 2160aatatgtaca tctgcgggga ttcgacggaa tgtgcgaatc
tgctgctgca atatgggtcg 2220ttttgcacgc aactgaatcg ggcgctgtcg
gggatcgcgg cggaacagga tcggaacacg 2280cgggaagtct tcgcgcaagt
caaacaaatg tacaaaacgc cgacgctgaa atattttggg 2340gggtttaatt
tttcgcaaat cctgccggac ccgctgaagc cgacgaagcg gtcgtttatc
2400gaggacctgc tgtttaataa ggtcacgctg gcggatgcgg ggttcatgaa
gcaatatggg 2460gaatgcctgg gggatatcaa tgcgcgggat ctgatctgtg
cgcagaagtt caatgggctg 2520acggtcctgc cgccgctgct gacggatgat
atgatcgcgg cgtacacggc ggcgctggtc 2580tcggggacgg cgacggcggg
gtggacgttt ggggcggggg cggcgctgca aatcccgttt 2640gcgatgcaaa
tggcgtatcg gttcaatggg atcggggtca cgcaaaatgt cctgtatgag
2700aaccaaaaac aaatcgcgaa ccaatttaac aaggcgatct cgcaaatcca
agaatcgctg 2760acgacgacgt cgacggcgct ggggaagctg caagacgtcg
tcaaccagaa tgcgcaagcg 2820ctgaacacgc tggtcaaaca actgtcgtcg
aattttgggg cgatctcgtc ggtcctgaat 2880gatatcctgt cgcggctgga
taaagtcgag gcggaggtcc aaatcgaccg gctgatcacg 2940gggcggctgc
aatcgctgca aacgtatgtc acgcaacaac tgatccgggc ggcggaaatc
3000cgggcgtcgg cgaatctggc ggcgacgaaa atgtcggagt gtgtcctggg
gcaatcgaaa 3060cgggtcgact tttgtgggaa ggggtaccac ctgatgtcgt
tcccgcaagc ggcgccgcat 3120ggggtcgtct tcctgcatgt cacgtatgtc
ccgtcgcagg agcggaactt cacgacggcg 3180ccggcgatct gtcatgaagg
gaaagcgtac ttcccgcggg aaggggtctt tgtctttaat 3240gggacgtcgt
ggtttatcac gcagcggaac ttcttttcgc cgcaaatcat cacgacggac
3300aatacgtttg tctcggggaa ttgtgatgtc gtcatcggga tcatcaacaa
cacggtctat 3360gatccgctgc aaccggagct ggactcgttc aaagaagagc
tggacaagta cttcaaaaat 3420catacgtcgc cggatgtcga tctgggggac
atctcgggga tcaacgcgtc ggtcgtcaac 3480atccaaaaag aaatcgaccg
gctgaatgag gtcgcgaaaa atctgaatga atcgctgatc 3540gacctgcaag
aactggggaa atatgagcaa tatatcaaat ggccgtggta tgtctggctg
3600gggttcatcg cggggctgat cgcgatcgtc atggtcacga tcctgctgtg
ttgcatgacg 3660tcgtgttgct cgtgcctgaa gggggcgtgc tcgtgtgggt
cgtgctgcaa gtttgatgag 3720gatgactcgg agccggtcct gaagggggtc
aaactgcatt acacgtaa 3768159762DNARubella
virusCDS(41)..(6391)CDS(6512)..(9703) 15caatgggagc tatcggacct
cgcttaggac tcctattccc atg gag aga ctc cta 55 Met Glu Arg Leu Leu 1
5 gat gag gtt ctt gcc ccc ggt ggg cct tat aac tta acc gtc ggc agt
103Asp Glu Val Leu Ala Pro Gly Gly Pro Tyr Asn Leu Thr Val Gly Ser
10 15 20 tgg gta aga gac cac gtc cgc tca att gtc gag ggc gcg tgg
gaa gtg 151Trp Val Arg Asp His Val Arg Ser Ile Val Glu Gly Ala Trp
Glu Val 25 30 35 cgc gat gtt gtt tcc gct gcc caa aag cgg gcc atc
gta gcc gtg ata 199Arg Asp Val Val Ser Ala Ala Gln Lys Arg Ala Ile
Val Ala Val Ile 40 45 50 ccc aga cct gtg ttc acg cag atg cag gtc
agt gat cac cca gca ctc 247Pro Arg Pro Val Phe Thr Gln Met Gln Val
Ser Asp His Pro Ala Leu 55 60 65 cac gca att tcg cgg tat acc cgc
cgc cat tgg atc gag tgg ggc cct 295His Ala Ile Ser Arg Tyr Thr Arg
Arg His Trp Ile Glu Trp Gly Pro 70 75 80 85 aaa gaa gcc cta cac gtc
ctc atc gac cca agc ccg ggc ctg ctc cgc 343Lys Glu Ala Leu His Val
Leu Ile Asp Pro Ser Pro Gly Leu Leu Arg 90 95 100 gag gtc gct cgc
gtt gag cgc cgc tgg gtc gca ctg tgc ctc cac agg 391Glu Val Ala Arg
Val Glu Arg Arg Trp Val Ala Leu Cys Leu His Arg 105 110 115 acg gca
cgc aaa ctc gcc acc gcc ctg gcc gag acg gcc agc gag gcg 439Thr Ala
Arg Lys Leu Ala Thr Ala Leu Ala Glu Thr Ala Ser Glu Ala 120 125 130
tgg cac gct gac tac gtg tgc gcg ctg cgt ggc gca ccg agc ggc ccc
487Trp His Ala Asp Tyr Val Cys Ala Leu Arg Gly Ala Pro Ser Gly Pro
135 140 145 ttc tac gtc cac cct gag gac gtc ccg cac ggc ggt cgc gcc
gtg gcg 535Phe Tyr Val His Pro Glu Asp Val Pro His Gly Gly Arg Ala
Val Ala 150 155 160 165 gac aga tgc ttg ctc tac tac aca ccc atg cag
atg tgc gag ctg atg 583Asp Arg Cys Leu Leu Tyr Tyr Thr Pro Met Gln
Met Cys Glu Leu Met 170 175 180 cgt acc att gac gcc acc ctg ctc gtg
gcg gtc gac ttg tgg ccg gtc 631Arg Thr Ile Asp Ala Thr Leu Leu Val
Ala Val Asp Leu Trp Pro Val 185 190 195 gcc ctt gcg gcc cac gtc ggc
gac gac tgg gac gac ctg ggc att gcc 679Ala Leu Ala Ala His Val Gly
Asp Asp Trp Asp Asp Leu Gly Ile Ala 200 205 210 tgg cat ctc gac cat
gac ggc ggt tgc ccc gcc gat tgc cgc gga gcc 727Trp His Leu Asp His
Asp Gly Gly Cys Pro Ala Asp Cys Arg Gly Ala 215 220 225 ggc gct ggg
ccc acg ccc ggc tac acc cgc ccc tgc acc aca cgc atc 775Gly Ala Gly
Pro Thr Pro Gly Tyr Thr Arg Pro Cys Thr Thr Arg Ile 230 235 240 245
tac caa gtc ctg ccg gac acc gcc cac ccc ggg cgc ctc tac cgg tgc
823Tyr Gln Val Leu Pro Asp Thr Ala His Pro Gly Arg Leu Tyr Arg Cys
250 255 260 ggg ccc cgc ctg tgg acg cgc gat tgc gcc gtg gcc gaa ctc
tca tgg 871Gly Pro Arg Leu Trp Thr Arg Asp Cys Ala Val Ala Glu Leu
Ser Trp 265 270 275 gag gtt gcc caa cac tgc ggg cac cag gcg cgc gtg
cgc gcc gtg cgg 919Glu Val Ala Gln His Cys Gly His Gln Ala Arg Val
Arg Ala Val Arg 280 285 290 tgc acc ctc cct atc cgc cac gtg cgc agc
ctc caa ccc agc gcg cgg 967Cys Thr Leu Pro Ile Arg His Val Arg Ser
Leu Gln Pro Ser Ala Arg 295 300 305 gtc cga ctc ccg gac ctc gtc cat
ctc gcc gag gtg ggc cgg tgg cgg 1015Val Arg Leu Pro Asp Leu Val His
Leu Ala Glu Val Gly Arg Trp Arg 310 315 320 325 tgg ttc agc ctc ccc
cgc ccc gtg ttc cag cgc atg ctg tcc tac tgc 1063Trp Phe Ser Leu Pro
Arg Pro Val Phe Gln Arg Met Leu Ser Tyr Cys 330 335 340 aag acc ctg
agc ccc gac gcg tac tac agc gag cgc gtg ttc aag ttc 1111Lys Thr Leu
Ser Pro Asp Ala Tyr Tyr Ser Glu Arg Val Phe Lys Phe 345 350 355 aag
aac gcc ctg agc cac agc atc acg ctc gcg ggc aat gtg ctg caa 1159Lys
Asn Ala Leu Ser His Ser Ile Thr Leu Ala Gly Asn Val Leu Gln 360 365
370 gag ggg tgg aag ggc acg tgc gcc gag gaa gac gcg ctg tgc gca tac
1207Glu Gly Trp Lys Gly Thr Cys Ala Glu Glu Asp Ala Leu Cys Ala Tyr
375 380 385 gta gcc ttc cgc gcg tgg cag tct aac gcc agg ttg gcg ggg
att atg 1255Val Ala Phe Arg Ala Trp Gln Ser Asn Ala Arg Leu Ala Gly
Ile Met 390 395 400 405 aaa agc gcg aag cgc tgc gcc gcc gac tct ttg
agc gtg gcc ggc tgg 1303Lys Ser Ala Lys Arg Cys Ala Ala Asp Ser Leu
Ser Val Ala Gly Trp 410 415 420 ctg gac acc att tgg ggc gcc att aag
cgg ttc ttc ggc agc gtg ccc 1351Leu Asp Thr Ile Trp Gly Ala Ile Lys
Arg Phe Phe Gly Ser Val Pro 425 430 435 ctc gcc gag cgc atg gag gag
tgg gaa cag gac gcc gcg gtc gcc gcc 1399Leu Ala Glu Arg Met Glu Glu
Trp Glu Gln Asp Ala Ala Val Ala Ala 440 445 450 ttc gac cgc ggc ccc
ctc gag gac ggc ggg cgc cac ttg gac acc gtg 1447Phe Asp Arg Gly Pro
Leu Glu Asp Gly Gly Arg His Leu Asp Thr Val 455 460 465 caa ccc cca
aaa tcg ccg ccc cgc cct gag atc gcc gcg acc tgg atc 1495Gln Pro Pro
Lys Ser Pro Pro Arg Pro Glu Ile Ala Ala Thr Trp Ile 470 475 480 485
gtc cac gca gcc agc gca gac cgc cat tgt gcg tgc gct ccc cgc tgc
1543Val His Ala Ala Ser Ala Asp Arg His Cys Ala Cys Ala Pro Arg Cys
490 495 500 gac gtc ccg cgc gaa cgt cct tcc gcg ccc gcc ggc ccg ccg
gat gac 1591Asp Val Pro Arg Glu Arg Pro Ser Ala Pro Ala Gly Pro Pro
Asp Asp 505 510 515 gag gcg ctc atc ccg ccg tgg ctg ttc gcc gag cac
cgt gcc ctc cgc 1639Glu Ala Leu Ile Pro Pro Trp Leu Phe Ala Glu His
Arg Ala Leu Arg 520 525 530 tgc cgc gag tgg gat ttc gag gtt ctc cgc
gcg cgc gcc gat acg gcg 1687Cys Arg Glu Trp Asp Phe Glu Val Leu Arg
Ala Arg Ala Asp Thr Ala 535 540 545 gcc gcg ccc gcc ccg ctg gct cca
cgc cct gcg cgg tac ccc acc gtg 1735Ala Ala Pro Ala Pro Leu Ala Pro
Arg Pro Ala Arg Tyr Pro Thr Val 550 555 560 565 ctc tac cgc cac ccc
gcc cac cac ggt ccg tgg ctc acc ctt gac gag 1783Leu Tyr Arg His Pro
Ala His His Gly Pro Trp Leu Thr Leu Asp Glu 570 575 580 ccg ggc gag
gct gac gcg gcc ctg gtc cta tgc gac cca ctt ggc cag 1831Pro Gly Glu
Ala Asp Ala Ala Leu Val Leu Cys Asp Pro Leu Gly Gln 585 590 595 ccg
ctc cgg ggc cct gaa cgc cac ttc gcc gcc ggc gcg cat atg tgc 1879Pro
Leu Arg Gly Pro Glu Arg His Phe Ala Ala Gly Ala His Met Cys 600 605
610 gcg cag gcg cgg ggg ctc cag gct ttt gtc cgt gtc gtg cct cca ccc
1927Ala Gln Ala Arg Gly Leu Gln Ala Phe Val Arg Val Val Pro Pro Pro
615 620 625 gag cgc ccc tgg gcc gac ggg ggc gcc aga gcg tgg gcg aag
ttc ttc 1975Glu Arg Pro Trp Ala Asp Gly Gly Ala Arg Ala Trp Ala Lys
Phe Phe 630 635 640 645 cgc ggc tgc gcc tgg gcg cag cgc ttg ctc ggc
gag cca gca gtt atg 2023Arg Gly Cys Ala Trp Ala Gln Arg Leu Leu Gly
Glu Pro Ala Val Met 650 655 660 cac ctc cca tac acc gat ggc gac gtg
cca cag ctg atc gca ctg gct 2071His Leu Pro Tyr Thr Asp Gly Asp Val
Pro Gln Leu Ile Ala Leu Ala 665 670 675 ttg cgc acg ctg gcc caa cag
ggg gcc gcc ttg gca ctc tcg gtg cgt 2119Leu Arg Thr Leu Ala Gln Gln
Gly Ala Ala Leu Ala Leu Ser Val Arg 680 685 690 gac ctg ccc ggg ggt
gca gcg ttc gac gca aac gcg gtc acc gcc gcc 2167Asp Leu Pro Gly Gly
Ala Ala Phe Asp Ala Asn Ala Val Thr Ala Ala 695 700 705 gtg cgc gct
ggc ccc ggc cag tcc gcg gcc acg tca tcg cca ccc ggc 2215Val Arg Ala
Gly Pro Gly Gln Ser Ala Ala Thr Ser Ser Pro Pro Gly 710 715 720 725
gac ccc ccg ccg ccg cgc tgc gca cgg cga tcg caa cgg cac tcg gac
2263Asp Pro Pro Pro Pro Arg Cys Ala Arg Arg Ser Gln Arg His Ser Asp
730 735 740 gcc cgc ggc act ccg ccc ccc gcg cct gcg cgc gac ccg ccg
ccg ccc 2311Ala Arg Gly Thr Pro Pro Pro Ala Pro Ala Arg Asp Pro Pro
Pro Pro 745 750 755 gcc ccc agc ccg ccc gcg cca ccc cgc gcg ggt gac
ccg gtc cct ccc 2359Ala Pro Ser Pro Pro Ala Pro Pro Arg Ala Gly Asp
Pro Val Pro Pro 760 765 770 act tcc gcg ggg ccg gcg gat cgc gcg cgt
gac gcc gag ctg gag gtc 2407Thr Ser Ala Gly Pro Ala Asp Arg Ala Arg
Asp Ala Glu Leu Glu Val 775 780 785 gcc tac gaa ccg agc ggc ccc ccc
acg tca acc aag gca gac cca gac 2455Ala Tyr Glu Pro Ser Gly Pro Pro
Thr Ser Thr Lys Ala Asp Pro Asp 790 795 800 805 agc gac atc gtt gaa
agt tac gcc cgc gcc gcc gga ccc gtg cac ctc 2503Ser Asp Ile Val Glu
Ser Tyr Ala Arg Ala Ala Gly Pro Val His Leu 810 815 820 cga gtc cgc
gac atc atg gac cca ccg ccc ggc tgc aag gtc gtg gtc 2551Arg Val Arg
Asp Ile Met Asp Pro Pro Pro Gly Cys Lys Val Val Val 825 830 835 aac
gcc gcc aac gag ggg ctg ctg gcc ggc tct ggc gtg tgc ggt gcc 2599Asn
Ala Ala Asn Glu Gly Leu Leu Ala Gly Ser Gly Val Cys Gly Ala 840 845
850 atc ttt gcc aac gcc acg gcg gcc ctc gct gca gac tgc cgg cgc ctc
2647Ile Phe Ala Asn Ala Thr Ala Ala Leu Ala Ala Asp Cys Arg Arg Leu
855 860 865 gcc cca tgc ccc acc ggc gag gca gtg gcg aca ccc ggc cac
ggc tgc 2695Ala Pro Cys Pro Thr Gly Glu Ala Val Ala Thr Pro Gly His
Gly Cys 870 875 880 885 ggg tac acc cac atc atc cac gcc gtc gcg ccg
cgg cgt cct cgg gac 2743Gly Tyr Thr His Ile Ile His Ala Val Ala Pro
Arg Arg Pro Arg Asp 890 895 900 ccc gcc gcc ctc gag gag ggc gaa gcg
ctg ctc gag cgc gcc tac cgc 2791Pro Ala Ala Leu Glu Glu Gly Glu Ala
Leu Leu Glu Arg Ala Tyr Arg 905 910 915 agc atc gtc gcg cta gcc gcc
gcg cgt cgg tgg gcg cgt gtc gcg tgc 2839Ser Ile Val Ala Leu Ala Ala
Ala Arg Arg Trp Ala Arg Val Ala Cys 920 925 930 ccc ctc ctc ggc gct
ggc gtc tac ggc tgg tct gct gcg gag tcc ctc 2887Pro Leu Leu Gly Ala
Gly Val Tyr Gly Trp Ser Ala Ala Glu Ser Leu 935 940 945 cga gcc gcg
ctc gcg gct acg cgc acc gag ccc gcc gag cgc gtg agc 2935Arg Ala Ala
Leu Ala Ala Thr Arg Thr Glu Pro Ala Glu Arg Val Ser 950 955 960 965
ctg cac atc tgc cat ccc gac cgc gcc acg ctg acg cac gcc tcc gtg
2983Leu His Ile Cys His Pro Asp Arg Ala Thr Leu Thr His Ala Ser Val
970 975 980 ctc gtc ggc gcg ggg ctc gct gcc agg cgc gtc agt cct cct
ccg acc 3031Leu Val Gly Ala Gly Leu Ala Ala Arg Arg Val Ser Pro Pro
Pro Thr 985 990 995 gag ccc ctc gca tct tgc ccc gcc ggt gac ccg ggc
cga ccg gct 3076Glu Pro Leu Ala Ser Cys Pro Ala Gly Asp Pro Gly Arg
Pro Ala 1000 1005 1010 cag cgc agc gcg tcg ccc cca gcg acc ccc ctt
ggg gat gcc acc 3121Gln Arg Ser Ala Ser Pro Pro Ala Thr Pro Leu Gly
Asp Ala Thr 1015 1020 1025 gcg ccc gag ccc cgc gga tgc cag ggg tgc
gaa ctc tgc cgg tac 3166Ala Pro Glu Pro Arg Gly Cys Gln Gly Cys Glu
Leu Cys Arg Tyr 1030 1035 1040 acg cgc gtc acc aat gac cgc gcc tat
gtc aac ctg tgg ctc gag 3211Thr Arg Val Thr Asn Asp Arg Ala Tyr Val
Asn Leu Trp Leu Glu 1045 1050 1055 cgc gac cgc ggc gcc acc agc tgg
gcc atg cgc att ccc gag gtg 3256Arg Asp Arg Gly Ala Thr Ser Trp Ala
Met Arg Ile Pro Glu Val
1060 1065 1070 gtt gtc tac ggg ccg gag cac ctc gcc acg cat ttt cca
tta aac 3301Val Val Tyr Gly Pro Glu His Leu Ala Thr His Phe Pro Leu
Asn 1075 1080 1085 cac tac agt gtg ctc aag ccc gcg gag gtc agg ccc
ccg cga ggc 3346His Tyr Ser Val Leu Lys Pro Ala Glu Val Arg Pro Pro
Arg Gly 1090 1095 1100 atg tgc ggg agt gac atg tgg cgc tgc cgc ggc
tgg cag ggc gtg 3391Met Cys Gly Ser Asp Met Trp Arg Cys Arg Gly Trp
Gln Gly Val 1105 1110 1115 ccg cag gtg cgg tgc acc ccc tcc aac gct
cac gcc gcc ctg tgc 3436Pro Gln Val Arg Cys Thr Pro Ser Asn Ala His
Ala Ala Leu Cys 1120 1125 1130 cgc aca ggc gtg ccc cct cgg gtg agc
acg cga ggc ggc gag cta 3481Arg Thr Gly Val Pro Pro Arg Val Ser Thr
Arg Gly Gly Glu Leu 1135 1140 1145 gac cca aac acc tgc tgg ctc cgc
gcc gcc gcc aac gtt gcg cag 3526Asp Pro Asn Thr Cys Trp Leu Arg Ala
Ala Ala Asn Val Ala Gln 1150 1155 1160 gct gcg cgc gcc tgc ggc gcc
tac acg agt gcc ggg tgc ccc agg 3571Ala Ala Arg Ala Cys Gly Ala Tyr
Thr Ser Ala Gly Cys Pro Arg 1165 1170 1175 tgc gcc tac ggc cgc gcc
ctg agc gaa gcc cgc act cat aag gac 3616Cys Ala Tyr Gly Arg Ala Leu
Ser Glu Ala Arg Thr His Lys Asp 1180 1185 1190 ttc gcc gcg ctg agc
cag cgg tgg agc gcg agc cac gcc gat gcc 3661Phe Ala Ala Leu Ser Gln
Arg Trp Ser Ala Ser His Ala Asp Ala 1195 1200 1205 tcc tct gac ggc
acc gga gat ccc ctc gac ccc ctg atg gag acc 3706Ser Ser Asp Gly Thr
Gly Asp Pro Leu Asp Pro Leu Met Glu Thr 1210 1215 1220 gtg gga tgc
gcc tgt tcg cgc gtg tgg gtc ggc tcc gag cac gag 3751Val Gly Cys Ala
Cys Ser Arg Val Trp Val Gly Ser Glu His Glu 1225 1230 1235 gcc ccg
ccc gac cac ctc ctg gtg tcc ctc cac cgt gcc cca aat 3796Ala Pro Pro
Asp His Leu Leu Val Ser Leu His Arg Ala Pro Asn 1240 1245 1250 ggt
ccg tgg ggc gta gtg ctc gag gtg cgt gcg cgc ccc gag ggg 3841Gly Pro
Trp Gly Val Val Leu Glu Val Arg Ala Arg Pro Glu Gly 1255 1260 1265
ggc aac ccc acc ggc cac ttc gtc tgc gcg gtc ggc ggc ggc cca 3886Gly
Asn Pro Thr Gly His Phe Val Cys Ala Val Gly Gly Gly Pro 1270 1275
1280 cgc cgc gtc tcg gac cgc ccc cac ctt tgg ctc gcg gtc ccc ctg
3931Arg Arg Val Ser Asp Arg Pro His Leu Trp Leu Ala Val Pro Leu
1285 1290 1295 tct cgg ggc ggt ggc acc tgt gcc gcg acc gac gag ggg
ctg gcc 3976Ser Arg Gly Gly Gly Thr Cys Ala Ala Thr Asp Glu Gly Leu
Ala 1300 1305 1310 cag gcg tac tac gac gac ctc gag gtg cgc cgc ctc
ggg gat gac 4021Gln Ala Tyr Tyr Asp Asp Leu Glu Val Arg Arg Leu Gly
Asp Asp 1315 1320 1325 gcc atg gcc cgg gcg gcc ctc gca tca gtc caa
cgc cct cgc aaa 4066Ala Met Ala Arg Ala Ala Leu Ala Ser Val Gln Arg
Pro Arg Lys 1330 1335 1340 ggc cct tac aat atc agg gta tgg aac atg
gcc gca ggc gct ggc 4111Gly Pro Tyr Asn Ile Arg Val Trp Asn Met Ala
Ala Gly Ala Gly 1345 1350 1355 aag acc acc cgc atc ctc gct gcc ttc
acg cgc gaa gac ctt tac 4156Lys Thr Thr Arg Ile Leu Ala Ala Phe Thr
Arg Glu Asp Leu Tyr 1360 1365 1370 gtc tgc ccc acc aat gcg ctc ctg
cac gag atc cag gcc aaa ctc 4201Val Cys Pro Thr Asn Ala Leu Leu His
Glu Ile Gln Ala Lys Leu 1375 1380 1385 cgc gcg cgc gat atc gag atc
aag aac gcc gcc acc tac gag cgc 4246Arg Ala Arg Asp Ile Glu Ile Lys
Asn Ala Ala Thr Tyr Glu Arg 1390 1395 1400 gcg ctg acg aaa ccg ctc
gcc gcc tac cgc cgc atc tac atc gat 4291Ala Leu Thr Lys Pro Leu Ala
Ala Tyr Arg Arg Ile Tyr Ile Asp 1405 1410 1415 gag gcg ttc act ctc
ggc ggc gag tac tgc gcg ttc gtt gcc agc 4336Glu Ala Phe Thr Leu Gly
Gly Glu Tyr Cys Ala Phe Val Ala Ser 1420 1425 1430 caa acc acc gcg
gag gtg atc tgc gtc ggt gat cgg gac cag tgc 4381Gln Thr Thr Ala Glu
Val Ile Cys Val Gly Asp Arg Asp Gln Cys 1435 1440 1445 ggc cca cac
tac gcc aat aac tgc cgc acc ccc gtc cct gac cgc 4426Gly Pro His Tyr
Ala Asn Asn Cys Arg Thr Pro Val Pro Asp Arg 1450 1455 1460 tgg cct
acc gag cgc tcg cgc cac act tgg cgc ttc ccc gac tgc 4471Trp Pro Thr
Glu Arg Ser Arg His Thr Trp Arg Phe Pro Asp Cys 1465 1470 1475 tgg
gcg gcc cgc ctg cgc gcg ggg ctc gat tat gac atc gag ggc 4516Trp Ala
Ala Arg Leu Arg Ala Gly Leu Asp Tyr Asp Ile Glu Gly 1480 1485 1490
gag cgc acc ggc acc ttc gcc tgc aac ctt tgg gac ggc cgc cag 4561Glu
Arg Thr Gly Thr Phe Ala Cys Asn Leu Trp Asp Gly Arg Gln 1495 1500
1505 gtc gac ctt cac ctc gcc ttc tcg cgc gaa acc gtg cgc cgc ctt
4606Val Asp Leu His Leu Ala Phe Ser Arg Glu Thr Val Arg Arg Leu
1510 1515 1520 cac gag gct ggc ata cgc gca tac acc gtg cgc gag gcc
cag ggt 4651His Glu Ala Gly Ile Arg Ala Tyr Thr Val Arg Glu Ala Gln
Gly 1525 1530 1535 atg agc gtc ggc acc gcc tgc atc cat gta ggc aga
gac ggc acc 4696Met Ser Val Gly Thr Ala Cys Ile His Val Gly Arg Asp
Gly Thr 1540 1545 1550 gac gtt gcc ctg gcg ctg aca cgc gac ctc gcc
atc gtc agc ctg 4741Asp Val Ala Leu Ala Leu Thr Arg Asp Leu Ala Ile
Val Ser Leu 1555 1560 1565 acc cgg gcc tcc gac gca ctc tac ctc cac
gag ctc gag gac ggc 4786Thr Arg Ala Ser Asp Ala Leu Tyr Leu His Glu
Leu Glu Asp Gly 1570 1575 1580 tca ctg cgc gct gcg ggg ctc agc gcg
ttc ctc gac gcc ggg gca 4831Ser Leu Arg Ala Ala Gly Leu Ser Ala Phe
Leu Asp Ala Gly Ala 1585 1590 1595 ctg gcg gag ctc aag gag gtt ccc
gct ggc att gac cgc gtt gtc 4876Leu Ala Glu Leu Lys Glu Val Pro Ala
Gly Ile Asp Arg Val Val 1600 1605 1610 gcc gtc gag cag gca cca cca
ccg ttg ccg ccc gcc gac ggc atc 4921Ala Val Glu Gln Ala Pro Pro Pro
Leu Pro Pro Ala Asp Gly Ile 1615 1620 1625 ccc gag gcc caa gac gtg
ccg ccc ttc tgc ccc cgc act ctg gag 4966Pro Glu Ala Gln Asp Val Pro
Pro Phe Cys Pro Arg Thr Leu Glu 1630 1635 1640 gag ctc gtc ttc ggc
cgt gcc ggc cac ccc cat tac gcg gac ctc 5011Glu Leu Val Phe Gly Arg
Ala Gly His Pro His Tyr Ala Asp Leu 1645 1650 1655 aac cgc gtg act
gag ggc gaa cga gaa gtg cgg tat atg cgc atc 5056Asn Arg Val Thr Glu
Gly Glu Arg Glu Val Arg Tyr Met Arg Ile 1660 1665 1670 tcg cgt cac
ctg ctc aac aag aat cac acc gag atg ccc gga acg 5101Ser Arg His Leu
Leu Asn Lys Asn His Thr Glu Met Pro Gly Thr 1675 1680 1685 gaa cgc
gtt ctc agt gcc gtt tgc gcc gtg cgg cgc tac cgc gcg 5146Glu Arg Val
Leu Ser Ala Val Cys Ala Val Arg Arg Tyr Arg Ala 1690 1695 1700 ggc
gag gat ggg tcg acc ctc cgc act gct gtg gcc cgc cag cac 5191Gly Glu
Asp Gly Ser Thr Leu Arg Thr Ala Val Ala Arg Gln His 1705 1710 1715
ccg cgc cct ttt cgc cag atc cca ccc ccg cgc gtc act gct ggg 5236Pro
Arg Pro Phe Arg Gln Ile Pro Pro Pro Arg Val Thr Ala Gly 1720 1725
1730 gtc gcc cag gag tgg cgc atg acg tac ttg cgg gaa cgg atc gac
5281Val Ala Gln Glu Trp Arg Met Thr Tyr Leu Arg Glu Arg Ile Asp
1735 1740 1745 ctc act gac gtc tac acg cag atg ggc gtg gcc gcg cgg
gag ctc 5326Leu Thr Asp Val Tyr Thr Gln Met Gly Val Ala Ala Arg Glu
Leu 1750 1755 1760 acc gac cgc tac gcg cgc cgc tat cct gag atc ttc
gcc ggc atg 5371Thr Asp Arg Tyr Ala Arg Arg Tyr Pro Glu Ile Phe Ala
Gly Met 1765 1770 1775 tgt acc gcc cag agc ctg agc gtc ccc gcc ttc
ctc aaa gcc acc 5416Cys Thr Ala Gln Ser Leu Ser Val Pro Ala Phe Leu
Lys Ala Thr 1780 1785 1790 ttg aag tgc gta gac gcc gcc ctc ggc ccc
agg gac acc gag gac 5461Leu Lys Cys Val Asp Ala Ala Leu Gly Pro Arg
Asp Thr Glu Asp 1795 1800 1805 tgc cac gcc gct cag ggg aaa gcc ggc
ctt gag atc cgt gcg tgg 5506Cys His Ala Ala Gln Gly Lys Ala Gly Leu
Glu Ile Arg Ala Trp 1810 1815 1820 gcc aag gag tgg gtt cag gtt atg
tcc ccg cat ttc cgc gcg atc 5551Ala Lys Glu Trp Val Gln Val Met Ser
Pro His Phe Arg Ala Ile 1825 1830 1835 cag aag atc atc atg cgc gcc
ttg cgc ccg caa ttc ctt gtg gcc 5596Gln Lys Ile Ile Met Arg Ala Leu
Arg Pro Gln Phe Leu Val Ala 1840 1845 1850 gct ggc cat acg gag ccc
gag gtc gat gcg tgg tgg cag gct cat 5641Ala Gly His Thr Glu Pro Glu
Val Asp Ala Trp Trp Gln Ala His 1855 1860 1865 tac acc acc aac gcc
atc gag gtc gac ttc act gag ttc gac atg 5686Tyr Thr Thr Asn Ala Ile
Glu Val Asp Phe Thr Glu Phe Asp Met 1870 1875 1880 aac cag acc ctc
gct act cgg gac gtc gag ctc gag att agc gcc 5731Asn Gln Thr Leu Ala
Thr Arg Asp Val Glu Leu Glu Ile Ser Ala 1885 1890 1895 gct ctc ttg
ggc ctc cct tgc gcc gaa gac tac cgc gcg ctc cgc 5776Ala Leu Leu Gly
Leu Pro Cys Ala Glu Asp Tyr Arg Ala Leu Arg 1900 1905 1910 gcc ggc
agc tac tgc acc ctg cgc gaa ctg ggc tcc act gag acc 5821Ala Gly Ser
Tyr Cys Thr Leu Arg Glu Leu Gly Ser Thr Glu Thr 1915 1920 1925 ggc
tgc gag cgc aca agc ggc gag ccc gcc acg ctg ctg cac aac 5866Gly Cys
Glu Arg Thr Ser Gly Glu Pro Ala Thr Leu Leu His Asn 1930 1935 1940
acc acc gtg gcc atg tgc atg gcc atg cgc atg gtc ccc aaa ggc 5911Thr
Thr Val Ala Met Cys Met Ala Met Arg Met Val Pro Lys Gly 1945 1950
1955 gtg cgc tgg gct ggg att ttc cag ggt gac gat atg gtc atc ttc
5956Val Arg Trp Ala Gly Ile Phe Gln Gly Asp Asp Met Val Ile Phe
1960 1965 1970 ctc ccc gag ggc gcg cgc agt gcg gca ctc aag tgg acc
ccc gcc 6001Leu Pro Glu Gly Ala Arg Ser Ala Ala Leu Lys Trp Thr Pro
Ala 1975 1980 1985 gag gtg ggc ttg ttc ggc ttc cac atc ccg gtg aag
cat gtg agc 6046Glu Val Gly Leu Phe Gly Phe His Ile Pro Val Lys His
Val Ser 1990 1995 2000 acc cct acc ccc agc ttc tgc ggg cac gtc ggc
acc gcg gcc ggc 6091Thr Pro Thr Pro Ser Phe Cys Gly His Val Gly Thr
Ala Ala Gly 2005 2010 2015 ctc ttc cat gat gtc atg cac cag gcg atc
aag gtg ctt tgc cgc 6136Leu Phe His Asp Val Met His Gln Ala Ile Lys
Val Leu Cys Arg 2020 2025 2030 cgt ttc gac cca gac gtg ctt gaa gaa
cag cag gtg gcc ctc ctc 6181Arg Phe Asp Pro Asp Val Leu Glu Glu Gln
Gln Val Ala Leu Leu 2035 2040 2045 gac cgc ctc cgg ggg gtc tac gcg
gct ctg cct gac acc gtt gcc 6226Asp Arg Leu Arg Gly Val Tyr Ala Ala
Leu Pro Asp Thr Val Ala 2050 2055 2060 gcc aat gct gcg tac tac gac
tac agc gcg gag cgc gtc ctc gct 6271Ala Asn Ala Ala Tyr Tyr Asp Tyr
Ser Ala Glu Arg Val Leu Ala 2065 2070 2075 atc gtg cgc gaa ctt acc
gcg tac gcg cgg ggg cgc ggc ctc gac 6316Ile Val Arg Glu Leu Thr Ala
Tyr Ala Arg Gly Arg Gly Leu Asp 2080 2085 2090 cac ccg gcc acc atc
ggc gcg ctc gag gag att cag acc ccc tac 6361His Pro Ala Thr Ile Gly
Ala Leu Glu Glu Ile Gln Thr Pro Tyr 2095 2100 2105 gcg cgc gcc aat
ctc cac gac gct gac taa cgcccctgta cgtggggcct 6411Ala Arg Ala Asn
Leu His Asp Ala Asp 2110 2115 ttaatcttac ctactctaac caggtcatca
cccaccgttg tttcgccgca tctggtgggt 6471acccaacttt tgccattcgg
gagagcccca gggtgcccga atg gct tct act acc 6526 Met Ala Ser Thr Thr
2120 ccc atc acc atg gag gac ctc cag aag gcc ctc gag aca caa tcc
6571Pro Ile Thr Met Glu Asp Leu Gln Lys Ala Leu Glu Thr Gln Ser
2125 2130 2135 cgc gcc ctg cgc gcg gaa ctc gcc gcc ggc gcc tcg cag
tcg cgc 6616Arg Ala Leu Arg Ala Glu Leu Ala Ala Gly Ala Ser Gln Ser
Arg 2140 2145 2150 cgg ccg cgg ccg ccg cga cag cgc gac tcc agc acc
acc gga gat 6661Arg Pro Arg Pro Pro Arg Gln Arg Asp Ser Ser Thr Thr
Gly Asp 2155 2160 2165 gac tcc ggc cgt gac tcc gga ggg ccc cgc cgc
cgc cgc ggc aac 6706Asp Ser Gly Arg Asp Ser Gly Gly Pro Arg Arg Arg
Arg Gly Asn 2170 2175 2180 cgg ggc cgt ggc cag cgc agg gac tgg tcc
agg gcc ccg ccc ccc 6751Arg Gly Arg Gly Gln Arg Arg Asp Trp Ser Arg
Ala Pro Pro Pro 2185 2190 2195 ccg gag gag cgg caa gaa act cgc tcc
cag act ccg gcc ccg aag 6796Pro Glu Glu Arg Gln Glu Thr Arg Ser Gln
Thr Pro Ala Pro Lys 2200 2205 2210 cca tcg cgg gcg ccg cca caa cag
cct caa ccc ccg cgt atg caa 6841Pro Ser Arg Ala Pro Pro Gln Gln Pro
Gln Pro Pro Arg Met Gln 2215 2220 2225 acc ggg cgt ggg ggc tct gcc
ccg cgc ccc gag ctg ggg cca ccg 6886Thr Gly Arg Gly Gly Ser Ala Pro
Arg Pro Glu Leu Gly Pro Pro 2230 2235 2240 acc aac ccg ttc caa gca
gcc gtg gcg cgt ggc ctg cgc ccg cct 6931Thr Asn Pro Phe Gln Ala Ala
Val Ala Arg Gly Leu Arg Pro Pro 2245 2250 2255 ctc cac gac cct gac
acc gag gca ccc acc gag gcc tgc gtg acc 6976Leu His Asp Pro Asp Thr
Glu Ala Pro Thr Glu Ala Cys Val Thr 2260 2265 2270 tca tgg ctt tgg
agc gag ggc gaa ggc gcg gtc ttt tac cgc gtc 7021Ser Trp Leu Trp Ser
Glu Gly Glu Gly Ala Val Phe Tyr Arg Val 2275 2280 2285 gac ctg cat
ttc acc aac ctg ggc acc ccc cca ctc gac gag gac 7066Asp Leu His Phe
Thr Asn Leu Gly Thr Pro Pro Leu Asp Glu Asp 2290 2295 2300
ggc cgc tgg gac cct gcg ctc atg tac aac cct tgc ggg ccc gag 7111Gly
Arg Trp Asp Pro Ala Leu Met Tyr Asn Pro Cys Gly Pro Glu 2305 2310
2315 ccg ccc gct cac gtc gtc cgc gcg tac aat caa cct gcc ggc gac
7156Pro Pro Ala His Val Val Arg Ala Tyr Asn Gln Pro Ala Gly Asp
2320 2325 2330 gtc agg ggc gtt tgg ggt aaa ggt gag cgc acc tac gcc
gag cag 7201Val Arg Gly Val Trp Gly Lys Gly Glu Arg Thr Tyr Ala Glu
Gln 2335 2340 2345 gat ttc cgc gtc ggc ggc acg cgc tgg cac cga ctg
ctg cgc atg 7246Asp Phe Arg Val Gly Gly Thr Arg Trp His Arg Leu Leu
Arg Met 2350 2355 2360 cca gtg cgc ggc ctc gac ggc gac agc gcc ccg
ctt ccc ccc cac 7291Pro Val Arg Gly Leu Asp Gly Asp Ser Ala Pro Leu
Pro Pro His 2365 2370 2375 acc acc gag cgc att gag acc cgc tcg gcg
cgc cat cct tgg cgc 7336Thr Thr Glu Arg Ile Glu Thr Arg Ser Ala Arg
His Pro Trp Arg 2380 2385 2390 atc cgc ttc ggt gcc ccc cag gcc ttc
ctt gcc ggg ctc ttg ctc 7381Ile Arg Phe Gly Ala Pro Gln Ala Phe Leu
Ala Gly Leu Leu Leu 2395 2400 2405 gcc gcg gtc gcc gtt ggc acc gcg
cgc gcc ggg ctc cag ccc cgc 7426Ala Ala Val Ala Val Gly Thr Ala Arg
Ala Gly Leu Gln Pro Arg 2410 2415 2420 gct gat atg gcg gca cct cct
acg ctg ccg cag ccc ccc cgt gcg 7471Ala Asp Met Ala Ala Pro Pro Thr
Leu Pro Gln Pro Pro Arg Ala 2425 2430 2435 cac ggg cag cat tac ggc
cac cac cac cat cag ctg ccg ttc ctc 7516His Gly Gln His Tyr Gly His
His His His Gln Leu Pro Phe Leu 2440 2445 2450 ggg cac gac ggc cat
cat ggc ggc acc ttg cgc gtc ggc cag cat 7561Gly His Asp Gly His His
Gly Gly Thr Leu Arg Val Gly Gln His 2455 2460 2465 cac cga aac gcc
agc gac gtg ctg ccc ggc cac tgg ctc caa ggc 7606His Arg Asn Ala Ser
Asp Val Leu Pro Gly His Trp Leu Gln Gly 2470 2475 2480 ggc tgg ggt
tgc tac aac ctg agc gac tgg cac cag ggc act cat 7651Gly Trp Gly Cys
Tyr Asn Leu Ser Asp Trp His Gln Gly Thr His 2485 2490 2495 gtc tgt
cac acc aag cac atg gac ttt tgg tgt gtg gag cac gac 7696Val Cys His
Thr Lys His Met Asp Phe Trp Cys Val Glu His Asp 2500 2505 2510 cga
ccg ccg ccc gcg acc ccg acg cct ctc acc acc gcg gcg aac 7741Arg Pro
Pro Pro Ala Thr Pro Thr Pro Leu Thr Thr Ala Ala Asn 2515 2520 2525
tcc acg acc gcc gcc acc ccc gcc act gcg ccg gcc ccc tgc cac 7786Ser
Thr Thr Ala Ala Thr Pro Ala Thr Ala Pro Ala Pro Cys His 2530 2535
2540 gcc ggc ctc aat gac agc tgc ggc ggc ttc ttg tct ggg tgc ggg
7831Ala Gly Leu Asn Asp Ser Cys Gly Gly Phe Leu Ser Gly Cys Gly
2545 2550 2555 ccg atg cgc ctg cgc cac ggc gct gac acc cgg tgc ggt
cgg ttg 7876Pro Met Arg Leu Arg His Gly Ala Asp Thr Arg Cys Gly Arg
Leu 2560 2565 2570 atc tgc ggg ctg tct acc acc gcc cag tac ccg cct
acc cgg ttt 7921Ile Cys Gly Leu Ser Thr Thr Ala Gln Tyr Pro Pro Thr
Arg Phe 2575 2580 2585 ggc tgc gct atg cgg tgg ggc ctt ccc ccc tgg
gaa ctg gtc gtc 7966Gly Cys Ala Met Arg Trp Gly Leu Pro Pro Trp Glu
Leu Val Val 2590 2595 2600 ctt acc gcc cgc ccc gaa gac ggc tgg act
tgc cgc ggc gtg ccc 8011Leu Thr Ala Arg Pro Glu Asp Gly Trp Thr Cys
Arg Gly Val Pro 2605 2610 2615 gcc cac cca ggc acc cgc tgc ccc gaa
ctg gtg agc ccc atg gga 8056Ala His Pro Gly Thr Arg Cys Pro Glu Leu
Val Ser Pro Met Gly 2620 2625 2630 cgc gcg act tgc tcc cca gcc tcg
gcc ctc tgg ctc gcc aca gcg 8101Arg Ala Thr Cys Ser Pro Ala Ser Ala
Leu Trp Leu Ala Thr Ala 2635 2640 2645 aac gcg ctg tct ctt gat cac
gcc ctc gcg gcc ttc gtc ctg ctg 8146Asn Ala Leu Ser Leu Asp His Ala
Leu Ala Ala Phe Val Leu Leu 2650 2655 2660 gtc ccg tgg gtc ctg ata
ttc atg gtg tgc cgc cgc acc tgt cgc 8191Val Pro Trp Val Leu Ile Phe
Met Val Cys Arg Arg Thr Cys Arg 2665 2670 2675 cgc cgc ggc gcc gcc
gcc gcc ctc acc gcg gtc gtc ctg cag ggg 8236Arg Arg Gly Ala Ala Ala
Ala Leu Thr Ala Val Val Leu Gln Gly 2680 2685 2690 tac aac ccc ccc
gcc tat ggc gag gag gct ttc acc tac ctc tgc 8281Tyr Asn Pro Pro Ala
Tyr Gly Glu Glu Ala Phe Thr Tyr Leu Cys 2695 2700 2705 act gca ccg
ggg tgc gcc act caa gca cct gtc ccc gtg cgc ctc 8326Thr Ala Pro Gly
Cys Ala Thr Gln Ala Pro Val Pro Val Arg Leu 2710 2715 2720 gct ggc
gtc cgc ttt gag tcc aag att gtg gac ggc ggc tgc ttt 8371Ala Gly Val
Arg Phe Glu Ser Lys Ile Val Asp Gly Gly Cys Phe 2725 2730 2735 gcc
cca tgg gac ctc gag gcc act gga gcc tgc att tgc gag atc 8416Ala Pro
Trp Asp Leu Glu Ala Thr Gly Ala Cys Ile Cys Glu Ile 2740 2745 2750
ccc act gat gtc tcg tgc gag ggc ttg ggg gcc tgg gta ccc aca 8461Pro
Thr Asp Val Ser Cys Glu Gly Leu Gly Ala Trp Val Pro Thr 2755 2760
2765 gcc cct tgc gcg cgc atc tgg aat ggc aca cag cgc gcg tgc acc
8506Ala Pro Cys Ala Arg Ile Trp Asn Gly Thr Gln Arg Ala Cys Thr
2770 2775 2780 ttc tgg gct gtc aac gcc tac tcc tct ggc ggg tac gcg
cag ctg 8551Phe Trp Ala Val Asn Ala Tyr Ser Ser Gly Gly Tyr Ala Gln
Leu 2785 2790 2795 gcc tct tac ttc aac cct ggc ggc agc tac tac aag
cag tac cac 8596Ala Ser Tyr Phe Asn Pro Gly Gly Ser Tyr Tyr Lys Gln
Tyr His 2800 2805 2810 cct acc gcg tgc gag gtt gaa cct gcc ttc gga
cac agc gac gcg 8641Pro Thr Ala Cys Glu Val Glu Pro Ala Phe Gly His
Ser Asp Ala 2815 2820 2825 gcc tgc tgg ggc ttc ccc acc gac acc gtg
atg agc gtg ttc gcc 8686Ala Cys Trp Gly Phe Pro Thr Asp Thr Val Met
Ser Val Phe Ala 2830 2835 2840 ctt gct agc tac gtc cag cac cct cac
aag acc gtc cgg gtc aag 8731Leu Ala Ser Tyr Val Gln His Pro His Lys
Thr Val Arg Val Lys 2845 2850 2855 ttc cat aca gag acc agg acc gtc
tgg caa ctc tcc gtt gct ggc 8776Phe His Thr Glu Thr Arg Thr Val Trp
Gln Leu Ser Val Ala Gly 2860 2865 2870 gtg tcg tgc aac gtc acc act
gaa cac ccg ttc tgc aac acg ccg 8821Val Ser Cys Asn Val Thr Thr Glu
His Pro Phe Cys Asn Thr Pro 2875 2880 2885 cac gga caa ctc gag gtc
cag gtc ccg ccc gac ccc ggg gac ctg 8866His Gly Gln Leu Glu Val Gln
Val Pro Pro Asp Pro Gly Asp Leu 2890 2895 2900 gtt gag tac att atg
aac cac acc ggc aat cag cag tcc cgg tgg 8911Val Glu Tyr Ile Met Asn
His Thr Gly Asn Gln Gln Ser Arg Trp 2905 2910 2915 ggc ctc ggg agc
ccg aat tgc cat ggc ccc gat tgg gcc tcc ccg 8956Gly Leu Gly Ser Pro
Asn Cys His Gly Pro Asp Trp Ala Ser Pro 2920 2925 2930 gtt tgc caa
cgc cat tcc cct gac tgc tcg cgg ctt gtg ggg gct 9001Val Cys Gln Arg
His Ser Pro Asp Cys Ser Arg Leu Val Gly Ala 2935 2940 2945 acg cca
gag cgt ccc cgg ctg cgc ctg gtc gac gcc gac gac ccc 9046Thr Pro Glu
Arg Pro Arg Leu Arg Leu Val Asp Ala Asp Asp Pro 2950 2955 2960 ctg
ctg cgc act gcc cct ggg ccc ggc gag gtg tgg gtc acg cct 9091Leu Leu
Arg Thr Ala Pro Gly Pro Gly Glu Val Trp Val Thr Pro 2965 2970 2975
gtc ata ggc tct cag gcg cgc aag tgc gga ctc cac ata cgc gct 9136Val
Ile Gly Ser Gln Ala Arg Lys Cys Gly Leu His Ile Arg Ala 2980 2985
2990 gga ccg tac ggc cat gct acc gtc gaa atg ccc gag tgg atc cac
9181Gly Pro Tyr Gly His Ala Thr Val Glu Met Pro Glu Trp Ile His
2995 3000 3005 gcc cac acc acc agc gac ccc tgg cac cca ccg ggc ccc
ttg ggg 9226Ala His Thr Thr Ser Asp Pro Trp His Pro Pro Gly Pro Leu
Gly 3010 3015 3020 ctg aag ttc aag aca gtt cgc ccg gtg gcc ctg cca
cgc acg tta 9271Leu Lys Phe Lys Thr Val Arg Pro Val Ala Leu Pro Arg
Thr Leu 3025 3030 3035 gcg cca ccc cgc aat gtg cgt gtg acc ggg tgc
tac cag tgc ggt 9316Ala Pro Pro Arg Asn Val Arg Val Thr Gly Cys Tyr
Gln Cys Gly 3040 3045 3050 acc ccc gcg ctg gtg gaa ggc ctt gcc ccc
ggg gga ggg aat tgc 9361Thr Pro Ala Leu Val Glu Gly Leu Ala Pro Gly
Gly Gly Asn Cys 3055 3060 3065 cat ctc acc gtc aat ggc gag gat ctc
ggc gcc ttc ccc cct ggg 9406His Leu Thr Val Asn Gly Glu Asp Leu Gly
Ala Phe Pro Pro Gly 3070 3075 3080 aag ttc gtc acc gcc gcc ctc ctc
aac acc ccc ccg ccc tac caa 9451Lys Phe Val Thr Ala Ala Leu Leu Asn
Thr Pro Pro Pro Tyr Gln 3085 3090 3095 gtc agc tgc ggg ggc gag agc
gat cgc gcg agc gcg cgg gtc att 9496Val Ser Cys Gly Gly Glu Ser Asp
Arg Ala Ser Ala Arg Val Ile 3100 3105 3110 gac ccc gcc gcg caa tcg
ttt acc ggc gtg gtg tat ggc aca cac 9541Asp Pro Ala Ala Gln Ser Phe
Thr Gly Val Val Tyr Gly Thr His 3115 3120 3125 acc act gct gtg tcg
gag acc cgg cag acc tgg gcg gag tgg gct 9586Thr Thr Ala Val Ser Glu
Thr Arg Gln Thr Trp Ala Glu Trp Ala 3130 3135 3140 gct gcc cat tgg
tgg cag ctc act ctg ggc gcc att tgc gcc ctc 9631Ala Ala His Trp Trp
Gln Leu Thr Leu Gly Ala Ile Cys Ala Leu 3145 3150 3155 cta ctc gct
ggc tta ctc gct tgc tgt gcc aaa tgc ttg tac tac 9676Leu Leu Ala Gly
Leu Leu Ala Cys Cys Ala Lys Cys Leu Tyr Tyr 3160 3165 3170 ttg cgc
ggc gct ata gcg ccg cgc tag tgggcccccg cgcgaaaccc 9723Leu Arg Gly
Ala Ile Ala Pro Arg 3175 gcactagccc actagattcc cgcacctgtt gctgcatag
9762162116PRTRubella virus 16Met Glu Arg Leu Leu Asp Glu Val Leu
Ala Pro Gly Gly Pro Tyr Asn 1 5 10 15 Leu Thr Val Gly Ser Trp Val
Arg Asp His Val Arg Ser Ile Val Glu 20 25 30 Gly Ala Trp Glu Val
Arg Asp Val Val Ser Ala Ala Gln Lys Arg Ala 35 40 45 Ile Val Ala
Val Ile Pro Arg Pro Val Phe Thr Gln Met Gln Val Ser 50 55 60 Asp
His Pro Ala Leu His Ala Ile Ser Arg Tyr Thr Arg Arg His Trp 65 70
75 80 Ile Glu Trp Gly Pro Lys Glu Ala Leu His Val Leu Ile Asp Pro
Ser 85 90 95 Pro Gly Leu Leu Arg Glu Val Ala Arg Val Glu Arg Arg
Trp Val Ala 100 105 110 Leu Cys Leu His Arg Thr Ala Arg Lys Leu Ala
Thr Ala Leu Ala Glu 115 120 125 Thr Ala Ser Glu Ala Trp His Ala Asp
Tyr Val Cys Ala Leu Arg Gly 130 135 140 Ala Pro Ser Gly Pro Phe Tyr
Val His Pro Glu Asp Val Pro His Gly 145 150 155 160 Gly Arg Ala Val
Ala Asp Arg Cys Leu Leu Tyr Tyr Thr Pro Met Gln 165 170 175 Met Cys
Glu Leu Met Arg Thr Ile Asp Ala Thr Leu Leu Val Ala Val 180 185 190
Asp Leu Trp Pro Val Ala Leu Ala Ala His Val Gly Asp Asp Trp Asp 195
200 205 Asp Leu Gly Ile Ala Trp His Leu Asp His Asp Gly Gly Cys Pro
Ala 210 215 220 Asp Cys Arg Gly Ala Gly Ala Gly Pro Thr Pro Gly Tyr
Thr Arg Pro 225 230 235 240 Cys Thr Thr Arg Ile Tyr Gln Val Leu Pro
Asp Thr Ala His Pro Gly 245 250 255 Arg Leu Tyr Arg Cys Gly Pro Arg
Leu Trp Thr Arg Asp Cys Ala Val 260 265 270 Ala Glu Leu Ser Trp Glu
Val Ala Gln His Cys Gly His Gln Ala Arg 275 280 285 Val Arg Ala Val
Arg Cys Thr Leu Pro Ile Arg His Val Arg Ser Leu 290 295 300 Gln Pro
Ser Ala Arg Val Arg Leu Pro Asp Leu Val His Leu Ala Glu 305 310 315
320 Val Gly Arg Trp Arg Trp Phe Ser Leu Pro Arg Pro Val Phe Gln Arg
325 330 335 Met Leu Ser Tyr Cys Lys Thr Leu Ser Pro Asp Ala Tyr Tyr
Ser Glu 340 345 350 Arg Val Phe Lys Phe Lys Asn Ala Leu Ser His Ser
Ile Thr Leu Ala 355 360 365 Gly Asn Val Leu Gln Glu Gly Trp Lys Gly
Thr Cys Ala Glu Glu Asp 370 375 380 Ala Leu Cys Ala Tyr Val Ala Phe
Arg Ala Trp Gln Ser Asn Ala Arg 385 390 395 400 Leu Ala Gly Ile Met
Lys Ser Ala Lys Arg Cys Ala Ala Asp Ser Leu 405 410 415 Ser Val Ala
Gly Trp Leu Asp Thr Ile Trp Gly Ala Ile Lys Arg Phe 420 425 430 Phe
Gly Ser Val Pro Leu Ala Glu Arg Met Glu Glu Trp Glu Gln Asp 435 440
445 Ala Ala Val Ala Ala Phe Asp Arg Gly Pro Leu Glu Asp Gly Gly Arg
450 455 460 His Leu Asp Thr Val Gln Pro Pro Lys Ser Pro Pro Arg Pro
Glu Ile 465 470 475 480 Ala Ala Thr Trp Ile Val His Ala Ala Ser Ala
Asp Arg His Cys Ala 485 490 495 Cys Ala Pro Arg Cys Asp Val Pro Arg
Glu Arg Pro Ser Ala Pro Ala 500 505 510 Gly Pro Pro Asp Asp Glu Ala
Leu Ile Pro Pro Trp Leu Phe Ala Glu 515 520 525 His Arg Ala Leu Arg
Cys Arg Glu Trp Asp Phe Glu Val Leu Arg Ala 530 535 540 Arg Ala Asp
Thr Ala Ala Ala Pro Ala Pro Leu Ala Pro Arg Pro Ala 545 550 555 560
Arg Tyr Pro Thr Val Leu Tyr Arg His Pro Ala His His Gly Pro Trp 565
570 575 Leu Thr Leu Asp Glu Pro Gly Glu Ala Asp Ala Ala Leu Val Leu
Cys 580 585 590 Asp Pro Leu Gly Gln Pro Leu Arg Gly Pro Glu Arg His
Phe Ala Ala 595 600 605 Gly Ala His Met Cys Ala Gln Ala Arg Gly Leu
Gln Ala Phe Val Arg 610 615 620 Val Val Pro Pro Pro Glu Arg Pro Trp
Ala Asp Gly Gly Ala Arg Ala 625 630 635 640 Trp Ala Lys Phe Phe Arg
Gly Cys Ala Trp Ala Gln Arg Leu Leu Gly 645 650 655 Glu Pro Ala Val
Met His Leu Pro Tyr Thr Asp Gly Asp Val Pro Gln 660
665 670 Leu Ile Ala Leu Ala Leu Arg Thr Leu Ala Gln Gln Gly Ala Ala
Leu 675 680 685 Ala Leu Ser Val Arg Asp Leu Pro Gly Gly Ala Ala Phe
Asp Ala Asn 690 695 700 Ala Val Thr Ala Ala Val Arg Ala Gly Pro Gly
Gln Ser Ala Ala Thr 705 710 715 720 Ser Ser Pro Pro Gly Asp Pro Pro
Pro Pro Arg Cys Ala Arg Arg Ser 725 730 735 Gln Arg His Ser Asp Ala
Arg Gly Thr Pro Pro Pro Ala Pro Ala Arg 740 745 750 Asp Pro Pro Pro
Pro Ala Pro Ser Pro Pro Ala Pro Pro Arg Ala Gly 755 760 765 Asp Pro
Val Pro Pro Thr Ser Ala Gly Pro Ala Asp Arg Ala Arg Asp 770 775 780
Ala Glu Leu Glu Val Ala Tyr Glu Pro Ser Gly Pro Pro Thr Ser Thr 785
790 795 800 Lys Ala Asp Pro Asp Ser Asp Ile Val Glu Ser Tyr Ala Arg
Ala Ala 805 810 815 Gly Pro Val His Leu Arg Val Arg Asp Ile Met Asp
Pro Pro Pro Gly 820 825 830 Cys Lys Val Val Val Asn Ala Ala Asn Glu
Gly Leu Leu Ala Gly Ser 835 840 845 Gly Val Cys Gly Ala Ile Phe Ala
Asn Ala Thr Ala Ala Leu Ala Ala 850 855 860 Asp Cys Arg Arg Leu Ala
Pro Cys Pro Thr Gly Glu Ala Val Ala Thr 865 870 875 880 Pro Gly His
Gly Cys Gly Tyr Thr His Ile Ile His Ala Val Ala Pro 885 890 895 Arg
Arg Pro Arg Asp Pro Ala Ala Leu Glu Glu Gly Glu Ala Leu Leu 900 905
910 Glu Arg Ala Tyr Arg Ser Ile Val Ala Leu Ala Ala Ala Arg Arg Trp
915 920 925 Ala Arg Val Ala Cys Pro Leu Leu Gly Ala Gly Val Tyr Gly
Trp Ser 930 935 940 Ala Ala Glu Ser Leu Arg Ala Ala Leu Ala Ala Thr
Arg Thr Glu Pro 945 950 955 960 Ala Glu Arg Val Ser Leu His Ile Cys
His Pro Asp Arg Ala Thr Leu 965 970 975 Thr His Ala Ser Val Leu Val
Gly Ala Gly Leu Ala Ala Arg Arg Val 980 985 990 Ser Pro Pro Pro Thr
Glu Pro Leu Ala Ser Cys Pro Ala Gly Asp Pro 995 1000 1005 Gly Arg
Pro Ala Gln Arg Ser Ala Ser Pro Pro Ala Thr Pro Leu 1010 1015 1020
Gly Asp Ala Thr Ala Pro Glu Pro Arg Gly Cys Gln Gly Cys Glu 1025
1030 1035 Leu Cys Arg Tyr Thr Arg Val Thr Asn Asp Arg Ala Tyr Val
Asn 1040 1045 1050 Leu Trp Leu Glu Arg Asp Arg Gly Ala Thr Ser Trp
Ala Met Arg 1055 1060 1065 Ile Pro Glu Val Val Val Tyr Gly Pro Glu
His Leu Ala Thr His 1070 1075 1080 Phe Pro Leu Asn His Tyr Ser Val
Leu Lys Pro Ala Glu Val Arg 1085 1090 1095 Pro Pro Arg Gly Met Cys
Gly Ser Asp Met Trp Arg Cys Arg Gly 1100 1105 1110 Trp Gln Gly Val
Pro Gln Val Arg Cys Thr Pro Ser Asn Ala His 1115 1120 1125 Ala Ala
Leu Cys Arg Thr Gly Val Pro Pro Arg Val Ser Thr Arg 1130 1135 1140
Gly Gly Glu Leu Asp Pro Asn Thr Cys Trp Leu Arg Ala Ala Ala 1145
1150 1155 Asn Val Ala Gln Ala Ala Arg Ala Cys Gly Ala Tyr Thr Ser
Ala 1160 1165 1170 Gly Cys Pro Arg Cys Ala Tyr Gly Arg Ala Leu Ser
Glu Ala Arg 1175 1180 1185 Thr His Lys Asp Phe Ala Ala Leu Ser Gln
Arg Trp Ser Ala Ser 1190 1195 1200 His Ala Asp Ala Ser Ser Asp Gly
Thr Gly Asp Pro Leu Asp Pro 1205 1210 1215 Leu Met Glu Thr Val Gly
Cys Ala Cys Ser Arg Val Trp Val Gly 1220 1225 1230 Ser Glu His Glu
Ala Pro Pro Asp His Leu Leu Val Ser Leu His 1235 1240 1245 Arg Ala
Pro Asn Gly Pro Trp Gly Val Val Leu Glu Val Arg Ala 1250 1255 1260
Arg Pro Glu Gly Gly Asn Pro Thr Gly His Phe Val Cys Ala Val 1265
1270 1275 Gly Gly Gly Pro Arg Arg Val Ser Asp Arg Pro His Leu Trp
Leu 1280 1285 1290 Ala Val Pro Leu Ser Arg Gly Gly Gly Thr Cys Ala
Ala Thr Asp 1295 1300 1305 Glu Gly Leu Ala Gln Ala Tyr Tyr Asp Asp
Leu Glu Val Arg Arg 1310 1315 1320 Leu Gly Asp Asp Ala Met Ala Arg
Ala Ala Leu Ala Ser Val Gln 1325 1330 1335 Arg Pro Arg Lys Gly Pro
Tyr Asn Ile Arg Val Trp Asn Met Ala 1340 1345 1350 Ala Gly Ala Gly
Lys Thr Thr Arg Ile Leu Ala Ala Phe Thr Arg 1355 1360 1365 Glu Asp
Leu Tyr Val Cys Pro Thr Asn Ala Leu Leu His Glu Ile 1370 1375 1380
Gln Ala Lys Leu Arg Ala Arg Asp Ile Glu Ile Lys Asn Ala Ala 1385
1390 1395 Thr Tyr Glu Arg Ala Leu Thr Lys Pro Leu Ala Ala Tyr Arg
Arg 1400 1405 1410 Ile Tyr Ile Asp Glu Ala Phe Thr Leu Gly Gly Glu
Tyr Cys Ala 1415 1420 1425 Phe Val Ala Ser Gln Thr Thr Ala Glu Val
Ile Cys Val Gly Asp 1430 1435 1440 Arg Asp Gln Cys Gly Pro His Tyr
Ala Asn Asn Cys Arg Thr Pro 1445 1450 1455 Val Pro Asp Arg Trp Pro
Thr Glu Arg Ser Arg His Thr Trp Arg 1460 1465 1470 Phe Pro Asp Cys
Trp Ala Ala Arg Leu Arg Ala Gly Leu Asp Tyr 1475 1480 1485 Asp Ile
Glu Gly Glu Arg Thr Gly Thr Phe Ala Cys Asn Leu Trp 1490 1495 1500
Asp Gly Arg Gln Val Asp Leu His Leu Ala Phe Ser Arg Glu Thr 1505
1510 1515 Val Arg Arg Leu His Glu Ala Gly Ile Arg Ala Tyr Thr Val
Arg 1520 1525 1530 Glu Ala Gln Gly Met Ser Val Gly Thr Ala Cys Ile
His Val Gly 1535 1540 1545 Arg Asp Gly Thr Asp Val Ala Leu Ala Leu
Thr Arg Asp Leu Ala 1550 1555 1560 Ile Val Ser Leu Thr Arg Ala Ser
Asp Ala Leu Tyr Leu His Glu 1565 1570 1575 Leu Glu Asp Gly Ser Leu
Arg Ala Ala Gly Leu Ser Ala Phe Leu 1580 1585 1590 Asp Ala Gly Ala
Leu Ala Glu Leu Lys Glu Val Pro Ala Gly Ile 1595 1600 1605 Asp Arg
Val Val Ala Val Glu Gln Ala Pro Pro Pro Leu Pro Pro 1610 1615 1620
Ala Asp Gly Ile Pro Glu Ala Gln Asp Val Pro Pro Phe Cys Pro 1625
1630 1635 Arg Thr Leu Glu Glu Leu Val Phe Gly Arg Ala Gly His Pro
His 1640 1645 1650 Tyr Ala Asp Leu Asn Arg Val Thr Glu Gly Glu Arg
Glu Val Arg 1655 1660 1665 Tyr Met Arg Ile Ser Arg His Leu Leu Asn
Lys Asn His Thr Glu 1670 1675 1680 Met Pro Gly Thr Glu Arg Val Leu
Ser Ala Val Cys Ala Val Arg 1685 1690 1695 Arg Tyr Arg Ala Gly Glu
Asp Gly Ser Thr Leu Arg Thr Ala Val 1700 1705 1710 Ala Arg Gln His
Pro Arg Pro Phe Arg Gln Ile Pro Pro Pro Arg 1715 1720 1725 Val Thr
Ala Gly Val Ala Gln Glu Trp Arg Met Thr Tyr Leu Arg 1730 1735 1740
Glu Arg Ile Asp Leu Thr Asp Val Tyr Thr Gln Met Gly Val Ala 1745
1750 1755 Ala Arg Glu Leu Thr Asp Arg Tyr Ala Arg Arg Tyr Pro Glu
Ile 1760 1765 1770 Phe Ala Gly Met Cys Thr Ala Gln Ser Leu Ser Val
Pro Ala Phe 1775 1780 1785 Leu Lys Ala Thr Leu Lys Cys Val Asp Ala
Ala Leu Gly Pro Arg 1790 1795 1800 Asp Thr Glu Asp Cys His Ala Ala
Gln Gly Lys Ala Gly Leu Glu 1805 1810 1815 Ile Arg Ala Trp Ala Lys
Glu Trp Val Gln Val Met Ser Pro His 1820 1825 1830 Phe Arg Ala Ile
Gln Lys Ile Ile Met Arg Ala Leu Arg Pro Gln 1835 1840 1845 Phe Leu
Val Ala Ala Gly His Thr Glu Pro Glu Val Asp Ala Trp 1850 1855 1860
Trp Gln Ala His Tyr Thr Thr Asn Ala Ile Glu Val Asp Phe Thr 1865
1870 1875 Glu Phe Asp Met Asn Gln Thr Leu Ala Thr Arg Asp Val Glu
Leu 1880 1885 1890 Glu Ile Ser Ala Ala Leu Leu Gly Leu Pro Cys Ala
Glu Asp Tyr 1895 1900 1905 Arg Ala Leu Arg Ala Gly Ser Tyr Cys Thr
Leu Arg Glu Leu Gly 1910 1915 1920 Ser Thr Glu Thr Gly Cys Glu Arg
Thr Ser Gly Glu Pro Ala Thr 1925 1930 1935 Leu Leu His Asn Thr Thr
Val Ala Met Cys Met Ala Met Arg Met 1940 1945 1950 Val Pro Lys Gly
Val Arg Trp Ala Gly Ile Phe Gln Gly Asp Asp 1955 1960 1965 Met Val
Ile Phe Leu Pro Glu Gly Ala Arg Ser Ala Ala Leu Lys 1970 1975 1980
Trp Thr Pro Ala Glu Val Gly Leu Phe Gly Phe His Ile Pro Val 1985
1990 1995 Lys His Val Ser Thr Pro Thr Pro Ser Phe Cys Gly His Val
Gly 2000 2005 2010 Thr Ala Ala Gly Leu Phe His Asp Val Met His Gln
Ala Ile Lys 2015 2020 2025 Val Leu Cys Arg Arg Phe Asp Pro Asp Val
Leu Glu Glu Gln Gln 2030 2035 2040 Val Ala Leu Leu Asp Arg Leu Arg
Gly Val Tyr Ala Ala Leu Pro 2045 2050 2055 Asp Thr Val Ala Ala Asn
Ala Ala Tyr Tyr Asp Tyr Ser Ala Glu 2060 2065 2070 Arg Val Leu Ala
Ile Val Arg Glu Leu Thr Ala Tyr Ala Arg Gly 2075 2080 2085 Arg Gly
Leu Asp His Pro Ala Thr Ile Gly Ala Leu Glu Glu Ile 2090 2095 2100
Gln Thr Pro Tyr Ala Arg Ala Asn Leu His Asp Ala Asp 2105 2110 2115
171063PRTRubella virus 17Met Ala Ser Thr Thr Pro Ile Thr Met Glu
Asp Leu Gln Lys Ala Leu 1 5 10 15 Glu Thr Gln Ser Arg Ala Leu Arg
Ala Glu Leu Ala Ala Gly Ala Ser 20 25 30 Gln Ser Arg Arg Pro Arg
Pro Pro Arg Gln Arg Asp Ser Ser Thr Thr 35 40 45 Gly Asp Asp Ser
Gly Arg Asp Ser Gly Gly Pro Arg Arg Arg Arg Gly 50 55 60 Asn Arg
Gly Arg Gly Gln Arg Arg Asp Trp Ser Arg Ala Pro Pro Pro 65 70 75 80
Pro Glu Glu Arg Gln Glu Thr Arg Ser Gln Thr Pro Ala Pro Lys Pro 85
90 95 Ser Arg Ala Pro Pro Gln Gln Pro Gln Pro Pro Arg Met Gln Thr
Gly 100 105 110 Arg Gly Gly Ser Ala Pro Arg Pro Glu Leu Gly Pro Pro
Thr Asn Pro 115 120 125 Phe Gln Ala Ala Val Ala Arg Gly Leu Arg Pro
Pro Leu His Asp Pro 130 135 140 Asp Thr Glu Ala Pro Thr Glu Ala Cys
Val Thr Ser Trp Leu Trp Ser 145 150 155 160 Glu Gly Glu Gly Ala Val
Phe Tyr Arg Val Asp Leu His Phe Thr Asn 165 170 175 Leu Gly Thr Pro
Pro Leu Asp Glu Asp Gly Arg Trp Asp Pro Ala Leu 180 185 190 Met Tyr
Asn Pro Cys Gly Pro Glu Pro Pro Ala His Val Val Arg Ala 195 200 205
Tyr Asn Gln Pro Ala Gly Asp Val Arg Gly Val Trp Gly Lys Gly Glu 210
215 220 Arg Thr Tyr Ala Glu Gln Asp Phe Arg Val Gly Gly Thr Arg Trp
His 225 230 235 240 Arg Leu Leu Arg Met Pro Val Arg Gly Leu Asp Gly
Asp Ser Ala Pro 245 250 255 Leu Pro Pro His Thr Thr Glu Arg Ile Glu
Thr Arg Ser Ala Arg His 260 265 270 Pro Trp Arg Ile Arg Phe Gly Ala
Pro Gln Ala Phe Leu Ala Gly Leu 275 280 285 Leu Leu Ala Ala Val Ala
Val Gly Thr Ala Arg Ala Gly Leu Gln Pro 290 295 300 Arg Ala Asp Met
Ala Ala Pro Pro Thr Leu Pro Gln Pro Pro Arg Ala 305 310 315 320 His
Gly Gln His Tyr Gly His His His His Gln Leu Pro Phe Leu Gly 325 330
335 His Asp Gly His His Gly Gly Thr Leu Arg Val Gly Gln His His Arg
340 345 350 Asn Ala Ser Asp Val Leu Pro Gly His Trp Leu Gln Gly Gly
Trp Gly 355 360 365 Cys Tyr Asn Leu Ser Asp Trp His Gln Gly Thr His
Val Cys His Thr 370 375 380 Lys His Met Asp Phe Trp Cys Val Glu His
Asp Arg Pro Pro Pro Ala 385 390 395 400 Thr Pro Thr Pro Leu Thr Thr
Ala Ala Asn Ser Thr Thr Ala Ala Thr 405 410 415 Pro Ala Thr Ala Pro
Ala Pro Cys His Ala Gly Leu Asn Asp Ser Cys 420 425 430 Gly Gly Phe
Leu Ser Gly Cys Gly Pro Met Arg Leu Arg His Gly Ala 435 440 445 Asp
Thr Arg Cys Gly Arg Leu Ile Cys Gly Leu Ser Thr Thr Ala Gln 450 455
460 Tyr Pro Pro Thr Arg Phe Gly Cys Ala Met Arg Trp Gly Leu Pro Pro
465 470 475 480 Trp Glu Leu Val Val Leu Thr Ala Arg Pro Glu Asp Gly
Trp Thr Cys 485 490 495 Arg Gly Val Pro Ala His Pro Gly Thr Arg Cys
Pro Glu Leu Val Ser 500 505 510 Pro Met Gly Arg Ala Thr Cys Ser Pro
Ala Ser Ala Leu Trp Leu Ala 515 520 525 Thr Ala Asn Ala Leu Ser Leu
Asp His Ala Leu Ala Ala Phe Val Leu 530 535 540 Leu Val Pro Trp Val
Leu Ile Phe Met Val Cys Arg Arg Thr Cys Arg 545 550 555 560 Arg Arg
Gly Ala Ala Ala Ala Leu Thr Ala Val Val Leu Gln Gly Tyr 565 570 575
Asn Pro Pro Ala Tyr Gly Glu Glu Ala Phe Thr Tyr Leu Cys Thr Ala 580
585 590 Pro Gly Cys Ala Thr Gln Ala Pro Val Pro Val Arg Leu Ala Gly
Val 595 600 605 Arg Phe Glu Ser Lys Ile Val Asp Gly Gly Cys Phe Ala
Pro Trp Asp 610 615 620 Leu Glu Ala Thr Gly Ala Cys Ile Cys Glu Ile
Pro Thr Asp Val Ser 625 630 635 640 Cys Glu Gly Leu Gly Ala Trp Val
Pro Thr Ala Pro Cys Ala Arg Ile 645 650 655 Trp Asn Gly Thr Gln Arg
Ala Cys Thr Phe Trp Ala Val Asn Ala Tyr 660 665 670 Ser Ser Gly Gly
Tyr Ala Gln Leu Ala Ser Tyr Phe Asn Pro Gly Gly 675 680 685 Ser Tyr
Tyr Lys Gln Tyr His Pro Thr Ala Cys Glu Val Glu Pro Ala 690 695 700
Phe Gly His Ser Asp Ala Ala Cys Trp Gly Phe Pro Thr Asp Thr Val 705
710 715 720 Met Ser Val Phe Ala Leu Ala Ser Tyr Val Gln His Pro His
Lys Thr 725 730 735 Val Arg Val Lys Phe His Thr Glu Thr Arg Thr Val
Trp Gln Leu Ser 740 745 750 Val Ala Gly Val Ser Cys Asn Val Thr Thr
Glu His Pro Phe Cys Asn 755 760 765 Thr Pro His Gly Gln Leu Glu Val
Gln Val Pro Pro Asp Pro Gly Asp 770 775 780 Leu Val Glu Tyr Ile Met
Asn His Thr Gly Asn Gln Gln Ser Arg Trp 785 790
795 800 Gly Leu Gly Ser Pro Asn Cys His Gly Pro Asp Trp Ala Ser Pro
Val 805 810 815 Cys Gln Arg His Ser Pro Asp Cys Ser Arg Leu Val Gly
Ala Thr Pro 820 825 830 Glu Arg Pro Arg Leu Arg Leu Val Asp Ala Asp
Asp Pro Leu Leu Arg 835 840 845 Thr Ala Pro Gly Pro Gly Glu Val Trp
Val Thr Pro Val Ile Gly Ser 850 855 860 Gln Ala Arg Lys Cys Gly Leu
His Ile Arg Ala Gly Pro Tyr Gly His 865 870 875 880 Ala Thr Val Glu
Met Pro Glu Trp Ile His Ala His Thr Thr Ser Asp 885 890 895 Pro Trp
His Pro Pro Gly Pro Leu Gly Leu Lys Phe Lys Thr Val Arg 900 905 910
Pro Val Ala Leu Pro Arg Thr Leu Ala Pro Pro Arg Asn Val Arg Val 915
920 925 Thr Gly Cys Tyr Gln Cys Gly Thr Pro Ala Leu Val Glu Gly Leu
Ala 930 935 940 Pro Gly Gly Gly Asn Cys His Leu Thr Val Asn Gly Glu
Asp Leu Gly 945 950 955 960 Ala Phe Pro Pro Gly Lys Phe Val Thr Ala
Ala Leu Leu Asn Thr Pro 965 970 975 Pro Pro Tyr Gln Val Ser Cys Gly
Gly Glu Ser Asp Arg Ala Ser Ala 980 985 990 Arg Val Ile Asp Pro Ala
Ala Gln Ser Phe Thr Gly Val Val Tyr Gly 995 1000 1005 Thr His Thr
Thr Ala Val Ser Glu Thr Arg Gln Thr Trp Ala Glu 1010 1015 1020 Trp
Ala Ala Ala His Trp Trp Gln Leu Thr Leu Gly Ala Ile Cys 1025 1030
1035 Ala Leu Leu Leu Ala Gly Leu Leu Ala Cys Cys Ala Lys Cys Leu
1040 1045 1050 Tyr Tyr Leu Arg Gly Ala Ile Ala Pro Arg 1055 1060
189762DNAArtificialdeoptimized rubella sequence 18caatgggagc
tatcggacct cgcttaggac tcctattccc atggagagat tattagatga 60ggtattagca
ccaggaggac catataactt aacagtagga tcatgggtaa gagaccacgt
120aagatcaatt gtagagggag catgggaagt aagagatgta gtatcagcag
cacaaaagag 180agcaatcgta gcagtaatac caagaccagt attcacgcag
atgcaggtat cagatcaccc 240agcattacac gcaatttcaa gatatacaag
aagacattgg atcgagtggg gaccaaaaga 300agcattacac gtattaatcg
acccatcacc aggattatta agagaggtag caagagtaga 360gagaagatgg
gtagcattat gtttacacag aagagcaaga aaattagcaa cagcattagc
420agagagagca tcagaggcat ggcacgcaga ctatgtatgt gcattaagag
gagcaccatc 480aggaccattc tatgtacacc cagaggacgt accacacgga
ggaagagcag tagcagacag 540atgtttatta tattatacac caatgcagat
gtgtgagtta atgagaacaa ttgacgcaac 600attattagta gcagtagact
tatggccagt agcattagca gcacacgtag gagacgactg 660ggacgactta
ggaattgcat ggcatttaga ccatgacgga ggatgtccag cagattgtag
720aggagcagga gcaggaccaa gaccaggata tacaagacca tgtacaacaa
gaatctatca 780agtattacca gacacagcac acccaggaag attatataga
tgtggaccaa gattatggag 840aagagattgt gcagtagcag aattatcatg
ggaggtagca caacactgtg gacaccaggc 900aagagtaaga gcagtaagat
gtacattacc aatcagacac gtaagatcat tacaaccatc 960agcaagagta
agattaccag acttagtaca tttagcagag gtaggaagat ggagatggtt
1020ctcattacca agaccagtat tccagagaat gttatcatat tgtaagacat
tatcaccaga 1080cgcatattat tcagagagag tattcaagtt caagaacgca
ttatcacact caatcagatt 1140agcaggaaat gtattacaag agggatggaa
gggaagatgt gcagaggaag acgcattatg 1200tgcatatgta gcattcagag
catggcagtc aaacgcaaga ttagcaggaa ttatgaaatc 1260agcaaagaga
tgtgcagcag actcattatc agtagcagga tggttagaca caatttgggg
1320agcaattaag agattcttcg gatcagtacc attagcagag agaatggagg
agtgggaaca 1380ggacgcagca gtagcagcat tcgacagagg accattagag
gacggaggaa gacacttaga 1440cacagtacaa ccaccaaaat caccaccaag
accagagatc gcagcaacat ggatcgtaca 1500cgcagcatca gcagacagac
attgtgcatg tgcaccaaga tgtgacgtac caagagaaag 1560accatcagca
ccagcaggac caccagatga cgaggcatta atcccaccat ggttattcgc
1620agagcacaga gcattaagat gtagagagtg ggatttcgag gtattaagag
caagagcaga 1680tagagcagca gcaccagcac cattagcacc aagaccagca
agatatccaa cagtattata 1740tagacaccca gcacaccacg gaccatggtt
aacattagac gagccaggag aggcagacgc 1800agcattagta ttatgtgacc
cattaggaca gccattaaga ggaccagaaa gacacttcgc 1860agcaggagca
catatgtgtg cacaggcaag aggattacag gcatttgtaa gagtagtacc
1920accaccagag agaccatggg cagacggagg agcaagagca tgggcaaagt
tcttcagagg 1980atgtgcatgg gcacagagat tattaggaga gccagcagta
atgcacttac catatacaga 2040tggagacgta ccacagttaa tcgcattagc
attaagaaga ttagcacaac agggagcagc 2100attagcatta tcagtaagag
acttaccagg aggagcagca ttcgacgcaa acgcagtaac 2160agcagcagta
agagcaggac caggacagtc agcagcaaga tcatcaccac caggagaccc
2220accaccacca agatgtgcaa gaagatcaca aagacactca gacgcaagag
gaacaccacc 2280accagcacca gcaagagacc caccaccacc agcaccatca
ccaccagcac caccaagagc 2340aggagaccca gtaccaccaa catcagcagg
accagcagat agagcaagag acgcagagtt 2400agaggtagca tatgaaccat
caggaccacc aagatcaaca aaggcagacc cagactcaga 2460catcgtagaa
tcatatgcaa gagcagcagg accagtacac ttaagagtaa gagacatcat
2520ggacccacca ccaggatgta aggtagtagt aaacgcagca aacgagggat
tattagcagg 2580atcaggagta tgtggagcaa tctttgcaaa cgcaagagca
gcattagcag cagactgtag 2640aagattagca ccatgtccaa caggagaggc
agtagcaaca ccaggacacg gatgtggata 2700tacacacatc atccacgcag
tagcaccaag aagaccaaga gacccagcag cattagagga 2760gggagaagca
ttattagaga gagcatatag atcaatcgta gcattagcag cagcaagaag
2820atgggcaaga gtagcatgtc cattattagg agcaggagta tatggatggt
cagcagcaga 2880gtcattaaga gcagcattag cagcaagaag aacagagcca
gcagagagag tatcattaca 2940catctgtcat ccagacagag caagattaag
acacgcatca gtattagtag gagcaggatt 3000agcagcaaga agagtatcac
caccaccaac agagccatta gcatcatgtc cagcaggaga 3060cccaggaaga
ccagcacaga gatcagcatc accaccagca acaccattag gagatgcaac
3120agcaccagag ccaagaggat gtcagggatg tgaattatgt agatatagaa
gagtaacaaa 3180tgacagagca tatgtaaact tatggttaga gagagacaga
ggagcaacat catgggcaat 3240gagaattcca gaggtagtag tatatggacc
agagcactta gcaagacatt ttccattaaa 3300ccactattca gtattaaagc
cagcagaggt aagaccacca agaggaatgt gtggatcaga 3360catgtggaga
tgtagaggat ggcagggagt accacaggta agatgtacac catcaaacgc
3420acacgcagca ttatgtagaa caggagtacc accaagagta tcaagaagag
gaggagagtt 3480agacccaaac acatgttggt taagagcagc agcaaacgta
gcacaggcag caagagcatg 3540tggagcatat agatcagcag gatgtccaag
atgtgcatat ggaagagcat tatcagaagc 3600aagaacacat aaggacttcg
cagcattatc acagagatgg tcagcatcac acgcagatgc 3660atcatcagac
ggaacaggag atccattaga cccattaatg gagacagtag gatgtgcatg
3720ttcaagagta tgggtaggat cagagcacga ggcaccacca gaccacttat
tagtatcatt 3780acacagagca ccaaatggac catggggagt agtattagag
gtaagagcaa gaccagaggg 3840aggaaaccca acaggacact tcgtatgtgc
agtaggagga ggaccaagaa gagtatcaga 3900cagaccacac ttatggttag
cagtaccatt atcaagagga ggaggaacat gtgcagcaac 3960agacgaggga
ttagcacagg catattatga cgacttagag gtaagaagat taggagatga
4020cgcaatggca agagcagcat tagcatcagt acaaagacca agaaaaggac
catataatat 4080cagagtatgg aacatggcag caggagcagg aaagacaaca
agaatcttag cagcattcag 4140aagagaagac ttatatgtat gtccaacaaa
tgcattatta cacgagatcc aggcaaaatt 4200aagagcaaga gatatcgaga
tcaagaacgc agcaacatat gagagagcat taagaaaacc 4260attagcagca
tatagaagaa tctatatcga tgaggcattc acattaggag gagagtattg
4320tgcattcgta gcatcacaaa caacagcaga ggtaatctgt gtaggagata
gagaccagtg 4380tggaccacac tatgcaaata actgtagaac accagtacca
gacagatggc caacagagag 4440atcaagacac acatggagat tcccagactg
ttgggcagca agattaagag caggattaga 4500ttatgacatc gagggagaga
gaacaggaac attcgcatgt aacttatggg acggaagaca 4560ggtagactta
cacttagcat tctcaagaga aacagtaaga agattacacg aggcaggaat
4620aagagcatat acagtaagag aggcacaggg aatgtcagta ggaacagcat
gtatccatgt 4680aggaagagac ggaacagacg tagcattagc attaacaaga
gacttagcaa tcgtatcatt 4740aacaagagca tcagacgcat tatatttaca
cgagttagag gacggatcat taagagcagc 4800aggattatca gcattcttag
acgcaggagc attagcagag ttaaaggagg taccagcagg 4860aattgacaga
gtagtagcag tagagcaggc accaccacca ttaccaccag cagacggaat
4920cccagaggca caagacgtac caccattctg tccaagaaca ttagaggagt
tagtattcgg 4980aagagcagga cacccacatt atgcagactt aaacagagta
acagagggag aaagagaagt 5040aagatatatg agaatctcaa gacacttatt
aaacaagaat cacacagaga tgccaggaag 5100agaaagagta ttatcagcag
tatgtgcagt aagaagatat agagcaggag aggatggatc 5160aacattaaga
acagcagtag caagacagca cccaagacca tttagacaga tcccaccacc
5220aagagtaaca gcaggagtag cacaggagtg gagaatgaga tatttaagag
aaagaatcga 5280cttaacagac gtatatagac agatgggagt agcagcaaga
gagttaacag acagatatgc 5340aagaagatat ccagagatct tcgcaggaat
gtgtacagca cagtcattat cagtaccagc 5400attcttaaaa gcaacattaa
agtgtgtaga cgcagcatta ggaccaagag acacagagga 5460ctgtcacgca
gcacagggaa aagcaggatt agagatcaga gcatgggcaa aggagtgggt
5520acaggtaatg tcaccacatt tcagagcaat ccagaagatc atcatgagag
cattaagacc 5580acaattctta gtagcagcag gacatagaga gccagaggta
gatgcatggt ggcaggcaca 5640ttatacaaca aacgcaatcg aggtagactt
cacagagttc gacatgaacc agacattagc 5700aacaagagac gtagagttag
agatttcagc agcattatta ggattaccat gtgcagaaga 5760ctatagagca
ttaagagcag gatcatattg tacattaaga gaattaggat caacagagac
5820aggatgtgag agaacatcag gagagccagc aagattatta cacaacacaa
cagtagcaat 5880gtgtatggca atgagaatgg taccaaaagg agtaagatgg
gcaggaattt tccagggaga 5940cgatatggta atcttcttac cagagggagc
aagatcagca gcattaaagt ggacaccagc 6000agaggtagga ttattcggat
tccacatccc agtaaagcat gtatcaacac caacaccatc 6060attctgtgga
cacgtaggaa cagcagcagg attattccat gatgtaatgc accaggcaat
6120caaggtatta tgtagaagat tcgacccaga cgtattagaa gaacagcagg
tagcattatt 6180agacagatta agaggagtat atgcagcatt accagacaca
gtagcagcaa atgcagcata 6240ttatgactat tcagcagaga gagtattagc
aatcgtaaga gaattaacag catatgcaag 6300aggaagagga ttagaccacc
cagcaacaat cggagcatta gaggagattc agacaccata 6360tgcaagagca
aatttacacg acgcagacta acgcccctgt acgtggggcc tttaatctta
6420cctactctaa ccaggtcatc acccaccgtt gtttcgccgc atctggtggg
tacccaactt 6480ttgccattcg ggagagcccc agggtgcccg aatggcatca
acaacaccaa tcacaatgga 6540ggacttacag aaggcattag agacacaatc
aagagcatta agagcagaat tagcagcagg 6600agcatcacag tcaagaagac
caagaccacc aagacagaga gactcatcaa caacaggaga 6660tgactcagga
agagactcag gaggaccaag aagaagaaga ggaaacagag gaagaggaca
6720gagaagagac tggtcaagag caccaccacc accagaggag agacaagaaa
caagatcaca 6780gacaccagca ccaaagccat caagagcacc accacaacag
ccacaaccac caagaatgca 6840aacaggaaga ggaggatcag caccaagacc
agagttagga ccaccaacaa acccattcca 6900agcagcagta gcaagaggat
taagaccacc attacacgac ccagacacag aggcaccaac 6960agaggcatgt
gtaacatcat ggttatggtc agagggagaa ggagcagtat tttatagagt
7020agacttacat ttcacaaact taggaacacc accattagac gaggacggaa
gatgggaccc 7080agcattaatg tataacccat gtggaccaga gccaccagca
cacgtagtaa gagcatataa 7140tcaaccagca ggagacgtaa gaggagtatg
gggaaaagga gagagaacat atgcagagca 7200ggatttcaga gtaggaggaa
gaagatggca cagattatta agaatgccag taagaggatt 7260agacggagac
tcagcaccat taccaccaca cacaacagag agaattgaga caagatcagc
7320aagacatcca tggagaatca gattcggagc accacaggca ttcttagcag
gattattatt 7380agcagcagta gcagtaggaa cagcaagagc aggattacag
ccaagagcag atatggcagc 7440accaccaaga ttaccacagc caccaagagc
acacggacag cattatggac accaccacca 7500tcagttacca ttcttaggac
acgacggaca tcatggagga acattaagag taggacagca 7560tcacagaaac
gcatcagacg tattaccagg acactggtta caaggaggat ggggatgtta
7620taacttatca gactggcacc agggaacaca tgtatgtcac acaaagcaca
tggacttttg 7680gtgtgtagag cacgacagac caccaccagc aacaccaaga
ccattaacaa cagcagcaaa 7740ctcaagaaca gcagcaacac cagcaacagc
accagcacca tgtcacgcag gattaaatga 7800ctcatgtgga ggattcttat
caggatgtgg accaatgaga ttaagacacg gagcagacac 7860aagatgtgga
agattaatct gtggattatc aacaacagca cagtatccac caacaagatt
7920tggatgtgca atgagatggg gattaccacc atgggaatta gtagtattaa
cagcaagacc 7980agaagacgga tggacatgta gaggagtacc agcacaccca
ggaacaagat gtccagaatt 8040agtatcacca atgggaagag caacatgttc
accagcatca gcattatggt tagcaacagc 8100aaacgcatta tcattagatc
acgcattagc agcattcgta ttattagtac catgggtatt 8160aatattcatg
gtatgtagaa gaacatgtag aagaagagga gcagcagcag cattaacagc
8220agtagtatta cagggatata acccaccagc atatggagag gaggcattca
catatttatg 8280tacagcacca ggatgtgcaa cacaagcacc agtaccagta
agattagcag gagtaagatt 8340tgagtcaaag attgtagacg gaggatgttt
tgcaccatgg gacttagagg caacaggagc 8400atgtatttgt gagatcccaa
cagatgtatc atgtgaggga ttaggagcat gggtaccaac 8460agcaccatgt
gcaagaatct ggaatggaac acagagagca tgtacattct gggcagtaaa
8520cgcatattca tcaggaggat atgcacagtt agcatcatat ttcaacccag
gaggatcata 8580ttataagcag tatcacccaa cagcatgtga ggtagaacca
gcattcggac actcagacgc 8640agcatgttgg ggattcccaa cagacacagt
aatgtcagta ttcgcattag catcatatgt 8700acagcaccca cacaagacag
taagagtaaa gttccataca gagacaagaa cagtatggca 8760attatcagta
gcaggagtat catgtaacgt aacaacagaa cacccattct gtaacagacc
8820acacggacaa ttagaggtac aggtaccacc agacccagga gacttagtag
agtatattat 8880gaaccacaca ggaaatcagc agtcaagatg gggattagga
tcaccaaatt gtcatggacc 8940agattgggca tcaccagtat gtcaaagaca
ttcaccagac tgttcaagat tagtaggagc 9000aagaccagag agaccaagat
taagattagt agacgcagac gacccattat taagaacagc 9060accaggacca
ggagaggtat gggtaagacc agtaatagga tcacaggcaa gaaagtgtgg
9120attacacata agagcaggac catatggaca tgcaacagta gaaatgccag
agtggatcca 9180cgcacacaca acatcagacc catggcaccc accaggacca
ttaggattaa agttcaagac 9240agtaagacca gtagcattac caagaagatt
agcaccacca agaaatgtaa gagtaacagg 9300atgttatcag tgtggaacac
cagcattagt agaaggatta gcaccaggag gaggaaattg 9360tcatttaaca
gtaaatggag aggatttagg agcattccca ccaggaaagt tcgtaacagc
9420agcattatta aacacaccac caccatatca agtatcatgt ggaggagagt
cagatagagc 9480atcagcaaga gtaattgacc cagcagcaca atcatttaca
ggagtagtat atggaacaca 9540cacaacagca gtatcagaga caagacagac
atgggcagag tgggcagcag cacattggtg 9600gcagttaact ttaggagcaa
tttgtgcatt attattagca ggattattag catgttgtgc 9660aaaatgttta
tattatttaa gaggagcaat agcaccaaga tagtgggccc ccgcgcgaaa
9720cccgcactag cccactagat tcccgcacct gttgctgcat ag
9762192526DNAVaricella zosterCDS(1)..(2526) 19atg ttt gcg cta gtt
tta gcg gtg gta att ctt cct ctt tgg acc acg 48Met Phe Ala Leu Val
Leu Ala Val Val Ile Leu Pro Leu Trp Thr Thr 1 5 10 15 gct aat aaa
tct tac gta aca cca acc cct gcg act cgc tct atc gga 96Ala Asn Lys
Ser Tyr Val Thr Pro Thr Pro Ala Thr Arg Ser Ile Gly 20 25 30 cat
atg tct gct ctt cta cga gaa tat tcc gac cgt aat atg tct ctg 144His
Met Ser Ala Leu Leu Arg Glu Tyr Ser Asp Arg Asn Met Ser Leu 35 40
45 aaa tta gaa gcc ttt tat cct act ggt ttc gat gaa gaa ctc att aaa
192Lys Leu Glu Ala Phe Tyr Pro Thr Gly Phe Asp Glu Glu Leu Ile Lys
50 55 60 tca ctt cac tgg gga aat gat aga aaa cac gtt ttc ttg gtt
att gtt 240Ser Leu His Trp Gly Asn Asp Arg Lys His Val Phe Leu Val
Ile Val 65 70 75 80 aag gtt aac cct aca aca cac gaa gga gac gtc ggg
ctg gtt ata ttt 288Lys Val Asn Pro Thr Thr His Glu Gly Asp Val Gly
Leu Val Ile Phe 85 90 95 cca aaa tac ttg tta tcg cca tac cat ttc
aaa gca gaa cat cga gca 336Pro Lys Tyr Leu Leu Ser Pro Tyr His Phe
Lys Ala Glu His Arg Ala 100 105 110 ccg ttt cct gct gga cgt ttt gga
ttt ctt agt cac cct gtg aca ccc 384Pro Phe Pro Ala Gly Arg Phe Gly
Phe Leu Ser His Pro Val Thr Pro 115 120 125 gac gtg agc ttc ttt gac
agt tcg ttt gcg ccg tat tta act acg caa 432Asp Val Ser Phe Phe Asp
Ser Ser Phe Ala Pro Tyr Leu Thr Thr Gln 130 135 140 cat ctt gtt gcg
ttt act acg ttc cca cca aac ccc ctt gta tgg cat 480His Leu Val Ala
Phe Thr Thr Phe Pro Pro Asn Pro Leu Val Trp His 145 150 155 160 ttg
gaa aga gct gag acc gca gca act gca gaa agg ccg ttt ggg gta 528Leu
Glu Arg Ala Glu Thr Ala Ala Thr Ala Glu Arg Pro Phe Gly Val 165 170
175 agt ctt tta ccc gct cgc cca aca gtc ccc aag aat act att ctt gaa
576Ser Leu Leu Pro Ala Arg Pro Thr Val Pro Lys Asn Thr Ile Leu Glu
180 185 190 cat aaa gcg cat ttt gct aca tgg gat gcc ctt gcc cga cat
act ttt 624His Lys Ala His Phe Ala Thr Trp Asp Ala Leu Ala Arg His
Thr Phe 195 200 205 ttt tct gcc gaa gca att atc acc aac tca acg ttg
aga ata cac gtt 672Phe Ser Ala Glu Ala Ile Ile Thr Asn Ser Thr Leu
Arg Ile His Val 210 215 220 ccc ctt ttt ggg tcg gta tgg cca att cga
tac tgg gcc acc ggt tcg 720Pro Leu Phe Gly Ser Val Trp Pro Ile Arg
Tyr Trp Ala Thr Gly Ser 225 230 235 240 gtg ctt ctc aca agc gac tcg
ggt cgt gtg gaa gta aat att ggt gta 768Val Leu Leu Thr Ser Asp Ser
Gly Arg Val Glu Val Asn Ile Gly Val 245 250 255 gga ttt atg agc tcg
ctc att tct tta tcc tct gga cta ccg ata gaa 816Gly Phe Met Ser Ser
Leu Ile Ser Leu Ser Ser Gly Leu Pro Ile Glu 260 265 270 tta att gtt
gta cca cat aca gta aaa ctg aac gcg gtt aca agc gac 864Leu Ile Val
Val Pro His Thr Val Lys Leu Asn Ala Val Thr Ser Asp 275 280 285 acc
aca tgg ttc cag cta aat cca ccg ggt ccg gat ccg ggg cca tct 912Thr
Thr Trp Phe Gln Leu Asn Pro Pro Gly Pro Asp Pro Gly Pro Ser 290 295
300 tat cga gtt tat tta ctt gga cgt ggg ttg gat atg aat ttt tca
aag
960Tyr Arg Val Tyr Leu Leu Gly Arg Gly Leu Asp Met Asn Phe Ser Lys
305 310 315 320 cat gct acg gtc gat ata tgc gca tat ccc gaa gag agt
ttg gat tac 1008His Ala Thr Val Asp Ile Cys Ala Tyr Pro Glu Glu Ser
Leu Asp Tyr 325 330 335 cgc tat cat tta tcc atg gcc cac acg gag gct
ctg cgg atg aca acg 1056Arg Tyr His Leu Ser Met Ala His Thr Glu Ala
Leu Arg Met Thr Thr 340 345 350 aag gcg gat caa cat gac ata aac gag
gaa agc tat tac cat atc gcc 1104Lys Ala Asp Gln His Asp Ile Asn Glu
Glu Ser Tyr Tyr His Ile Ala 355 360 365 gca aga ata gcc aca tca att
ttt gcg ttg tcg gaa atg ggc cgt acc 1152Ala Arg Ile Ala Thr Ser Ile
Phe Ala Leu Ser Glu Met Gly Arg Thr 370 375 380 aca gaa tat ttt ctg
tta gat gag atc gta gat gtt cag tat caa tta 1200Thr Glu Tyr Phe Leu
Leu Asp Glu Ile Val Asp Val Gln Tyr Gln Leu 385 390 395 400 aaa ttc
ctt aat tac att tta atg cgg ata gga gca gga gct cat ccc 1248Lys Phe
Leu Asn Tyr Ile Leu Met Arg Ile Gly Ala Gly Ala His Pro 405 410 415
aac act ata tcc gga acc tcg gat ctg atc ttt gcc gat cca tcg cag
1296Asn Thr Ile Ser Gly Thr Ser Asp Leu Ile Phe Ala Asp Pro Ser Gln
420 425 430 ctt cat gac gaa ctt tca ctt ctt ttt ggt cag gta aaa ccc
gca aat 1344Leu His Asp Glu Leu Ser Leu Leu Phe Gly Gln Val Lys Pro
Ala Asn 435 440 445 gtc gat tat ttt att tca tat gat gaa gcc cgt gat
caa cta aag acc 1392Val Asp Tyr Phe Ile Ser Tyr Asp Glu Ala Arg Asp
Gln Leu Lys Thr 450 455 460 gca tac gcg ctt tcc cgt ggt caa gac cat
gtg aat gca ctt tct ctc 1440Ala Tyr Ala Leu Ser Arg Gly Gln Asp His
Val Asn Ala Leu Ser Leu 465 470 475 480 gcc agg cgt gtt ata atg agc
ata tac aag ggg ctg ctt gtg aag caa 1488Ala Arg Arg Val Ile Met Ser
Ile Tyr Lys Gly Leu Leu Val Lys Gln 485 490 495 aat tta aat gct aca
gag agg cag gct tta ttt ttt gcc tca atg att 1536Asn Leu Asn Ala Thr
Glu Arg Gln Ala Leu Phe Phe Ala Ser Met Ile 500 505 510 tta tta aat
ttc cgc gaa gga cta gaa aat tca tct cgg gta tta gac 1584Leu Leu Asn
Phe Arg Glu Gly Leu Glu Asn Ser Ser Arg Val Leu Asp 515 520 525 ggt
cgc aca act ttg ctt tta atg aca tcc atg tgt acg gca gct cac 1632Gly
Arg Thr Thr Leu Leu Leu Met Thr Ser Met Cys Thr Ala Ala His 530 535
540 gcc acg caa gca gca ctt aac ata caa gaa ggc ctg gca tac tta aat
1680Ala Thr Gln Ala Ala Leu Asn Ile Gln Glu Gly Leu Ala Tyr Leu Asn
545 550 555 560 cct tca aaa cac atg ttt aca ata cca aac gta tac agt
cct tgt atg 1728Pro Ser Lys His Met Phe Thr Ile Pro Asn Val Tyr Ser
Pro Cys Met 565 570 575 ggt tcc ctt cgt aca gac ctc acg gaa gag att
cat gtt atg aat ctc 1776Gly Ser Leu Arg Thr Asp Leu Thr Glu Glu Ile
His Val Met Asn Leu 580 585 590 ctg tcg gca ata cca aca cgc cca gga
ctt aac gag gta ttg cat acc 1824Leu Ser Ala Ile Pro Thr Arg Pro Gly
Leu Asn Glu Val Leu His Thr 595 600 605 caa cta gac gaa tct gaa ata
ttc gac gcg gca ttt aaa acc atg atg 1872Gln Leu Asp Glu Ser Glu Ile
Phe Asp Ala Ala Phe Lys Thr Met Met 610 615 620 att ttt acc aca tgg
act gcc aaa gat ttg cat ata ctc cac acc cat 1920Ile Phe Thr Thr Trp
Thr Ala Lys Asp Leu His Ile Leu His Thr His 625 630 635 640 gta cca
gaa gta ttt acg tgt caa gat gca gcc gcg cgt aac gga gaa 1968Val Pro
Glu Val Phe Thr Cys Gln Asp Ala Ala Ala Arg Asn Gly Glu 645 650 655
tat gtg ctc att ctt cca gct gtc cag gga cac agt tat gtg att aca
2016Tyr Val Leu Ile Leu Pro Ala Val Gln Gly His Ser Tyr Val Ile Thr
660 665 670 cga aac aaa cct caa agg ggt ttg gta tat tcc ctg gca gat
gtg gat 2064Arg Asn Lys Pro Gln Arg Gly Leu Val Tyr Ser Leu Ala Asp
Val Asp 675 680 685 gta tat aac ccc ata tcc gtt gtt tat tta agc aag
gat act tgc gtg 2112Val Tyr Asn Pro Ile Ser Val Val Tyr Leu Ser Lys
Asp Thr Cys Val 690 695 700 tct gaa cat ggt gtc ata gag acg gtc gca
ctg ccc cat ccg gac aat 2160Ser Glu His Gly Val Ile Glu Thr Val Ala
Leu Pro His Pro Asp Asn 705 710 715 720 tta aaa gaa tgt ttg tat tgc
gga agt gtt ttt ctt agg tat cta acc 2208Leu Lys Glu Cys Leu Tyr Cys
Gly Ser Val Phe Leu Arg Tyr Leu Thr 725 730 735 acg ggg gcg att atg
gat ata att att att gac agc aaa gat aca gaa 2256Thr Gly Ala Ile Met
Asp Ile Ile Ile Ile Asp Ser Lys Asp Thr Glu 740 745 750 cga caa cta
gcc gct atg gga aac tcc aca att cca ccc ttc aat cca 2304Arg Gln Leu
Ala Ala Met Gly Asn Ser Thr Ile Pro Pro Phe Asn Pro 755 760 765 gac
atg cac ggg gat gac tct aag gct gtg ttg ttg ttt cca aac gga 2352Asp
Met His Gly Asp Asp Ser Lys Ala Val Leu Leu Phe Pro Asn Gly 770 775
780 act gtg gta acg ctt cta gga ttc gaa cga cga caa gcc ata cga atg
2400Thr Val Val Thr Leu Leu Gly Phe Glu Arg Arg Gln Ala Ile Arg Met
785 790 795 800 tcg gga caa tac ctt ggg gcc tct tta gga ggg gcg ttt
ctg gcg gta 2448Ser Gly Gln Tyr Leu Gly Ala Ser Leu Gly Gly Ala Phe
Leu Ala Val 805 810 815 gtg ggg ttt ggt att atc gga tgg atg tta tgt
gga aat tcc cgc ctt 2496Val Gly Phe Gly Ile Ile Gly Trp Met Leu Cys
Gly Asn Ser Arg Leu 820 825 830 cga gaa tat aat aaa ata cct ctg aca
taa 2526Arg Glu Tyr Asn Lys Ile Pro Leu Thr 835 840
20841PRTVaricella zoster 20Met Phe Ala Leu Val Leu Ala Val Val Ile
Leu Pro Leu Trp Thr Thr 1 5 10 15 Ala Asn Lys Ser Tyr Val Thr Pro
Thr Pro Ala Thr Arg Ser Ile Gly 20 25 30 His Met Ser Ala Leu Leu
Arg Glu Tyr Ser Asp Arg Asn Met Ser Leu 35 40 45 Lys Leu Glu Ala
Phe Tyr Pro Thr Gly Phe Asp Glu Glu Leu Ile Lys 50 55 60 Ser Leu
His Trp Gly Asn Asp Arg Lys His Val Phe Leu Val Ile Val 65 70 75 80
Lys Val Asn Pro Thr Thr His Glu Gly Asp Val Gly Leu Val Ile Phe 85
90 95 Pro Lys Tyr Leu Leu Ser Pro Tyr His Phe Lys Ala Glu His Arg
Ala 100 105 110 Pro Phe Pro Ala Gly Arg Phe Gly Phe Leu Ser His Pro
Val Thr Pro 115 120 125 Asp Val Ser Phe Phe Asp Ser Ser Phe Ala Pro
Tyr Leu Thr Thr Gln 130 135 140 His Leu Val Ala Phe Thr Thr Phe Pro
Pro Asn Pro Leu Val Trp His 145 150 155 160 Leu Glu Arg Ala Glu Thr
Ala Ala Thr Ala Glu Arg Pro Phe Gly Val 165 170 175 Ser Leu Leu Pro
Ala Arg Pro Thr Val Pro Lys Asn Thr Ile Leu Glu 180 185 190 His Lys
Ala His Phe Ala Thr Trp Asp Ala Leu Ala Arg His Thr Phe 195 200 205
Phe Ser Ala Glu Ala Ile Ile Thr Asn Ser Thr Leu Arg Ile His Val 210
215 220 Pro Leu Phe Gly Ser Val Trp Pro Ile Arg Tyr Trp Ala Thr Gly
Ser 225 230 235 240 Val Leu Leu Thr Ser Asp Ser Gly Arg Val Glu Val
Asn Ile Gly Val 245 250 255 Gly Phe Met Ser Ser Leu Ile Ser Leu Ser
Ser Gly Leu Pro Ile Glu 260 265 270 Leu Ile Val Val Pro His Thr Val
Lys Leu Asn Ala Val Thr Ser Asp 275 280 285 Thr Thr Trp Phe Gln Leu
Asn Pro Pro Gly Pro Asp Pro Gly Pro Ser 290 295 300 Tyr Arg Val Tyr
Leu Leu Gly Arg Gly Leu Asp Met Asn Phe Ser Lys 305 310 315 320 His
Ala Thr Val Asp Ile Cys Ala Tyr Pro Glu Glu Ser Leu Asp Tyr 325 330
335 Arg Tyr His Leu Ser Met Ala His Thr Glu Ala Leu Arg Met Thr Thr
340 345 350 Lys Ala Asp Gln His Asp Ile Asn Glu Glu Ser Tyr Tyr His
Ile Ala 355 360 365 Ala Arg Ile Ala Thr Ser Ile Phe Ala Leu Ser Glu
Met Gly Arg Thr 370 375 380 Thr Glu Tyr Phe Leu Leu Asp Glu Ile Val
Asp Val Gln Tyr Gln Leu 385 390 395 400 Lys Phe Leu Asn Tyr Ile Leu
Met Arg Ile Gly Ala Gly Ala His Pro 405 410 415 Asn Thr Ile Ser Gly
Thr Ser Asp Leu Ile Phe Ala Asp Pro Ser Gln 420 425 430 Leu His Asp
Glu Leu Ser Leu Leu Phe Gly Gln Val Lys Pro Ala Asn 435 440 445 Val
Asp Tyr Phe Ile Ser Tyr Asp Glu Ala Arg Asp Gln Leu Lys Thr 450 455
460 Ala Tyr Ala Leu Ser Arg Gly Gln Asp His Val Asn Ala Leu Ser Leu
465 470 475 480 Ala Arg Arg Val Ile Met Ser Ile Tyr Lys Gly Leu Leu
Val Lys Gln 485 490 495 Asn Leu Asn Ala Thr Glu Arg Gln Ala Leu Phe
Phe Ala Ser Met Ile 500 505 510 Leu Leu Asn Phe Arg Glu Gly Leu Glu
Asn Ser Ser Arg Val Leu Asp 515 520 525 Gly Arg Thr Thr Leu Leu Leu
Met Thr Ser Met Cys Thr Ala Ala His 530 535 540 Ala Thr Gln Ala Ala
Leu Asn Ile Gln Glu Gly Leu Ala Tyr Leu Asn 545 550 555 560 Pro Ser
Lys His Met Phe Thr Ile Pro Asn Val Tyr Ser Pro Cys Met 565 570 575
Gly Ser Leu Arg Thr Asp Leu Thr Glu Glu Ile His Val Met Asn Leu 580
585 590 Leu Ser Ala Ile Pro Thr Arg Pro Gly Leu Asn Glu Val Leu His
Thr 595 600 605 Gln Leu Asp Glu Ser Glu Ile Phe Asp Ala Ala Phe Lys
Thr Met Met 610 615 620 Ile Phe Thr Thr Trp Thr Ala Lys Asp Leu His
Ile Leu His Thr His 625 630 635 640 Val Pro Glu Val Phe Thr Cys Gln
Asp Ala Ala Ala Arg Asn Gly Glu 645 650 655 Tyr Val Leu Ile Leu Pro
Ala Val Gln Gly His Ser Tyr Val Ile Thr 660 665 670 Arg Asn Lys Pro
Gln Arg Gly Leu Val Tyr Ser Leu Ala Asp Val Asp 675 680 685 Val Tyr
Asn Pro Ile Ser Val Val Tyr Leu Ser Lys Asp Thr Cys Val 690 695 700
Ser Glu His Gly Val Ile Glu Thr Val Ala Leu Pro His Pro Asp Asn 705
710 715 720 Leu Lys Glu Cys Leu Tyr Cys Gly Ser Val Phe Leu Arg Tyr
Leu Thr 725 730 735 Thr Gly Ala Ile Met Asp Ile Ile Ile Ile Asp Ser
Lys Asp Thr Glu 740 745 750 Arg Gln Leu Ala Ala Met Gly Asn Ser Thr
Ile Pro Pro Phe Asn Pro 755 760 765 Asp Met His Gly Asp Asp Ser Lys
Ala Val Leu Leu Phe Pro Asn Gly 770 775 780 Thr Val Val Thr Leu Leu
Gly Phe Glu Arg Arg Gln Ala Ile Arg Met 785 790 795 800 Ser Gly Gln
Tyr Leu Gly Ala Ser Leu Gly Gly Ala Phe Leu Ala Val 805 810 815 Val
Gly Phe Gly Ile Ile Gly Trp Met Leu Cys Gly Asn Ser Arg Leu 820 825
830 Arg Glu Tyr Asn Lys Ile Pro Leu Thr 835 840
212526DNAArtificialdeoptimized VZV gH sequence 21atgtttgctc
tagtcctagc tgtcgtcatc ctacctctat ggactactgc taataaaagt 60tacgtcactc
ctactcctgc tactaggagt atcggccata tgagtgctct actaagggaa
120tatagtgaca ggaatatgag tctaaaacta gaagcttttt atcctactgg
cttcgatgaa 180gaactaatca aaagtctaca ctggggcaat gataggaaac
acgtcttcct agtcatcgtc 240aaggtcaacc ctactactca cgaaggcgac
gtcggcctag tcatctttcc taaataccta 300ctaagtcctt accatttcaa
agctgaacat agggctcctt ttcctgctgg caggtttggc 360tttctaagtc
accctgtcac tcctgacgtc agtttctttg acagtagttt tgctccttat
420ctaactactc aacatctagt cgcttttact actttccctc ctaaccctct
agtctggcat 480ctagaaaggg ctgagactgc tgctactgct gaaaggcctt
ttggcgtcag tctactacct 540gctaggccta ctgtccctaa gaatactatc
ctagaacata aagctcattt tgctacttgg 600gatgctctag ctaggcatac
tttttttagt gctgaagcta tcatcactaa cagtactcta 660aggatccacg
tccctctatt tggcagtgtc tggcctatca ggtactgggc tactggcagt
720gtcctactaa ctagtgacag tggcagggtc gaagtcaata tcggcgtcgg
ctttatgagt 780agtctaatca gtctaagtag tggcctacct atcgaactaa
tcgtcgtccc tcatactgtc 840aaactaaacg ctgtcactag tgacactact
tggttccagc taaatcctcc tggccctgat 900cctggcccta gttatagggt
ctatctacta ggcaggggcc tagatatgaa ttttagtaag 960catgctactg
tcgatatctg cgcttatcct gaagagagtc tagattacag gtatcatcta
1020agtatggctc acactgaggc tctaaggatg actactaagg ctgatcaaca
tgacatcaac 1080gaggaaagtt attaccatat cgctgctagg atcgctacta
gtatctttgc tctaagtgaa 1140atgggcagga ctactgaata ttttctacta
gatgagatcg tcgatgtcca gtatcaacta 1200aaattcctaa attacatcct
aatgaggatc ggcgctggcg ctcatcctaa cactatcagt 1260ggcactagtg
atctaatctt tgctgatcct agtcagctac atgacgaact aagtctacta
1320tttggccagg tcaaacctgc taatgtcgat tattttatca gttatgatga
agctagggat 1380caactaaaga ctgcttacgc tctaagtagg ggccaagacc
atgtcaatgc tctaagtcta 1440gctaggaggg tcatcatgag tatctacaag
ggcctactag tcaagcaaaa tctaaatgct 1500actgagaggc aggctctatt
ttttgctagt atgatcctac taaatttcag ggaaggccta 1560gaaaatagta
gtagggtcct agacggcagg actactctac tactaatgac tagtatgtgt
1620actgctgctc acgctactca agctgctcta aacatccaag aaggcctagc
ttacctaaat 1680cctagtaaac acatgtttac tatccctaac gtctacagtc
cttgtatggg cagtctaagg 1740actgacctaa ctgaagagat ccatgtcatg
aatctactaa gtgctatccc tactaggcct 1800ggcctaaacg aggtcctaca
tactcaacta gacgaaagtg aaatcttcga cgctgctttt 1860aaaactatga
tgatctttac tacttggact gctaaagatc tacatatcct acacactcat
1920gtccctgaag tctttacttg tcaagatgct gctgctagga acggcgaata
tgtcctaatc 1980ctacctgctg tccagggcca cagttatgtc atcactagga
acaaacctca aaggggccta 2040gtctatagtc tagctgatgt cgatgtctat
aaccctatca gtgtcgtcta tctaagtaag 2100gatacttgcg tcagtgaaca
tggcgtcatc gagactgtcg ctctacctca tcctgacaat 2160ctaaaagaat
gtctatattg cggcagtgtc tttctaaggt atctaactac tggcgctatc
2220atggatatca tcatcatcga cagtaaagat actgaaaggc aactagctgc
tatgggcaac 2280agtactatcc ctcctttcaa tcctgacatg cacggcgatg
acagtaaggc tgtcctacta 2340tttcctaacg gcactgtcgt cactctacta
ggcttcgaaa ggaggcaagc tatcaggatg 2400agtggccaat acctaggcgc
tagtctaggc ggcgcttttc tagctgtcgt cggctttggc 2460atcatcggct
ggatgctatg tggcaatagt aggctaaggg aatataataa aatccctcta 2520acttaa
2526221872DNAVaricella zosterCDS(1)..(1872) 22atg ggg aca gtt aat
aaa cct gtg gtg ggg gta ttg atg ggg ttc gga 48Met Gly Thr Val Asn
Lys Pro Val Val Gly Val Leu Met Gly Phe Gly 1 5 10 15 att atc acg
gga acg ttg cgt ata acg aat ccg gtc aga gca tcc gtc 96Ile Ile Thr
Gly Thr Leu Arg Ile Thr Asn Pro Val Arg Ala Ser Val 20 25 30 ttg
cga tac gat gat ttt cac atc gat gaa gac aaa ctg gat aca aac 144Leu
Arg Tyr Asp Asp Phe His Ile Asp Glu Asp Lys Leu Asp Thr Asn 35 40
45 tcc gta tat gag cct tac tac cat tca gat cat gcg gag tct tca tgg
192Ser Val Tyr Glu Pro Tyr Tyr His Ser Asp His Ala Glu Ser Ser Trp
50 55 60 gta aat cgg gga gag tct tcg cga aaa gcg tac gat cat aac
tca cct 240Val Asn Arg Gly Glu Ser Ser Arg Lys Ala Tyr Asp His Asn
Ser
Pro 65 70 75 80 tat ata tgg cca cgt aat gat tat gat gga ttt tta gag
aac gca cac 288Tyr Ile Trp Pro Arg Asn Asp Tyr Asp Gly Phe Leu Glu
Asn Ala His 85 90 95 gaa cac cat ggg gtg tat aat cag ggc cgt ggt
atc gat agc ggg gaa 336Glu His His Gly Val Tyr Asn Gln Gly Arg Gly
Ile Asp Ser Gly Glu 100 105 110 cgg tta atg caa ccc aca caa atg tct
gca cag gag gat ctt ggg gac 384Arg Leu Met Gln Pro Thr Gln Met Ser
Ala Gln Glu Asp Leu Gly Asp 115 120 125 gat acg ggc atc cac gtt atc
cct acg tta aac ggc gat gac aga cat 432Asp Thr Gly Ile His Val Ile
Pro Thr Leu Asn Gly Asp Asp Arg His 130 135 140 aaa att gta aat gtg
gac caa cgt caa tac ggt gac gtg ttt aaa gga 480Lys Ile Val Asn Val
Asp Gln Arg Gln Tyr Gly Asp Val Phe Lys Gly 145 150 155 160 gat ctt
aat cca aaa ccc caa ggc caa aga ctc att gag gtg tca gtg 528Asp Leu
Asn Pro Lys Pro Gln Gly Gln Arg Leu Ile Glu Val Ser Val 165 170 175
gaa gaa aat cac ccg ttt act tta cgc gca ccg att cag cgg att tat
576Glu Glu Asn His Pro Phe Thr Leu Arg Ala Pro Ile Gln Arg Ile Tyr
180 185 190 gga gtc cgg tac acc gag act tgg agc ttt ttg ccg tca tta
acc tgt 624Gly Val Arg Tyr Thr Glu Thr Trp Ser Phe Leu Pro Ser Leu
Thr Cys 195 200 205 acg gga gac gca gcg ccc gcc atc cag cat ata tgt
tta aaa cat aca 672Thr Gly Asp Ala Ala Pro Ala Ile Gln His Ile Cys
Leu Lys His Thr 210 215 220 aca tgc ttt caa gac gtg gtg gtg gat gtg
gat tgc gcg gaa aat act 720Thr Cys Phe Gln Asp Val Val Val Asp Val
Asp Cys Ala Glu Asn Thr 225 230 235 240 aaa gag gat cag ttg gcc gaa
atc agt tac cgt ttt caa ggt aag aag 768Lys Glu Asp Gln Leu Ala Glu
Ile Ser Tyr Arg Phe Gln Gly Lys Lys 245 250 255 gaa gcg gac caa ccg
tgg att gtt gta aac acg agc aca ctg ttt gat 816Glu Ala Asp Gln Pro
Trp Ile Val Val Asn Thr Ser Thr Leu Phe Asp 260 265 270 gaa ctc gaa
tta gac ccc ccc gag att gaa ccg ggt gtc ttg aaa gta 864Glu Leu Glu
Leu Asp Pro Pro Glu Ile Glu Pro Gly Val Leu Lys Val 275 280 285 ctt
cgg aca gaa aaa caa tac ttg ggt gtg tac att tgg aac atg cgc 912Leu
Arg Thr Glu Lys Gln Tyr Leu Gly Val Tyr Ile Trp Asn Met Arg 290 295
300 ggc tcc gat ggt acg tct acc tac gcc acg ttt ttg gtc acc tgg aaa
960Gly Ser Asp Gly Thr Ser Thr Tyr Ala Thr Phe Leu Val Thr Trp Lys
305 310 315 320 ggg gat gaa aaa aca aga aac cct acg ccc gca gta act
cct caa cca 1008Gly Asp Glu Lys Thr Arg Asn Pro Thr Pro Ala Val Thr
Pro Gln Pro 325 330 335 aga ggg gct gag ttt cat atg tgg aat tac cac
tcg cat gta ttt tca 1056Arg Gly Ala Glu Phe His Met Trp Asn Tyr His
Ser His Val Phe Ser 340 345 350 gtt ggt gat acg ttt agc ttg gca atg
cat ctt cag tat aag ata cat 1104Val Gly Asp Thr Phe Ser Leu Ala Met
His Leu Gln Tyr Lys Ile His 355 360 365 gaa gcg cca ttt gat ttg ctg
tta gag tgg ttg tat gtc ccc atc gat 1152Glu Ala Pro Phe Asp Leu Leu
Leu Glu Trp Leu Tyr Val Pro Ile Asp 370 375 380 cct aca tgt caa cca
atg cgg tta tat tct acg tgt ttg tat cat ccc 1200Pro Thr Cys Gln Pro
Met Arg Leu Tyr Ser Thr Cys Leu Tyr His Pro 385 390 395 400 aac gca
ccc caa tgc ctc tct cat atg aat tcc ggt tgt aca ttt acc 1248Asn Ala
Pro Gln Cys Leu Ser His Met Asn Ser Gly Cys Thr Phe Thr 405 410 415
tcg cca cat tta gcc cag cgt gtt gca agc aca gtg tat caa aat tgt
1296Ser Pro His Leu Ala Gln Arg Val Ala Ser Thr Val Tyr Gln Asn Cys
420 425 430 gaa cat gca gat aac tac acc gca tat tgt ctg gga ata tct
cat atg 1344Glu His Ala Asp Asn Tyr Thr Ala Tyr Cys Leu Gly Ile Ser
His Met 435 440 445 gag cct agc ttt ggt cta atc tta cac gac ggg ggc
acc acg tta aag 1392Glu Pro Ser Phe Gly Leu Ile Leu His Asp Gly Gly
Thr Thr Leu Lys 450 455 460 ttt gta gat aca ccc gag agt ttg tcg gga
tta tac gtt ttt gtg gtg 1440Phe Val Asp Thr Pro Glu Ser Leu Ser Gly
Leu Tyr Val Phe Val Val 465 470 475 480 tat ttt aac ggg cat gtt gaa
gcc gta gca tac act gtt gta tcc aca 1488Tyr Phe Asn Gly His Val Glu
Ala Val Ala Tyr Thr Val Val Ser Thr 485 490 495 gta gat cat ttt gta
aac gca att gaa gag cgt gga ttt ccg cca acg 1536Val Asp His Phe Val
Asn Ala Ile Glu Glu Arg Gly Phe Pro Pro Thr 500 505 510 gcc ggt cag
cca ccg gcg act act aaa ccc aag gaa att acc ccc gta 1584Ala Gly Gln
Pro Pro Ala Thr Thr Lys Pro Lys Glu Ile Thr Pro Val 515 520 525 aac
ccc gga acg tca cca ctt cta cga tat gcc gca tgg acc gga ggg 1632Asn
Pro Gly Thr Ser Pro Leu Leu Arg Tyr Ala Ala Trp Thr Gly Gly 530 535
540 ctt gca gca gta gta ctt tta tgt ctc gta ata ttt tta atc tgt acg
1680Leu Ala Ala Val Val Leu Leu Cys Leu Val Ile Phe Leu Ile Cys Thr
545 550 555 560 gct aaa cga atg agg gtt aaa gcc tat agg gta gac aag
tcc ccg tat 1728Ala Lys Arg Met Arg Val Lys Ala Tyr Arg Val Asp Lys
Ser Pro Tyr 565 570 575 aac caa agc atg tat tac gct ggc ctt cca gtg
gac gat ttc gag gac 1776Asn Gln Ser Met Tyr Tyr Ala Gly Leu Pro Val
Asp Asp Phe Glu Asp 580 585 590 tcg gaa tct acg gat acg gaa gaa gag
ttt ggt aac gcg att gga ggg 1824Ser Glu Ser Thr Asp Thr Glu Glu Glu
Phe Gly Asn Ala Ile Gly Gly 595 600 605 agt cac ggg ggt tcg agt tac
acg gtg tat ata gat aag acc cgg tga 1872Ser His Gly Gly Ser Ser Tyr
Thr Val Tyr Ile Asp Lys Thr Arg 610 615 620 23623PRTVaricella
zoster 23Met Gly Thr Val Asn Lys Pro Val Val Gly Val Leu Met Gly
Phe Gly 1 5 10 15 Ile Ile Thr Gly Thr Leu Arg Ile Thr Asn Pro Val
Arg Ala Ser Val 20 25 30 Leu Arg Tyr Asp Asp Phe His Ile Asp Glu
Asp Lys Leu Asp Thr Asn 35 40 45 Ser Val Tyr Glu Pro Tyr Tyr His
Ser Asp His Ala Glu Ser Ser Trp 50 55 60 Val Asn Arg Gly Glu Ser
Ser Arg Lys Ala Tyr Asp His Asn Ser Pro 65 70 75 80 Tyr Ile Trp Pro
Arg Asn Asp Tyr Asp Gly Phe Leu Glu Asn Ala His 85 90 95 Glu His
His Gly Val Tyr Asn Gln Gly Arg Gly Ile Asp Ser Gly Glu 100 105 110
Arg Leu Met Gln Pro Thr Gln Met Ser Ala Gln Glu Asp Leu Gly Asp 115
120 125 Asp Thr Gly Ile His Val Ile Pro Thr Leu Asn Gly Asp Asp Arg
His 130 135 140 Lys Ile Val Asn Val Asp Gln Arg Gln Tyr Gly Asp Val
Phe Lys Gly 145 150 155 160 Asp Leu Asn Pro Lys Pro Gln Gly Gln Arg
Leu Ile Glu Val Ser Val 165 170 175 Glu Glu Asn His Pro Phe Thr Leu
Arg Ala Pro Ile Gln Arg Ile Tyr 180 185 190 Gly Val Arg Tyr Thr Glu
Thr Trp Ser Phe Leu Pro Ser Leu Thr Cys 195 200 205 Thr Gly Asp Ala
Ala Pro Ala Ile Gln His Ile Cys Leu Lys His Thr 210 215 220 Thr Cys
Phe Gln Asp Val Val Val Asp Val Asp Cys Ala Glu Asn Thr 225 230 235
240 Lys Glu Asp Gln Leu Ala Glu Ile Ser Tyr Arg Phe Gln Gly Lys Lys
245 250 255 Glu Ala Asp Gln Pro Trp Ile Val Val Asn Thr Ser Thr Leu
Phe Asp 260 265 270 Glu Leu Glu Leu Asp Pro Pro Glu Ile Glu Pro Gly
Val Leu Lys Val 275 280 285 Leu Arg Thr Glu Lys Gln Tyr Leu Gly Val
Tyr Ile Trp Asn Met Arg 290 295 300 Gly Ser Asp Gly Thr Ser Thr Tyr
Ala Thr Phe Leu Val Thr Trp Lys 305 310 315 320 Gly Asp Glu Lys Thr
Arg Asn Pro Thr Pro Ala Val Thr Pro Gln Pro 325 330 335 Arg Gly Ala
Glu Phe His Met Trp Asn Tyr His Ser His Val Phe Ser 340 345 350 Val
Gly Asp Thr Phe Ser Leu Ala Met His Leu Gln Tyr Lys Ile His 355 360
365 Glu Ala Pro Phe Asp Leu Leu Leu Glu Trp Leu Tyr Val Pro Ile Asp
370 375 380 Pro Thr Cys Gln Pro Met Arg Leu Tyr Ser Thr Cys Leu Tyr
His Pro 385 390 395 400 Asn Ala Pro Gln Cys Leu Ser His Met Asn Ser
Gly Cys Thr Phe Thr 405 410 415 Ser Pro His Leu Ala Gln Arg Val Ala
Ser Thr Val Tyr Gln Asn Cys 420 425 430 Glu His Ala Asp Asn Tyr Thr
Ala Tyr Cys Leu Gly Ile Ser His Met 435 440 445 Glu Pro Ser Phe Gly
Leu Ile Leu His Asp Gly Gly Thr Thr Leu Lys 450 455 460 Phe Val Asp
Thr Pro Glu Ser Leu Ser Gly Leu Tyr Val Phe Val Val 465 470 475 480
Tyr Phe Asn Gly His Val Glu Ala Val Ala Tyr Thr Val Val Ser Thr 485
490 495 Val Asp His Phe Val Asn Ala Ile Glu Glu Arg Gly Phe Pro Pro
Thr 500 505 510 Ala Gly Gln Pro Pro Ala Thr Thr Lys Pro Lys Glu Ile
Thr Pro Val 515 520 525 Asn Pro Gly Thr Ser Pro Leu Leu Arg Tyr Ala
Ala Trp Thr Gly Gly 530 535 540 Leu Ala Ala Val Val Leu Leu Cys Leu
Val Ile Phe Leu Ile Cys Thr 545 550 555 560 Ala Lys Arg Met Arg Val
Lys Ala Tyr Arg Val Asp Lys Ser Pro Tyr 565 570 575 Asn Gln Ser Met
Tyr Tyr Ala Gly Leu Pro Val Asp Asp Phe Glu Asp 580 585 590 Ser Glu
Ser Thr Asp Thr Glu Glu Glu Phe Gly Asn Ala Ile Gly Gly 595 600 605
Ser His Gly Gly Ser Ser Tyr Thr Val Tyr Ile Asp Lys Thr Arg 610 615
620 241872DNAArtificialdeoptimized VZV gE sequence 24atgggcactg
tcaataaacc tgtcgtcggc gtcctaatgg gcttcggcat catcactggc 60actctaagga
tcactaatcc tgtcagggct agtgtcctaa ggtacgatga ttttcacatc
120gatgaagaca aactagatac taacagtgtc tatgagcctt actaccatag
tgatcatgct 180gagagtagtt gggtcaatag gggcgagagt agtaggaaag
cttacgatca taacagtcct 240tatatctggc ctaggaatga ttatgatggc
tttctagaga acgctcacga acaccatggc 300gtctataatc agggcagggg
catcgatagt ggcgaaaggc taatgcaacc tactcaaatg 360agtgctcagg
aggatctagg cgacgatact ggcatccacg tcatccctac tctaaacggc
420gatgacaggc ataaaatcgt caatgtcgac caaaggcaat acggcgacgt
ctttaaaggc 480gatctaaatc ctaaacctca aggccaaagg ctaatcgagg
tcagtgtcga agaaaatcac 540ccttttactc taagggctcc tatccagagg
atctatggcg tcaggtacac tgagacttgg 600agttttctac ctagtctaac
ttgtactggc gacgctgctc ctgctatcca gcatatctgt 660ctaaaacata
ctacttgctt tcaagacgtc gtcgtcgatg tcgattgcgc tgaaaatact
720aaagaggatc agctagctga aatcagttac aggtttcaag gcaagaagga
agctgaccaa 780ccttggatcg tcgtcaacac tagtactcta tttgatgaac
tagaactaga ccctcctgag 840atcgaacctg gcgtcctaaa agtcctaagg
actgaaaaac aatacctagg cgtctacatc 900tggaacatga ggggcagtga
tggcactagt acttacgcta cttttctagt cacttggaaa 960ggcgatgaaa
aaactaggaa ccctactcct gctgtcactc ctcaacctag gggcgctgag
1020tttcatatgt ggaattacca cagtcatgtc tttagtgtcg gcgatacttt
tagtctagct 1080atgcatctac agtataagat ccatgaagct ccttttgatc
tactactaga gtggctatat 1140gtccctatcg atcctacttg tcaacctatg
aggctatata gtacttgtct atatcatcct 1200aacgctcctc aatgcctaag
tcatatgaat agtggctgta cttttactag tcctcatcta 1260gctcagaggg
tcgctagtac tgtctatcaa aattgtgaac atgctgataa ctacactgct
1320tattgtctag gcatcagtca tatggagcct agttttggcc taatcctaca
cgacggcggc 1380actactctaa agtttgtcga tactcctgag agtctaagtg
gcctatacgt ctttgtcgtc 1440tattttaacg gccatgtcga agctgtcgct
tacactgtcg tcagtactgt cgatcatttt 1500gtcaacgcta tcgaagagag
gggctttcct cctactgctg gccagcctcc tgctactact 1560aaacctaagg
aaatcactcc tgtcaaccct ggcactagtc ctctactaag gtatgctgct
1620tggactggcg gcctagctgc tgtcgtccta ctatgtctag tcatctttct
aatctgtact 1680gctaaaagga tgagggtcaa agcttatagg gtcgacaaga
gtccttataa ccaaagtatg 1740tattacgctg gcctacctgt cgacgatttc
gaggacagtg aaagtactga tactgaagaa 1800gagtttggca acgctatcgg
cggcagtcac ggcggcagta gttacactgt ctatatcgat 1860aagactaggt ga
1872252373DNAMeasles virus strain MoratenCDS(575)..(2236)
25agggccaagg aacatacaca cccaacagaa cccagacccc ggcccacggc gccgcgcccc
60caacccccga caaccagagg gagcccccaa ccaatcccgc cggctccccc ggtgcccaca
120ggcagggaca ccaacccccg aacagaccca gcacccaacc atcgacaatc
caagacgggg 180gggccccccc aaaaaaaggc ccccaggggc cgacagccag
caccgcgagg aagcccaccc 240accccacaca cgaccacggc aaccaaacca
gaacccagac caccctgggc caccagctcc 300cagactcggc catcaccccg
cagaaaggaa aggccacaac ccgcgcaccc cagccccgat 360ccggcgggga
gccacccaac ccgaaccagc acccaagagc gatccccgaa ggacccccga
420accgcaaagg acatcagtat cccacagcct ctccaagtcc cccggtctcc
tcctcttctc 480gaagggacca aaagatcaat ccaccacacc cgacgacact
caactcccca cccctaaagg 540agacaccggg aatcccagaa tcaagactca tcca atg
tcc atc atg ggt ctc aag 595 Met Ser Ile Met Gly Leu Lys 1 5 gtg aac
gtc tct gcc ata ttc atg gca gta ctg tta act ctc caa aca 643Val Asn
Val Ser Ala Ile Phe Met Ala Val Leu Leu Thr Leu Gln Thr 10 15 20
ccc acc ggt caa atc cat tgg ggc aat ctc tct aag ata ggg gtg gta
691Pro Thr Gly Gln Ile His Trp Gly Asn Leu Ser Lys Ile Gly Val Val
25 30 35 gga ata gga agt gca agc tac aaa gtt atg act cgt tcc agc
cat caa 739Gly Ile Gly Ser Ala Ser Tyr Lys Val Met Thr Arg Ser Ser
His Gln 40 45 50 55 tca tta gtc ata aaa tta atg ccc aat ata act ctc
ctc aat aac tgc 787Ser Leu Val Ile Lys Leu Met Pro Asn Ile Thr Leu
Leu Asn Asn Cys 60 65 70 acg agg gta gag att gca gaa tac agg aga
cta ctg aga aca gtt ttg 835Thr Arg Val Glu Ile Ala Glu Tyr Arg Arg
Leu Leu Arg Thr Val Leu 75 80 85 gaa cca att aga gat gca ctt aat
gca atg acc cag aat ata aga ccg 883Glu Pro Ile Arg Asp Ala Leu Asn
Ala Met Thr Gln Asn Ile Arg Pro 90 95 100 gtt cag agt gta gct tca
agt agg aga cac aag aga ttt gcg gga gta 931Val Gln Ser Val Ala Ser
Ser Arg Arg His Lys Arg Phe Ala Gly Val 105 110 115 gtc ctg gca ggt
gcg gcc cta ggc gtt gcc aca gct gct cag ata aca 979Val Leu Ala Gly
Ala Ala Leu Gly Val Ala Thr Ala Ala Gln Ile Thr 120 125 130 135 gcc
ggc att gca ctt cac cag tcc atg ctg aac tct caa gcc atc gac 1027Ala
Gly Ile Ala Leu His Gln Ser Met Leu Asn Ser Gln Ala Ile Asp 140 145
150 aat ctg aga gcg agc ctg gaa act act aat cag gca att gag aca atc
1075Asn Leu Arg Ala Ser Leu Glu Thr Thr Asn Gln Ala Ile Glu Thr Ile
155 160 165 aga caa gca ggg cag gag atg ata ttg gct gtt cag ggt gtc
caa gac 1123Arg Gln Ala Gly Gln Glu Met Ile Leu Ala Val Gln Gly Val
Gln Asp 170 175 180 tac atc aat aat gag ctg ata ccg tct atg aac caa
cta tct tgt gat 1171Tyr Ile Asn Asn Glu Leu Ile Pro Ser Met Asn
Gln
Leu Ser Cys Asp 185 190 195 tta atc ggc cag aag ctc ggg ctc aaa ttg
ctc aga tac tat aca gaa 1219Leu Ile Gly Gln Lys Leu Gly Leu Lys Leu
Leu Arg Tyr Tyr Thr Glu 200 205 210 215 atc ctg tca tta ttt ggc ccc
agt tta cgg gac ccc ata tct gcg gag 1267Ile Leu Ser Leu Phe Gly Pro
Ser Leu Arg Asp Pro Ile Ser Ala Glu 220 225 230 ata tct atc cag gct
ttg agc tat gcg ctt gga gga gac atc aat aag 1315Ile Ser Ile Gln Ala
Leu Ser Tyr Ala Leu Gly Gly Asp Ile Asn Lys 235 240 245 gtg tta gaa
aag ctc gga tac agt gga ggt gat tta ctg ggc atc tta 1363Val Leu Glu
Lys Leu Gly Tyr Ser Gly Gly Asp Leu Leu Gly Ile Leu 250 255 260 gag
agc gga gga ata aag gcc cgg ata act cac gtc gac aca gag tcc 1411Glu
Ser Gly Gly Ile Lys Ala Arg Ile Thr His Val Asp Thr Glu Ser 265 270
275 tac ttc att gtc ctc agt ata gcc tat ccg acg ctg tcc gag att aag
1459Tyr Phe Ile Val Leu Ser Ile Ala Tyr Pro Thr Leu Ser Glu Ile Lys
280 285 290 295 ggg gtg att gtc cac cgg cta gag ggg gtc tcg tac aac
ata ggc tct 1507Gly Val Ile Val His Arg Leu Glu Gly Val Ser Tyr Asn
Ile Gly Ser 300 305 310 caa gag tgg tat acc act gtg ccc aag tat gtt
gca acc caa ggg tac 1555Gln Glu Trp Tyr Thr Thr Val Pro Lys Tyr Val
Ala Thr Gln Gly Tyr 315 320 325 ctt atc tcg aat ttt gat gag tca tcg
tgt act ttc atg cca gag ggg 1603Leu Ile Ser Asn Phe Asp Glu Ser Ser
Cys Thr Phe Met Pro Glu Gly 330 335 340 act gtg tgc agc caa aat gcc
ttg tac ccg atg agt cct ctg ctc caa 1651Thr Val Cys Ser Gln Asn Ala
Leu Tyr Pro Met Ser Pro Leu Leu Gln 345 350 355 gaa tgc ctc cgg ggg
tac acc aag tcc tgt gct cgt aca ctc gta tcc 1699Glu Cys Leu Arg Gly
Tyr Thr Lys Ser Cys Ala Arg Thr Leu Val Ser 360 365 370 375 ggg tct
ttt ggg aac cgg ttc att tta tca caa ggg aac cta ata gcc 1747Gly Ser
Phe Gly Asn Arg Phe Ile Leu Ser Gln Gly Asn Leu Ile Ala 380 385 390
aat tgt gca tca atc ctt tgc aag tgt tac aca aca gga acg atc att
1795Asn Cys Ala Ser Ile Leu Cys Lys Cys Tyr Thr Thr Gly Thr Ile Ile
395 400 405 aat caa gac cct gac aag atc cta aca tac att gct gcc gat
cac tgc 1843Asn Gln Asp Pro Asp Lys Ile Leu Thr Tyr Ile Ala Ala Asp
His Cys 410 415 420 ccg gta gtc gag gtg aac ggc gtg acc atc caa gtc
ggg agc agg agg 1891Pro Val Val Glu Val Asn Gly Val Thr Ile Gln Val
Gly Ser Arg Arg 425 430 435 tat cca gac gct gtg tac ttg cac aga att
gac ctc ggt cct ccc ata 1939Tyr Pro Asp Ala Val Tyr Leu His Arg Ile
Asp Leu Gly Pro Pro Ile 440 445 450 455 tca ttg gag agg ttg gac gta
ggg aca aat ctg ggg aat gca att gct 1987Ser Leu Glu Arg Leu Asp Val
Gly Thr Asn Leu Gly Asn Ala Ile Ala 460 465 470 aag ttg gag gat gcc
aag gaa ttg ttg gag tca tcg gac cag ata ttg 2035Lys Leu Glu Asp Ala
Lys Glu Leu Leu Glu Ser Ser Asp Gln Ile Leu 475 480 485 agg agt atg
aaa ggt tta tcg agc act agc ata gtc tac atc ctg att 2083Arg Ser Met
Lys Gly Leu Ser Ser Thr Ser Ile Val Tyr Ile Leu Ile 490 495 500 gca
gtg tgt ctt gga ggg ttg ata ggg atc ccc gct tta ata tgt tgc 2131Ala
Val Cys Leu Gly Gly Leu Ile Gly Ile Pro Ala Leu Ile Cys Cys 505 510
515 tgc agg ggg cgt tgt aac aaa aag gga gaa caa gtt ggt atg tca aga
2179Cys Arg Gly Arg Cys Asn Lys Lys Gly Glu Gln Val Gly Met Ser Arg
520 525 530 535 cca ggc cta aag cct gat ctt acg gga aca tca aaa tcc
tat gta agg 2227Pro Gly Leu Lys Pro Asp Leu Thr Gly Thr Ser Lys Ser
Tyr Val Arg 540 545 550 tcg ctc tga tcctctacaa ctcttgaaac
acaaatgtcc cacaagtctc 2276Ser Leu ctcttcgtca tcaagcaacc accgcaccca
gcatcaagcc cacctgaaat tatctccggc 2336ttccctctgg ccgaacaata
tcggtagtta atcaaaa 237326553PRTMeasles virus strain Moraten 26Met
Ser Ile Met Gly Leu Lys Val Asn Val Ser Ala Ile Phe Met Ala 1 5 10
15 Val Leu Leu Thr Leu Gln Thr Pro Thr Gly Gln Ile His Trp Gly Asn
20 25 30 Leu Ser Lys Ile Gly Val Val Gly Ile Gly Ser Ala Ser Tyr
Lys Val 35 40 45 Met Thr Arg Ser Ser His Gln Ser Leu Val Ile Lys
Leu Met Pro Asn 50 55 60 Ile Thr Leu Leu Asn Asn Cys Thr Arg Val
Glu Ile Ala Glu Tyr Arg 65 70 75 80 Arg Leu Leu Arg Thr Val Leu Glu
Pro Ile Arg Asp Ala Leu Asn Ala 85 90 95 Met Thr Gln Asn Ile Arg
Pro Val Gln Ser Val Ala Ser Ser Arg Arg 100 105 110 His Lys Arg Phe
Ala Gly Val Val Leu Ala Gly Ala Ala Leu Gly Val 115 120 125 Ala Thr
Ala Ala Gln Ile Thr Ala Gly Ile Ala Leu His Gln Ser Met 130 135 140
Leu Asn Ser Gln Ala Ile Asp Asn Leu Arg Ala Ser Leu Glu Thr Thr 145
150 155 160 Asn Gln Ala Ile Glu Thr Ile Arg Gln Ala Gly Gln Glu Met
Ile Leu 165 170 175 Ala Val Gln Gly Val Gln Asp Tyr Ile Asn Asn Glu
Leu Ile Pro Ser 180 185 190 Met Asn Gln Leu Ser Cys Asp Leu Ile Gly
Gln Lys Leu Gly Leu Lys 195 200 205 Leu Leu Arg Tyr Tyr Thr Glu Ile
Leu Ser Leu Phe Gly Pro Ser Leu 210 215 220 Arg Asp Pro Ile Ser Ala
Glu Ile Ser Ile Gln Ala Leu Ser Tyr Ala 225 230 235 240 Leu Gly Gly
Asp Ile Asn Lys Val Leu Glu Lys Leu Gly Tyr Ser Gly 245 250 255 Gly
Asp Leu Leu Gly Ile Leu Glu Ser Gly Gly Ile Lys Ala Arg Ile 260 265
270 Thr His Val Asp Thr Glu Ser Tyr Phe Ile Val Leu Ser Ile Ala Tyr
275 280 285 Pro Thr Leu Ser Glu Ile Lys Gly Val Ile Val His Arg Leu
Glu Gly 290 295 300 Val Ser Tyr Asn Ile Gly Ser Gln Glu Trp Tyr Thr
Thr Val Pro Lys 305 310 315 320 Tyr Val Ala Thr Gln Gly Tyr Leu Ile
Ser Asn Phe Asp Glu Ser Ser 325 330 335 Cys Thr Phe Met Pro Glu Gly
Thr Val Cys Ser Gln Asn Ala Leu Tyr 340 345 350 Pro Met Ser Pro Leu
Leu Gln Glu Cys Leu Arg Gly Tyr Thr Lys Ser 355 360 365 Cys Ala Arg
Thr Leu Val Ser Gly Ser Phe Gly Asn Arg Phe Ile Leu 370 375 380 Ser
Gln Gly Asn Leu Ile Ala Asn Cys Ala Ser Ile Leu Cys Lys Cys 385 390
395 400 Tyr Thr Thr Gly Thr Ile Ile Asn Gln Asp Pro Asp Lys Ile Leu
Thr 405 410 415 Tyr Ile Ala Ala Asp His Cys Pro Val Val Glu Val Asn
Gly Val Thr 420 425 430 Ile Gln Val Gly Ser Arg Arg Tyr Pro Asp Ala
Val Tyr Leu His Arg 435 440 445 Ile Asp Leu Gly Pro Pro Ile Ser Leu
Glu Arg Leu Asp Val Gly Thr 450 455 460 Asn Leu Gly Asn Ala Ile Ala
Lys Leu Glu Asp Ala Lys Glu Leu Leu 465 470 475 480 Glu Ser Ser Asp
Gln Ile Leu Arg Ser Met Lys Gly Leu Ser Ser Thr 485 490 495 Ser Ile
Val Tyr Ile Leu Ile Ala Val Cys Leu Gly Gly Leu Ile Gly 500 505 510
Ile Pro Ala Leu Ile Cys Cys Cys Arg Gly Arg Cys Asn Lys Lys Gly 515
520 525 Glu Gln Val Gly Met Ser Arg Pro Gly Leu Lys Pro Asp Leu Thr
Gly 530 535 540 Thr Ser Lys Ser Tyr Val Arg Ser Leu 545 550
272373DNAArtificialdeoptimized measles F sequence 27agggccaagg
aacatacaca cccaacagaa cccagacccc ggcccacggc gccgcgcccc 60caacccccga
caaccagagg gagcccccaa ccaatcccgc cggctccccc ggtgcccaca
120ggcagggaca ccaacccccg aacagaccca gcacccaacc atcgacaatc
caagacgggg 180gggccccccc aaaaaaaggc ccccaggggc cgacagccag
caccgcgagg aagcccaccc 240accccacaca cgaccacggc aaccaaacca
gaacccagac caccctgggc caccagctcc 300cagactcggc catcaccccg
cagaaaggaa aggccacaac ccgcgcaccc cagccccgat 360ccggcgggga
gccacccaac ccgaaccagc acccaagagc gatccccgaa ggacccccga
420accgcaaagg acatcagtat cccacagcct ctccaagtcc cccggtctcc
tcctcttctc 480gaagggacca aaagatcaat ccaccacacc cgacgacact
caactcccca cccctaaagg 540agacaccggg aatcccagaa tcaagactca
tccaatgtcg atcatgggcc ttaaggtaaa 600cgtatcggcg atattcatgg
cggtacttct tacgcttcaa acgccgacgg gccaaatcca 660ttggggcaat
ctttcgaaga taggcgtagt aggcataggc tcggcgtcgt acaaagtaat
720gacgcgctcg tcgcatcaat cgcttgtaat aaaacttatg ccgaatataa
cgcttcttaa 780taactgcacg cgcgtagaga ttgcggaata ccgccgcctt
cttcgcacgg tacttgaacc 840gattcgcgat gcgcttaatg cgatgacgca
gaatatacgc ccggtacagt cggtagcgtc 900gtcgcgccgc cacaagcgct
ttgcgggcgt agtacttgcg ggcgcggcgc ttggcgtagc 960gacggcggcg
cagataacgg cgggcattgc gcttcaccag tcgatgctta actcgcaagc
1020gatcgacaat cttcgcgcgt cgcttgaaac gacgaatcag gcgattgaga
cgatccgcca 1080agcgggccag gagatgatac ttgcggtaca gggcgtacaa
gactacatca ataatgagct 1140tataccgtcg atgaaccaac tttcgtgtga
tcttatcggc cagaagcttg gccttaaact 1200tcttcgctac tatacggaaa
tcctttcgct ttttggcccg tcgcttcggg acccgatatc 1260ggcggagata
tcgatccagg cgctttcgta tgcgcttggc ggcgacatca ataaggtact
1320tgaaaagctt ggctactcgg gcggcgatct tcttggcatc cttgagtcgg
gcggcataaa 1380ggcgcgcata acgcacgtag acacggagtc gtacttcatt
gtactttcga tagcgtatcc 1440gacgctttcg gagattaagg gcgtaattgt
acaccgcctt gagggcgtat cgtacaacat 1500aggctcgcaa gagtggtata
cgacggtacc gaagtatgta gcgacgcaag gctaccttat 1560ctcgaatttt
gatgagtcgt cgtgtacgtt catgccggag ggcacggtat gctcgcaaaa
1620tgcgctttac ccgatgtcgc cgcttcttca agaatgcctt cgcggctaca
cgaagtcgtg 1680tgcgcgcacg cttgtatcgg gctcgtttgg caaccgcttc
attctttcgc aaggcaacct 1740tatagcgaat tgtgcgtcga tcctttgcaa
gtgttacacg acgggcacga tcattaatca 1800agacccggac aagatcctta
cgtacattgc ggcggatcac tgcccggtag tagaggtaaa 1860cggcgtaacg
atccaagtag gctcgcgccg ctatccggac gcggtatacc ttcaccgcat
1920tgaccttggc ccgccgatat cgcttgagcg ccttgacgta ggcacgaatc
ttggcaatgc 1980gattgcgaag cttgaggatg cgaaggaact tcttgagtcg
tcggaccaga tacttcgctc 2040gatgaaaggc ctttcgtcga cgtcgatagt
atacatcctt attgcggtat gtcttggcgg 2100ccttataggc atcccggcgc
ttatatgttg ctgccgcggc cgctgtaaca aaaagggcga 2160acaagtaggc
atgtcgcgcc cgggccttaa gccggatctt acgggcacgt cgaaatcgta
2220tgtacgctcg ctttgatcct ctacaactct tgaaacacaa atgtcccaca
agtctcctct 2280tcgtcatcaa gcaaccaccg cacccagcat caagcccacc
tgaaattatc tccggcttcc 2340ctctggccga acaatatcgg tagttaatca aaa
2373281958DNAMeasles virus strain MoratenCDS(21)..(1874)
28agggtgcaag atcatccaca atg tca cca caa cga gac cgg ata aat gcc ttc
53 Met Ser Pro Gln Arg Asp Arg Ile Asn Ala Phe 1 5 10 tac aaa gat
aac ccc cat ccc aag gga agt agg ata gtc att aac aga 101Tyr Lys Asp
Asn Pro His Pro Lys Gly Ser Arg Ile Val Ile Asn Arg 15 20 25 gaa
cat ctt atg att gat aga cct tat gtt ttg ctg gct gtt ctg ttt 149Glu
His Leu Met Ile Asp Arg Pro Tyr Val Leu Leu Ala Val Leu Phe 30 35
40 gtc atg ttt ctg agc ttg atc ggg ttg cta gcc att gca ggc att aga
197Val Met Phe Leu Ser Leu Ile Gly Leu Leu Ala Ile Ala Gly Ile Arg
45 50 55 ctt cat cgg gca gcc atc tac acc gca gag atc cat aaa agc
ctc agc 245Leu His Arg Ala Ala Ile Tyr Thr Ala Glu Ile His Lys Ser
Leu Ser 60 65 70 75 acc aat cta gat gta act aac tca atc gag cat cag
gtc aag gac gtg 293Thr Asn Leu Asp Val Thr Asn Ser Ile Glu His Gln
Val Lys Asp Val 80 85 90 ctg aca cca ctc ttc aaa atc atc ggt gat
gaa gtg ggc ctg agg aca 341Leu Thr Pro Leu Phe Lys Ile Ile Gly Asp
Glu Val Gly Leu Arg Thr 95 100 105 cct cag aga ttc act gac cta gtg
aaa tta atc tct gac aag att aaa 389Pro Gln Arg Phe Thr Asp Leu Val
Lys Leu Ile Ser Asp Lys Ile Lys 110 115 120 ttc ctt aat ccg gat agg
gag tac gac ttc aga gat ctc act tgg tgt 437Phe Leu Asn Pro Asp Arg
Glu Tyr Asp Phe Arg Asp Leu Thr Trp Cys 125 130 135 atc aac ccg cca
gag aga atc aaa ttg gat tat gat caa tac tgt gca 485Ile Asn Pro Pro
Glu Arg Ile Lys Leu Asp Tyr Asp Gln Tyr Cys Ala 140 145 150 155 gat
gtg gct gct gaa gag ctc atg aat gca ttg gtg aac tca act cta 533Asp
Val Ala Ala Glu Glu Leu Met Asn Ala Leu Val Asn Ser Thr Leu 160 165
170 ctg gag acc aga aca acc aat cag ttc cta gct gtc tca aag gga aac
581Leu Glu Thr Arg Thr Thr Asn Gln Phe Leu Ala Val Ser Lys Gly Asn
175 180 185 tgc tca ggg ccc act aca atc aga ggt caa ttc tca aac atg
tcg ctg 629Cys Ser Gly Pro Thr Thr Ile Arg Gly Gln Phe Ser Asn Met
Ser Leu 190 195 200 tcc ctg tta gac ttg tat tta ggt cga ggt tac aat
gtg tca tct ata 677Ser Leu Leu Asp Leu Tyr Leu Gly Arg Gly Tyr Asn
Val Ser Ser Ile 205 210 215 gtc act atg aca tcc cag gga atg tat ggg
gga act tac cta gtg gaa 725Val Thr Met Thr Ser Gln Gly Met Tyr Gly
Gly Thr Tyr Leu Val Glu 220 225 230 235 aag cct aat ctg agc agc aaa
agg tca gag ttg tca caa ctg agc atg 773Lys Pro Asn Leu Ser Ser Lys
Arg Ser Glu Leu Ser Gln Leu Ser Met 240 245 250 tac cga gtg ttt gaa
gta ggt gtt atc aga aat ccg ggt ttg ggg gct 821Tyr Arg Val Phe Glu
Val Gly Val Ile Arg Asn Pro Gly Leu Gly Ala 255 260 265 ccg gtg ttc
cat atg aca aac tat ctt gag caa cca gtc agt aat gat 869Pro Val Phe
His Met Thr Asn Tyr Leu Glu Gln Pro Val Ser Asn Asp 270 275 280 ctc
agc aac tgt atg gtg gct ttg ggg gag ctc aaa ctc gca gcc ctt 917Leu
Ser Asn Cys Met Val Ala Leu Gly Glu Leu Lys Leu Ala Ala Leu 285 290
295 tgt cac ggg gaa gat tct atc aca att ccc tat cag gga tca ggg aaa
965Cys His Gly Glu Asp Ser Ile Thr Ile Pro Tyr Gln Gly Ser Gly Lys
300 305 310 315 ggt gtc agc ttc cag ctc gtc aag cta ggt gtc tgg aaa
tcc cca acc 1013Gly Val Ser Phe Gln Leu Val Lys Leu Gly Val Trp Lys
Ser Pro Thr 320 325 330 gac atg caa tcc tgg gtc ccc tta tca acg gat
gat cca gtg ata gac 1061Asp Met Gln Ser Trp Val Pro Leu Ser Thr Asp
Asp Pro Val Ile Asp 335 340 345 agg ctt tac ctc tca tct cac aga ggt
gtt atc gct gac aat caa gca 1109Arg Leu Tyr Leu Ser Ser His Arg Gly
Val Ile Ala Asp Asn Gln Ala 350 355 360 aaa tgg gct gtc ccg aca aca
cga aca gat gac aag ttg cga atg gag 1157Lys Trp Ala Val Pro Thr Thr
Arg Thr Asp Asp Lys Leu Arg Met Glu 365 370 375 aca tgc ttc caa cag
gcg tgt aag ggt aaa atc caa gca ctc tgc gag 1205Thr Cys Phe Gln Gln
Ala Cys Lys Gly Lys Ile Gln Ala Leu Cys Glu 380 385 390 395 aat ccc
gag tgg gca cca ttg aag gat aac agg att cct tca tac ggg 1253Asn Pro
Glu Trp Ala Pro Leu Lys Asp Asn Arg Ile Pro Ser Tyr Gly 400 405 410
gtc ttg tct gtt gat ctg agt ctg aca gtt gag ctt aaa atc aaa att
1301Val Leu Ser Val Asp Leu Ser Leu Thr Val Glu Leu Lys Ile Lys Ile
415 420 425 gct tcg gga ttc ggg cca ttg atc aca cac ggt tca ggg atg
gac cta 1349Ala Ser Gly Phe Gly Pro Leu Ile Thr His Gly Ser Gly Met
Asp Leu 430 435 440 tac aaa tcc aac cac aac aat gtg tat tgg ctg act
atc ccg cca atg 1397Tyr Lys Ser Asn His Asn Asn Val Tyr Trp Leu Thr
Ile Pro Pro Met 445 450 455 aag aac cta gcc tta ggt gta atc aac aca
ttg gag tgg ata ccg aga 1445Lys Asn Leu Ala Leu Gly Val Ile Asn Thr
Leu Glu Trp Ile Pro Arg 460 465 470 475 ttc aag gtt agt ccc tac ctc
ttc act gtc cca att aag gaa gca ggc 1493Phe Lys Val Ser Pro Tyr Leu
Phe Thr Val Pro Ile Lys Glu Ala Gly 480 485 490 gaa gac tgc cat gcc
cca aca tac cta cct gcg gag gtg gat ggt gat 1541Glu Asp Cys His Ala
Pro Thr Tyr Leu Pro Ala Glu Val Asp Gly Asp 495 500 505 gtc aaa ctc
agt tcc aat ctg gtg att cta cct ggt caa gat ctc caa 1589Val Lys Leu
Ser Ser Asn Leu Val Ile Leu Pro Gly Gln Asp Leu Gln 510 515 520 tat
gtt ttg gca acc tac gat act tcc agg gtt gaa cat gct gtg gtt 1637Tyr
Val Leu Ala Thr Tyr Asp Thr Ser Arg Val Glu His Ala Val Val 525 530
535 tat tac gtt tac agc cca agc cgc tca ttt tct tac ttt tat cct ttt
1685Tyr Tyr Val Tyr Ser Pro Ser Arg Ser Phe Ser Tyr Phe Tyr Pro Phe
540 545 550 555 agg ttg cct ata aag ggg gtc ccc atc gaa tta caa gtg
gaa tgc ttc 1733Arg Leu Pro Ile Lys Gly Val Pro Ile Glu Leu Gln Val
Glu Cys Phe 560 565 570 aca tgg gac caa aaa ctc tgg tgc cgt cac ttc
tgt gtg ctt gcg gac 1781Thr Trp Asp Gln Lys Leu Trp Cys Arg His Phe
Cys Val Leu Ala Asp 575 580 585 tca gaa tct ggt gga cat atc act cac
tct ggg atg gtg ggc atg gga 1829Ser Glu Ser Gly Gly His Ile Thr His
Ser Gly Met Val Gly Met Gly 590 595 600 gtc agc tgc aca gtc acc cgg
gaa gat gga acc aat cgc aga tag 1874Val Ser Cys Thr Val Thr Arg Glu
Asp Gly Thr Asn Arg Arg 605 610 615 ggctgctagt gaaccaatca
catgatgtca cccagacatc aggcataccc actagtgtga 1934aatagacatc
agaattaaga aaaa 195829617PRTMeasles virus strain Moraten 29Met Ser
Pro Gln Arg Asp Arg Ile Asn Ala Phe Tyr Lys Asp Asn Pro 1 5 10 15
His Pro Lys Gly Ser Arg Ile Val Ile Asn Arg Glu His Leu Met Ile 20
25 30 Asp Arg Pro Tyr Val Leu Leu Ala Val Leu Phe Val Met Phe Leu
Ser 35 40 45 Leu Ile Gly Leu Leu Ala Ile Ala Gly Ile Arg Leu His
Arg Ala Ala 50 55 60 Ile Tyr Thr Ala Glu Ile His Lys Ser Leu Ser
Thr Asn Leu Asp Val 65 70 75 80 Thr Asn Ser Ile Glu His Gln Val Lys
Asp Val Leu Thr Pro Leu Phe 85 90 95 Lys Ile Ile Gly Asp Glu Val
Gly Leu Arg Thr Pro Gln Arg Phe Thr 100 105 110 Asp Leu Val Lys Leu
Ile Ser Asp Lys Ile Lys Phe Leu Asn Pro Asp 115 120 125 Arg Glu Tyr
Asp Phe Arg Asp Leu Thr Trp Cys Ile Asn Pro Pro Glu 130 135 140 Arg
Ile Lys Leu Asp Tyr Asp Gln Tyr Cys Ala Asp Val Ala Ala Glu 145 150
155 160 Glu Leu Met Asn Ala Leu Val Asn Ser Thr Leu Leu Glu Thr Arg
Thr 165 170 175 Thr Asn Gln Phe Leu Ala Val Ser Lys Gly Asn Cys Ser
Gly Pro Thr 180 185 190 Thr Ile Arg Gly Gln Phe Ser Asn Met Ser Leu
Ser Leu Leu Asp Leu 195 200 205 Tyr Leu Gly Arg Gly Tyr Asn Val Ser
Ser Ile Val Thr Met Thr Ser 210 215 220 Gln Gly Met Tyr Gly Gly Thr
Tyr Leu Val Glu Lys Pro Asn Leu Ser 225 230 235 240 Ser Lys Arg Ser
Glu Leu Ser Gln Leu Ser Met Tyr Arg Val Phe Glu 245 250 255 Val Gly
Val Ile Arg Asn Pro Gly Leu Gly Ala Pro Val Phe His Met 260 265 270
Thr Asn Tyr Leu Glu Gln Pro Val Ser Asn Asp Leu Ser Asn Cys Met 275
280 285 Val Ala Leu Gly Glu Leu Lys Leu Ala Ala Leu Cys His Gly Glu
Asp 290 295 300 Ser Ile Thr Ile Pro Tyr Gln Gly Ser Gly Lys Gly Val
Ser Phe Gln 305 310 315 320 Leu Val Lys Leu Gly Val Trp Lys Ser Pro
Thr Asp Met Gln Ser Trp 325 330 335 Val Pro Leu Ser Thr Asp Asp Pro
Val Ile Asp Arg Leu Tyr Leu Ser 340 345 350 Ser His Arg Gly Val Ile
Ala Asp Asn Gln Ala Lys Trp Ala Val Pro 355 360 365 Thr Thr Arg Thr
Asp Asp Lys Leu Arg Met Glu Thr Cys Phe Gln Gln 370 375 380 Ala Cys
Lys Gly Lys Ile Gln Ala Leu Cys Glu Asn Pro Glu Trp Ala 385 390 395
400 Pro Leu Lys Asp Asn Arg Ile Pro Ser Tyr Gly Val Leu Ser Val Asp
405 410 415 Leu Ser Leu Thr Val Glu Leu Lys Ile Lys Ile Ala Ser Gly
Phe Gly 420 425 430 Pro Leu Ile Thr His Gly Ser Gly Met Asp Leu Tyr
Lys Ser Asn His 435 440 445 Asn Asn Val Tyr Trp Leu Thr Ile Pro Pro
Met Lys Asn Leu Ala Leu 450 455 460 Gly Val Ile Asn Thr Leu Glu Trp
Ile Pro Arg Phe Lys Val Ser Pro 465 470 475 480 Tyr Leu Phe Thr Val
Pro Ile Lys Glu Ala Gly Glu Asp Cys His Ala 485 490 495 Pro Thr Tyr
Leu Pro Ala Glu Val Asp Gly Asp Val Lys Leu Ser Ser 500 505 510 Asn
Leu Val Ile Leu Pro Gly Gln Asp Leu Gln Tyr Val Leu Ala Thr 515 520
525 Tyr Asp Thr Ser Arg Val Glu His Ala Val Val Tyr Tyr Val Tyr Ser
530 535 540 Pro Ser Arg Ser Phe Ser Tyr Phe Tyr Pro Phe Arg Leu Pro
Ile Lys 545 550 555 560 Gly Val Pro Ile Glu Leu Gln Val Glu Cys Phe
Thr Trp Asp Gln Lys 565 570 575 Leu Trp Cys Arg His Phe Cys Val Leu
Ala Asp Ser Glu Ser Gly Gly 580 585 590 His Ile Thr His Ser Gly Met
Val Gly Met Gly Val Ser Cys Thr Val 595 600 605 Thr Arg Glu Asp Gly
Thr Asn Arg Arg 610 615 301958DNAArtificialdeoptimized measles H
sequence. 30agggtgcaag atcatccaca atgtcgccgc aacgcgaccg cataaatgcg
ttctacaaag 60ataacccgca tccgaagggc tcgcgcatag taattaaccg cgaacatctt
atgattgatc 120gcccgtatgt acttcttgcg gtactttttg taatgtttct
ttcgcttatc ggccttcttg 180cgattgcggg cattcgcctt catcgcgcgg
cgatctacac cgcggagatc cataaatcgc 240tctcgacgaa tcttgatgta
acgaactcga tcgagcatca ggtaaaggac gtacttacgc 300cgcttttcaa
aatcatcggc gatgaagtag gccttcgcac gccgcagcgc ttcacggacc
360ttgtaaaact tatctcggac aagattaaat tccttaatcc ggatcgcgag
tacgacttcc 420gcgatcttac gtggtgtatc aacccgccgg agcgcatcaa
acttgattat gatcaatact 480gtgcggatgt agcggcggaa gagcttatga
atgcgcttgt aaactcgacg cttcttgaga 540cgcgcacgac gaatcagttc
cttgcggtat cgaagggcaa ctgctcgggc ccgacgacga 600tccgcggcca
attctcgaac atgtcgcttt cgcttcttga cctttatctt ggccgcggct
660acaatgtatc gtcgatagta acgatgacgt cccagggcat gtatggcggc
acgtaccttg 720tagaaaagcc gaatctttcg tcgaaacgct cggagctttc
gcaactttcg atgtaccgcg 780tatttgaagt aggcgtaatc cgcaatccgg
gccttggcgc gccggtattc catatgacga 840actatcttga gcaaccggta
tcgaatgatc tttcgaactg tatggtagcg cttggcgagc 900ttaaacttgc
ggcgctttgt cacggcgaag attcgatcac gattccgtat cagggctcgg
960gcaaaggcgt atcgttccag cttgtaaagc ttggcgtatg gaaatcgccg
acggacatgc 1020aatcgtgggt accgctttcg acggatgatc cggtaataga
ccgcctttac ctttcgtcgc 1080accgcggcgt aatcgcggac aatcaagcga
aatgggcggt accgacgacg cgcacggatg 1140acaagcttcg catggagacg
tgcttccaac aggcgtgtaa gggcaaaatc caagcgcttt 1200gcgagaatcc
ggagtgggcg ccgcttaagg ataaccgcat tccgtcgtac ggcgtacttt
1260cggtagatct ttcgcttacg gtagagctta aaatcaaaat tgcgtcgggc
ttcggcccgc 1320ttatcacgca cggctcgggc atggaccttt acaaatcgaa
ccacaacaat gtatattggc 1380ttacgatccc gccgatgaag aaccttgcgc
ttggcgtaat caacacgctt gagtggatac 1440cgcgcttcaa ggtatcgccg
taccttttca cggtaccgat taaggaagcg ggcgaagact 1500gccatgcgcc
gacgtacctt ccggcggagg tagatggcga tgtaaaactt tcgtcgaatc
1560ttgtaattct tccgggccaa gatcttcaat atgtacttgc gacgtacgat
acgtcgcgcg 1620tagaacatgc ggtagtatat tacgtatact cgccgtcgcg
ctcgttttcg tacttttatc 1680cgtttcgcct tccgataaag ggcgtaccga
tcgaacttca agtagaatgc ttcacgtggg 1740accaaaaact ttggtgccgc
cacttctgtg tacttgcgga ctcggaatcg ggcggccata 1800tcacgcactc
gggcatggta ggcatgggcg tatcgtgcac ggtaacgcgc gaagatggca
1860cgaatcgccg ctagggctgc tagtgaacca atcacatgat gtcacccaga
catcaggcat 1920acccactagt gtgaaataga catcagaatt aagaaaaa
1958311903DNAHuman respiratory syncytial virusCDS(14)..(1738)
31ggggcaaata aca atg gag ttg cta atc ctc aaa gca aat gca att acc 49
Met Glu Leu Leu Ile Leu Lys Ala Asn Ala Ile Thr 1 5 10 aca atc ctc
act gca gtc aca ttt tgt ttt gct tct ggt caa aac atc 97Thr Ile Leu
Thr Ala Val Thr Phe Cys Phe Ala Ser Gly Gln Asn Ile 15 20 25 act
gaa gaa ttt tat caa tca aca tgc agt gca gtt agc aaa ggc tat 145Thr
Glu Glu Phe Tyr Gln Ser Thr Cys Ser Ala Val Ser Lys Gly Tyr 30 35
40 ctt agt gct ctg aga act ggt tgg tat acc agt gtt ata act ata gaa
193Leu Ser Ala Leu Arg Thr Gly Trp Tyr Thr Ser Val Ile Thr Ile Glu
45 50 55 60 tta agt aat atc aag gaa aat aag tgt aat gga aca gat gct
aag gta 241Leu Ser Asn Ile Lys Glu Asn Lys Cys Asn Gly Thr Asp Ala
Lys Val 65 70 75 aaa ttg ata aaa caa gaa tta gat aaa tat aaa aat
gct gta aca gaa 289Lys Leu Ile Lys Gln Glu Leu Asp Lys Tyr Lys Asn
Ala Val Thr Glu 80 85 90 ttg cag ttg ctc atg caa agc aca cca gca
aca aac aat cga gcc aga 337Leu Gln Leu Leu Met Gln Ser Thr Pro Ala
Thr Asn Asn Arg Ala Arg 95 100 105 aga gaa cta cca agg ttt atg aat
tat aca ctc aac aat gcc aaa aaa 385Arg Glu Leu Pro Arg Phe Met Asn
Tyr Thr Leu Asn Asn Ala Lys Lys 110 115 120 acc aat gta aca tta agc
aag aaa agg aaa aga aga ttt ctt ggt ttt 433Thr Asn Val Thr Leu Ser
Lys Lys Arg Lys Arg Arg Phe Leu Gly Phe 125 130 135 140 ttg tta ggt
gtt gga tct gca atc gcc agt ggc gtt gct gta tct aag 481Leu Leu Gly
Val Gly Ser Ala Ile Ala Ser Gly Val Ala Val Ser Lys 145 150 155 gtc
ctg cac cta gaa ggg gaa gtg aac aag atc aaa agt gct cta cta 529Val
Leu His Leu Glu Gly Glu Val Asn Lys Ile Lys Ser Ala Leu Leu 160 165
170 tcc aca aac aag gct gta gtc agc tta tca aat gga gtt agt gtc tta
577Ser Thr Asn Lys Ala Val Val Ser Leu Ser Asn Gly Val Ser Val Leu
175 180 185 acc agc aaa gtg tta gac ctc aaa aac tat ata gat aaa caa
ttg tta 625Thr Ser Lys Val Leu Asp Leu Lys Asn Tyr Ile Asp Lys Gln
Leu Leu 190 195 200 cct att gtg aac aag caa agc tgc agc ata tca aat
ata gca act gtg 673Pro Ile Val Asn Lys Gln Ser Cys Ser Ile Ser Asn
Ile Ala Thr Val 205 210 215 220 ata gag ttc caa caa aag aac aac aga
cta cta gag att acc agg gaa 721Ile Glu Phe Gln Gln Lys Asn Asn Arg
Leu Leu Glu Ile Thr Arg Glu 225 230 235 ttt agt gtt aat gca ggt gta
act aca cct gta agc act tac atg tta 769Phe Ser Val Asn Ala Gly Val
Thr Thr Pro Val Ser Thr Tyr Met Leu 240 245 250 act aat agt gaa tta
ttg tca tta atc aat gat atg cct ata aca aat 817Thr Asn Ser Glu Leu
Leu Ser Leu Ile Asn Asp Met Pro Ile Thr Asn 255 260 265 gat cag aaa
aag tta atg tcc aac aat gtt caa ata gtt aga cag caa 865Asp Gln Lys
Lys Leu Met Ser Asn Asn Val Gln Ile Val Arg Gln Gln 270 275 280 agt
tac tct atc atg tcc ata ata aaa gag gaa gtc tta gca tat gta 913Ser
Tyr Ser Ile Met Ser Ile Ile Lys Glu Glu Val Leu Ala Tyr Val 285 290
295 300 gta caa tta cca cta tat ggt gtt ata gat aca ccc tgt tgg aaa
cta 961Val Gln Leu Pro Leu Tyr Gly Val Ile Asp Thr Pro Cys Trp Lys
Leu 305 310 315 cac aca tcc cct cta tgt aca acc aac aca aaa gaa ggg
tcc aac atc 1009His Thr Ser Pro Leu Cys Thr Thr Asn Thr Lys Glu Gly
Ser Asn Ile 320 325 330 tgt tta aca aga act gac aga gga tgg tac tgt
gac aat gca gga tca 1057Cys Leu Thr Arg Thr Asp Arg Gly Trp Tyr Cys
Asp Asn Ala Gly Ser 335 340 345 gta tct ttc ttc cca caa gct gaa aca
tgt aaa gtt caa tca aat cga 1105Val Ser Phe Phe Pro Gln Ala Glu Thr
Cys Lys Val Gln Ser Asn Arg 350 355 360 gta ttt tgt gac aca atg aac
agt tta aca tta cca agt gaa gta aat 1153Val Phe Cys Asp Thr Met Asn
Ser Leu Thr Leu Pro Ser Glu Val Asn 365 370 375 380 ctc tgc aat gtt
gac ata ttc aac ccc aaa tat gat tgt aaa att atg 1201Leu Cys Asn Val
Asp Ile Phe Asn Pro Lys Tyr Asp Cys Lys Ile Met 385 390 395 act tca
aaa aca gat gta agc agc tcc gtt atc aca tct cta gga gcc 1249Thr Ser
Lys Thr Asp Val Ser Ser Ser Val Ile Thr Ser Leu Gly Ala 400 405 410
att gtg tca tgc tat ggc aaa act aaa tgt aca gca tcc aat aaa aat
1297Ile Val Ser Cys Tyr Gly Lys Thr Lys Cys Thr Ala Ser Asn Lys Asn
415 420 425 cgt gga atc ata aag aca ttt tct aac ggg tgc gat tat gta
tca aat 1345Arg Gly Ile Ile Lys Thr Phe Ser Asn Gly Cys Asp Tyr Val
Ser Asn 430 435 440 aaa ggg gtg gac act gtg tct gta ggt aac aca tta
tat tat gta aat 1393Lys Gly Val Asp Thr Val Ser Val Gly Asn Thr Leu
Tyr Tyr Val Asn 445 450 455 460 aag caa gaa ggt aaa agt ctc tat gta
aaa ggt gaa cca ata ata aat 1441Lys Gln Glu Gly Lys Ser Leu Tyr Val
Lys Gly Glu Pro Ile Ile Asn 465 470 475 ttc tat gac cca tta gta ttc
ccc tct gat gaa ttt gat gca tca ata 1489Phe Tyr Asp Pro Leu Val Phe
Pro Ser Asp Glu Phe Asp Ala Ser Ile 480 485 490 tct caa gtc aac gag
aag att aac cag agc cta gca ttt att cgt aaa 1537Ser Gln Val Asn Glu
Lys Ile Asn Gln Ser Leu Ala Phe Ile Arg Lys 495 500 505 tcc gat gaa
tta tta cat aat gta aat gct ggt aaa tcc acc ata aat 1585Ser Asp Glu
Leu Leu His Asn Val Asn Ala Gly Lys Ser Thr Ile Asn 510 515 520 atc
atg ata act act ata att ata gtg att ata gta ata ttg tta tca 1633Ile
Met Ile Thr Thr Ile Ile Ile Val Ile Ile Val Ile Leu Leu Ser 525 530
535 540 tta att gct gtt gga ctg ctc tta tac tgt aag gcc aga agc aca
cca 1681Leu Ile Ala Val Gly Leu Leu Leu Tyr Cys Lys Ala Arg Ser Thr
Pro 545 550 555 gtc aca cta agc aaa gat caa ctg agt ggt ata aat aat
att gca ttt 1729Val Thr Leu Ser Lys Asp Gln Leu Ser Gly Ile Asn Asn
Ile Ala Phe 560 565 570
agt aac taa ataaaaatag cacctaatca tgttcttaca atggtttact 1778Ser Asn
atctgctcat agacaaccca tctgtcattg gattttctta aaatctgaac ttcatcgaaa
1838ctctcatcta taaaccatct cacttacact atttaagtag attcctagtt
tatagttata 1898taaaa 190332574PRTHuman respiratory syncytial virus
32Met Glu Leu Leu Ile Leu Lys Ala Asn Ala Ile Thr Thr Ile Leu Thr 1
5 10 15 Ala Val Thr Phe Cys Phe Ala Ser Gly Gln Asn Ile Thr Glu Glu
Phe 20 25 30 Tyr Gln Ser Thr Cys Ser Ala Val Ser Lys Gly Tyr Leu
Ser Ala Leu 35 40 45 Arg Thr Gly Trp Tyr Thr Ser Val Ile Thr Ile
Glu Leu Ser Asn Ile 50 55 60 Lys Glu Asn Lys Cys Asn Gly Thr Asp
Ala Lys Val Lys Leu Ile Lys 65 70 75 80 Gln Glu Leu Asp Lys Tyr Lys
Asn Ala Val Thr Glu Leu Gln Leu Leu 85 90 95 Met Gln Ser Thr Pro
Ala Thr Asn Asn Arg Ala Arg Arg Glu Leu Pro 100 105 110 Arg Phe Met
Asn Tyr Thr Leu Asn Asn Ala Lys Lys Thr Asn Val Thr 115 120 125 Leu
Ser Lys Lys Arg Lys Arg Arg Phe Leu Gly Phe Leu Leu Gly Val 130 135
140 Gly Ser Ala Ile Ala Ser Gly Val Ala Val Ser Lys Val Leu His Leu
145 150 155 160 Glu Gly Glu Val Asn Lys Ile Lys Ser Ala Leu Leu Ser
Thr Asn Lys 165 170 175 Ala Val Val Ser Leu Ser Asn Gly Val Ser Val
Leu Thr Ser Lys Val 180 185 190 Leu Asp Leu Lys Asn Tyr Ile Asp Lys
Gln Leu Leu Pro Ile Val Asn 195 200 205 Lys Gln Ser Cys Ser Ile Ser
Asn Ile Ala Thr Val Ile Glu Phe Gln 210 215 220 Gln Lys Asn Asn Arg
Leu Leu Glu Ile Thr Arg Glu Phe Ser Val Asn 225 230 235 240 Ala Gly
Val Thr Thr Pro Val Ser Thr Tyr Met Leu Thr Asn Ser Glu 245 250 255
Leu Leu Ser Leu Ile Asn Asp Met Pro Ile Thr Asn Asp Gln Lys Lys 260
265 270 Leu Met Ser Asn Asn Val Gln Ile Val Arg Gln Gln Ser Tyr Ser
Ile 275 280 285 Met Ser Ile Ile Lys Glu Glu Val Leu Ala Tyr Val Val
Gln Leu Pro 290 295 300 Leu Tyr Gly Val Ile Asp Thr Pro Cys Trp Lys
Leu His Thr Ser Pro 305 310 315 320 Leu Cys Thr Thr Asn Thr Lys Glu
Gly Ser Asn Ile Cys Leu Thr Arg 325 330 335 Thr Asp Arg Gly Trp Tyr
Cys Asp Asn Ala Gly Ser Val Ser Phe Phe 340 345 350 Pro Gln Ala Glu
Thr Cys Lys Val Gln Ser Asn Arg Val Phe Cys Asp 355 360 365 Thr Met
Asn Ser Leu Thr Leu Pro Ser Glu Val Asn Leu Cys Asn Val 370 375 380
Asp Ile Phe Asn Pro Lys Tyr Asp Cys Lys Ile Met Thr Ser Lys Thr 385
390 395 400 Asp Val Ser Ser Ser Val Ile Thr Ser Leu Gly Ala Ile Val
Ser Cys 405 410 415 Tyr Gly Lys Thr Lys Cys Thr Ala Ser Asn Lys Asn
Arg Gly Ile Ile 420 425 430 Lys Thr Phe Ser Asn Gly Cys Asp Tyr Val
Ser Asn Lys Gly Val Asp 435 440 445 Thr Val Ser Val Gly Asn Thr Leu
Tyr Tyr Val Asn Lys Gln Glu Gly 450 455 460 Lys Ser Leu Tyr Val Lys
Gly Glu Pro Ile Ile Asn Phe Tyr Asp Pro 465 470 475 480 Leu Val Phe
Pro Ser Asp Glu Phe Asp Ala Ser Ile Ser Gln Val Asn 485 490 495 Glu
Lys Ile Asn Gln Ser Leu Ala Phe Ile Arg Lys Ser Asp Glu Leu 500 505
510 Leu His Asn Val Asn Ala Gly Lys Ser Thr Ile Asn Ile Met Ile Thr
515 520 525 Thr Ile Ile Ile Val Ile Ile Val Ile Leu Leu Ser Leu Ile
Ala Val 530 535 540 Gly Leu Leu Leu Tyr Cys Lys Ala Arg Ser Thr Pro
Val Thr Leu Ser 545 550 555 560 Lys Asp Gln Leu Ser Gly Ile Asn Asn
Ile Ala Phe Ser Asn 565 570 331903DNAArtificialdeoptimized RSV F
sequence 33ggggcaaata acaatggagc tgctgatcct gaaagcgaat gcgattacca
cgatcctgac 60ggcggtcacg ttttgttttg cgtcggggca aaacatcacg gaggagtttt
atcaatcgac 120gtgctcggcg gtttcgaaag ggtatctgtc ggcgctgcgg
acggggtggt atacctcggt 180tataacgata gagctgtcga atatcaagga
gaataagtgt aatgggacgg atgcgaaggt 240aaaactgata aaacaagagc
tggataaata taaaaatgcg gtaacggagc tgcagctgct 300gatgcaatcg
acgccggcga cgaacaatcg ggcgcggcgg gagctgccga ggtttatgaa
360ttatacgctg aacaatgcga aaaaaacgaa tgtaacgctg tcgaagaaaa
ggaaacggcg 420gtttctgggg tttctgctgg gggttgggtc ggcgatcgcg
tcgggggttg cggtatcgaa 480ggtcctgcac ctggaggggg aggtgaacaa
gatcaaatcg gcgctgctgt ccacgaacaa 540ggcggtagtc tcgctgtcga
atggggtttc ggtcctgacg tcgaaagtgc tggacctgaa 600aaactatata
gataaacaac tgctgccgat tgtgaacaag caatcgtgct cgatatcgaa
660tatagcgacg gtgatagagt tccaacaaaa gaacaaccgg ctgctggaga
ttacgcggga 720gttttcggtt aatgcggggg taacgacgcc ggtatcgacg
tacatgctga cgaattcgga 780gctgctgtcg ctgatcaatg atatgccgat
aacgaatgat cagaaaaagc tgatgtcgaa 840caatgttcaa atagttcggc
agcaatcgta ctcgatcatg tcgataataa aagaggaggt 900cctggcgtat
gtagtacaac tgccgctgta tggggttata gatacgccgt gttggaaact
960gcacacgtcg ccgctgtgta cgacgaacac gaaagagggg tcgaacatct
gtctgacgcg 1020gacggaccgg gggtggtact gtgacaatgc ggggtcggta
tcgttcttcc cgcaagcgga 1080gacgtgtaaa gttcaatcga atcgggtatt
ttgtgacacg atgaactcgc tgacgctgcc 1140gtcggaggta aatctgtgca
atgttgacat attcaacccg aaatatgatt gtaaaattat 1200gacgtcgaaa
acggatgtat cgtcgtcggt tatcacgtcg ctgggggcga ttgtgtcgtg
1260ctatgggaaa acgaaatgta cggcgtcgaa taaaaatcgg gggatcataa
agacgttttc 1320gaacgggtgc gattatgtat cgaataaagg ggtggacacg
gtgtcggtag ggaacacgct 1380gtattatgta aataagcaag aggggaaatc
gctgtatgta aaaggggagc cgataataaa 1440tttctatgac ccgctggtat
tcccgtcgga tgagtttgat gcgtcgatat cgcaagtcaa 1500cgagaagatt
aaccagtcgc tggcgtttat tcggaaatcg gatgagctgc tgcataatgt
1560aaatgcgggg aaatcgacga taaatatcat gataacgacg ataattatag
tgattatagt 1620aatactgctg tcgctgattg cggttgggct gctgctgtac
tgtaaggccc ggtcgacgcc 1680ggtcacgctg tcgaaagatc aactgtcggg
gataaataat attgcgtttt cgaactaaat 1740aaaaatagcg cctaatcatg
ttctgacgat ggtttactat ctgctgatag acaacccatc 1800ggtcattgga
ttttcttaaa atctgaactt catcgaaact ctcatctata aaccatctca
1860cttacactat ttaagtagat tcctagttta tagttatata aaa
1903341903DNAHuman respiratory syncytial virusCDS(14)..(1735)
34ggggcaaata aca atg gag ctg ctg atc ctg aaa gcg aat gcg att acc 49
Met Glu Leu Leu Ile Leu Lys Ala Asn Ala Ile Thr 1 5 10 acg atc ctg
acg gcg gtc acg ttt tgt ttt gcg tcg ggg caa aac atc 97Thr Ile Leu
Thr Ala Val Thr Phe Cys Phe Ala Ser Gly Gln Asn Ile 15 20 25 acg
gag gag ttt tat caa tcg acg tgc tcg gcg gtt tcg aaa ggg tat 145Thr
Glu Glu Phe Tyr Gln Ser Thr Cys Ser Ala Val Ser Lys Gly Tyr 30 35
40 ctg tcg gcg ctg cgg acg ggg tgg tat acc tcg gtt ata acg ata gag
193Leu Ser Ala Leu Arg Thr Gly Trp Tyr Thr Ser Val Ile Thr Ile Glu
45 50 55 60 ctg tcg aat atc aag gag aat aag tgt aat ggg acg gat gcg
aag gta 241Leu Ser Asn Ile Lys Glu Asn Lys Cys Asn Gly Thr Asp Ala
Lys Val 65 70 75 aaa ctg ata aaa caa gag ctg gat aaa tat aaa aat
gcg gta acg gag 289Lys Leu Ile Lys Gln Glu Leu Asp Lys Tyr Lys Asn
Ala Val Thr Glu 80 85 90 ctg cag ctg ctg atg caa tcg acg ccg gcg
acg aac aat cgg gcg cgg 337Leu Gln Leu Leu Met Gln Ser Thr Pro Ala
Thr Asn Asn Arg Ala Arg 95 100 105 cgg gag ctg ccg agg ttt atg aat
tat acg ctg aac aat gcg aaa aaa 385Arg Glu Leu Pro Arg Phe Met Asn
Tyr Thr Leu Asn Asn Ala Lys Lys 110 115 120 acg aat gta acg ctg tcg
aag aaa agg aaa cgg cgg ttt ctg ggg ttt 433Thr Asn Val Thr Leu Ser
Lys Lys Arg Lys Arg Arg Phe Leu Gly Phe 125 130 135 140 ctg ctg ggg
gtt ggg tcg gcg atc gcg tcg ggg gtt gcg gta tcg aag 481Leu Leu Gly
Val Gly Ser Ala Ile Ala Ser Gly Val Ala Val Ser Lys 145 150 155 gtc
ctg cac ctg gag ggg gag gtg aac aag atc aaa tcg gcg ctg ctg 529Val
Leu His Leu Glu Gly Glu Val Asn Lys Ile Lys Ser Ala Leu Leu 160 165
170 tcc acg aac aag gcg gta gtc tcg ctg tcg aat ggg gtt tcg gtc ctg
577Ser Thr Asn Lys Ala Val Val Ser Leu Ser Asn Gly Val Ser Val Leu
175 180 185 acg tcg aaa gtg ctg gac ctg aaa aac tat ata gat aaa caa
ctg ctg 625Thr Ser Lys Val Leu Asp Leu Lys Asn Tyr Ile Asp Lys Gln
Leu Leu 190 195 200 ccg att gtg aac aag caa tcg tgc tcg ata tcg aat
ata gcg acg gtg 673Pro Ile Val Asn Lys Gln Ser Cys Ser Ile Ser Asn
Ile Ala Thr Val 205 210 215 220 ata gag ttc caa caa aag aac aac cgg
ctg ctg gag att acg cgg gag 721Ile Glu Phe Gln Gln Lys Asn Asn Arg
Leu Leu Glu Ile Thr Arg Glu 225 230 235 ttt tcg gtt aat gcg ggg gta
acg acg ccg gta tcg acg tac atg ctg 769Phe Ser Val Asn Ala Gly Val
Thr Thr Pro Val Ser Thr Tyr Met Leu 240 245 250 acg aat tcg gag ctg
ctg tcg ctg atc aat gat atg ccg ata acg aat 817Thr Asn Ser Glu Leu
Leu Ser Leu Ile Asn Asp Met Pro Ile Thr Asn 255 260 265 gat cag aaa
aag ctg atg tcg aac aat gtt caa ata gtt cgg cag caa 865Asp Gln Lys
Lys Leu Met Ser Asn Asn Val Gln Ile Val Arg Gln Gln 270 275 280 tcg
tac tcg atc atg tcg ata ata aaa gag gag gtc ctg gcg tat gta 913Ser
Tyr Ser Ile Met Ser Ile Ile Lys Glu Glu Val Leu Ala Tyr Val 285 290
295 300 gta caa ctg ccg ctg tat ggg gtt ata gat acg ccg tgt tgg aaa
ctg 961Val Gln Leu Pro Leu Tyr Gly Val Ile Asp Thr Pro Cys Trp Lys
Leu 305 310 315 cac acg tcg ccg ctg tgt acg acg aac acg aaa gag ggg
tcg aac atc 1009His Thr Ser Pro Leu Cys Thr Thr Asn Thr Lys Glu Gly
Ser Asn Ile 320 325 330 tgt ctg acg cgg acg gac cgg ggg tgg tac tgt
gac aat gcg ggg tcg 1057Cys Leu Thr Arg Thr Asp Arg Gly Trp Tyr Cys
Asp Asn Ala Gly Ser 335 340 345 gta tcg ttc ttc ccg caa gcg gag acg
tgt aaa gtt caa tcg aat cgg 1105Val Ser Phe Phe Pro Gln Ala Glu Thr
Cys Lys Val Gln Ser Asn Arg 350 355 360 gta ttt tgt gac acg atg aac
tcg ctg acg ctg ccg tcg gag gta aat 1153Val Phe Cys Asp Thr Met Asn
Ser Leu Thr Leu Pro Ser Glu Val Asn 365 370 375 380 ctg tgc aat gtt
gac ata ttc aac ccg aaa tat gat tgt aaa att atg 1201Leu Cys Asn Val
Asp Ile Phe Asn Pro Lys Tyr Asp Cys Lys Ile Met 385 390 395 acg tcg
aaa acg gat gta tcg tcg tcg gtt atc acg tcg ctg ggg gcg 1249Thr Ser
Lys Thr Asp Val Ser Ser Ser Val Ile Thr Ser Leu Gly Ala 400 405 410
att gtg tcg tgc tat ggg aaa acg aaa tgt acg gcg tcg aat aaa aat
1297Ile Val Ser Cys Tyr Gly Lys Thr Lys Cys Thr Ala Ser Asn Lys Asn
415 420 425 cgg ggg atc ata aag acg ttt tcg aac ggg tgc gat tat gta
tcg aat 1345Arg Gly Ile Ile Lys Thr Phe Ser Asn Gly Cys Asp Tyr Val
Ser Asn 430 435 440 aaa ggg gtg gac acg gtg tcg gta ggg aac acg ctg
tat tat gta aat 1393Lys Gly Val Asp Thr Val Ser Val Gly Asn Thr Leu
Tyr Tyr Val Asn 445 450 455 460 aag caa gag ggg aaa tcg ctg tat gta
aaa ggg gag ccg ata ata aat 1441Lys Gln Glu Gly Lys Ser Leu Tyr Val
Lys Gly Glu Pro Ile Ile Asn 465 470 475 ttc tat gac ccg ctg gta ttc
ccg tcg gat gag ttt gat gcg tcg ata 1489Phe Tyr Asp Pro Leu Val Phe
Pro Ser Asp Glu Phe Asp Ala Ser Ile 480 485 490 tcg caa gtc aac gag
aag att aac cag tcg ctg gcg ttt att cgg aaa 1537Ser Gln Val Asn Glu
Lys Ile Asn Gln Ser Leu Ala Phe Ile Arg Lys 495 500 505 tcg gat gag
ctg ctg cat aat gta aat gcg ggg aaa tcg acg ata aat 1585Ser Asp Glu
Leu Leu His Asn Val Asn Ala Gly Lys Ser Thr Ile Asn 510 515 520 atc
atg ata acg acg ata att ata gtg att ata gta ata ctg ctg tcg 1633Ile
Met Ile Thr Thr Ile Ile Ile Val Ile Ile Val Ile Leu Leu Ser 525 530
535 540 ctg att gcg gtt ggg ctg ctg ctg tac tgt aag gcc cgg tcg acg
ccg 1681Leu Ile Ala Val Gly Leu Leu Leu Tyr Cys Lys Ala Arg Ser Thr
Pro 545 550 555 gtc acg ctg tcg aaa gat caa ctg tcg ggg ata aat aat
att gcg ttt 1729Val Thr Leu Ser Lys Asp Gln Leu Ser Gly Ile Asn Asn
Ile Ala Phe 560 565 570 tcg aac taaataaaaa tagcgcctaa tcatgttctg
acgatggttt actatctgct 1785Ser Asn gatagacaac ccatcggtca ttggattttc
ttaaaatctg aacttcatcg aaactctcat 1845ctataaacca tctcacttac
actatttaag tagattccta gtttatagtt atataaaa 190335574PRTHuman
respiratory syncytial virus 35Met Glu Leu Leu Ile Leu Lys Ala Asn
Ala Ile Thr Thr Ile Leu Thr 1 5 10 15 Ala Val Thr Phe Cys Phe Ala
Ser Gly Gln Asn Ile Thr Glu Glu Phe 20 25 30 Tyr Gln Ser Thr Cys
Ser Ala Val Ser Lys Gly Tyr Leu Ser Ala Leu 35 40 45 Arg Thr Gly
Trp Tyr Thr Ser Val Ile Thr Ile Glu Leu Ser Asn Ile 50 55 60 Lys
Glu Asn Lys Cys Asn Gly Thr Asp Ala Lys Val Lys Leu Ile Lys 65 70
75 80 Gln Glu Leu Asp Lys Tyr Lys Asn Ala Val Thr Glu Leu Gln Leu
Leu 85 90 95 Met Gln Ser Thr Pro Ala Thr Asn Asn Arg Ala Arg Arg
Glu Leu Pro 100 105 110 Arg Phe Met Asn Tyr Thr Leu Asn Asn Ala Lys
Lys Thr Asn Val Thr 115 120 125 Leu Ser Lys Lys Arg Lys Arg Arg Phe
Leu Gly Phe Leu Leu Gly Val 130 135 140 Gly Ser Ala Ile Ala Ser Gly
Val Ala Val Ser Lys Val Leu His Leu 145 150 155 160 Glu Gly Glu Val
Asn Lys Ile Lys Ser Ala Leu Leu Ser Thr Asn Lys 165 170 175 Ala Val
Val Ser Leu Ser Asn Gly Val Ser Val Leu Thr Ser Lys Val 180 185 190
Leu Asp Leu Lys Asn Tyr Ile Asp Lys Gln Leu Leu Pro Ile Val Asn 195
200 205 Lys Gln Ser Cys Ser Ile Ser Asn Ile Ala Thr Val Ile Glu Phe
Gln 210 215 220 Gln Lys Asn Asn Arg Leu Leu Glu Ile Thr Arg Glu Phe
Ser Val Asn 225 230 235 240 Ala Gly Val Thr Thr Pro Val Ser Thr Tyr
Met Leu Thr Asn Ser Glu 245 250 255 Leu Leu Ser Leu Ile Asn Asp Met
Pro Ile Thr Asn Asp Gln Lys Lys 260 265 270 Leu Met Ser Asn Asn Val
Gln Ile Val Arg Gln Gln Ser Tyr Ser Ile 275 280 285 Met Ser Ile Ile
Lys Glu Glu Val Leu Ala Tyr Val Val Gln Leu Pro 290 295 300 Leu Tyr
Gly Val Ile Asp Thr Pro Cys Trp Lys Leu His Thr Ser Pro 305 310 315
320 Leu Cys Thr Thr Asn Thr Lys Glu Gly Ser Asn Ile Cys Leu Thr Arg
325 330 335 Thr Asp Arg Gly Trp Tyr Cys Asp Asn Ala Gly Ser Val Ser
Phe Phe 340 345
350 Pro Gln Ala Glu Thr Cys Lys Val Gln Ser Asn Arg Val Phe Cys Asp
355 360 365 Thr Met Asn Ser Leu Thr Leu Pro Ser Glu Val Asn Leu Cys
Asn Val 370 375 380 Asp Ile Phe Asn Pro Lys Tyr Asp Cys Lys Ile Met
Thr Ser Lys Thr 385 390 395 400 Asp Val Ser Ser Ser Val Ile Thr Ser
Leu Gly Ala Ile Val Ser Cys 405 410 415 Tyr Gly Lys Thr Lys Cys Thr
Ala Ser Asn Lys Asn Arg Gly Ile Ile 420 425 430 Lys Thr Phe Ser Asn
Gly Cys Asp Tyr Val Ser Asn Lys Gly Val Asp 435 440 445 Thr Val Ser
Val Gly Asn Thr Leu Tyr Tyr Val Asn Lys Gln Glu Gly 450 455 460 Lys
Ser Leu Tyr Val Lys Gly Glu Pro Ile Ile Asn Phe Tyr Asp Pro 465 470
475 480 Leu Val Phe Pro Ser Asp Glu Phe Asp Ala Ser Ile Ser Gln Val
Asn 485 490 495 Glu Lys Ile Asn Gln Ser Leu Ala Phe Ile Arg Lys Ser
Asp Glu Leu 500 505 510 Leu His Asn Val Asn Ala Gly Lys Ser Thr Ile
Asn Ile Met Ile Thr 515 520 525 Thr Ile Ile Ile Val Ile Ile Val Ile
Leu Leu Ser Leu Ile Ala Val 530 535 540 Gly Leu Leu Leu Tyr Cys Lys
Ala Arg Ser Thr Pro Val Thr Leu Ser 545 550 555 560 Lys Asp Gln Leu
Ser Gly Ile Asn Asn Ile Ala Phe Ser Asn 565 570
36923DNAArtificialdeoptimized RSV G sequence 36ggggcgaatg
cgaacatgtc gaaaaacaag gaccaacgga cggcgaagac gctggagcgg 60acgtgggaca
cgctgaatca tctgctgttc atatcgtcgt gcctgtataa gctgaatctg
120aaatcggtag cgcaaatcac gctgtcgatt ctggcgatga taatctcgac
gtcgctgata 180attgcggcga tcatattcat agcgtcggcg aaccacaaag
tcacgccgac gacggcgatc 240atacaagatg cgacgtcgca gatcaagaac
acgacgccga cgtacctgac gcagaatccg 300cagctgggga tctcgccgtc
gaatccgtcg gagattacgt cgcaaatcac gacgatactg 360gcgtcgacga
cgccgggggt caagtcgacg ctgcaatcga cgacggtcaa gacgaaaaac
420acgacgacga cgcaaacgca accgtcgaag ccgacgacga aacaacggca
aaacaaaccg 480ccgtcgaaac cgaataatga ttttcacttt gaggtgttca
actttgtacc gtgctcgata 540tgctcgaaca atccgacgtg ctgggcgatc
tgcaaacgga taccgaacaa aaaaccgggg 600aagaaaacga cgacgaagcc
gacgaaaaaa ccgacgctga agacgacgaa aaaagatccg 660aaaccgcaaa
cgacgaaatc gaaggaggta ccgacgacga agccgacgga ggagccgacg
720atcaacacga cgaaaacgaa catcataacg acgctgctga cgtcgaacac
gacggggaat 780ccggagctga cgtcgcaaat ggagacgttc cactcgacgt
cgtcggaggg gaatccgtcg 840ccgtcgcaag tctcgacgac gtcggagtac
ccgtcgcaac cgtcgtcgcc gccgaacacg 900ccgcggcagt agctgctgaa aaa
923371042DNAInfluenza A virusCDS(1)..(1041) 37caa aaa ctt ccc gga
aat gac aac agc acg gca acg ctg tgc ctt ggg 48Gln Lys Leu Pro Gly
Asn Asp Asn Ser Thr Ala Thr Leu Cys Leu Gly 1 5 10 15 cac cat gca
gta cca aac gga acg att gtg aaa aca atc acg aat gac 96His His Ala
Val Pro Asn Gly Thr Ile Val Lys Thr Ile Thr Asn Asp 20 25 30 caa
att gaa gtt act aat gct act gag ctg gtt cag agt tcc tca aca 144Gln
Ile Glu Val Thr Asn Ala Thr Glu Leu Val Gln Ser Ser Ser Thr 35 40
45 ggt gga ata tgc gac agt cct cat cag atc ctt gat gga gaa aac tgc
192Gly Gly Ile Cys Asp Ser Pro His Gln Ile Leu Asp Gly Glu Asn Cys
50 55 60 aca cta ata gat gct cta ttg gga gac cct cag tgt gat ggc
ttc caa 240Thr Leu Ile Asp Ala Leu Leu Gly Asp Pro Gln Cys Asp Gly
Phe Gln 65 70 75 80 aat aag aaa tgg gac ctt ttt gtt gaa cgc agc aaa
gcc tac agc aac 288Asn Lys Lys Trp Asp Leu Phe Val Glu Arg Ser Lys
Ala Tyr Ser Asn 85 90 95 tgt tac cct tat gat gtg ccg gat tat gcc
tcc ctt agg tca cta gtt 336Cys Tyr Pro Tyr Asp Val Pro Asp Tyr Ala
Ser Leu Arg Ser Leu Val 100 105 110 gcc tca tcc ggc aca ctg gag ttt
aac aat gaa agc ttc aat tgg act 384Ala Ser Ser Gly Thr Leu Glu Phe
Asn Asn Glu Ser Phe Asn Trp Thr 115 120 125 gga gtc act cag aat gga
aca agc tct gct tgc aaa agg aga tct aat 432Gly Val Thr Gln Asn Gly
Thr Ser Ser Ala Cys Lys Arg Arg Ser Asn 130 135 140 aaa agt ttc ttt
agt aga ttg aat tgg ttg acc cat tta aaa tac aaa 480Lys Ser Phe Phe
Ser Arg Leu Asn Trp Leu Thr His Leu Lys Tyr Lys 145 150 155 160 tac
cca gca ttg aac gtg act atg cca aac aat gaa aaa ttt gac aaa 528Tyr
Pro Ala Leu Asn Val Thr Met Pro Asn Asn Glu Lys Phe Asp Lys 165 170
175 ttg tac att tgg ggg gtt cac cac ccg ggt acg gac agt gac caa atc
576Leu Tyr Ile Trp Gly Val His His Pro Gly Thr Asp Ser Asp Gln Ile
180 185 190 agc cta tat gct caa gca tca gga aga atc aca gtc tct acc
aaa aga 624Ser Leu Tyr Ala Gln Ala Ser Gly Arg Ile Thr Val Ser Thr
Lys Arg 195 200 205 agc caa caa act gta atc ccg aat atc gga tct aga
ccc agg gta agg 672Ser Gln Gln Thr Val Ile Pro Asn Ile Gly Ser Arg
Pro Arg Val Arg 210 215 220 gat gtc tcc agc aga ata agc atc tat tgg
aca ata gta aaa ccg gga 720Asp Val Ser Ser Arg Ile Ser Ile Tyr Trp
Thr Ile Val Lys Pro Gly 225 230 235 240 gac ata ctt ttg att aac agc
aca ggg aat cta att gct cct agg ggt 768Asp Ile Leu Leu Ile Asn Ser
Thr Gly Asn Leu Ile Ala Pro Arg Gly 245 250 255 tac ttc aaa ata cga
agt ggg aaa agc tca ata atg aga tca gat gca 816Tyr Phe Lys Ile Arg
Ser Gly Lys Ser Ser Ile Met Arg Ser Asp Ala 260 265 270 ccc att ggc
aaa tgc aat tct gaa tgc atc act cca aat gga agc att 864Pro Ile Gly
Lys Cys Asn Ser Glu Cys Ile Thr Pro Asn Gly Ser Ile 275 280 285 ccc
aat gac aaa cca ttt caa aat gta aac agg atc aca tat ggg gcc 912Pro
Asn Asp Lys Pro Phe Gln Asn Val Asn Arg Ile Thr Tyr Gly Ala 290 295
300 tgt ccc aga tat gtt aag caa aac act ctg aaa ttg gca aca ggg atg
960Cys Pro Arg Tyr Val Lys Gln Asn Thr Leu Lys Leu Ala Thr Gly Met
305 310 315 320 cga aat gta cca gag aaa caa act aga ggc ata ttt ggc
gca atc gcg 1008Arg Asn Val Pro Glu Lys Gln Thr Arg Gly Ile Phe Gly
Ala Ile Ala 325 330 335 ggt ttc ata gaa aat ggt tgg gag gga atg gtg
g 1042Gly Phe Ile Glu Asn Gly Trp Glu Gly Met Val 340 345
38347PRTInfluenza A virus 38Gln Lys Leu Pro Gly Asn Asp Asn Ser Thr
Ala Thr Leu Cys Leu Gly 1 5 10 15 His His Ala Val Pro Asn Gly Thr
Ile Val Lys Thr Ile Thr Asn Asp 20 25 30 Gln Ile Glu Val Thr Asn
Ala Thr Glu Leu Val Gln Ser Ser Ser Thr 35 40 45 Gly Gly Ile Cys
Asp Ser Pro His Gln Ile Leu Asp Gly Glu Asn Cys 50 55 60 Thr Leu
Ile Asp Ala Leu Leu Gly Asp Pro Gln Cys Asp Gly Phe Gln 65 70 75 80
Asn Lys Lys Trp Asp Leu Phe Val Glu Arg Ser Lys Ala Tyr Ser Asn 85
90 95 Cys Tyr Pro Tyr Asp Val Pro Asp Tyr Ala Ser Leu Arg Ser Leu
Val 100 105 110 Ala Ser Ser Gly Thr Leu Glu Phe Asn Asn Glu Ser Phe
Asn Trp Thr 115 120 125 Gly Val Thr Gln Asn Gly Thr Ser Ser Ala Cys
Lys Arg Arg Ser Asn 130 135 140 Lys Ser Phe Phe Ser Arg Leu Asn Trp
Leu Thr His Leu Lys Tyr Lys 145 150 155 160 Tyr Pro Ala Leu Asn Val
Thr Met Pro Asn Asn Glu Lys Phe Asp Lys 165 170 175 Leu Tyr Ile Trp
Gly Val His His Pro Gly Thr Asp Ser Asp Gln Ile 180 185 190 Ser Leu
Tyr Ala Gln Ala Ser Gly Arg Ile Thr Val Ser Thr Lys Arg 195 200 205
Ser Gln Gln Thr Val Ile Pro Asn Ile Gly Ser Arg Pro Arg Val Arg 210
215 220 Asp Val Ser Ser Arg Ile Ser Ile Tyr Trp Thr Ile Val Lys Pro
Gly 225 230 235 240 Asp Ile Leu Leu Ile Asn Ser Thr Gly Asn Leu Ile
Ala Pro Arg Gly 245 250 255 Tyr Phe Lys Ile Arg Ser Gly Lys Ser Ser
Ile Met Arg Ser Asp Ala 260 265 270 Pro Ile Gly Lys Cys Asn Ser Glu
Cys Ile Thr Pro Asn Gly Ser Ile 275 280 285 Pro Asn Asp Lys Pro Phe
Gln Asn Val Asn Arg Ile Thr Tyr Gly Ala 290 295 300 Cys Pro Arg Tyr
Val Lys Gln Asn Thr Leu Lys Leu Ala Thr Gly Met 305 310 315 320 Arg
Asn Val Pro Glu Lys Gln Thr Arg Gly Ile Phe Gly Ala Ile Ala 325 330
335 Gly Phe Ile Glu Asn Gly Trp Glu Gly Met Val 340 345
391042DNAArtificialdeoptimized influenza HA sequence 39caaaaattac
cgggcaatga caactcgacg gcgacgttat gcttaggcca ccatgcggta 60ccgaacggca
cgatcgtgaa aacgatcacg aatgaccaaa tcgaagttac gaatgctacg
120gagttagttc agtcgtcgtc gacgggcggc atctgcgact cgccgcatca
gatcttagat 180ggcgaaaact gcacgttaat cgatgcttta ttaggcgacc
cgcagtgtga tggcttccaa 240aataagaaat gggacttatt tgttgaacgc
tcgaaagcgt actcgaactg ttacccgtat 300gatgtgccgg attatgcgtc
gttacgctcg ttagttgcgt cgtcgggcac gttagagttt 360aacaatgaat
cgttcaattg gacgggcgtc acgcagaatg gcacgtcgtc ggcttgcaaa
420cgccgctcga ataaatcgtt cttttcgcgc ttaaattggt taacgcattt
aaaatacaaa 480tacccggcgt taaacgtgac gatgccgaac aatgaaaaat
ttgacaaatt atacatctgg 540ggcgttcacc acccgggcac ggactcggac
caaatctcgt tatatgctca agcgtcgggc 600cgcatcacgg tctcgacgaa
acgctcgcaa caaacggtaa tcccgaatat cggctcgcgc 660ccgcgcgtac
gcgatgtctc gtcgcgcatc tcgatctatt ggacgatcgt aaaaccgggc
720gacatcttat taatcaactc gacgggcaat ttaatcgctc cgcgcggcta
cttcaaaatc 780cgctcgggca aatcgtcgat catgcgctcg gatgcgccga
tcggcaaatg caattcggaa 840tgcatcacgc cgaatggctc gatcccgaat
gacaaaccgt ttcaaaatgt aaaccgcatc 900acgtatggcg cgtgtccgcg
ctatgttaag caaaacacgt taaaattagc gacgggcatg 960cgcaatgtac
cggagaaaca aacgcgcggc atctttggcg cgatcgcggg cttcatcgaa
1020aatggctggg agggcatggt gg 1042401459DNAInfluenza
virusCDS(1)..(1425)misc_feature(15)..(15)n is a, c, g, or t 40aaa
gca gga gtg aan atg aat cca aat caa aag ata ata acg att ggc 48Lys
Ala Gly Val Xaa Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Gly 1 5 10
15 tct gtt tct ctc acc att tcc aca ata tgc ttc ttc atg caa att gcc
96Ser Val Ser Leu Thr Ile Ser Thr Ile Cys Phe Phe Met Gln Ile Ala
20 25 30 atc ctg ata act act gta aca ttg cat ttc aag caa tat gaa
ttc aac 144Ile Leu Ile Thr Thr Val Thr Leu His Phe Lys Gln Tyr Glu
Phe Asn 35 40 45 tcc ccc cca aac aac caa gtg atg ctg tgt gaa cca
aca ata ata gaa 192Ser Pro Pro Asn Asn Gln Val Met Leu Cys Glu Pro
Thr Ile Ile Glu 50 55 60 aga aac ata aca gag ata gtg tat ctg acc
aac acc acc ata gag aag 240Arg Asn Ile Thr Glu Ile Val Tyr Leu Thr
Asn Thr Thr Ile Glu Lys 65 70 75 80 gaa ata tgc ccc aaa cta gca gaa
tac aga aat tgg tca aag ccg caa 288Glu Ile Cys Pro Lys Leu Ala Glu
Tyr Arg Asn Trp Ser Lys Pro Gln 85 90 95 tgt aac att aca gga ttt
gca cct ttt tct aag gac aat tcg att cgg 336Cys Asn Ile Thr Gly Phe
Ala Pro Phe Ser Lys Asp Asn Ser Ile Arg 100 105 110 ctt tcc gct ggt
ggg gac atc tgg gtg aca aga gaa cct tat gtg tca 384Leu Ser Ala Gly
Gly Asp Ile Trp Val Thr Arg Glu Pro Tyr Val Ser 115 120 125 tgc gat
cct gac aag tgt tat caa ttt gcc ctt gga cag gga aca aca 432Cys Asp
Pro Asp Lys Cys Tyr Gln Phe Ala Leu Gly Gln Gly Thr Thr 130 135 140
cta aac aac gtg cat tca aat gac aca gta cat gat agg acc cct tat
480Leu Asn Asn Val His Ser Asn Asp Thr Val His Asp Arg Thr Pro Tyr
145 150 155 160 cgg acc cta ttg atg aat gag ttg ggt gtt cca ttt cat
ctg ggg acc 528Arg Thr Leu Leu Met Asn Glu Leu Gly Val Pro Phe His
Leu Gly Thr 165 170 175 aag caa gtg tgc ata gca tgg tcc agc tca agt
tgt cac gat gga aag 576Lys Gln Val Cys Ile Ala Trp Ser Ser Ser Ser
Cys His Asp Gly Lys 180 185 190 gca tgg ctg cat gtt tgt gta acg ggg
gat gat gaa aat gca act gct 624Ala Trp Leu His Val Cys Val Thr Gly
Asp Asp Glu Asn Ala Thr Ala 195 200 205 agc ttc att tac aat ggg agg
ctt gta gat agt att gtt tca tgg tcc 672Ser Phe Ile Tyr Asn Gly Arg
Leu Val Asp Ser Ile Val Ser Trp Ser 210 215 220 aaa aaa atc ctc agg
acc cag gag tca gaa tgc gtt tgt atc aat gga 720Lys Lys Ile Leu Arg
Thr Gln Glu Ser Glu Cys Val Cys Ile Asn Gly 225 230 235 240 act tgt
aca gta gta atg act gat ggg agt gct tca gga aaa gct gat 768Thr Cys
Thr Val Val Met Thr Asp Gly Ser Ala Ser Gly Lys Ala Asp 245 250 255
act aaa ata cta ttc att gag gag ggg aaa atc gtt cat act agc aca
816Thr Lys Ile Leu Phe Ile Glu Glu Gly Lys Ile Val His Thr Ser Thr
260 265 270 ttg tca gga agt gct cag cat gtc gag gag tgc tcc tgt tat
cct cga 864Leu Ser Gly Ser Ala Gln His Val Glu Glu Cys Ser Cys Tyr
Pro Arg 275 280 285 tat cct ggt gtc aga tgt gtc tgc aga gac aac tgg
aaa ggc tcc aat 912Tyr Pro Gly Val Arg Cys Val Cys Arg Asp Asn Trp
Lys Gly Ser Asn 290 295 300 agg ccc atc gta gat ata aac ata aag gat
tat agc att gtt tcc agt 960Arg Pro Ile Val Asp Ile Asn Ile Lys Asp
Tyr Ser Ile Val Ser Ser 305 310 315 320 tat gtg tgc tca gga ctt gtt
gga gac aca ccc aga aaa aac gac agc 1008Tyr Val Cys Ser Gly Leu Val
Gly Asp Thr Pro Arg Lys Asn Asp Ser 325 330 335 tcc agc agt agc cat
tgc ttg gat cca aac aat gag gaa ggt ggt cat 1056Ser Ser Ser Ser His
Cys Leu Asp Pro Asn Asn Glu Glu Gly Gly His 340 345 350 gga gtg aaa
ggc tgg gcc ttt gat gat gga aat gac gtg tgg atg gga 1104Gly Val Lys
Gly Trp Ala Phe Asp Asp Gly Asn Asp Val Trp Met Gly 355 360 365 aga
acg atc agc gag aag tta cgc tca gga tat gaa acc ttc aaa gtc 1152Arg
Thr Ile Ser Glu Lys Leu Arg Ser Gly Tyr Glu Thr Phe Lys Val 370 375
380 att gaa ggc tgg tcc aac cct aac tcc aaa ttg cag ata aat agg caa
1200Ile Glu Gly Trp Ser Asn Pro Asn Ser Lys Leu Gln Ile Asn Arg Gln
385 390 395 400 gtc ata gtt gac aga ggt aat agg tcc ggt tat tct ggt
att ttc tct 1248Val Ile Val Asp Arg Gly Asn Arg Ser Gly Tyr Ser Gly
Ile Phe Ser 405 410 415 gtt gaa ggc aaa agc tgc atc aat cgg tgc ttt
tat gtg gag ttg ata 1296Val Glu Gly Lys Ser Cys Ile Asn Arg Cys Phe
Tyr Val Glu Leu Ile 420 425 430 agg gga aga aaa caa gaa act gaa gtc
ttg tgg acc tca aac agt att 1344Arg Gly Arg Lys Gln Glu Thr Glu Val
Leu Trp Thr Ser Asn Ser Ile 435 440 445 gtt gtg ttt tgt ggc acc tca
ggt aca tat gga aca ggc tca tgg cct 1392Val Val Phe Cys Gly Thr Ser
Gly Thr Tyr Gly Thr Gly Ser Trp Pro
450 455 460 gat ggg gcg gac atc aat ctc atg cct ata taa gctttcgcaa
ttttagaaaa 1445Asp Gly Ala Asp Ile Asn Leu Met Pro Ile 465 470
aactccttgt ttcc 145941474PRTInfluenza virusmisc_feature(5)..(5)The
'Xaa' at location 5 stands for Lys, or Asn. 41Lys Ala Gly Val Xaa
Met Asn Pro Asn Gln Lys Ile Ile Thr Ile Gly 1 5 10 15 Ser Val Ser
Leu Thr Ile Ser Thr Ile Cys Phe Phe Met Gln Ile Ala 20 25 30 Ile
Leu Ile Thr Thr Val Thr Leu His Phe Lys Gln Tyr Glu Phe Asn 35 40
45 Ser Pro Pro Asn Asn Gln Val Met Leu Cys Glu Pro Thr Ile Ile Glu
50 55 60 Arg Asn Ile Thr Glu Ile Val Tyr Leu Thr Asn Thr Thr Ile
Glu Lys 65 70 75 80 Glu Ile Cys Pro Lys Leu Ala Glu Tyr Arg Asn Trp
Ser Lys Pro Gln 85 90 95 Cys Asn Ile Thr Gly Phe Ala Pro Phe Ser
Lys Asp Asn Ser Ile Arg 100 105 110 Leu Ser Ala Gly Gly Asp Ile Trp
Val Thr Arg Glu Pro Tyr Val Ser 115 120 125 Cys Asp Pro Asp Lys Cys
Tyr Gln Phe Ala Leu Gly Gln Gly Thr Thr 130 135 140 Leu Asn Asn Val
His Ser Asn Asp Thr Val His Asp Arg Thr Pro Tyr 145 150 155 160 Arg
Thr Leu Leu Met Asn Glu Leu Gly Val Pro Phe His Leu Gly Thr 165 170
175 Lys Gln Val Cys Ile Ala Trp Ser Ser Ser Ser Cys His Asp Gly Lys
180 185 190 Ala Trp Leu His Val Cys Val Thr Gly Asp Asp Glu Asn Ala
Thr Ala 195 200 205 Ser Phe Ile Tyr Asn Gly Arg Leu Val Asp Ser Ile
Val Ser Trp Ser 210 215 220 Lys Lys Ile Leu Arg Thr Gln Glu Ser Glu
Cys Val Cys Ile Asn Gly 225 230 235 240 Thr Cys Thr Val Val Met Thr
Asp Gly Ser Ala Ser Gly Lys Ala Asp 245 250 255 Thr Lys Ile Leu Phe
Ile Glu Glu Gly Lys Ile Val His Thr Ser Thr 260 265 270 Leu Ser Gly
Ser Ala Gln His Val Glu Glu Cys Ser Cys Tyr Pro Arg 275 280 285 Tyr
Pro Gly Val Arg Cys Val Cys Arg Asp Asn Trp Lys Gly Ser Asn 290 295
300 Arg Pro Ile Val Asp Ile Asn Ile Lys Asp Tyr Ser Ile Val Ser Ser
305 310 315 320 Tyr Val Cys Ser Gly Leu Val Gly Asp Thr Pro Arg Lys
Asn Asp Ser 325 330 335 Ser Ser Ser Ser His Cys Leu Asp Pro Asn Asn
Glu Glu Gly Gly His 340 345 350 Gly Val Lys Gly Trp Ala Phe Asp Asp
Gly Asn Asp Val Trp Met Gly 355 360 365 Arg Thr Ile Ser Glu Lys Leu
Arg Ser Gly Tyr Glu Thr Phe Lys Val 370 375 380 Ile Glu Gly Trp Ser
Asn Pro Asn Ser Lys Leu Gln Ile Asn Arg Gln 385 390 395 400 Val Ile
Val Asp Arg Gly Asn Arg Ser Gly Tyr Ser Gly Ile Phe Ser 405 410 415
Val Glu Gly Lys Ser Cys Ile Asn Arg Cys Phe Tyr Val Glu Leu Ile 420
425 430 Arg Gly Arg Lys Gln Glu Thr Glu Val Leu Trp Thr Ser Asn Ser
Ile 435 440 445 Val Val Phe Cys Gly Thr Ser Gly Thr Tyr Gly Thr Gly
Ser Trp Pro 450 455 460 Asp Gly Ala Asp Ile Asn Leu Met Pro Ile 465
470 421459DNAArtificialdeoptimized influena NA sequence
42aaagcgggcg tgaanatgaa tccgaatcaa aagatcatca cgatcggctc ggtttcgtta
60acgatctcga cgatctgctt cttcatgcaa atcgcgatct taatcacgac ggtaacgtta
120catttcaagc aatatgaatt caactcgccg ccgaacaacc aagtgatgtt
atgtgaaccg 180acgatcatcg aacgcaacat cacggagatc gtgtatttaa
cgaacacgac gatcgagaag 240gaaatctgcc cgaaattagc ggaataccgc
aattggtcga agccgcaatg taacatcacg 300ggctttgcgc cgttttcgaa
ggacaattcg atccgcttat cggcgggcgg cgacatctgg 360gtgacgcgcg
aaccgtatgt gtcgtgcgat ccggacaagt gttatcaatt tgcgttaggc
420cagggcacga cgttaaacaa cgtgcattcg aatgacacgg tacatgatcg
cacgccgtat 480cgcacgttat taatgaatga gttaggcgtt ccgtttcatt
taggcacgaa gcaagtgtgc 540atcgcgtggt cgtcgtcgtc gtgtcacgat
ggcaaggcgt ggttacatgt ttgtgtaacg 600ggcgatgatg aaaatgcgac
ggcgtcgttc atctacaatg gccgcttagt agattcgatc 660gtttcgtggt
cgaaaaaaat cttacgcacg caggagtcgg aatgcgtttg tatcaatggc
720acgtgtacgg tagtaatgac ggatggctcg gcgtcgggca aagcggatac
gaaaatctta 780ttcatcgagg agggcaaaat cgttcatacg tcgacgttat
cgggctcggc gcagcatgtc 840gaggagtgct cgtgttatcc gcgctatccg
ggcgtccgct gtgtctgccg cgacaactgg 900aaaggctcga atcgcccgat
cgtagatatc aacatcaagg attattcgat cgtttcgtcg 960tatgtgtgct
cgggcttagt tggcgacacg ccgcgcaaaa acgactcgtc gtcgtcgtcg
1020cattgcttag atccgaacaa tgaggaaggc ggccatggcg tgaaaggctg
ggcgtttgat 1080gatggcaatg acgtgtggat gggccgcacg atctcggaga
agttacgctc gggctatgaa 1140acgttcaaag tcatcgaagg ctggtcgaac
ccgaactcga aattacagat caatcgccaa 1200gtcatcgttg accgcggcaa
tcgctcgggc tattcgggca tcttctcggt tgaaggcaaa 1260tcgtgcatca
atcgctgctt ttatgtggag ttaatccgcg gccgcaaaca agaaacggaa
1320gtcttatgga cgtcgaactc gatcgttgtg ttttgtggca cgtcgggcac
gtatggcacg 1380ggctcgtggc cggatggcgc ggacatcaat ttaatgccga
tctaagcgtt cgcgatctta 1440gaaaaaacgc cgtgtttcc 1459432550DNAHuman
immunodeficiency virus type 1CDS(1)..(2550) 43atg aga gtg atg ggg
ata ttg aag aat tat cag caa tgg tgg atg tgg 48Met Arg Val Met Gly
Ile Leu Lys Asn Tyr Gln Gln Trp Trp Met Trp 1 5 10 15 ggc atc tta
ggc ttt tgg atg tta ata att agt agt gtg gta gga aac 96Gly Ile Leu
Gly Phe Trp Met Leu Ile Ile Ser Ser Val Val Gly Asn 20 25 30 ttg
tgg gtc aca gtc tat tat ggg gta cct gtg tgg aaa gaa gca aaa 144Leu
Trp Val Thr Val Tyr Tyr Gly Val Pro Val Trp Lys Glu Ala Lys 35 40
45 act act cta ttc tgt aca tca gat gct aaa gca tat gag aca gag gtg
192Thr Thr Leu Phe Cys Thr Ser Asp Ala Lys Ala Tyr Glu Thr Glu Val
50 55 60 cat aat gtc tgg gct aca cat gcc tgt gta ccc aca gac ccc
aac cca 240His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro
Asn Pro 65 70 75 80 caa gaa ata gtt ttg gaa aat gta aca gaa aat ttt
aac atg tgg aaa 288Gln Glu Ile Val Leu Glu Asn Val Thr Glu Asn Phe
Asn Met Trp Lys 85 90 95 aat gac atg gtg gat cag atg cat gag gat
ata atc agt tta tgg gac 336Asn Asp Met Val Asp Gln Met His Glu Asp
Ile Ile Ser Leu Trp Asp 100 105 110 caa agc cta aag cca tgt gta aag
ttg acc cca ctc tgt gtc act tta 384Gln Ser Leu Lys Pro Cys Val Lys
Leu Thr Pro Leu Cys Val Thr Leu 115 120 125 aaa tgt aga aat gtt aat
gct acc aac aat att aat agc atg att gat 432Lys Cys Arg Asn Val Asn
Ala Thr Asn Asn Ile Asn Ser Met Ile Asp 130 135 140 aac agt aat aag
gga gaa atg aaa aat tgc tct ttc aat gta acc aca 480Asn Ser Asn Lys
Gly Glu Met Lys Asn Cys Ser Phe Asn Val Thr Thr 145 150 155 160 gaa
cta aga gat agg aaa cag gaa gta cat gca ctt ttt tat aga ctt 528Glu
Leu Arg Asp Arg Lys Gln Glu Val His Ala Leu Phe Tyr Arg Leu 165 170
175 gat gta gta cca ctt cag ggc aac aac tct aat gag tat aga tta ata
576Asp Val Val Pro Leu Gln Gly Asn Asn Ser Asn Glu Tyr Arg Leu Ile
180 185 190 aat tgt aat acg tca gcc ata aca caa gcc tgt cca aag gtc
tct ttt 624Asn Cys Asn Thr Ser Ala Ile Thr Gln Ala Cys Pro Lys Val
Ser Phe 195 200 205 gat cca att cct ata cat tat tgt act cca gct ggt
tat gcg att cta 672Asp Pro Ile Pro Ile His Tyr Cys Thr Pro Ala Gly
Tyr Ala Ile Leu 210 215 220 aag tgt aat aat cag aca ttc aat ggg aca
gga cca tgc aat aat gtc 720Lys Cys Asn Asn Gln Thr Phe Asn Gly Thr
Gly Pro Cys Asn Asn Val 225 230 235 240 agc tca gta caa tgt gca cat
gga att aag cca gtg gta tca act cag 768Ser Ser Val Gln Cys Ala His
Gly Ile Lys Pro Val Val Ser Thr Gln 245 250 255 cta ctg tta aat ggt
agc gta gca aaa gga gag ata ata att aga tct 816Leu Leu Leu Asn Gly
Ser Val Ala Lys Gly Glu Ile Ile Ile Arg Ser 260 265 270 gaa aat ctg
aca aac aat gcc aaa ata ata ata gta caa ctt aat aaa 864Glu Asn Leu
Thr Asn Asn Ala Lys Ile Ile Ile Val Gln Leu Asn Lys 275 280 285 cct
gta aaa att gtg tgt gta agg cct aac aat aat aca aga aaa agt 912Pro
Val Lys Ile Val Cys Val Arg Pro Asn Asn Asn Thr Arg Lys Ser 290 295
300 gta agg ata gga cca gga caa aca ttc tat gca aca gga gaa ata ata
960Val Arg Ile Gly Pro Gly Gln Thr Phe Tyr Ala Thr Gly Glu Ile Ile
305 310 315 320 gga gac ata aga caa gca tat tgt atc att aat aaa act
gaa tgg aat 1008Gly Asp Ile Arg Gln Ala Tyr Cys Ile Ile Asn Lys Thr
Glu Trp Asn 325 330 335 agc act tta caa ggg gta agt aaa aaa tta gaa
gaa cac ttc tct aaa 1056Ser Thr Leu Gln Gly Val Ser Lys Lys Leu Glu
Glu His Phe Ser Lys 340 345 350 aaa gca ata aaa tgt gaa ccg tca tca
gga ggg gac cta gaa att aca 1104Lys Ala Ile Lys Cys Glu Pro Ser Ser
Gly Gly Asp Leu Glu Ile Thr 355 360 365 aca cat agc ttt aat tgt aga
gga gaa ttt ttc tat tgc gac aca tca 1152Thr His Ser Phe Asn Cys Arg
Gly Glu Phe Phe Tyr Cys Asp Thr Ser 370 375 380 caa ctg ttt aat agt
aca tac agt ccc agt ttt aat ggt aca gaa aat 1200Gln Leu Phe Asn Ser
Thr Tyr Ser Pro Ser Phe Asn Gly Thr Glu Asn 385 390 395 400 aaa tta
aac ggg acc atc aca atc aca tgt aga ata aaa caa att ata 1248Lys Leu
Asn Gly Thr Ile Thr Ile Thr Cys Arg Ile Lys Gln Ile Ile 405 410 415
aac atg tgg caa aag gta gga aga gca atg tat gcc cct ccc att gca
1296Asn Met Trp Gln Lys Val Gly Arg Ala Met Tyr Ala Pro Pro Ile Ala
420 425 430 gga aac cta aca tgt gaa tca gat atc aca gga tta cta ttg
aca cgt 1344Gly Asn Leu Thr Cys Glu Ser Asp Ile Thr Gly Leu Leu Leu
Thr Arg 435 440 445 gat gga gga aaa aca ggt cca aat gac aca gag ata
ttc aga cct gga 1392Asp Gly Gly Lys Thr Gly Pro Asn Asp Thr Glu Ile
Phe Arg Pro Gly 450 455 460 gga ggg gat atg agg gac aac tgg aga aat
gaa tta tat aaa tat aaa 1440Gly Gly Asp Met Arg Asp Asn Trp Arg Asn
Glu Leu Tyr Lys Tyr Lys 465 470 475 480 gta gta gaa att aag cca ttg
gga gta gca ccc act gag gca aaa agg 1488Val Val Glu Ile Lys Pro Leu
Gly Val Ala Pro Thr Glu Ala Lys Arg 485 490 495 aga gtg gtg gag aga
gaa aaa aga gca gtg gga ata gga gct gtg tgc 1536Arg Val Val Glu Arg
Glu Lys Arg Ala Val Gly Ile Gly Ala Val Cys 500 505 510 ctt ggg ttc
ttg gga gca gct gga agc act atg ggc gcg gcg tca ata 1584Leu Gly Phe
Leu Gly Ala Ala Gly Ser Thr Met Gly Ala Ala Ser Ile 515 520 525 acg
ctg acg gta cag gcc aga cta ttg ttg tct ggt ata gtg cag cag 1632Thr
Leu Thr Val Gln Ala Arg Leu Leu Leu Ser Gly Ile Val Gln Gln 530 535
540 caa aac aat ctg ctg agg gct ata gag gcg caa cag cat ctg ttg caa
1680Gln Asn Asn Leu Leu Arg Ala Ile Glu Ala Gln Gln His Leu Leu Gln
545 550 555 560 ctc aca gtc tgg ggc att aag cag ctc cag aca aga atc
ttg gct gta 1728Leu Thr Val Trp Gly Ile Lys Gln Leu Gln Thr Arg Ile
Leu Ala Val 565 570 575 gaa aga tac cta aag gat caa cag ctc cta ggg
att tgg ggc tgc tct 1776Glu Arg Tyr Leu Lys Asp Gln Gln Leu Leu Gly
Ile Trp Gly Cys Ser 580 585 590 gga aaa ctc atc tgc acc act gct gtg
cct tgg aac tcc agt tgg agt 1824Gly Lys Leu Ile Cys Thr Thr Ala Val
Pro Trp Asn Ser Ser Trp Ser 595 600 605 aat aga tct cat gat gag att
tgg gat aac atg acc tgg atg cag tgg 1872Asn Arg Ser His Asp Glu Ile
Trp Asp Asn Met Thr Trp Met Gln Trp 610 615 620 gat aga gaa att aat
aat tac aca gac aca ata tac agg ttg ctt gaa 1920Asp Arg Glu Ile Asn
Asn Tyr Thr Asp Thr Ile Tyr Arg Leu Leu Glu 625 630 635 640 gaa tca
caa aac cag cag gag aaa aat gaa aag gat tta tta gca ttg 1968Glu Ser
Gln Asn Gln Gln Glu Lys Asn Glu Lys Asp Leu Leu Ala Leu 645 650 655
gac agt tgg caa aat ctg tgg aat tgg ttt agc ata aca aat tgg ctg
2016Asp Ser Trp Gln Asn Leu Trp Asn Trp Phe Ser Ile Thr Asn Trp Leu
660 665 670 tgg tat ata aaa ata ttc ata atg ata gta gga ggc ttg ata
ggt tta 2064Trp Tyr Ile Lys Ile Phe Ile Met Ile Val Gly Gly Leu Ile
Gly Leu 675 680 685 aga ata att ttt gct gtg ctt tct ata gtg aat aga
gtt agg cag gga 2112Arg Ile Ile Phe Ala Val Leu Ser Ile Val Asn Arg
Val Arg Gln Gly 690 695 700 tac tca cct ctg ccg ttt cag acc ctt acc
ccg aac cca agg gaa ccc 2160Tyr Ser Pro Leu Pro Phe Gln Thr Leu Thr
Pro Asn Pro Arg Glu Pro 705 710 715 720 gac agg ctc gga aga atc gaa
gaa gaa ggt gga gag caa gac aga ggc 2208Asp Arg Leu Gly Arg Ile Glu
Glu Glu Gly Gly Glu Gln Asp Arg Gly 725 730 735 aga tcc att cgc tta
gtg agc gga ttc tta gcg ctt gcc tgg gac gac 2256Arg Ser Ile Arg Leu
Val Ser Gly Phe Leu Ala Leu Ala Trp Asp Asp 740 745 750 ctg cgg agc
ctg tgc ctt ttc agc tac cac cga ttg aga gac ttc ata 2304Leu Arg Ser
Leu Cys Leu Phe Ser Tyr His Arg Leu Arg Asp Phe Ile 755 760 765 ttg
att gca gca aga gtg ttg gaa ctt ctg gga cag agg ggg tgg gaa 2352Leu
Ile Ala Ala Arg Val Leu Glu Leu Leu Gly Gln Arg Gly Trp Glu 770 775
780 gcc ctt aaa tat ctg gga agc ctt gtg cag tat tgg ggt cta gag cta
2400Ala Leu Lys Tyr Leu Gly Ser Leu Val Gln Tyr Trp Gly Leu Glu Leu
785 790 795 800 aaa aag agt gct att agt ctg ctt gat acc ata gca ata
gca gta gct 2448Lys Lys Ser Ala Ile Ser Leu Leu Asp Thr Ile Ala Ile
Ala Val Ala 805 810 815 gaa gga aca gat agg att ata gaa ttc ata caa
aga att tgt aga gct 2496Glu Gly Thr Asp Arg Ile Ile Glu Phe Ile Gln
Arg Ile Cys Arg Ala 820 825 830 att cgc aac ata cct aga aga ata aga
cag ggc ttt gaa gca gct ttg 2544Ile Arg Asn Ile Pro Arg Arg Ile Arg
Gln Gly Phe Glu Ala Ala Leu 835 840 845 caa taa 2550Gln
44849PRTHuman immunodeficiency virus type 1 44Met Arg Val Met Gly
Ile Leu Lys Asn Tyr Gln Gln Trp Trp Met Trp 1 5 10 15 Gly Ile Leu
Gly Phe Trp Met Leu Ile Ile Ser Ser Val Val Gly Asn 20 25 30 Leu
Trp Val Thr Val Tyr Tyr Gly Val Pro Val Trp Lys Glu Ala Lys 35 40
45 Thr
Thr Leu Phe Cys Thr Ser Asp Ala Lys Ala Tyr Glu Thr Glu Val 50 55
60 His Asn Val Trp Ala Thr His Ala Cys Val Pro Thr Asp Pro Asn Pro
65 70 75 80 Gln Glu Ile Val Leu Glu Asn Val Thr Glu Asn Phe Asn Met
Trp Lys 85 90 95 Asn Asp Met Val Asp Gln Met His Glu Asp Ile Ile
Ser Leu Trp Asp 100 105 110 Gln Ser Leu Lys Pro Cys Val Lys Leu Thr
Pro Leu Cys Val Thr Leu 115 120 125 Lys Cys Arg Asn Val Asn Ala Thr
Asn Asn Ile Asn Ser Met Ile Asp 130 135 140 Asn Ser Asn Lys Gly Glu
Met Lys Asn Cys Ser Phe Asn Val Thr Thr 145 150 155 160 Glu Leu Arg
Asp Arg Lys Gln Glu Val His Ala Leu Phe Tyr Arg Leu 165 170 175 Asp
Val Val Pro Leu Gln Gly Asn Asn Ser Asn Glu Tyr Arg Leu Ile 180 185
190 Asn Cys Asn Thr Ser Ala Ile Thr Gln Ala Cys Pro Lys Val Ser Phe
195 200 205 Asp Pro Ile Pro Ile His Tyr Cys Thr Pro Ala Gly Tyr Ala
Ile Leu 210 215 220 Lys Cys Asn Asn Gln Thr Phe Asn Gly Thr Gly Pro
Cys Asn Asn Val 225 230 235 240 Ser Ser Val Gln Cys Ala His Gly Ile
Lys Pro Val Val Ser Thr Gln 245 250 255 Leu Leu Leu Asn Gly Ser Val
Ala Lys Gly Glu Ile Ile Ile Arg Ser 260 265 270 Glu Asn Leu Thr Asn
Asn Ala Lys Ile Ile Ile Val Gln Leu Asn Lys 275 280 285 Pro Val Lys
Ile Val Cys Val Arg Pro Asn Asn Asn Thr Arg Lys Ser 290 295 300 Val
Arg Ile Gly Pro Gly Gln Thr Phe Tyr Ala Thr Gly Glu Ile Ile 305 310
315 320 Gly Asp Ile Arg Gln Ala Tyr Cys Ile Ile Asn Lys Thr Glu Trp
Asn 325 330 335 Ser Thr Leu Gln Gly Val Ser Lys Lys Leu Glu Glu His
Phe Ser Lys 340 345 350 Lys Ala Ile Lys Cys Glu Pro Ser Ser Gly Gly
Asp Leu Glu Ile Thr 355 360 365 Thr His Ser Phe Asn Cys Arg Gly Glu
Phe Phe Tyr Cys Asp Thr Ser 370 375 380 Gln Leu Phe Asn Ser Thr Tyr
Ser Pro Ser Phe Asn Gly Thr Glu Asn 385 390 395 400 Lys Leu Asn Gly
Thr Ile Thr Ile Thr Cys Arg Ile Lys Gln Ile Ile 405 410 415 Asn Met
Trp Gln Lys Val Gly Arg Ala Met Tyr Ala Pro Pro Ile Ala 420 425 430
Gly Asn Leu Thr Cys Glu Ser Asp Ile Thr Gly Leu Leu Leu Thr Arg 435
440 445 Asp Gly Gly Lys Thr Gly Pro Asn Asp Thr Glu Ile Phe Arg Pro
Gly 450 455 460 Gly Gly Asp Met Arg Asp Asn Trp Arg Asn Glu Leu Tyr
Lys Tyr Lys 465 470 475 480 Val Val Glu Ile Lys Pro Leu Gly Val Ala
Pro Thr Glu Ala Lys Arg 485 490 495 Arg Val Val Glu Arg Glu Lys Arg
Ala Val Gly Ile Gly Ala Val Cys 500 505 510 Leu Gly Phe Leu Gly Ala
Ala Gly Ser Thr Met Gly Ala Ala Ser Ile 515 520 525 Thr Leu Thr Val
Gln Ala Arg Leu Leu Leu Ser Gly Ile Val Gln Gln 530 535 540 Gln Asn
Asn Leu Leu Arg Ala Ile Glu Ala Gln Gln His Leu Leu Gln 545 550 555
560 Leu Thr Val Trp Gly Ile Lys Gln Leu Gln Thr Arg Ile Leu Ala Val
565 570 575 Glu Arg Tyr Leu Lys Asp Gln Gln Leu Leu Gly Ile Trp Gly
Cys Ser 580 585 590 Gly Lys Leu Ile Cys Thr Thr Ala Val Pro Trp Asn
Ser Ser Trp Ser 595 600 605 Asn Arg Ser His Asp Glu Ile Trp Asp Asn
Met Thr Trp Met Gln Trp 610 615 620 Asp Arg Glu Ile Asn Asn Tyr Thr
Asp Thr Ile Tyr Arg Leu Leu Glu 625 630 635 640 Glu Ser Gln Asn Gln
Gln Glu Lys Asn Glu Lys Asp Leu Leu Ala Leu 645 650 655 Asp Ser Trp
Gln Asn Leu Trp Asn Trp Phe Ser Ile Thr Asn Trp Leu 660 665 670 Trp
Tyr Ile Lys Ile Phe Ile Met Ile Val Gly Gly Leu Ile Gly Leu 675 680
685 Arg Ile Ile Phe Ala Val Leu Ser Ile Val Asn Arg Val Arg Gln Gly
690 695 700 Tyr Ser Pro Leu Pro Phe Gln Thr Leu Thr Pro Asn Pro Arg
Glu Pro 705 710 715 720 Asp Arg Leu Gly Arg Ile Glu Glu Glu Gly Gly
Glu Gln Asp Arg Gly 725 730 735 Arg Ser Ile Arg Leu Val Ser Gly Phe
Leu Ala Leu Ala Trp Asp Asp 740 745 750 Leu Arg Ser Leu Cys Leu Phe
Ser Tyr His Arg Leu Arg Asp Phe Ile 755 760 765 Leu Ile Ala Ala Arg
Val Leu Glu Leu Leu Gly Gln Arg Gly Trp Glu 770 775 780 Ala Leu Lys
Tyr Leu Gly Ser Leu Val Gln Tyr Trp Gly Leu Glu Leu 785 790 795 800
Lys Lys Ser Ala Ile Ser Leu Leu Asp Thr Ile Ala Ile Ala Val Ala 805
810 815 Glu Gly Thr Asp Arg Ile Ile Glu Phe Ile Gln Arg Ile Cys Arg
Ala 820 825 830 Ile Arg Asn Ile Pro Arg Arg Ile Arg Gln Gly Phe Glu
Ala Ala Leu 835 840 845 Gln 452550DNAArtificialdeoptimized HIV-1
ENV sequence 45atgcgtgtca tgggtatact caagaattat cagcaatggt
ggatgtgggg tatcctcggt 60ttttggatgc tcataatttc gtcggtcgtc ggtaacctct
gggtcacggt ctattatggt 120gtcccggtct ggaaagaagc gaaaacgacg
ctcttctgta cgtcggatgc gaaagcgtat 180gagacggagg tccataatgt
ctgggcgacg catgcgtgtg tcccgacgga cccgaacccg 240caagaaatag
tcctcgaaaa tgtcacggaa aattttaaca tgtggaaaaa tgacatggtc
300gatcagatgc atgaggatat aatctcgctc tgggaccaat cgctcaagcc
gtgtgtcaag 360ctcacgccgc tctgtgtcac gctcaaatgt cgtaatgtca
atgcgacgaa caatattaat 420tcgatgattg ataactcgaa taagggtgaa
atgaaaaatt gctcgttcaa tgtcacgacg 480gaactccgtg atcgtaaaca
ggaagtccat gcgctctttt atcgtctcga tgtcgtcccg 540ctccagggta
acaactcgaa tgagtatcgt ctcataaatt gtaatacgtc ggcgataacg
600caagcgtgtc cgaaggtctc gtttgatccg attccgatac attattgtac
gccggcgggt 660tatgcgattc tcaagtgtaa taatcagacg ttcaatggta
cgggtccgtg caataatgtc 720tcgtcggtcc aatgtgcgca tggtattaag
ccggtcgtct cgacgcagct cctcctcaat 780ggttcggtcg cgaaaggtga
gataataatt cgttcggaaa atctcacgaa caatgcgaaa 840ataataatag
tccaactcaa taaaccggtc aaaattgtct gtgtccgtcc gaacaataat
900acgcgtaaat cggtccgtat aggtccgggt caaacgttct atgcgacggg
tgaaataata 960ggtgacatac gtcaagcgta ttgtatcatt aataaaacgg
aatggaattc gacgctccaa 1020ggtgtctcga aaaaactcga agaacacttc
tcgaaaaaag cgataaaatg tgaaccgtcg 1080tcgggtggtg acctcgaaat
tacgacgcat tcgtttaatt gtcgtggtga atttttctat 1140tgcgacacgt
ctcaactctt taattcgacg tactcgccgt cgtttaatgg tacggaaaat
1200aaactcaacg gtacgatcac gatcacgtgt cgtataaaac aaattataaa
catgtggcaa 1260aaggtcggtc gtgcgatgta tgcgccgccg attgcgggta
acctcacgtg tgaatcggat 1320atcacgggtc tcctcctcac gcgtgatggt
ggtaaaacgg gtccgaatga cacggagata 1380ttccgtccgg gtggtggtga
tatgcgtgac aactggcgta atgaactcta taaatataaa 1440gtcgtcgaaa
ttaagccgct cggtgtcgcg ccgacggagg cgaaacgtcg tgtcgtcgag
1500cgtgaaaaac gtgcggtcgg tataggtgcg gtctgcctcg gtttcctcgg
tgcggcgggt 1560tcgacgatgg gtgcggcgtc gataacgctc acggtccagg
cgcgtctcct cctctcgggt 1620atagtccagc agcaaaacaa tctcctccgt
gcgatagagg cgcaacagca tctcctccaa 1680ctcacggtct ggggtattaa
gcagctccag acgcgtatcc tcgcggtcga acgttacctc 1740aaggatcaac
agctcctcgg tatttggggt tgctcgggta aactcatctg cacgacggcg
1800gtcccgtgga actcgtcgtg gtcgaatcgt tcgcatgatg agatttggga
taacatgacg 1860tggatgcagt gggatcgtga aattaataat tacacggaca
cgatataccg tctcctcgaa 1920gaatcgcaaa accagcagga gaaaaatgaa
aaggatctcc tcgcgctcga ctcgtggcaa 1980aatctctgga attggttttc
gataacgaat tggctctggt atataaaaat attcataatg 2040atagtcggtg
gtctcatagg tctccgtata atttttgcgg tcctctcgat agtcaatcgt
2100gtccgtcagg gttactcgcc gctcccgttt cagacgctca cgccgaaccc
gcgtgaaccg 2160gaccgtctcg gtcgtatcga agaagaaggt ggtgagcaag
accgtggtag ttcgattcgt 2220ctcgtctcgg gtttcctcgc gctcgcgtgg
gacgacctcc gttcgctctg cctcttctcg 2280taccaccgtc tccgtgactt
catactcatt gcggcgcgtg tcctcgaact cctcggtcag 2340cgtggttggg
aagcgctcaa atatctcggt tcgctcgtcc agtattgggg tctcgagctc
2400aaaaagtcgg cgatttcgct cctcgatacg atagcgatag cggtcgcgga
aggtacggat 2460cgtattatag aattcataca acgtatttgt cgtgcgattc
gtaacatacc gcgtcgtata 2520cgtcagggtt ttgaagcggc gctccaataa
2550461734DNAEscherichia coliCDS(1)..(1734) 46gtg aat att cag gct
ctt ctc tca gaa aaa gtc cgt cag gcc atg att 48Val Asn Ile Gln Ala
Leu Leu Ser Glu Lys Val Arg Gln Ala Met Ile 1 5 10 15 gcg gca ggc
gcg cct gcg gat tgc gaa ccg cag gtt cgt cag tca gca 96Ala Ala Gly
Ala Pro Ala Asp Cys Glu Pro Gln Val Arg Gln Ser Ala 20 25 30 aaa
gtt cag ttc ggc gac tat cag gct aac ggc atg atg gca gtt gct 144Lys
Val Gln Phe Gly Asp Tyr Gln Ala Asn Gly Met Met Ala Val Ala 35 40
45 aaa aaa ctg ggt atg gca ccg cga caa tta gca gag cag gtg ctg act
192Lys Lys Leu Gly Met Ala Pro Arg Gln Leu Ala Glu Gln Val Leu Thr
50 55 60 cat ctg gat ctt aac ggt atc gcc agc aaa gtt gag atc gcc
ggt cca 240His Leu Asp Leu Asn Gly Ile Ala Ser Lys Val Glu Ile Ala
Gly Pro 65 70 75 80 ggc ttt atc aac att ttc ctt gat ccg gca ttc ctg
gct gaa cat gtt 288Gly Phe Ile Asn Ile Phe Leu Asp Pro Ala Phe Leu
Ala Glu His Val 85 90 95 cag cag gcg ctg gcg tcc gat cgt ctc ggt
gtt gct acg cca gaa aaa 336Gln Gln Ala Leu Ala Ser Asp Arg Leu Gly
Val Ala Thr Pro Glu Lys 100 105 110 cag acc att gtg gtt gac tac tct
gcg cca aac gtg gcg aaa gag atg 384Gln Thr Ile Val Val Asp Tyr Ser
Ala Pro Asn Val Ala Lys Glu Met 115 120 125 cat gtc ggt cac ctg cgc
tct acc att att ggt gac gca gca gtg cgt 432His Val Gly His Leu Arg
Ser Thr Ile Ile Gly Asp Ala Ala Val Arg 130 135 140 act ctg gag ttc
ctc ggt cac aaa gtg att cgc gca aac cac gtc ggc 480Thr Leu Glu Phe
Leu Gly His Lys Val Ile Arg Ala Asn His Val Gly 145 150 155 160 gac
tgg ggc act cag ttc ggt atg ctg att gca tgg ctg gaa aag cag 528Asp
Trp Gly Thr Gln Phe Gly Met Leu Ile Ala Trp Leu Glu Lys Gln 165 170
175 cag cag gaa aac gcc ggt gaa atg gag ctg gct gac ctt gaa ggt ttc
576Gln Gln Glu Asn Ala Gly Glu Met Glu Leu Ala Asp Leu Glu Gly Phe
180 185 190 tac cgc gat gcg aaa aag cat tac gat gaa gat gaa gag ttc
gcc gag 624Tyr Arg Asp Ala Lys Lys His Tyr Asp Glu Asp Glu Glu Phe
Ala Glu 195 200 205 cgc gca cgt aac tac gtg gta aaa ctg caa agc ggt
gac gaa tat ttc 672Arg Ala Arg Asn Tyr Val Val Lys Leu Gln Ser Gly
Asp Glu Tyr Phe 210 215 220 cgc gag atg tgg cgc aaa ctg gtc gac atc
acc atg acg cag aac cag 720Arg Glu Met Trp Arg Lys Leu Val Asp Ile
Thr Met Thr Gln Asn Gln 225 230 235 240 atc acc tac gat cgt ctc aac
gtg acg ctg acc cgt gat gac gtg atg 768Ile Thr Tyr Asp Arg Leu Asn
Val Thr Leu Thr Arg Asp Asp Val Met 245 250 255 ggc gaa agc ctc tac
aac ccg atg ctg cca gga att gtg gcg gat ctc 816Gly Glu Ser Leu Tyr
Asn Pro Met Leu Pro Gly Ile Val Ala Asp Leu 260 265 270 aaa gcc aaa
ggt ctg gca gta gaa agc gaa ggg gcg acc gtc gta ttc 864Lys Ala Lys
Gly Leu Ala Val Glu Ser Glu Gly Ala Thr Val Val Phe 275 280 285 ctt
gat gag ttt aaa aac aag gaa ggc gaa ccg atg ggc gtg atc att 912Leu
Asp Glu Phe Lys Asn Lys Glu Gly Glu Pro Met Gly Val Ile Ile 290 295
300 cag aag aaa gat ggc ggc tat ctc tac acc acc act gat atc gcc tgt
960Gln Lys Lys Asp Gly Gly Tyr Leu Tyr Thr Thr Thr Asp Ile Ala Cys
305 310 315 320 gcg aaa tat cgt tat gaa aca ctg cat gcc gat cgc gtg
ctg tat tac 1008Ala Lys Tyr Arg Tyr Glu Thr Leu His Ala Asp Arg Val
Leu Tyr Tyr 325 330 335 atc gac tcc cgt cag cat caa cac ctg atg cag
gca tgg gcg atc gtc 1056Ile Asp Ser Arg Gln His Gln His Leu Met Gln
Ala Trp Ala Ile Val 340 345 350 cgt aaa gca ggc tat gta ccg gaa tcc
gta ccg ctg gaa cac cac atg 1104Arg Lys Ala Gly Tyr Val Pro Glu Ser
Val Pro Leu Glu His His Met 355 360 365 ttc ggc atg atg ctg ggt aaa
gac ggc aaa ccg ttc aaa acc cgc gcg 1152Phe Gly Met Met Leu Gly Lys
Asp Gly Lys Pro Phe Lys Thr Arg Ala 370 375 380 ggt ggt aca gtg aaa
ctg gcc gat ctg ctg gat gaa gcc ctg gaa cgt 1200Gly Gly Thr Val Lys
Leu Ala Asp Leu Leu Asp Glu Ala Leu Glu Arg 385 390 395 400 gca cgc
cgt ctg gtg gca gaa aag aac ccg gat atg cca gcc gac gag 1248Ala Arg
Arg Leu Val Ala Glu Lys Asn Pro Asp Met Pro Ala Asp Glu 405 410 415
ctg gaa aaa ctg gct aac gcg gtt ggt att ggt gcg gtg aaa tat gcg
1296Leu Glu Lys Leu Ala Asn Ala Val Gly Ile Gly Ala Val Lys Tyr Ala
420 425 430 gat ctc tcc aaa aac cgc acc acg gac tac atc ttc gac tgg
gac aac 1344Asp Leu Ser Lys Asn Arg Thr Thr Asp Tyr Ile Phe Asp Trp
Asp Asn 435 440 445 atg ctg gcg ttt gag ggt aat acc gcg cca tac atg
cag tat gca tac 1392Met Leu Ala Phe Glu Gly Asn Thr Ala Pro Tyr Met
Gln Tyr Ala Tyr 450 455 460 acg cgt gta ttg tcc gtg ttc cgt aaa gca
gaa att gac gaa gag caa 1440Thr Arg Val Leu Ser Val Phe Arg Lys Ala
Glu Ile Asp Glu Glu Gln 465 470 475 480 ctg gct gca gct ccg gtt atc
atc cgt gaa gat cgt gaa gcg caa ctg 1488Leu Ala Ala Ala Pro Val Ile
Ile Arg Glu Asp Arg Glu Ala Gln Leu 485 490 495 gca gct cgc ctg ctg
cag ttt gaa gaa acc ctc acc gtg gtt gcc cgt 1536Ala Ala Arg Leu Leu
Gln Phe Glu Glu Thr Leu Thr Val Val Ala Arg 500 505 510 gaa ggc acg
ccg cat gta atg tgt gct tac ctg tac gat ctg gcc ggt 1584Glu Gly Thr
Pro His Val Met Cys Ala Tyr Leu Tyr Asp Leu Ala Gly 515 520 525 ctg
ttc tct ggc ttc tac gag cac tgc ccg atc ctc agc gca gaa aac 1632Leu
Phe Ser Gly Phe Tyr Glu His Cys Pro Ile Leu Ser Ala Glu Asn 530 535
540 gaa gaa gtg cgt aac agc cgt cta aaa ctg gca caa ctg acg gcg aag
1680Glu Glu Val Arg Asn Ser Arg Leu Lys Leu Ala Gln Leu Thr Ala Lys
545 550 555 560 acg ctg aag ctg ggt ctg gat acg ctg ggt att gag act
gta gag cgt 1728Thr Leu Lys Leu Gly Leu Asp Thr Leu Gly Ile Glu Thr
Val Glu Arg 565 570 575 atg taa 1734Met 47577PRTEscherichia coli
47Val Asn Ile Gln Ala Leu Leu Ser Glu Lys Val Arg Gln Ala Met Ile 1
5 10 15 Ala Ala Gly Ala Pro Ala Asp Cys Glu Pro Gln Val Arg Gln Ser
Ala 20 25 30 Lys Val Gln Phe Gly Asp Tyr Gln Ala Asn Gly Met Met
Ala Val Ala 35 40 45 Lys Lys Leu Gly Met Ala Pro Arg Gln Leu Ala
Glu Gln Val Leu Thr 50 55 60 His Leu Asp Leu Asn Gly Ile Ala Ser
Lys Val Glu Ile Ala Gly Pro 65 70 75 80 Gly Phe Ile Asn Ile Phe Leu
Asp Pro Ala Phe Leu Ala Glu His Val
85 90 95 Gln Gln Ala Leu Ala Ser Asp Arg Leu Gly Val Ala Thr Pro
Glu Lys 100 105 110 Gln Thr Ile Val Val Asp Tyr Ser Ala Pro Asn Val
Ala Lys Glu Met 115 120 125 His Val Gly His Leu Arg Ser Thr Ile Ile
Gly Asp Ala Ala Val Arg 130 135 140 Thr Leu Glu Phe Leu Gly His Lys
Val Ile Arg Ala Asn His Val Gly 145 150 155 160 Asp Trp Gly Thr Gln
Phe Gly Met Leu Ile Ala Trp Leu Glu Lys Gln 165 170 175 Gln Gln Glu
Asn Ala Gly Glu Met Glu Leu Ala Asp Leu Glu Gly Phe 180 185 190 Tyr
Arg Asp Ala Lys Lys His Tyr Asp Glu Asp Glu Glu Phe Ala Glu 195 200
205 Arg Ala Arg Asn Tyr Val Val Lys Leu Gln Ser Gly Asp Glu Tyr Phe
210 215 220 Arg Glu Met Trp Arg Lys Leu Val Asp Ile Thr Met Thr Gln
Asn Gln 225 230 235 240 Ile Thr Tyr Asp Arg Leu Asn Val Thr Leu Thr
Arg Asp Asp Val Met 245 250 255 Gly Glu Ser Leu Tyr Asn Pro Met Leu
Pro Gly Ile Val Ala Asp Leu 260 265 270 Lys Ala Lys Gly Leu Ala Val
Glu Ser Glu Gly Ala Thr Val Val Phe 275 280 285 Leu Asp Glu Phe Lys
Asn Lys Glu Gly Glu Pro Met Gly Val Ile Ile 290 295 300 Gln Lys Lys
Asp Gly Gly Tyr Leu Tyr Thr Thr Thr Asp Ile Ala Cys 305 310 315 320
Ala Lys Tyr Arg Tyr Glu Thr Leu His Ala Asp Arg Val Leu Tyr Tyr 325
330 335 Ile Asp Ser Arg Gln His Gln His Leu Met Gln Ala Trp Ala Ile
Val 340 345 350 Arg Lys Ala Gly Tyr Val Pro Glu Ser Val Pro Leu Glu
His His Met 355 360 365 Phe Gly Met Met Leu Gly Lys Asp Gly Lys Pro
Phe Lys Thr Arg Ala 370 375 380 Gly Gly Thr Val Lys Leu Ala Asp Leu
Leu Asp Glu Ala Leu Glu Arg 385 390 395 400 Ala Arg Arg Leu Val Ala
Glu Lys Asn Pro Asp Met Pro Ala Asp Glu 405 410 415 Leu Glu Lys Leu
Ala Asn Ala Val Gly Ile Gly Ala Val Lys Tyr Ala 420 425 430 Asp Leu
Ser Lys Asn Arg Thr Thr Asp Tyr Ile Phe Asp Trp Asp Asn 435 440 445
Met Leu Ala Phe Glu Gly Asn Thr Ala Pro Tyr Met Gln Tyr Ala Tyr 450
455 460 Thr Arg Val Leu Ser Val Phe Arg Lys Ala Glu Ile Asp Glu Glu
Gln 465 470 475 480 Leu Ala Ala Ala Pro Val Ile Ile Arg Glu Asp Arg
Glu Ala Gln Leu 485 490 495 Ala Ala Arg Leu Leu Gln Phe Glu Glu Thr
Leu Thr Val Val Ala Arg 500 505 510 Glu Gly Thr Pro His Val Met Cys
Ala Tyr Leu Tyr Asp Leu Ala Gly 515 520 525 Leu Phe Ser Gly Phe Tyr
Glu His Cys Pro Ile Leu Ser Ala Glu Asn 530 535 540 Glu Glu Val Arg
Asn Ser Arg Leu Lys Leu Ala Gln Leu Thr Ala Lys 545 550 555 560 Thr
Leu Lys Leu Gly Leu Asp Thr Leu Gly Ile Glu Thr Val Glu Arg 565 570
575 Met 481734DNAArtificialdeoptimized E. coli ArgS sequence.
48gtgaatattc aggctcttct ctcagaaaaa gtcaggcagg ccatgattgc ggcaggcgcg
60cctgcggatt gcgaaccgca ggttaggcag tcagcaaaag ttcagttcgg cgactatcag
120gctaacggca tgatggcagt tgctaaaaaa ctgggtatgg caccgaggca
attagcagag 180caggtgctga ctcatctgga tcttaacggt atcgccagca
aagttgagat cgccggtcca 240ggctttatca acattttcct tgatccggca
ttcctggctg aacatgttca gcaggcgctg 300gcgtccgata ggctcggtgt
tgctacgcca gaaaaacaga ccattgtggt tgactactct 360gaggcaaacg
tggcgaaaga gatgcatgtc ggtcacctgc gctctaccat tattggtgac
420gcagcagtga ggactctgga gttcctcggt cacaaagtga ttagggcaaa
ccacgtcggc 480gactggggca ctcagttcgg tatgctgatt gcatggctgg
aaaagcagca gcaggaaaac 540gccggtgaaa tggagctggc tgaccttgaa
ggtttctaca gggatgcgaa aaagcattac 600gatgaagatg aagagttcgc
cgagagggca aggaactacg tggtaaaact gcaaagcggt 660gacgaatatt
tcagggagat gtggaggaaa ctggtcgaca tcaccatgac gcagaaccag
720atcacctacg ataggctcaa cgtgacgctg accagggatg acgtgatggg
cgaaagcctc 780tacaacccga tgctgccagg aattgtggcg gatctcaaag
ccaaaggtct ggcagtagaa 840agcgaagggg cgaccgtcgt attccttgat
gagtttaaaa acaaggaagg cgaaccgatg 900ggcgtgatca ttcagaagaa
agatggcggc tatctctaca ccaccactga tatcgcctgt 960gcgaaatata
ggtatgaaac actgcatgcc gatagggtgc tgtattacat cgactccagg
1020cagcatcaac acctgatgca ggcatgggcg atcgtcagga aagcaggcta
tgtaccggaa 1080tccgtaccgc tggaacacca catgttcggc atgatgctgg
gtaaagacgg caaaccgttc 1140aaaaccaggg cgggtggtac agtgaaactg
gccgatctgc tggatgaagc cctggaaagg 1200gcaaggaggc tggtggcaga
aaagaacccg gatatgccag ccgacgagct ggaaaaactg 1260gctaacgcgg
ttggtattgg tgcggtgaaa tatgcggatc tctccaaaaa caggaccacg
1320gactacatct tcgactggga caacatgctg gcgtttgagg gtaataccgc
gccatacatg 1380cagtatgcat acacgagggt attgtccgtg ttcaggaaag
cagaaattga cgaagagcaa 1440ctggctgcag ctccggttat catcagggaa
gatagggaag cgcaactggc agctaggctg 1500ctgcagtttg aagaaaccct
caccgtggtt gccagggaag gcacgccgca tgtaatgtgt 1560gcttacctgt
acgatctggc cggtctgttc tctggcttct acgagcactg cccgatcctc
1620agcgcagaaa acgaagaagt gaggaacagc aggctaaaac tggcacaact
gacggcgaag 1680acgctgaagc tgggtctgga tacgctgggt attgagactg
tagagaggat gtaa 1734491185DNAEscherichia coliCDS(1)..(1185) 49gtg
tct aaa gaa aaa ttt gaa cgt aca aaa ccg cac gtt aac gtt ggt 48Val
Ser Lys Glu Lys Phe Glu Arg Thr Lys Pro His Val Asn Val Gly 1 5 10
15 act atc ggc cac gtt gac cac ggt aaa act act ctg acc gct gca atc
96Thr Ile Gly His Val Asp His Gly Lys Thr Thr Leu Thr Ala Ala Ile
20 25 30 acc acc gta ctg gct aaa acc tac ggc ggt gct gct cgt gca
ttc gac 144Thr Thr Val Leu Ala Lys Thr Tyr Gly Gly Ala Ala Arg Ala
Phe Asp 35 40 45 cag atc gat aac gcg ccg gaa gaa aaa gct cgt ggt
atc acc atc aac 192Gln Ile Asp Asn Ala Pro Glu Glu Lys Ala Arg Gly
Ile Thr Ile Asn 50 55 60 act tct cac gtt gaa tac gac acc ccg acc
cgt cac tac gca cac gta 240Thr Ser His Val Glu Tyr Asp Thr Pro Thr
Arg His Tyr Ala His Val 65 70 75 80 gac tgc ccg ggg cac gcc gac tat
gtt aaa aac atg atc acc ggt gct 288Asp Cys Pro Gly His Ala Asp Tyr
Val Lys Asn Met Ile Thr Gly Ala 85 90 95 gct cag atg gac ggc gcg
atc ctg gta gtt gct gcg act gac ggc ccg 336Ala Gln Met Asp Gly Ala
Ile Leu Val Val Ala Ala Thr Asp Gly Pro 100 105 110 atg ccg cag act
cgt gag cac atc ctg ctg ggt cgt cag gta ggc gtt 384Met Pro Gln Thr
Arg Glu His Ile Leu Leu Gly Arg Gln Val Gly Val 115 120 125 ccg tac
atc atc gtg ttc ctg aac aaa tgc gac atg gtt gat gac gaa 432Pro Tyr
Ile Ile Val Phe Leu Asn Lys Cys Asp Met Val Asp Asp Glu 130 135 140
gag ctg ctg gaa ctg gtt gaa atg gaa gtt cgt gaa ctt ctg tct cag
480Glu Leu Leu Glu Leu Val Glu Met Glu Val Arg Glu Leu Leu Ser Gln
145 150 155 160 tac gac ttc ccg ggc gac gac act ccg atc gtt cgt ggt
tct gct ctg 528Tyr Asp Phe Pro Gly Asp Asp Thr Pro Ile Val Arg Gly
Ser Ala Leu 165 170 175 aaa gcg ctg gaa ggc gac gca gag tgg gaa gcg
aaa atc ctg gaa ctg 576Lys Ala Leu Glu Gly Asp Ala Glu Trp Glu Ala
Lys Ile Leu Glu Leu 180 185 190 gct ggc ttc ctg gat tct tat att ccg
gaa cca gag cgt gcg att gac 624Ala Gly Phe Leu Asp Ser Tyr Ile Pro
Glu Pro Glu Arg Ala Ile Asp 195 200 205 aag ccg ttc ctg ctg ccg atc
gaa gac gta ttc tcc atc tcc ggt cgt 672Lys Pro Phe Leu Leu Pro Ile
Glu Asp Val Phe Ser Ile Ser Gly Arg 210 215 220 ggt acc gtt gtt acc
ggt cgt gta gaa cgc ggt atc atc aaa gtt ggt 720Gly Thr Val Val Thr
Gly Arg Val Glu Arg Gly Ile Ile Lys Val Gly 225 230 235 240 gaa gaa
gtt gaa atc gtt ggt atc aaa gag act cag aag tct acc tgt 768Glu Glu
Val Glu Ile Val Gly Ile Lys Glu Thr Gln Lys Ser Thr Cys 245 250 255
act ggc gtt gaa atg ttc cgc aaa ctg ctg gac gaa ggc cgt gct ggt
816Thr Gly Val Glu Met Phe Arg Lys Leu Leu Asp Glu Gly Arg Ala Gly
260 265 270 gag aac gta ggt gtt ctg ctg cgt ggt atc aaa cgt gaa gaa
atc gaa 864Glu Asn Val Gly Val Leu Leu Arg Gly Ile Lys Arg Glu Glu
Ile Glu 275 280 285 cgt ggt cag gta ctg gct aag ccg ggc acc atc aag
ccg cac acc aag 912Arg Gly Gln Val Leu Ala Lys Pro Gly Thr Ile Lys
Pro His Thr Lys 290 295 300 ttc gaa tct gaa gtg tac att ctg tcc aaa
gat gaa ggc ggc cgt cat 960Phe Glu Ser Glu Val Tyr Ile Leu Ser Lys
Asp Glu Gly Gly Arg His 305 310 315 320 act ccg ttc ttc aaa ggc tac
cgt ccg cag ttc tac ttc cgt act act 1008Thr Pro Phe Phe Lys Gly Tyr
Arg Pro Gln Phe Tyr Phe Arg Thr Thr 325 330 335 gac gtg act ggt acc
atc gaa ctg ccg gaa ggc gta gag atg gta atg 1056Asp Val Thr Gly Thr
Ile Glu Leu Pro Glu Gly Val Glu Met Val Met 340 345 350 ccg ggc gac
aac atc aaa atg gtt gtt acc ctg atc cac ccg atc gcg 1104Pro Gly Asp
Asn Ile Lys Met Val Val Thr Leu Ile His Pro Ile Ala 355 360 365 atg
gac gac ggt ctg cgt ttc gca atc cgt gaa ggc ggc cgt acc gtt 1152Met
Asp Asp Gly Leu Arg Phe Ala Ile Arg Glu Gly Gly Arg Thr Val 370 375
380 ggc gcg ggc gtt gtt gct aaa gtt ctg ggc taa 1185Gly Ala Gly Val
Val Ala Lys Val Leu Gly 385 390 50394PRTEscherichia coli 50Val Ser
Lys Glu Lys Phe Glu Arg Thr Lys Pro His Val Asn Val Gly 1 5 10 15
Thr Ile Gly His Val Asp His Gly Lys Thr Thr Leu Thr Ala Ala Ile 20
25 30 Thr Thr Val Leu Ala Lys Thr Tyr Gly Gly Ala Ala Arg Ala Phe
Asp 35 40 45 Gln Ile Asp Asn Ala Pro Glu Glu Lys Ala Arg Gly Ile
Thr Ile Asn 50 55 60 Thr Ser His Val Glu Tyr Asp Thr Pro Thr Arg
His Tyr Ala His Val 65 70 75 80 Asp Cys Pro Gly His Ala Asp Tyr Val
Lys Asn Met Ile Thr Gly Ala 85 90 95 Ala Gln Met Asp Gly Ala Ile
Leu Val Val Ala Ala Thr Asp Gly Pro 100 105 110 Met Pro Gln Thr Arg
Glu His Ile Leu Leu Gly Arg Gln Val Gly Val 115 120 125 Pro Tyr Ile
Ile Val Phe Leu Asn Lys Cys Asp Met Val Asp Asp Glu 130 135 140 Glu
Leu Leu Glu Leu Val Glu Met Glu Val Arg Glu Leu Leu Ser Gln 145 150
155 160 Tyr Asp Phe Pro Gly Asp Asp Thr Pro Ile Val Arg Gly Ser Ala
Leu 165 170 175 Lys Ala Leu Glu Gly Asp Ala Glu Trp Glu Ala Lys Ile
Leu Glu Leu 180 185 190 Ala Gly Phe Leu Asp Ser Tyr Ile Pro Glu Pro
Glu Arg Ala Ile Asp 195 200 205 Lys Pro Phe Leu Leu Pro Ile Glu Asp
Val Phe Ser Ile Ser Gly Arg 210 215 220 Gly Thr Val Val Thr Gly Arg
Val Glu Arg Gly Ile Ile Lys Val Gly 225 230 235 240 Glu Glu Val Glu
Ile Val Gly Ile Lys Glu Thr Gln Lys Ser Thr Cys 245 250 255 Thr Gly
Val Glu Met Phe Arg Lys Leu Leu Asp Glu Gly Arg Ala Gly 260 265 270
Glu Asn Val Gly Val Leu Leu Arg Gly Ile Lys Arg Glu Glu Ile Glu 275
280 285 Arg Gly Gln Val Leu Ala Lys Pro Gly Thr Ile Lys Pro His Thr
Lys 290 295 300 Phe Glu Ser Glu Val Tyr Ile Leu Ser Lys Asp Glu Gly
Gly Arg His 305 310 315 320 Thr Pro Phe Phe Lys Gly Tyr Arg Pro Gln
Phe Tyr Phe Arg Thr Thr 325 330 335 Asp Val Thr Gly Thr Ile Glu Leu
Pro Glu Gly Val Glu Met Val Met 340 345 350 Pro Gly Asp Asn Ile Lys
Met Val Val Thr Leu Ile His Pro Ile Ala 355 360 365 Met Asp Asp Gly
Leu Arg Phe Ala Ile Arg Glu Gly Gly Arg Thr Val 370 375 380 Gly Ala
Gly Val Val Ala Lys Val Leu Gly 385 390
511185DNAArtificialdeoptimized E. coli TufA sequence. 51gtgtctaaag
aaaaatttga aaggacaaaa ccgcacgtta acgttggtac tatcggccac 60gttgaccacg
gtaaaactac tctgaccgct gcaatcacca ccgtactggc taaaacctac
120ggcggtgctg ctagggcatt cgaccagatc gataacgcgc cggaagaaaa
agctaggggt 180atcaccatca acacttctca cgttgaatac gacaccccga
ccaggcacta cgcacacgta 240gactgcccgg ggcacgccga ctatgttaaa
aacatgatca ccggtgctgc tcagatggac 300ggcgcgatcc tggtagttgc
tgcgactgac ggcccgatgc cgcagactag ggagcacatc 360ctgctgggta
ggcaggtagg cgttccgtac atcatcgtgt tcctgaacaa atgcgacatg
420gttgatgacg aagagctgct ggaactggtt gaaatggaag ttagggaact
tctgtctcag 480tacgacttcc cgggcgacga cactccgatc gttaggggtt
ctgctctgaa agcgctggaa 540ggcgacgcag agtgggaagc gaaaatcctg
gaactggctg gcttcctgga ttcttatatt 600ccggaaccag agagggcgat
tgacaagccg ttcctgctgc cgatcgaaga cgtattctcc 660atctccggta
ggggtaccgt tgttaccggt agggtagaaa ggggtatcat caaagttggt
720gaagaagttg aaatcgttgg tatcaaagag actcagaagt ctacctgtac
tggcgttgaa 780atgttcacga aactgctgga cgaaggcagg gctggtgaga
acgtaggtgt tctgctgagg 840ggtatcaaaa gggaagaaat cgaaaggggt
caggtactgg ctaagccggg caccatcaag 900ccgcacacca agttcgaatc
tgaagtgtac attctgtcca aagatgaagg cggcaggcat 960actccgttct
tcaaaggcta caggccgcag ttctacttca ggactactga cgtgactggt
1020accatcgaac tgccggaagg cgtagagatg gtaatgccgg gcgacaacat
caaaatggtt 1080gttaccctga tccacccgat cgcgatggac gacggtctga
ggttcgcaat cagggaaggc 1140ggcaggaccg ttggcgcggg cgttgttgct
aaagttctgg gctaa 1185527439DNAHuman poliovirus 2 52ttaaaacagc
tctggggttg ttcccacccc agaggcccac gtggcggcca gtacactggt 60attgcggtac
ctttgtacgc ctgttttata ctcccttccc ccgtaactta gaagcacaat
120gtccaagttc aataggaggg ggtacaaacc agtaccacca cgaacaagca
cttctgttcc 180cccggtgagg ctgtataggc tgtttccacg gctaaaagcg
gctgatccgt tatccgctca 240tgtacttcga gaagcctagt atcaccttgg
aatcttcgat gcgttgcgct caacactcaa 300ccccagagtg tagcttaggt
cgatgagtct ggacgttcct caccggcgac ggtggtccag 360gctgcgttgg
cggcctacct gtggcccaaa gccacaggac gctagttgtg aacaaggtgt
420gaagagccta ttgagctacc tgagagtcct ccggcccctg aatgcggcta
atcctaacca 480cggagcaggc agtggcaatc cagcgaccag cctgtcgtaa
cgcgcaagtt cgtggcggaa 540ccgactactt tgggtgtccg tgtttccttt
tatttttaca atggctgctt atggtgacaa 600tcattgattg ttatcataaa
gcaaattgga ttggccatcc ggtgagaatt tgattattaa 660attactctct
tgttgggatt gctcctttga aatcctgtgc actcacacct attggaatta
720cctcattgtt aagatatcat caccactatg ggcgcccaag tctcatcaca
gaaagttgga 780gcccatgaga attcaaacag agcttatggc ggatccacca
ttaattacac tactattaat 840tattacaggg attctgcgag caatgccgct
agtaagcagg actttgcaca agacccatcc 900aagttcactg aacctattaa
agatgttctc attaagaccg ctcccacgct aaactctcct 960aatatcgagg
cgtgtgggta tagcgacaga gtgatgcaac taaccctagg caattccacc
1020attaccacac aggaggcggc caattctgtc gttgcatacg gccggtggcc
cgagtacatc 1080aaggactcag aagcaaatcc tgtggaccag ccaactgaac
cggacgttgc cgcgtgcagg 1140ttttacacac tagacactgt tacttggcgc
aaggagtcca gagggtggtg gtggaaactg 1200cctgatgcac taaaggacat
gggattattc ggccagaaca tgttctacca ctacctcggg 1260agggctggct
atactgtgca cgtacagtgt aatgcttcaa agtttcacca gggcgccctc
1320ggggtattcg cagttccaga aatgtgcctg gcaggcgaca gcacaaccca
catgtttaca 1380aaatatgaga atgcaaatcc gggtgagaaa gggggtgaat
tcaaagggag ttttactctg 1440gatactaacg ctaccaaccc tgcacgcaac
ttttgtcccg ttgattatct cttcgggagc 1500ggagtactgg cgggaaatgc
gtttgtttac ccacatcaga taattaatct gcgcaccaac 1560aactgtgcca
cgttggtgct gccatacgtt aattcacttt ccatagacag catgacaaaa
1620cacaacaatt ggggaattgc tatccttccg ctggcaccac ttgactttgc
caccgagtcc 1680tccactgaga tacccattac tctaactatt
gcccctatgt gttgtgaatt caatgggttg 1740cgcaacatca ctgtacccag
aactcaaggg ttgccagtct taaacactcc aggaagcaac 1800cagtacttaa
cagcagacaa ctatcaatcc ccatgtgcga tacccgagtt tgatgtaaca
1860ccacccatag acatcccggg ggaagtgcgc aacatgatgg aattggcaga
gatagacacc 1920atgatacctc tcaatctgac gaaccagcgc aagaacacca
tggatatgta cagagtcgaa 1980ctgaatgatg cggctcactc tgacacacca
atattgtgtc tctcactgtc tccagcatca 2040gatcctaggc tagcacacac
tatgctaggt gaaatactga actactacac acactgggca 2100gggtcattga
agttcacatt tctcttctgc ggctcaatga tggccactgg taaattgcta
2160gtgtcctatg cacctcctgg tgcggaagcc cctaaaagcc gcaaagaagc
gatgctcggc 2220acccacgtga tctgggacat cggattacag tcatcatgca
ctatggtggt accttggatt 2280agcaacacca catacagaca aaccatcaac
gatagcttca cagaaggagg gtacatcagt 2340atgttttacc aaactagagt
tgttgtgcca ttgtccaccc ctagaaagat ggacatattg 2400ggctttgtgt
cagcctgcaa tgacttcagt gtgcgcctgt tgcgtgacac gacgcacata
2460agccaagagg ctatgccaca aggattgggt gatttaattg aaggggttgt
tgagggagtc 2520acgagaaatg ccttgacacc actgacacct gccaacaact
tgcctgatac acaatctagc 2580ggcccagccc actctaagga aacaccagcg
ctaacagccg tagagacagg ggccaccaac 2640ccattggtgc cttcagacac
ggtacaaact cgtcacgtca tccaaaagcg gacgcggtcg 2700gagtctacgg
ttgagtcttt cttcgcaaga ggagcttgtg tggccattat tgaagtggat
2760aatgatgctc caacaaagcg tgccagtaaa ttattttcag tctggaagat
aacttacaaa 2820gacaccgttc agttaagacg taagttggag ttctttacat
attcaaggtt tgacatggag 2880ttcacctttg tggttacatc caattatacc
gatgcaaaca atgggcacgc actaaatcaa 2940gtttaccaga taatgtacat
accacctggg gcaccgatcc ctggcaagtg gaatgattac 3000acatggcaaa
cgtcatctaa cccatcagtg ttttacactt acggggcacc tccagctaga
3060atatcagtgc cctacgtggg cattgccaat gcatattctc atttttacga
tgggtttgcc 3120aaagtaccac tagcaggcca agcctcaaca gagggtgact
cgctgtatgg agcggcttca 3180ttgaatgact tcggatcact ggctgttcga
gtggtgaatg accacaaccc tacgaaactc 3240acttcaaaaa tcagagtgta
catgaaacca aagcacgtca gagtgtggtg tccgcgaccc 3300cctcgagcag
tcccatacta cggaccaggg gttgactaca aggatggact agccccactg
3360ccagagaaag gcttgacaac ctatggtttt ggccaccaaa ataaggcagt
gtacacggca 3420ggttacaaaa tttgcaatta ccacctcgcc acccaggaag
acttacaaaa tgcggtaaac 3480attatgtgga ttagagacct tttagtagtg
gaatccaaag cccaaggcat agactcaatt 3540gctagatgta actgccacac
tggagtgtac tactgtgaat ccaggaggaa gtactacccg 3600gtctctttta
ctggccccac ctttcagtac atggaagcaa atgagtacta tccagcccga
3660taccaatccc acatgttaat tggccatggt tttgcatctc caggggactg
tggtgggatt 3720ctcaggtgcc aacatggagt aattggaatc attacagctg
gaggagaagg cctagtcgct 3780ttctcggaca tcagagatct gtacgcatac
gaggaggagg ctatggagca gggagtctcc 3840aactatattg agtcccttgg
ggctgcattt gggagtggat tcacccagca aataggaaac 3900aaaatttcag
aactcactag catggtcacc agcactataa ctgagaaact actaaagaat
3960ctcattaaaa taatttcatc ccttgttatc atcaccagaa actatgaaga
cacgaccaca 4020gtgctggcta cccttgctct cctcggttgt gatgcgtccc
catggcaatg gctaaagaag 4080aaagcctgtg acatcttgga aatcccctac
atcatgcgac agggcgatag ctggttgaag 4140aagtttacag aggcatgcaa
tgcagccaag ggattggaat gggtgtctaa taaaatatcc 4200aaatttattg
actggctcaa agagaagatc attccacagg ctagagacaa gctagagttt
4260gttaccaaac tgaagcaact agaaatgttg gagaaccaaa ttgcaaccat
tcatcaatcg 4320tgcccaagtc aggagcatca agaaatcctg ttcaataacg
tgagatggtt atccatacag 4380tcaaagagat ttgccccgct ctatgcggtt
gaggctaaga gaatacaaaa gttagagcac 4440acgattaaca actacgtaca
gttcaagagc aaacaccgta ttgaaccagt atgtttgttg 4500gtgcacggta
gcccaggcac gggcaagtca gttgccacca atttaattgc cagagcaata
4560gcagagaagg agaacacctc cacatactca ctaccaccag atccctccca
tttcgatggg 4620tacaagcaac aaggtgtggt gatcatggat gatttgaatc
agaacccaga cggagcagac 4680atgaagctgt tttgtcagat ggtctccact
gtagaattca taccaccaat ggcttcgcta 4740gaagaaaagg gtattttgtt
cacatctaat tacgttttgg cctcaaccaa ttccagtcgc 4800atcaccccac
caactgttgc gcacagcgat gccctagcca ggcgctttgc atttgacatg
4860gacatacaaa tcatgagcga gtattctaga gatggaaaat tgaacatggc
gatggcaact 4920gaaatgtgta agaactgtca tcaaccagca aacttcaaga
gatgttgccc attggtgtgt 4980ggcaaagcca tccagctgat ggacaaatct
tccagagtca gatatagtat agatcagatt 5040actaccatga ttattaatga
gaggaacaga agatcaagta tcggtaattg catggaggca 5100cttttccaag
gtcctcttca atacaaagac ctgaaaatag acattaagac cacacctcct
5160cctgagtgca tcaatgattt gctccaagca gttgattctc aagaggtaag
agactactgt 5220gagaagaagg gttggatagt agacatcact agtcaggtgc
aaaccgaaag aaacatcaat 5280agagcaatga ctattcttca ggcggtcacc
acatttgccg cagttgctgg agtggtgtat 5340gtgatgtaca aactctttgc
agggcatcaa ggagcgtata cagggcttcc caataagaga 5400cccaatgtcc
ccaccatcag gactgccaag gttcagggcc caggatttga ctacgcagtg
5460gcaatggcca aaagaaacat tcttacggca actaccatta agggagagtt
cacaatgctc 5520ggagtgcatg ataatgtggc cattctacca acccacgcat
caccgggtga aacaatagtc 5580attgatggca aggaagtaga ggtactggat
gctaaagccc tggaggacca ggccgggacc 5640aacctagaaa tcaccattgt
cactcttaag agaaatgaga agttcaggga catcagacca 5700cacatcccca
ctcaaatcac tgagacaaat gatggagttt taattgtgaa cactagtaag
5760taccccaaca tgtatgttcc tgtcggtgct gtgactgaac aggggtatct
caatctcggt 5820ggacgccaaa ctgctcgtac tttaatgtac aactttccaa
cgagagcagg tcaatgtggt 5880ggagttatca cctgcactgg caaggtcatc
gggatgcatg ttggtgggaa cggttcacat 5940gggttcgcag cagccctgaa
gcgatcctat ttcactcaga gtcaaggtga aatccagtgg 6000atgagaccat
caaaagaagt gggctacccc gttattaatg ctccatctaa aactaaactg
6060gaacccagtg cattccatta tgtgtttgaa ggtgtcaagg aaccagctgt
gctcaccaaa 6120agtgacccca gattgaagac agattttgaa gaggctatct
tttccaagta tgtgggaaat 6180aagattactg aagtggatga gtacatgaaa
gaagctgtcg atcattacgc aggccagctc 6240atgtcactag acatcaacac
agaacaaatg tgccttgagg atgcaatgta tggcactgac 6300ggtctcgaag
ctctagacct cagtaccagt gctgggtatc cctatgtggc aatggggaaa
6360aagaaaagag acattttgaa taagcaaacc agagacacaa aggaaatgca
aaggcttctg 6420gacacctatg gtattaattt acctttagtc acctatgtga
aagatgagct tagatccaag 6480accaaagtgg aacagggcaa gtccaggcta
attgaggcct caagtctcaa tgactctgtc 6540gccatgagga tggcttttgg
caacttgtac gcagcattcc acaagaaccc aggtgtagtg 6600acaggatcgg
ctgttggctg tgacccagat ttgttttgga gtaaaatacc agtcctcatg
6660gaggaaaaac tctttgcatt tgattacacg ggttatgatg cttcactaag
ccccgcctgg 6720tttgaggctc tcaagatggt tctagagaaa attgggtttg
gtgacagagt ggattacatt 6780gattatctga atcactcgca ccatctatat
aaaaataaga catattgtgt taagggcggc 6840atgccatctg gctgctctgg
cacctcaatt tttaattcaa tgattaataa tctaataatc 6900aggactctct
tactgaaaac ctacaagggc atagatttag accacctgaa gatgatagcc
6960tatggtgatg atgtaattgc ttcctacccc catgaggttg atgctagtct
cctagcccaa 7020tcaggaaaag actatggact aaccatgaca ccagctgaca
aatcagccac ctttgaaaca 7080gtcacatggg agaatgtaac attcttgaaa
agattcttta gagcagatga aaagtatccc 7140tttctggtac atccagtgat
gccaatgaaa gaaattcacg aatcaattag atggactaaa 7200gatcccagaa
acactcagga tcatgttcgc tcactgtgct tattggcttg gcacaatggc
7260gaggaagagt acaataaatt tttagctaag attagaagtg tgccaatcgg
aagagcatta 7320ctgctccctg agtactccac attgtaccgc cgttggctcg
actcatttta gtaaccctac 7380ctcagtcgaa ttggattggg tcatactgtt
gtaggggtaa atttttcttt aattcggag 7439537439DNAHuman poliovirus 2
53ttaaaacagc tctggggttg ttcccacccc agaggcccac gtggcggcca gtacactggt
60attgcggtac ctttgtacgc ctgttttata ctcccttccc ccgtaactta gaagcacaat
120gtccaagttc aataggaggg ggtacaaacc agtaccacca cgaacaagca
cttctgttcc 180cccggtgagg ctgtataggc tgtttccacg gctaaaagcg
gctgatccgt tatccgctca 240tgtacttcga gaagcctagt atcaccttgg
aatcttcgat gcgttgcgct caacactcaa 300ccccagagtg tagcttaggt
cgatgagtct ggacgttcct caccggcgac ggtggtccag 360gctgcgttgg
cggcctacct gtggcccaaa gccacaggac gctagttgtg aacaaggtgt
420gaagagccta ttgagctacc tgagagtcct ccggcccctg aatgcggcta
atcctaacca 480cggagcaggc agtggcaatc cagcgaccag cctgtcgtaa
cgcgcaagtt cgtggcggaa 540ccgactactt tgggtgtccg tgtttccttt
tatttttaca atggctgctt atggtgacaa 600tcattgattg ttatcataaa
gcaaattgga ttggccatcc ggtgagaatt tgattattaa 660attactctct
tgttgggatt gctcctttga aatcctgtgc actcacacct attggaatta
720cctcattgtt aagatatcat caccactatg ggcgcccaag tctcatcaca
gaaagttgga 780gcccatgaga attcaaacag agcttatggc ggatccacca
ttaattacac tactattaat 840tattacaggg attctgcgag caatgccgct
agtaagcagg actttgcaca agacccatcc 900aagttcactg aacctattaa
agatgttctc attaagaccg ctcccacgct aaactctcct 960aatatcgagg
cgtgtgggta tagcgacaga gtgatgcaac taaccctagg caattccacc
1020attaccacac aggaggcggc caattctgtc gttgcatacg gccggtggcc
cgagtacatc 1080aaggactcag aagcaaatcc tgtggaccag ccaactgaac
cggacgttgc cgcgtgcagg 1140ttttacacac tagacactgt tacttggcgc
aaggagtcca gagggtggtg gtggaaactg 1200cctgatgcac taaaggacat
gggattattc ggccagaaca tgttctacca ctacctcggg 1260agggctggct
atactgtgca cgtacagtgt aatgcttcaa agtttcacca gggcgccctc
1320ggggtattcg cagttccaga aatgtgcctg gcaggcgaca gcacaaccca
catgtttaca 1380aaatatgaga atgcaaatcc gggtgagaaa gggggtgaat
tcaaagggag ttttactctg 1440gatactaacg ctaccaaccc tgcacgcaac
ttttgtcccg ttgattatct cttcgggagc 1500ggagtactgg cgggaaatgc
gtttgtttac ccacatcaga taattaatct gcgcaccaac 1560aactgtgcca
cgttggtgct gccatacgtt aattcacttt ccatagacag catgacaaaa
1620cacaacaatt ggggaattgc tatccttccg ctggcaccac ttgactttgc
caccgagtcc 1680tccactgaga tacccattac tctaactatt gcccctatgt
gttgtgaatt caatgggttg 1740cgcaacatca ctgtacccag aactcaaggg
ttaccggtct taaacactcc aggaagcaac 1800cagtacttaa cagcagacaa
ctatcaatcc ccatgtgcga tacccgagtt tgatgtaaca 1860ccacccatag
acatcccggg ggaagtgcgc aacatgatgg aattggcaga gatagacacc
1920atgatacctc tcaatctgac gaaccagcgc aagaacacca tggatatgta
cagagtcgaa 1980ctgaatgatg cggctcactc tgacacacca atattgtgtc
tctcactgtc tccagcatca 2040gatcctaggc tagcacacac tatgctaggt
gaaatactga actactacac acactgggca 2100gggtcattga agttcacatt
tctcttctgc ggctcaatga tggccactgg taaattgcta 2160gtgtcctatg
cacctcctgg tgcggaagcc cctaaaagcc gcaaagaagc gatgctcggc
2220acccacgtga tctgggacat cggattacag tcatcatgca ctatggtggt
accttggatt 2280agcaacacca catacagaca aaccatcaac gatagcttca
cagaaggagg gtacatcagt 2340atgttttacc aaactagagt tgttgtgcca
ttgtccaccc ctagaaagat ggacatattg 2400ggctttgtgt cagcctgcaa
tgacttcagt gtgcgcctgt tgcgtgacac gacgcacata 2460agccaagagg
ctatgccaca aggattgggt gatttaattg aaggggttgt tgagggagtc
2520acgagaaatg ccttgacacc actgacacct gccaacaact tgcctgatac
acaatctagc 2580ggcccagccc actctaagga aacaccagcg ctaacagccg
tagagacagg ggccaccaac 2640ccattggtgc cttcagacac ggtacaaact
cgtcacgtca tccaaaagcg gacgcggtcg 2700gagtctacgg ttgagtcttt
cttcgcaaga ggagcttgtg tggccattat tgaagtggat 2760aatgatgctc
caacaaagcg tgccagtaaa ttattttcag tctggaagat aacttacaaa
2820gacaccgttc agttaagacg taagttggag ttctttacat attcaaggtt
tgacatggag 2880ttcacctttg tggttacatc caattatacc gatgcaaaca
atgggcacgc actaaatcaa 2940gtttaccaga taatgtacat accacctggg
gcaccgatcc ctggcaagtg gaatgattac 3000acatggcaaa cgtcatctaa
cccatcagtg ttttacactt acggggcacc tccagctaga 3060atatcagtgc
cctacgtggg cattgccaat gcatattctc atttttacga tgggtttgcc
3120aaagtaccac tagcaggcca agcctcaaca gagggtgact cgctgtatgg
agcggcttca 3180ttgaatgact tcggatcact ggctgttcga gtggtgaatg
accacaaccc tacgaaactc 3240acttcaaaaa tcagagtgta catgaaacca
aagcacgtca gagtgtggtg tccgcgaccc 3300cctcgagcag tcccatacta
cggaccaggg gttgactaca aggatggact agccccactg 3360ccagagaaag
gcttgacaac ctatggtttt ggccaccaaa ataaggcagt gtacacggca
3420ggttacaaaa tttgcaatta ccacctcgcc acccaggaag acttacaaaa
tgcggtaaac 3480attatgtgga ttagagacct tttagtagtg gaatccaaag
cccaaggcat agactcaatt 3540gctagatgta actgccacac tggagtgtac
tactgtgaat ccaggaggaa gtactacccg 3600gtctctttta ctggccccac
ctttcagtac atggaagcaa atgagtacta tccagcccga 3660taccaatccc
acatgttaat tggccatggt tttgcatctc caggggactg tggtgggatt
3720ctcaggtgcc aacatggagt aattggaatc attacagctg gaggagaagg
cctagtcgct 3780ttctcggaca tcagagatct gtacgcatac gaggaggagg
ctatggagca gggagtctcc 3840aactatattg agtcccttgg ggctgcattt
gggagtggat tcacccagca aataggaaac 3900aaaatttcag aactcactag
catggtcacc agcactataa ctgagaaact actaaagaat 3960ctcattaaaa
taatttcatc ccttgttatc atcaccagaa actatgaaga cacgaccaca
4020gtgctggcta cccttgctct cctcggttgt gatgcgtccc catggcaatg
gctaaagaag 4080aaagcctgtg acatcttgga aatcccctac atcatgcgac
agggcgatag ctggttgaag 4140aagtttacag aggcatgcaa tgcagccaag
ggattggaat gggtgtctaa taaaatatcc 4200aaatttattg actggctcaa
agagaagatc attccacagg ctagagacaa gctagagttt 4260gttaccaaac
tgaagcaact agaaatgttg gagaaccaaa ttgcaaccat tcatcaatcg
4320tgcccaagtc aggagcatca agaaatcctg ttcaataacg tgagatggtt
atccatacag 4380tcaaagagat ttgccccgct ctatgcggtt gaggctaaga
gaatacaaaa gttagagcac 4440acgattaaca actacgtaca gttcaagagc
aaacaccgta ttgaaccagt atgtttgttg 4500gtgcacggta gcccaggcac
gggcaagtca gttgccacca atttaattgc cagagcaata 4560gcagagaagg
agaacacctc cacatactca ctaccaccag atccctccca tttcgatggg
4620tacaagcaac aaggtgtggt gatcatggat gatttgaatc agaacccaga
cggagcagac 4680atgaagctgt tttgtcagat ggtctccact gtagaattca
taccaccaat ggcttcgcta 4740gaagaaaagg gtattttgtt cacatctaat
tacgttttgg cctcaaccaa ttccagtcgc 4800atcaccccac caactgttgc
gcacagcgat gccctagcca ggcgctttgc atttgacatg 4860gacatacaaa
tcatgagcga gtattctaga gatggaaaat tgaacatggc gatggcaact
4920gaaatgtgta agaactgtca tcaaccagca aacttcaaga gatgttgccc
attggtgtgt 4980ggcaaagcca tccagctgat ggacaaatct tccagagtca
gatatagtat agatcagatt 5040actaccatga ttattaatga gaggaacaga
agatcaagta tcggtaattg catggaggca 5100cttttccaag gtcctcttca
atacaaagac ctgaaaatag acattaagac cacacctcct 5160cctgagtgca
tcaatgattt gctccaagca gttgattctc aagaggtaag agactactgt
5220gagaagaagg gttggatagt agacatcact agtcaggtgc aaaccgaaag
aaacatcaat 5280agagcaatga ctattcttca ggcggtcacc acatttgccg
cagttgctgg agtggtgtat 5340gtgatgtaca aactctttgc agggcatcaa
ggagcgtata cagggcttcc caataagaga 5400cccaatgtcc ccaccatcag
gactgccaag gttcagggcc caggatttga ctacgcagtg 5460gcaatggcca
aaagaaacat tcttacggca actaccatta agggagagtt cacaatgctc
5520ggagtgcatg ataatgtggc cattctacca acccacgcat caccgggtga
aacaatagtc 5580attgatggca aggaagtaga ggtactggat gctaaagccc
tggaggacca ggccgggacc 5640aacctagaaa tcaccattgt cactcttaag
agaaatgaga agttcaggga catcagacca 5700cacatcccca ctcaaatcac
tgagacaaat gatggagttt taattgtgaa cactagtaag 5760taccccaaca
tgtatgttcc tgtcggtgct gtgactgaac aggggtatct caatctcggt
5820ggacgccaaa ctgctcgtac tttaatgtac aactttccaa cgagagcagg
tcaatgtggt 5880ggagttatca cctgcactgg caaggtcatc gggatgcatg
ttggtgggaa cggttcacat 5940gggttcgcag cagccctgaa gcgatcctat
ttcactcaga gtcaaggtga aatccagtgg 6000atgagaccat caaaagaagt
gggctacccc gttattaatg ctccatctaa aactaaactg 6060gaacccagtg
cattccatta tgtgtttgaa ggtgtcaagg aaccagctgt gctcaccaaa
6120agtgacccca gattgaagac agattttgaa gaggctatct tttccaagta
tgtgggaaat 6180aagattactg aagtggatga gtacatgaaa gaagctgtcg
atcattacgc aggccagctc 6240atgtcactag acatcaacac agaacaaatg
tgccttgagg atgcaatgta tggcactgac 6300ggtctcgaag ctctagacct
cagtaccagt gctgggtatc cctatgtggc aatggggaaa 6360aagaaaagag
acattttgaa taagcaaacc agagacacaa aggaaatgca aaggcttctg
6420gacacctatg gtattaattt acctttagtc acctatgtga aagatgagct
tagatccaag 6480accaaagtgg aacagggcaa gtccaggcta attgaggcct
caagtctcaa tgactctgtc 6540gccatgagga tggcttttgg caacttgtac
gcagcattcc acaagaaccc aggtgtagtg 6600acaggatcgg ctgttggctg
tgacccagat ttgttttgga gtaaaatacc agtcctcatg 6660gaggaaaaac
tctttgcatt tgattacacg ggttatgatg cttcactaag ccccgcctgg
6720tttgaggctc tcaagatggt tctagagaaa attgggtttg gtgacagagt
ggattacatt 6780gattatctga atcactcgca ccatctatat aaaaataaga
catattgtgt taagggcggc 6840atgccatctg gctgctctgg cacctcaatt
tttaattcaa tgattaataa tctaataatc 6900aggactctct tactgaaaac
ctacaagggc atagatttag accacctgaa gatgatagcc 6960tatggtgatg
atgtaattgc ttcctacccc catgaggttg atgctagtct cctagcccaa
7020tcaggaaaag actatggact aaccatgaca ccagctgaca aatcagccac
ctttgaaaca 7080gtcacatggg agaatgtaac attcttgaaa agattcttta
gagcagatga aaagtatccc 7140tttctggtac atccagtgat gccaatgaaa
gaaattcacg aatcaattag atggactaaa 7200gatcccagaa acactcagga
tcatgttcgc tcactgtgct tattggcttg gcacaatggc 7260gaggaagagt
acaataaatt tttagctaag attagaagtg tgccaatcgg aagagcatta
7320ctgctccctg agtactccac attgtaccgc cgttggctcg actcatttta
gtaaccctac 7380ctcagtcgaa ttggattggg tcatactgtt gtaggggtaa
atttttcttt aattcggag 7439547439DNAArtificialdeoptimized MEF1
poliovirus 54ttaaaacagc tctggggttg ttcccacccc agaggcccac gtggcggcca
gtacactggt 60attgcggtac ctttgtacgc ctgttttata ctcccttccc ccgtaactta
gaagcacaat 120gtccaagttc aataggaggg ggtacaaacc agtaccacca
cgaacaagca cttctgttcc 180cccggtgagg ctgtataggc tgtttccacg
gctaaaagcg gctgatccgt tatccgctca 240tgtacttcga gaagcctagt
atcaccttgg aatcttcgat gcgttgcgct caacactcaa 300ccccagagtg
tagcttaggt cgatgagtct ggacgttcct caccggcgac ggtggtccag
360gctgcgttgg cggcctacct gtggcccaaa gccacaggac gctagttgtg
aacaaggtgt 420gaagagccta ttgagctacc tgagagtcct ccggcccctg
aatgcggcta atcctaacca 480cggagcaggc agtggcaatc cagcgaccag
cctgtcgtaa cgcgcaagtt cgtggcggaa 540ccgactactt tgggtgtccg
tgtttccttt tatttttaca atggctgctt atggtgacaa 600tcattgattg
ttatcataaa gcaaattgga ttggccatcc ggtgagaatt tgattattaa
660attactctct tgttgggatt gctcctttga aatcctgtgc actcacacct
attggaatta 720cctcattgtt aagatatcat caccactatg ggcgcccaag
tctcatcaca gaaagttgga 780gcccatgaga attcaaacag agcttatggc
ggatccacca ttaattacac tactattaat 840tattacaggg attctgcgag
caatgccgct agtaagcagg actttgcaca agacccatcc 900aagttcactg
aacctattaa agatgttctc attaagaccg ctcccacgct aaactctcct
960aatatcgagg cgtgtgggta tagcgacaga gtgatgcaac taaccctagg
caattccacc 1020attaccacac aggaggcggc caattctgtc gttgcatacg
gccggtggcc cgagtacatc 1080aaggactcag aagcaaatcc tgtggaccag
ccaactgaac cggacgttgc cgcgtgcagg 1140ttttacacac tagacactgt
tacttggcgc aaggagtcca gagggtggtg gtggaaactg 1200cctgatgcac
taaaggacat gggattattc ggccagaaca tgttctacca ctacctcggg
1260agggctggct atactgtgca cgtacagtgt aatgcttcaa agtttcacca
gggcgccctc 1320ggggtattcg cagttccaga aatgtgcctg gcaggcgaca
gcacaaccca catgtttaca 1380aaatatgaga atgcaaatcc gggtgagaaa
gggggtgaat tcaaagggag ttttactctg 1440gatactaacg ctaccaaccc
tgcacgcaac ttttgtcccg ttgattatct cttcgggagc 1500ggagtactgg
cgggaaatgc gtttgtttac ccacatcaga taattaatct gcgcaccaac
1560aactgtgcca cgttggtgct gccatacgtt aattcacttt ccatagacag
catgacaaaa 1620cacaacaatt ggggaattgc tatccttccg ctggcaccac
ttgactttgc caccgagtcc 1680tccactgaga tacccattac tctaactatt
gcccctatgt gttgtgaatt caatgggttg 1740cgcaacatca ctgtacccag
aactcaaggg ttaccggtct taaacactcc aggaagcaac 1800cagtacttaa
cagcagacaa ctatcaatcc ccatgtgcga tacccgagtt tgatgtaaca
1860ccacccatag acatcccggg ggaagtgcgc aacatgatgg aattggcaga
gatagacacc 1920atgatacctc tcaatctgac gaaccagcgc aagaacacca
tggatatgta cagagtcgaa 1980ctgaatgatg cggctcactc tgacacacca
atattgtgtc tctcactgtc tccagcatca 2040gatcctaggc tagcacacac
tatgctaggt gaaatactga actactacac acactgggca 2100gggtcattga
agttcacatt tctcttctgc ggctcaatga tggccactgg taaattgcta
2160gtgtcctatg cacctcctgg tgcggaagcc cctaaaagcc gcaaagaagc
gatgctcggc 2220acccacgtga tctgggacat cggattacag tcatcatgca
ctatggtggt accttggatt 2280agcaacacca catacagaca aaccatcaac
gatagcttca cagaaggagg gtacatcagt 2340atgttttacc aaactagagt
tgttgtgcca ttgtccaccc ctagaaagat ggacatattg 2400ggctttgtgt
cagcctgcaa tgacttcagt gtgcgcctgt tgcgtgacac gacgcacata
2460agccaagagg ctatgccaca aggattgggt gatttaattg aaggggttgt
tgagggagtc 2520acgagaaatg ccttgacacc actgacacct gccaacaact
tgcctgatac acaatctagc 2580ggcccagccc actctaagga aacaccagcg
cttacggcgg tcgagacggg tgcgacgaac 2640ccgcttgtcc cgagcgacac
ggtccaaacg cggcacgtca tccaaaagcg gacgcggagc 2700gagagcacgg
tcgagagctt cttcgcgcgg ggtgcgtgtg tcgcgatcat cgaagtcgat
2760aatgatgcgc cgacgaagcg ggcgagcaaa ctttttagcg tctggaagat
cacgtacaaa 2820gacacggtcc agcttcggcg gaagctggag ttctttacgt
atagccggtt tgacatggag 2880ttcacgtttg tcgtcacgag caattatacg
gatgcgaaca atggtcacgc gcttaatcaa 2940gtctaccaga tcatgtacat
cccgccgggt gcgccgatcc cgggtaagtg gaatgattac 3000acgtggcaaa
cgagcagcaa cccgagcgtc ttttacacgt acggtgcgcc gccggcgcgg
3060atcagcgtcc cgtacgtcgg tatcgcgaat gcgtatagcc atttttacga
tggttttgcg 3120aaagtcccgc ttgcgggtca agcgagcacg gagggtgaca
gcctttatgg tgcggcgagc 3180cttaatgact tcggtagcct tgcggtccgg
gtcgtcaatg accacaaccc gacgaaactt 3240acgagcaaaa tccgggtcta
catgaaaccg aagcacgtcc gggtctggtg tccgcggccc 3300cctcgagcag
tcccatacta cggaccaggg gttgactaca aggatggact agccccactg
3360ccagagaaag gcttgacaac ctatggtttt ggccaccaaa ataaggcagt
gtacacggca 3420ggttacaaaa tttgcaatta ccacctcgcc acccaggaag
acttacaaaa tgcggtaaac 3480attatgtgga ttagagacct tttagtagtg
gaatccaaag cccaaggcat agactcaatt 3540gctagatgta actgccacac
tggagtgtac tactgtgaat ccaggaggaa gtactacccg 3600gtctctttta
ctggccccac ctttcagtac atggaagcaa atgagtacta tccagcccga
3660taccaatccc acatgttaat tggccatggt tttgcatctc caggggactg
tggtgggatt 3720ctcaggtgcc aacatggagt aattggaatc attacagctg
gaggagaagg cctagtcgct 3780ttctcggaca tcagagatct gtacgcatac
gaggaggagg ctatggagca gggagtctcc 3840aactatattg agtcccttgg
ggctgcattt gggagtggat tcacccagca aataggaaac 3900aaaatttcag
aactcactag catggtcacc agcactataa ctgagaaact actaaagaat
3960ctcattaaaa taatttcatc ccttgttatc atcaccagaa actatgaaga
cacgaccaca 4020gtgctggcta cccttgctct cctcggttgt gatgcgtccc
catggcaatg gctaaagaag 4080aaagcctgtg acatcttgga aatcccctac
atcatgcgac agggcgatag ctggttgaag 4140aagtttacag aggcatgcaa
tgcagccaag ggattggaat gggtgtctaa taaaatatcc 4200aaatttattg
actggctcaa agagaagatc attccacagg ctagagacaa gctagagttt
4260gttaccaaac tgaagcaact agaaatgttg gagaaccaaa ttgcaaccat
tcatcaatcg 4320tgcccaagtc aggagcatca agaaatcctg ttcaataacg
tgagatggtt atccatacag 4380tcaaagagat ttgccccgct ctatgcggtt
gaggctaaga gaatacaaaa gttagagcac 4440acgattaaca actacgtaca
gttcaagagc aaacaccgta ttgaaccagt atgtttgttg 4500gtgcacggta
gcccaggcac gggcaagtca gttgccacca atttaattgc cagagcaata
4560gcagagaagg agaacacctc cacatactca ctaccaccag atccctccca
tttcgatggg 4620tacaagcaac aaggtgtggt gatcatggat gatttgaatc
agaacccaga cggagcagac 4680atgaagctgt tttgtcagat ggtctccact
gtagaattca taccaccaat ggcttcgcta 4740gaagaaaagg gtattttgtt
cacatctaat tacgttttgg cctcaaccaa ttccagtcgc 4800atcaccccac
caactgttgc gcacagcgat gccctagcca ggcgctttgc atttgacatg
4860gacatacaaa tcatgagcga gtattctaga gatggaaaat tgaacatggc
gatggcaact 4920gaaatgtgta agaactgtca tcaaccagca aacttcaaga
gatgttgccc attggtgtgt 4980ggcaaagcca tccagctgat ggacaaatct
tccagagtca gatatagtat agatcagatt 5040actaccatga ttattaatga
gaggaacaga agatcaagta tcggtaattg catggaggca 5100cttttccaag
gtcctcttca atacaaagac ctgaaaatag acattaagac cacacctcct
5160cctgagtgca tcaatgattt gctccaagca gttgattctc aagaggtaag
agactactgt 5220gagaagaagg gttggatagt agacatcact agtcaggtgc
aaaccgaaag aaacatcaat 5280agagcaatga ctattcttca ggcggtcacc
acatttgccg cagttgctgg agtggtgtat 5340gtgatgtaca aactctttgc
agggcatcaa ggagcgtata cagggcttcc caataagaga 5400cccaatgtcc
ccaccatcag gactgccaag gttcagggcc caggatttga ctacgcagtg
5460gcaatggcca aaagaaacat tcttacggca actaccatta agggagagtt
cacaatgctc 5520ggagtgcatg ataatgtggc cattctacca acccacgcat
caccgggtga aacaatagtc 5580attgatggca aggaagtaga ggtactggat
gctaaagccc tggaggacca ggccgggacc 5640aacctagaaa tcaccattgt
cactcttaag agaaatgaga agttcaggga catcagacca 5700cacatcccca
ctcaaatcac tgagacaaat gatggagttt taattgtgaa cactagtaag
5760taccccaaca tgtatgttcc tgtcggtgct gtgactgaac aggggtatct
caatctcggt 5820ggacgccaaa ctgctcgtac tttaatgtac aactttccaa
cgagagcagg tcaatgtggt 5880ggagttatca cctgcactgg caaggtcatc
gggatgcatg ttggtgggaa cggttcacat 5940gggttcgcag cagccctgaa
gcgatcctat ttcactcaga gtcaaggtga aatccagtgg 6000atgagaccat
caaaagaagt gggctacccc gttattaatg ctccatctaa aactaaactg
6060gaacccagtg cattccatta tgtgtttgaa ggtgtcaagg aaccagctgt
gctcaccaaa 6120agtgacccca gattgaagac agattttgaa gaggctatct
tttccaagta tgtgggaaat 6180aagattactg aagtggatga gtacatgaaa
gaagctgtcg atcattacgc aggccagctc 6240atgtcactag acatcaacac
agaacaaatg tgccttgagg atgcaatgta tggcactgac 6300ggtctcgaag
ctctagacct cagtaccagt gctgggtatc cctatgtggc aatggggaaa
6360aagaaaagag acattttgaa taagcaaacc agagacacaa aggaaatgca
aaggcttctg 6420gacacctatg gtattaattt acctttagtc acctatgtga
aagatgagct tagatccaag 6480accaaagtgg aacagggcaa gtccaggcta
attgaggcct caagtctcaa tgactctgtc 6540gccatgagga tggcttttgg
caacttgtac gcagcattcc acaagaaccc aggtgtagtg 6600acaggatcgg
ctgttggctg tgacccagat ttgttttgga gtaaaatacc agtcctcatg
6660gaggaaaaac tctttgcatt tgattacacg ggttatgatg cttcactaag
ccccgcctgg 6720tttgaggctc tcaagatggt tctagagaaa attgggtttg
gtgacagagt ggattacatt 6780gattatctga atcactcgca ccatctatat
aaaaataaga catattgtgt taagggcggc 6840atgccatctg gctgctctgg
cacctcaatt tttaattcaa tgattaataa tctaataatc 6900aggactctct
tactgaaaac ctacaagggc atagatttag accacctgaa gatgatagcc
6960tatggtgatg atgtaattgc ttcctacccc catgaggttg atgctagtct
cctagcccaa 7020tcaggaaaag actatggact aaccatgaca ccagctgaca
aatcagccac ctttgaaaca 7080gtcacatggg agaatgtaac attcttgaaa
agattcttta gagcagatga aaagtatccc 7140tttctggtac atccagtgat
gccaatgaaa gaaattcacg aatcaattag atggactaaa 7200gatcccagaa
acactcagga tcatgttcgc tcactgtgct tattggcttg gcacaatggc
7260gaggaagagt acaataaatt tttagctaag attagaagtg tgccaatcgg
aagagcatta 7320ctgctccctg agtactccac attgtaccgc cgttggctcg
actcatttta gtaaccctac 7380ctcagtcgaa ttggattggg tcatactgtt
gtaggggtaa atttttcttt aattcggag 7439557439DNAArtificialdeoptimized
MEF1 poliovirus 55ttaaaacagc tctggggttg ttcccacccc agaggcccac
gtggcggcca gtacactggt 60attgcggtac ctttgtacgc ctgttttata ctcccttccc
ccgtaactta gaagcacaat 120gtccaagttc aataggaggg ggtacaaacc
agtaccacca cgaacaagca cttctgttcc 180cccggtgagg ctgtataggc
tgtttccacg gctaaaagcg gctgatccgt tatccgctca 240tgtacttcga
gaagcctagt atcaccttgg aatcttcgat gcgttgcgct caacactcaa
300ccccagagtg tagcttaggt cgatgagtct ggacgttcct caccggcgac
ggtggtccag 360gctgcgttgg cggcctacct gtggcccaaa gccacaggac
gctagttgtg aacaaggtgt 420gaagagccta ttgagctacc tgagagtcct
ccggcccctg aatgcggcta atcctaacca 480cggagcaggc agtggcaatc
cagcgaccag cctgtcgtaa cgcgcaagtt cgtggcggaa 540ccgactactt
tgggtgtccg tgtttccttt tatttttaca atggctgctt atggtgacaa
600tcattgattg ttatcataaa gcaaattgga ttggccatcc ggtgagaatt
tgattattaa 660attactctct tgttgggatt gctcctttga aatcctgtgc
actcacacct attggaatta 720cctcattgtt aagatatcat caccactatg
ggtgcgcaag tcagcagcca gaaagtcggt 780gcgcatgaga atagcaaccg
ggcgtatggt ggtagcacga tcaattacac gacgatcaat 840tattaccggg
atagcgcgag caatgcggcg agcaagcagg actttgcgca agacccgagc
900aagttcacgg aaccgatcaa agatgtcctt atcaagacgg cgccgacgct
taacagcccg 960aatatcgagg cgtgtggtta tagcgaccgg gtcatgcaac
ttacgcttgg taatagcacg 1020atcacgacgc aggaggcggc gaatagcgtc
gtcgcgtacg gccggtggcc ggagtacatc 1080aaggacagcg aagcgaatcc
ggtggaccag ccgacggaac cggacgtcgc ggcgtgccgg 1140ttttacacgc
ttgacacggt cacgtggcgg aaggagagcc ggggttggtg gtggaaactt
1200ccggatgcgc ttaaggacat gggtcttttc ggtcagaaca tgttctacca
ctaccttggt 1260cgggcgggtt atacggtcca cgtccagtgt aatgcgagca
agtttcacca gggtgcgctt 1320ggtgtcttcg cggtcccgga aatgtgcctt
gcgggtgaca gcacgacgca catgtttacg 1380aaatatgaga atgcgaatcc
gggtgagaaa ggtggtgaat tcaaaggtag ctttacgctt 1440gatacgaacg
cgacgaaccc ggcgcggaac ttttgtccgg tcgattatct tttcggtagc
1500ggtgtccttg cgggtaatgc gtttgtctac ccgcatcaga tcatcaatct
tcggacgaac 1560aactgtgcga cgcttgtcct tccgtacgtc aatagcctta
gcatcgacag catgacgaaa 1620cacaacaatt ggggtatcgc gatccttccg
cttgcgccgc ttgactttgc gacggagagc 1680agcacggaga tcccgatcac
gcttacgatc gcgccgatgt gttgtgaatt caatggtctt 1740cggaacatca
cggtcccgcg gacgcaaggt ctaccggtct taaacactcc aggaagcaac
1800cagtacttaa cagcagacaa ctatcaatcc ccatgtgcga tacccgagtt
tgatgtaaca 1860ccacccatag acatcccggg ggaagtgcgc aacatgatgg
aattggcaga gatagacacc 1920atgatacctc tcaatctgac gaaccagcgc
aagaacacca tggatatgta cagagtcgaa 1980ctgaatgatg cggctcactc
tgacacacca atattgtgtc tctcactgtc tccagcatca 2040gatcctaggc
tagcacacac tatgctaggt gaaatactga actactacac acactgggca
2100gggtcattga agttcacatt tctcttctgc ggctcaatga tggccactgg
taaattgcta 2160gtgtcctatg cacctcctgg tgcggaagcc cctaaaagcc
gcaaagaagc gatgctcggc 2220acccacgtga tctgggacat cggattacag
tcatcatgca ctatggtggt accttggatt 2280agcaacacca catacagaca
aaccatcaac gatagcttca cagaaggagg gtacatcagt 2340atgttttacc
aaactagagt tgttgtgcca ttgtccaccc ctagaaagat ggacatattg
2400ggctttgtgt cagcctgcaa tgacttcagt gtgcgcctgt tgcgtgacac
gacgcacata 2460agccaagagg ctatgccaca aggattgggt gatttaattg
aaggggttgt tgagggagtc 2520acgagaaatg ccttgacacc actgacacct
gccaacaact tgcctgatac acaatctagc 2580ggcccagccc actctaagga
aacaccagcg ctaacagccg tagagacagg ggccaccaac 2640ccattggtgc
cttcagacac ggtacaaact cgtcacgtca tccaaaagcg gacgcggtcg
2700gagtctacgg ttgagtcttt cttcgcaaga ggagcttgtg tggccattat
tgaagtggat 2760aatgatgctc caacaaagcg tgccagtaaa ttattttcag
tctggaagat aacttacaaa 2820gacaccgttc agttaagacg taagttggag
ttctttacat attcaaggtt tgacatggag 2880ttcacctttg tggttacatc
caattatacc gatgcaaaca atgggcacgc actaaatcaa 2940gtttaccaga
taatgtacat accacctggg gcaccgatcc ctggcaagtg gaatgattac
3000acatggcaaa cgtcatctaa cccatcagtg ttttacactt acggggcacc
tccagctaga 3060atatcagtgc cctacgtggg cattgccaat gcatattctc
atttttacga tgggtttgcc 3120aaagtaccac tagcaggcca agcctcaaca
gagggtgact cgctgtatgg agcggcttca 3180ttgaatgact tcggatcact
ggctgttcga gtggtgaatg accacaaccc tacgaaactc 3240acttcaaaaa
tcagagtgta catgaaacca aagcacgtca gagtgtggtg tccgcgaccc
3300cctcgagcag tcccatacta cggaccaggg gttgactaca aggatggact
agccccactg 3360ccagagaaag gcttgacaac ctatggtttt ggccaccaaa
ataaggcagt gtacacggca 3420ggttacaaaa tttgcaatta ccacctcgcc
acccaggaag acttacaaaa tgcggtaaac 3480attatgtgga ttagagacct
tttagtagtg gaatccaaag cccaaggcat agactcaatt 3540gctagatgta
actgccacac tggagtgtac tactgtgaat ccaggaggaa gtactacccg
3600gtctctttta ctggccccac ctttcagtac atggaagcaa atgagtacta
tccagcccga 3660taccaatccc acatgttaat tggccatggt tttgcatctc
caggggactg tggtgggatt 3720ctcaggtgcc aacatggagt aattggaatc
attacagctg gaggagaagg cctagtcgct 3780ttctcggaca tcagagatct
gtacgcatac gaggaggagg ctatggagca gggagtctcc 3840aactatattg
agtcccttgg ggctgcattt gggagtggat tcacccagca aataggaaac
3900aaaatttcag aactcactag catggtcacc agcactataa ctgagaaact
actaaagaat 3960ctcattaaaa taatttcatc ccttgttatc atcaccagaa
actatgaaga cacgaccaca 4020gtgctggcta cccttgctct cctcggttgt
gatgcgtccc catggcaatg gctaaagaag 4080aaagcctgtg acatcttgga
aatcccctac atcatgcgac agggcgatag ctggttgaag 4140aagtttacag
aggcatgcaa tgcagccaag ggattggaat gggtgtctaa taaaatatcc
4200aaatttattg actggctcaa agagaagatc attccacagg ctagagacaa
gctagagttt 4260gttaccaaac tgaagcaact agaaatgttg gagaaccaaa
ttgcaaccat tcatcaatcg 4320tgcccaagtc aggagcatca agaaatcctg
ttcaataacg tgagatggtt atccatacag 4380tcaaagagat ttgccccgct
ctatgcggtt gaggctaaga gaatacaaaa gttagagcac 4440acgattaaca
actacgtaca gttcaagagc aaacaccgta ttgaaccagt atgtttgttg
4500gtgcacggta gcccaggcac gggcaagtca gttgccacca atttaattgc
cagagcaata 4560gcagagaagg agaacacctc cacatactca ctaccaccag
atccctccca tttcgatggg 4620tacaagcaac aaggtgtggt gatcatggat
gatttgaatc agaacccaga cggagcagac 4680atgaagctgt tttgtcagat
ggtctccact gtagaattca taccaccaat ggcttcgcta 4740gaagaaaagg
gtattttgtt cacatctaat tacgttttgg cctcaaccaa ttccagtcgc
4800atcaccccac caactgttgc gcacagcgat gccctagcca ggcgctttgc
atttgacatg 4860gacatacaaa tcatgagcga gtattctaga gatggaaaat
tgaacatggc gatggcaact 4920gaaatgtgta agaactgtca tcaaccagca
aacttcaaga gatgttgccc attggtgtgt 4980ggcaaagcca tccagctgat
ggacaaatct tccagagtca gatatagtat agatcagatt 5040actaccatga
ttattaatga gaggaacaga agatcaagta tcggtaattg catggaggca
5100cttttccaag gtcctcttca atacaaagac ctgaaaatag acattaagac
cacacctcct 5160cctgagtgca tcaatgattt gctccaagca gttgattctc
aagaggtaag agactactgt 5220gagaagaagg gttggatagt agacatcact
agtcaggtgc aaaccgaaag aaacatcaat 5280agagcaatga ctattcttca
ggcggtcacc acatttgccg cagttgctgg agtggtgtat 5340gtgatgtaca
aactctttgc agggcatcaa ggagcgtata cagggcttcc caataagaga
5400cccaatgtcc ccaccatcag gactgccaag gttcagggcc caggatttga
ctacgcagtg 5460gcaatggcca aaagaaacat tcttacggca actaccatta
agggagagtt cacaatgctc 5520ggagtgcatg ataatgtggc cattctacca
acccacgcat caccgggtga aacaatagtc 5580attgatggca aggaagtaga
ggtactggat gctaaagccc tggaggacca ggccgggacc 5640aacctagaaa
tcaccattgt cactcttaag agaaatgaga agttcaggga catcagacca
5700cacatcccca ctcaaatcac tgagacaaat gatggagttt taattgtgaa
cactagtaag 5760taccccaaca tgtatgttcc tgtcggtgct gtgactgaac
aggggtatct caatctcggt 5820ggacgccaaa ctgctcgtac tttaatgtac
aactttccaa cgagagcagg tcaatgtggt 5880ggagttatca cctgcactgg
caaggtcatc gggatgcatg ttggtgggaa cggttcacat 5940gggttcgcag
cagccctgaa gcgatcctat ttcactcaga gtcaaggtga aatccagtgg
6000atgagaccat caaaagaagt gggctacccc gttattaatg ctccatctaa
aactaaactg 6060gaacccagtg cattccatta tgtgtttgaa ggtgtcaagg
aaccagctgt gctcaccaaa 6120agtgacccca gattgaagac agattttgaa
gaggctatct tttccaagta tgtgggaaat 6180aagattactg aagtggatga
gtacatgaaa gaagctgtcg atcattacgc aggccagctc 6240atgtcactag
acatcaacac agaacaaatg tgccttgagg atgcaatgta tggcactgac
6300ggtctcgaag ctctagacct cagtaccagt gctgggtatc cctatgtggc
aatggggaaa 6360aagaaaagag acattttgaa taagcaaacc agagacacaa
aggaaatgca aaggcttctg 6420gacacctatg gtattaattt acctttagtc
acctatgtga aagatgagct tagatccaag 6480accaaagtgg aacagggcaa
gtccaggcta attgaggcct caagtctcaa tgactctgtc 6540gccatgagga
tggcttttgg caacttgtac gcagcattcc acaagaaccc aggtgtagtg
6600acaggatcgg ctgttggctg tgacccagat ttgttttgga gtaaaatacc
agtcctcatg 6660gaggaaaaac tctttgcatt tgattacacg ggttatgatg
cttcactaag ccccgcctgg 6720tttgaggctc tcaagatggt tctagagaaa
attgggtttg gtgacagagt ggattacatt 6780gattatctga atcactcgca
ccatctatat aaaaataaga catattgtgt taagggcggc 6840atgccatctg
gctgctctgg cacctcaatt tttaattcaa tgattaataa tctaataatc
6900aggactctct tactgaaaac ctacaagggc atagatttag accacctgaa
gatgatagcc 6960tatggtgatg atgtaattgc ttcctacccc catgaggttg
atgctagtct cctagcccaa 7020tcaggaaaag actatggact aaccatgaca
ccagctgaca aatcagccac ctttgaaaca 7080gtcacatggg agaatgtaac
attcttgaaa agattcttta gagcagatga aaagtatccc 7140tttctggtac
atccagtgat gccaatgaaa gaaattcacg aatcaattag atggactaaa
7200gatcccagaa acactcagga tcatgttcgc tcactgtgct tattggcttg
gcacaatggc 7260gaggaagagt acaataaatt tttagctaag attagaagtg
tgccaatcgg aagagcatta 7320ctgctccctg agtactccac attgtaccgc
cgttggctcg actcatttta gtaaccctac 7380ctcagtcgaa ttggattggg
tcatactgtt gtaggggtaa atttttcttt aattcggag
7439567439DNAArtificialdeoptimized MEF1 poliovirus 56ttaaaacagc
tctggggttg ttcccacccc agaggcccac gtggcggcca gtacactggt 60attgcggtac
ctttgtacgc ctgttttata ctcccttccc ccgtaactta gaagcacaat
120gtccaagttc aataggaggg ggtacaaacc agtaccacca cgaacaagca
cttctgttcc 180cccggtgagg ctgtataggc tgtttccacg gctaaaagcg
gctgatccgt tatccgctca 240tgtacttcga gaagcctagt atcaccttgg
aatcttcgat gcgttgcgct caacactcaa 300ccccagagtg tagcttaggt
cgatgagtct ggacgttcct caccggcgac ggtggtccag 360gctgcgttgg
cggcctacct gtggcccaaa gccacaggac gctagttgtg aacaaggtgt
420gaagagccta ttgagctacc tgagagtcct ccggcccctg aatgcggcta
atcctaacca 480cggagcaggc agtggcaatc cagcgaccag cctgtcgtaa
cgcgcaagtt cgtggcggaa 540ccgactactt tgggtgtccg tgtttccttt
tatttttaca atggctgctt atggtgacaa 600tcattgattg ttatcataaa
gcaaattgga ttggccatcc ggtgagaatt tgattattaa 660attactctct
tgttgggatt gctcctttga aatcctgtgc actcacacct attggaatta
720cctcattgtt aagatatcat caccactatg ggcgcccaag tctcatcaca
gaaagttgga 780gcccatgaga attcaaacag agcttatggc ggatccacca
ttaattacac tactattaat 840tattacaggg attctgcgag caatgccgct
agtaagcagg actttgcaca agacccatcc 900aagttcactg aacctattaa
agatgttctc attaagaccg ctcccacgct aaactctcct 960aatatcgagg
cgtgtgggta tagcgacaga gtgatgcaac taaccctagg caattccacc
1020attaccacac aggaggcggc caattctgtc gttgcatacg gccggtggcc
cgagtacatc 1080aaggactcag aagcaaatcc tgtggaccag ccaactgaac
cggacgttgc cgcgtgcagg 1140ttttacacac tagacactgt tacttggcgc
aaggagtcca gagggtggtg gtggaaactg 1200cctgatgcac taaaggacat
gggattattc ggccagaaca tgttctacca ctacctcggg 1260agggctggct
atactgtgca cgtacagtgt aatgcttcaa agtttcacca gggcgccctc
1320ggggtattcg cagttccaga aatgtgcctg gcaggcgaca gcacaaccca
catgtttaca 1380aaatatgaga atgcaaatcc gggtgagaaa gggggtgaat
tcaaagggag ttttactctg 1440gatactaacg ctaccaaccc tgcacgcaac
ttttgtcccg ttgattatct cttcgggagc 1500ggagtactgg cgggaaatgc
gtttgtttac ccacatcaga taattaatct gcgcaccaac 1560aactgtgcca
cgttggtgct gccatacgtt aattcacttt ccatagacag catgacaaaa
1620cacaacaatt ggggaattgc tatccttccg ctggcaccac ttgactttgc
caccgagtcc 1680tccactgaga tacccattac tctaactatt gcccctatgt
gttgtgaatt caatgggttg 1740cgcaacatca ctgtacccag aactcaaggg
ttaccggtcc ttaacacgcc gggtagcaac 1800cagtacctta cggcggacaa
ctatcaaagc ccgtgtgcga tcccggagtt tgatgtcacg 1860ccgccgatcg
acatcccggg tgaagtccgg aacatgatgg aacttgcgga gatcgacacg
1920atgatcccgc ttaatcttac gaaccagcgg aagaacacga tggatatgta
ccgggtcgaa 1980cttaatgatg cggcgcacag cgacacgccg atcctttgtc
ttagccttag cccggcgagc 2040gatccgcggc tagcgcacac gatgcttggt
gaaatcctta actactacac gcactgggcg 2100ggtagcctta agttcacgtt
tcttttctgc ggtagcatga tggcgacggg taaacttctt 2160gtcagctatg
cgccgccggg tgcggaagcg ccgaaaagcc ggaaagaagc gatgcttggt
2220acgcacgtca tctgggacat cggtcttcag agcagctgca cgatggtcgt
cccgtggatc 2280agcaacacga cgtaccggca aacgatcaac gatagcttca
cggaaggtgg ttacatcagc 2340atgttttacc aaacgcgggt cgtcgtcccg
cttagcacgc cgcggaagat ggacatcctt 2400ggttttgtca gcgcgtgcaa
tgacttcagc gtccggcttc ttcgggacac gacgcacatc 2460agccaagagg
cgatgccgca aggtcttggt gatcttatcg aaggtgtcgt cgagggtgtc
2520acgcggaatg cgcttacgcc gcttacgccg gcgaacaacc ttccggatac
gcaaagcagc 2580ggtccggcgc acagcaagga aacgccagcg ctaacagccg
tagagacagg ggccaccaac 2640ccattggtgc cttcagacac ggtacaaact
cgtcacgtca tccaaaagcg gacgcggtcg 2700gagtctacgg ttgagtcttt
cttcgcaaga ggagcttgtg tggccattat tgaagtggat 2760aatgatgctc
caacaaagcg tgccagtaaa ttattttcag tctggaagat aacttacaaa
2820gacaccgttc agttaagacg taagttggag ttctttacat attcaaggtt
tgacatggag 2880ttcacctttg tggttacatc caattatacc gatgcaaaca
atgggcacgc actaaatcaa 2940gtttaccaga taatgtacat accacctggg
gcaccgatcc ctggcaagtg gaatgattac 3000acatggcaaa cgtcatctaa
cccatcagtg ttttacactt acggggcacc tccagctaga 3060atatcagtgc
cctacgtggg cattgccaat gcatattctc atttttacga tgggtttgcc
3120aaagtaccac tagcaggcca agcctcaaca gagggtgact cgctgtatgg
agcggcttca 3180ttgaatgact tcggatcact ggctgttcga gtggtgaatg
accacaaccc tacgaaactc 3240acttcaaaaa tcagagtgta catgaaacca
aagcacgtca gagtgtggtg tccgcgaccc 3300cctcgagcag tcccatacta
cggaccaggg gttgactaca aggatggact agccccactg 3360ccagagaaag
gcttgacaac ctatggtttt ggccaccaaa ataaggcagt gtacacggca
3420ggttacaaaa tttgcaatta ccacctcgcc acccaggaag acttacaaaa
tgcggtaaac 3480attatgtgga ttagagacct tttagtagtg gaatccaaag
cccaaggcat agactcaatt 3540gctagatgta actgccacac tggagtgtac
tactgtgaat ccaggaggaa gtactacccg 3600gtctctttta ctggccccac
ctttcagtac atggaagcaa atgagtacta tccagcccga 3660taccaatccc
acatgttaat tggccatggt tttgcatctc caggggactg tggtgggatt
3720ctcaggtgcc aacatggagt aattggaatc attacagctg gaggagaagg
cctagtcgct 3780ttctcggaca tcagagatct gtacgcatac gaggaggagg
ctatggagca gggagtctcc 3840aactatattg agtcccttgg ggctgcattt
gggagtggat tcacccagca aataggaaac 3900aaaatttcag aactcactag
catggtcacc agcactataa ctgagaaact actaaagaat 3960ctcattaaaa
taatttcatc ccttgttatc atcaccagaa actatgaaga cacgaccaca
4020gtgctggcta cccttgctct cctcggttgt gatgcgtccc catggcaatg
gctaaagaag 4080aaagcctgtg acatcttgga aatcccctac atcatgcgac
agggcgatag ctggttgaag 4140aagtttacag aggcatgcaa tgcagccaag
ggattggaat gggtgtctaa taaaatatcc 4200aaatttattg actggctcaa
agagaagatc attccacagg ctagagacaa gctagagttt 4260gttaccaaac
tgaagcaact agaaatgttg gagaaccaaa ttgcaaccat tcatcaatcg
4320tgcccaagtc aggagcatca agaaatcctg ttcaataacg tgagatggtt
atccatacag 4380tcaaagagat ttgccccgct ctatgcggtt gaggctaaga
gaatacaaaa gttagagcac 4440acgattaaca actacgtaca gttcaagagc
aaacaccgta ttgaaccagt atgtttgttg 4500gtgcacggta gcccaggcac
gggcaagtca gttgccacca atttaattgc cagagcaata 4560gcagagaagg
agaacacctc cacatactca ctaccaccag atccctccca tttcgatggg
4620tacaagcaac aaggtgtggt gatcatggat gatttgaatc agaacccaga
cggagcagac 4680atgaagctgt tttgtcagat ggtctccact gtagaattca
taccaccaat ggcttcgcta 4740gaagaaaagg gtattttgtt cacatctaat
tacgttttgg cctcaaccaa ttccagtcgc 4800atcaccccac caactgttgc
gcacagcgat gccctagcca ggcgctttgc atttgacatg 4860gacatacaaa
tcatgagcga gtattctaga gatggaaaat tgaacatggc gatggcaact
4920gaaatgtgta agaactgtca tcaaccagca aacttcaaga gatgttgccc
attggtgtgt 4980ggcaaagcca tccagctgat ggacaaatct tccagagtca
gatatagtat agatcagatt 5040actaccatga ttattaatga gaggaacaga
agatcaagta tcggtaattg catggaggca 5100cttttccaag gtcctcttca
atacaaagac ctgaaaatag acattaagac cacacctcct 5160cctgagtgca
tcaatgattt gctccaagca gttgattctc aagaggtaag agactactgt
5220gagaagaagg gttggatagt agacatcact agtcaggtgc aaaccgaaag
aaacatcaat 5280agagcaatga ctattcttca ggcggtcacc acatttgccg
cagttgctgg agtggtgtat 5340gtgatgtaca aactctttgc agggcatcaa
ggagcgtata cagggcttcc caataagaga 5400cccaatgtcc ccaccatcag
gactgccaag gttcagggcc caggatttga ctacgcagtg 5460gcaatggcca
aaagaaacat tcttacggca actaccatta agggagagtt cacaatgctc
5520ggagtgcatg ataatgtggc cattctacca acccacgcat caccgggtga
aacaatagtc 5580attgatggca aggaagtaga ggtactggat gctaaagccc
tggaggacca ggccgggacc 5640aacctagaaa tcaccattgt cactcttaag
agaaatgaga agttcaggga catcagacca 5700cacatcccca ctcaaatcac
tgagacaaat gatggagttt taattgtgaa cactagtaag 5760taccccaaca
tgtatgttcc tgtcggtgct gtgactgaac aggggtatct caatctcggt
5820ggacgccaaa ctgctcgtac tttaatgtac aactttccaa cgagagcagg
tcaatgtggt 5880ggagttatca cctgcactgg caaggtcatc gggatgcatg
ttggtgggaa cggttcacat 5940gggttcgcag cagccctgaa gcgatcctat
ttcactcaga gtcaaggtga aatccagtgg 6000atgagaccat caaaagaagt
gggctacccc gttattaatg ctccatctaa aactaaactg 6060gaacccagtg
cattccatta tgtgtttgaa ggtgtcaagg aaccagctgt gctcaccaaa
6120agtgacccca gattgaagac agattttgaa gaggctatct tttccaagta
tgtgggaaat 6180aagattactg aagtggatga gtacatgaaa gaagctgtcg
atcattacgc aggccagctc 6240atgtcactag acatcaacac agaacaaatg
tgccttgagg atgcaatgta tggcactgac 6300ggtctcgaag ctctagacct
cagtaccagt gctgggtatc cctatgtggc aatggggaaa 6360aagaaaagag
acattttgaa taagcaaacc agagacacaa aggaaatgca aaggcttctg
6420gacacctatg gtattaattt acctttagtc acctatgtga aagatgagct
tagatccaag 6480accaaagtgg aacagggcaa gtccaggcta attgaggcct
caagtctcaa tgactctgtc 6540gccatgagga tggcttttgg caacttgtac
gcagcattcc acaagaaccc aggtgtagtg 6600acaggatcgg ctgttggctg
tgacccagat ttgttttgga gtaaaatacc agtcctcatg 6660gaggaaaaac
tctttgcatt tgattacacg ggttatgatg cttcactaag ccccgcctgg
6720tttgaggctc tcaagatggt tctagagaaa attgggtttg gtgacagagt
ggattacatt 6780gattatctga atcactcgca ccatctatat aaaaataaga
catattgtgt taagggcggc 6840atgccatctg gctgctctgg cacctcaatt
tttaattcaa tgattaataa tctaataatc 6900aggactctct tactgaaaac
ctacaagggc atagatttag accacctgaa gatgatagcc 6960tatggtgatg
atgtaattgc ttcctacccc catgaggttg atgctagtct cctagcccaa
7020tcaggaaaag actatggact aaccatgaca ccagctgaca aatcagccac
ctttgaaaca 7080gtcacatggg agaatgtaac attcttgaaa agattcttta
gagcagatga aaagtatccc 7140tttctggtac atccagtgat gccaatgaaa
gaaattcacg aatcaattag atggactaaa 7200gatcccagaa acactcagga
tcatgttcgc tcactgtgct tattggcttg gcacaatggc 7260gaggaagagt
acaataaatt tttagctaag attagaagtg tgccaatcgg aagagcatta
7320ctgctccctg agtactccac attgtaccgc cgttggctcg actcatttta
gtaaccctac 7380ctcagtcgaa ttggattggg tcatactgtt gtaggggtaa
atttttcttt aattcggag 7439577439DNAArtificialdeoptimized MEF1
poliovirus 57ttaaaacagc tctggggttg ttcccacccc agaggcccac gtggcggcca
gtacactggt 60attgcggtac ctttgtacgc ctgttttata ctcccttccc ccgtaactta
gaagcacaat 120gtccaagttc aataggaggg ggtacaaacc agtaccacca
cgaacaagca cttctgttcc 180cccggtgagg ctgtataggc tgtttccacg
gctaaaagcg gctgatccgt tatccgctca 240tgtacttcga gaagcctagt
atcaccttgg aatcttcgat gcgttgcgct caacactcaa 300ccccagagtg
tagcttaggt cgatgagtct ggacgttcct caccggcgac ggtggtccag
360gctgcgttgg cggcctacct gtggcccaaa gccacaggac gctagttgtg
aacaaggtgt 420gaagagccta ttgagctacc tgagagtcct ccggcccctg
aatgcggcta atcctaacca 480cggagcaggc agtggcaatc cagcgaccag
cctgtcgtaa cgcgcaagtt cgtggcggaa 540ccgactactt tgggtgtccg
tgtttccttt tatttttaca atggctgctt atggtgacaa 600tcattgattg
ttatcataaa gcaaattgga ttggccatcc ggtgagaatt tgattattaa
660attactctct tgttgggatt gctcctttga aatcctgtgc actcacacct
attggaatta 720cctcattgtt aagatatcat caccactatg ggtgcgcaag
tcagcagcca gaaagtcggt 780gcgcatgaga atagcaaccg ggcgtatggt
ggtagcacga tcaattacac gacgatcaat 840tattaccggg atagcgcgag
caatgcggcg agcaagcagg actttgcgca agacccgagc 900aagttcacgg
aaccgatcaa agatgtcctt atcaagacgg cgccgacgct taacagcccg
960aatatcgagg cgtgtggtta tagcgaccgg gtcatgcaac ttacgcttgg
taatagcacg 1020atcacgacgc aggaggcggc gaatagcgtc gtcgcgtacg
gccggtggcc ggagtacatc 1080aaggacagcg aagcgaatcc ggtggaccag
ccgacggaac cggacgtcgc ggcgtgccgg 1140ttttacacgc ttgacacggt
cacgtggcgg aaggagagcc ggggttggtg gtggaaactt 1200ccggatgcgc
ttaaggacat gggtcttttc ggtcagaaca tgttctacca ctaccttggt
1260cgggcgggtt atacggtcca cgtccagtgt aatgcgagca agtttcacca
gggtgcgctt 1320ggtgtcttcg cggtcccgga aatgtgcctt gcgggtgaca
gcacgacgca catgtttacg 1380aaatatgaga atgcgaatcc gggtgagaaa
ggtggtgaat tcaaaggtag ctttacgctt 1440gatacgaacg cgacgaaccc
ggcgcggaac ttttgtccgg tcgattatct tttcggtagc 1500ggtgtccttg
cgggtaatgc gtttgtctac ccgcatcaga tcatcaatct tcggacgaac
1560aactgtgcga cgcttgtcct tccgtacgtc aatagcctta gcatcgacag
catgacgaaa 1620cacaacaatt ggggtatcgc gatccttccg cttgcgccgc
ttgactttgc gacggagagc 1680agcacggaga tcccgatcac gcttacgatc
gcgccgatgt gttgtgaatt caatggtctt 1740cggaacatca cggtcccgcg
gacgcaaggt ctaccggtcc ttaacacgcc gggtagcaac 1800cagtacctta
cggcggacaa ctatcaaagc ccgtgtgcga tcccggagtt tgatgtcacg
1860ccgccgatcg acatcccggg tgaagtccgg aacatgatgg aacttgcgga
gatcgacacg 1920atgatcccgc ttaatcttac gaaccagcgg aagaacacga
tggatatgta ccgggtcgaa 1980cttaatgatg cggcgcacag cgacacgccg
atcctttgtc ttagccttag cccggcgagc 2040gatccgcggc tagcgcacac
gatgcttggt gaaatcctta actactacac gcactgggcg 2100ggtagcctta
agttcacgtt tcttttctgc ggtagcatga tggcgacggg taaacttctt
2160gtcagctatg cgccgccggg tgcggaagcg ccgaaaagcc ggaaagaagc
gatgcttggt 2220acgcacgtca tctgggacat cggtcttcag agcagctgca
cgatggtcgt cccgtggatc 2280agcaacacga cgtaccggca aacgatcaac
gatagcttca cggaaggtgg ttacatcagc 2340atgttttacc aaacgcgggt
cgtcgtcccg cttagcacgc cgcggaagat ggacatcctt 2400ggttttgtca
gcgcgtgcaa tgacttcagc gtccggcttc ttcgggacac gacgcacatc
2460agccaagagg cgatgccgca aggtcttggt gatcttatcg aaggtgtcgt
cgagggtgtc 2520acgcggaatg cgcttacgcc gcttacgccg gcgaacaacc
ttccggatac gcaaagcagc 2580ggtccggcgc acagcaagga aacgccagcg
ctaacagccg tagagacagg ggccaccaac 2640ccattggtgc cttcagacac
ggtacaaact cgtcacgtca tccaaaagcg gacgcggtcg 2700gagtctacgg
ttgagtcttt cttcgcaaga ggagcttgtg tggccattat tgaagtggat
2760aatgatgctc caacaaagcg tgccagtaaa ttattttcag tctggaagat
aacttacaaa 2820gacaccgttc agttaagacg taagttggag ttctttacat
attcaaggtt tgacatggag 2880ttcacctttg tggttacatc caattatacc
gatgcaaaca atgggcacgc actaaatcaa 2940gtttaccaga taatgtacat
accacctggg gcaccgatcc ctggcaagtg gaatgattac 3000acatggcaaa
cgtcatctaa cccatcagtg ttttacactt acggggcacc tccagctaga
3060atatcagtgc cctacgtggg cattgccaat gcatattctc atttttacga
tgggtttgcc 3120aaagtaccac tagcaggcca agcctcaaca gagggtgact
cgctgtatgg agcggcttca 3180ttgaatgact tcggatcact ggctgttcga
gtggtgaatg accacaaccc tacgaaactc 3240acttcaaaaa tcagagtgta
catgaaacca aagcacgtca gagtgtggtg tccgcgaccc 3300cctcgagcag
tcccatacta cggaccaggg gttgactaca aggatggact agccccactg
3360ccagagaaag gcttgacaac ctatggtttt ggccaccaaa ataaggcagt
gtacacggca 3420ggttacaaaa tttgcaatta ccacctcgcc acccaggaag
acttacaaaa tgcggtaaac 3480attatgtgga ttagagacct tttagtagtg
gaatccaaag cccaaggcat agactcaatt 3540gctagatgta actgccacac
tggagtgtac tactgtgaat ccaggaggaa gtactacccg 3600gtctctttta
ctggccccac ctttcagtac atggaagcaa atgagtacta tccagcccga
3660taccaatccc acatgttaat tggccatggt tttgcatctc caggggactg
tggtgggatt 3720ctcaggtgcc aacatggagt aattggaatc attacagctg
gaggagaagg cctagtcgct 3780ttctcggaca tcagagatct gtacgcatac
gaggaggagg ctatggagca gggagtctcc 3840aactatattg agtcccttgg
ggctgcattt gggagtggat tcacccagca aataggaaac 3900aaaatttcag
aactcactag catggtcacc agcactataa ctgagaaact actaaagaat
3960ctcattaaaa taatttcatc ccttgttatc atcaccagaa actatgaaga
cacgaccaca 4020gtgctggcta cccttgctct cctcggttgt gatgcgtccc
catggcaatg gctaaagaag 4080aaagcctgtg acatcttgga aatcccctac
atcatgcgac agggcgatag ctggttgaag 4140aagtttacag aggcatgcaa
tgcagccaag ggattggaat gggtgtctaa taaaatatcc 4200aaatttattg
actggctcaa agagaagatc attccacagg ctagagacaa gctagagttt
4260gttaccaaac tgaagcaact agaaatgttg gagaaccaaa ttgcaaccat
tcatcaatcg 4320tgcccaagtc aggagcatca agaaatcctg ttcaataacg
tgagatggtt atccatacag 4380tcaaagagat ttgccccgct ctatgcggtt
gaggctaaga gaatacaaaa gttagagcac 4440acgattaaca actacgtaca
gttcaagagc aaacaccgta ttgaaccagt atgtttgttg 4500gtgcacggta
gcccaggcac gggcaagtca gttgccacca atttaattgc cagagcaata
4560gcagagaagg agaacacctc cacatactca ctaccaccag atccctccca
tttcgatggg 4620tacaagcaac aaggtgtggt gatcatggat gatttgaatc
agaacccaga cggagcagac 4680atgaagctgt tttgtcagat ggtctccact
gtagaattca taccaccaat ggcttcgcta 4740gaagaaaagg gtattttgtt
cacatctaat tacgttttgg cctcaaccaa ttccagtcgc 4800atcaccccac
caactgttgc gcacagcgat gccctagcca ggcgctttgc atttgacatg
4860gacatacaaa tcatgagcga gtattctaga gatggaaaat tgaacatggc
gatggcaact 4920gaaatgtgta agaactgtca tcaaccagca aacttcaaga
gatgttgccc attggtgtgt 4980ggcaaagcca tccagctgat ggacaaatct
tccagagtca gatatagtat agatcagatt 5040actaccatga ttattaatga
gaggaacaga agatcaagta tcggtaattg catggaggca 5100cttttccaag
gtcctcttca atacaaagac ctgaaaatag acattaagac cacacctcct
5160cctgagtgca tcaatgattt gctccaagca gttgattctc aagaggtaag
agactactgt 5220gagaagaagg gttggatagt agacatcact agtcaggtgc
aaaccgaaag aaacatcaat 5280agagcaatga ctattcttca ggcggtcacc
acatttgccg cagttgctgg agtggtgtat 5340gtgatgtaca aactctttgc
agggcatcaa ggagcgtata cagggcttcc caataagaga 5400cccaatgtcc
ccaccatcag gactgccaag gttcagggcc caggatttga ctacgcagtg
5460gcaatggcca aaagaaacat tcttacggca actaccatta agggagagtt
cacaatgctc 5520ggagtgcatg ataatgtggc cattctacca acccacgcat
caccgggtga aacaatagtc 5580attgatggca aggaagtaga ggtactggat
gctaaagccc tggaggacca ggccgggacc 5640aacctagaaa tcaccattgt
cactcttaag agaaatgaga agttcaggga catcagacca 5700cacatcccca
ctcaaatcac tgagacaaat gatggagttt taattgtgaa cactagtaag
5760taccccaaca tgtatgttcc tgtcggtgct gtgactgaac aggggtatct
caatctcggt 5820ggacgccaaa ctgctcgtac tttaatgtac aactttccaa
cgagagcagg tcaatgtggt 5880ggagttatca cctgcactgg caaggtcatc
gggatgcatg ttggtgggaa cggttcacat 5940gggttcgcag cagccctgaa
gcgatcctat ttcactcaga gtcaaggtga aatccagtgg 6000atgagaccat
caaaagaagt gggctacccc gttattaatg ctccatctaa aactaaactg
6060gaacccagtg cattccatta tgtgtttgaa ggtgtcaagg aaccagctgt
gctcaccaaa 6120agtgacccca gattgaagac agattttgaa gaggctatct
tttccaagta tgtgggaaat 6180aagattactg aagtggatga gtacatgaaa
gaagctgtcg atcattacgc aggccagctc 6240atgtcactag acatcaacac
agaacaaatg tgccttgagg atgcaatgta tggcactgac 6300ggtctcgaag
ctctagacct cagtaccagt gctgggtatc cctatgtggc aatggggaaa
6360aagaaaagag acattttgaa taagcaaacc agagacacaa aggaaatgca
aaggcttctg 6420gacacctatg gtattaattt acctttagtc acctatgtga
aagatgagct tagatccaag 6480accaaagtgg aacagggcaa gtccaggcta
attgaggcct caagtctcaa tgactctgtc 6540gccatgagga tggcttttgg
caacttgtac gcagcattcc acaagaaccc aggtgtagtg 6600acaggatcgg
ctgttggctg tgacccagat ttgttttgga gtaaaatacc agtcctcatg
6660gaggaaaaac tctttgcatt tgattacacg ggttatgatg cttcactaag
ccccgcctgg 6720tttgaggctc tcaagatggt tctagagaaa attgggtttg
gtgacagagt ggattacatt 6780gattatctga atcactcgca ccatctatat
aaaaataaga catattgtgt taagggcggc 6840atgccatctg gctgctctgg
cacctcaatt tttaattcaa tgattaataa tctaataatc 6900aggactctct
tactgaaaac ctacaagggc atagatttag accacctgaa gatgatagcc
6960tatggtgatg atgtaattgc ttcctacccc catgaggttg atgctagtct
cctagcccaa 7020tcaggaaaag actatggact aaccatgaca ccagctgaca
aatcagccac ctttgaaaca 7080gtcacatggg agaatgtaac attcttgaaa
agattcttta gagcagatga aaagtatccc 7140tttctggtac atccagtgat
gccaatgaaa gaaattcacg aatcaattag atggactaaa 7200gatcccagaa
acactcagga tcatgttcgc tcactgtgct tattggcttg gcacaatggc
7260gaggaagagt acaataaatt tttagctaag attagaagtg tgccaatcgg
aagagcatta 7320ctgctccctg agtactccac attgtaccgc cgttggctcg
actcatttta gtaaccctac 7380ctcagtcgaa ttggattggg tcatactgtt
gtaggggtaa atttttcttt aattcggag 7439587439DNAArtificialdeoptimized
MEF1 poliovirus 58ttaaaacagc tctggggttg ttcccacccc agaggcccac
gtggcggcca gtacactggt 60attgcggtac ctttgtacgc ctgttttata ctcccttccc
ccgtaactta gaagcacaat 120gtccaagttc aataggaggg ggtacaaacc
agtaccacca cgaacaagca cttctgttcc 180cccggtgagg ctgtataggc
tgtttccacg gctaaaagcg gctgatccgt tatccgctca 240tgtacttcga
gaagcctagt atcaccttgg aatcttcgat gcgttgcgct caacactcaa
300ccccagagtg tagcttaggt cgatgagtct ggacgttcct caccggcgac
ggtggtccag 360gctgcgttgg cggcctacct gtggcccaaa gccacaggac
gctagttgtg aacaaggtgt 420gaagagccta ttgagctacc tgagagtcct
ccggcccctg aatgcggcta atcctaacca 480cggagcaggc agtggcaatc
cagcgaccag cctgtcgtaa cgcgcaagtt cgtggcggaa 540ccgactactt
tgggtgtccg tgtttccttt tatttttaca atggctgctt atggtgacaa
600tcattgattg ttatcataaa gcaaattgga ttggccatcc ggtgagaatt
tgattattaa 660attactctct tgttgggatt gctcctttga aatcctgtgc
actcacacct attggaatta 720cctcattgtt aagatatcat caccactatg
ggtgcgcaag tcagcagcca gaaagtcggt 780gcgcatgaga atagcaaccg
ggcgtatggt ggtagcacga tcaattacac gacgatcaat 840tattaccggg
atagcgcgag caatgcggcg agcaagcagg actttgcgca agacccgagc
900aagttcacgg aaccgatcaa agatgtcctt atcaagacgg cgccgacgct
taacagcccg 960aatatcgagg cgtgtggtta tagcgaccgg gtcatgcaac
ttacgcttgg taatagcacg 1020atcacgacgc aggaggcggc gaatagcgtc
gtcgcgtacg gccggtggcc ggagtacatc 1080aaggacagcg aagcgaatcc
ggtggaccag ccgacggaac cggacgtcgc ggcgtgccgg 1140ttttacacgc
ttgacacggt cacgtggcgg aaggagagcc ggggttggtg gtggaaactt
1200ccggatgcgc ttaaggacat gggtcttttc ggtcagaaca tgttctacca
ctaccttggt 1260cgggcgggtt atacggtcca cgtccagtgt aatgcgagca
agtttcacca gggtgcgctt 1320ggtgtcttcg cggtcccgga aatgtgcctt
gcgggtgaca gcacgacgca catgtttacg 1380aaatatgaga atgcgaatcc
gggtgagaaa ggtggtgaat tcaaaggtag ctttacgctt 1440gatacgaacg
cgacgaaccc ggcgcggaac ttttgtccgg tcgattatct tttcggtagc
1500ggtgtccttg cgggtaatgc gtttgtctac ccgcatcaga tcatcaatct
tcggacgaac 1560aactgtgcga cgcttgtcct tccgtacgtc aatagcctta
gcatcgacag catgacgaaa 1620cacaacaatt ggggtatcgc gatccttccg
cttgcgccgc ttgactttgc gacggagagc 1680agcacggaga tcccgatcac
gcttacgatc gcgccgatgt gttgtgaatt caatggtctt 1740cggaacatca
cggtcccgcg gacgcaaggt ctaccggtcc ttaacacgcc gggtagcaac
1800cagtacctta cggcggacaa ctatcaaagc ccgtgtgcga tcccggagtt
tgatgtcacg 1860ccgccgatcg acatcccggg tgaagtccgg aacatgatgg
aacttgcgga gatcgacacg 1920atgatcccgc
ttaatcttac gaaccagcgg aagaacacga tggatatgta ccgggtcgaa
1980cttaatgatg cggcgcacag cgacacgccg atcctttgtc ttagccttag
cccggcgagc 2040gatccgcggc tagcgcacac gatgcttggt gaaatcctta
actactacac gcactgggcg 2100ggtagcctta agttcacgtt tcttttctgc
ggtagcatga tggcgacggg taaacttctt 2160gtcagctatg cgccgccggg
tgcggaagcg ccgaaaagcc ggaaagaagc gatgcttggt 2220acgcacgtca
tctgggacat cggtcttcag agcagctgca cgatggtcgt cccgtggatc
2280agcaacacga cgtaccggca aacgatcaac gatagcttca cggaaggtgg
ttacatcagc 2340atgttttacc aaacgcgggt cgtcgtcccg cttagcacgc
cgcggaagat ggacatcctt 2400ggttttgtca gcgcgtgcaa tgacttcagc
gtccggcttc ttcgggacac gacgcacatc 2460agccaagagg cgatgccgca
aggtcttggt gatcttatcg aaggtgtcgt cgagggtgtc 2520acgcggaatg
cgcttacgcc gcttacgccg gcgaacaacc ttccggatac gcaaagcagc
2580ggtccggcgc acagcaagga aacgccagcg cttacggcgg tcgagacggg
tgcgacgaac 2640ccgcttgtcc cgagcgacac ggtccaaacg cggcacgtca
tccaaaagcg gacgcggagc 2700gagagcacgg tcgagagctt cttcgcgcgg
ggtgcgtgtg tcgcgatcat cgaagtcgat 2760aatgatgcgc cgacgaagcg
ggcgagcaaa ctttttagcg tctggaagat cacgtacaaa 2820gacacggtcc
agcttcggcg gaagctggag ttctttacgt atagccggtt tgacatggag
2880ttcacgtttg tcgtcacgag caattatacg gatgcgaaca atggtcacgc
gcttaatcaa 2940gtctaccaga tcatgtacat cccgccgggt gcgccgatcc
cgggtaagtg gaatgattac 3000acgtggcaaa cgagcagcaa cccgagcgtc
ttttacacgt acggtgcgcc gccggcgcgg 3060atcagcgtcc cgtacgtcgg
tatcgcgaat gcgtatagcc atttttacga tggttttgcg 3120aaagtcccgc
ttgcgggtca agcgagcacg gagggtgaca gcctttatgg tgcggcgagc
3180cttaatgact tcggtagcct tgcggtccgg gtcgtcaatg accacaaccc
gacgaaactt 3240acgagcaaaa tccgggtcta catgaaaccg aagcacgtcc
gggtctggtg tccgcggccc 3300cctcgagcag tcccatacta cggaccaggg
gttgactaca aggatggact agccccactg 3360ccagagaaag gcttgacaac
ctatggtttt ggccaccaaa ataaggcagt gtacacggca 3420ggttacaaaa
tttgcaatta ccacctcgcc acccaggaag acttacaaaa tgcggtaaac
3480attatgtgga ttagagacct tttagtagtg gaatccaaag cccaaggcat
agactcaatt 3540gctagatgta actgccacac tggagtgtac tactgtgaat
ccaggaggaa gtactacccg 3600gtctctttta ctggccccac ctttcagtac
atggaagcaa atgagtacta tccagcccga 3660taccaatccc acatgttaat
tggccatggt tttgcatctc caggggactg tggtgggatt 3720ctcaggtgcc
aacatggagt aattggaatc attacagctg gaggagaagg cctagtcgct
3780ttctcggaca tcagagatct gtacgcatac gaggaggagg ctatggagca
gggagtctcc 3840aactatattg agtcccttgg ggctgcattt gggagtggat
tcacccagca aataggaaac 3900aaaatttcag aactcactag catggtcacc
agcactataa ctgagaaact actaaagaat 3960ctcattaaaa taatttcatc
ccttgttatc atcaccagaa actatgaaga cacgaccaca 4020gtgctggcta
cccttgctct cctcggttgt gatgcgtccc catggcaatg gctaaagaag
4080aaagcctgtg acatcttgga aatcccctac atcatgcgac agggcgatag
ctggttgaag 4140aagtttacag aggcatgcaa tgcagccaag ggattggaat
gggtgtctaa taaaatatcc 4200aaatttattg actggctcaa agagaagatc
attccacagg ctagagacaa gctagagttt 4260gttaccaaac tgaagcaact
agaaatgttg gagaaccaaa ttgcaaccat tcatcaatcg 4320tgcccaagtc
aggagcatca agaaatcctg ttcaataacg tgagatggtt atccatacag
4380tcaaagagat ttgccccgct ctatgcggtt gaggctaaga gaatacaaaa
gttagagcac 4440acgattaaca actacgtaca gttcaagagc aaacaccgta
ttgaaccagt atgtttgttg 4500gtgcacggta gcccaggcac gggcaagtca
gttgccacca atttaattgc cagagcaata 4560gcagagaagg agaacacctc
cacatactca ctaccaccag atccctccca tttcgatggg 4620tacaagcaac
aaggtgtggt gatcatggat gatttgaatc agaacccaga cggagcagac
4680atgaagctgt tttgtcagat ggtctccact gtagaattca taccaccaat
ggcttcgcta 4740gaagaaaagg gtattttgtt cacatctaat tacgttttgg
cctcaaccaa ttccagtcgc 4800atcaccccac caactgttgc gcacagcgat
gccctagcca ggcgctttgc atttgacatg 4860gacatacaaa tcatgagcga
gtattctaga gatggaaaat tgaacatggc gatggcaact 4920gaaatgtgta
agaactgtca tcaaccagca aacttcaaga gatgttgccc attggtgtgt
4980ggcaaagcca tccagctgat ggacaaatct tccagagtca gatatagtat
agatcagatt 5040actaccatga ttattaatga gaggaacaga agatcaagta
tcggtaattg catggaggca 5100cttttccaag gtcctcttca atacaaagac
ctgaaaatag acattaagac cacacctcct 5160cctgagtgca tcaatgattt
gctccaagca gttgattctc aagaggtaag agactactgt 5220gagaagaagg
gttggatagt agacatcact agtcaggtgc aaaccgaaag aaacatcaat
5280agagcaatga ctattcttca ggcggtcacc acatttgccg cagttgctgg
agtggtgtat 5340gtgatgtaca aactctttgc agggcatcaa ggagcgtata
cagggcttcc caataagaga 5400cccaatgtcc ccaccatcag gactgccaag
gttcagggcc caggatttga ctacgcagtg 5460gcaatggcca aaagaaacat
tcttacggca actaccatta agggagagtt cacaatgctc 5520ggagtgcatg
ataatgtggc cattctacca acccacgcat caccgggtga aacaatagtc
5580attgatggca aggaagtaga ggtactggat gctaaagccc tggaggacca
ggccgggacc 5640aacctagaaa tcaccattgt cactcttaag agaaatgaga
agttcaggga catcagacca 5700cacatcccca ctcaaatcac tgagacaaat
gatggagttt taattgtgaa cactagtaag 5760taccccaaca tgtatgttcc
tgtcggtgct gtgactgaac aggggtatct caatctcggt 5820ggacgccaaa
ctgctcgtac tttaatgtac aactttccaa cgagagcagg tcaatgtggt
5880ggagttatca cctgcactgg caaggtcatc gggatgcatg ttggtgggaa
cggttcacat 5940gggttcgcag cagccctgaa gcgatcctat ttcactcaga
gtcaaggtga aatccagtgg 6000atgagaccat caaaagaagt gggctacccc
gttattaatg ctccatctaa aactaaactg 6060gaacccagtg cattccatta
tgtgtttgaa ggtgtcaagg aaccagctgt gctcaccaaa 6120agtgacccca
gattgaagac agattttgaa gaggctatct tttccaagta tgtgggaaat
6180aagattactg aagtggatga gtacatgaaa gaagctgtcg atcattacgc
aggccagctc 6240atgtcactag acatcaacac agaacaaatg tgccttgagg
atgcaatgta tggcactgac 6300ggtctcgaag ctctagacct cagtaccagt
gctgggtatc cctatgtggc aatggggaaa 6360aagaaaagag acattttgaa
taagcaaacc agagacacaa aggaaatgca aaggcttctg 6420gacacctatg
gtattaattt acctttagtc acctatgtga aagatgagct tagatccaag
6480accaaagtgg aacagggcaa gtccaggcta attgaggcct caagtctcaa
tgactctgtc 6540gccatgagga tggcttttgg caacttgtac gcagcattcc
acaagaaccc aggtgtagtg 6600acaggatcgg ctgttggctg tgacccagat
ttgttttgga gtaaaatacc agtcctcatg 6660gaggaaaaac tctttgcatt
tgattacacg ggttatgatg cttcactaag ccccgcctgg 6720tttgaggctc
tcaagatggt tctagagaaa attgggtttg gtgacagagt ggattacatt
6780gattatctga atcactcgca ccatctatat aaaaataaga catattgtgt
taagggcggc 6840atgccatctg gctgctctgg cacctcaatt tttaattcaa
tgattaataa tctaataatc 6900aggactctct tactgaaaac ctacaagggc
atagatttag accacctgaa gatgatagcc 6960tatggtgatg atgtaattgc
ttcctacccc catgaggttg atgctagtct cctagcccaa 7020tcaggaaaag
actatggact aaccatgaca ccagctgaca aatcagccac ctttgaaaca
7080gtcacatggg agaatgtaac attcttgaaa agattcttta gagcagatga
aaagtatccc 7140tttctggtac atccagtgat gccaatgaaa gaaattcacg
aatcaattag atggactaaa 7200gatcccagaa acactcagga tcatgttcgc
tcactgtgct tattggcttg gcacaatggc 7260gaggaagagt acaataaatt
tttagctaag attagaagtg tgccaatcgg aagagcatta 7320ctgctccctg
agtactccac attgtaccgc cgttggctcg actcatttta gtaaccctac
7380ctcagtcgaa ttggattggg tcatactgtt gtaggggtaa atttttcttt
aattcggag 74395923DNAArtificialprimer 59attggcacac tcctgatttt agc
236022DNAArtificialprimer 60caaaggatcc cagaaacaca ca
226123DNAArtificialTaqMan probe 61ttcttcttcg ccgttgtgcc agg
236222DNAArtificialprimer 62ctaaagatcc cagaaacact ca
226323DNAArtificialprimer 63attggcacac ttctaatctt agc
236423DNAArtificialprobe 64ctcttcctcg ccattgtgcc aag
2365690DNAArtificialSabin 2 sequence with decreased number of CG
dinucleotides 65acggccgtgg agacaggggc taccaatcca ttggtgcctt
cagacactgt gcaaactaga 60catgtcatcc agagaagaac tagatcagag tccactgttg
agtcattctt tgcaagaggg 120gcttgtgtgg ctatcattga ggtggacaat
gatgcaccaa caaagagagc cagcagattg 180ttttcagttt ggaaaataac
ttacaaagat actgttcaac tgagaagaaa actggaattt 240ttcacatatt
caagatttga catggagttc acttttgtgg tcacctcaaa ctacattgat
300gcaaataatg gacatgcatt gaaccaagtt tatcagataa tgtatatacc
accaggagca 360cctatccctg gtaaatggaa tgactatact tggcagactt
cctctaaccc atcagtgttt 420tacacctatg gggcaccccc agcaagaata
tcagtgccct atgtgggaat tgctaatgca 480tattcccact tttatgatgg
gtttgcaaaa gtaccactag caggtcaagc ctcaactgaa 540ggtgattcat
tgtatggtgc tgcctcactg aatgattttg gatcactggc tgttagagtg
600gtaaatgatc acaaccccac taggctcacc tccaagatca gagtgtacat
gaagccaaag 660catgtcagag tctggtgccc aagacctcct
69066690DNAArtificialSabin 2 sequence with reduced number of CG and
TA dinucleotides 66acggccgtgg agacaggggc aaccaatcca ttggtgcctt
cagacactgt gcaaacaaga 60catgtcatcc agagaagaac aagatcagag tccactgttg
agtcattctt tgcaagaggg 120gcttgtgtgg caatcattga ggtggacaat
gatgcaccaa caaagagagc cagcagattg 180ttttcagttt ggaaaatcac
ttacaaagac actgttcaac tgagaagaaa actggaattt 240ttcacatatt
caagatttga catggagttc acttttgtgg tcacctcaaa ctacattgat
300gcaaacaatg gacatgcatt gaaccaagtt tatcagatca tgtacattcc
accaggagca 360ccaatccctg gaaaatggaa tgactacact tggcagactt
cctcaaaccc atcagtgttt 420tacacctatg gggcaccccc agcaagaatt
tcagtgccct atgtgggaat tgcaaatgca 480tattcccact tttatgatgg
gtttgcaaaa gtgccactgg caggtcaagc ctcaactgaa 540ggtgattcat
tgtatggtgc tgcctcactg aatgattttg gatcactggc tgtgagagtg
600gtgaatgatc acaaccccac aaggctcacc tccaagatca gagtgtacat
gaagccaaag 660catgtcagag tctggtgccc aagacctcct
69067690DNAArtificialSabin 2 sequence with increased CG
dinucleotide content 67acggccgtcg agacgggcgc gacgaatccg ctcgtgccgt
cggacaccgt gcaaacgcgc 60cacgtcatcc agcgacgaac gcgatcggag tcgacggtcg
agtcgttctt cgcgcgcggc 120gcgtgcgtcg cgatcatcga ggtcgacaac
gacgcgccga cgaagcgcgc gtcgcgattg 180ttttcggttt ggaaaataac
gtacaaagat acggttcaac tgcgacgcaa actcgaattt 240ttcacgtatt
cgcgattcga catggagttc acgttcgtcg tcacgtcgaa ctacatcgac
300gcgaataacg gacacgcgtt gaaccaagtt tatcagataa tgtatatacc
gcccggcgcg 360ccgatcccgg gtaaatggaa cgactatacg tggcagacgt
cgtcgaaccc gtcggtgttt 420tacacgtacg gcgcgccgcc ggcgcgaata
tcggtgccgt acgtcggaat cgcgaacgcg 480tattcgcact tttacgacgg
gttcgcgaaa gtaccgctcg cgggtcaagc gtcgacggaa 540ggcgattcgt
tgtacggcgc ggcgtcgctg aacgatttcg gatcgctcgc ggttcgcgtc
600gtaaacgatc acaacccgac gcggctcacg tcgaagatcc gcgtgtacat
gaagccgaag 660cacgtccgcg tctggtgccc gcgaccgcct
69068690DNAArtificialSabin 2 sequence with increased numbers of CG
and TA dinucleotides 68acggccgtcg agacgggcgc gacgaatccg ctcgtaccgt
cggataccgt acaaacgcgc 60cacgtaatac agcgacgtac gcgtagcgag tcgacggtcg
agtcgttctt cgcgcgcggc 120gcgtgcgtcg cgattatcga ggtcgataac
gacgcgccga cgaagcgcgc gtcgcgatta 180ttttcggtat ggaaaataac
gtataaagat acggtacaac tacgacgtaa actcgaattt 240tttacgtatt
cgcgattcga tatggagttt acgttcgtcg ttacgtcgaa ctatatcgac
300gcgaataacg gacacgcgtt aaaccaagta tatcagataa tgtatatacc
gcccggcgcg 360ccgatcccgg gtaaatggaa cgactatacg tggcagacgt
cgtcgaaccc gtcggtattt 420tatacgtacg gcgcgccgcc ggcgcgtata
tcggtaccgt acgtcggtat cgcgaacgcg 480tattcgcact tttacgacgg
gttcgcgaaa gtaccgctcg cgggtcaagc gtcgacggaa 540ggcgattcgt
tatacggcgc ggcgtcgctt aacgatttcg gatcgctcgc ggtacgcgtc
600gtaaacgatc ataacccgac gcggcttacg tcgaagatac gcgtatatat
gaagccgaag 660cacgtacgcg tatggtgccc gcgaccgcct
69069690DNAArtificialexemplary deoptimized Sabin 2 sequence
69acggccgtcg agacgggtgc gacgaatccg cttgtcccgt cggacacggt ccaaacgcgg
60catgtcatac agcggcggac gcggtcggag tcgacggtcg agtcgttctt tgcgcggggt
120gcgtgcgtcg cgataataga ggtggacaat gatgcgccga cgaaacgggc
gtcgcggctt 180ttttcggtct ggaaaataac gtacaaagat acggtccaac
ttcggcggaa acttgaattt 240ttcacgtatt cgcggtttga catggagttc
acgtttgtcg tcacgtcgaa ctacatagat 300gcgaataacg gtcatgcgct
gaaccaagtc tatcagataa tgtatatacc gccgggtgcg 360ccgataccgg
gtaaatggaa tgactatacg tggcagacgt cgtcgaaccc gtcggtcttt
420tacacgtatg gtgcgccgcc ggcgcggatc tcggtcccgt acgtcggtat
cgcgaatgcg 480tattcgcatt tttatgatgg ttttgcgaaa gtcccgcttg
cgggtcaagc gtcgacggaa 540ggtgattcgc tttacggtgc ggcgtcgctt
aatgattttg gttcgcttgc ggtccgggtc 600gtcaatgatc ataacccgac
gcggcttacg tcgaaaatac gggtctacat gaagccgaaa 660catgtccggg
tctggtgccc gcggcctcct 69070690DNAArtificialSabin 2 sequence that
include MEF1 codons 70acggccgtag agacaggggc caccaaccca ttggtgcctt
cagacacggt acaaactcgt 60cacgtcatcc aaagacggac gcggtcggag tctacggttg
agtctttctt cgcaagagga 120gcttgtgtgg ccattattga agtggataat
gatgctccaa caaagcgtgc cagtagatta 180ttttcagtct ggaagataac
ttacaaagac accgttcagt taagacgtaa gttggagttc 240tttacatatt
caaggtttga catggagttc acctttgtgg ttacatccaa ttatattgat
300gcaaacaatg ggcacgcact aaatcaagtt taccagataa tgtacatacc
acctggggca 360ccgatccctg gcaagtggaa tgattacaca tggcaaacgt
catctaaccc atcagtgttt 420tacacttacg gggcacctcc agctagaata
tcagtgccct acgtgggcat tgccaatgca 480tattctcatt tttacgatgg
gtttgccaaa gtaccactag caggccaagc ctcaacagag 540ggtgactcgc
tgtatggagc ggcttcattg aatgacttcg gatcactggc tgttcgagtg
600gtgaatgacc acaaccctac gcggctcact tcaaaaatca gagtgtacat
gaaaccaaag 660cacgtcagag tgtggtgtcc gcgaccccct 690
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