Adipate (ester Or Thioester) Synthesis

Abstract

The present invention relates to a method for preparing an adipate ester or thioester. The invention further relates to a method for preparing adipic acid from said ester or thioester. Further the invention provides a number of methods for preparing an intermediate for said ester or thioester. Further the invention relates to a method for preparing 6-amino caproic acid (6-ACA), a method for preparing 5-formyl valeric acid (5-FVA), and a method for preparing caprolactam. Further, the invention relates to a host cell for use in a method according to the invention.

Description

CROSS-REFERENCES TO RELATED APPLICATIONS

[0001] This application is a continuation of application Ser. No. 13/841,142, filed Mar. 15, 2013, which is a continuation of application Ser. No. 13/572,346, filed Aug. 10, 2012 (abandoned), which is a continuation of application Ser. No. 12/921,547, filed Dec. 13, 2010, which is a 371 of PCT/NL2009/050115, filed Mar. 11, 2009, which claims priority to European Patent Application No. 08152595.8, filed Mar. 11, 2008, the entire contents of each of which is hereby incorporated by reference in this application.

[0002] The present invention relates to a method for preparing an adipate ester or thioester. The invention further relates to a method for preparing adipic acid from said ester or thioester. Further the invention provides a number of methods for preparing an intermediate for said ester or thioester. Further the invention relates to a method for preparing 6-amino caproic acid (6-ACA), a method for preparing 5-formyl valeric acid (5-FVA), and a method for preparing caprolactam. Further, the invention relates to a host cell for use in a method according to the invention.

BACKGROUND OF THE INVENTION

[0003] Adipic acid (hexanedioic acid) is inter alia used for the production of polyamide. Further, esters of adipic acid may be used in plasticisers, lubricants, solvent and in a variety of polyurethane resins. Other uses of adipic acid are as food acidulans, applications in adhesives, insecticides, tanning and dyeing. Known preparation methods include the oxidation of cyclohexanol or cyclohexanone or a mixture thereof (KA oil) with nitric acid.

[0004] Caprolactam is a lactam which may also be used for the production of polyamide, for instance nylon-6 or caprolactam-laurolactam copolymers (nylon-6,12). Various manners of preparing caprolactam from bulk chemicals are known in the art and include the preparation of caprolactam from cyclohexanone, toluene, phenol, cyclohexanol, benzene or cyclohexane.

[0005] The intermediate compounds, such as cyclohexanol, cyclohexanone or phenol, for preparing adipic acid or caprolactam are generally obtained from mineral oil. In view of a growing desire to prepare materials using more sustainable technology it would be desirable to provide a method wherein adipic acid or caprolactam is prepared from an intermediate compound that can be obtained from a biologically renewable source or at least from an intermediate compound that is converted into adipic acid or caprolactam using a biochemical method.

[0006] In U.S. Pat. No. 5,487,987, a method is described for the production of adipic acid, wherein use is made of a bacterial cell, wherein a carbon source is converted into 3-dehydroshikimate by the enzymes in the common pathway or aromatic amino acid biosynthesis of the bacterial cell, to produce cis, cis muconic acid, by the biocatalytic conversion of 3-dehydroshikimate. The cis, cis muconic acid is thereafter chemically reduced (using a platinum catalyst) to produce adipic acid. Thus, the final step requires chemical catalysis. It is further envisaged by the present inventors that the aromatic intermediates formed in the bacterial cell, may be toxic to the cell, likely requiring their concentration to be low in vivo as well as in the cell culture.

[0007] It is known to prepare caprolactam from 6-aminocaproic acid (6-ACA), e.g. as described in U.S. Pat. No. 6,194,572. As disclosed in WO 2005/068643, 6-ACA may be prepared biochemically by converting 6-aminohex-2-enoic acid (6-AHEA) in the presence of an enzyme having .alpha.,.beta.-enoate reductase activity. The 6-AHEA may be prepared from lysine, e.g. biochemically or by pure chemical synthesis. Although 6-ACA can be prepared via the reduction of 6-AHEA by the methods disclosed in WO 2005/068643, the inventors have found that--under the reduction reaction conditions--6-AHEA may spontaneously and substantially irreversible cyclise to form an undesired side-product, notably .beta.-homoproline. This cyclisation may be a bottleneck in the production of 6-ACA, and lead to a considerable loss in yield.

SUMMARY OF THE INVENTION

[0008] It is an object of the invention to provide a novel method for preparing adipic acid or caprolactam--which may, inter alia, be used for the preparation of polyamide--or an intermediate compound for adipic acid or caprolactam, that can serve as an alternative to known methods.

[0009] It is a further object to provide a novel method that would overcome one or more of the drawbacks mentioned above.

[0010] One or more further objects which may be solved in accordance with the invention will follow from the description, below.

[0011] The inventors have realised that adipate (or a ester or thioester thereof) can be produced from succinate (or a ester or thioester thereof). In particular, the inventors concluded that an adipate (thio)ester may be prepared from succinate (thio)ester and acetate (thio)ester via a sequence of specific reactions, e.g. similar to reverse beta-oxidation and fatty acid biosynthesis in living cells, as shown in FIG. 2. Herein, each R independently represents an activating group (facilitating the reaction), e.g. as described herein below. Each X independently represents an S or an O. ED/EDH.sub.2 exemplify oxidised/reduced electron donors, for example NAD/NADH, NADP/NADPH, FAD/FADH.sub.2, or oxidised ferredoxin/reduced ferredoxin. Actual transfer of electrons may occur directly or may be mediated by intermediate electron carriers such as coenzymes or electron transfer flavo proteins (ETF). Y--NH.sub.2 refers to an amino donor, e.g. as described herein below.

[0012] Thus, the inventors came to the conclusion that it should be possible to biocatalytically prepare adipic acid (or a ester or thioester thereof) via a cascade of reactions from succinate (or a ester or thioester thereof) and acetate (or a ester or thioester thereof). Further, they realised that adipic acid may be converted biocatalytically into 5-formylpentanoic acid (`5-FVA`, 5-formylvaleric acid), which is an intermediate for the preparation of 6-ACA, and that for this conversion a specific biocatalyst may be used.

[0013] Accordingly, the present invention relates to a method for preparing an adipate ester or thioester from a succinate ester or thioester, via a plurality of reactions, wherein at least one of the reactions is catalysed by a biocatalyst.

[0014] In particular, the invention relates to a method for preparing an adipate ester or adipate thioester, comprising converting a 2,3-dehydroadipate (IUPAC name: 5-carboxy-2-pentanoate) ester or 2,3-dehydroadipate thioester into the adipate ester or thioester in the presence of a biocatalyst.

[0015] When referred herein to carboxylic acids or carboxylates, e.g. 6-ACA, another amino acid, 5-FVA, adipic acid/adipate, succinic acid/succinate, acetic acid/acetate, these terms are meant to include the protonated carboxylic acid (free acid), the corresponding carboxylate (its conjugated base) as well as a salt thereof, unless specified otherwise. When referring herein to amino acids, e.g. 6-ACA, this term is meant to include amino acids in their zwitterionic form (in which the amino group is in the protonated and the carboxylate group is in the deprotonated form), the amino acid in which the amino group is protonated and the carboxylic group is in its neutral form, and the amino acid in which the amino group is in its neutral form and the carboxylate group is in the deprotonated form, as well as salts thereof.

[0016] When referred to ester or thioester of a carboxylic acid, e.g. adipate ester or thioester, acetate ester of thioester, succinate ester or thioester, these terms are meant to include any activating group, in particular any biological activating group, including coenzyme A (also referred to as CoA), phospho-pantetheine, which may be bound to an acyl or peptidyl carrier protein (ACP or PCP, respectively), N-acetyl-cysteamine, methyl-thio-glycolate, methyl-mercapto-propionate, ethyl-mercapto-propionate, methyl-mercapto-butyrate, methyl-mercapto-butyrate, mercaptopropionate and other esters or thioesters providing the same or a similar function. In case living cells are used as a biocatalyst, the ester or thioester, in particular CoA, may be produced by the used biocatalyst or originate from an organism also capable of producing a suitable enzyme for catalysing the reaction. CoA-ligase and CoA-transferases have been identified in many organisms and may provide the desired activated esters or thioesters.

BRIEF DESCRIPTION OF THE DRAWINGS

[0017] The invention will now be described in more detail with reference to the accompanying figures, in which:

[0018] FIG. 1 shows the preparation of the adipate ester or thioester from the succinate ester or thioester;

[0019] FIG. 2 is an overview of cloning strategy;

[0020] FIG. 3 shows an adipate biosynthetic pathway; and

[0021] FIG. 4 shows a cloning strategy for assembly of an adipate pathway.

DETAILED DESCRIPTION OF PREFERRED EMBODIMENTS

[0022] The preparation of the adipate ester or thioester from the succinate ester or thioester may in particular comprise the following reaction steps (numbers between parentheses also correspond to FIG. 1):

(1) providing a succinate ester or thioester and reacting said ester or thioester with an acetate ester or thioester, thereby forming a 3-oxoadipate ester or thioester; (2) hydrogenating the 3-oxo group of the 3-oxoadipate ester or thioester thereby forming a 3-hydroxyadipate ester or thioester; (3) dehydrating the 3-hydroxyadipate ester or thioester thereby forming a 2,3-dehydroadipate ester or thioester; and (4) hydrogenating of the C--C double bond of the 2,3-dehydroadipate ester or thioester, thereby forming an adipate ester or thioester.

[0023] The invention also relates to a method for preparing an intermediate compound, suitable for use in a method for preparing adipic acid, comprising carrying out one or more of said reactions steps 1-4, in the presence of a biocatalyst catalyzing such reaction step.

[0024] In an embodiment, the adipate ester or thioester is converted into 5-FVA (5).

[0025] If desired, the adipate ester or thioester can be converted into adipic acid. This may be accomplished by hydrolysing the ester bond or thioester bond (7), thereby forming adipic acid or by a transfer reaction, wherein `the alcohol` or `thiol` moiety (such as CoA) is transferred from the adipate ester or thioester to an acid different from adipic acid, thereby forming adipic acid and a (thio)ester of the acid different from adipic acid (7). If succinic acid or acetate is used as the different acid, this reaction may be advantageous in that the alcohol or thiol moiety, such as CoA may be recycled. E.g. adipyl-CoA+succinate or acetate may be converted (usually in the presence of a CoA transferase) to form succinyl-CoA or acetyl-CoA+adipic acid. The succinyl-CoA or acetyl-CoA may then be used as a starting compound in a method of the invention.

[0026] Adipic acid (or a ester or thioester thereof) may, e.g., be converted into 5-FVA (8).

[0027] In an embodiment, 5-FVA, obtained in a method of the invention is converted into 6-ACA (6). Thereafter, 6-ACA may be converted into caprolactam, e.g. in a manner known in the art per se.

[0028] In a further embodiment, adipic acid or caprolactam obtained in a method according to the invention is used for the preparation of polyamide.

[0029] The term "a" or "an" as used herein is defined as "at least one" unless specified otherwise.

[0030] When referring to a noun (e.g. a compound, an additive etc.) in the singular, the plural is meant to be included.

[0031] When referring to a compound of which several isomers exist (e.g. a cis and a trans isomer, an R and an S enantiomer), the compound in principle includes all enantiomers, diastereomers and cis/trans isomers of that compound that may be used in the particular method of the invention.

[0032] When an enzyme is mentioned with reference to an enzyme class (EC) between brackets, the enzyme class is a class wherein the enzyme is classified or may be classified, on the basis of the Enzyme Nomenclature provided by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB), which nomenclature may be found at http://www.chem.qmul.ac.uk/iubmb/enzyme/. Other suitable enzymes that have not (yet) been classified in a specified class but may be classified as such, are meant to be included.

[0033] When referred herein to a protein by reference to a accession number, this number in particular is used to refer to a protein having a sequence as found in Uniprot on 11 Mar. 2008, unless specified otherwise.

[0034] The term "homologue" is used herein in particular for polynucleotides or polypeptides having a sequence identity of at least 30%, preferably at least 40%, more preferably at least 60%, more preferably at least 65%, more preferably at least 70%, more preferably at least 75%, more preferably at least 80%, in particular at least 85%, more in particular at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99%. The term homologue is also meant to include nucleic acid sequences (polynucleotide sequences) which differ from another nucleic acid sequence due to the degeneracy of the genetic code and encode the same polypeptide sequence.

[0035] Sequence identity or similarity is herein defined as a relationship between two or more polypeptide sequences or two or more nucleic acid sequences, as determined by comparing the sequences. Usually, sequence identities or similarities are compared over the whole length of the sequences, but may however also be compared only for a part of the sequences aligning with each other. In the art, "identity" or "similarity" also means the degree of sequence relatedness between polypeptide sequences or nucleic acid sequences, as the case may be, as determined by the match between such sequences. Preferred methods to determine identity or similarity are designed to give the largest match between the sequences tested. In context of this invention a preferred computer program method to determine identity and similarity between two sequences includes BLASTP and BLASTN (Altschul, S. F. et al., J. Mol. Biol. 1990, 215, 403-410, publicly available from NCBI and other sources (BLAST Manual, Altschul, S., et al., NCBI NLM NIH Bethesda, Md. 20894). Preferred parameters for polypeptide sequence comparison using BLASTP are gap open 10.0, gap extend 0.5, Blosum 62 matrix. Preferred parameters for nucleic acid sequence comparison using BLASTN are gap open 10.0, gap extend 0.5, DNA full matrix (DNA identity matrix).

[0036] In a method of the invention, a biocatalyst is used, i.e. at least one reaction step in the method is catalysed by a biological material or moiety derived from a biological source, for instance an organism or a biomolecule derived there from. The biocatalyst may in particular comprise one or more enzymes. The biocatalyst may be used in any form. In an embodiment, one or more enzymes are used isolated from the natural environment (isolated from the organism it has been produced in), for instance as a solution, an emulsion, a dispersion, (a suspension of) freeze-dried cells, a lysate, or immobilised on a support. The use of an enzyme isolated from the organism it originates from may in particular be useful in view of an increased flexibility in adjusting the reaction conditions such that the reaction equilibrium is shifted to the desired side.

[0037] In an embodiment, one or more enzymes form part of a living organism (such as living whole cells). The enzymes may perform a catalytic function inside the cell. It is also possible that the enzyme may be secreted into a medium, wherein the cells are present.

[0038] Living cells may be growing cells, resting or dormant cells (e.g. spores) or cells in a stationary phase. It is also possible to use an enzyme forming part of a permeabilised cell (i.e. made permeable to a substrate for the enzyme or a precursor for a substrate for the enzyme or enzymes).

[0039] A biocatalyst used in a method of the invention may in principle be any organism, or be obtained or derived from any organism. The organism may be an eukaryote, a bacterium or an archea. In particular the organism may be selected from animals (including humans), plants, bacteria, archaea, yeasts and fungi.

[0040] Suitable bacteria may in particular be selected amongst the group of Absidia, Achromobacter, Acinetobacter, Agrobacterium, Aeromonas, Alcaligenes, Arthrobacter, Arzoarcus, Azomonas, Azospirillum, Azotobacter, Bacillus, Beijerinckia, Bradyrhizobium, Burkholderia, Byssochlamys, Citrobacter, Clostridium, Comamonas, Corynebacterium, Deinococcus, Escherichia, Enterobacter, Flavobacterium, Fusobacterium, Gossypium, Klebsiella, Lactobacillus, Listeria, Megasphaera, Micrococcus, Mycobacterium, Norcadia, Porphyromonas, propionibacterium, Pseudomonas, Ralstonia, Rhizobium, Rhodopseudomonas, Rhodospirillum, Rodococcus, Roseburia, Shewanella, Streptomycetes, Xanthomonas, Xylella, Yersinia, Treponema, Vibrio, Streptococcus, Lactococcus, Zymomonas, Staphylococcus, Salmonella, Brucella, Microscilla.

[0041] Suitable eukaryotes can be selected in particular from the group of fungi; metazoan; Viridiplantae (in particular Arabidopsis and Chlamydomonadales); Diplomonads (in particular Giardiinae); Entamoebidae (in particular Entaboeba); Euglenozoa (in particular Euglena); Pelobiontida (in particular Mastigamoeba); and Alveolata (in particular Cryptosporidium).

[0042] Suitable fungi in particular include fungi and yeasts selected amongst the group of Rhizopus, Neurospora, Penicillium, Aspergillus, Piromyces, Trichosporon, Candida, Hansenula, Kluyveromyces, Saccharomyces, Rhodotorula, Schizosaccharomyces, Yarrowia (such as Yarrowia lypolytica).

[0043] Suitable metazoan in particular include metazoan selected amongst the group of mammals (including human), more in particular selected from the group of Leporidae, Muridae, Suidae, Bovidae, homimidae. A biocatalyst can originate from any part of a metazoan, e.g. liver, pancreas, brain, kidney, heart or other organ. Suitable metazoan may also include in particular Caenorhabditis and Drosophila.

[0044] Organisms which in particular may provide a suitable biocatalyst for a specific reaction step are mentioned below, when describing specific reaction steps of a method of the invention.

[0045] It will be clear to the person skilled in the art that use can be made of a naturally occurring biocatalyst (wild type) or a mutant of a naturally occurring biocatalyst with suitable activity in a method according to the invention. Properties of a naturally occurring biocatalyst may be improved by biological techniques known to the skilled person in the art, such as e.g. molecular evolution or rational design.

[0046] Mutants of wild-type biocatalysts can for example be made by modifying the encoding DNA of an organism capable of acting as a biocatalyst or capable of producing a biocatalytic moiety (such as an enzyme) using mutagenesis techniques known to the person skilled in the art (random mutagenesis, site-directed mutagenesis, directed evolution, gene recombination, etc.). In particular the DNA may be modified such that it encodes an enzyme that differs by at least one amino acid from the wild-type enzyme, so that it encodes an enzyme that comprises one or more amino acid substitutions, deletions and/or insertions compared to the wild-type, or such that the mutants combine sequences of two or more parent enzymes or by effecting the expression of the thus modified DNA in a suitable (host) cell. The latter may be achieved by methods known to the skilled person in the art such as codon optimisation or codon pair optimisation, e.g. based on a method as described in WO 2008/000632.

[0047] A mutant biocatalyst may have improved properties, for instance with respect to one or more of the following aspects: selectivity towards the substrate, activity, stability, solvent tolerance, pH profile, temperature profile, substrate profile, susceptibility to inhibition, cofactor utilisation and substrate-affinity. Mutants with improved properties can be identified by applying e.g. suitable high through-put screening or selection methods based on such methods known to the skilled person in the art.

[0048] The substrate specificity of enzymes acting on alkyl or alkyl esters or thioesters can be modified. Molecular evolution to create diversity followed by screening for desired mutants and/or rational engineering of substrate binding pockets may be utilised. Techniques to modify the substrate specificity of an enzyme used in a method of the invention may be based on those described in the art. For instance, rational engineering employing structural and sequence information to design specific mutations has been utilised to modify the substrate specificity of the acyl transferase domain 4 from the erythromycin polyketide synthase to accept alternative acyl donors. It has been shown that modifying the proposed substrate binding site resulted in a modified binding pocket able to accommodate alternative substrates resulting in a different product ratio (Reeves, C. D.; Murli, S.; Ashley, G. W.; Piagentini, M.; Hutchinson, C. R.; McDaniel, R. Biochemistry 2001, 40(51), 15464-15470). Both rational design and molecular evolution approaches have been used to alter the substrate specificity of the biocatalyst BM3 resulting in a large number of mutants capable of oxidizing a large variety of different alkenes, cycloalkenes, arenes and heteroarenes instead or in addition to the natural substrate of medium chain fatty acids (e.g. myristic acid) (Peters, M. W.; Meinhold, P.; Glieder, A.; Arnold, F. H. Journal of the American Chemical Society 2003, 125(44), 13442-13450; Appel, D.; Lutz-Wahl, S.; Fischer, P.; Schwaneberg, U.; Schmid, R. D. Journal of Biotechnology 2001, 88(2), 167-171 and references therein).

[0049] When referred to a biocatalyst, in particular an enzyme, from a particular source, recombinant biocatalysts, in particular enzymes, originating from a first organism, but actually produced in a (genetically modified) second organism, are specifically meant to be included as biocatalysts, in particular enzymes, from that first organism.

[0050] The Preparation of 3-Oxoadipate (Ester or Thioester) (`Reaction 1`)

[0051] In an embodiment of the invention, 3-oxoadipate (ester or thioester) is prepared from succinate and acetate, which succinate and/or acetate which are usually provided with an activating group, in particular to yield an ester or a thioester, facilitating the reaction.

[0052] The 3-oxoadipate (ester of thioester) may be accomplished biocatalytically or chemically, in particular by a `Claisen condensation`, wherein an acetate ester or thioester and a succinate ester or thioester are coupled

[0053] In a preferred method of the invention, the preparation comprises a biocatalytic reaction in the presence of a biocatalyst capable of catalysing an acyl-group transfer. An enzyme having such catalytic activity may therefore be referred to as an acyltransferase.

[0054] In a preferred method an acyl transfer takes place between two acyl thioesters or acyl esters. Preferred acyl thioesters are acetyl-CoA and succinyl-CoA. Preferably, the said biocatalyst is selective towards the said acyl thioesters.

[0055] The biocatalyst may in particular comprise an enzyme capable of acyl-group transfer selected from the group of acyltransferases (E.C. 2.3.1), preferably from the group of acetyl-CoA:acetyl-CoA C-acetyltransferases (EC 2.3.1.9), acyl-CoA:acetyl-CoA C-acyltransferases (EC 2.3.1.16) and succinyl-CoA:acetyl-CoA C-succinyltransferases (EC 2.3.1.174, also known as beta-ketoadipyl-CoA thiolases). Acyltransferase activity has for instance been described in beta-oxidation, fatty acid biosynthesis, polyketide biosynhesis, or butanoate metabolism in the KEGG (Kyoto Encyclopedia of Genes and Genomes) database.

[0056] An acyltransferase may in particular be an acyltransferase of an organism selected from the group of archae, bacteria and eukaryota.

[0057] In particular, the enzyme may originate from a microorganism that is able to degrade organic compounds comprising an aromatic or alicyclic ring structure, in particular a 5, 6 or 7 membered ring structure. The organic compound may optionally comprise one or more heteroatoms in the ring or as a substituent or a part of a substituent. For instance, the organic moiety may be an aromatic compound, in particular an aromatic comprising a six-membered ring. In particular the aromatic compound may be selected from the group of phenylacetate, benzoate, catechol, protocatechuate and gentisate. The organic compound may be a alicyclic compound, in particular a cyclic alcohol, such as cyclohexanol, a cyclic ketone, such as cyclohexanone, or a cycloalkane, such as cyclohexane. The organic compound may be a lactam, such as caprolactam. In an embodiment the enzyme originates from an organism capable of degrading a dicarboxylic acid (usually O.sub.6--CO, in particular a straight-chain saturated dicarboxylic acid, such as adipic acid.

[0058] In a further embodiment, the enzyme originates from an organism capable of synthesizing 3-keto-adipate e.g. as part of a secondary metabolite (e.g. malonomycin) are preferred, for instance, from Streptomycetes (in particular Streptomyces rimosus), from Actinomycres, from other Actinobacteria or other known secondary metabolite producers.

[0059] Preferred microorganism for providing a biocatalyst capable of catalysing the preparation of 3-oxoadipate (ester or thioester) further include Acinetobacter (in particular Acinetobacter sp. Strain ADP1 and A. calcoaceticus), Agrobacterium (in particular A. tumefaciens), Alicaligenes (in particular Alicaligenes strains D2 and A. eutrophus), Arthrobacter, Arzoarcus (in particular A. evansii), Azomonas, Azotobacter, Bacillus (in particular B. halodurans), Beijerinckia, Bradyrhizobium, Burkholderia, Clostridia (in particular C. kluyveri, C. acetobutylicum, C. beijerinckii), Comamonas, Corynebacterium (in particular C. glutamicum and C. aurantiacum), E. coli, Enterobacter, Flavobacterium, Megasphera (in particular M. elsdenii), Norcadia, Pseudomonas (in particular P, putida, P. aeruginosa and Pseudomonas sp. strain B13), Ralstonia (in particular R. eutropha), Rhizobium, Rhodopseudomonas (in particular R. palustris), Rodococcus (in particular R. erythropolis, R. opacus, and Rodococcus sp strain RHA1), Aspergillus (in particular A. niger), Euglenozoa (in particular Euglena gracilis), Neurospora (in particular N. crassa), Penicillium (in particular P. chrysogenum), Rhodotorula, Saccharomyces, Trichosporon (in particular T. cutaneum).

[0060] In a specific embodiment, the biocatalyst comprises an enzyme comprising an amino acid sequence as identified in any of the SEQUENCE ID's 1-13 or a homologue thereof.

[0061] The Preparation of 3-Hydroxyadipate(Ester or Thioester) (`Reaction 2`)

[0062] In an embodiment, 3-hydroxyadipate(ester or thioester) is prepared from 3-oxoadipate (ester or thioester). Usually, the 3-oxoadipate is provided with an activating group, as indicated above.

[0063] In principle, the 3-hydroxyadipate (ester or thioester) may be prepared chemically, e.g. by selective hydrogenation of the 3-oxo group in 3-oxoadipate (ester or thioester).

[0064] This reaction may particular be performed in the presence of a biocatalyst, catalysing this reaction step, in particular a biocatalyst that is capable of catalysing the reduction of an oxo group, in particular a carbonyl group to a hydroxy group.

[0065] In a specific embodiment, the 3-oxoadipate is present as its thioester with co-enzyme A (hereinafter, the thioester of 3-oxoadipate and co-enzyme A will be referred to as 3-oxoadipyl-CoA).

[0066] In a preferred method of the invention, the preparation comprises a biocatalytic reaction in the presence of a biocatalyst capable of catalysing the reduction of a 3-oxoacyl (ester or thioester) to a 3-hydroxyacyl (ester or thioester).

[0067] An enzyme having such catalytic activity may therefore be referred to as a 3-hydroxyacyl (ester or thioester) dehydrogenase. An enzyme having such catalytic activity toward the 3-hydroxyacyl CoA-thioester may therefore be referred to as a 3-hydroxyacyl-CoA dehydrogenase. Preferably, the said 3-hydroxyacyl-CoA dehydrogenase is selective towards the substrate 3-oxoadipyl-CoA.

[0068] An enzyme capable of catalysing the reduction of 3-oxoacyl (ester or thioester) to a 3-hydroxyacyl (ester or thioester) may in particular be selected from the group of dehydrogenases (E.C. 1.1.1), preferably from the group 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35 and EC 1.1.1.36), 3-hydroxybutanoyl-CoA dehydrogenase (EC 1.1.1.157), 3-hydroxypimeloyl-CoA dehydrogenase (EC 1.1.1.259) and long-chain-3-hydroxyacyl-CoA dehydrogenases (EC 1.1.1.211). The enzymes may use NADH or NADPH as cofactor. 3-Hydroxyacyl-CoA dehydrogenase activity has been described, for example, in fatty acid metabolism, polyketide biosynthesis, polyhydroxyalkanoate metabolism, butanoate metabolism, as well as degradation of aromatic compounds according to the KEGG (Kyoto Encyclopedia of Genes and Genomes) database.

[0069] In particular, microorganisms that are able to degrade an organic compound, as identified above (see `reaction 1`), in particular an aromatic compound, an alicyclic compound or a dicarboxylic acid.

[0070] Other preferred organisms for providing a biocatalyst capable of catalysing the preparation of 3-hydroxyadipate(ester or thioester) include: Acinetobacter (in particular Acinetobacter sp. Strain ADP1 and A. calcoaceticus), Alicaligenes (in particular Alicaligenes strain D2 and A. eutrophus), Arzoarcus (in particular A. evansii), Bacillus (in particular B. halodurans), Bordetella (in particular B. pertussis), Burkholderia (in particular B. pseudomallei and B. xenovorans), Corynebacterium (in particular C. glutamicum, C. aurantiacum and C. efficiens), Deinococcus (in particular D. radiodurans), E. coli, Flavobacterium, Klebsiella (in particular K. pneumonia), Pseudomonas (in particular P. putida and P. fluorescens), Rhodopseudomonas (in particular R. palustris), Rodococcus (in particular R. erythropolis, R. opacus, and Rodococcus sp strain RHA1), Aspergillus (in particular A. niger), Neurospora (in particular N. crassa), Penicillium (in particular P. chrysogenum), Saccharomyces (in particular S. cerevisiae).

[0071] A suitable organism for providing an enzyme of EC1.1.1.35, acting on 3-ketohexanoyl-CoA may be from any organism including mammals, in particular mammals selected from the group of Bos taurus, Rattus norvegicus, Sus scrofa, and Homo sapiens.

[0072] At suitable biocatalyst involved in (anaerobic) fatty acid synthesis, polyketide biosynthesis or polyhydroxyalkanoate metabolism may be from any organism, in particular microorganisms including: Clostridia (in particular C. acetobutylicum and C. kluyven), Euglenozoa (in particular Euglena gracilis), Megasphera (in particular Megasphera elsdenii), Ralstonia (in particular Ralstonia eutropha), and Zoogloea (in particular Zoogloea ramigera).

[0073] In a specific embodiment, the biocatalyst (catalysing `reaction 2`) comprises an enzyme comprising an amino acid sequence as identified in any of the SEQUENCE ID's 15-26, 29 or a homologue thereof. It is envisaged that in particular an enzyme comprising an amino acid sequence according to SEQUENCE ID 26 may catalyse both `reaction 2` and `reaction 3`.

[0074] The Preparation of 2,3-Dehydro Adipate (Ester or Thioester) (`Reaction 3`)

[0075] In an embodiment, 2,3-dehydro adipate (5-carboxy-2-pentenoate) (ester or thioester) is prepared from 3-hydroxyadipate (ester or thioester). Optionally, the 2,3-dehydro adipate and the 3-hydroxyadipate are coupled to a co-enzyme, ACP or another activating group, as indicated above.

[0076] In an embodiment of the invention, the 2,3-dehydro adipate (ester or thioester) is prepared by converting 3-hydroxyadipate (ester or thioester) chemically, e.g. by dehydration in a water free environment in the presence of e.g. sulphuric acid.

[0077] The 2,3-dehydro adipate may in particular be prepared from 3-hydroxyadipate using at least one biocatalyst.

[0078] A preferred biocatalyst is a biocatalyst that is capable of catalysing the dehydration of a 3-hydroxyacyl ester or thioester to a 2-enoyl ester or 2-enoyl thioester thereof.

[0079] In a specific embodiment, the 2,3-dehydro adipate is present as its thioester with co-enzyme A (hereinafter, the thioester of 2,3-dehydro adipate and co-enzyme A will be referred to as 5-carboxy-2-pentenoyl-CoA).

[0080] In a specific embodiment, the biocatalyst catalyses the dehydration of 3-hydroxyadipyl-CoA to 5-carboxy-2-pentenoyl-CoA.

[0081] In particular, the biocatalytic reaction may be carried out in the presence of a biocatalyst capable of catalysing the dehydration of a 3-hydroxyacyl (thio)ester to a 2,3-dehydroacyl thioester.

[0082] An enzyme having such catalytic activity may therefore be referred to as a 3-hydroxyacyl (ester or thioester) dehydratase. An enzyme having such catalytic activity toward the 3-hydroxyacyl CoA-thioester may therefore be referred to as a 3-hydroxyacyl-CoA dehydratase. Preferably, the said 3-hydroxyacyl-CoA dehydratase is selective towards the substrate 3-hydroxyadipyl-CoA.

[0083] An enzyme capable of catalysing the dehydration of 3-hydroxyacyl (ester or thioester) to a 2,3-dehydroacyl (ester or thioester) may in particular be selected from the group of hydrolyases (E.C. 4.2.1), preferably from the group of preferably from the group of enoyl-CoA hydratases (EC 4.2.1.17), 3-hydroxybutyryl-CoA dehydratases (EC 4.2.1.55) and long-chain-enoyl-CoA hydratases (EC 4.2.1.74). 3-Hydroxyacyl-CoA dehydratase activity has been described, for example, in fatty acid metabolism, polyketide synthesis, or butanoate metabolism, as well as degradation of aromatic compounds according to the KEGG database.

[0084] A 3-hydroxyacyl (ester or thioester) dehydratase may be a 3-hydroxyacyl (ester or thioester) dehydratase of an organism selected from the group of archaea, bacteria, and eukaryotes, for instance from the group of yeasts, fungi and mammals.

[0085] In particular, microorganisms that are able to degrade an organic compound, as identified above (see `reaction 1`), in particular an aromatic compound, an alicyclic compound or a dicarboxylic acid, are preferred sources for a biocatalyst catalysing the preparation of 2,3-dehydro adipate (ester or thioester).

[0086] Microorganisms capable of degrading an aromatic compound, an alicyclic compound or a dicarboxylic acid include Acinetobacter (in particular Acinetobacter sp. strain ADP1 and A. calcoaceticus), Alicaligenes (in particular Alicaligenes D2), Aspergillus (in particular A. niger), Azoarcus (in particular A. evansii), Bacillus (in particular B. halodurans), Corynebacterium (in particular C. glutamicum and C. aurantiacum), E. coli, Flavobacterium, Neurospora (in particular N. crassa), Penicillium (in particular P. chrysogenum), Pseudomonas (in particular P. putida and P. fluorescens), Rhodopseudomonas (in particular R. palustris), Rhodococcus (in particular Rhodococcus sp strain RHA1).

[0087] A preferred organism for providing an enzyme of EC4.2.1.17, acting on 3-hydroxyhexanoyl-CoA includes an organism selected from the group of mammals and microorganisms. A suitable enzyme of EC4.2.1.17 from a mammal may in particular be from a mammal selected from the group of Bos taurus, Homo sapiens, Rattus norvegicus, and Sus scrofa. A suitable enzyme of EC4.2.1.17 from a microorganism may in particular be from a microorganism selected from the group of Aeromonas (in particular A. caviae), Clostridium (in particular C. acetobutylicumi), Gossypium (in particular G. hirsutum), Rhodospirillum (in particular R.rubrumi), and Ralstonia (in particular Ralstonia eutropha).

[0088] Preferred also are microorganisms capable of (anaerobic) fatty acid biosynthesis. Such micro-organisms include Clostridia, in particular (C. acetobutylicum and C. kluyveri), Euglenozoa (in particular Euglena gracilis, Megasphera (in particular M. elsdenii), and Saccharomyces (in particular S. cerevisiae).

[0089] A suitable enzyme may in particular comprise an amino acid sequence according to any of the SEQUENCE ID's 14, 27, 28, 30-41, 92, or a homologue thereof

[0090] The Preparation of Adipate (Ester or Thioester) from 2,3-Dehydro Adipate (Ester or Thioester) (`Reaction 4`)

[0091] In an embodiment, adipate (ester or thioester) is prepared from 2,3-dehydro adipate (ester or thioester). Adipate (ester or thioester) may be prepared chemically from 2,3-dehydro adipate (ester or thioester), e.g. by selective hydrogenation of the C.sub.2-C.sub.3 doublebond, or biocatalytically.

[0092] Usually, the 2,3-dehydro adipate is provided with an activating group, as indicated above.

[0093] The adipate (ester or thioester) preferably is prepared from 2,3-dehydro adipate (ester or thioester) using at least one biocatalyst, catalysing the hydrogenation of the carbon-carbon double bond of 5-carboxy-2-pentenoate (ester or thioester).

[0094] In a preferred method of the invention, the preparation comprises a biocatalytic reaction in the presence of a biocatalyst capable of catalysing the reduction of a cis or a trans 2-enoyl (ester or thioester) to an acyl (ester or thioester). The biocatalyst may use a range of electron donors, for example, an electron donor selected from the group of NADH, NADPH, FADH.sub.2 and reduced ferredoxin. The electrons may be transferred directly from the electron donor to the biocatalyst, or, alternatively, mediated, in particular by the so-called electron transfer flavoprotein (ETF). An enzyme having such catalytic activity may therefore be referred to as a 2-enoyl (ester or thioester) reductase (ER). An enzyme having such catalytic activity toward the 2-enoyl CoA-thioester may therefore be referred to as a 2-enoyl-CoA reductase. Preferably, the said 2-enoyl-CoA reductase is selective towards the substrate 2,3-dehydroadipyl-CoA.

[0095] An enzyme capable of catalysing the reduction of 2-enoyl (ester or thioester) may in particular be selected from the group of oxidoreductases (EC 1.3.1 and EC 1.3.99), preferably from the group of enoyl-CoA reductases EC 1.3.1.8, EC 1.3.1.38 and EC 1.3.1.44, from the group of enoyl-[acyl-carrier-protein] reductases EC 1.3.1.9, EC 1.3.1.10 and EC 1.3.1.39, and from the group butyryl-CoA dehydrogenase (EC 1.3.99.2), acyl-CoA dehydrogenase (1.3.99.3) and long-chain-acyl-CoA dehydrogenase (EC 1.3.99.13). Trans-2-enoyl (ester or thioester) reductase activity has been described, for example, in fatty acid metabolism, polyketide synthesis, butanoate metabolism and mitochondrial fatty acid biosynthesis according to the KEGG database.

[0096] An 2-enoyl (ester or thioester) reductase may in principle be obtained or derived from any organism. In particular the organism can be selected from bacteria, archaea, or eukariotes, such as from the group of yeasts, fungi, protists, plants and animals (including human).

[0097] In an embodiment, the organism may be selected from the following bacteria: E. coli, Vibrio, Bacillus (in particular B. subtilis), Clostridia (in particular C. kluyveri, C. acetobutylicum, C. beijerinckii and C. perfringens), Streptomyces (in particular S. coelicolor and S. avermitilis), Pseudomonas (in particular P. putida and P. aeruginosa), Shewanella, Xanthomonas, Xylella, Yersinia, Treponema (in particular T. denticola), Aeromonas (in particular Aeromonas hydrophila), Microscilla(in particular Microscilla marina), Megasphera (in particular Megasphera elsdenii), Deinococcus (in particular Deinococcus radiourans), Yarrowia (in particular Y. lypolytica) and Eubacterium (in particular E. pyruvativorans).

[0098] In an embodiment an 2-enoyl (ester or thioester) reductase is from an organism selected from the group of Euglenozoa, in particular Euglena gracilis)

[0099] In an embodiment an 2-enoyl (ester or thioester) reductase is from an organism selected from the group of Saccharomyces (in particular S. cerevisiae), Kluyveromyces (in particular K. lactis), Schizosaccharomyces (in particular S. pombe), Candida (in particular C. tropicalis)

[0100] In an embodiment an 2-enoyl (ester or thioester) reductase is from an organism selected from the group of Aspergillus (in particular A. niger and A. nidulans), and Penicillium (in particular P. chrysogenum).

[0101] In an embodiment an 2-enoyl (ester or thioester) reductase is from an organism selected from the group of Arabidopsis (in particular A. thaliana).

[0102] In an embodiment an 2-enoyl (ester or thioester) reductase is from an organism selected from the group of Homo sapiens, Rattus norvegicus, Bos Taurus, Cavia sp., Caenorhabditis elegans, and Drosophila melanogaster.

[0103] A suitable enzyme may in particular comprise an amino acid sequence according to any of the SEQUENCE ID's 42-67, 94, 96, 98, 100, 105, 107, 109, 111, 113, or a homologue thereof, in particular an amino acid sequence according to any of the SEQUENCE ID's 60, 63, 96, 100 or a homologue thereof. Exemplary nucleotide sequences encoding a suitable enzyme for catalysing `reaction 4` are represented by 2-enoyl (ester or thioester) reductase 93, 95, 97, 99, 104, 106, 108, 110 and 112.

[0104] In an advantageous embodiment, in addition to the 2-enoyl (ester or thioester) reductase an ETF is used, which may be beneficial to the activity of said reductase. Such ETF may be obtained or derived from an organism from which a reductase can be obtained or derived, as identified above. In particular it may be obtained or derived from an organism of the same genus, more in particular of the same species, as the reductase that is used. Specific ETF's comprise a amino acid sequences represented by SEQUENCE ID's 102, 103, 115, 116. SEQUENCE ID's 101 and 114 represent nucleotide sequences encoding a specific ETF. Usually, such ETFs comprise two subunits (etfA and etfB) encoded by two different genes. These are generally used together to make the ETF protein active. E.g. the following combinations could be used: Sequence ID 102 with Sequence ID 103 or Sequence ID 116 with Sequence ID 115. The skilled person will be able to selecte other suitable ETF combinations, known in the art per se.

[0105] In an embodiment of the invention a biocatalyst not per se having a desired activity or substrate specificity may be modified by methods known in the art, e.g. by rational design or molecular evolution to create mutants able to catalyse the conversion of 2,3-dehydro adipate (ester or thioester) to adipate (ester or thioester) at a desirable rate or selectivity. Biocatalysts having activity with 2-enoyl-CoA derivatives with a chain length of 6, in particular such biocatalysts from C. kluyveri, Bos taurus, Euglena gracilis, Cavia sp., S. cerevisiae, C. tropicalis, Homo sapiens, and E. pyruvativorans are preferred.

[0106] The Preparation of Adipic Acid (`Reaction 7`)

[0107] In accordance with the invention an adipate ester or thioester may be used to prepare adipic acid, by hydrolysis of the ester or thioester bond. This may be accomplished chemically, e.g. by chemical hydrolysis in the presence of acid or base or biocatalytically.

[0108] In a preferred method of the invention, the preparation comprises a biocatalytic reaction in the presence of a biocatalyst capable of catalysing the hydrolysis of an acyl (thio)ester.

[0109] An enzyme having such catalytic activity may therefore be referred to as an acyl (thio)ester hydrolase. An enzyme having such catalytic activity toward the acyl-CoA thioester may therefore be referred to as an acyl-CoA hydrolase. Preferably, the said acyl-CoA hydrolase is selective towards the substrate adipyl-CoA.

[0110] An enzyme capable of catalysing the hydrolysing an acyl (thio)ester may in particular be selected from the group of hydrolases (EC 3.1.2), preferably from the group of acyl-CoA hydrolase (EC 3.1.2.20), acetyl-CoA hydrolase (EC 3.1.2.1), long-chain fatty-acyl-CoA hydrolase (EC 3.1.2.2), succinyl-CoA hydrolase (EC 3.1.2.3) and acyl-[acyl-carrier-protein]-hydrolase (EC 3.1.2.14).

[0111] The biocatalyst may comprise an enzyme originating from any organism, including archaea, bacteria or eukaryotes.

[0112] In particular, the biocatalyst may comprise an enzyme of a bacterium selected from the group of E. coli, Brucella, (in particular Brucella melitensis), Agrobacterium (in particular A. tumefaciens), Xanthomonas, Sinorhizobium (in particular Sinorhizobium meliloti), Mesorhizobium (in particular Mesorhizobium loti), Vibrio, Streptomyces (in particular S. coelicolor and S. avermitilis), Rhodopseudomonas (in particular Rhodopseudomonas palustris), Xylella, Yersinia, Pseudomonas (in particular P. putida and P. aeruginosa), Shewanella, Shigella, Salmonella, Corynebacterium, Mycobacterium, Hyphomonas (in particular Hyphomonas neptunium) and Propionibacterium.

[0113] A suitable biocatalyst may in particular be found in a yeast selected from the group of Saccharomyces (in particular Saccharomyces cerevisiae) and Kluyveromyces (in particular K. lactis).

[0114] A suitable biocatalyst may in particular be found in a fungus selected from the group of Aspergillus (in particular A. niger, A. fumigatus and A. nidulans) and Penicillium (in particular P. chrysogenum).

[0115] In a further embodiment, the organism is selected from the group of Arabidopsis (in particular A. thaliana), Muridae (in particular Rattus norvegicus, Mus musculus), Bovidae (in particular Bos taurus, Ovis aries), Homo sapiens, and Caenorhabditis (in particular Caenorhabditis elegans).

[0116] In an embodiment of the invention a biocatalysts not per se having the desired activity or substrate specificity may be modified by methods known in the art, e.g. by rational design or molecular evolution, to create mutants able to efficiently convert an adipate ester or thioester to adipate. A biocatalyst having initial activity with a acyl-CoA derivative of a C4-C8 acid, preferably including dicarboxylic acids, are preferred. For instance a mutant may be created based on an acyl-CoA-thioesterase from Mus musculus (e.g. as given in Seq ID 73).

[0117] In a specific embodiment of the invention, the preparation comprises a biocatalytic reaction in the presence of a biocatalyst capable of catalysing the transfer of an activating group, in particular an ester or thio-ester, most particular CoA.

[0118] An enzyme having such catalytic activity may therefore be referred to as a CoA transferase. Preferably, the said CoA transferase is selective towards a dicarboxylic-CoA as CoA-donating substrate. More preferably, the said dicarboxylic-CoA is adipyl-CoA. Preferably, the said CoA transferase is selective towards or acetate as the CoA-accepting substrate.

[0119] An enzyme capable of catalysing the transfer of a CoA group may in particular be selected from the group of CoA transferases (EC 2.8.3), preferably from the group of dicarboxylic acid-CoA:dicarboxylic acid CoA transferase, adipate:succinyl-CoA CoA transferase, 3-oxoacid CoA-transferase (EC 2.8.3.5), 3-oxoadipate CoA-transferase (EC 2.8.3.6) and acetate CoA-transferase (EC 2.8.3.8).

[0120] A CoA transferase may in principle be obtained or derived from any organism. The organism may be bacteria, archaea or eukaryotes. In particular, organisms that are able to degrade dicarboxylic acids, in particular adipic acid, are preferred.

[0121] The organism may in particular be a bacterium selected from the group of Acinetobacter (in particular Acinetobacter strain ADP1, A. calcoaceticus), Clostridium (in particular C. kluyveri, C. acetobutylicum or C. beijerinckii), Pseudomonas (in particular P. putida and P. fluorescens), Agrobacterium, Alcaligenes, Athrobacter, Azomonas, Azospirillum, Azotobacter, Bacillus, Beijerinckia, Bradyrhizobium, Burkholderia, Comamonas, Corynebacterium, Norcadia, Rhizobium, Rhodotorula, Rodococcus, Trichosporon, and Roseburia sp.

[0122] The organism may in particular be a yeast or fungus selected from the group of Aspergillus (in particular A. niger), Penicillium (in particular P. chrysogenum), and Neurospora.

[0123] In particular, a suitable CoA transferase may be obtained or derived from a species from the family of Hominidea, more in particular from Homo sapiens.

[0124] A suitable enzyme for reaction 7 may in particular comprise an amino acid sequence according to any of the SEQUENCE ID's 68-73, 85, 116, 117, 119-124 or a homologue thereof.

[0125] The preparation of adipic acid from a thioester may in particular be catalysed by a biocatalyst comprising an acyl-CoA hydrolase comprising an amino acid sequence according to any of the SEQUENCE ID's 68-73, 117, 119 or a homologue thereof.

[0126] The preparation of adipic acid from a thioester may in particular be catalysed by a biocatalyst comprising a CoA transferase comprising an amino acid sequence according to any of the SEQUENCE ID's 85, 121, 122, 123, 124, 125, 126 or a homologue thereof.

[0127] The CoA-transferase can be encoded by a single gene or by more than one gene. For instance, some CoA-transferases comprise two subunits encoded by two different genes. These are generally used together to make the CoA transferase protein active. E.g. the following combinations could be used: Sequence ID 121 with Sequence ID 122, or Sequence ID 125 with Sequence ID 126.

[0128] The Preparation of 5-FVA from an Adipate Ester or an Adipate Thioester (`Reaction 5`)

[0129] In an embodiment, 5-formylpentanoate (5-FVA) is prepared from an adipate ester or an adipiate thioester. This may be done chemically, or biocatalytically. The adipate may in particular be coupled to CoA or another activating group, as indicated above.

[0130] In particular, the present invention also provides a method for preparing 5-FVA from an adipate ester or an adipate thioester, in particular a method for preparing 5-FVA from adipyl-CoA thioester, in the presence of a biocatalyst capable of catalysing the reduction of an acyl ester or thioester to an aldehyde.

[0131] An enzyme having such catalytic activity may therefore be referred to as an aldehyde dehydrogenase. An enzyme having such catalytic activity toward an acyl ester or acyl thioester--for instance acyl-CoA thioester--may therefore be referred to as an aldehyde dehydrogenase (acetylating). Preferably, the biocatalyst--comprising an aldehyde dehydrogenase (acetylating)--is selective towards the substrate adipate-ester or thioester.

[0132] An enzyme capable of catalysing the reduction of an acyl (thio)ester may in particular be selected from the group of oxidoreductases (EC 1.2.1), preferably from the group of aldehyde dehydrogenases (acetylating) (EC 1.2.1.10), fatty acyl-CoA reductases (EC 1.2.1.42), long-chain-fatty-acyl-CoA reductases (EC 1.2.1.50), butanal dehydrogenases (EC 1.2.1.57) and succinate semialdehyde dehydrogenases (acetylating) (see e.g. Sohling et al. 1996. J. Bacteriol. 178: 871-880)

[0133] An aldehyde dehydrogenase may in principle be obtained or derived from any organism. It is understood that the enzyme can also be obtained from metagenomic sources by direct isolation of the encoding nucleic acid and subsequent determination of activity in a heterologous host or by sequence homology found in the metagenomic DNA. The organism may be bacteria, archaea or eukaryotes. In particular the organism can be selected from bacteria, more in particular amongst the group of E. coli, Clostridium (in particular C. kluyveri, C. beijerinckii, C. acetobutylicum, C. botylicum, C. tetani, C. perfringens and C. novyi), Porphyromonas gingivalis, Listeria, Propionibacterium (in particular P. freudenreichii), Enterococcus, Fusobacterium, Lactobacillus (in particular L. lactis), Bacillus (in particular B. thuringiensis), Burkholderia (in particular B. thailandensis and B. mallei), Pseudomonas (in particular P. putida), Rhodococcus (in particular R. sp. RHA1) and Salmonella (in particular S. typhimurium). The organism can also be selected from eukaryotes, more in particular amongst the group of Giardia (in particular G. lamblia), Entamoeba (in particular E. Histolytica), Mastigamoeba balamuthi, Chlamydomonas reinhardtii, Polytomella, Piromyces, Cryptosporidium, and Spironucleus barkhanus.

[0134] A suitable dehydrogenase, may in particular comprise an amino acid sequence according to any of the SEQUENCE ID's 74-81, 139-148, or a homologue thereof.

[0135] In an embodiment of the invention a biocatalyst not per se having the desired activity or substrate specificity may be modified by methods known in the art, e.g. by rational design or molecular evolution, to create mutants able to convert adipate ester or thioester to 5-FVA. Biocatalysts having acylating aldehyde dehydrogenase activity with acyl-CoA derivatives with a chain length of 4-8, including but not limited to biocatalysts such as succinate semialdehyde dehydrogenase (acetylating) from C. kluyveri (Sequence ID 74) or P, gingivialis (Sequence ID 75) and butylaldehyde dehydrogenase (acetylating) from C. acetobutylicum (Sequence ID 80, 81) or Propionibacterium freudenreichii (Sequence ID 79) are preferred.

[0136] The Preparation of 5-FVA from Adipic Acid (`Reaction 8`)

[0137] In accordance with the invention adipic acid may be used to prepare 5-FVA, by reduction of one of the carboxylic acid groups. This may be accomplished chemically, e.g. by selective chemical reduction optionally including protection of one carboxylic acid group or biocatalytically. In a preferred method of the invention, the preparation comprises a biocatalytic reaction in the presence of a biocatalyst capable of catalysing the reduction a carboxylic acid. The biocatalyst may use NADH or NADPH as electron donor.

[0138] An enzyme having such catalytic activity may therefore be referred to as an aldehyde dehydrogenase. Preferably, the said aldehyde dehydrogenase is selective towards the substrate adipate.

[0139] An enzyme capable of catalysing the reduction of a carboxylic acid may in particular be selected from the group of oxidoreductases (EC 1.2.1), preferably from the group of aldehyde dehydrogenase (EC 1.2.1.3, EC 1.2.1.4 and EC 1.2.1.5), malonate-semialdehyde dehydrogenase (EC 1.2.1.15), succinate-semialdehyde dehydrogenase (EC 1.2.1.16 and EC 1.2.1.24); glutarate-semialdehyde dehydrogenase (EC 1.2.1.20), aminoadipate semialdehyde dehydrogenase (EC 1.2.1.31), adipate semialdehyde dehydrogenase (EC 1.2.1.63), which may also be referred to as 6-oxohexanoate dehydrogenase. Adipate semialdehyde dehydrogenase activity has been described, for example, in the caprolactam degradation pathway in the KEGG database. In particular a 6-oxohexanoate dehydrogenase may be used. Examples of 6-oxohexanoate dehydrogenases are enzymes comprising a sequence as represented by SEQUENCE ID 127, 128 or a homologue thereof.

[0140] An aldehyde dehydrogenase may in principle be obtained or derived from any organism. The organism may be prokaryotic or eukaryotic. In particular the organism can be selected from bacteria, archaea, yeasts, fungi, protists, plants and animals (including human).

[0141] In an embodiment the bacterium is selected from the group of Acinetobacter (in particular Acinetobacter sp. NCIMB9871), Ralstonia, Bordetella, Burkholderia, Methylobacterium, Xanthobacter, Sinorhizobium, Rhizobium, Nitrobacter, Brucella (in particular B. melitensis), Pseudomonas, Agrobacterium (in particular Agrobacterium tumefaciens), Bacillus, Listeria, Alcaligenes, Corynebacterium, and Flavobacterium.

[0142] In an embodiment the organism is selected from the group of yeasts and fungi, in particular from the group of Aspergillus (in particular A. niger and A. nidulans) and Penicillium (in particular P. chrysogenum)

[0143] In an embodiment, the organism is a plant, in particular Arabidopsis, more in particular A. thaliana.

[0144] The Preparation of 6-ACA (`Reaction 6`)

[0145] In an embodiment of the invention, 5-FVA is used to prepare 6-ACA.

[0146] In an embodiment, 6-ACA is obtained by hydrogenation over PtO.sub.2 of 6-oximocaproic acid, prepared by reaction of 5-FVA and hydroxylamine. (see e.g. F. O. Ayorinde, E. Y. Nana, P. D. Nicely, A. S. Woods, E. O. Price, C. P. Nwaonicha J. Am. Oil Chem. Soc. 1997, 74, 531-538 for synthesis of the homologous 12-aminododecanoic acid).

[0147] 6-ACA can be prepared in high yield by reductive amination of 5-FVA with ammonia over a hydrogenation catalyst, for example Ni on SiO2/Al2O3 support, as described for 9-aminononanoic acid (9-aminopelargonic acid) and 12-aminododecanoic acid (12-aminoolauric acid) in EP-A 628 535 or DE 4 322 065.

[0148] In a further embodiment 6-ACA is biocatalytically prepared. In a preferred method, the preparation of 6-ACA from 5-FVA comprises an enzymatic reaction in the presence of an enzyme capable of catalysing a transamination reaction in the presence of an amino donor, selected from the group of aminotransferases (EC. 2.6.1).

[0149] In general, a suitable aminotransferase has 6-ACA 6-aminotransferase activity, capable of catalysing the conversion of 5-FVA into 6-ACA.

[0150] The aminotransferase may in particular be selected amongst aminotransferases from a mammal; Mercurialis, in particular Mercurialis perennis, more in particular shoots of Mercurialis perennis; Asplenium, more in particular Asplenium unilaterale or Asplenium septentrionale; Ceratonia, more in particular Ceratonia siliqua; Rhodobacter, in particular Rhodobacter sphaeroides, Staphylococcus, in particular Staphylococcus aureus; Vibrio, in particular Vibrio fluvialis; Pseudomonas, in particular Pseudomonas aeruginosa; Rhodopseusomonas; Bacillus, in particular Bacillus weihenstephanensis and Bacillus subtilis; Legionella; Nitrosomas; Neisseria; or yeast, in particular Saccharomyces cerevisiae.

[0151] In case the enzyme is of a mammal, it may in particular originate from mammalian kidney, from mammalian liver, from mammalian heart or from mammalian brain. For instance a suitable enzyme may be selected amongst the group of .beta.-aminoisobutyrate:.alpha.-ketoglutarate aminotransferase from mammalian kidney, in particular .beta.-aminoisobutyrate:.alpha.-ketoglutarate aminotransferase from hog kidney; .beta.-alanine aminotransferase from mammalian liver, in particular .beta.-alanine aminotransferase from rabbit liver; aspartate aminotransferase from mammalian heart; in particular aspartate aminotransferase from pig heart; 4-amino-butyrate aminotransferase from mammalian liver, in particular 4-amino-butyrate aminotransferase from pig liver; 4-amino-butyrate aminotransferase from mammalian brain, in particular 4-aminobutyrate aminotransferase from human, pig, or rat brain; .alpha.-ketoadipate-glutamate aminotransferase from Neurospora, in particular .alpha.-ketoadipate:glutamate aminotransferase from Neurospora crassa; 4-amino-butyrate aminotransferase from E. coli, or .alpha.-aminoadipate aminotransferase from Thermus, in particular .alpha.-aminoadipate aminotransferase from Thermus thermophilus, and 5-aminovalerate aminotransferase from Clostridium in particular from Clostridium aminovalericum. A suitable 2-aminoadipate aminotransferase may e.g. be provided by Pyrobaculum islandicum.

[0152] In a specific embodiment, an aminotransferase is used comprising an amino acid sequence according to Sequence ID 82, Sequence ID 83, Sequence ID 84, Sequence ID 134, Sequence ID 136, Sequence 138, or a homologue of any of these sequences. Sequence ID's 86 (wild-type) and 88 (codon optimised) represent sequence encoding an enzyme represented by Sequence ID 82 (=87). Sequence ID's 89 (wild-type) and 91 (codon optimised) represent sequence encoding an enzyme represented by Sequence ID 83 (=90). Sequence ID 133, Sequence ID 135, Sequence 137 represent encoding sequences for Sequence ID 134, Sequence ID 136, Sequence 138, respectively.

[0153] In particular, the amino donor can be selected from the group of ammonia, ammonium ions, amines and amino acids. Suitable amines are primary amines and secondary amines. The amino acid may have a D- or L-configuration. Examples of amino donors are alanine, glutamate, isopropylamine, 2-aminobutane, 2-aminoheptane, phenylmethanamine, 1-phenyl-1-aminoethane, glutamine, tyrosine, phenylalanine, aspartate, .beta.-aminoisobutyrate, .beta.-alanine, 4-aminobutyrate, and .alpha.-aminoadipate.

[0154] In a further preferred embodiment, the method for preparing 6-ACA comprises a biocatalytic reaction in the presence of an enzyme capable of catalysing a reductive amination reaction in the presence of an ammonia source, selected from the group of oxidoreductases acting on the CH--NH.sub.2 group of donors (EC 1.4), in particular from the group of amino acid dehydrogenases (E.C. 1.4.1). In general, a suitable amino acid dehydrogenase has 6-aminocaproic acid 6-dehydrogenase activity, catalysing the conversion of 5-FVA into 6-ACA or has .alpha.-aminopimelate 2-dehydrogenase activity, catalysing the conversion of AKP into AAP. In particular a suitable amino acid dehydrogenase be selected amongst the group of diaminopimelate dehydrogenases (EC 1.4.1.16), lysine 6-dehydrogenases (EC 1.4.1.18), glutamate dehydrogenases (EC 1.4.1.3; EC 1.4.1.4), and leucine dehydrogenases (EC 1.4.1.9).

[0155] In an embodiment, an amino acid dehydrogenase may be selected amongst an amino acid dehydrogenases classified as glutamate dehydrogenases acting with NAD or NADP as acceptor (EC 1.4.1.3), glutamate dehydrogenases acting with NADP as acceptor (EC 1.4.1.4), leucine dehydrogenases (EC 1.4.1.9), diaminopimelate dehydrogenases (EC 1.4.1.16), and lysine 6-dehydrogenases (EC 1.4.1.18).

[0156] An amino acid dehydrogenase may in particular originate from an organism selected from the group of Corynebacterium, in particular Corynebacterium glutamicum; Proteus, in particular Proteus vulgaris; Agrobacterium, in particular Agrobacterium tumefaciens; Geobacillus, in particular Geobacillus stearothermophilus; Acinetobacter, in particular Acinetobacter sp. ADP1; Ralstonia, in particular Ralstonia solanacearum; Salmonella, in particular Salmonella typhimurium; Saccharomyces, in particular Saccharomyces cerevisiae; Brevibacterium, in particular Brevibacterium flavum; and Bacillus, in particular Bacillus sphaericus, Bacillus cereus or Bacillus subtilis. For instance a suitable amino acid dehydrogenase may be selected amongst diaminopimelate dehydrogenases from Bacillus, in particular Bacillus sphaericus; diaminopimelate dehydrogenases from Brevibacterium sp.; diaminopimelate dehydrogenases from Corynebacterium, in particular diaminopimelate dehydrogenases from Corynebacterium glutamicum; diaminopimelate dehydrogenases from Proteus, in particular diaminopimelate dehydrogenase from Proteus vulgaris; lysine 6-dehydrogenases from Agrobacterium, in particular Agrobacterium tumefaciens, lysine 6-dehydrogenases from Geobacillus, in particular from Geobacillus stearothermophilus; glutamate dehydrogenases acting with NADH or NADPH as cofactor (EC 1.4.1.3) from Acinetobacter, in particular glutamate dehydrogenases from Acinetobacter sp. ADP1; glutamate dehydrogenases (EC 1.4.1.3) from Ralstonia, in particular glutamate dehydrogenases from Ralstonia solanacearum; glutamate dehydrogenases acting with NADPH as cofactor (EC 1.4.1.4) from Salmonella, in particular glutamate dehydrogenases from Salmonella typhimurium; glutamate dehydrogenases (EC 1.4.1.4) from Saccharomyces, in particular glutamate dehydrogenases from Saccharomyces cerevisiae; glutamate dehydrogenases (EC 1.4.1.4) from Brevibacterium, in particular glutamate dehydrogenases from Brevibacterium flavum; and leucine dehydrogenases from Bacillus, in particular leucine dehydrogenases from Bacillus cereus or Bacillus subtilis.

[0157] In an embodiment, 6-ACA prepared in a method of the invention is used for preparing caprolactam. Such method comprises cyclising the 6 aminocaproic acid, optionally in the presence of a biocatalyst.

[0158] Reaction conditions for any biocatalytic step in the context of the present invention may be chosen depending upon known conditions for the biocatalyst, in particular the enzyme, the information disclosed herein and optionally some routine experimentation.

[0159] In principle, the pH of the reaction medium used may be chosen within wide limits, as long as the biocatalyst is active under the pH conditions. Alkaline, neutral or acidic conditions may be used, depending on the biocatalyst and other factors. In case the method includes the use of a micro-organism, e.g. for expressing an enzyme catalysing a method of the invention, the pH is selected such that the micro-organism is capable of performing its intended function or functions. The pH may in particular be chosen within the range of four pH units below neutral pH and two pH units above neutral pH, i.e. between pH 3 and pH 9 in case of an essentially aqueous system at 25.degree. C. A system is considered aqueous if water is the only solvent or the predominant solvent (>50 wt. %, in particular >90 wt. %)/0, based on total liquids), wherein e.g. a minor amount (<50 wt. %, in particular <10 wt. %, based on total liquids) of alcohol or another solvent may be dissolved (e.g. as a carbon source) in such a concentration that micro-organisms which may be present remain active. In particular in case a yeast and/or a fungus is used, acidic conditions may be preferred, in particular the pH may be in the range of pH 3 to pH 8, based on an essentially aqueous system at 25.degree. C. If desired, the pH may be adjusted using an acid and/or a base or buffered with a suitable combination of an acid and a base.

[0160] In principle, the incubation conditions can be chosen within wide limits as long as the biocatalyst shows sufficient activity and/or growth. This includes aerobic, micro-aerobic, oxygen limited and anaerobic conditions.

[0161] Anaerobic conditions are herein defined as conditions without any oxygen or in which substantially no oxygen is consumed by the biocatalyst, in particular a micro-organism, and usually corresponds to an oxygen consumption of less than 5 mmol/l.h, in particular to an oxygen consumption of less than 2.5 mmol/l.h, or less than 1 mmol/l.h.

[0162] Aerobic conditions are conditions in which a sufficient level of oxygen for unrestricted growth is dissolved in the medium, able to support a rate of oxygen consumption of at least 10 mmol/l.h, more preferably more than 20 mmol/l.h, even more preferably more than 50 mmol/l.h, and most preferably more than 100 mmol/l.h.

[0163] Oxygen-limited conditions are defined as conditions in which the oxygen consumption is limited by the oxygen transfer from the gas to the liquid. The lower limit for oxygen-limited conditions is determined by the upper limit for anaerobic conditions, i.e. usually at least 1 mmol/l.h, and in particular at least 2.5 mmol/l.h, or at least 5 mmol/l.h. The upper limit for oxygen-limited conditions is determined by the lower limit for aerobic conditions, i.e. less than 100 mmol/l.h, less than 50 mmol/l.h, less than 20 mmol/l.h, or less than to 10 mmol/l.h.

[0164] Whether conditions are aerobic, anaerobic or oxygen limited is dependent on the conditions under which the method is carried out, in particular by the amount and composition of ingoing gas flow, the actual mixing/mass transfer properties of the equipment used, the type of micro-organism used and the micro-organism density.

[0165] In principle, the temperature used is not critical, as long as the biocatalyst, in particular the enzyme, shows substantial activity. Generally, the temperature may be at least 0.degree. C., in particular at least 15.degree. C., more in particular at least 20.degree. C. A desired maximum temperature depends upon the biocatalyst. In general such maximum temperature is known in the art, e.g. indicated in a product data sheet in case of a commercially available biocatalyst, or can be determined routinely based on common general knowledge and the information disclosed herein.

[0166] The temperature is usually 90.degree. C. or less, preferably 70.degree. C. or less, in particular 50.degree. C. or less, more in particular or 40.degree. C. or less.

[0167] Further, solvents, additional reagents and further aids, e.g. cofactors (for instance FAD/FADH and/or NAD/NADH cofactor) may be chosen based on known reaction principles, to accomplish or accelerate a specific reaction and/or measures may be taken to shift the equilibrium to the desired side. In particular if a biocatalytic reaction is performed outside a host organism, a reaction medium comprising an organic solvent may be used in a high concentration (e.g. more than 50%, or more than 90 wt. %), in case an enzyme is used that retains sufficient activity in such a medium.

[0168] Succinate (ester or thioester) and acetate (ester or thioester) used in a method of the invention may in principle be obtained in any way.

[0169] Succinate is, e.g. naturally formed as an intermediate of the citric acid cycle (Krebs cycle) or an end product in cellular metabolism. Thus, it may be obtained from a renewable carbon source by using a suitable biocatalyst. Biocatalysts, in particular microorganisms, can be used for producing succinate from a suitable carbon source. The microorganism can be a prokaryote or a eukaryote. The microorganism may be recombinant or wild type.

[0170] In a recombinant microorganism, the metabolism may be altered to increase the yield and productivity of succinate on a suitable carbon source. Methods for increasing succinate production have been described for prokaryotes in Song and Lee, Enzyme and Microbial Technology, 2006, 39: 352-361. Succinate may also be produced in a eukaryote. In addition and alternatively, adaptive evolutionary can be applied, such as described in US application 2007/111294.

[0171] Succinate ester or thioester can be obtained from succinate in any way. In particular, succinate ester or thioester can be obtained from succinate by using a biocatalyst. In particular, succinyl-CoA can be obtained from succinate by using a biocatalyst comprising an enzyme selected from the group of acid thiol ligase (EC 6.2.1), preferably from the group of succinyl-CoA synthase (EC 6.2.1.4 and EC 6.2.1.5). In addition or alternatively, succinyl-CoA can be obtained from succinate by using a biocatalyst comprising an enzyme selected from the group of CoA transferases (EC 2.8.3) as specified for reaction 7.

[0172] Succinate ester or thioester can also be obtained from molecules other than succinate in any way. In particular, succinyl-CoA can be obtained from 2-oxoglutarate using a biocatalyst comprising a 2-oxoglutarate dehydrogenase complex. 2-Oxoglutarate dehydrogenase complex is a multi-enzyme complex participating in the TCA cycle, known to person skilled in the art. In addition or alternatively, succinyl-CoA can be obtained from 2-oxoglutarate using a biocatalyst comprising a 2-oxoglutarate: ferredoxin oxidoreductase (EC 1.2.7.3).

[0173] Acetate is a natural intermediate or end product in cellular metabolism. Thus, it may be obtained from a renewable carbon source by using a suitable biocatalyst. Biocatalysts, in particular microorganisms, can be used for producing succinate from a suitable carbon source. The microorganism can be a prokaryote or a eukaryote. The microorganism may be recombinant or wild type.

[0174] Acetate ester or thioester can be obtained from acetate in any way. In particular, acetyl-CoA can be obtained from acetate by using a biocatalyst comprising an enzyme selected from the group of acid thiol ligase (EC 6.2.1), preferably acetyl-CoA synthase (EC 6.2.1.1 and EC 6.2.1.13). In addition or alternatively, acetyl-CoA can be obtained from acetate using a biocatalyst comprising of an enzyme selected from the group of CoA transferases (EC 2.8.3) as specified for reaction 7.

[0175] Acetate ester or thioester can also be obtained from molecules other than acetate in any way. In particular, acetyl-CoA can be obtained from pyruvate using a biocatalyst comprising an enzyme selected from the group of pyruvate dehydrogenase complex, pyruvate dehydrogenase (NADP+) (EC 1.2.1.51), pyruvate formate lyase (EC 2.3.1.54) or a biocatalyst or enzyme effectively converting pyruvate to acetyl-CoA. Pyruvate dehydrogenase complex is a multi-enzyme complex converting pyruvate into acetyl-CoA, known to person skilled in the art.

[0176] Acetyl-CoA can also be obtained from acetaldehyde using a biocatalyst comprising an enzyme selected from the group of oxidoreductases (EC 1.2.1), preferably from the group of aldehyde dehydrogenases (acetylating) (EC 1.2.1.10), fatty acyl-CoA reductases (EC 1.2.1.42), butanal dehydrogenases (EC 1.2.1.57) and succinate semialdehyde dehydrogenases (acetylating) (as described in Sohling et al. 1996. J. Bacteriol. 178: 871-880).

[0177] When the biocatalyst is a eukaryote, the supply of acetyl-CoA, preferably in the cytosolic compartment in the host cell, may be increased by overexpressing homologous and/or heterologous genes encoding enzymes that catalyze the conversion of a precursor molecule to acetyl-CoA. The precursor molecule may for example be acetate, as described by Shiba et al., Metabolic Engineering, 2007, 9: 160-8.

[0178] In an advantageous method of the invention, in particular a method for preparing 6-ACA, adipic acid or an intermediate compound for 6-ACA or adipic acid, use is made of a whole cell biotransformation of the substrate for 6-ACA, adipic acid or an intermediate thereof, comprising the use of a micro-organism wherein one or more enzymes catalysing any of the above reactions are produced, and a carbon source for the micro-organism.

[0179] The carbon source may in particular contain at least one compound selected from the group of monohydric alcohols, polyhydric alcohols, carboxylic acids, carbon dioxide, fatty acids, glycerides, including mixtures comprising any of said compounds. Suitable monohydric alcohols include methanol and ethanol, Suitable polyols include glycerol and carbohydrates. Suitable fatty acids or glycerides may in particular be provided in the form of an edible oil, preferably of plant origin.

[0180] In particular a carbohydrate may be used, because usually carbohydrates can be obtained in large amounts from a biologically renewable source, such as an agricultural product, for instance an agricultural waste-material. Preferably a carbohydrate is used selected from the group of glucose, fructose, sucrose, lactose, saccharose, starch, cellulose and hemi-cellulose. Particularly preferred are glucose, oligosaccharides comprising glucose and polysaccharides comprising glucose.

[0181] In a specific method of the invention, the method is a fermentation method. Such method may in particular, comprise contacting cells comprising a biocatalyst--optionally a host cell as described herein--with a fermentable carbon source, wherein the carbon source contains any of said compounds which are to be converted into the compound to be prepared or wherein the cells prepare the compound to be converted into the compound to be prepared from the carbon source.

[0182] A cell comprising one or more enzymes for catalysing a reaction step in a method of the invention can be constructed using molecular biological techniques, which are known in the art per se. For instance, if one or more biocatalysts are to be produced in a heterologous system, such techniques can be used to provide a vector which comprises one or more genes encoding one or more of said biocatalysts. A vector comprising one or more of such genes can comprise one or more regulatory elements, e.g. one or more promoters, which may be operably linked to a gene encoding an biocatalyst.

[0183] As used herein, the term "operably linked" refers to a linkage of polynucleotide elements (or coding sequences or nucleic acid sequence) in a functional relationship. A nucleic acid sequence is "operably linked" when it is placed into a functional relationship with another nucleic acid sequence. For instance, a promoter or enhancer is operably linked to a coding sequence if it affects the transcription of the coding sequence.

[0184] As used herein, the term "promoter" refers to a nucleic acid fragment that functions to control the transcription of one or more genes, located upstream with respect to the direction of transcription of the transcription initiation site of the gene, and is structurally identified by the presence of a binding site for DNA-dependent RNA polymerase, transcription initiation sites and any other DNA sequences, including, but not limited to transcription factor binding sites, repressor and activator protein binding sites, and any other sequences of nucleotides known to one of skilled in the art to act directly or indirectly to regulate the amount of transcription from the promoter. A "constitutive" promoter is a promoter that is active under most environmental and developmental conditions. An "inducible" promoter is a promoter that is active under environmental or developmental regulation. The term "homologous" when used to indicate the relation between a given (recombinant) nucleic acid or polypeptide molecule and a given host organism or host cell, is understood to mean that in nature the nucleic acid or polypeptide molecule is produced by a host cell or organisms of the same species, preferably of the same variety or strain.

[0185] The promoter that could be used to achieve the expression of the nucleotide sequences coding for an enzyme for use in a method of the invention such as described herein above may be native to the nucleotide sequence coding for the enzyme to be expressed, or may be heterologous to the nucleotide sequence (coding sequence) to which it is operably linked. Preferably, the promoter is homologous, i.e. endogenous to the host cell.

[0186] If a heterologous promoter (to the nucleotide sequence encoding for the enzyme of interest) is used, the heterologous promoter is preferably capable of producing a higher steady state level of the transcript comprising the coding sequence (or is capable of producing more transcript molecules, i.e. mRNA molecules, per unit of time) than is the promoter that is native to the coding sequence. Suitable promoters in this context include both constitutive and inducible natural promoters as well as engineered promoters, which are well known to the person skilled in the art.

[0187] A "strong constitutive promoter" is one which causes mRNAs to be initiated at high frequency compared to a native host cell. Examples of such strong constitutive promoters in Gram-positive micro-organisms include SP01-26, SP01-15, veg, pyc (pyruvate carboxylase promoter), and amyE.

[0188] Examples of inducible promoters in Gram-positive micro-organisms include, the IPTG inducible Pspac promoter, the xylose inducible PxylA promoter.

[0189] Examples of constitutive and inducible promoters in Gram-negative microorganisms include, tac, tet, trp-tet, lpp, lac, lpp-lac, laclq, T7, T5, T3, gal, trc, ara (P.sub.BAD), SP6, .lamda.-P.sub.R, and .lamda.-P.sub.L.

[0190] The term "heterologous" when used with respect to a nucleic acid (DNA or RNA) or protein refers to a nucleic acid or protein that does not occur naturally as part of the organism, cell, genome or DNA or RNA sequence in which it is present, or that is found in a cell or location or locations in the genome or DNA or RNA sequence that differ from that in which it is found in nature. Heterologous nucleic acids or proteins are not endogenous to the cell into which it is introduced, but has been obtained from another cell or synthetically or recombinantly produced. Generally, though not necessarily, such nucleic acids encode proteins that are not normally produced by the cell in which the DNA is transcribed or expressed. Similarly exogenous RNA encodes for proteins not normally expressed in the cell in which the exogenous RNA is present. Heterologous nucleic acids and proteins may also be referred to as foreign nucleic acids or proteins. Any nucleic acid or protein that one of skill in the art would recognize as heterologous or foreign to the cell in which it is expressed is herein encompassed by the term heterologous nucleic acid or protein.

[0191] A method according to the invention may be carried out using an organism, which may be a host organism, in particular a host micro-organism, or a wild-type micro-organism. Accordingly, the invention also relates to a novel (host) cell, which may be a microorganism, comprising a biocatalyst capable of catalysing at least one reaction step in a method of the invention, preferably the cell is capable of producing an enzyme or a plurality of enzymes, whereby two or more reaction steps in a method of the invention are catalysed. The invention also relates to a novel vector comprising one or more genes encoding for one or more enzymes capable of catalysing at least one reaction step in a method of the invention.

[0192] In an embodiment, a cell or a vector is provided comprising a nucleic acid sequence, which may be recombinant, encoding an enzyme with 5-carboxy-2-pentenoyl ester or thioester hydrogenase activity, in particular 5-carboxy-2-pentenoyl hydrogenase activity.

[0193] Preferably, the cell further comprises at least one (recombinant vector comprising a) nucleic acid sequence encoding an enzyme selected from the group of enzymes capable of catalysing the conversion of an adipyl ester or thioester, in particular adipyl-Coa, into 5-FVA and enzymes catalysing the conversion of adipyl ester or thioester, in particular adipyl-Coa, into adipic acid.

[0194] In particular in an embodiment wherein the cell comprises an enzyme capable of catalysing the conversion of an adipyl ester or thioester into 5-FVA, the cell may advantageously comprise (a recombinant vector comprising) a nucleic acid sequence encoding an enzyme capable of catalysing the conversion of 5-FVA into 6-ACA. Such enzyme may in particular be an enzyme with 5-FVA aminotransferase activity.

[0195] In addition or alternatively, the (host) cell respectively vector comprises at least one of the following nucleic acid sequences: [0196] a nucleic acid sequence encoding an enzyme capable of catalysing the formation of 3-oxoadipyl ester or thioester by reacting a succinyl ester or thioester with an acetate ester or thioester; [0197] a nucleic acid sequence encoding an enzyme capable of catalysing the formation of a 3-hydroxyadipyl ester or thioester from a 3-oxoadipyl ester or thioester; [0198] a nucleic acid sequence encoding an enzyme capable of catalysing the formation of a 5-carboxy-2-pentenoyl ester or thioester from a 3-hydroxyadipyl ester or thioester; [0199] a nucleic acid sequence encoding an enzyme capable of catalysing the formation of a an adipyl ester or thioester from 5-carboxy-2-pentenoyl ester or thioester.

[0200] One or more suitable genes may in particular be selected amongst genes encoding an enzyme as mentioned herein above, more in particular amongst genes encoding an enzyme according to any of the Sequence ID's 1-67, 94, 96, 98, 100, 102, 103, 105, 107, 109, 111, 113, 115, 116 or a homologue thereof.

[0201] The host cell may be a prokaryote or an eukaryote. In particular the host cell can be selected from bacteria, archaea, yeasts, fungi, protists, plants and animals (including human).

[0202] In particular a host cell according to the invention may be selected from the group of genera consisting of Aspergillus, Bacillus, Corynebacterium, Escherichia, Saccharomyces, Pseudomonas, Gluconobacter, Penicillium, Pichia. In particular a host strain and, thus, a host cell may be selected from the group of E. coli, Bacillus subtilis, Bacillus amyloliquefaciens, Corynebacterium glutamicum, Aspergillus niger, Penicillium chrysogenum, Pichia pastoris, Saccharomyces cerevisiae.

[0203] Host cells able to produce short chain fatty acids such as succinate and/or acetate and/or esters or thio-esters thereof may be advantageous. Organisms capable thereof are generally present in the rumen of ruminants. In particular an organism able of coproduction of succinate and acetate or esters or thioesters thereof is preferred.

[0204] The microorganism may be recombinant or wild type. In particular, microorganisms capable of producing succinate include E, coli, Actinobacillus (in particular A. succinogenes), Mannheimia (in particular M. succiniciproducens), Saccharomyces cerevisiae, Aspergillus (in particular A. niger), Penicillium (in particular P. chrysogenum and P. simplicissimum) and other organisms mentioned in Kaemwich Jantama, M. J. Haupt, Spyros A. Svoronos, Xueli Zhang, J. C. Moore, K. T. Shanmugam, L. O. Ingram. Biotechnology and Bioengineering (2007) 99, 5: 1140-1153.

[0205] In particular, microorganisms capable of producing acetate include Enterobacteriaceae (in particular E. coli, Salmonella, and Shigella), acetic acid bacteria (Includes Acetobacter (in particular Acetobacter aceti), Gluconobacter (in particular Gluconobacter oxidans), Acidomonas, Gluconacetobacter, Asaia, Kozakia, Swaminathania, Saccharibacter, Neoasaia, Granulibacter, Clostridium (in particular C. aceticum, C. thermoaceticum, C. thermoautotrophicum, C. formicoaceticum, C. kluyveri, C. propionicum), Megasphaera (in particular M. elsdenii), Acetobacterium (In particular A. woodii and A. wieringae), Lactobacillus (in particular L. plantarum, L. brevum), Bifidobacterium (In particular B. bifidum), and Leuconostoc.

[0206] The invention further relates to a novel polypeptide, respectively to a nucleotide sequence encoding such polypeptide. In particular, the invention further relates to a polypeptide comprising an amino acid sequence according to any of the Sequence ID's 57, 68-72, 79, 85 and homologues thereof. In particular, the invention further relates to a polynucleotide encoding a polypeptide comprising an amino acid sequence according to any of the Sequence ID's 57, 68-72, 79, 85 and homologues thereof.

[0207] Next, the invention is illustrated by the following examples.

EXAMPLES

Example 1

General Methods

[0208] Molecular and Qenetic Techniques

[0209] Standard genetic and molecular biology techniques are generally known in the art and have been previously described (Maniatis et al. 1982 "Molecular cloning: a laboratory manual". Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.; Miller 1972 "Experiments in molecular genetics", Cold Spring Harbor Laboratory, Cold Spring Harbor; Sambrook and Russell 2001 "Molecular cloning: a laboratory manual" (3rd edition), Cold Spring Harbor Laboratory, Cold Spring Harbor Laboratory Press; F. Ausubel et al, eds., "Current protocols in molecular biology", Green Publishing and Wiley Interscience, New York 1987).

[0210] Plasmids and Strains

[0211] pBAD/Myc-His C and pET21d were obtained from Invitrogen (Carlsbad, Calif., USA) and EMD Biosciences (Darmstadt, Germany) respectively. pF113 (a derivative of pJF119EH (Furste, J. P., W. Pansegrau, R. Frank, H. Blocker, P. Scholz, M. Bagdasarian, and E. Lanka. 1986. Molecular cloning of the plasmid RP4 primase region in a multi-host-range tacP expression vector. Gene 48:119-131.) which contains two Notl sites at positions 515 and 5176 respectively with the tac promoter being the start of the numbering), pACYC-tac (Kramer, M. (2000). Untersuchungen zum Einfluss erhohter Bereitstellung von Erythrose-4-Phosphat and Phosphoenolpyruvat auf den Kohlenstofffluss in den Aromatenbiosyntheseweg von Escherichia coli. Berichte des Forschungszentrums Julich, 3824. ISSN 0944-2952 (PhD Thesis, University of Dusseldorf) and pMS470 (Balzer, D.; Ziegelin, G.; Pansegrau, W.; Kruft, V.; Lanka, E. Nucleic Acids Research 1992, 20(8), 1851-1858.) have been described previously. E. coli TOP10 (Invitrogen, Carlsbad, Calif., USA) was used for all cloning procedures. E. coli strains Top10 (Invitrogen, Carlsbad, Calif., USA), Rv308 (ATCC31608), Rv308.DELTA.araB, and BL21 A1 (Invitrogen, Carlsbad, Calif., USA) were used for protein expression.

[0212] All vectors were adapted by inserting a common linker to allow an identical cloning strategy. The adaptation and general cloning scheme is shown in FIG. 2.

[0213] Media

[0214] 2.times.TY medium (16 g/l tryptopeptone, 10 g/l yeast extract, 5 g/l NaCl) was used for growth of E. coli. Antibiotics (100 .mu.g/ml ampicillin) were supplemented to maintain plasmids. For induction of gene expression arabinose (for pBAD derivatives), IPTG (for pMS470 and pF113 derivatives), and a combination of arabinose and IPTG (for pET21d derivatives in E. coli BL21-A1) were used at 0.005-0.2% (arabinose) and 0.1-0.5 mM (IPTG) final concentrations.

[0215] Identification of Plasmids

[0216] Plasmids carrying the different genes were identified by genetic, biochemical, and/or phenotypic means generally known in the art, such as resistance of transformants to antibiotics, PCR diagnostic analysis of transformant or purification of plasmid DNA, restriction analysis of the purified plasmid DNA or DNA sequence analysis.

[0217] HPLC-MS Analysis Method for the Determination of CoA-Derivatives

[0218] Adipyl-Coa and 6-carboxy-2,3-ene hexanoyl-CoA concentrations were determined by LC-MS. An Agilent SB-C18 2.1*50 mm column was used for separation with acetonitrile/water buffered with 750 mg/l octylammonium acetate (pH=7.5) as mobile phase. Flow was 300 .mu.l/min and elution was done with a gradient (Start: 70% water, decrease to 58% in 3 min, step to 45%, further decrease, to 20% in 1.5 min, followed by reequilibration of the column, in such a way that the total runtime was 7 min). A LTQ orbitrap was used in electrospray negative ionization mode, scanning from m/z 765-900. adipyl-Coa and 6-carboxy-2,3-ene hexanoyl-CoA eluted at 2.25 min and 2.5 min respectively. The selectivity of the method was enhanced by observing the accurate protonated molecules of the compounds requested (adipyl-Coa: 894.15123-894.16017, 6-carboxy-2,3-ene hexanoyl-CoA: 892.13437-892.14329). To determine concentrations a standard curve of synthetically prepared compounds was run to calculate a response factor for the respective ions. This was used to calculate the concentrations in unknown samples.

[0219] Adipate can be detected and quantified as described in Kippenberger, M.; Winterhalter, R.; Moortgat, G. K. Anal. Bioanal. Chem. 2008, 392(7-8), 1459-1470.

Example 2

6-carboxy-2,3-ene-hexanoyl-CoA Reductase Activity Determination

[0220] Expression Constructs

[0221] Putative 6-carboxy-2,3-ene-hexanoyl-CoA reductases were selected from databases (Table 1).

[0222] Target genes encoding the selected proteins were codon pair optimized (using methodology described in WO08000632) and constructed synthetically (Geneart, Regensburg, Germany). Before optimization, targeting sequences (e.g secretion signals or peroxisomal/mitochondrial targeting sequences) were removed from the amino acid sequence. Such targeting sequences can be identified by bioinformatics tools well known in the art, such as described in Emanuelsson et al. 2007. Nature protocols, 2: 953-971). In the optimization procedure internal restriction sites were avoided and common restriction sites were introduced at the start and stop to allow cloning according to the strategy shown in FIG. 2. These modifications may result in minor changes to the respective protein sequences which are contemplated to not alter the properties of the respective protein in any way. Each ORF was preceded by a consensus ribosomal binding site and leader sequence to drive translation in pF113, pMS470 and pET21d. In pBAD translation initiation signals are provided by the vector. The target genes `Adi4`, Adi5`, `Adi8` and `Adi 9` were cloned into all four plasmids both with and without read-through to the C-terminal His-tag provided by the linker sequence.

[0223] Protein Expression in E. Coli

[0224] Starter cultures were grown overnight in 96-well plates with 200 .mu.l medium/well. 40-160 .mu.l were transferred to fresh 24-deep-well plates with 4 ml media. For pBAD constructs in E. coli TOP10 or E. coli Rv308.DELTA.araB this medium directly contained 0.005% arabinose for inductions. Plates were incubated on an orbital shaker (Infors, 550 rpm) at 25.degree. C. After 4-6 h inducers were added (0.5 mM IPTG for pF113 and pMS470 in E. coli Rv308, E. coli BL21 or E. coli TOP10; 0.5 mM IPTG and 0.2% arabinose for pET21d in E. coli BL21A1) and plates were incubated for another 4-48 h until cells were collected by centrifugation.

[0225] Preparation of Cell Free Extract and His-Tag Purification

[0226] Cells from small scales growth (see previous paragraph) were harvested by centrifugation and the supernatant was discarded. The cell pellets formed during centrifugation were frozen at -20.degree. C. for at least 16 h and then thawed on ice. 2 ml of freshly prepared lysis buffer (50 mM potassium phosphate pH7.5, 0.1 mg/ml DNAse I (Roche, Almere, NL), 2 mg/ml Lysozyme, 0.5 mM MgSO.sub.4, 1 mM dithiothreitol, and protease inhibitors (Complete Mini EDTA-free Tablets.TM., Roche, Almere, NL, were used according to the manufacturers specification) were added to each well and cells were resuspended by vigorously vortexing the plate for 2-5 min. To achieve lysis, the plate was incubated at room temperature for 30 min. To remove cell debris, the plate was centrifuged at 4.degree. C. and 6000 g for 20 min. The supernatant was transferred to a fresh plate and kept on ice until further use. For purification of His-tagged proteins His Multitrap HP filter plates (GE Healthcare bioscience AB, Uppsala, Sweden) were used according to the manufacturer's instructions.

[0227] Synthesis of Substrates

[0228] Substrate (J. R. Stern, A. del Campillo, J. Biol. Chem., 1956, 985. A. K. Das, M. D. Uhler, A. K. Hajra, J. Biol. Chem., 2000, 24333. H. Oku, N. Futamori, K. Masuda, Y. Shimabukuro, T. Omine, H. Iwasaki, Biosc. Biotech. Biochem., 2003, 2107. Elvidge et. al, J. Chem. Soc., 1953, 1793. F. Liu, H-Y. Zha, Z-J. Yao, J. Org. Chem., 2003, 6679-6684) and product (WO2004/106347) of the desired biochemical reaction and were synthesized by Syncom (Groningen, NL) according to published procedures.

[0229] Enzymatic Enoyl-CoA Assay

[0230] A reaction mixture was prepared comprising 50 mM potassium buffer (pH7.5), 0.7 mM NADH and NADPH each, and approximately 20 .mu.M of the substrate 6-carboxylic 2,3-ene hexanoyl-CoA. 190 .mu.l of the reaction mixture were dispensed into each well of 96-wellplates. The same way 10 .mu.l of cell free extract prepared from the respective strain carrying the empty vector was used in control reactions. To start the reaction, 10 .mu.l of the cell free extracts or purified protein were added, to each of the wells. Reaction mixtures were incubated at room temperature (20-25 C) for 15 min to 24 h with online monitoring of UV absorption at 340 nm. At the end reactions were stopped by adding an equal volume of MeOH and samples were centrifuged. Supernatant was transferred to a fresh plate and stored at -80 C until further analysis by HPLC-MS. adipyl-Coa was found as shown in Table 1.

TABLE-US-00001 TABLE 1 adipyl- CoA (amount is indicated by relative peak-area) found in the enzymatic assay. Biocatalyst SeqID # Modifications.sup.1 adipyl-CoA.sup.2 Adi4 63 N-terminus 134 AA 3266 removed Adi5 96 196031 Adi8 60 N-terminus 22 AA 581859 removed Adi9 100 N-terminus 12 AA 117077 removed -- (vector control) 0 .sup.1If the resulting polypeptide after modification does not start with a methionine at the N-terminus, the resulting polypeptide is further modified by adding a methionine at the N-terminus. .sup.2Results shown were obtained with E. coli BL21 containing the adi gene cloned in pMS470 after 20 h incubation. Positive results were also obtained with other expression vectors and host strains (such as pET21d in E. coli BL21-A1, pBAD/Myc-His C in E. coli Rv308 and pF113 in E. coli BL21) and different incubation periods (e.g. 2 h).

Example 3

Production of Adipate by a Heterologous Microorganism

[0231] Construction of an Adipate Biosynthetic Pathway

[0232] A synthetic pathway was designed consisting of the enzymatic activities shown in FIG. 3. Enzymes encoding these activities were identified in databases. Target genes encoding these enzymes were codon pair optimized and constructed synthetically (Geneart, Regensburg, Germany). In the optimization procedure internal restriction sites, undesired targeting sequences (e.g secretion signals or peroxisomal targeting sequences) were removed and restriction sites were introduced at the start and stop to allow assembly of the pathway in expression vectors according to FIG. 4. These modifications may result in minor changes to the protein sequence which are contemplated to not alter the properties of the respective protein in any way. Each ORF was preceded by a consensus ribosomal binding site and leader sequence to drive translation.

[0233] For reactions 1, 2, and 3 the combinations of adi21+22+23 or adi26+27+28 were used. For reaction 7 adi29, adi30 or a combination of adi24+25 were used. For reaction 4 adi1-20 can be used with adi8, adi6, adi13+12.

TABLE-US-00002 TABLE 2 SeqIDs of the different Adi proteins. Protein Seq ID # Adi21 5 Adi22 18 Adi23 33 Adi24 119 Adi25 120 Adi26 3 Adi27 29 Adi28 14 Adi29 116 Adi30 117

[0234] Construction of an Adipate Producing E. Coli Strain

[0235] To construct adipate producing E. coli strains plasmids encoding a complete adipate pathway were transformed into the appropriate host strains for expression of the cloned genes. pMS470 constructs containing full pathways, were transformed into E. coli BL21, TOP10 and Rv308. pBAD/Myc-His C constructs were transformed into E. coli TOP10 and Rv308.DELTA.araB. Constructs in pF113 or pACYC-tac were transformed together with compatible pF113, pACYC-tac or pMS470 constructs in a way that the final strain contained a complete adipate pathway. These plasmids were co-transformed to E. coli TOP10), BL21, and Rv308.

[0236] Production of Adipate

[0237] For production of adipate, starter cultures were grown over night in 96-well plates with 200 .mu.l medium at 30 C. 50 .mu.l were transferred to a fresh plate 24-well plate with 4 ml medium and grown for 4-6 h at 25 C and then inducers to induce expression of the adipate pathway were added. Cultures were incubated for another 12 h-72 h at 25 C. Plates were centrifuged and samples prepared for LC-MS analysis. Supernatant was mixed 1:1 with MeOH to precipitate proteins and then directly analyzed. Metabolites from cells were extracted by resuspending the pellet in 1 ml Ethanol. The cell suspension was transferred to a tube with a screw top and heated in a boiling water bath for 3 min. After centrifugation the supernatant was transferred to a fresh tube and evaporated in a speed-vac. Dry samples were resuspended in 100 .mu.l mobile phase prior to analysis.

Example 4

Preparation of 5-FVA from Adipyl-CoA

[0238] HPLC-MS Analysis Method for the Determination of 5-FVA

[0239] 5-FVA was detected by selective reaction monitoring (SRM)-MS, measuring the transition m/z 129.fwdarw.83. Concentrations for 5-FVA were calculated by measuring the peak area of the 5-FVA peak eluting at approximately 6 min. Calibration was performed by using an external standard procedure. All the LC-MS experiments were performed on an Agilent 1200 LC system, consisting of a quaternary pump, autosampler and column oven, coupled with an Agilent 6410 QQQ triple quadrupole MS.

LC Conditions:

[0240] Column: 50.times.4.6 mm Nucleosil C18, 5 .mu.m (Machery & Nagel) pre column coupled to a 250.times.4.6 mm id. Prevail C18, 5 .mu.m (Alltech) [0241] Column temperature: room temperature [0242] Eluent: A: water containing 0.1% formic acid B: acetonitrile containing 0.1% formic acid

TABLE-US-00003 [0242] Gradient: time (min) % eluent B 0 10 6 50 6.1 10 11 10

[0243] Flow: 1.2 ml/min, before entering the MS the flow is split 1:3 [0244] Injection volume: 2 .mu.l

MS Conditions:

[0244] [0245] Ionisation: negative ion electrospray source conditions: ionspray voltage: 5 kV temperature: 350.degree. C. fragmentor voltage and collision energy optimized

TABLE-US-00004 [0245] Scan mode: selective reaction mode: transition m/z 129 .fwdarw. 83

[0246] Expression Constructs

[0247] Putative adipyl-CoA-reductases were selected (SeqID 74, 75, 77, 79, 80, 139-148). Expression constructs are designed and prepared in the same way as described before in example 2 using pBAD/Myc-His C and pET21d.

[0248] Protein Expression, Extraction and Purification

[0249] All steps are carried out as described in example 2.

[0250] Enzymatic Adipyl-CoA Reductase Assay

[0251] A reaction mixture is prepared comprising 50 mM potassium buffer (pH7.5), 0.7 mM NADH and NADPH each, and 10 .mu.M-10 mM of the substrate adipyl-CoA. 190 .mu.l of the reaction mixture are dispensed into each well of 96-wellplates. Adipyl-CoA was prepared as described in example 2. To start the reaction, 10 .mu.l of the cell free extracts or purified protein are added to each of the wells. The same way 10 .mu.l of cell free extract prepared from the respective strain carrying the empty vector is used in control reactions. Reaction mixtures are incubated at room temperature (20-25 C) for 15 min-24 h with online monitoring of UV absorption at 340 nm. At the end reactions are stopped by adding an equal volume of MeOH and samples are centrifuged. Supernatant is transferred to a fresh plate and stored at -80 C until detection of 5-FVA by HPLC-MS. Measurement of 5-FVA demonstrates adipyl-CoA reductase activity of the selected enzymes.

Example 5

The Preparation of 6-ACA from 5-FVA

[0252] HPLC-MS analysis for the determination of 6-ACA

[0253] Calibration:

[0254] The calibration was performed by an external calibration line of 6-ACA (m/z 132.fwdarw.m/z 114, Rt 7.5 min). All the LC-MS experiments were performed on an Agilent 1100, equipped with a quaternary pump, degasser, autosampler, column oven, and a single-quadrupole MS (Agilent, Waldbronn, Germany). The LC-MS conditions were: [0255] Column: 50*4 Nucleosil (Mancherey-Nagel)+250.times.4.6 Prevail C18 (Alltech), both at room temperature (RT) [0256] Eluent: A=0.1(v/v) formic acid in ultrapure water B=Acetonitrile (pa, Merck) [0257] Flow: 1.0 ml/min, before entering the MS the flow was split 1:3 [0258] Gradient: The gradient was started at t=0 minutes with 100% (v/v) A, remaining for 15 minutes and changed within 15 minutes to 80% (v/v) B (t=30 minutes). From 30 to 31 minutes the gradient was kept at constant at 80% (v/v) B. [0259] Injection volume: 5 .mu.l [0260] MS detection: ESI(+)-MS The electrospray ionization (ESI) was run in the positive scan mode with the following conditions; m/z 50-500, 50 V fragmentor, 0.1 m/z step size, 350.degree. C. drying gas temperature, 10 L N.sub.2/min drying gas, 50 psig nebuliser pressure and 2.5 kV capillary voltage.

[0261] Cloning of Target Genes

[0262] Design of Expression Constructs

[0263] attB sites were added to all genes upstream of the ribosomal binding site and start codon and downstream of the stop codon to facilitate cloning using the Gateway technology (Invitrogen, Carlsbad, Calif., USA).

[0264] Gene Synthesis and Construction of Plasmids

[0265] Synthetic genes were obtained from DNA2.0 and codon optimised for expression in E. coli according to standard procedures of DNA2.0. The aminotransferase genes from Vibrio fluvialis JS17 [SEQ ID No. 86] and Bacillus weihenstephanensis KBAB4 [SEQ ID No. 89] encoding the amino acid sequences of the V. fluvialis JS17 .omega.-aminotransferase [SEQ ID No. 82] and the B. weihenstephanensis KBAB4 aminotransferase (ZP.sub.--01186960) [SEQ ID No. 83], respectively, were codon optimised and the resulting sequences [SEQ ID No. 88] and [SEQ ID No. 91] were obtained by DNA synthesis.

[0266] Cells provided with said genes are referred to herein below as E. coli TOP10/pBAD-Vfl_AT and E. coli TOP10/pBAD-Bwe_AT respectively

[0267] Cloning by PCR

[0268] Various genes encoding a biocatalyst were amplified from genomic DNA by PCR using PCR Supermix High Fidelity (Invitrogen) according to the manufacturer's specifications

[0269] PCR reactions were analysed by agarose gel electrophoresis and PCR products of the correct size were eluted from the gel using the QIAquick PCR purification kit (Qiagen, Hilden, Germany). Purified PCR products were cloned into pBAD/Myc-His-DEST expression vectors using the Gateway technology (Invitrogen) via the introduced attB sites and pDONR-zeo (Invitrogen) as entry vector as described in the manufacturer's protocols. The sequence of genes cloned by PCR was verified by DNA sequencing. This way the expression vectors, pBAD-Bsu_gi16077991_AT (comprising a gene as represented by Sequence ID 133, encoding peptide represented by Sequence ID 134), pBAD-Pae_gi9946143_AT (using primers as identified in sequence ID's 130 and 131), pBAD-Pae_gi9951072_AT (comprising a gene as represented by Sequence ID 135, encoding peptide represented by Sequence ID 136), pBAD-Pae_gi9951630_AT (comprising a gene as represented by Sequence ID 137, encoding peptide represented by Sequence ID 138) were obtained. The corresponding expression strains were obtained by transformation of chemically competent E. coli TOP10 (Invitrogen) with the pBAD constructs.

[0270] Enzymatic Reactions for Conversion of 5-Formylpentanoic Acid to 6-ACA

[0271] Unless specified otherwise, a reaction mixture was prepared comprising 10 mM 5-formylpentanoic acid, 20 mM racemic .alpha.-methylbenzylamine, and 200 .mu.M.quadrature. pyridoxal 5'-phosphate in 50 mM potassium phosphate buffer, pH 7.0. 100 .mu.l of the reaction mixture were dispensed into each well of the well plates. To start the reaction, 20 .mu.l of the cell free extracts were added, to each of the wells. Reaction mixtures were incubated on a shaker at 37.degree. C. for 24 h. Furthermore, a chemical blank mixture (without cell free extract) and a biological blank (E. coli TOP10 with pBAD/Myc-His C) were incubated under the same conditions. Samples were analysed by HPLC-MS. The results are summarised in the following table.

TABLE-US-00005 TABLE 3 6-ACA formation from 5-FVA in the presence of aminotransferases 6-ACA concentration Biocatalyst [mg/kg] E. coli TOP10/pBAD-Vfl_AT 43* E. coli TOP10/pBAD-Pae_pBAD- 930 Pae_gi_9946143 E. coli TOP10/pBAD-Pae_AT 25* E. coli TOP10/pBAD-Bwe_AT 24* E. coli TOP10/pBAD-Bsu_gi16077991_AT 288 E. coli TOP10/pBAD-Pae_gi9951072_AT 1087 E. coli TOP10/pBAD-Pae_gi9951630_AT 92 E. coli TOP10 with pBAD/Myc-His C 0.6 (biological blank) None (chemical blank) not detectable *method differed in that 10 .mu.l cell free extract was used instead of 20 .mu.l, the pyridoxal-5'-phosphate concentration was 50 .mu.M instead of 200 .mu.M and the reaction mixture volume in the wells was 190 .mu.l instead of 100 .mu.l

[0272] It is shown that 6-ACA is formed from 5-FVA in the presence of an aminotransferase, and that E. coli is capable of catalysing this formation.

Sequence CWU 1

1

1481419PRTPenicillium chrysogenum 1Met Ser Asn Ala Gln Gln Arg Leu Ser Gln Val Ser Ser His Phe Gly 1 5 10 15 Pro Gly Gly Lys Lys Gly Ala Ala Ala Ile Thr Glu Lys His Pro Asp 20 25 30 Asp Ile Val Val Thr Cys Ala Leu Arg Thr Ala Leu Thr Lys Gly Gly 35 40 45 Lys Gly Gly Phe Lys Asp Thr Ala Gly Ala Asp Leu Leu Ala Gly Val 50 55 60 Phe Lys Ala Val Leu Asn Lys Ser Gly Val Asp Pro Ser Ser Val Gln 65 70 75 80 Asp Ile Ala Val Gly Ser Val Leu Ala Pro Gly Gly Gly Ala Thr Glu 85 90 95 Phe Arg Ala Ala Ala Leu Val Ala Gly Phe Pro Glu Ser Thr Ala Val 100 105 110 Lys Ser Leu Asn Arg Gln Cys Ser Ser Gly Leu Gln Ala Ile Ala Asp 115 120 125 Ile Ala Asn Ala Ile Gln Ser Gly Met Ile Asp Val Gly Ile Gly Ala 130 135 140 Gly Val Glu Ser Met Ser Ser Gln Tyr Gly Pro Gly Ala Val Thr Glu 145 150 155 160 Phe Ser Asp Leu Leu Glu Ser His Pro Glu Ser Ala Asn Cys Lys Val 165 170 175 Pro Met Gly Val Leu Ser Glu Asn Met Ala Lys Asp Arg Gly Val Thr 180 185 190 Arg Ala Ser Gln Asp Ser Phe Ala Ala Gln Ser Tyr Gln Lys Ala Val 195 200 205 Ala Ala Gln Lys Ala Gly Leu Phe Asn Glu Glu Ile Ala Pro Leu Asp 210 215 220 Val Lys Trp Thr Asp Pro Lys Thr Gly Glu Glu Lys Thr Ile Thr Val 225 230 235 240 Lys Ala Asp Asp Gly Val Arg Gln Gly Ile Thr Ala Glu Ser Leu Gly 245 250 255 Lys Ile Lys Pro Ala Phe Ala Lys Asp Gly Ser Ile His Ala Gly Asn 260 265 270 Ala Ser Gln Ile Ser Asp Gly Ala Ala Ala Val Leu Leu Met Lys Arg 275 280 285 Ser Thr Ala Glu Arg Leu Gly Gln Lys Ile Leu Gly Lys Tyr Val Thr 290 295 300 Ala Ser Val Val Gly Val Lys Pro Leu Leu Met Gly Val Gly Pro Trp 305 310 315 320 Lys Ala Ile Pro Val Ala Leu Glu Lys Ala Gly Ile Thr Lys Asp Asp 325 330 335 Val Asp Ile Tyr Glu Ile Asn Glu Ala Phe Ala Ser Gln Cys Val Trp 340 345 350 Cys Val Asn Glu Leu Gly Ile Pro Ala Glu Lys Val Asn Pro Lys Gly 355 360 365 Gly Ala Ile Ala Phe Gly His Pro Leu Gly Cys Thr Gly Ala Arg Gln 370 375 380 Val Ser Thr Leu Phe Thr Glu Leu Lys Arg Thr Asn Lys Lys Ile Gly 385 390 395 400 Val Thr Ser Met Cys Val Gly Thr Gly Met Gly Met Ala Ala Val Trp 405 410 415 Val Ser Glu 2418PRTPenicillium chrysogenum 2Met Ser Ser Pro Gln Gln Arg Leu Asn Ser Val Ala Asn Gln Leu Ala 1 5 10 15 Pro Gly Ser Ala Arg Gln Lys Ile Leu Ala Lys Asn Pro Asp Asp Val 20 25 30 Val Ile Thr Tyr Leu Ala Arg Thr Pro Leu Thr Lys Ala Arg Lys Gly 35 40 45 Gly Leu Lys Asp Thr Thr Val Asp Asp Leu Leu Ile Ser Leu Leu Thr 50 55 60 Thr Val Arg Glu Lys Ser Asn Leu Asp Pro Asn Leu Val Glu Asp Val 65 70 75 80 Cys Val Gly Asn Val Leu Cys Pro Gly Ser Ala Tyr Val Ala Arg Ser 85 90 95 Ala Val Leu Ala Ala Gly Tyr Pro Val Thr Ala Ala Ala Ser Ile Ala 100 105 110 Asn Arg Phe Cys Ser Ser Gly Leu Leu Ala Val Gln Asn Ile Ala Asn 115 120 125 Gln Ile Ile Ala Gly Ser Ile Asp Val Gly Val Ala Val Gly Ala Glu 130 135 140 Ser Met Ser Lys Asn Ala Asp Gly Gly Ala Pro Glu Met Ser Glu Arg 145 150 155 160 Ile Thr Lys His Pro Ile Ala Ser Gln Asn Ser Gln Pro Met Gly Gln 165 170 175 Thr Ser Glu Asn Val Ala Asn Gln Phe Asn Ile Ser Arg Glu Gln His 180 185 190 Asp Arg Phe Ala Ala Asn Ser Phe Gln Lys Ala Glu Arg Ala Gln Lys 195 200 205 Ala Gly Trp Leu Glu Asp Glu Ile Val Pro Val Arg Thr Gln Ile Lys 210 215 220 Asp Pro Lys Thr Gly Glu Val Lys Asp Ile Val Val Val Arg Asp Asp 225 230 235 240 Gly Ile Arg Tyr Gly Thr Thr Pro Glu Ser Leu Gly Lys Val Arg Ala 245 250 255 Ala Phe Pro Gln Trp Ala Pro Ser Ala Thr Thr Gly Gly Asn Ala Ser 260 265 270 Gln Ile Thr Asp Gly Ala Ala Ala Leu Val Leu Met Lys Arg Ser Arg 275 280 285 Ala Gln Gln Leu Gly Gln Pro Ile Val Ala Lys Phe Cys Gly Ala Thr 290 295 300 Val Ser Gly Leu Glu Pro Arg Ile Met Gly Ile Gly Pro Ser Leu Ala 305 310 315 320 Ile Pro Lys Ile Leu Ser Lys Phe Asn Leu Ser Lys Asp Asp Ile Asp 325 330 335 Ile Phe Glu Ile Asn Glu Ala Phe Ser Ser Met Gly Val Tyr Cys Val 340 345 350 Asn Lys Leu Gly Leu Asp Glu Ser Lys Val Asn Pro Arg Gly Gly Ala 355 360 365 Ile Ala Phe Gly His Pro Leu Gly Ala Thr Gly Ala Arg Gln Val Val 370 375 380 Thr Ala Leu Ser Glu Leu Arg Arg Gln Asp Lys Arg Val Ala Val Thr 385 390 395 400 Ser Met Cys Val Gly Thr Gly Met Gly Met Ala Gly Ile Phe Val Ser 405 410 415 Glu His 3418PRTPenicillium chrysogenum 3Met Ala Ala Asp Arg Leu Ser Ser Leu Leu Ser His Leu Lys Pro Gly 1 5 10 15 Ala Thr Asn Gly Leu Ala Ala Ile Thr Gln Lys Asn Pro Asp Asp Val 20 25 30 Val Ile Thr Leu Ala Ile Arg Thr Pro Leu Thr Lys Ala Arg Lys Gly 35 40 45 Gly Phe Lys Asp Thr Glu Leu Asp Tyr Met Ile Tyr Ala Leu Leu Lys 50 55 60 Glu Thr Leu Ala Lys Ser Gln Ile Asp Pro Ala Leu Ile Glu Asp Val 65 70 75 80 Cys Leu Gly Asn Val Asn Glu Val Lys Ala Ala Tyr Met Val Arg Ala 85 90 95 Ala Ala Leu Ala Ala Gly Ile Pro His Thr Ala Gly Ala Ser Ser Val 100 105 110 Asn Arg Phe Cys Ser Ser Gly Leu Lys Ala Val Gln Asp Ile Ala Asn 115 120 125 Gln Ile Gln Leu Gly Ala Ile Asp Val Gly Val Ala Leu Gly Ala Glu 130 135 140 Leu Met Ser Ala Ser Gly Asp Arg Leu Asp Arg Pro Phe Asn Glu Glu 145 150 155 160 Val Leu Arg Asn Gln Glu Ala Ala Asp Cys Met Gln Pro Met Gly Gln 165 170 175 Thr Ser Glu Asn Val Gly Lys Asp Phe Asp Ile Pro Arg Glu Gln Gln 180 185 190 Asp Arg Tyr Ala Ala Glu Ser Phe Arg Arg Ala Glu Ala Ala Gln Asn 195 200 205 Asn Gly Trp Leu Asp Asp Glu Ile Ala Pro Ile Ala Val Lys Val Lys 210 215 220 Asp Pro Lys Thr Gly Glu Val Lys Glu Val Thr Leu Ser Arg Asp Asp 225 230 235 240 Gly Ile Arg Pro Gly Thr Thr Phe Glu Ser Leu Ser Lys Ile Arg Pro 245 250 255 Ala Phe Pro Gln Phe Gly Asp Lys Ser Thr Gly Gly Asn Ser Ser Gln 260 265 270 Val Thr Asp Gly Ala Ala Ser Val Leu Leu Met Arg Arg Ser Lys Ala 275 280 285 Ile Glu Leu Asn Gln Pro Ile Leu Ala Lys Phe Cys Gly Ala Thr Val 290 295 300 Ala Gly Val Pro Pro Arg Val Met Gly Ile Gly Pro Thr Ala Ala Ile 305 310 315 320 Pro Lys Leu Leu Ser Lys Phe Gln Leu Asp Lys Asn Asp Ile Asp Ile 325 330 335 Tyr Glu Ile Asn Glu Ala Phe Ala Ser Met Ala Val Tyr Cys Val Lys 340 345 350 Asn Leu Gly Leu Asp His Ala Lys Val Asn Pro Arg Gly Gly Ala Ile 355 360 365 Ala Leu Gly His Pro Leu Gly Ala Thr Gly Ala Arg Gln Ile Ala Thr 370 375 380 Ile Leu Ser Glu Ala Arg Arg Thr Lys Ser Lys Ile Leu Val Thr Ser 385 390 395 400 Met Cys Ile Gly Thr Gly Gln Gly Met Ala Gly Leu Phe Val Asn Glu 405 410 415 Gln Leu 4413PRTPenicillium chrysogenum 4Met Ala Ser Pro Ile Pro Arg Gly Leu Arg Gln Val Leu Gln Lys Ser 1 5 10 15 Ser Asn Asp Ile Val Ile Leu Ser Ser Leu Arg Thr Pro Val Thr Arg 20 25 30 Ala Lys Lys Gly Gly Phe Lys Asp Ala Tyr Pro Glu Glu Leu Leu Ala 35 40 45 Ser Val Leu Gln Ala Thr Leu Lys Ala Asn Pro Asn Leu Asp Pro Ala 50 55 60 Gln Ile Asp Asp Val Leu Ile Gly Ser Val Leu Gln Glu Leu Gly Gly 65 70 75 80 Ala Lys Ala Gly Arg Met Gly Gln Ile His Ala Gly Phe Pro His Ser 85 90 95 Val Pro Phe Asn Thr Ile Asn Arg Gln Cys Ser Ser Gly Leu Ala Ala 100 105 110 Ile Thr Thr Ile Ala Asn Gly Ile Arg Ala Gly Ala Ile Asn Val Gly 115 120 125 Val Gly Gly Gly Met Glu Ser Met Thr Arg Asn Tyr Gly Ser Arg Ala 130 135 140 Ile Pro Thr Val Leu Trp Pro Glu Leu Lys Glu Ser Tyr Ser Gln Asp 145 150 155 160 Ala Arg Asp Cys Ile Met Pro Met Gly Ile Thr Ser Glu Asn Val Ala 165 170 175 Ser Arg Tyr Gly Val Ser Arg Ala Asp Gln Asp Ala Phe Ala Val Glu 180 185 190 Ser His Ala Lys Ala Ser Ala Ala Gln Lys Ala Gly Arg Phe Asp Ser 195 200 205 Glu Ile Val Ser Val Thr Thr Lys Thr Leu Asp Pro Glu Asn Pro Asp 210 215 220 Ala Pro Ala Arg Asp Val Thr Val Ser Gln Asp Asp Gly Ile Arg His 225 230 235 240 Gly Leu Ser Ile Glu Lys Val Gly Ala Leu Lys Pro Ala Phe Ser Pro 245 250 255 Thr Gly Ala Ser Thr Ala Gly Asn Ser Ser Gln Val Ser Asp Gly Ala 260 265 270 Ala Ala Thr Leu Leu Met Arg Arg Ser Thr Ala Glu Glu Leu Gly Leu 275 280 285 Ser Gly Ser Ile Lys Ala Arg Trp Val Ala Ser Ala Val Ala Gly Cys 290 295 300 Ala Pro Asp Glu Met Gly Val Gly Pro Ala Val Ala Ile Pro Lys Leu 305 310 315 320 Leu Gln Thr Val Gly Val Glu Val Pro Glu Val Gly Val Trp Glu Ile 325 330 335 Asn Glu Ala Phe Ala Ser Gln Ala Leu Tyr Ser Val Arg Lys Leu Gly 340 345 350 Ile Asp Gln Ala Lys Val Asn Pro Asn Gly Gly Ala Ile Ala Ile Gly 355 360 365 His Pro Leu Gly Ala Thr Gly Ala Arg Gln Leu Ala Thr Leu Leu Pro 370 375 380 Glu Leu Glu Arg Ser Gly Gln Glu Ile Gly Val Ile Ser Met Cys Ile 385 390 395 400 Gly Thr Gly Met Gly Met Ala Gly Met Phe Val Arg Glu 405 410 5401PRTAcinetobacter sp. 5Met Leu Asn Ala Tyr Ile Tyr Asp Gly Leu Arg Thr Pro Phe Gly Arg 1 5 10 15 His Ala Gly Glu Leu Ala Ser Ile Arg Pro Asp Asp Leu Ala Gly Leu 20 25 30 Val Ile Gln Arg Leu Ile Glu Lys Thr Gly Val Ala Gly Ala Asp Ile 35 40 45 Glu Asp Val Ile Phe Gly Asp Thr Asn Gln Ala Gly Glu Asp Ser Arg 50 55 60 Asn Ile Ala Arg His Ala Ala Leu Leu Ala Gly Leu Pro Val Thr Val 65 70 75 80 Pro Gly Gln Thr Val Asn Arg Leu Cys Ala Ser Gly Leu Ala Ala Ile 85 90 95 Ile Asp Ser Ala Arg Ala Ile Thr Cys Gly Glu Gly Asp Leu Tyr Ile 100 105 110 Ala Gly Gly Val Glu Ser Met Ser Arg Ala Pro Phe Val Met Gly Lys 115 120 125 Ala Glu Ser Ala Tyr Ser Arg Asp Ala Lys Ile Tyr Asp Thr Thr Ile 130 135 140 Gly Thr Arg Phe Pro Asn Lys Lys Ile Val Ala Gln Tyr Gly Gly His 145 150 155 160 Ser Met Pro Glu Thr Gly Asp Asn Val Ala Val Glu Tyr Gly Ile Ser 165 170 175 Arg Glu Gln Ala Asp Leu Phe Ala Ala Gln Ser Gln Ala Lys Tyr Gln 180 185 190 Lys Ala Leu Glu Glu Gly Phe Phe Ala Gly Glu Ile Thr Ala Val Glu 195 200 205 Val Ser Gln Gly Lys Lys Leu Pro Pro Lys Gln Val Thr Glu Asp Glu 210 215 220 His Pro Arg Pro Ser Ser Thr Leu Glu Ala Leu Ser Lys Leu Lys Pro 225 230 235 240 Leu Phe Glu Gly Gly Val Val Thr Ala Gly Asn Ala Ser Gly Ile Asn 245 250 255 Asp Gly Ala Ala Ala Leu Leu Ile Gly Ser Glu Val Ala Gly Gln Lys 260 265 270 Tyr Gly Leu Thr Pro Met Ala Lys Ile Leu Ser Ala Ala Ala Ala Gly 275 280 285 Val Glu Pro Arg Ile Met Gly Ala Gly Pro Ile Glu Ala Ile Lys Lys 290 295 300 Ala Val Ala Arg Ala Gly Leu Thr Leu Asp Asp Leu Asp Ile Ile Glu 305 310 315 320 Ile Asn Glu Ala Phe Ala Ser Gln Val Leu Ser Cys Leu Lys Gly Leu 325 330 335 Gly Ile Asp Phe Asn Asp Pro Arg Val Asn Pro Asn Gly Gly Ala Ile 340 345 350 Ala Val Gly His Pro Leu Gly Ala Ser Gly Ala Arg Leu Ala Leu Thr 355 360 365 Val Ala Arg Glu Leu Gln Arg Arg Asn Lys Lys Tyr Ala Val Val Ser 370 375 380 Leu Cys Ile Gly Val Gly Gln Gly Leu Ala Met Val Ile Glu Asn Val 385 390 395 400 Ser 6393PRTClostridium kluyveri 6Met Arg Glu Val Val Ile Val Ser Ala Val Arg Thr Ala Ile Gly Ser 1 5 10 15 Phe Gly Gly Thr Leu Lys Asp Val Ser Ala Val Asp Leu Gly Ala Ile 20 25 30 Val Ile Lys Glu Ala Val Lys Arg Ala Gly Ile Lys Pro Glu Gln Val 35 40 45 Asp Glu Val Ile Phe Gly Asn Val Ile Gln Ala Gly Val Gly Gln Ser 50 55 60 Leu Ala Arg Gln Ser Ala Val Tyr Ala Gly Leu Pro Val Glu Val Pro 65 70 75 80 Ala Phe Thr Val Asn Lys Leu Cys Gly Ser Gly Leu Arg Thr Val Ser 85 90 95 Leu Ala Ala Ser Leu Ile Ser Asn Gly Asp Ala Asp Thr Ile Val Val 100 105 110 Gly Gly Ser Glu Asn Met Ser Ala Ser Pro Tyr Leu Ile Pro Lys Ala 115 120 125 Arg Phe Gly Tyr Arg Met Gly Glu Ala Lys Ile Tyr Asp Ala Met Leu 130 135 140 His Asp Gly Leu Ile Asp Ser Phe Asn Asn Tyr His Met Gly Ile Thr 145 150 155 160 Ala Glu Asn Ile Ala Glu Lys Trp Gly Ile Thr Arg Glu Asp Gln Asp 165 170 175 Lys Phe Ala Leu Ala Ser Gln Gln Lys Ala Glu Ala Ala Ile Lys Ala 180 185 190 Gly Lys Phe Lys Asp Glu Ile Val Pro Val Thr Val Lys Met Lys Lys 195 200 205 Lys Glu Val Val Phe Asp Thr

Asp Glu Asp Pro Arg Phe Gly Thr Thr 210 215 220 Ile Glu Thr Leu Ala Lys Leu Lys Pro Ala Phe Lys Arg Asp Gly Thr 225 230 235 240 Gly Thr Val Thr Ala Gly Asn Ser Ser Gly Ile Asn Asp Ser Ser Ala 245 250 255 Ala Leu Ile Leu Met Ser Ala Asp Lys Ala Lys Glu Leu Gly Val Lys 260 265 270 Pro Met Ala Lys Tyr Val Asp Phe Ala Ser Ala Gly Leu Asp Pro Ala 275 280 285 Ile Met Gly Tyr Gly Pro Tyr Tyr Ala Thr Lys Lys Val Leu Ala Lys 290 295 300 Thr Asn Leu Thr Ile Lys Asp Phe Asp Leu Ile Glu Ala Asn Glu Ala 305 310 315 320 Phe Ala Ala Gln Ser Ile Ala Val Ala Arg Asp Leu Glu Phe Asp Met 325 330 335 Ser Lys Val Asn Val Asn Gly Gly Ala Ile Ala Leu Gly His Pro Val 340 345 350 Gly Cys Ser Gly Ala Arg Ile Leu Val Thr Leu Leu His Glu Met Gln 355 360 365 Lys Arg Asp Ala Lys Lys Gly Leu Ala Thr Leu Cys Ile Gly Gly Gly 370 375 380 Gln Gly Thr Ala Val Val Val Glu Arg 385 390 7391PRTClostridium kluyveri 7Met Lys Asp Ala Val Ile Val Ser Ala Val Arg Thr Ala Ile Gly Ser 1 5 10 15 Phe Gly Gly Thr Leu Lys Asp Ile Ser Ala Val Asp Leu Gly Ala Ile 20 25 30 Val Ile Lys Glu Ala Val Lys Arg Ala Gly Ile Lys Pro Glu Gln Val 35 40 45 Asp Glu Val Ile Phe Gly Asn Val Ile Gln Ala Gly Leu Gly Gln Ser 50 55 60 Pro Ala Arg Gln Ala Ala Val Lys Ala Gly Ile Pro Val Glu Val Pro 65 70 75 80 Ala Phe Thr Leu Asn Lys Val Cys Gly Ser Gly Leu Arg Ser Val Ser 85 90 95 Leu Ala Ala Gln Leu Ile Lys Ile Gly Asp Asp Asp Ile Val Val Val 100 105 110 Gly Gly Thr Glu Asn Met Ser Ala Ala Pro Tyr Leu Leu Pro Lys Ala 115 120 125 Arg Trp Gly His Arg Met Gly Glu Gly Lys Leu Val Asp Ala Met Ile 130 135 140 Lys Asp Gly Leu Trp Glu Ala Phe Asn Asn Tyr His Met Gly Ile Thr 145 150 155 160 Ala Glu Asn Ile Ala Glu Lys Trp Gly Ile Thr Arg Asp Met Gln Asp 165 170 175 Glu Phe Ala Leu Ala Ser Gln Gln Lys Ala Glu Ala Ala Ile Lys Ala 180 185 190 Gly Lys Phe Lys Asp Glu Ile Val Pro Val Thr Val Lys Gln Lys Lys 195 200 205 Lys Glu Ile Ile Phe Asp Thr Asp Glu Phe Pro Arg Phe Gly Thr Thr 210 215 220 Ile Glu Ala Leu Ala Lys Leu Lys Pro Ser Phe Lys Lys Asp Gly Thr 225 230 235 240 Val Thr Ala Gly Asn Ala Ser Gly Ile Asn Asp Ala Ala Ala Ala Leu 245 250 255 Val Val Met Ser Ala Asp Lys Ala Lys Glu Leu Gly Ile Lys Pro Leu 260 265 270 Ala Lys Ile Val Ser Tyr Gly Ser Lys Gly Leu Asp Pro Thr Ile Met 275 280 285 Gly Tyr Gly Pro Phe Tyr Ala Thr Lys Leu Ala Leu Glu Lys Ala Asn 290 295 300 Leu Ser Ile Ala Asp Leu Asp Leu Ile Glu Ala Asn Glu Ala Phe Ala 305 310 315 320 Ser Gln Ser Leu Ala Val Ala Lys Asp Leu Glu Phe Asp Met Ser Lys 325 330 335 Val Asn Val Asn Gly Gly Ala Ile Ala Leu Gly His Pro Val Gly Cys 340 345 350 Ser Gly Ala Arg Ile Leu Val Thr Leu Leu Tyr Glu Met Gln Arg Arg 355 360 365 Asp Ala Lys Lys Gly Leu Ala Thr Leu Cys Ile Gly Gly Gly Met Gly 370 375 380 Thr Ala Leu Ile Val Glu Arg 385 390 8391PRTClostridium kluyveri 8Met Arg Glu Val Val Ile Val Ser Ala Val Arg Thr Ala Ile Gly Ser 1 5 10 15 Phe Gly Gly Thr Leu Lys Asp Val Pro Ala Val Glu Leu Gly Ala Val 20 25 30 Val Ile Lys Glu Ala Val Lys Arg Ala Asn Val Lys Pro Glu Gln Ile 35 40 45 Asp Glu Val Ile Phe Gly Asn Val Ile Gln Ala Gly Leu Gly Gln Ser 50 55 60 Pro Ala Arg Gln Ala Ala Val Lys Ala Gly Ile Pro Val Glu Val Pro 65 70 75 80 Ala Phe Thr Leu Asn Lys Val Cys Gly Ser Gly Leu Arg Ser Val Ser 85 90 95 Leu Ala Ala Gln Val Ile Lys Ala Gly Asp Ala Asp Ile Val Val Val 100 105 110 Gly Gly Met Glu Asn Met Ser Ala Ala Pro Tyr Val Leu Pro Lys Ala 115 120 125 Arg Trp Gly His Arg Met Gly Glu Gly Lys Ile Val Asp Ala Met Ile 130 135 140 Lys Asp Gly Leu Trp Glu Ala Phe Asn Asn Tyr His Met Gly Ile Thr 145 150 155 160 Ala Glu Asn Ile Ala Glu Lys Trp Gly Leu Thr Arg Glu Glu Gln Asp 165 170 175 Glu Phe Ser Ala Ala Ser Gln Gln Lys Ala Glu Ala Ala Gln Lys Ala 180 185 190 Gly Lys Phe Lys Asp Glu Ile Val Pro Val Thr Val Lys Ile Lys Lys 195 200 205 Lys Glu Val Val Phe Asp Thr Asp Glu Tyr Ile Lys Pro Gly Thr Thr 210 215 220 Val Glu Thr Leu Ala Lys Leu Arg Pro Ala Phe Lys Lys Asp Gly Thr 225 230 235 240 Val Thr Ala Gly Asn Ala Ser Gly Ile Asn Asp Ala Ala Ala Ala Leu 245 250 255 Val Val Met Ser Ala Asp Lys Ala Lys Glu Leu Gly Ile Lys Pro Leu 260 265 270 Ala Lys Ile Val Ser Tyr Gly Ser Ala Gly Leu Asp Pro Thr Ile Met 275 280 285 Gly Tyr Gly Pro Phe His Ala Thr Lys Ala Ala Leu Glu Lys Ala Asn 290 295 300 Leu Ser Val Ala Asp Leu Asp Leu Ile Glu Ala Asn Glu Ala Phe Ala 305 310 315 320 Ser Gln Ser Leu Ala Val Ala Lys Asp Leu Glu Phe Asp Met Ser Lys 325 330 335 Val Asn Val Asn Gly Gly Ala Ile Ala Leu Gly His Pro Val Gly Ala 340 345 350 Ser Gly Ala Arg Ile Leu Val Thr Leu Leu His Glu Met Gln Arg Arg 355 360 365 Asp Ala Lys Lys Gly Leu Ala Thr Leu Cys Ile Gly Gly Gly Met Gly 370 375 380 Thr Ala Leu Ile Val Glu Arg 385 390 9408PRTCorynebacterium glutamicum 9Met Asn Pro Gln Asp Ile Val Ile Cys Ser Pro Leu Arg Thr Pro Val 1 5 10 15 Gly Ala Tyr Gly Gly Ser Phe Thr Gly Val Pro Val Glu Glu Leu Ala 20 25 30 Thr Thr Val Ile Asn Ala Ile Val Glu Ala Thr Gly Ile Thr Gly Asp 35 40 45 Asp Val Asp Asp Leu Ile Leu Gly Gln Ala Ser Pro Asn Gly Ala Ala 50 55 60 Pro Ala Leu Gly Arg Val Val Ala Leu Asp Ser Lys Leu Gly Gln Asn 65 70 75 80 Val Pro Gly Met Gln Leu Asp Arg Arg Cys Gly Ser Gly Leu Gln Ala 85 90 95 Ile Val Thr Ala Ala Ala His Val Ala Ser Gly Ala Ala Asp Leu Ile 100 105 110 Ile Ala Gly Gly Ala Glu Ser Met Ser Arg Val Glu Tyr Thr Val Ser 115 120 125 Gly Asp Ile Arg Trp Gly Val Lys Gly Gly Asp Met Gln Leu Arg Asp 130 135 140 Arg Leu Ala Glu Ala Arg Glu Thr Ala Gly Gly Arg Asn His Pro Ile 145 150 155 160 Pro Gly Gly Met Ile Glu Thr Ala Glu Asn Leu Arg Arg Glu Tyr Gly 165 170 175 Ile Ser Arg Glu Glu Gln Asp Lys Ile Ser Ala Ala Ser Gln Gln Arg 180 185 190 Trp Gly Lys Ala Ala Asp Ala Gly Leu Phe Asp Asp Glu Ile Val Pro 195 200 205 Val Thr Val Pro Ala Lys Lys Arg Gly Gln Glu Pro Thr Ile Val Ser 210 215 220 Arg Asp Glu His Gly Arg Pro Gly Thr Thr Val Glu Lys Leu Ala Ala 225 230 235 240 Leu Arg Pro Ile Met Gly Arg Gln Asp Ala Glu Ala Thr Val Thr Ala 245 250 255 Gly Asn Ala Ser Gly Gln Asn Asp Gly Ala Ala Ala Val Ile Val Thr 260 265 270 Thr Arg Ala Lys Ala Glu Glu Lys Gly Leu Arg Pro Val Met Arg Leu 275 280 285 Ala Gly Trp Ser Val Ala Ala Val Pro Pro Glu Thr Met Gly Ile Gly 290 295 300 Pro Val Pro Ala Thr Lys Lys Val Leu Asp Arg Leu Gly Leu Thr Leu 305 310 315 320 Glu Asp Ile Gly Ala Ile Glu Leu Asn Glu Ala Phe Ala Ala Gln Ala 325 330 335 Leu Ser Val Leu Lys Glu Trp Asn Ile Ser Trp Glu Asp Glu Arg Val 340 345 350 Asn Pro Leu Gly Ser Gly Ile Ser Met Gly His Pro Val Gly Ala Thr 355 360 365 Gly Ala Arg Met Ala Val Thr Leu Ala His Arg Met Gln Arg Glu Asn 370 375 380 Thr Gln Tyr Gly Leu Ala Thr Met Cys Ile Gly Gly Gly Gln Gly Leu 385 390 395 400 Ala Ala Val Phe Glu Lys Glu Asn 405 10401PRTEscherichia coli 10Met Arg Glu Ala Phe Ile Cys Asp Gly Ile Arg Thr Pro Ile Gly Arg 1 5 10 15 Tyr Gly Gly Ala Leu Ser Ser Val Arg Ala Asp Asp Leu Ala Ala Ile 20 25 30 Pro Leu Arg Glu Leu Leu Val Arg Asn Pro Arg Leu Asp Ala Glu Cys 35 40 45 Ile Asp Asp Val Ile Leu Gly Cys Ala Asn Gln Ala Gly Glu Asp Asn 50 55 60 Arg Asn Val Ala Arg Met Ala Thr Leu Leu Ala Gly Leu Pro Gln Ser 65 70 75 80 Val Ser Gly Thr Thr Ile Asn Arg Leu Cys Gly Ser Gly Leu Asp Ala 85 90 95 Leu Gly Phe Ala Ala Arg Ala Ile Lys Ala Gly Asp Gly Asp Leu Leu 100 105 110 Ile Ala Gly Gly Val Glu Ser Met Ser Arg Ala Pro Phe Val Met Gly 115 120 125 Lys Ala Ala Ser Ala Phe Ser Arg Gln Ala Glu Met Phe Asp Thr Thr 130 135 140 Ile Gly Trp Arg Phe Val Asn Pro Leu Met Ala Gln Gln Phe Gly Thr 145 150 155 160 Asp Ser Met Pro Glu Thr Ala Glu Asn Val Ala Glu Leu Leu Lys Ile 165 170 175 Ser Arg Glu Asp Gln Asp Ser Phe Ala Leu Arg Ser Gln Gln Arg Thr 180 185 190 Ala Lys Ala Gln Ser Ser Gly Ile Leu Ala Glu Glu Ile Val Pro Val 195 200 205 Val Leu Lys Asn Lys Lys Gly Val Val Thr Glu Ile Gln His Asp Glu 210 215 220 His Leu Arg Pro Glu Thr Thr Leu Glu Gln Leu Arg Gly Leu Lys Ala 225 230 235 240 Pro Phe Arg Ala Asn Gly Val Ile Thr Ala Gly Asn Ala Ser Gly Val 245 250 255 Asn Asp Gly Ala Ala Ala Leu Ile Ile Ala Ser Glu Gln Met Ala Ala 260 265 270 Ala Gln Gly Leu Thr Pro Arg Ala Arg Ile Val Ala Met Ala Thr Ala 275 280 285 Gly Val Glu Pro Arg Leu Met Gly Leu Gly Pro Val Pro Ala Thr Arg 290 295 300 Arg Val Leu Glu Arg Ala Gly Leu Ser Ile His Asp Met Asp Val Ile 305 310 315 320 Glu Leu Asn Glu Ala Phe Ala Ala Gln Ala Leu Gly Val Leu Arg Glu 325 330 335 Leu Gly Leu Pro Asp Asp Ala Pro His Val Asn Pro Asn Gly Gly Ala 340 345 350 Ile Ala Leu Gly His Pro Leu Gly Met Ser Gly Ala Arg Leu Ala Leu 355 360 365 Ala Ala Ser His Glu Leu His Arg Arg Asn Gly Arg Tyr Ala Leu Cys 370 375 380 Thr Met Cys Ile Gly Val Gly Gln Gly Ile Ala Met Ile Leu Glu Arg 385 390 395 400 Val 11400PRTPseudomonas putida 11Met His Asp Val Phe Ile Cys Asp Ala Ile Arg Thr Pro Ile Gly Arg 1 5 10 15 Phe Gly Gly Ala Leu Ala Ser Val Arg Ala Asp Asp Leu Ala Ala Val 20 25 30 Pro Leu Lys Ala Leu Ile Glu Arg Asn Pro Gly Val Gln Trp Asp Gln 35 40 45 Val Asp Glu Val Phe Phe Gly Cys Ala Asn Gln Ala Gly Glu Asp Asn 50 55 60 Arg Asn Val Ala Arg Met Ala Leu Leu Leu Ala Gly Leu Pro Glu Ser 65 70 75 80 Ile Pro Gly Val Thr Leu Asn Arg Leu Cys Ala Ser Gly Met Asp Ala 85 90 95 Val Gly Thr Ala Phe Arg Ala Ile Ala Ser Gly Glu Met Glu Leu Val 100 105 110 Ile Ala Gly Gly Val Glu Ser Met Ser Arg Ala Pro Phe Val Met Gly 115 120 125 Lys Ala Glu Ser Ala Tyr Ser Arg Asn Met Lys Leu Glu Asp Thr Thr 130 135 140 Ile Gly Trp Arg Phe Ile Asn Pro Leu Met Lys Ser Gln Tyr Gly Val 145 150 155 160 Asp Ser Met Pro Glu Thr Ala Asp Asn Val Ala Asp Asp Tyr Gln Val 165 170 175 Ser Arg Ala Asp Gln Asp Ala Phe Ala Leu Arg Ser Gln Gln Lys Ala 180 185 190 Ala Ala Ala Gln Ala Ala Gly Phe Phe Ala Glu Glu Ile Val Pro Val 195 200 205 Arg Ile Ala His Lys Lys Gly Glu Ile Ile Val Glu Arg Asp Glu His 210 215 220 Leu Arg Pro Glu Thr Thr Leu Glu Ala Leu Thr Lys Leu Lys Pro Val 225 230 235 240 Asn Gly Pro Asp Lys Thr Val Thr Ala Gly Asn Ala Ser Gly Val Asn 245 250 255 Asp Gly Ala Ala Ala Met Ile Leu Ala Ser Ala Ala Ala Val Lys Lys 260 265 270 His Gly Leu Thr Pro Arg Ala Arg Val Leu Gly Met Ala Ser Gly Gly 275 280 285 Val Ala Pro Arg Val Met Gly Ile Gly Pro Val Pro Ala Val Arg Lys 290 295 300 Leu Thr Glu Arg Leu Gly Ile Ala Val Ser Asp Phe Asp Val Ile Glu 305 310 315 320 Leu Asn Glu Ala Phe Ala Ser Gln Gly Leu Ala Val Leu Arg Glu Leu 325 330 335 Gly Val Ala Asp Asp Ala Pro Gln Val Asn Pro Asn Gly Gly Ala Ile 340 345 350 Ala Leu Gly His Pro Leu Gly Met Ser Gly Ala Arg Leu Val Leu Thr 355 360 365 Ala Leu His Gln Leu Glu Lys Ser Gly Gly Arg Lys Gly Leu Ala Thr 370 375 380 Met Cys Val Gly Val Gly Gln Gly Leu Ala Leu Ala Ile Glu Arg Val 385 390 395 400 12394PRTRalstonia eutropha 12Met Thr Arg Glu Val Val Val Val Ser Gly Val Arg Thr Ala Ile Gly 1 5 10 15 Thr Phe Gly Gly Ser Leu Lys Asp Val Ala Pro Ala Glu Leu Gly Ala 20 25 30 Leu Val Val Arg Glu Ala Leu Ala Arg Ala Gln Val Ser Gly Asp Asp 35 40 45 Val Gly His Val Val Phe Gly Asn Val Ile Gln Thr Glu Pro Arg Asp 50 55 60 Met Tyr Leu Gly Arg Val Ala Ala Val Asn Gly Gly Val Thr Ile Asn 65 70 75 80 Ala Pro Ala Leu Thr Val Asn Arg Leu Cys Gly Ser Gly Leu Gln Ala 85 90 95 Ile Val Ser Ala Ala Gln Thr Ile Leu Leu Gly Asp Thr Asp Val Ala 100

105 110 Ile Gly Gly Gly Ala Glu Ser Met Ser Arg Ala Pro Tyr Leu Ala Pro 115 120 125 Ala Ala Arg Trp Gly Ala Arg Met Gly Asp Ala Gly Leu Val Asp Met 130 135 140 Met Leu Gly Ala Leu His Asp Pro Phe His Arg Ile His Met Gly Val 145 150 155 160 Thr Ala Glu Asn Val Ala Lys Glu Tyr Asp Ile Ser Arg Ala Gln Gln 165 170 175 Asp Glu Ala Ala Leu Glu Ser His Arg Arg Ala Ser Ala Ala Ile Lys 180 185 190 Ala Gly Tyr Phe Lys Asp Gln Ile Val Pro Val Val Ser Lys Gly Arg 195 200 205 Lys Gly Asp Val Thr Phe Asp Thr Asp Glu His Val Arg His Asp Ala 210 215 220 Thr Ile Asp Asp Met Thr Lys Leu Arg Pro Val Phe Val Lys Glu Asn 225 230 235 240 Gly Thr Val Thr Ala Gly Asn Ala Ser Gly Leu Asn Asp Ala Ala Ala 245 250 255 Ala Val Val Met Met Glu Arg Ala Glu Ala Glu Arg Arg Gly Leu Lys 260 265 270 Pro Leu Ala Arg Leu Val Ser Tyr Gly His Ala Gly Val Asp Pro Lys 275 280 285 Ala Met Gly Ile Gly Pro Val Pro Ala Thr Lys Ile Ala Leu Glu Arg 290 295 300 Ala Gly Leu Gln Val Ser Asp Leu Asp Val Ile Glu Ala Asn Glu Ala 305 310 315 320 Phe Ala Ala Gln Ala Cys Ala Val Thr Lys Ala Leu Gly Leu Asp Pro 325 330 335 Ala Lys Val Asn Pro Asn Gly Ser Gly Ile Ser Leu Gly His Pro Ile 340 345 350 Gly Ala Thr Gly Ala Leu Ile Thr Val Lys Ala Leu His Glu Leu Asn 355 360 365 Arg Val Gln Gly Arg Tyr Ala Leu Val Thr Met Cys Ile Gly Gly Gly 370 375 380 Gln Gly Ile Ala Ala Ile Phe Glu Arg Ile 385 390 13406PRTRhodococcus sp. 13Met Ala Glu Val Phe Leu Val Asp Gly Ala Arg Thr Pro Gln Gly Arg 1 5 10 15 Tyr Gly Gly Ala Leu Ala Gly Val Arg Pro Asp Asp Leu Ala Gly Leu 20 25 30 Val Val Ala Glu Ala Ala Arg Arg Ala Gly Ile Pro Gly Asp Ala Val 35 40 45 Asp Glu Val Ile Leu Gly Ala Ala Asn Gln Ala Gly Glu Asp Asn Arg 50 55 60 Asp Val Ala Arg Met Ala Val Leu Leu Ala Gly Leu Pro Asp Ser Val 65 70 75 80 Pro Gly Tyr Thr Val Asn Arg Leu Cys Ala Ser Gly Leu Thr Ala Val 85 90 95 Ala Ser Ala Ala His Thr Ile Arg Ser Gly Glu Ala Asp Ile Val Ile 100 105 110 Ala Gly Gly Val Glu Ser Met Thr Arg Ala Pro Trp Val Met Ala Lys 115 120 125 Pro Gly Thr Pro Trp Ala Arg Pro Gly Glu Val Ala Asp Thr Ser Leu 130 135 140 Gly Trp Arg Phe Thr Asn Pro Arg Phe Thr Ala Ala Asp Arg Asp Val 145 150 155 160 Pro Ala Gly Ala Gly Pro Asp Val Arg Lys Val Thr Leu Ser Met Gly 165 170 175 Glu Thr Ala Glu Glu Val Ala Ala Leu Glu Gly Val Thr Arg Ala Glu 180 185 190 Ser Asp Ala Phe Ala Leu Arg Ser Gln Glu Arg Ala Ile Ala Ala Val 195 200 205 Asp Ala Gly Arg Phe Glu Arg Glu Ile Val Pro Val Pro Val Arg Asp 210 215 220 Gly Glu Leu Ala Ala Asp Glu Thr Pro Arg Arg Gly Thr Thr Leu Glu 225 230 235 240 Lys Leu Gly Ser Leu Lys Pro Val Phe Arg Thr Gly Gly Ile Val Thr 245 250 255 Ala Gly Ser Ser Ser Ser Leu Ser Asp Gly Ala Ala Ala Leu Val Val 260 265 270 Ala Ser Glu Ala Ala Val Glu Lys Tyr Gly Leu Thr Val Arg Gly Arg 275 280 285 Ile Val Thr Ser Ala Ser Ala Gly Ile Ala Pro Asn Val Met Gly Leu 290 295 300 Gly Pro Val Pro Ala Thr Arg Lys Ala Leu Ala Arg Ala Asn Trp Ser 305 310 315 320 Ile Ser Asp Leu Gly Ala Ala Glu Leu Asn Glu Ala Phe Ala Ala Gln 325 330 335 Ser Leu Gly Val Ile Arg Gln Leu Lys Leu Asp Glu Ser Ile Val Asn 340 345 350 Ala Asp Gly Gly Ala Ile Ala Leu Gly His Pro Leu Gly Cys Ser Gly 355 360 365 Ala Arg Ile Leu Leu Thr Leu Leu Gly Arg Met Glu Arg Glu Gly Ala 370 375 380 Arg Arg Gly Leu Ala Thr Leu Cys Val Gly Val Gly Gln Gly Val Ala 385 390 395 400 Met Leu Ile Glu Ala Pro 405 14327PRTPenicillium chrysogenum 14Met Ser Ala Pro Gly Ala Gly His Glu Phe Pro Ala Gln Glu Val Ser 1 5 10 15 Trp Gln Lys Arg Asp Val Leu Leu Phe Ala Asn Ser Ile Gly Val Lys 20 25 30 Ala Asp Glu Leu His Phe Leu Tyr Glu Leu His Pro Asn Phe Ala Val 35 40 45 Phe Pro Thr Tyr Ser Leu Ile Leu Arg Met Ser Lys Asn Thr Ser Asp 50 55 60 Phe Arg Thr Ile Ala Leu Thr Pro Lys Pro Leu Ala Phe Lys Leu Thr 65 70 75 80 Asp Gln Glu Val Thr Asp Phe Tyr Ala Arg Gln Lys Ala Val His Ile 85 90 95 Pro Gly Val Pro Asp Leu Asp His Arg His Gly Val Asp Gly Gln Arg 100 105 110 Lys Ile Thr Ile Leu Lys Pro Leu Pro Thr Thr Ser Ala Gly Arg Lys 115 120 125 Phe Glu Leu Arg Asn Lys Val Ile Gly Val Tyr Asp Lys Gly Lys Pro 130 135 140 Gly Thr Val Ile Glu Thr Glu Gln Ser Ile Val Asp Lys Glu Ser Gly 145 150 155 160 Glu Val Tyr Ser Lys Val Val Ser Ser Gly Phe Leu Val Gly Gln Gly 165 170 175 Gly Trp Gly Gly Pro Lys Gly Pro Ser Thr Val Asn Tyr Ala Pro Pro 180 185 190 Glu Gly Arg Ala Pro Asp Ala Thr His Val Val Gln Ser Asn Ser Glu 195 200 205 Thr Ala His Leu Tyr Arg Leu Asn Gly Asp Tyr Asn Pro Leu His Ala 210 215 220 Thr Pro Glu Pro Gly Gln Lys Met Gly Phe Gly Gly Ile Ile Ile His 225 230 235 240 Gly Leu Phe Ser Trp Asn Ser Ala Ala His Gly Ile Leu Arg Glu Phe 245 250 255 Gly Gly Ser Asn Pro Ala Asn Met Lys Glu Phe Gln Ala Arg Phe Ala 260 265 270 Ser Pro Val Arg Pro Gly Asp Lys Leu Thr Thr Glu Ile Trp Arg Met 275 280 285 Gly Asn Ile Gln Asp Gly Tyr Glu Glu Ile Arg Phe Val Thr Lys Asn 290 295 300 Asp Lys Gly Arg Val Val Leu Ser Asn Gly Arg Cys Leu Leu Lys Val 305 310 315 320 Thr Gly Val Lys Ser Lys Leu 325 15901PRTPenicillium chrysogenum 15Met Ser Glu Leu Arg Phe Asp Asn Gln Thr Val Val Val Thr Gly Ala 1 5 10 15 Gly Gly Gly Leu Gly Lys Ala Tyr Ala Leu Phe Phe Ala Ser Arg Gly 20 25 30 Ala Asn Val Val Val Asn Asp Leu Gly Ala Ser His Lys Gly Glu Gly 35 40 45 Lys Ser Gly Lys Ala Ala Asp Val Val Val Glu Glu Ile Arg Ala Ala 50 55 60 Gly Gly Lys Ala Val Ala Asn Tyr Asp Ser Val Glu Asn Gly Asp Ala 65 70 75 80 Ile Ile Glu Thr Ala Ile Lys Ala Phe Gly Arg Ile Asp Ile Leu Leu 85 90 95 Asn Asn Ala Gly Ile Leu Arg Asp Ile Ser Phe Lys Asn Met Lys Asp 100 105 110 Ala Asp Trp Asp Leu Ile Asn Arg Val His Thr Tyr Gly Ala Tyr Lys 115 120 125 Cys Ala Arg Ala Ala Trp Pro His Phe Arg Lys Gln Lys Phe Gly Arg 130 135 140 Val Ile Asn Thr Ala Ser Ala Ala Gly Leu Phe Gly Ser Phe Gly Gln 145 150 155 160 Ala Asn Tyr Ser Ala Ala Lys Leu Gly Gln Val Gly Phe Thr Glu Thr 165 170 175 Leu Ala Lys Glu Gly Ala Lys Tyr Asn Ile Ile Ala Asn Val Ile Ala 180 185 190 Pro Ile Ala Ala Ser Arg Met Thr Ala Thr Val Met Pro Pro Asp Val 195 200 205 Leu Glu Asn Leu Lys Pro Asp Trp Val Val Pro Leu Val Ala Ala Leu 210 215 220 Val His Ser Ser Asn Thr Thr Glu Thr Gly Gly Ile Tyr Glu Val Gly 225 230 235 240 Gly Gly His Val Ala Lys Leu Arg Trp Glu Arg Ala Lys Gly Ala Leu 245 250 255 Leu Lys Thr Asp Asp Ser Leu Thr Pro Gly Ala Ile Ala Arg Lys Trp 260 265 270 Asn Asp Val Asn Asp Phe Ser Gln Pro Glu Tyr Pro Thr Gly Pro Ala 275 280 285 Asp Phe Met Ala Phe Leu Glu Asp Gly Leu Lys Thr Pro Ser Ala Gln 290 295 300 Pro Gly Gln Glu Pro Asp Phe Lys Gly Arg Val Ala Leu Val Thr Gly 305 310 315 320 Gly Gly Ala Gly Leu Gly Arg Ala Tyr Cys Leu Gln Phe Ala Lys Leu 325 330 335 Gly Ala Ser Val Val Val Asn Asp Leu Val Asp Pro Glu Pro Val Val 340 345 350 Gln Glu Ile Lys Lys Leu Gly Gly Lys Ala Val Gly Asn Lys Ala Ser 355 360 365 Cys Glu Asp Gly Asp Ala Val Val Lys Ser Ala Ile Asp Ala Phe Gly 370 375 380 Arg Ile Asp Ile Leu Val Asn Asn Ala Gly Ile Leu Arg Asp Lys Ala 385 390 395 400 Phe Thr Asn Met Asp Asp Asn Leu Trp Asn Ser Val Val Asn Val His 405 410 415 Leu Arg Gly Thr Tyr Lys Val Thr Lys Ala Ala Trp Pro Tyr Phe Leu 420 425 430 Lys Gln Lys Tyr Gly Arg Val Val Asn Thr Ala Ser Thr Ser Gly Ile 435 440 445 Tyr Gly Asn Phe Gly Gln Ala Asn Tyr Ala Ala Ala Lys Leu Gly Ile 450 455 460 Leu Gly Leu Ser Arg Thr Leu Ala Leu Glu Gly Ala Lys Tyr Asn Ile 465 470 475 480 Lys Val Asn Thr Ile Ala Pro Asn Ala Gly Thr Asn Met Thr Arg Thr 485 490 495 Ile Met Pro Glu Glu Met Val Gln Ala Phe Lys Pro Asp Tyr Val Ala 500 505 510 Pro Leu Val Val Leu Leu Cys Ser Asp Met Ala Pro Glu Pro Ser Thr 515 520 525 Lys Gly Leu Phe Glu Cys Gly Ser Gly Trp Phe Gly Arg Thr Arg Trp 530 535 540 Gln Arg Thr Gly Gly His Gly Phe Pro Val Asp Val Lys Leu Thr Pro 545 550 555 560 Glu Glu Val Val Arg Asn Trp Lys Gln Ile Ile Asn Phe Asp Asp Gly 565 570 575 Arg Ala Asp His Pro Glu Asp Gly Gln Ala Gly Ala Glu Lys Ile Met 580 585 590 Ala Asn Met Ser Asn Arg Val His Gly Asp Thr Ser Thr Glu Asn Glu 595 600 605 Thr Leu Lys Asn Ile Lys Lys Ala Lys Ala Leu Ser Ser Glu Gly Thr 610 615 620 Pro Phe Asn Tyr Glu Asp Arg Asp Val Ile Leu Tyr Asn Leu Ser Leu 625 630 635 640 Gly Ala Lys Arg Thr Asp Leu Pro Leu Val Tyr Glu Asn Asn Asp Gln 645 650 655 Phe Gln Ala Leu Pro Ser Tyr Gly Val Val Pro Trp Phe Asn Thr Ala 660 665 670 Thr Pro Trp Asn Met Asp Asp Leu Val Lys Asp Phe Ser Pro Met Met 675 680 685 Leu Leu His Gly Glu Gln Tyr Met Glu Val Arg Lys Phe Pro Ile Pro 690 695 700 Thr Thr Ala Asn Thr Leu Thr Tyr Pro Lys Leu Ile Asp Val Ile Asp 705 710 715 720 Lys Gly Asn Ala Ala Ile Val Val Ala Gly Tyr Thr Thr Lys Asp Ala 725 730 735 Lys Thr Gly Glu Asp Leu Phe Tyr Asn Glu Ser Ser Val Phe Ile Arg 740 745 750 Gly Ser Gly Gly Phe Gly Gly Ser Pro Lys Pro Thr Ala Val Arg Pro 755 760 765 Lys Ala Ala Thr Ala Ala Tyr Lys Ala Pro Gln Arg Gln Pro Asp Ala 770 775 780 Val Val Glu Glu Lys Thr Ser Glu Asp Gln Ala Ala Leu Tyr Arg Leu 785 790 795 800 Asn Gly Asp Arg Asn Pro Leu His Ile Asp Pro Glu Phe Ser Lys Val 805 810 815 Gly Gly Phe Lys Thr Pro Ile Leu His Gly Leu Cys Ser Leu Gly Val 820 825 830 Ser Ala Lys Ala Val Phe Ser Lys Tyr Gly Pro Tyr Lys Asn Leu Lys 835 840 845 Val Arg Phe Ala Gly Val Val Leu Pro Gly Gln Thr Leu Lys Thr Glu 850 855 860 Met Trp Lys Glu Gly Asn Thr Val Leu Phe Gln Ala Thr Val Val Glu 865 870 875 880 Thr Gly Lys Pro Ala Ile Thr Gly Ala Gly Ala Glu Leu Leu Glu Gly 885 890 895 Ala Lys Ala Lys Leu 900 16319PRTPenicillium chrysogenum 16Met Leu Asn Ser Thr Leu Arg Phe Val Ser Leu Arg Arg Gly Pro Thr 1 5 10 15 Val Ala Arg Asn Phe Cys Ser Thr Ser Ala Val Arg Ala Ala Glu Val 20 25 30 Lys Ser Leu Gly Val Val Gly Ala Gly Gln Met Gly Leu Gly Ile Ala 35 40 45 Leu Val Ala Ala Gln Lys Ala Asn Val Pro Val Thr Leu Val Asp Thr 50 55 60 Ser Gln Ala Ser Leu Asp Lys Gly Leu Lys Phe Ala Asp Lys Leu Leu 65 70 75 80 Glu Lys Asp Val Ala Lys Gln Arg Leu Thr Arg Glu Ala Ala Asp Glu 85 90 95 Ala Arg Gly Leu Ile Ser Thr Ser Leu Thr Leu Asp Gly Leu Ser Ala 100 105 110 Val Asp Phe Val Ile Glu Ala Val Pro Glu Ile Pro Asp Leu Lys Thr 115 120 125 Lys Ile Phe Ala Ser Leu Ala Gln Ile Ala Pro Lys His Ala Ile Leu 130 135 140 Ala Thr Asn Thr Ser Ser Ile Ser Ile Thr Lys Ile Ala Ala Ala Thr 145 150 155 160 Ser Ala Asp Pro Thr Asp Leu Gln Ala Ser Ser Arg Val Ile Ser Thr 165 170 175 His Phe Met Asn Pro Val Pro Ile Gln Lys Gly Val Glu Ile Ile Arg 180 185 190 Gly Leu Gln Thr Ser Glu Glu Thr Met Asp Thr Ala Ile Ala Phe Val 195 200 205 Gln Arg Met Gly Lys Val Ala Ser Val Ser Ala Asp Thr Pro Gly Phe 210 215 220 Leu Ala Asn Arg Ile Leu Met Pro Tyr Ile Asn Glu Ala Val Ile Cys 225 230 235 240 Leu Glu Thr Gly Val Gly Gln Arg Glu Asp Ile Asp Asn Ile Met Lys 245 250 255 Thr Gly Thr Asn Val Pro Met Gly Pro Leu Val Leu Ala Asp Phe Ile 260 265 270 Gly Leu Asp Thr Cys Leu Ala Ile Met Asn Val Leu His Gln Asp Thr 275 280 285 Gly Asp Ser Lys Tyr Arg Pro Ala Gly Leu Leu Arg Arg Met Val Asp 290 295 300 Ala Gly Trp Leu Gly Lys Lys Ser Gly Lys Gly Phe Tyr Asp Tyr 305 310 315 17335PRTPenicillium chrysogenum 17Met Ala Thr Glu Tyr Pro His Arg Ile Ala Leu Leu Gly Leu Gly Thr 1 5 10 15 Ile Gly Leu Ser Met Leu Ala Met His Leu Arg Arg Pro Asp Thr Ser 20 25 30 Ile Thr Val Tyr Asp Pro Arg Pro Asn Tyr Glu Ser Gln Ile Arg Ser 35

40 45 Thr Leu Pro Ser Leu Leu Asp Cys Pro Glu Ser Thr Thr Leu Ile Asp 50 55 60 Asp Leu Leu Arg Thr Ser Arg Leu Lys Leu Ala Ser Thr Val Ala Glu 65 70 75 80 Ala Ile Gln Asn Ala Asn Ile Ile Gln Glu Gln Ser Pro Glu Val Thr 85 90 95 Ala Ser Lys Gln Ala Leu Trp Lys Glu Val Ala Gly Leu Thr Gly Pro 100 105 110 Asp Val His Leu Trp Ser Ser Ser Ser Gly Ile Ser Ala Ser Val Gln 115 120 125 Ala Ser Gly Cys Glu Ala Ala Asp Arg Val Ala Glu Arg Leu Leu Val 130 135 140 Ala His Pro Phe Asn Pro Pro His Leu Met Pro Leu Ile Glu Ile Val 145 150 155 160 Pro Gly Pro Glu Thr Asn Pro Glu Arg Val Glu Phe Val Arg Lys Tyr 165 170 175 Phe Gly Asp Val Pro Gly Pro Arg Ala Ser Gly Gly Asp Gln Ser Ala 180 185 190 Ser Gln His Tyr Arg Pro Ile Thr Leu His Lys Glu Ile Pro Gly Phe 195 200 205 Val Gly Asn Arg Leu Ala Phe Ala Leu Leu Arg Glu Ala Cys Tyr Leu 210 215 220 Val Gly Glu Gly Val Val Ser Ala Lys Asp Leu Asp Ser Leu Val Thr 225 230 235 240 Ala Ser Leu Gly Pro Arg Trp Ala Gly Ser Gly Val Phe Glu Ser Tyr 245 250 255 His Ala Gly Gly Gly Glu Gly Gly Ile Gly Ala Phe Leu Gln Lys Leu 260 265 270 Thr Pro Thr Ile Gln Asp Val Trp Gly Glu Leu Gly Gln Ile Asp Ile 275 280 285 Gln Gly Glu Gln Thr Trp Lys Asp Val Val Val Lys Gln Thr Glu Asp 290 295 300 Ala Tyr Gly Pro Tyr Thr Pro Glu Thr Arg Lys Lys Lys Glu Glu Met 305 310 315 320 Leu Arg Asp Val Val Glu Leu Gln Lys Lys Lys Trp Gly Glu Leu 325 330 335 18505PRTAcinetobacter sp. 18Met Thr His Pro Ile Lys Lys Ile Ala Ile Ile Gly Val Gly Val Met 1 5 10 15 Gly Ser Gly Ile Ala Gln Ile Ala Ala Gln Ser Gly His Ile Thr Tyr 20 25 30 Leu Tyr Asp Ala Lys Ala Gly Ala Ala Gln Gln Ala Lys Gln Gln Leu 35 40 45 Ala Ile Thr Phe Gln Lys Leu Leu Asp Lys Asn Lys Ile Thr Thr Glu 50 55 60 Tyr Ala Asp Ala Ala Asn Ala Asn Leu Leu Ile Ala Asn Glu Leu His 65 70 75 80 Asp Leu Lys Asp Cys Asp Leu Ile Val Glu Ala Ile Val Glu Arg Leu 85 90 95 Asp Ile Lys Gln Ser Leu Met Ser Gln Leu Glu Ala Ile Val Pro Glu 100 105 110 Thr Thr Ile Leu Ala Ser Asn Thr Ser Ser Leu Ser Ile Thr Ala Ile 115 120 125 Ala Ser Asn Cys Lys His Pro Glu Arg Val Ala Gly Tyr His Phe Phe 130 135 140 Asn Pro Val Pro Leu Met Lys Val Val Glu Val Ile Gln Gly Leu Lys 145 150 155 160 Thr Asp Pro Lys His Ile Glu Thr Leu Asn Gln Leu Ser Arg Val Leu 165 170 175 Gly His Arg Pro Val Val Ala Lys Asp Thr Pro Gly Phe Ile Ile Asn 180 185 190 His Ala Gly Arg Ala Tyr Gly Thr Glu Ala Leu Lys Ile Leu Asn Glu 195 200 205 Asn Val Thr Asp Ile Ser Glu Ile Asp Arg Ile Leu Arg Asp Gly Val 210 215 220 Gly Phe Arg Met Gly Pro Phe Glu Leu Met Asp Leu Thr Gly Leu Asp 225 230 235 240 Val Ser His Pro Val Met Glu Ser Ile Tyr His Gln Tyr Tyr Glu Glu 245 250 255 Ala Arg Tyr Arg Pro Asn Ser Leu Thr Lys Gln Met Leu Glu Ala Lys 260 265 270 Gln Leu Gly Arg Lys Val Gly Gln Gly Phe Tyr Asp Tyr Arg Thr Gly 275 280 285 Ser Lys Thr Gly Glu Thr Ser Ala Lys Val Ala Glu Arg Leu Thr Leu 290 295 300 Tyr Pro Lys Val Trp Ile Ala Ala Asp Phe Glu Asp Asp Lys Gln Leu 305 310 315 320 Leu Ile Asn Tyr Leu Thr Thr His Asn Ile Gln Leu Asp Val Gly Ala 325 330 335 Lys Pro Gln Ala Asp Ser Leu Cys Leu Leu Ala Cys Tyr Gly Glu Asp 340 345 350 Thr Thr His Ala Ala Leu Arg Leu Asn Val Asn Pro Ala His Ser Val 355 360 365 Ala Ile Asp Met Leu Tyr Gly Ile Glu Lys His Arg Thr Leu Met Pro 370 375 380 Ser Leu Ile Thr Glu Val Thr Tyr Ser His Ala Ala His Ser Ile Phe 385 390 395 400 Asn Leu Asp Gly Ala Met Val Ser Thr Ile Gly Glu Ser Ile Gly Phe 405 410 415 Val Ala Gln Arg Ile Leu Ala Met Val Ile Asn Leu Gly Cys Asp Ile 420 425 430 Ala Gln Gln Ala Ile Ala Ser Val Asp Asp Ile Asn Ala Ala Val Arg 435 440 445 Leu Gly Leu Gly Tyr Pro Phe Gly Pro Ile Glu Trp Gly Asp Glu Ile 450 455 460 Gly Ser Asn Lys Ile Leu Leu Ile Leu Asn Arg Ile Thr Ala Leu Thr 465 470 475 480 Ser Asp Pro Arg Tyr Arg Pro Ser Pro Trp Leu Gln Arg Arg Val Ala 485 490 495 Leu Asn Leu Pro Leu Thr Phe Thr Thr 500 505 19282PRTClostridium kluyveri 19Met Ser Ile Lys Ser Val Ala Val Leu Gly Ser Gly Thr Met Ser Arg 1 5 10 15 Gly Ile Val Gln Ala Phe Ala Glu Ala Gly Ile Asp Val Ile Ile Arg 20 25 30 Gly Arg Thr Glu Gly Ser Ile Gly Lys Gly Leu Ala Ala Val Lys Lys 35 40 45 Ala Tyr Asp Lys Lys Val Ser Lys Gly Lys Ile Ser Gln Glu Asp Ala 50 55 60 Asp Lys Ile Val Gly Arg Val Ser Thr Thr Thr Glu Leu Glu Lys Leu 65 70 75 80 Ala Asp Cys Asp Leu Ile Ile Glu Ala Ala Ser Glu Asp Met Asn Ile 85 90 95 Lys Lys Asp Tyr Phe Gly Lys Leu Glu Glu Ile Cys Lys Pro Glu Thr 100 105 110 Ile Phe Ala Thr Asn Thr Ser Ser Leu Ser Ile Thr Glu Val Ala Thr 115 120 125 Ala Thr Lys Arg Pro Asp Lys Phe Ile Gly Met His Phe Phe Asn Pro 130 135 140 Ala Asn Val Met Lys Leu Val Glu Ile Ile Arg Gly Met Asn Thr Ser 145 150 155 160 Gln Glu Thr Phe Asp Ile Ile Lys Glu Ala Ser Ile Lys Ile Gly Lys 165 170 175 Thr Pro Val Glu Val Ala Glu Ala Pro Gly Phe Val Val Asn Lys Ile 180 185 190 Leu Val Pro Met Ile Asn Glu Ala Val Gly Ile Leu Ala Glu Gly Ile 195 200 205 Ala Ser Ala Glu Asp Ile Asp Thr Ala Met Lys Leu Gly Ala Asn His 210 215 220 Pro Met Gly Pro Leu Ala Leu Gly Asp Leu Ile Gly Leu Asp Val Val 225 230 235 240 Leu Ala Val Met Asp Val Leu Tyr Ser Glu Thr Gly Asp Ser Lys Tyr 245 250 255 Arg Ala His Thr Leu Leu Arg Lys Tyr Val Arg Ala Gly Trp Leu Gly 260 265 270 Arg Lys Ser Gly Lys Gly Phe Phe Ala Tyr 275 280 20319PRTClostridium kluyveri 20Met Asp Ile Lys Asn Val Ala Val Leu Gly Thr Gly Thr Met Gly Asn 1 5 10 15 Gly Ile Val Gln Leu Cys Ala Glu Ser Gly Leu Asn Val Asn Met Phe 20 25 30 Gly Arg Thr Asp Ala Ser Leu Glu Arg Gly Phe Thr Ser Ile Lys Thr 35 40 45 Ser Leu Lys Asn Leu Glu Glu Lys Gly Lys Ile Lys Thr Asn Ile Ser 50 55 60 Lys Glu Ile Leu Lys Arg Ile Lys Gly Val Lys Thr Ile Glu Glu Ala 65 70 75 80 Val Glu Gly Val Asp Phe Val Ile Glu Cys Ile Ala Glu Asp Leu Glu 85 90 95 Leu Lys Gln Glu Val Phe Ser Lys Leu Asp Glu Ile Cys Ala Pro Glu 100 105 110 Val Ile Leu Ala Ser Asn Thr Ser Gly Leu Ser Pro Thr Asp Ile Ala 115 120 125 Ile Asn Thr Lys His Pro Glu Arg Val Val Ile Ala His Phe Trp Asn 130 135 140 Pro Pro Gln Phe Ile Pro Leu Val Glu Val Val Pro Gly Lys His Thr 145 150 155 160 Asp Ser Lys Thr Val Asp Ile Thr Met Asp Trp Ile Glu His Ile Gly 165 170 175 Lys Lys Gly Val Lys Met Arg Lys Glu Cys Leu Gly Phe Ile Gly Asn 180 185 190 Arg Leu Gln Leu Ala Leu Leu Arg Glu Ala Leu Tyr Ile Val Glu Gln 195 200 205 Gly Phe Ala Thr Ala Glu Glu Val Asp Lys Ala Ile Glu Tyr Gly His 210 215 220 Gly Arg Arg Leu Pro Val Thr Gly Pro Ile Cys Ser Ala Asp Leu Gly 225 230 235 240 Gly Leu Asp Ile Phe Asn Asn Ile Ser Ser Tyr Leu Phe Lys Asp Leu 245 250 255 Cys Asn Asp Thr Glu Pro Ser Lys Leu Leu Lys Ser Lys Val Asp Gly 260 265 270 Gly Asn Leu Gly Ser Lys Thr Gly Lys Gly Phe Tyr Asn Trp Thr Pro 275 280 285 Glu Phe Leu Gln Lys Lys Gln Asn Glu Arg Ile Gln Leu Leu Met Asp 290 295 300 Phe Leu Glu Lys Asp Lys Asn Asp Lys Ser Ile Glu Arg Asn Ile 305 310 315 21475PRTEscherichia coli 21Met Met Ile Asn Val Gln Thr Val Ala Val Ile Gly Ser Gly Thr Met 1 5 10 15 Gly Ala Gly Ile Ala Glu Val Ala Ala Ser His Gly His Gln Val Leu 20 25 30 Leu Tyr Asp Ile Ser Ala Glu Ala Leu Thr Arg Ala Ile Asp Gly Ile 35 40 45 His Ala Arg Leu Asn Ser Arg Val Thr Arg Gly Lys Leu Thr Ala Glu 50 55 60 Thr Cys Glu Arg Thr Leu Lys Arg Leu Ile Pro Val Thr Asp Ile His 65 70 75 80 Ala Leu Ala Ala Ala Asp Leu Val Ile Glu Ala Ala Ser Glu Arg Leu 85 90 95 Glu Val Lys Lys Ala Leu Phe Ala Gln Leu Ala Glu Val Cys Pro Pro 100 105 110 Gln Thr Leu Leu Thr Thr Asn Thr Ser Ser Ile Ser Ile Thr Ala Ile 115 120 125 Ala Ala Glu Ile Lys Asn Pro Glu Arg Val Ala Gly Leu His Phe Phe 130 135 140 Asn Pro Ala Pro Val Met Lys Leu Val Glu Val Val Ser Gly Leu Ala 145 150 155 160 Thr Ala Ala Glu Val Val Glu Gln Leu Cys Glu Leu Thr Leu Ser Trp 165 170 175 Gly Lys Gln Pro Val Arg Cys His Ser Thr Pro Gly Phe Ile Val Asn 180 185 190 Arg Val Ala Arg Pro Tyr Tyr Ser Glu Ala Trp Arg Ala Leu Glu Glu 195 200 205 Gln Val Ala Ala Pro Glu Val Ile Asp Ala Ala Leu Arg Asp Gly Ala 210 215 220 Gly Phe Pro Met Gly Pro Leu Glu Leu Thr Asp Leu Ile Gly Gln Asp 225 230 235 240 Val Asn Phe Ala Val Thr Cys Ser Val Phe Asn Ala Phe Trp Gln Glu 245 250 255 Arg Arg Phe Leu Pro Ser Leu Val Gln Gln Glu Leu Val Ile Gly Gly 260 265 270 Arg Leu Gly Lys Lys Ser Gly Leu Gly Val Tyr Asp Trp Arg Ala Glu 275 280 285 Arg Glu Ala Val Val Gly Leu Glu Ala Val Ser Asp Ser Phe Ser Pro 290 295 300 Met Lys Val Glu Lys Lys Ser Asp Gly Val Thr Glu Ile Asp Asp Val 305 310 315 320 Leu Leu Ile Glu Thr Gln Gly Glu Thr Ala Gln Ala Leu Ala Ile Arg 325 330 335 Leu Ala Arg Pro Val Val Val Ile Asp Lys Met Ala Gly Lys Val Val 340 345 350 Thr Ile Ala Ala Ala Ala Val Asn Pro Asp Ser Ala Thr Arg Lys Ala 355 360 365 Ile Tyr Tyr Leu Gln Gln Gln Gly Lys Thr Val Leu Gln Ile Ala Asp 370 375 380 Tyr Pro Gly Met Leu Ile Trp Arg Thr Val Ala Met Ile Ile Asn Glu 385 390 395 400 Ala Leu Asp Ala Leu Gln Lys Gly Val Ala Ser Glu Gln Asp Ile Asp 405 410 415 Thr Ala Met Arg Leu Gly Val Asn Tyr Pro Tyr Gly Pro Leu Ala Trp 420 425 430 Gly Ala Gln Leu Gly Trp Gln Arg Ile Leu Arg Leu Leu Glu Asn Leu 435 440 445 Gln His His Tyr Gly Glu Glu Arg Tyr Arg Pro Cys Ser Leu Leu Arg 450 455 460 Gln Arg Ala Leu Leu Glu Ser Gly Tyr Glu Ser 465 470 475 22320PRTEuglena gracilis 22Met Met Ser Arg Asn Val Phe Thr Cys Cys Arg Ala Ile Arg Thr Tyr 1 5 10 15 Ala Thr Ala Pro Gly Leu Ser Thr Val Gly Val Val Gly Met Gly Ala 20 25 30 Met Gly His Gly Ile Ala Gln Met Thr Ala Ala Ala Gly Tyr Lys Val 35 40 45 Val Ala Val Asp Ile Asp Ala Asn Met Leu Ser Lys Gly Ile Lys Ala 50 55 60 Val Glu Asp Ser Leu Ser Lys Val Ala Ala Lys Ala Val Lys Asp Gly 65 70 75 80 Lys Ala Asp Lys Ala Thr Ala Glu Lys Asn Ala Ala Asp Val Arg Ser 85 90 95 Arg Ile Thr Thr Ser Gly Asp Ile Gly Ala Leu Ser Ser Cys Asp Leu 100 105 110 Val Ile Glu Ser Ile Ile Glu Asp Leu Asn Ile Lys Lys Lys Phe Phe 115 120 125 Ala Asp Leu Gly Lys Val Ala Gly Ala Asn Ala Ile Leu Ala Ser Asn 130 135 140 Thr Ser Ser Phe Pro Ile Thr Gln Leu Gly Glu Ala Ser Gly Arg Thr 145 150 155 160 Ser Asn Phe Leu Gly Leu His Phe Phe Asn Pro Val Gln Met Met Lys 165 170 175 Leu Val Glu Val Ile Lys Thr Lys Asp Thr Lys Glu Asp Val Tyr Lys 180 185 190 Leu Gly Phe Ala Phe Ser Lys Ser Ile Gly Lys Glu Pro Val Ala Cys 195 200 205 Gly Asp Thr Pro Gly Phe Ile Val Asn Arg Leu Leu Val Pro Phe Leu 210 215 220 Ala Gln Gly Leu Leu Met Leu Asp Arg Gly Val Ala Ser Val Gln Asp 225 230 235 240 Ile Asp Val Ala Met Met Tyr Gly Ala Gly Met Pro Met Gly Pro Leu 245 250 255 Thr Leu Ala Asp Tyr Val Gly Leu Asp Val Cys Met His Ile Leu Glu 260 265 270 Gly Trp Thr Ser Gln Tyr Pro Asn Glu Pro Ala Phe Val Ile Pro Gln 275 280 285 Pro Leu Lys Ala Lys Val Ala Ala Gly Lys Leu Gly Arg Lys Thr Gly 290 295 300 Glu Gly Phe Trp Lys Trp Glu Gly Asp Lys Pro Val Ala Pro Ala Ala 305 310 315 320 23505PRTPseudomonas putida 23Met Ala Ala Leu Ala Ser Asn Val Gln Val Ala Val Ile Gly Ala Gly 1 5 10 15 Ala Met Gly Ala Gly Ile Ala Gln Val Ala Ala Gln Ala Gly His Pro 20 25 30 Val Lys Leu Tyr Asp Asn Arg Pro Gly Ala Ala Ala Gln Ala Val Thr 35 40 45 Gly Ile Asp Arg Gln Leu Ala Arg Leu Val Asp Lys Gly Lys Leu Leu 50 55 60 Ala Ala Glu Arg Glu Thr Ile Asn Ala Arg Leu Cys Pro Val Asp Thr 65 70 75 80 Leu Glu Ala Leu Ala Asp Ala Gly Leu Val Ile Glu Ala Ile Val Glu 85

90 95 Asn Leu Gln Val Lys Gln Ala Leu Phe Ser Gln Leu Glu Thr Leu Cys 100 105 110 Ala Ala Asp Cys Ile Leu Ala Ser Asn Thr Ser Ser Leu Ser Ile Thr 115 120 125 Ser Leu Ala Ala Gly Leu Glu Arg Pro Gln His Val Val Gly Met His 130 135 140 Phe Phe Asn Pro Ala Pro Leu Met Ala Leu Val Glu Val Val Ser Gly 145 150 155 160 Leu Ala Thr Asp Pro Ala Val Ala Ala Cys Ile Tyr Ala Thr Ala Gln 165 170 175 Ala Trp Gly Lys Gln Pro Val His Ala Arg Ser Thr Pro Gly Phe Ile 180 185 190 Val Asn Arg Val Ala Arg Pro Phe Tyr Ala Glu Ser Leu Arg Leu Leu 195 200 205 Gln Glu Gly Ala Ala Asp Cys Ala Ser Leu Asp Ala Leu Met Arg Asp 210 215 220 Ser Gly Gly Phe Arg Met Gly Ala Phe Glu Leu Thr Asp Leu Ile Gly 225 230 235 240 His Asp Val Asn Tyr Ala Val Thr Cys Ser Val Phe Asp Ala Phe Tyr 245 250 255 Gly Asp Phe Arg Phe Gln Pro Ser Leu Val Gln Lys Glu Leu Val Asp 260 265 270 Ala Gly His Leu Gly Arg Lys Thr Gly Gln Gly Phe Tyr Arg Tyr Ala 275 280 285 Glu Gly Val Glu Arg Pro Gln Pro Ala Glu Leu His Ser Ser Ala Cys 290 295 300 Ala Glu Ala Cys Val Val Glu Gly Asn Leu Gly Val Met Gln Pro Leu 305 310 315 320 Val Glu Arg Leu Arg Gln Ser Gly Ile Ala Val Thr Gln Arg Ala Gly 325 330 335 Ser Gly Leu Ile Gln Val Gly Asp Ala Thr Leu Ala Leu Ser Asp Gly 340 345 350 Arg Leu Ala Ser Gln Arg Ala Arg Glu Asp Gly Leu Arg Asn Leu Val 355 360 365 Leu Leu Asp Leu Ala Leu Asp Tyr Ser Ser Ala Thr Arg Ile Ala Ile 370 375 380 Ser Trp Ser Ala Asp Thr Ser Asp Ser Ala Arg Asp Gln Ala Val Ala 385 390 395 400 Leu Leu Gln Arg Ala Gly Leu Lys Val Thr Gly Val Ala Asp Leu Pro 405 410 415 Gly Leu Val Val Leu Arg Thr Val Ala Met Leu Ala Asn Glu Ala Ala 420 425 430 Asp Ala Val Leu Gln Gly Val Gly Ser Ala Ala Asp Ile Asp Leu Ala 435 440 445 Met Arg Ala Gly Val Asn Tyr Pro Cys Gly Pro Leu Ala Trp Ala Ala 450 455 460 Asn Ile Gly Ile Ala His Thr Leu Arg Val Leu Asp Asn Leu Gln Cys 465 470 475 480 Ser Tyr Gly Glu Ser Arg Tyr Arg Pro Ser Leu Leu Leu Arg Arg Cys 485 490 495 Glu Ala Lys Gly Gly Thr Leu His Asp 500 505 24246PRTCupriavidus necator 24Met Thr Gln Arg Ile Ala Tyr Val Thr Gly Gly Met Gly Gly Ile Gly 1 5 10 15 Thr Ala Ile Cys Gln Arg Leu Ala Lys Asp Gly Phe Arg Val Val Ala 20 25 30 Gly Cys Gly Pro Asn Ser Pro Arg Arg Glu Lys Trp Leu Glu Gln Gln 35 40 45 Lys Ala Leu Gly Phe Asp Phe Ile Ala Ser Glu Gly Asn Val Ala Asp 50 55 60 Trp Asp Ser Thr Lys Thr Ala Phe Asp Lys Val Lys Ser Glu Val Gly 65 70 75 80 Glu Val Asp Val Leu Ile Asn Asn Ala Gly Ile Thr Arg Asp Val Val 85 90 95 Phe Arg Lys Met Thr Arg Ala Asp Trp Asp Ala Val Ile Asp Thr Asn 100 105 110 Leu Thr Ser Leu Phe Asn Val Thr Lys Gln Val Ile Asp Gly Met Ala 115 120 125 Asp Arg Gly Trp Gly Arg Ile Val Asn Ile Ser Ser Val Asn Gly Gln 130 135 140 Lys Gly Gln Phe Gly Gln Thr Asn Tyr Ser Thr Ala Lys Ala Gly Leu 145 150 155 160 His Gly Phe Thr Met Ala Leu Ala Gln Glu Val Ala Thr Lys Gly Val 165 170 175 Thr Val Asn Thr Val Ser Pro Gly Tyr Ile Ala Thr Asp Met Val Lys 180 185 190 Ala Ile Arg Gln Asp Val Leu Asp Lys Ile Val Ala Thr Ile Pro Val 195 200 205 Lys Arg Leu Gly Leu Pro Glu Glu Ile Ala Ser Ile Cys Ala Trp Leu 210 215 220 Ser Ser Glu Glu Ser Gly Phe Ser Thr Gly Ala Asp Phe Ser Leu Asn 225 230 235 240 Gly Gly Leu His Met Gly 245 25284PRTRhodococcus sp. 25Met Thr Ser Thr Ala Pro Lys Asn Val Gly Val Val Gly Gly Gly Arg 1 5 10 15 Met Gly Ala Gly Ile Ala Gln Val Phe Ala Thr Leu Gly Ser Thr Val 20 25 30 Ile Ile Ala Glu Ser Gly Asp Arg Glu Ala Ala Val Lys Arg Val Ser 35 40 45 Asp Gly Leu Asp Arg Ala His Glu Arg Gly Lys Leu Gly Asp Val Asp 50 55 60 Pro Ala Thr Ile Leu Gly Arg Val Ser Thr Val Ala Ala Pro Asp Ala 65 70 75 80 Leu Pro Pro Ala Leu Asp Leu Val Val Glu Ala Val Pro Glu Leu Val 85 90 95 Asp Leu Lys Leu Ser Val Leu Ser Leu Val Glu Lys Thr Val Ser Pro 100 105 110 Thr Thr Val Ile Ala Ser Asn Thr Ser Ser Ile Ser Ile Ala Glu Leu 115 120 125 Gly Ser Ala Leu Gly Asp Pro Ala Arg Leu Ile Gly Met His Phe Phe 130 135 140 Asn Pro Val Pro Ala Ser Ser Leu Val Glu Ile Val Arg Ala Pro Ala 145 150 155 160 Thr Asp Ala Gly Val Val Glu Lys Val Arg Glu Trp Val Ala Gln Leu 165 170 175 Gly Lys Thr Glu Val Leu Val Asn Asp Ser Pro Gly Phe Ala Thr Ser 180 185 190 Arg Leu Gly Val Cys Leu Gly Leu Glu Ala Ile Arg Met Leu Glu Glu 195 200 205 Gly Val Ala Asp Ala Glu Ser Ile Asp Arg Ala Met Glu Leu Gly Tyr 210 215 220 Arg His Pro Met Gly Pro Leu Arg Ser Thr Asp Leu Val Gly Leu Asp 225 230 235 240 Val Arg Leu Ala Ile Ala Glu His Leu Ala Lys Thr Leu Gly Asp Arg 245 250 255 Phe Ala Pro Pro Ala Leu Leu Arg Glu Lys Val Ala Lys Gly Glu Leu 260 265 270 Gly Arg Lys Thr Gly Gln Gly Phe Phe Thr Trp Ser 275 280 26699PRTRhodopseudomonas palustris 26Met Ser Glu Val Val Thr Arg Ala Thr Gln Asp Gln Val Ala Ile Val 1 5 10 15 Thr Val Asp Ser Pro Pro Val Asn Ala Leu Ser Ala Ala Val Arg Arg 20 25 30 Gly Ile Leu Glu Asn Val Asn Ala Ala Val Ala Asp Pro Ala Val Gln 35 40 45 Ala Ile Val Leu Val Cys Ala Gly Arg Thr Phe Ile Ala Gly Ala Asp 50 55 60 Ile Thr Glu Phe Gly Lys Pro Pro Gln Pro Pro Ala Leu Asn Asp Val 65 70 75 80 Ile Ala Ala Leu Glu Asn Ser Pro Lys Pro Thr Ile Ala Ala Ile His 85 90 95 Gly Thr Ala Leu Gly Gly Gly Leu Glu Val Ala Leu Gly Cys His Phe 100 105 110 Arg Val Ala Val Lys Glu Ala Lys Leu Gly Leu Pro Glu Val Lys Leu 115 120 125 Gly Leu Leu Pro Gly Ala Gly Gly Thr Gln Arg Leu Pro Arg Ala Val 130 135 140 Gly Pro Glu Leu Ala Val Gln Met Ile Val Gly Gly Ser Pro Ile Gly 145 150 155 160 Ala Ala Glu Ala Leu Lys His Gly Leu Val Glu Glu Val Val Glu Asn 165 170 175 Leu Val Ala Gly Ala Val Ala Phe Ala Lys Lys Val Leu Ala Glu Lys 180 185 190 Arg Pro Leu Arg Arg Leu Arg Asp Asp Asp Ser Lys Leu Ala Ala Ala 195 200 205 Lys Ala Asp Arg Ser Ile Phe Thr Asn Ala Val Ala Ala Met Thr Lys 210 215 220 Lys Ala Arg Gly Leu Glu Ala Pro Phe Ala Cys Ala Asp Ala Ile Gly 225 230 235 240 Ala Ala Ile Asp Leu Pro Phe Glu Glu Gly Leu Lys Lys Glu Arg Glu 245 250 255 Gly Phe Met Lys Leu Val Val Ser Asp Gln Ser Lys Ala Gln Arg Tyr 260 265 270 Ala Phe Phe Ala Glu Arg Glu Ala Ala Lys Val Asp Gly Val Pro Asp 275 280 285 Gly Thr Lys Pro Arg Pro Val Ser Arg Val Ala Ile Ile Gly Ala Gly 290 295 300 Thr Met Gly Gly Gly Ile Ala Met Ser Phe Ala Asn Ala Gly Ile Pro 305 310 315 320 Val Thr Leu Ile Glu Thr Gly Glu Glu Gln Leu Lys Arg Gly Leu Gly 325 330 335 Ile Met Gln Lys Asn Trp Glu Ala Thr Ala Ala Arg Gly Gly Leu Pro 340 345 350 Pro Asp Ala Pro Ala Lys Arg Met Ala Leu Ile Thr Gly Leu Val Gly 355 360 365 Leu Glu Asn Val Lys Asp Ala Asp Leu Ile Ile Glu Ala Val Phe Glu 370 375 380 Thr Met Ala Val Lys Lys Glu Val Phe Thr Ala Val Asp Ala His Ala 385 390 395 400 Lys Pro Gly Ala Val Leu Ala Ser Asn Thr Ser Tyr Leu Ser Ile Asp 405 410 415 Glu Ile Ala Ala Thr Thr Lys Arg Pro Gln Asp Val Leu Gly Met His 420 425 430 Phe Phe Ser Pro Ala Asn Val Met Lys Leu Cys Glu Ile Val Arg Gly 435 440 445 Ala Lys Thr Ala Pro Asp Ala Leu Leu Thr Ala Val Ser Ile Ala Lys 450 455 460 Lys Ile Ala Lys Val Pro Val Val Val Gly Val Cys Asp Gly Phe Val 465 470 475 480 Gly Asn Arg Met Leu Ala Ala Arg Ser Lys Gln Ser Glu Lys Leu Leu 485 490 495 Phe Glu Gly Ala Leu Pro Gln Gln Val Asp Ala Val Val Thr Lys Phe 500 505 510 Gly Met Pro Met Gly Pro Phe Ala Met Gly Asp Leu Ala Gly Leu Asp 515 520 525 Ile Gly Trp Arg Ser Arg Lys Asp Arg Gly Ile Lys Ser Glu Ile Ala 530 535 540 Asp Ala Leu Cys Glu Ala Gly Arg Phe Gly Gln Lys Thr Gly Lys Gly 545 550 555 560 Tyr Tyr Lys Tyr Glu Gln Gly Ser Arg Ala Pro Met Pro Asp Pro Glu 565 570 575 Val Glu Thr Leu Ile Asn Asp Thr Leu Ala Lys Leu Gly Leu Lys Arg 580 585 590 Arg Asp Ile Thr Asp Glu Glu Ile Leu Glu Arg Met Val Tyr Pro Met 595 600 605 Ile Asn Glu Gly Ala Arg Ile Leu Glu Glu Lys Ile Ala Ala Arg Pro 610 615 620 Ser Asp Ile Asp Val Val Trp Leu Tyr Gly Tyr Gly Trp Pro Ile Tyr 625 630 635 640 Arg Gly Gly Pro Met His Tyr Ala Asp Ser Val Gly Leu Lys His Ile 645 650 655 Ala Glu Arg Leu Ser Ala Tyr Ala Lys Ala Thr Asn Asp Pro Ser Leu 660 665 670 Glu Pro Ala Pro Leu Leu Ala Arg Leu Ala Ala Glu Gly Lys Thr Phe 675 680 685 Ala Ser Leu Thr Gln Pro Ser Lys Ala Ala Ala 690 695 27278PRTPenicillium chrysogenum 27Met Ser Leu Leu Thr Thr Tyr Thr Thr Gln Asn Thr Thr Lys Ile Ala 1 5 10 15 His Leu Thr Ile Ser His Ala Gln Lys Leu Asn Ser Leu Thr Thr Pro 20 25 30 Leu Leu Thr Ser Leu Thr Gln Thr Leu Ser Lys Leu Ser Asn Thr Asn 35 40 45 Leu His Ala Ile Thr Leu Thr Gly Ala Gly Gln Lys Ser Phe Ile Gly 50 55 60 Gly Ala Asp Leu Asn Glu Leu Ser Thr Leu Arg Asn Ala Pro Thr Ala 65 70 75 80 Arg Lys Phe Ile Thr Ser Val His Glu Thr Cys Thr Ala Ile Arg Thr 85 90 95 Cys Pro Val Pro Val Ile Ala Arg Ile Asn Gly Phe Ala Leu Gly Ala 100 105 110 Gly Leu Glu Ile Ala Ala Ala Cys Asp Leu Arg Val Ala Ala Lys Gly 115 120 125 Ala Val Phe Gly Met Pro Glu Val Arg Leu Gly Ile Pro Ser Val Val 130 135 140 Glu Ala Ala Leu Leu Pro Gly Leu Ile Gly Trp Gly Arg Thr Arg Gln 145 150 155 160 Leu Leu Leu Leu Gly Gly Met Ile Ser Ala Ser Glu Ala Leu Arg Trp 165 170 175 Gly Leu Val Glu Arg Val Val Glu Asp Glu Glu Leu Asp Leu Ala Val 180 185 190 Ala Glu Trp Thr Ser Glu Ile Gly Arg Asn Gly Pro Leu Ala Val Arg 195 200 205 Arg Gln Lys Ala Leu Ile Ser Arg Trp Glu Glu Leu Ser Leu Ala Gly 210 215 220 Gly Ile Glu Ala Gly Ile Glu Ala Phe Gly Glu Cys Phe Asp Gly Asp 225 230 235 240 Cys Gly Thr Glu Pro Gly Arg Met Ile Gly Glu Phe Phe Arg Glu Lys 245 250 255 Glu Arg Ser Lys Ala Arg Ile Glu Ala Arg Asn Lys Val Val Ala Gly 260 265 270 Ser Lys Gly Glu Glu Gly 275 28244PRTPenicillium chrysogenum 28Met Thr Glu Ile Pro Thr Phe His Asn Leu Ser Leu Glu Arg His Gly 1 5 10 15 Asn Val Phe Val Leu Thr Met Gln Lys Pro Pro Glu Asn Arg Leu Asn 20 25 30 Ser Ser Tyr Cys Gln Glu Met Ile Arg Ala Tyr Arg Ser Val Glu Arg 35 40 45 Ile Leu Gly Ser Asp Ser Glu Gly Ala Val Ile Thr Arg Gly Asn Asp 50 55 60 Ala Lys Phe Trp Cys Thr Gly Leu Glu Leu Asp Glu Ser Asp Ser Asn 65 70 75 80 Pro Phe Ala Asn Thr Asp Gly Phe Tyr Pro Leu Ile His Thr Ile Leu 85 90 95 Asp Phe Pro Phe Pro Thr Val Ala Leu Leu Thr Gly His Thr Phe Gly 100 105 110 Gly Ala Cys Pro Leu Ala Leu Ala His Asp Tyr Arg Ile Met Asn Ser 115 120 125 Arg Arg Gly Phe Ile Ser Met Pro Pro Val Asn Leu Gly Leu His Phe 130 135 140 Asp Gly Ile Gly Ser Leu Pro Arg Leu Lys Leu Arg Pro Gln Val Ala 145 150 155 160 Arg Lys Met Leu Leu Glu Ala His Arg Trp Thr Gly Pro Glu Ala Leu 165 170 175 Glu Asp Gly Ile Val Asp Ala Val Ala Glu Pro Glu Asp Met Leu Asn 180 185 190 Val Ala Leu Glu Leu Gly Ala Lys Trp Ala Pro Lys Ala Lys Met Gly 195 200 205 Val Tyr Ala Leu Leu Arg Gln Glu Leu Trp Gly Asp Ala Ile Lys Lys 210 215 220 Phe Gln Arg Ile Ser Tyr Val His Ser Arg Val Thr Ser Ala Pro Ala 225 230 235 240 Lys Val Lys Ile 29300PRTPenicillium chrysogenum 29Met Ala Pro Ser Asp Arg Leu Thr Gln Val Asn Glu His Leu Asn Tyr 1 5 10 15 Pro Ala Gly Leu Leu Ala Gly Gln Val Ala Ile Ile Thr Gly Ala Gly 20 25 30 Gln Gly Ile Gly Ala Glu Ala Ala Arg Leu Phe Ala Asn Glu Gly Ala 35 40 45 Lys Val Val Val Ala Asp Ile Asp Ser Lys Lys Ala Asn Ala Val Ala 50 55 60 Asp Ala Ile Asn Ser Ala Lys Ala Gly Arg Ala Leu Ala Val Val Gly 65 70 75 80 Asp Val Leu Asp Ser Asn Tyr Ile Thr Glu Leu Val Lys Lys Thr Ala 85 90 95 Glu Phe Gly Asn Gly Lys Ile His Ile Ile Val Asn Asn Ala Gly Phe 100 105 110 Thr Trp Asp Gly Val Ile His Lys Met

Thr Asp Lys Gln Trp Glu Thr 115 120 125 Met Leu Ala Val His Asn Thr Ala Pro Phe Gln Leu Val Arg Ala Ala 130 135 140 Ala Pro Tyr Phe Arg Val Lys Asp Gln Glu Pro Arg Val Val Ile Asn 145 150 155 160 Ile Ser Ser Thr Ser Gly Val His Gly Asn Ala Gly Gln Ala Asn Tyr 165 170 175 Ala Val Ala Lys Ala Gly Val Val Gly Leu Thr Arg Thr Ile Ala Lys 180 185 190 Glu Trp Gly Pro Ser Phe Gly Val Arg Ser Asn Thr Ile Ala Phe Gly 195 200 205 Phe Val Thr Thr Arg Leu Thr Ala Ala Lys Glu Glu Gly Ala Phe Ile 210 215 220 Thr Thr Pro Asp Gly Thr Lys Val Ala Leu Gly Ile Pro Gly Lys Gln 225 230 235 240 Leu Ala Thr Lys Lys Gly Ser Ala Asp Gln Glu Lys Lys Ala Ala Pro 245 250 255 Thr Tyr Pro Asp Ile Pro Leu Gly Arg Pro Ala Thr Pro Glu Glu Ala 260 265 270 Ala Arg Ala Val Leu Gly Val Ala Ser Pro Trp Phe Ser Tyr Val Asn 275 280 285 Gly Glu Thr Ile Arg Val Thr Gly Gly Arg Asn Met 290 295 300 30327PRTPenicillium chrysogenum 30Met Ser Ala Pro Gly Ala Gly His Glu Phe Pro Ala Gln Glu Val Ser 1 5 10 15 Trp Gln Lys Arg Asp Val Leu Leu Phe Ala Asn Ser Ile Gly Val Lys 20 25 30 Ala Asp Glu Leu His Phe Leu Tyr Glu Leu His Pro Asn Phe Ala Val 35 40 45 Phe Pro Thr Tyr Ser Leu Ile Leu Arg Met Ser Lys Asn Thr Ser Asp 50 55 60 Phe Arg Thr Ile Ala Leu Thr Pro Lys Pro Leu Ala Phe Lys Leu Thr 65 70 75 80 Asp Gln Glu Val Thr Asp Phe Tyr Ala Arg Gln Lys Ala Val His Ile 85 90 95 Pro Gly Val Pro Asp Leu Asp His Arg His Gly Val Asp Gly Gln Arg 100 105 110 Lys Ile Thr Ile Leu Lys Pro Leu Pro Thr Thr Ser Ala Gly Arg Lys 115 120 125 Phe Glu Leu Arg Asn Lys Val Ile Gly Val Tyr Asp Lys Gly Lys Pro 130 135 140 Gly Thr Val Ile Glu Thr Glu Gln Ser Ile Val Asp Lys Glu Ser Gly 145 150 155 160 Glu Val Tyr Ser Lys Val Val Ser Ser Gly Phe Leu Val Gly Gln Gly 165 170 175 Gly Trp Gly Gly Pro Lys Gly Pro Ser Thr Val Asn Tyr Ala Pro Pro 180 185 190 Glu Gly Arg Ala Pro Asp Ala Thr His Val Val Gln Ser Asn Ser Glu 195 200 205 Thr Ala His Leu Tyr Arg Leu Asn Gly Asp Tyr Asn Pro Leu His Ala 210 215 220 Thr Pro Glu Pro Gly Gln Lys Met Gly Phe Gly Gly Ile Ile Ile His 225 230 235 240 Gly Leu Phe Ser Trp Asn Ser Ala Ala His Gly Ile Leu Arg Glu Phe 245 250 255 Gly Gly Ser Asn Pro Ala Asn Met Lys Glu Phe Gln Ala Arg Phe Ala 260 265 270 Ser Pro Val Arg Pro Gly Asp Lys Leu Thr Thr Glu Ile Trp Arg Met 275 280 285 Gly Asn Ile Gln Asp Gly Tyr Glu Glu Ile Arg Phe Val Thr Lys Asn 290 295 300 Asp Lys Gly Arg Val Val Leu Ser Asn Gly Arg Cys Leu Leu Lys Val 305 310 315 320 Thr Gly Val Lys Ser Lys Leu 325 31901PRTPenicillium chrysogenum 31Met Ser Glu Leu Arg Phe Asp Asn Gln Thr Val Val Val Thr Gly Ala 1 5 10 15 Gly Gly Gly Leu Gly Lys Ala Tyr Ala Leu Phe Phe Ala Ser Arg Gly 20 25 30 Ala Asn Val Val Val Asn Asp Leu Gly Ala Ser His Lys Gly Glu Gly 35 40 45 Lys Ser Gly Lys Ala Ala Asp Val Val Val Glu Glu Ile Arg Ala Ala 50 55 60 Gly Gly Lys Ala Val Ala Asn Tyr Asp Ser Val Glu Asn Gly Asp Ala 65 70 75 80 Ile Ile Glu Thr Ala Ile Lys Ala Phe Gly Arg Ile Asp Ile Leu Leu 85 90 95 Asn Asn Ala Gly Ile Leu Arg Asp Ile Ser Phe Lys Asn Met Lys Asp 100 105 110 Ala Asp Trp Asp Leu Ile Asn Arg Val His Thr Tyr Gly Ala Tyr Lys 115 120 125 Cys Ala Arg Ala Ala Trp Pro His Phe Arg Lys Gln Lys Phe Gly Arg 130 135 140 Val Ile Asn Thr Ala Ser Ala Ala Gly Leu Phe Gly Ser Phe Gly Gln 145 150 155 160 Ala Asn Tyr Ser Ala Ala Lys Leu Gly Gln Val Gly Phe Thr Glu Thr 165 170 175 Leu Ala Lys Glu Gly Ala Lys Tyr Asn Ile Ile Ala Asn Val Ile Ala 180 185 190 Pro Ile Ala Ala Ser Arg Met Thr Ala Thr Val Met Pro Pro Asp Val 195 200 205 Leu Glu Asn Leu Lys Pro Asp Trp Val Val Pro Leu Val Ala Ala Leu 210 215 220 Val His Ser Ser Asn Thr Thr Glu Thr Gly Gly Ile Tyr Glu Val Gly 225 230 235 240 Gly Gly His Val Ala Lys Leu Arg Trp Glu Arg Ala Lys Gly Ala Leu 245 250 255 Leu Lys Thr Asp Asp Ser Leu Thr Pro Gly Ala Ile Ala Arg Lys Trp 260 265 270 Asn Asp Val Asn Asp Phe Ser Gln Pro Glu Tyr Pro Thr Gly Pro Ala 275 280 285 Asp Phe Met Ala Phe Leu Glu Asp Gly Leu Lys Thr Pro Ser Ala Gln 290 295 300 Pro Gly Gln Glu Pro Asp Phe Lys Gly Arg Val Ala Leu Val Thr Gly 305 310 315 320 Gly Gly Ala Gly Leu Gly Arg Ala Tyr Cys Leu Gln Phe Ala Lys Leu 325 330 335 Gly Ala Ser Val Val Val Asn Asp Leu Val Asp Pro Glu Pro Val Val 340 345 350 Gln Glu Ile Lys Lys Leu Gly Gly Lys Ala Val Gly Asn Lys Ala Ser 355 360 365 Cys Glu Asp Gly Asp Ala Val Val Lys Ser Ala Ile Asp Ala Phe Gly 370 375 380 Arg Ile Asp Ile Leu Val Asn Asn Ala Gly Ile Leu Arg Asp Lys Ala 385 390 395 400 Phe Thr Asn Met Asp Asp Asn Leu Trp Asn Ser Val Val Asn Val His 405 410 415 Leu Arg Gly Thr Tyr Lys Val Thr Lys Ala Ala Trp Pro Tyr Phe Leu 420 425 430 Lys Gln Lys Tyr Gly Arg Val Val Asn Thr Ala Ser Thr Ser Gly Ile 435 440 445 Tyr Gly Asn Phe Gly Gln Ala Asn Tyr Ala Ala Ala Lys Leu Gly Ile 450 455 460 Leu Gly Leu Ser Arg Thr Leu Ala Leu Glu Gly Ala Lys Tyr Asn Ile 465 470 475 480 Lys Val Asn Thr Ile Ala Pro Asn Ala Gly Thr Asn Met Thr Arg Thr 485 490 495 Ile Met Pro Glu Glu Met Val Gln Ala Phe Lys Pro Asp Tyr Val Ala 500 505 510 Pro Leu Val Val Leu Leu Cys Ser Asp Met Ala Pro Glu Pro Ser Thr 515 520 525 Lys Gly Leu Phe Glu Cys Gly Ser Gly Trp Phe Gly Arg Thr Arg Trp 530 535 540 Gln Arg Thr Gly Gly His Gly Phe Pro Val Asp Val Lys Leu Thr Pro 545 550 555 560 Glu Glu Val Val Arg Asn Trp Lys Gln Ile Ile Asn Phe Asp Asp Gly 565 570 575 Arg Ala Asp His Pro Glu Asp Gly Gln Ala Gly Ala Glu Lys Ile Met 580 585 590 Ala Asn Met Ser Asn Arg Val His Gly Asp Thr Ser Thr Glu Asn Glu 595 600 605 Thr Leu Lys Asn Ile Lys Lys Ala Lys Ala Leu Ser Ser Glu Gly Thr 610 615 620 Pro Phe Asn Tyr Glu Asp Arg Asp Val Ile Leu Tyr Asn Leu Ser Leu 625 630 635 640 Gly Ala Lys Arg Thr Asp Leu Pro Leu Val Tyr Glu Asn Asn Asp Gln 645 650 655 Phe Gln Ala Leu Pro Ser Tyr Gly Val Val Pro Trp Phe Asn Thr Ala 660 665 670 Thr Pro Trp Asn Met Asp Asp Leu Val Lys Asp Phe Ser Pro Met Met 675 680 685 Leu Leu His Gly Glu Gln Tyr Met Glu Val Arg Lys Phe Pro Ile Pro 690 695 700 Thr Thr Ala Asn Thr Leu Thr Tyr Pro Lys Leu Ile Asp Val Ile Asp 705 710 715 720 Lys Gly Asn Ala Ala Ile Val Val Ala Gly Tyr Thr Thr Lys Asp Ala 725 730 735 Lys Thr Gly Glu Asp Leu Phe Tyr Asn Glu Ser Ser Val Phe Ile Arg 740 745 750 Gly Ser Gly Gly Phe Gly Gly Ser Pro Lys Pro Thr Ala Val Arg Pro 755 760 765 Lys Ala Ala Thr Ala Ala Tyr Lys Ala Pro Gln Arg Gln Pro Asp Ala 770 775 780 Val Val Glu Glu Lys Thr Ser Glu Asp Gln Ala Ala Leu Tyr Arg Leu 785 790 795 800 Asn Gly Asp Arg Asn Pro Leu His Ile Asp Pro Glu Phe Ser Lys Val 805 810 815 Gly Gly Phe Lys Thr Pro Ile Leu His Gly Leu Cys Ser Leu Gly Val 820 825 830 Ser Ala Lys Ala Val Phe Ser Lys Tyr Gly Pro Tyr Lys Asn Leu Lys 835 840 845 Val Arg Phe Ala Gly Val Val Leu Pro Gly Gln Thr Leu Lys Thr Glu 850 855 860 Met Trp Lys Glu Gly Asn Thr Val Leu Phe Gln Ala Thr Val Val Glu 865 870 875 880 Thr Gly Lys Pro Ala Ile Thr Gly Ala Gly Ala Glu Leu Leu Glu Gly 885 890 895 Ala Lys Ala Lys Leu 900 32293PRTPenicillium chrysogenum 32Met Phe Ala Arg Gln Cys Thr Arg Leu Ala Thr Ser Arg Thr Ser Ala 1 5 10 15 Pro Leu Thr Ser Tyr Leu Ala Arg Val Arg Gly Tyr Ser Ser Ala Ala 20 25 30 Gly Ser Tyr Glu His Ile Leu Thr Ser Thr Pro Lys Pro Gly Val Gly 35 40 45 Leu Ile Thr Leu Asn Arg Pro Lys Ala Leu Asn Ala Leu Cys Ser Pro 50 55 60 Leu Phe Lys Glu Leu Asn Glu Ala Leu Ser Asn Tyr Asp Asn Asp Lys 65 70 75 80 Ser Ile Gly Ala Ile Ile Ile Thr Gly Ser Glu Lys Ala Phe Ala Ala 85 90 95 Gly Ala Asp Ile Lys Glu Met Ala Pro Leu Ser Phe Ser Ala Ala Tyr 100 105 110 Ser Asp Asn Phe Ile Ala Pro Trp Ser His Leu Ala Thr Ser Ile Arg 115 120 125 Thr Pro Val Ile Ala Ala Val Ser Gly Tyr Ala Leu Gly Gly Gly Cys 130 135 140 Glu Leu Ala Leu Met Cys Asp Ile Leu Tyr Cys Ser Glu Asn Ala Thr 145 150 155 160 Phe Gly Gln Pro Glu Ile Lys Leu Gly Thr Ile Pro Gly Ala Gly Gly 165 170 175 Ser Gln Arg Leu Thr Arg Ala Ile Gly Lys Ser Lys Ala Met Glu Leu 180 185 190 Ile Leu Thr Gly Lys Asn Phe Ser Gly Lys Glu Ala Gly Glu Trp Gly 195 200 205 Val Ala Ala Lys Val Val Pro Gly Gly Lys Glu Glu Leu Leu Glu Gln 210 215 220 Ala Tyr Lys Thr Ala Glu Thr Ile Ala Ser Tyr Ser Arg Val Ala Val 225 230 235 240 Val Ala Gly Lys Glu Val Val Asn Lys Ser Gln Glu Leu Ser Leu Lys 245 250 255 Glu Gly Val Glu Tyr Glu Arg Arg Leu Phe His Ala Leu Phe Gly Ser 260 265 270 Lys Asp Gln Lys Ile Gly Met Thr Ala Phe Ala Glu Lys Lys Lys Pro 275 280 285 Glu Trp Ser His Glu 290 33261PRTAcinetobacter sp. 33Met Ile Pro Asp Gln Asp Asn Phe Val Glu Ile Asp Phe Ser Ile Glu 1 5 10 15 Gln Ile Ala Ile Val Lys Ile Asn Arg Pro Ala Ser Lys Asn Ala Leu 20 25 30 Asn Thr Glu Val Arg Lys Gln Leu Ala Gln Ala Phe Thr Glu Leu Ser 35 40 45 Phe Asn Asp Gln Ile Asn Ala Ile Val Leu Thr Gly Gly Glu Asp Val 50 55 60 Phe Ala Ala Gly Ala Asp Leu Lys Glu Met Ala Thr Ala Ser Ser Thr 65 70 75 80 Asp Met Leu Leu Arg His Thr Glu Arg Tyr Trp Asn Ala Ile Ala Gln 85 90 95 Cys Pro Lys Pro Val Ile Ala Ala Val Asn Gly Tyr Ala Leu Gly Gly 100 105 110 Gly Cys Glu Leu Ala Met His Thr Asp Ile Ile Ile Ala Gly Lys Ser 115 120 125 Ala Thr Phe Gly Gln Pro Glu Ile Lys Val Gly Leu Met Pro Gly Ala 130 135 140 Gly Gly Thr Gln Arg Leu Phe Arg Ala Val Gly Lys Phe His Ala Met 145 150 155 160 Arg Met Ile Met Thr Gly Val Met Val Pro Ala Glu Glu Ala Tyr Leu 165 170 175 Ile Gly Leu Val Ser Gln Val Thr Glu Asp Ser Gln Thr Ile Pro Thr 180 185 190 Ala Ile Lys Met Ala Gln Ser Leu Ala Lys Met Pro Pro Ile Ala Leu 195 200 205 Gln Gln Ile Lys Glu Val Ala Leu Met Ser Glu Asp Val Pro Leu Asn 210 215 220 Ala Gly Leu Thr Leu Glu Arg Lys Ser Phe Gln Leu Leu Phe Ser Thr 225 230 235 240 Glu Asp Lys Asn Glu Gly Ile Asn Ala Phe Ile Glu Lys Arg Lys Pro 245 250 255 Ser Tyr His Gly Lys 260 34136PRTAeromonas salmonicida 34Met Asn Thr Leu Pro Leu Glu Ile Gly Gln Lys Ala Ser Leu Thr Lys 1 5 10 15 Arg Phe Gly Ala Ala Glu Val Glu Ala Phe Ala Gly Leu Ser Glu Asp 20 25 30 Phe Asn Pro Leu His Leu Asp Ser Ala Phe Ala Ala Thr Thr Pro Phe 35 40 45 Glu Arg Pro Ile Val His Gly Met Leu Leu Ala Ser Leu Phe Ser Gly 50 55 60 Leu Leu Gly Gln Gln Leu Pro Gly Lys Gly Thr Val Tyr Leu Gly Gln 65 70 75 80 Ser Leu Ser Phe Lys Gln Pro Val Phe Val Gly Asp Glu Val Thr Ala 85 90 95 Glu Val Glu Ile Ile Ala Met Arg Ser Asp Lys Pro Ile Ile Thr Leu 100 105 110 Ala Thr Arg Ile Leu Ala Ala Gly Gly Ala Leu Ala Leu Ala Val Thr 115 120 125 Gly Glu Ala Val Val Lys Val Gly 130 135 35259PRTClostridium kluyveri 35Met Glu Phe Lys Asn Ile Ile Leu Glu Lys Asp Gly Asn Val Ala Ser 1 5 10 15 Ile Thr Leu Asn Arg Pro Lys Ala Leu Asn Ala Leu Asn Ala Ala Thr 20 25 30 Leu Lys Glu Ile Asp Ala Ala Ile Asn Asp Ile Ala Glu Asp Asp Asn 35 40 45 Val Tyr Ala Val Ile Ile Thr Gly Ser Gly Lys Ala Phe Val Ala Gly 50 55 60 Ala Asp Ile Ala Glu Met Lys Asp Leu Thr Ala Val Glu Gly Arg Lys 65 70 75 80 Phe Ser Val Leu Gly Asn Lys Ile Phe Arg Lys Leu Glu Asn Leu Glu 85 90 95 Lys Pro Val Ile Ala Ala Ile Asn Gly Phe Ala Leu Gly Gly Gly Cys 100 105 110 Glu Leu Ser Leu Ser Cys Asp Ile Arg Ile Ala Ser Ser Lys Ala Lys 115 120 125 Phe Gly Gln Pro Glu Val Gly Leu Gly Ile Thr Pro Gly Phe Gly Gly 130 135 140 Thr Gln Arg Leu Ala Arg Ala Ile Gly Val Gly Met Ala Lys Glu Leu 145 150 155 160 Ile Tyr Thr Gly Lys Val Ile Asn Ala Glu Glu Ala Leu Arg Ile Gly 165 170 175 Leu Val Asn

Lys Val Val Glu Pro Asp Lys Leu Leu Glu Glu Ala Lys 180 185 190 Ala Leu Val Asp Ala Ile Ile Val Asn Ala Pro Ile Ala Val Arg Met 195 200 205 Cys Lys Ala Ala Ile Asn Gln Gly Leu Gln Cys Asp Ile Asp Thr Gly 210 215 220 Val Ala Tyr Glu Ala Glu Val Phe Gly Glu Cys Phe Ala Thr Glu Asp 225 230 235 240 Arg Val Glu Gly Met Thr Ala Phe Val Glu Lys Arg Asp Lys Ala Phe 245 250 255 Lys Asn Lys 36257PRTClostridium kluyveri 36Met Thr Tyr Lys Thr Leu Leu Leu Glu Lys Gln Asn Gly Ile Thr Ile 1 5 10 15 Ile Lys Met Asn Thr Pro His Asn Leu Asn Ala Ile Ser Gln Gln Ser 20 25 30 Val Glu Asp Leu Phe Ala Val Leu Gln Val Ile Lys Asn Asp Asp Asn 35 40 45 Cys Arg Val Val Ile Leu Thr Gly Glu Gly Lys Gly Phe Ile Gly Gly 50 55 60 Ala Asp Ile Lys His Met Ala Cys Leu Asp Ala Ile Glu Gly Gly Gln 65 70 75 80 Phe Cys Phe Ala Val Ser Lys Cys Thr Leu Glu Met Glu Lys Met Gly 85 90 95 Lys Val Phe Ile Ala Ala Val Asn Gly Phe Ala Leu Gly Ala Gly Leu 100 105 110 Glu Val Ala Leu Gly Cys Asp Ile Arg Ile Phe Ser Lys His Ala Lys 115 120 125 Ile Gly Phe Pro Glu Thr Gly Leu Gly Val Ile Pro Gly Ala Gly Gly 130 135 140 Ala Gln Arg Leu Gln Arg Leu Val Gly Ile Gly Lys Ala Ser Glu Ile 145 150 155 160 Ile Phe Thr Gly Asp Ile Ile Gly Ala Asp Asp Ala Leu Arg Phe Gly 165 170 175 Ile Ala Asn Gln Val Thr Glu Pro Glu Ser Leu Met Asp Thr Ala Met 180 185 190 Ser Met Ala Glu Lys Ile Leu Thr Lys Ser Pro Val Gly Thr Arg Leu 195 200 205 Ala Lys Glu Ala Leu Gln Lys Gly Arg Asp Thr Asp Leu Glu Lys Ala 210 215 220 Leu Glu Tyr Asp Lys Asn Leu Phe Gly Leu Cys Phe Ser Thr Glu Asp 225 230 235 240 Lys Lys Glu Gly Met Ala Ala Phe Ile Glu Lys Arg Lys Pro Val Phe 245 250 255 Lys 37255PRTEscherichia coli 37Met Ser Glu Leu Ile Val Ser Arg Gln Gln Arg Val Leu Leu Leu Thr 1 5 10 15 Leu Asn Arg Pro Ala Ala Arg Asn Ala Leu Asn Asn Ala Leu Leu Met 20 25 30 Gln Leu Val Asn Glu Leu Glu Ala Ala Ala Thr Asp Thr Ser Ile Ser 35 40 45 Val Cys Val Ile Thr Gly Asn Ala Arg Phe Phe Ala Ala Gly Ala Asp 50 55 60 Leu Asn Glu Met Ala Glu Lys Asp Leu Ala Ala Thr Leu Asn Asp Thr 65 70 75 80 Arg Pro Gln Leu Trp Ala Arg Leu Gln Ala Phe Asn Lys Pro Leu Ile 85 90 95 Ala Ala Val Asn Gly Tyr Ala Leu Gly Ala Gly Cys Glu Leu Ala Leu 100 105 110 Leu Cys Asp Val Val Val Ala Gly Glu Asn Ala Arg Phe Gly Leu Pro 115 120 125 Glu Ile Thr Leu Gly Ile Met Pro Gly Ala Gly Gly Thr Gln Arg Leu 130 135 140 Ile Arg Ser Val Gly Lys Ser Leu Ala Ser Lys Met Val Leu Ser Gly 145 150 155 160 Glu Ser Ile Thr Ala Gln Gln Ala Gln Gln Ala Gly Leu Val Ser Asp 165 170 175 Val Phe Pro Ser Asp Leu Thr Leu Glu Tyr Ala Leu Gln Leu Ala Ser 180 185 190 Lys Met Ala Arg His Ser Pro Leu Ala Leu Gln Ala Ala Lys Gln Ala 195 200 205 Leu Arg Gln Ser Gln Glu Val Ala Leu Gln Ala Gly Leu Ala Gln Glu 210 215 220 Arg Gln Leu Phe Thr Leu Leu Ala Ala Thr Glu Asp Arg His Glu Gly 225 230 235 240 Ile Ser Ala Phe Leu Gln Lys Arg Thr Pro Asp Phe Lys Gly Arg 245 250 255 38257PRTPseudomonas putida 38Met Pro Arg Tyr Leu Asp Val Gln Ala Pro Glu Asn Gly Val Gln Leu 1 5 10 15 Ile Thr Leu Gln Arg Pro Glu Ala Leu Asn Ala Leu Cys Thr Glu Leu 20 25 30 Leu Ala Glu Leu Ala Thr Ala Leu Asp Ala Ala Ala Arg Asp Asp Gln 35 40 45 Ile Gly Val Val Val Leu Thr Gly Ser Arg Lys Ala Phe Ala Ala Gly 50 55 60 Ala Asp Ile Arg Glu Met Ala Glu Arg Asp Leu Val Gly Ile Leu Asn 65 70 75 80 Asp Pro Arg Val Ala His Trp Gln Arg Ile Ala Ala Phe Ala Lys Pro 85 90 95 Leu Ile Ala Ala Val Asn Gly Tyr Ala Leu Gly Gly Gly Cys Glu Leu 100 105 110 Val Met Cys Ala Asp Ile Val Ile Ala Gly Ser Asp Ala Arg Phe Gly 115 120 125 Gln Pro Glu Ile Asn Leu Gly Ile Ile Pro Gly Ala Gly Gly Thr Gln 130 135 140 Arg Leu Leu Arg Ala Val Gly Lys Pro Leu Ala Met Gln Met Val Leu 145 150 155 160 Thr Gly Glu Ala Ile Thr Ala Arg His Ala Gln Gln Ala Gly Leu Val 165 170 175 Ser Glu Ile Thr Gln Pro Glu Phe Thr Val Glu Arg Ala Met Gln Ile 180 185 190 Ala Arg Asn Ile Ala Ala Lys Ala Pro Leu Ala Val Arg Leu Ala Lys 195 200 205 Glu Ala Leu Leu Lys Ala Gly Asp Thr Asp Leu Ala Ser Gly Leu Arg 210 215 220 Phe Glu Arg His Ala Phe Thr Leu Leu Ala Gly Thr Ala Asp Arg Asp 225 230 235 240 Glu Gly Ile Gln Ala Phe Gln Glu Lys Arg Pro Ala Arg Phe Gln Gly 245 250 255 Arg 39263PRTPseudomonas putida 39Met Thr Phe Gln His Ile Leu Phe Ser Ile Glu Asp Gly Val Ala Phe 1 5 10 15 Leu Ser Leu Asn Arg Pro Glu Gln Leu Asn Ser Phe Asn Ala Ala Met 20 25 30 His Leu Glu Val Arg Glu Ala Leu Lys Gln Val Arg Gln Ser Ser Asp 35 40 45 Ala Arg Val Leu Leu Leu Thr Ala Glu Gly Arg Gly Phe Cys Ala Gly 50 55 60 Gln Asp Leu Ser Asp Arg Asn Val Ala Pro Asp Ala Glu Val Pro Asp 65 70 75 80 Leu Gly Glu Ser Ile Asp Lys Phe Tyr Asn Pro Leu Val Arg Thr Leu 85 90 95 Arg Asp Leu Pro Leu Pro Val Ile Cys Ala Val Asn Gly Val Ala Ala 100 105 110 Gly Ala Gly Ala Asn Ile Pro Leu Ala Cys Asp Leu Val Leu Ala Gly 115 120 125 Arg Ser Ala Ser Phe Ile Gln Ala Phe Cys Lys Ile Gly Leu Val Pro 130 135 140 Asp Ser Gly Gly Thr Trp Leu Leu Pro Arg Leu Val Gly Met Ala Arg 145 150 155 160 Ala Lys Ala Leu Ala Met Leu Gly Glu Arg Leu Gly Ala Glu Gln Ala 165 170 175 Gln Gln Trp Gly Leu Ile His Arg Val Val Asp Asp Ala Ala Leu Arg 180 185 190 Asp Glu Ala Leu Thr Leu Ala Arg Gln Leu Ala Ser Gln Pro Thr Tyr 195 200 205 Gly Leu Ala Leu Ile Lys Arg Ser Leu Asn Ala Ser Phe Asp Asn Gly 210 215 220 Phe Asp Glu Gln Leu Glu Leu Glu Arg Asp Leu Gln Arg Leu Ala Gly 225 230 235 240 Arg Ser Glu Asp Tyr Arg Glu Gly Val Ser Ala Phe Met Asn Lys Arg 245 250 255 Thr Pro Ala Phe Lys Gly Arg 260 40699PRTRhodopseudomonas palustris 40Met Ser Glu Val Val Thr Arg Ala Thr Gln Asp Gln Val Ala Ile Val 1 5 10 15 Thr Val Asp Ser Pro Pro Val Asn Ala Leu Ser Ala Ala Val Arg Arg 20 25 30 Gly Ile Leu Glu Asn Val Asn Ala Ala Val Ala Asp Pro Ala Val Gln 35 40 45 Ala Ile Val Leu Val Cys Ala Gly Arg Thr Phe Ile Ala Gly Ala Asp 50 55 60 Ile Thr Glu Phe Gly Lys Pro Pro Gln Pro Pro Ala Leu Asn Asp Val 65 70 75 80 Ile Ala Ala Leu Glu Asn Ser Pro Lys Pro Thr Ile Ala Ala Ile His 85 90 95 Gly Thr Ala Leu Gly Gly Gly Leu Glu Val Ala Leu Gly Cys His Phe 100 105 110 Arg Val Ala Val Lys Glu Ala Lys Leu Gly Leu Pro Glu Val Lys Leu 115 120 125 Gly Leu Leu Pro Gly Ala Gly Gly Thr Gln Arg Leu Pro Arg Ala Val 130 135 140 Gly Pro Glu Leu Ala Val Gln Met Ile Val Gly Gly Ser Pro Ile Gly 145 150 155 160 Ala Ala Glu Ala Leu Lys His Gly Leu Val Glu Glu Val Val Glu Asn 165 170 175 Leu Val Ala Gly Ala Val Ala Phe Ala Lys Lys Val Leu Ala Glu Lys 180 185 190 Arg Pro Leu Arg Arg Leu Arg Asp Asp Asp Ser Lys Leu Ala Ala Ala 195 200 205 Lys Ala Asp Arg Ser Ile Phe Thr Asn Ala Val Ala Ala Met Thr Lys 210 215 220 Lys Ala Arg Gly Leu Glu Ala Pro Phe Ala Cys Ala Asp Ala Ile Gly 225 230 235 240 Ala Ala Ile Asp Leu Pro Phe Glu Glu Gly Leu Lys Lys Glu Arg Glu 245 250 255 Gly Phe Met Lys Leu Val Val Ser Asp Gln Ser Lys Ala Gln Arg Tyr 260 265 270 Ala Phe Phe Ala Glu Arg Glu Ala Ala Lys Val Asp Gly Val Pro Asp 275 280 285 Gly Thr Lys Pro Arg Pro Val Ser Arg Val Ala Ile Ile Gly Ala Gly 290 295 300 Thr Met Gly Gly Gly Ile Ala Met Ser Phe Ala Asn Ala Gly Ile Pro 305 310 315 320 Val Thr Leu Ile Glu Thr Gly Glu Glu Gln Leu Lys Arg Gly Leu Gly 325 330 335 Ile Met Gln Lys Asn Trp Glu Ala Thr Ala Ala Arg Gly Gly Leu Pro 340 345 350 Pro Asp Ala Pro Ala Lys Arg Met Ala Leu Ile Thr Gly Leu Val Gly 355 360 365 Leu Glu Asn Val Lys Asp Ala Asp Leu Ile Ile Glu Ala Val Phe Glu 370 375 380 Thr Met Ala Val Lys Lys Glu Val Phe Thr Ala Val Asp Ala His Ala 385 390 395 400 Lys Pro Gly Ala Val Leu Ala Ser Asn Thr Ser Tyr Leu Ser Ile Asp 405 410 415 Glu Ile Ala Ala Thr Thr Lys Arg Pro Gln Asp Val Leu Gly Met His 420 425 430 Phe Phe Ser Pro Ala Asn Val Met Lys Leu Cys Glu Ile Val Arg Gly 435 440 445 Ala Lys Thr Ala Pro Asp Ala Leu Leu Thr Ala Val Ser Ile Ala Lys 450 455 460 Lys Ile Ala Lys Val Pro Val Val Val Gly Val Cys Asp Gly Phe Val 465 470 475 480 Gly Asn Arg Met Leu Ala Ala Arg Ser Lys Gln Ser Glu Lys Leu Leu 485 490 495 Phe Glu Gly Ala Leu Pro Gln Gln Val Asp Ala Val Val Thr Lys Phe 500 505 510 Gly Met Pro Met Gly Pro Phe Ala Met Gly Asp Leu Ala Gly Leu Asp 515 520 525 Ile Gly Trp Arg Ser Arg Lys Asp Arg Gly Ile Lys Ser Glu Ile Ala 530 535 540 Asp Ala Leu Cys Glu Ala Gly Arg Phe Gly Gln Lys Thr Gly Lys Gly 545 550 555 560 Tyr Tyr Lys Tyr Glu Gln Gly Ser Arg Ala Pro Met Pro Asp Pro Glu 565 570 575 Val Glu Thr Leu Ile Asn Asp Thr Leu Ala Lys Leu Gly Leu Lys Arg 580 585 590 Arg Asp Ile Thr Asp Glu Glu Ile Leu Glu Arg Met Val Tyr Pro Met 595 600 605 Ile Asn Glu Gly Ala Arg Ile Leu Glu Glu Lys Ile Ala Ala Arg Pro 610 615 620 Ser Asp Ile Asp Val Val Trp Leu Tyr Gly Tyr Gly Trp Pro Ile Tyr 625 630 635 640 Arg Gly Gly Pro Met His Tyr Ala Asp Ser Val Gly Leu Lys His Ile 645 650 655 Ala Glu Arg Leu Ser Ala Tyr Ala Lys Ala Thr Asn Asp Pro Ser Leu 660 665 670 Glu Pro Ala Pro Leu Leu Ala Arg Leu Ala Ala Glu Gly Lys Thr Phe 675 680 685 Ala Ser Leu Thr Gln Pro Ser Lys Ala Ala Ala 690 695 41242PRTRhodococcus sp. 41Met Asn Thr Leu Lys Ile Glu Asp Arg Asp Asp Arg Met Val Val Thr 1 5 10 15 Leu His Arg Pro Ala Gln Arg Asn Ala Ile Asn Ala Glu Met Ile Gly 20 25 30 Glu Leu His Gln Val Cys Ala Ser Leu Glu Ala Thr Pro Lys Pro Met 35 40 45 Leu Leu Thr Gly Glu Gly Asp His Phe Ala Gly Gly Ala Asp Ile Ala 50 55 60 Glu Leu Arg Glu Arg Gly Arg Asp Glu Ala Phe Ala Gly Ile Asn Arg 65 70 75 80 Asn Leu Phe Asp Arg Ile Ala Lys Leu Pro Met Pro Thr Val Ala Ala 85 90 95 Val Ser Gly Tyr Ala Leu Gly Gly Gly Ala Glu Leu Ser Tyr Ala Cys 100 105 110 Asp Ile Arg Ile Ala Thr Glu Thr Ala Val Phe Gly Asn Pro Glu Pro 115 120 125 Gly Leu Gly Ile Met Ala Ala Ala Gly Ala Ser Tyr Arg Leu Pro Glu 130 135 140 Leu Val Gly Thr Ser Val Ala Lys Gln Val Leu Leu Gly Gly Arg Asn 145 150 155 160 Leu Asp Ala Gln Asp Ala Leu Arg Ser Gly Leu Val Met Ser Val Val 165 170 175 Ala Pro Gly Glu His Ile Asp Ala Ala His Lys Val Ile Asp Arg Ile 180 185 190 Thr Arg Ser Ala Pro Leu Ala Leu Lys Leu Thr Lys Met Ile Val Asp 195 200 205 Ala Pro Gly Ser His Pro Phe Ala Asp Asp Ile Ala Gln Ala Val Leu 210 215 220 Phe Glu Ser Arg Asp Lys His Asp Arg Met Thr Ala Phe Leu Glu Lys 225 230 235 240 Lys Lys 42689PRTPenicillium chrysogenum 42Met Pro Asp Phe Thr Asp Asn Leu Arg Pro Ser Gln Pro Asp Gly Pro 1 5 10 15 Thr Thr Leu Ala Arg Glu Arg Gln Lys Ser Asn Ile Ala Thr Glu Glu 20 25 30 Leu Gly Gln His Leu Leu Gly Ser Asp Gly Phe Leu Val Arg Gln Ala 35 40 45 Arg Ile Leu Pro Ile Ile Gln Gln Glu Pro Leu Phe Ser Lys Asp Gln 50 55 60 Gln Gln Asn Leu Ser Arg Pro Glu Arg Phe Lys Leu Gly Val Ala Arg 65 70 75 80 Ala Lys Leu Leu Arg Gln Met Lys Asp Thr His Lys Trp Ser His Leu 85 90 95 Glu Tyr Gln Met Ala Glu Tyr Leu Val Asp Asp Val Ser Pro Tyr Phe 100 105 110 Leu His Met Glu Met Phe Ile Thr Thr Ile Arg Glu Gln Ala Ser Glu 115 120 125 Glu Gln Gln Ala His Trp Leu Pro Leu Ile Glu Leu Trp Lys Ile Ile 130 135 140 Gly Ala Tyr Ala Gln Thr Glu Leu Gly His Gly Ser Asn Val Arg Gly 145 150 155 160 Leu Glu Leu Glu Ala Arg Trp Asp Asn Arg Thr Lys Glu Phe Val Leu 165 170 175 His Ser Pro Thr Leu Thr Ala Ser Lys Trp Trp Asn Gly Ser Leu Gly 180 185 190 Arg Leu Ala Asn His Ala Ile Val Val Ala Gln Leu Leu Leu Pro Asp 195 200 205 Pro Ser Ser Pro Asp Gln Tyr Val Ser His Gly Pro His Pro Phe Ile 210 215 220 Val Gln Val Arg

Asp Met Lys Thr His Gln Pro Leu Asn Gly Ile Val 225 230 235 240 Val Gly Asp Ile Gly Pro Lys Tyr Gly Tyr Ile Thr Met Asp Asn Ala 245 250 255 Tyr Met Leu Phe Asp Gln Phe Arg Ile Pro His Ser Ala Met Leu Ser 260 265 270 Arg Tyr Ser Lys Val Asp Leu Asn Thr Gly Ile Tyr Thr Lys Pro Glu 275 280 285 Lys Pro Ala Leu Val Tyr Gly Ser Leu Thr Tyr Val Arg Ser Asn Met 290 295 300 Val His Arg Ala Arg Leu Val Leu Ala Arg Ala Val Thr Val Ala Val 305 310 315 320 Arg Tyr Ser Ser Val Arg Arg Gln Phe Gln Asp Arg Asp Gly Asp Lys 325 330 335 Thr Gly Pro Glu Met Ser Val Leu Asp Tyr Pro Thr Val Gln Ile Arg 340 345 350 Ile Leu Pro Leu Leu Ala Thr Thr Phe Ala Leu His Tyr Thr Gly Leu 355 360 365 Ala Met Gln Thr Val Tyr Lys Asn Ala Arg Gln Asp Ile Glu Glu Gly 370 375 380 Asn Phe Asn Ser Leu Ala His Met His Ser Met Ser Ser Gly Leu Lys 385 390 395 400 Ser Leu Cys Thr Ile Phe Ala Ala Asp Gly Ile Glu Thr Cys Arg Arg 405 410 415 Ala Met Gly Gly His Gly Phe Gly Gly Gly Ser Gly Leu Ile Gln Val 420 425 430 Asn Asn Asp Tyr Leu Ser Lys Pro Thr Val Glu Gly Asp Asn Trp Met 435 440 445 Ile Thr Gln Gln Val Ala Ala Tyr Val Ile Lys Lys Met Thr Ala Ala 450 455 460 Val Gly Ser Pro Asp Thr Pro Gly Ile Asp Glu Thr Asp Ala Arg Phe 465 470 475 480 Lys Glu Phe Ile Arg Asn Lys Arg Arg Pro Glu Ser Glu Lys Arg Thr 485 490 495 Tyr Asp Ile Leu Asn Ser Asp Leu Asp Ile Val Lys Ser Phe Glu Leu 500 505 510 Arg Ala Thr Ala Met Ala Ser Ser Thr Lys Leu Ile Arg Val Ile Lys 515 520 525 Lys Arg Asn Trp Asn Ser Leu Leu Ile Gln Leu His Lys Leu Ser Arg 530 535 540 Ala Gln Ser Glu Ser Ile Ile Val Ala Thr Phe Phe Asp Ala Leu Ser 545 550 555 560 Asn Asp Lys Thr Leu Ser Ala Pro Thr Lys Asn Val Leu Trp Asp Cys 565 570 575 Tyr Arg Leu Phe Ala Leu Tyr Ser Met Glu Asn Glu Ser Phe Glu Phe 580 585 590 Leu Arg Thr Asn Ala Val Ser Gln Thr Asp Leu Asp Ser Leu Ala Ser 595 600 605 Arg Val Gln Asp Leu Met Ala Arg Ile Arg Pro His Ala Val Thr Leu 610 615 620 Val Asp Ser Trp Met Ile Pro Asp Tyr Leu Leu Asp Ser Ala Leu Gly 625 630 635 640 Arg Tyr Asp Gly Arg Val Tyr Glu Asp Leu Phe Asn Arg Ala His Arg 645 650 655 Leu Asn Pro Leu Asn Arg Ile Thr Phe Asn Pro Asn Tyr Trp Glu Asp 660 665 670 Glu Ile Val Lys Gly Ser Gly Asp Asn Gly Arg Gly Ile Leu Ser Lys 675 680 685 Leu 43425PRTPenicillium chrysogenum 43Met Ser Val Ser Asn Val Pro Phe Ala Asp Pro Leu Trp Leu Asn Arg 1 5 10 15 Lys His Ser Pro Tyr Tyr Lys Asp Ser His Arg Lys Leu Gln Lys Glu 20 25 30 Val Arg Gln Tyr Val Asp Glu His Ile Ser Pro Phe Cys Glu Glu Trp 35 40 45 Glu Lys Gln Gly Phe Val Pro Pro Glu Ala Gln Lys Arg His Ala Glu 50 55 60 Leu Gly Tyr Thr Ala Val Ala Ser Phe Pro Leu Ala Ala Asp Tyr Leu 65 70 75 80 Asp Gly Gln Arg Leu Pro Gly Asp Ile Asn Pro Tyr Glu Trp Asp Gly 85 90 95 Phe His Asp Ile Val Val Ile Asp Glu Leu Ala Arg Cys Gly Tyr Leu 100 105 110 Gly Ile Val Trp Ala Leu Gly Cys Gly Asn Ser Ile Gly Gly Pro Pro 115 120 125 Ile Ile Asn Phe Gly Asn Glu Glu Gln Lys Arg Arg Phe Leu Pro Asp 130 135 140 Met Leu Lys Gly Lys Ile Arg Phe Cys Leu Gly Val Thr Glu Pro Asp 145 150 155 160 Ala Gly Ser Asp Val Ala Gly Ile Thr Thr Val Ala Glu Arg Lys Gly 165 170 175 Asp Ala Tyr Ile Val Asn Gly Ala Lys Lys Trp Ile Thr Asn Gly Ile 180 185 190 Phe Ala Asp Phe Cys Thr Ala Ala Val Arg Thr Gly Gly Ser Gly Thr 195 200 205 His Gly Ile Ser Ala Leu Val Ile Pro Met Lys Ala Pro Gly Val Ile 210 215 220 Cys Arg Lys Ile Glu Asn Ser Gly Val His Ala Ser Gly Ser Thr Tyr 225 230 235 240 Ile Glu Phe Asp Gln Val Glu Val Pro Val Asp Asn Leu Leu Gly Glu 245 250 255 Glu Asn Lys Gly Phe Pro Val Ile Met Asn Asn Phe Asn His Glu Arg 260 265 270 Leu Trp Leu Ala Cys Thr Ser Leu Arg Met Ala Arg Val Cys Ala Glu 275 280 285 Asp Ala Tyr Gln His Ala Ile Thr Arg Glu Thr Phe Gly Lys Arg Leu 290 295 300 Ile Glu Asn Gln Ile Ile Arg Ser Lys Phe Ser Ala Met Ala Arg Ser 305 310 315 320 Leu Asp Ser Asn Tyr Ala Trp Met Glu Gln Leu Val Tyr Ile Ala Glu 325 330 335 Ile Ala Lys Lys Glu Gly Thr Asp Ala Gly Thr Gly Gly Leu Phe Ala 340 345 350 Asn Leu Lys Val Leu Ala Gly Gln Thr Leu Glu Lys Val Asn Arg Glu 355 360 365 Ser Gln Gln Val Met Gly Gly Leu Gly Tyr Ser Lys Asn Gly Arg Gly 370 375 380 Ser Arg Ile Glu Gln Val Ser Arg Asp Val Arg Val Met Val Val Gly 385 390 395 400 Gly Gly Ser Glu Glu Ile Leu Ser Glu Leu Ala Val Asn Gln Glu Ile 405 410 415 Lys Ala Met Lys Lys Gln Ser Lys Leu 420 425 44605PRTPenicillium chrysogenum 44Met Ala Ala Gln Ser Arg Val Pro Ala Thr Ala Glu Ser Gly Thr Phe 1 5 10 15 Thr Gln Leu Gly Pro Leu Pro Asn Thr Tyr Thr Ser Asp Ile Ser Leu 20 25 30 Gln Arg Met Leu Gly Trp Tyr Leu Pro Ala Gln Thr Leu Lys Leu Ile 35 40 45 Glu Pro His Leu Ala Gln Leu Gly Glu Glu Ala Val Ser Pro Gln Val 50 55 60 Phe Ala Trp Asn Ala Asp Ala Glu Thr Asn Leu Pro Tyr Val Lys Lys 65 70 75 80 Tyr Asn Val Trp Gly Gln Arg Tyr Ala Tyr Asp Arg Leu Val Thr Thr 85 90 95 Asp Gly Trp Lys Gln Leu Gly Lys Trp Gly Ala Lys His Gly Val Val 100 105 110 Ser Leu Gly Tyr Asp His Thr Tyr Gly Val Tyr Arg Arg Thr Ala Gln 115 120 125 Tyr Ala Ala Val Tyr Leu Tyr Ala Pro Ser Ser Ala Met Tyr Arg Cys 130 135 140 Pro Met Ser Met Ser Asp Gly Ala Ala Leu Thr Ser Gly Gln Trp Met 145 150 155 160 Thr Glu Arg Ala Gly Gly Ser Asp Val Gln Asn Thr Glu Thr Trp Ala 165 170 175 Thr Tyr Ala Pro Leu Pro Gln Glu Ser Lys Thr Ser Asp Val Leu Ala 180 185 190 Glu Gly Asp Tyr Leu Ile Ser Gly Phe Lys Phe Phe Ser Ser Ala Thr 195 200 205 Asp Ala Asn Val Ala Phe Leu Leu Ala Lys Thr Asp Ser Gly Lys Leu 210 215 220 Ser Thr Phe Ile Ala Pro Leu Arg Lys Thr Ser Ile Gly Ala Asp Gly 225 230 235 240 Lys Pro Glu Glu Thr Ser Asn Gly Val Arg Ile His Arg Phe Lys Asn 245 250 255 Lys Leu Gly Thr Lys Glu Leu Pro Thr Ala Glu Leu Glu Leu Lys Gly 260 265 270 Met Arg Ala His Leu Val Gly Glu Leu Asp Gln Gly Ile Val Thr Ile 275 280 285 Ala Pro Leu Leu Asn Thr Thr Arg Ile Gln Thr Leu Leu Gly Thr Leu 290 295 300 Ser Thr Trp Arg Arg Ala Ile Ser Ile Thr Lys Asn Phe Ala Lys Ser 305 310 315 320 Arg Thr Thr Val Gly Glu Pro Leu Trp Leu Ile Pro Met His Leu Arg 325 330 335 Leu Leu Ala Asp Val Glu Val Lys His Arg Gly Ala Ile Asn Leu Ala 340 345 350 Phe Phe Thr Ile Ala Val Met Gly Leu Ile Glu Asn Pro Ser Ser Pro 355 360 365 Ala Arg His Ala His Met Pro Arg Asp Pro Thr Glu Ala Lys Val Val 370 375 380 Phe Arg Val Leu Thr Ala Thr Ser Lys Gly Val Val Ser Lys Met Ser 385 390 395 400 Met Val Gly Val Gln Glu Cys Gln Glu Ala Ile Gly Gly Val Gly Tyr 405 410 415 Ile Asp Glu Pro Asp Glu Pro Glu Phe Asn Ile Ser Arg Leu Leu Arg 420 425 430 Ser Ala Ala Val Tyr Pro Ile Trp Glu Gly Thr Thr Asn Val Leu Ala 435 440 445 Ser Glu Leu Val Arg Phe Leu Met Lys Gly Asp Asn Leu Ser Ile Leu 450 455 460 Ser Gly Trp Leu Gly His Val Val Ser Leu Ile Arg Thr Pro Ser Leu 465 470 475 480 Ala Gly Ala Leu Lys Gln Ala Met Ala Ser Tyr Leu Ser Arg Val Thr 485 490 495 Ser Thr Arg Pro Gln Ala Ala Leu Leu Ala Asp Ala Arg Arg Val Met 500 505 510 Phe Thr Phe Ala Trp Ile Leu Ser Gly Ala Leu Leu Thr Leu Asp Ala 515 520 525 Glu Arg Asp Glu Asp Glu Val Ala Met Glu Ile Ala Arg Arg Trp Val 530 535 540 Leu Leu Gly Glu Gly Gly Val Gly Glu Phe Val Tyr Arg Asp Ile Ala 545 550 555 560 Lys Pro Tyr Gln Cys Phe Asn Leu Arg Ser Gly Arg Asp Glu His Thr 565 570 575 Arg Leu Asp Cys Lys Ile Ala Trp Gly Val Glu Leu Pro Gly Lys Ile 580 585 590 Val Phe Gly His Arg Ser Leu Ser Glu Ser Ser Lys Leu 595 600 605 45425PRTPenicillium chrysogenum 45Met Met Asn Arg Ser Leu Leu Arg Ala Ala Ala Arg Ser Ile Gln Ala 1 5 10 15 Gly Pro Thr Ser Val Ala Gly Arg Arg Tyr Ala Ser Ser Ala Val Phe 20 25 30 Asn Trp Glu Asp Pro Leu Ala Ala Ala Glu Leu Phe Thr Asp Glu Glu 35 40 45 Leu Ala Ile Gln Asp Thr Ala Arg Gln Tyr Cys Gln Asp Lys Leu Ala 50 55 60 Pro Arg Val Leu Glu Ala Tyr Arg Asn Glu Asp Tyr Asp Arg Arg Ile 65 70 75 80 Leu Glu Glu Met Gly Asp Leu Gly Leu Leu Gly Ala Ser Ile Glu Gly 85 90 95 Tyr Gly Cys Ala Gly Val Ser Thr Val Ala Ser Gly Leu Ile Thr Lys 100 105 110 Glu Val Glu Arg Val Asp Ser Gly Tyr Arg Ser Gly Met Ser Val Gln 115 120 125 Ser Ser Leu Ala Met Thr Gly Ile Tyr Glu Phe Gly Thr Glu Glu Gln 130 135 140 Lys Gln Arg Phe Leu Pro Ser Leu Ala Lys Gly Thr Leu Ala Gly Cys 145 150 155 160 Phe Gly Leu Thr Glu Pro Asn His Gly Ser Asp Pro Gly Ser Met Glu 165 170 175 Thr Val Ala Arg Glu His Pro Thr Gln Lys Gly Met Tyr Leu Leu Ser 180 185 190 Gly Ser Lys Thr Trp Ile Thr Asn Ser Pro Ile Ala Asp Val Ala Leu 195 200 205 Val Trp Ala Lys Leu Glu Ser Thr Gly Lys Ile Arg Gly Phe Ile Val 210 215 220 Glu Arg Glu Arg Ala Thr Pro Gly Ser Tyr Glu Thr Pro Ala Ile Lys 225 230 235 240 Asn Lys Ser Ala Leu Arg Ala Ser Ile Thr Gly Met Ile Gln Met Asp 245 250 255 Asn Cys Pro Val Pro Ala Glu Asn Met Leu Pro Glu Val Glu Gly Leu 260 265 270 Lys Gly Pro Phe Thr Cys Leu Asn Ser Ala Arg Leu Gly Ile Ala Phe 275 280 285 Gly Ala Met Gly Ala Leu Glu Asp Cys Leu Ala Arg Ala Arg Glu Tyr 290 295 300 Ser Leu Glu Arg Lys Gln Phe Lys Gly Asn Pro Leu Ala Lys Tyr Gln 305 310 315 320 Leu Ile Gln Met Lys Leu Ala Asn Ala Ala Thr Asp Ala Ala Tyr Gly 325 330 335 Thr Leu Ala Ala Val Gln Val Ala Arg Leu Lys Asp Ala Gly Lys Ala 340 345 350 Thr Pro Glu Met Ile Ser Met Ile Lys Arg Gln Asn Cys Asp Arg Ala 355 360 365 Leu Ala Asn Ser Arg Ile Leu Gln Glu Val Phe Gly Gly Asn Ala Ala 370 375 380 Ser Asp Glu Tyr His Ile Ala Arg His Val Ala Asn Leu Phe Val Val 385 390 395 400 Gln Thr Tyr Glu Gly Gln Ser Asp Ile His Ala Leu Ile Leu Gly Arg 405 410 415 Ala Ile Thr Gly Lys Gln Ala Phe Val 420 425 46633PRTPenicillium chrysogenum 46Met Ser Ser Ser Gln Pro Ala Thr Ala Asp Ser Gly Tyr Ile Thr Asp 1 5 10 15 Pro Gly Pro Leu Glu Asn Thr Tyr Thr Ser Asp Pro Ser Leu Gln Arg 20 25 30 Ala Leu Ala Trp Tyr Leu Pro Ser Ala Thr Leu Gln Ser Val Gln Pro 35 40 45 His Leu Thr Gln Phe Gly Ala Glu Ala Ile Ser Glu Gln Val Arg Glu 50 55 60 Trp Ser Ala Asp Ala Glu Arg Asn Val Pro Tyr Val Lys Ser His Asn 65 70 75 80 Val Trp Gly Lys Arg Tyr Asp Tyr Asp Arg Leu Val Thr Thr Glu Gly 85 90 95 Trp Lys Gln Leu Gly Lys Trp Gly Ala Arg Asn Arg Ile Val Ser Ala 100 105 110 Gly Tyr Asp Lys Ser Leu Gly Val Asp Arg Arg Thr Val Gln Tyr Ala 115 120 125 Leu Asn Tyr Leu Tyr Ser Pro Ser Ser Gly Leu Tyr Ser Cys Pro Ile 130 135 140 Ser Met Thr Asp Gly Ala Ala Phe Ile Leu Ser Ser Arg Ile Asn Lys 145 150 155 160 Leu Pro Ser Thr His Pro Phe His Thr Ala Phe Gln Gly Leu Ile Ser 165 170 175 Glu Lys Asp Asp His Trp Thr Ser Gly Gln Trp Met Thr Glu Arg Ala 180 185 190 Gly Gly Ser Asp Val Gln Asn Thr Glu Thr Trp Ala Thr Tyr Ser Pro 195 200 205 Leu Ala Ser Ser Ser Gly Ser Glu Pro Leu Gly Asp Gly Asp Tyr Leu 210 215 220 Ile Ser Gly Phe Lys Phe Phe Ser Ser Ala Thr Asp Ala Asn Leu Ala 225 230 235 240 Leu Leu Leu Ala Lys Thr Pro Ser Gly Lys Leu Ser Thr Phe Leu Ala 245 250 255 Pro Leu Arg Arg Thr Val Val Gly Gly Asp Gly Val Ser Arg Val Val 260 265 270 Ser Asn Gly Val Arg Ile His Arg Leu Lys Asn Lys Leu Gly Thr Lys 275 280 285 Glu Leu Pro Thr Ala Glu Leu Glu Leu Lys Asp Met Arg Ala His Leu 290 295 300 Ile Gly Glu Ile Asp Gln Gly Ile Val Thr Ile Ala Pro Leu Leu Asn 305 310 315 320 Val Thr Arg Leu His Thr Phe Val Gly Ser Leu Ala Gly Trp Arg Arg 325 330 335 Ala Ile Ser Ile Thr Lys Ser Phe Ala Lys Ala Arg Thr Thr Val Gly 340 345 350 Glu Pro Leu Trp Leu Ile Pro Met His Leu Arg Leu Leu Ala Asp Met 355 360 365 Glu Val Lys His Arg Gly Ala

Met Asn Leu Ala Trp Phe Thr Val Ala 370 375 380 Leu Phe Gly Val Val Glu Asp Arg Thr Pro Ser Ser Asn Lys Ile Ala 385 390 395 400 His Leu Pro Gln Pro Gly Lys Glu Ala Glu Val Val Phe Arg Thr Leu 405 410 415 Thr Ala Thr Ala Lys Ala Val Ile Ser Lys Met Ala Thr Ala Gly Ile 420 425 430 Gln Glu Cys Gln Glu Ser Met Gly Gly Val Gly Tyr Met Asp Glu Ala 435 440 445 Asp Glu Pro Glu Phe Asn Ile Ser Arg Ile Leu Arg Asn Asn Ala Val 450 455 460 Asn Ser Ile Trp Glu Gly Thr Thr Asn Val Leu Ala Ser Glu Phe Val 465 470 475 480 Arg Phe Leu Ile Lys Lys Asp Asn Leu Lys Ile Phe Gly Thr Trp Leu 485 490 495 Asp Arg Thr Leu Ala Leu Ile Gln Ser Val Asp Leu Arg Asn Ala Leu 500 505 510 Thr Ala Ala Trp Leu Ala Leu His Ala Arg Phe Met Thr Gln Asp Pro 515 520 525 Ala Thr Thr Val Ala Asp Gly Arg Arg Phe Met Phe Thr Val Ala Trp 530 535 540 Ile Leu Ser Gly Ala Leu Leu Ala Leu Asp Thr Glu Arg Asp Asn Asp 545 550 555 560 Pro Val Thr Ala Glu Ile Ala Arg Arg Trp Ile Leu Ser Ala Glu Gly 565 570 575 Gly Val Gly Glu Gln Val Phe His Asp Ile Val Thr Val Ser Gly Thr 580 585 590 Ala Ser Ala Thr Ser Gly Gly Glu Glu His Leu Gln Trp Asp Cys Arg 595 600 605 Ile Ala Trp Gly Val Asp Leu Pro Ala Asn Arg Ala Ser Gly His Arg 610 615 620 Ser Leu Gln Lys Ala Gly Ser Lys Leu 625 630 47695PRTPenicillium chrysogenum 47Met Pro Ser Pro Pro Pro Asp Trp Val Lys Ala Leu Lys Pro Ser Gly 1 5 10 15 Pro Gln Gly Ser Glu Leu Leu His Gln Glu Arg Ala Gln Ser Asn Val 20 25 30 Asp Val Glu Arg Leu Ser Glu Leu Leu His Thr Lys Glu Thr Leu Glu 35 40 45 Arg Arg Ala Ser Leu Leu Ala Leu Leu Gln Pro Glu Lys Val Phe Asp 50 55 60 Lys Ser Gln Asn His Ser Leu Gly Arg Val Glu Arg Leu Gln Arg Ser 65 70 75 80 Leu Ala Lys Ala Lys Arg Leu Gln Gln Leu Ala Glu Glu His Lys Trp 85 90 95 Ser Met Gln Glu Leu His Ala Ala Asn Asp Leu Ile Gly Glu Pro Thr 100 105 110 Pro Tyr Gly Leu His Ala Ser Met Phe Leu Val Thr Leu Arg Glu Gln 115 120 125 Gly Thr Pro Glu Gln His Lys Leu Phe Leu Glu Arg Ala Glu Lys Tyr 130 135 140 Glu Ile Ile Gly Cys Tyr Ala Gln Thr Glu Leu Gly His Gly Ser Asn 145 150 155 160 Val Arg Gly Leu Glu Thr Thr Ala Thr Trp Asn Ser Asn Asp Lys Thr 165 170 175 Phe Thr Ile Asn Ser Pro Thr Leu Thr Ala Ser Lys Trp Trp Ile Gly 180 185 190 Ser Leu Gly Arg Thr Ala Asn His Ala Val Val Met Ala Gln Leu Phe 195 200 205 Ile Asp Gly Lys Asn Tyr Gly Pro His Pro Phe Val Val Gln Val Arg 210 215 220 Asp Leu Glu Thr His Gln Pro Leu Asp Asn Val Tyr Val Gly Asp Ile 225 230 235 240 Gly Pro Lys Phe Gly Tyr Asn Thr Met Asp Asn Gly Phe Leu Leu Phe 245 250 255 Asn Asn Val Lys Ile Pro His Val Asn Met Leu Ala Arg Phe Cys Gln 260 265 270 Val Asp Lys Glu Thr Asn Gln Tyr Ala Lys Pro Ala Met Pro Ser Leu 275 280 285 Val Phe Gly Thr Met Thr Trp Val Arg Ala Asn Ile Val Leu Asp Ala 290 295 300 Gly Gly Val Leu Ala Arg Gly Val Thr Ile Ala Thr Arg Tyr Cys Ala 305 310 315 320 Val Arg Arg Gln Phe Gln Asp Arg Asp Ala Asp Pro His Ala Gly Glu 325 330 335 Thr Gln Val Leu Asn Tyr Lys Met Val Gln Val Arg Leu Leu Pro Leu 340 345 350 Leu Ala Ser Met Tyr Ala Leu His Phe Thr Gly Arg Gly Met Met Arg 355 360 365 Leu Tyr Glu Glu Asn Gln Ser Arg Met Lys Ala Ala Ser Ser Pro Asp 370 375 380 Gln Glu Ser Arg Gly Ala Gly Pro Glu Gln Leu Arg Ala Gly Ala Asn 385 390 395 400 Leu Leu Ala Asp Leu His Ala Thr Ser Cys Gly Leu Lys Ala Leu Ala 405 410 415 Ser Thr Thr Ala Gly Glu Gly Leu Glu Ile Cys Arg Arg Ala Cys Gly 420 425 430 Gly His Gly Tyr Ser Ser Tyr Ser Gly Ile Gly Pro Ala Tyr Ala Asp 435 440 445 Tyr Leu Pro Thr Leu Thr Trp Glu Gly Asp Asn Tyr Met Leu Thr Gln 450 455 460 Gln Val Ala Arg Tyr Leu Leu Lys Ser Ala Arg Ala Val Leu Ala Gly 465 470 475 480 Lys Pro Ala Arg Asn Asp Thr Ser Gln Ile Leu Gln Ala Tyr Leu Asp 485 490 495 Arg Arg Asp Lys Gly Ala Ser Phe Asp Val Leu Asp Glu Asp Lys Asp 500 505 510 Ile Val Ala Ala Phe Gly Trp Arg Thr Ala His Leu Thr Phe Glu Ala 515 520 525 Leu Lys His Arg Asp Ala Glu Gln Arg Ser Trp Asn Ser Leu Leu Val 530 535 540 Asp Phe Trp Arg Leu Ser Thr Ala His Ser Gln Tyr Leu Met Val Lys 545 550 555 560 Asn Phe Tyr Glu Ala Val Ser Ser Pro Glu Leu Ser Gly Ala Leu Asp 565 570 575 Pro Glu Thr Lys Gly Leu Met His Gln Leu Phe Arg Leu Phe Ser Leu 580 585 590 His Thr Leu Glu Arg Glu Ala Ala Glu Phe Phe Ser Ser Gly Ala Val 595 600 605 Thr Val Arg Gln Ile Thr Leu Thr Arg Thr Thr Ala Val Leu Lys Leu 610 615 620 Leu Asp Asp Ile Arg Pro His Ala Val Arg Leu Val Asp Ala Trp Ala 625 630 635 640 Ile Pro Asp Trp Gln Leu Asp Ser Ser Leu Gly Arg Tyr Asp Gly Lys 645 650 655 Val Tyr Glu Asp Leu Phe Arg Arg Ala Ser Glu Glu Asn Pro Val Asn 660 665 670 Glu Leu Val Phe Asp Pro Tyr Pro Trp Asn Ser Ala Leu Leu Lys Asn 675 680 685 Glu Pro Ala Lys Ser Lys Leu 690 695 48542PRTPenicillium chrysogenum 48Met Ala Lys Thr Phe Ser Lys Glu Asp Val Ala Ser His Ser Lys Gly 1 5 10 15 Asp Ser Pro Trp Ile Ile Ile Asp Glu Asp Val Tyr Asp Val Ser Lys 20 25 30 Phe Gln Glu Glu His Pro Val Leu Gln Arg Val Ala Gly Lys Asp Ala 35 40 45 Ser Lys Gln Phe Trp Lys Tyr His Asn Glu Gly Ile Leu Lys Lys Tyr 50 55 60 Lys Gly Gln Leu Gln Ile Gly Ser Leu Asp Thr Lys Lys Ala Ala Pro 65 70 75 80 Ala Pro Pro Thr Pro Ala Pro Ala Pro Lys Lys Ala Ala Pro Glu Pro 85 90 95 Lys Ser Thr Ala Ser Ser Ser Ser Val Thr Pro Pro Ala Thr Gly Ala 100 105 110 Pro Gln Asp Pro Tyr Gly Glu Leu Ile Pro Phe Ala Asp Pro Ser Trp 115 120 125 Tyr Gln Gly Tyr Ala Ser Pro Tyr Phe Asn Glu Ser His Ala Ala Leu 130 135 140 Arg Asp Glu Val Arg Gln Trp Val Glu Ser Glu Ile Glu Pro Tyr Val 145 150 155 160 Thr Glu Trp Asp Glu Ala Lys Glu Val Pro Ala His Ile Tyr Lys Gln 165 170 175 Met Gly Glu Arg Gly Tyr Leu Ala Gly Leu Leu Gly Val His Phe Pro 180 185 190 Glu Lys His Thr Pro His Arg Val Lys Ser Val Ser Pro Asp Arg Trp 195 200 205 Asp Leu Phe His Glu Met Leu Leu Thr Asp Glu Leu Ser Arg Ala Gly 210 215 220 Ser Gly Gly Leu Val Trp Ser Leu Ile Gly Gly Tyr Gly Ile Gly Cys 225 230 235 240 Pro Pro Leu Val Lys Phe Gly Lys Lys Pro Leu Val Asp Arg Ile Leu 245 250 255 Pro Gly Ile Leu Ala Gly Asp Lys Arg Ile Cys Leu Ala Ile Thr Glu 260 265 270 Pro Asp Ala Gly Ser Asp Val Ala Asn Leu Gly Cys Glu Ala Lys Leu 275 280 285 Thr Glu Asp Gly Lys His Tyr Ile Val Asn Gly Glu Lys Lys Trp Ile 290 295 300 Thr Asn Gly Ile Tyr Ser Asp Tyr Phe Thr Thr Ala Val Arg Thr Gly 305 310 315 320 Lys Asp Gly Met Asn Gly Leu Ser Val Leu Leu Ile Glu Arg Glu Ala 325 330 335 Gly Gly Val Ser Thr Arg Arg Met Asp Cys Gln Gly Val Trp Ser Ser 340 345 350 Gly Thr Thr Tyr Val Thr Phe Glu Asp Val Lys Val Pro Val Glu Asn 355 360 365 Leu Ile Gly Lys Glu Asn Gln Gly Phe Lys Val Ile Met Thr Asn Phe 370 375 380 Asn His Glu Arg Ile Gly Ile Val Ile Gln Cys Val Arg Phe Ser Arg 385 390 395 400 Val Cys Tyr Glu Glu Ser Met Lys Tyr Ala His Lys Arg Lys Thr Phe 405 410 415 Gly Lys Arg Leu Ile Asp His Pro Val Ile Arg Met Lys Leu Ala His 420 425 430 Met Ala Arg Gln Ile Glu Ala Thr Tyr Asn Trp Leu Glu Asn Ile Ile 435 440 445 Phe Gln Cys Gln Ser Met Glu Asp Thr Glu Ala Met Leu Lys Leu Gly 450 455 460 Gly Ala Ile Ala Gly Leu Lys Ala Gln Ser Thr Gln Cys Phe Glu Phe 465 470 475 480 Cys Ala Arg Glu Ala Ser Gln Ile Phe Gly Gly Leu Ser Tyr Ser Arg 485 490 495 Gly Gly Gln Gly Gly Lys Ile Glu Arg Leu Tyr Arg Asp Val Arg Ala 500 505 510 Tyr Ala Ile Pro Gly Gly Ser Glu Glu Ile Met Leu Asp Leu Ser Met 515 520 525 Arg Gln Ser Leu Arg Val His Gly Met Phe Gly Met Lys Leu 530 535 540 49438PRTPenicillium chrysogenum 49Met Ala Asp Thr Leu Arg Pro Ala Thr Ala Pro Tyr Ser Glu Pro Leu 1 5 10 15 Leu Pro Gln Leu Asp Val Arg Asn Pro Tyr Tyr Thr Asp Leu His His 20 25 30 Asn Leu Arg Ala Thr Val Arg Glu Tyr Val Asp Thr Tyr Ile Ser Pro 35 40 45 Tyr Ala Ala Glu Trp Glu Glu Ala Gly Gln Val Pro Glu Ala Val Arg 50 55 60 Arg Arg His Cys Lys Leu Gly Tyr Ser Ile Val His Pro Leu Thr Ser 65 70 75 80 Glu Glu Asp Ser Ala Gly Ile Ser Leu Pro Gly Asn Val Pro Arg Glu 85 90 95 Lys Trp Asp Thr Trp Cys Ser Leu Ile Val Ser Asp Glu Leu Thr Arg 100 105 110 Val Gly Tyr Val Gly Val Ile Trp Gly Leu Gly Gly Gly Asn Gly Ile 115 120 125 Gly Cys Pro Pro Val Ala Arg Phe Gly Asn Ala Glu Gln Arg Lys Lys 130 135 140 Trp Leu Pro Gly Val Ala Arg Gly Asp Ile Arg Phe Cys Leu Gly Ile 145 150 155 160 Thr Glu Pro Asp Ala Gly Ser Asp Val Ala Asn Ile Gln Thr Thr Ala 165 170 175 Gln Arg Asp Gly Asn His Tyr Val Val Asn Gly Ser Lys Lys Trp Ile 180 185 190 Thr Asn Gly Ile Trp Ala Asp Tyr Cys Thr Ala Ala Val Arg Thr Gly 195 200 205 Gly Pro Gly Arg Ser Gly Ile Ser Leu Leu Val Ile Pro Leu Ala Thr 210 215 220 Ala Gly Val Thr Arg Arg Arg Met His Asn Ser Gly Val Asn Ala Ser 225 230 235 240 Gly Ser Thr Phe Ile Glu Phe Glu Asp Val Arg Val Pro Val Glu Asn 245 250 255 Leu Val Gly Gln Glu Asn Lys Gly Phe Pro Leu Ile Met Ser Asn Phe 260 265 270 Asn Pro Glu Arg Leu Ala Leu Ala Cys Ala Ser Leu Arg Leu Ala Arg 275 280 285 Val Cys Ala Glu Asp Ala Tyr Asn Tyr Ala Ile Lys Arg Glu Thr Phe 290 295 300 Gly Ser Ala Leu Ile Glu Lys Gln Ala Ile Gln Ser Lys Ile Phe Lys 305 310 315 320 Phe Gly Leu Met Ile Glu Pro Ala Tyr Ala Phe Met Glu Gln Leu Val 325 330 335 Asn Ile Leu Glu Leu Thr Lys Asp Arg Pro Ser Asp Asp Val Asn Ile 340 345 350 Gly Gly Met Thr Ala Leu Leu Lys Val Met Ser Thr Arg Ala Leu Glu 355 360 365 Lys Ser Val Arg Glu Ala Gln Gln Ile Met Gly Gly Ala Gly Tyr Asn 370 375 380 Lys Ala Gly Lys Gly Ala Arg Ile Glu Gln Ile Ser Arg Asp Ala Arg 385 390 395 400 Val His Val Val Gly Gly Gly Ser Glu Glu Ile Met Ala Gly Leu Ala 405 410 415 Leu Arg Glu Glu Thr Lys Ala Ile Arg Thr Arg Arg Lys Ala Leu Glu 420 425 430 Lys Arg Gln Ser Lys Val 435 50453PRTPenicillium chrysogenum 50Met Asn Phe Asp Leu Pro Ala Asp Leu Lys Thr His Leu Glu Ser Ile 1 5 10 15 Asp Ser Phe Ile His Ser Thr Ile Leu Pro Leu Gln His Ser Asn Asp 20 25 30 Asn Asn Arg Phe Phe Asp His Arg Arg Glu Tyr Glu Arg Thr Asp Trp 35 40 45 Glu Asn Asn Gly Asn Pro Arg Lys Glu Trp Glu Glu Leu Leu Gly Glu 50 55 60 Ala Arg Thr Leu Ala Asp Ser Ser Gly Leu Tyr Arg Phe Ala Leu Pro 65 70 75 80 Arg Val Tyr Gly Gly Gln Ser His Pro Asp Val Asn Leu Trp Met Ser 85 90 95 Ala Ile Arg Tyr His Leu Ser Ser Asn Ala Val Tyr Gly Gly Gly Leu 100 105 110 Gly Leu Ala Asn Asp Leu Gln Asn Glu His Cys Ile Val Gly Asn Phe 115 120 125 Pro Asp Val Leu Met Leu His His Phe Gly Asn Glu Gln Gln Arg Asn 130 135 140 Thr Leu Ile Pro Ala Arg Leu Arg Gly Glu Phe Arg Thr Thr Phe Gly 145 150 155 160 Leu Thr Glu Pro Asp His Gly Ser Asp Ala Thr Phe Met Ser Thr Thr 165 170 175 Ala Arg Pro Thr Arg Gly Gly Phe Glu Ile Lys Gly Ala Lys Lys Trp 180 185 190 Gln Thr Gly Ala His His Cys Thr His Phe Leu Ile Phe Ala Arg Thr 195 200 205 Ser Gly Lys Ala Gly Ser Ala Gln Gly Ile Thr Ala Phe Leu Val Pro 210 215 220 Arg Asp Thr Arg Gly Val Arg Ile Val Ser Tyr Glu Trp Thr Leu Asn 225 230 235 240 Met Pro Thr Asp His Ala Thr Val Glu Leu Asn Ser Val Trp Val Pro 245 250 255 Glu Ser Ala Val Leu Gly Ser Ile Asp Gln Gly Leu Ala Ile Ala Gln 260 265 270 Thr Phe Val His Glu Asn Arg Ile Arg Gln Ala Ala Ser Ser Cys Gly 275 280 285 Ala Ala Arg Tyr Cys Leu Asp Arg Ser Ile Asp Arg Ala Arg Ala Arg 290 295 300 Lys Ile Trp Gly Glu Gly Lys Ser Leu Ala Asp Asn Gln Ala Ile Gln 305 310 315 320 Phe Pro Val Val Glu Leu Met Thr Gln Val Glu Met Leu Arg Leu Phe 325 330 335 Ile Leu Lys Thr Ser Trp Glu Met Asp Arg Ile Val Ala Glu Cys Gln 340 345 350 Ser

Ser Lys Ala Gln Arg Ala Pro Trp Val Glu Ile Glu Gly Arg Leu 355 360 365 Ser Asp Gln Val Ala Met Cys Asn Phe Trp Ala Asn Arg Leu Cys Cys 370 375 380 Gln Ala Ala Asp Arg Ala Ile Gln Ile His Gly Gly Asp Gly Tyr Ser 385 390 395 400 Arg His Tyr Pro Phe Glu His Ile Tyr Arg His Phe Arg Arg Tyr Arg 405 410 415 Ile Thr Glu Gly Ala Glu Glu Ile Gln Met Arg Lys Ile Gly Ala Tyr 420 425 430 Ile Phe Gly Phe Ala Gly Pro Lys Lys Arg Glu Met Lys His Glu His 435 440 445 Ser Lys Ala Arg Ile 450 51441PRTPenicillium chrysogenum 51Met Ala Tyr Asn Ser Pro Asn Pro Ile Pro Phe Ser Glu Pro Pro Tyr 1 5 10 15 Ile Arg Gly Leu Pro Ser Pro Tyr Ile Thr Pro Ala His Arg Arg Phe 20 25 30 Gln Gln Ala Cys Arg Lys Phe Ala Thr Glu Asn Leu Ile Gln His Ala 35 40 45 Leu Glu Trp Glu Arg Glu Gly Thr Val Pro Glu His Val Phe His Thr 50 55 60 Phe Cys Lys His Asn Met Leu Leu Pro Asn Met Pro Ala Pro Leu Pro 65 70 75 80 Val Asp Trp Leu Lys Arg Leu Gly Ile Asn Asp Ile Leu Gly Val Lys 85 90 95 Val Glu Asp Trp Asp Tyr Ile Tyr Thr Gly Ile Tyr Cys Asp Glu Met 100 105 110 Ala Arg Ser Gly Leu Ser Gly Pro Ser Gly Ser Leu Asn Ala Gly Phe 115 120 125 Ala Phe Gly Ile Ala Pro Ile Tyr Lys Phe Gly Ser Thr Glu Leu Gln 130 135 140 Glu Arg Phe Leu Pro Glu Leu Leu Thr Gly Lys Lys Arg Gly Cys Ile 145 150 155 160 Ala Ile Thr Glu Pro Glu Ala Gly Ser Asp Val Ala Asn Ile Thr Thr 165 170 175 Thr Ala Val Lys Ser Ala Asp Gly Gln His Tyr Ile Leu Asn Gly Ser 180 185 190 Lys Lys Trp Ile Thr Asn Gly Ile Trp Ser Asp Tyr Ala Thr Met Ala 195 200 205 Val Arg Thr Gly Gly Pro Gly Ala Ala Gly Leu Ser Val Leu Val Val 210 215 220 Pro Leu Lys Gly His Pro Gly Val Ser Met Arg Arg Leu Lys Val Ser 225 230 235 240 Gly Gln Ile Thr Gly Gly Thr Thr Tyr Ile Glu Leu Asp Asp Val Lys 245 250 255 Val Pro Val Ser Asn Ile Ile Gly Lys Glu Gly Asp Gly Met Arg Ile 260 265 270 Ile Met Thr Asn Phe Asn His Glu Arg Leu Val Ile Ala Val Gly Val 275 280 285 Thr Arg Gln Ala Arg Val Ala Leu Ser Ala Ala Phe Ser Tyr Cys Leu 290 295 300 Lys Arg Glu Ala Phe Gly Lys Thr Leu Met Asp Gln Pro Val Val Arg 305 310 315 320 His Arg Leu Ala Lys Ala Gly Ala Glu Leu Glu Ser Met Trp Ala Trp 325 330 335 Val Glu Gln Ile Leu Tyr Gln Leu Val His Leu Ser Lys Glu Glu Gly 340 345 350 Asp Arg Gln Leu Gly Gly Leu Thr Ala Leu Ala Lys Ala Lys Ser Ala 355 360 365 Met Val Leu Asn Glu Cys Ala Gln Thr Ala Val Leu Leu Phe Gly Gly 370 375 380 Asn Gly Phe Thr Lys Thr Gly Gln Gly Glu Leu Val Glu Ala Ile Leu 385 390 395 400 Arg Asp Val Pro Gly Ala Arg Ile Pro Gly Gly Ser Glu Asp Val Leu 405 410 415 Leu Asp Leu Ser Val Arg Gln Leu Val Lys Leu Tyr Gln Ala Glu Glu 420 425 430 Lys Lys Leu Ser Lys Asn Ala Lys Ile 435 440 52439PRTPenicillium chrysogenum 52Met Tyr Arg Ser Gln Ile Gln Arg Ala Leu Arg Ser Gln Trp Pro Ala 1 5 10 15 Leu Arg Gln Leu Gln Cys Arg Thr Gly Leu Ser Pro Arg Ala Arg Ala 20 25 30 Ala Phe Ser Thr Ser Gly Arg Arg Asp Ile Met Gly Met Thr Gly Phe 35 40 45 Thr Asp Glu Gln Leu Thr Val Arg Glu Ala Ile Ser His Ile Cys Ser 50 55 60 Arg Phe Pro Asn Thr Tyr Trp Gln Glu Arg Asp Gln Gln Glu Lys Asp 65 70 75 80 Pro Lys Glu Phe His Ala Ala Leu Ala Lys Asp Gly Trp Leu Gly Ile 85 90 95 Ala Leu Pro Glu Ser Leu Gly Gly Ala Gly Leu Gly Ile Ser Glu Ala 100 105 110 Thr Met Met Met Gln Thr Ile Thr Gln Ser Gly Ala Gly Met Ala Gly 115 120 125 Ala Gln Ala Ile His Ala Asn Val Tyr Ala Thr Gln Pro Leu Ala Lys 130 135 140 Phe Gly Thr Lys Glu Gln Leu Glu Thr Thr Ile Pro Asn Ile Ile Asn 145 150 155 160 Gly Thr Trp Arg Thr Cys Phe Gly Val Thr Glu Pro Asn Thr Gly Leu 165 170 175 Glu Thr Leu Lys Leu Thr Thr Leu Ala Ser Lys Thr Asp Asp Gly Tyr 180 185 190 Ser Val Thr Gly Gln Lys Ile Trp Ile Thr Cys Ala Gln Val Ala Ser 195 200 205 Lys Met Ile Leu Leu Ala Arg Thr Thr Pro Leu Glu Glu Val Lys Lys 210 215 220 Ser Ser Glu Gly Leu Ser Leu Phe Cys Ile Asp Ile Asp Arg Glu Asn 225 230 235 240 Pro Gly Leu Asp Leu Arg Lys Ile Lys Lys Met Gly Gly Arg Ala Val 245 250 255 Asp Ala Asn Glu Val Phe Phe Asp His Tyr Lys Ile Pro Ala Asn Thr 260 265 270 Leu Ile Gly Glu Glu Asn Gln Gly Phe Lys Ile Ile Leu His Gly Met 275 280 285 Asn Ala Glu Arg Cys Leu Leu Ala Gly Glu Ala Leu Gly Leu Gly Tyr 290 295 300 Ala Ala Leu Glu Lys Ala Ser Gln Tyr Ala Lys Asp Arg Val Val Phe 305 310 315 320 Gly Arg Pro Ile Gly Gln Asn Gln Gly Val Ala His Pro Leu Ala Asp 325 330 335 Ala Phe Met Lys Leu Glu Ala Ala Lys Leu Ala Thr Tyr His Ala Ala 340 345 350 Arg Leu Tyr Asp Thr Asn Asp Gly Ser Val Pro Phe His Glu Ile Gly 355 360 365 Val Ala Cys Asn Ser Ala Lys Tyr Leu Ala Ala Glu Ala Ala Phe Thr 370 375 380 Ala Cys Glu Arg Ala Val Leu Ala His Gly Gly Met Gly Tyr Ala Val 385 390 395 400 Glu Tyr Asp Val Glu Arg Tyr Met Arg Glu Cys Phe Val Pro Arg Ile 405 410 415 Ala Pro Val Ser Arg Glu Met Ile Leu Asn Tyr Val Ser Glu Lys Val 420 425 430 Leu Asp Leu Pro Arg Ser Tyr 435 53446PRTPenicillium chrysogenum 53Met Ser Ala Ser Ser Arg Ile Pro Pro Ile Ala Gln Pro Phe Val Ser 1 5 10 15 Glu His Ala Lys Arg Thr Leu Asp Leu Val Glu Glu Phe Val Glu Lys 20 25 30 Asp Cys Ile Pro Ala Asp Thr Val Phe Ser Ala Gln Leu Gly Glu Gly 35 40 45 Glu Lys Arg Trp Thr Thr Thr Pro Thr Val Leu Glu Gly Leu Lys Glu 50 55 60 Lys Ala Lys Lys Leu Gly Leu Trp Asn Met Phe Leu Pro Lys Asn His 65 70 75 80 Phe Thr Gln Gly Ala Gly Phe Ser Asn Leu Glu Tyr Gly Leu Met Ala 85 90 95 Glu Leu Leu Gly Lys Ser Lys Val Ala Ser Glu Ala Thr Asn Asn Ala 100 105 110 Ala Pro Asp Thr Gly Asn Met Glu Val Phe Ala Lys Tyr Gly Asn Asp 115 120 125 Ala Gln Lys Lys Gln Trp Leu Ala Pro Leu Leu Glu Gly Lys Ile Arg 130 135 140 Ser Ala Phe Leu Met Thr Glu Pro Asp Val Ala Ser Ser Asp Ala Thr 145 150 155 160 Asn Ile Glu Leu Asn Ile Arg Arg Glu Gly Asn Glu Tyr Val Leu Asn 165 170 175 Gly Ser Lys Trp Trp Ser Ser Gly Ala Gly Asp Pro Arg Cys Ala Ile 180 185 190 Tyr Leu Val Met Gly Lys Thr Asp Pro Thr Asn Pro Asp Thr Tyr Lys 195 200 205 Gln Gln Ser Val Ile Leu Val Pro Ala Gly Leu Pro Gly Ile Thr Val 210 215 220 His Arg Met Leu Thr Val Tyr Gly Tyr Asp Asp Ala Pro His Gly His 225 230 235 240 Gly His Ile Thr Phe Lys Asp Val Arg Val Pro Ala Ser Asn Met Val 245 250 255 Leu Gly Glu Gly Arg Gly Phe Glu Ile Ile Gln Gly Arg Leu Gly Pro 260 265 270 Gly Arg Ile His His Ala Met Arg Ala Ile Gly Ala Ala Glu Arg Ala 275 280 285 Leu Glu Trp Leu Ile Ala Arg Val Asn Asp Glu Arg Lys Met Thr Phe 290 295 300 Gly Lys Pro Leu Val Ala His Gly Val Ile Leu Glu Trp Ile Ala Lys 305 310 315 320 Ser Arg Ile Glu Val Asp Ala Ala Arg Leu Ile Val Leu Asn Ala Ala 325 330 335 Ile Lys Ile Asp Gln Gly Asp Ala Lys Ser Ala Leu Lys Glu Ile Ala 340 345 350 Gln Ala Lys Val Leu Val Pro Gln Thr Ala Leu Thr Ile Ile Asp Arg 355 360 365 Ala Val Gln Ala Tyr Gly Ala Ala Gly Val Cys Gln Asp Thr Pro Leu 370 375 380 Ala Tyr Leu Trp Ala Gly Ile Arg Thr Leu Arg Ile Ala Asp Gly Pro 385 390 395 400 Asp Glu Val His Leu Gln Gln Leu Gly Lys Arg Glu Asn Lys Ala Arg 405 410 415 Lys Asp Ala Val Thr Ala Lys Leu Asn Trp Gln Arg Glu Glu Ala Asp 420 425 430 Arg Leu Leu Ala Ala Ser Gly Phe Lys Pro Lys Ser His Leu 435 440 445 54513PRTPenicillium chrysogenum 54Met Pro Ser Glu Thr Leu Thr Arg Ala Glu Val Ala Lys His Asn Thr 1 5 10 15 Glu Asp Ser Leu Trp Cys Ile Ile Asp His Gln Val Tyr Asp Leu Thr 20 25 30 Asp Phe Val Asp Ala His Pro Gly Gly Gly Val Val Leu Ala Gln Val 35 40 45 Ala Gly Lys Asp Ala Thr Ser Asp Phe Tyr Asn Leu His Arg Gln Glu 50 55 60 Val Leu Glu Lys Tyr Arg Asp Gln Leu Cys Ile Gly Val Val Glu Gly 65 70 75 80 Glu Lys Pro Glu Val Ile Arg Pro Phe Pro Gly Ala Leu Ser Pro Val 85 90 95 Pro Tyr Ala Glu Pro Leu Trp Leu Arg Pro Gln Phe Lys Ser Pro Tyr 100 105 110 Tyr Lys Glu Thr His Arg Asn Leu Gln Lys Ala Ile Arg Glu Phe Thr 115 120 125 Asp Lys Tyr Val Thr Pro Glu Ala Gln Glu Lys Glu Gln Asp Gly Ser 130 135 140 Tyr Ile Ser Gln Glu Leu Ile Asn Arg Met Ala Glu Thr Asn Ile Leu 145 150 155 160 Ala Met Arg Leu Gly Pro Gly Lys His Leu His Gly Arg Thr Leu Leu 165 170 175 Gly Gly Val Val Asp Gly Lys Glu Phe Asp Tyr Leu His Asp Met Ile 180 185 190 Ile Val Gln Glu Met Val Arg Ala Asn Ala Arg Gly Phe Gln Asp Gly 195 200 205 Asn Met Ala Gly Met Ala Ile Ser Leu Thr Ala Val Gln Gln Trp Leu 210 215 220 His Asp Pro Val Leu Lys Glu Arg Leu Asn Asp Glu Val Leu Ser Gly 225 230 235 240 Arg Lys Lys Met Cys Leu Ala Ile Thr Glu Ala Phe Ala Gly Ser Asp 245 250 255 Val Ala Gly Leu Lys Thr Thr Ala Glu Lys Thr Pro Asp Gly Lys His 260 265 270 Tyr Ile Val Asn Gly Thr Lys Lys Trp Ile Thr Asn Gly Met Phe Ala 275 280 285 Asp Tyr Phe Val Thr Gly Cys Arg Thr Glu Lys Gly Phe Ser Val Leu 290 295 300 Leu Ile Pro Arg Gly Glu Gly Val Glu Thr Lys Gln Ile Lys Thr Ser 305 310 315 320 Tyr Ser Thr Ala Ala Ala Thr Ala Phe Val Glu Phe Asp Asn Val Lys 325 330 335 Val Pro Val Gln Asn Leu Leu Gly Glu Glu His Lys Gly Phe Ile Val 340 345 350 Ile Met Ser Asn Phe Asn His Glu Arg Phe Met Met Val Ala Ala Val 355 360 365 Val Arg Met Ser Met Met Val Val Glu Glu Thr Met Lys Trp Ser Asn 370 375 380 Gln Arg Ile Val Phe Gly Lys Lys Leu Ile Glu Gln Pro Val Ile Arg 385 390 395 400 Gln Lys Ile Ala Arg Met Ile Ser Leu Ala Glu Ser Asn Gln Ala Trp 405 410 415 Leu Glu Ser Ile Ala Tyr Gln Met Cys Asn Met Thr Tyr Ala Gln Gln 420 425 430 Ala Lys Leu Leu Gly Gly Pro Ile Gly Leu Leu Lys Ser His Cys Thr 435 440 445 Gln Ala Ala Gly Glu Ile Ala Ser Leu Ala Thr Asn Ile Phe Gly Gly 450 455 460 Arg Gly Leu Thr Gln Ser Gly Met Gly Lys Val Ile Glu Met Phe His 465 470 475 480 Arg Thr Tyr Lys Phe Asp Ala Ile Leu Gly Gly Thr Glu Glu Ile Leu 485 490 495 Ala Asp Leu Gly Val Arg Gln Ala Met Lys Asn Phe Pro Lys Ser Met 500 505 510 Leu 55436PRTPenicillium chrysogenum 55Met Ala Ser Ile Ile Arg Ala Leu Arg Pro Leu Ser Arg Asn Pro Ser 1 5 10 15 Val Arg Leu Ala Gly Lys Arg Leu Ala Ala Gly Arg Pro Val Gln Ser 20 25 30 Ala Tyr Ala Phe Ser Thr Thr Pro Arg Arg Arg Glu Val Asp Leu Ser 35 40 45 Glu Leu Thr Pro Thr Pro Ile Thr Leu Leu Ser Glu Thr Glu Ser Leu 50 55 60 Met Ala Asp Ser Val Ser Lys Phe Ala Val Glu Gln Ile Gly Pro Lys 65 70 75 80 Val Arg Glu Met Asp Glu Ala Glu Thr Met Asp Ala Lys Val Val Glu 85 90 95 Gln Leu Phe Glu Gln Gly Leu Met Gly Ile Glu Val Pro Glu Glu Phe 100 105 110 Gly Gly Ala Gly Met Asn Phe Thr Ala Ala Ile Val Ala Ile Glu Glu 115 120 125 Leu Ala Arg Val Asp Pro Ser Val Ser Val Leu Val Asp Val His Asn 130 135 140 Thr Leu Val Asn Thr Ala Ile Met Lys Tyr Gly Asp Ala Lys Ala Gln 145 150 155 160 Arg Thr Trp Leu Pro Lys Leu Thr Thr Gly Thr Val Gly Ser Phe Cys 165 170 175 Leu Ser Glu Pro Ala Ser Gly Ser Asp Ala Phe Ala Leu Gln Thr Lys 180 185 190 Ala Glu Lys Thr Ala Asp Gly Tyr Lys Leu Asn Gly Ser Lys Met Trp 195 200 205 Ile Thr Asn Ser Met Glu Ala Gly Val Phe Ile Val Phe Ala Asn Ile 210 215 220 Asp Pro Ser Lys Gly Tyr Lys Gly Ile Thr Ala Phe Ile Val Glu Lys 225 230 235 240 Asp Thr Pro Gly Phe Ser Ile Ala Lys Lys Glu Lys Lys Leu Gly Ile 245 250 255 Arg Ala Ser Ser Thr Cys Val Leu Asn Phe Asp Asp Cys Val Ile Pro 260 265 270 Lys Ser Asn Leu Leu Gly Glu Glu Gly Gln Gly Tyr Lys Tyr Ala Ile 275 280 285 Ser Val Leu Asn Glu Gly Arg Ile Gly Ile Ala Ala Gln Met Thr Gly 290 295 300 Leu Ala Leu Gly Ala Trp Glu Asn Ala Ala Arg Tyr Val Trp Asn Asp 305 310 315 320 Arg Arg Gln Phe Gly Glu Leu Ile Gly Asn Phe Gln Gly Met Gln His 325 330 335 Gln Ile Ala Gln Ala Tyr Thr Glu Ile Ala Ala Ala Arg Ala Leu

Val 340 345 350 Tyr Asn Ala Ala Arg Lys Lys Glu Ala Gly Gln Asp Phe Val Gln Asp 355 360 365 Ala Ala Met Ala Lys Leu Tyr Ala Ser Gln Val Ala Gly Arg Val Ser 370 375 380 Ser Ser Ala Val Glu Trp Met Gly Gly Met Gly Phe Val Arg Glu Gly 385 390 395 400 Ile Ala Glu Lys Met Phe Arg Asp Ser Lys Ile Gly Ala Ile Tyr Glu 405 410 415 Gly Thr Ser Asn Ile Gln Leu Gln Thr Ile Ala Lys Leu Leu Gln Lys 420 425 430 Gln Tyr Thr Asn 435 56429PRTPenicillium chrysogenum 56Met Ala Ser Leu Thr Leu Pro Ser Leu Leu Arg Thr Ser Thr Arg Ala 1 5 10 15 Val Arg Leu Asn Arg Thr Pro Ala Leu Thr Pro Cys Phe Arg Ser Ile 20 25 30 Ser Thr Lys His Pro Lys Gly Phe Ile Pro Pro Ser Glu Asp Asp Leu 35 40 45 Leu Glu Leu Arg Glu Arg Val Gln Asp Phe Thr Arg Arg Glu Ile Pro 50 55 60 Ala Asp Val Ala Ala Arg Thr Asp Glu Gln Asn Glu Phe Pro Ala Glu 65 70 75 80 Met Trp Arg Lys Met Gly Asp Ala Gly Phe Leu Gly Val Thr Ala Asn 85 90 95 Glu Glu Tyr Gly Gly Leu Gly Met Gly Tyr Gln Ala His Cys Val Val 100 105 110 Met Glu Glu Ile Ser Arg Ala Ser Gly Ser Ile Gly Leu Ser Tyr Ala 115 120 125 Ala His Ser Gln Leu Cys Val Asn Gln Leu Ser Leu Asn Gly Ser Thr 130 135 140 Glu Gln Lys Glu Arg Ile Leu Pro Gly Leu Leu Ser Gly Glu Lys Val 145 150 155 160 Gly Ala Leu Ala Met Ser Glu His Ser Ala Gly Ser Asp Val Val Ser 165 170 175 Met Lys Thr Thr Ala Lys Glu Val Asp Gly Gly Trp Leu Leu Asn Gly 180 185 190 Thr Lys Met Trp Ile Thr Asn Gly Pro Asp Ala Asp Tyr Ile Val Val 195 200 205 Tyr Ala Lys Thr Glu Pro Glu Leu Gly Ser Lys Gly Ile Thr Ala Phe 210 215 220 Leu Val Glu Lys Asp Phe Lys Gly Phe Ser Cys Ala Arg Lys Leu Asp 225 230 235 240 Lys Leu Gly Met Arg Gly Ser Asn Thr Gly Glu Leu Ile Phe Glu Asp 245 250 255 Val Phe Val Pro Arg Glu Asn Leu Leu Gly Glu Val Asn Arg Gly Val 260 265 270 Arg Val Leu Met Glu Gly Leu Asp Leu Glu Arg Leu Val Leu Ser Ala 275 280 285 Gly Pro Leu Gly Ile Met Gln Ala Ala Leu Asp Leu Val Leu Pro Tyr 290 295 300 Thr His Val Arg Lys Gln Phe Gly Ala Pro Ile Ala His Asn Gln Leu 305 310 315 320 Val Gln Gly Lys Leu Ala Asp Met Tyr Thr Lys Leu Ala Ala Ser Arg 325 330 335 Ala Tyr Thr Tyr Ala Thr Ala Arg Gln Val Asp Asn Ala Ala Val Glu 340 345 350 Pro Gly Glu Leu Thr Val Arg Thr Gln Asp Cys Ala Gly Ala Ile Leu 355 360 365 Tyr Ala Ala Glu Arg Ala Thr Glu Cys Thr Leu Asp Ala Ile Gln Leu 370 375 380 Met Gly Gly Ser Gly Tyr Ile Asn Glu Ile Pro Ala Gly Arg Leu Leu 385 390 395 400 Arg Asp Ala Lys Leu Tyr Glu Ile Gly Ala Gly Thr Ser Glu Ile Arg 405 410 415 Arg Met Val Ile Gly Arg Ala Phe Asn Lys Glu Tyr Ala 420 425 57405PRTPenicillium Chrysogenum 57Met Phe Ser Arg Ser Val Leu Gln Thr Ala Thr Arg Ser Val Arg Pro 1 5 10 15 Ala Ser Ala Arg Ala Val Pro Gln Leu Gly Lys Ala Pro Phe Gly Arg 20 25 30 Arg Tyr Val Ser Val Tyr Gly Tyr Thr Gln Ala Lys Ala Leu Ile Tyr 35 40 45 Ser Lys Tyr Gly Glu Pro Lys Asp Val Leu Arg Leu His Lys His Ser 50 55 60 Ile Ser Ala Pro His Ala Thr Gln Val Asn Leu Arg Leu Leu Thr Ala 65 70 75 80 Pro Met Asn Pro Ala Asp Val Asn Gln Ile Gln Gly Val Tyr Pro Ser 85 90 95 Lys Pro Pro Phe Gln Thr Glu Leu Gly Asn Val Glu Pro Ala Ala Val 100 105 110 Gly Gly Asn Glu Gly Ala Phe Glu Val Leu Ser Thr Gly Ala Gly Val 115 120 125 Lys Asn Leu Ser Lys Gly Asp Trp Val Ile Met Lys Arg Thr Gly Leu 130 135 140 Gly Thr Trp Arg Thr His Ala Gln Leu Asp Glu Ser Gln Leu Ile Lys 145 150 155 160 Val Glu Asn Lys Glu Gly Leu Thr Pro Leu Gln Val Gly Thr Val Ser 165 170 175 Val Asn Pro Val Thr Ala Tyr Arg Met Leu Arg Asp Phe Cys Glu Trp 180 185 190 Asp Trp Met Arg Ala Gly Glu Glu Trp Val Ile Gln Asn Gly Ala Asn 195 200 205 Ser Gly Val Gly Arg Ala Ala Ile Gln Leu Gly Arg Glu Trp Gly Ile 210 215 220 Lys Thr Leu Asn Val Ile Arg Gln Arg Lys Thr Pro Glu Glu Thr Glu 225 230 235 240 Ala Leu Lys Gln Glu Leu Arg Asp Leu Gly Ala Thr Val Val Ile Thr 245 250 255 Glu Glu Glu Met Leu Asn Gly Asn Phe Arg Asp Met Val His Glu Phe 260 265 270 Thr Arg Lys Gly Arg Glu Pro Ile Arg Leu Ala Leu Asn Cys Val Gly 275 280 285 Gly Lys Asn Ala Thr Ala Leu Ala Lys Thr Leu Ala Pro Asp Ser His 290 295 300 Met Val Thr Tyr Gly Ala Met Ser Lys Gln Pro Val Ala Leu Pro Ser 305 310 315 320 Gly Leu Leu Ile Phe Lys Asn Leu Ala Phe Asp Gly Phe Trp Val Ser 325 330 335 Lys Trp Gly Asp Lys Asn Pro Gln Leu Lys Glu Ser Thr Ile Lys Asp 340 345 350 Val Leu Gln Leu Thr Arg Ser Gly Lys Phe Lys Asp Ile Pro Val Asp 355 360 365 Glu Val Lys Trp Asn Trp Glu Thr Glu Gly Pro Glu Leu Ala Glu Ser 370 375 380 Val Gln Gly Thr Leu Gly Gly Tyr Arg Ser Gly Lys Gly Val Phe Thr 385 390 395 400 Phe Ser Gly Gly Asp 405 58373PRTBos taurus 58Met Trp Val Cys Gly Ala Leu Cys Arg Thr Arg Ala Pro Ala Gln Leu 1 5 10 15 Gly Gln Arg Leu Leu Pro Glu Ser Arg Arg Arg Arg Pro Ala Ser Ala 20 25 30 Ser Phe Ser Ala Ser Ala Glu Pro Ser Arg Val Arg Ala Leu Val Tyr 35 40 45 Gly His His Gly Asp Pro Ala Lys Val Val Glu Leu Lys Asn Leu Glu 50 55 60 Leu Ala Ala Val Gly Gly Ser His Val His Val Lys Met Leu Ala Ala 65 70 75 80 Pro Ile Asn Pro Ser Asp Ile Asn Met Ile Gln Gly Asn Tyr Gly Leu 85 90 95 Leu Pro Gln Leu Pro Ala Val Gly Gly Asn Glu Gly Val Gly Gln Val 100 105 110 Val Ala Val Gly Ser Gly Val Thr Gly Val Lys Pro Gly Asp Trp Val 115 120 125 Ile Pro Ala Asn Pro Gly Leu Gly Thr Trp Arg Thr Glu Ala Val Phe 130 135 140 Gly Glu Glu Glu Leu Ile Thr Val Pro Ser Asp Ile Pro Leu Gln Ser 145 150 155 160 Ala Ala Thr Leu Gly Val Asn Pro Cys Thr Ala Tyr Arg Met Leu Val 165 170 175 Asp Phe Glu Arg Leu Arg Pro Arg Asp Ser Ile Ile Gln Asn Ala Ser 180 185 190 Asn Ser Gly Val Gly Gln Ala Val Ile Gln Ile Ala Ala Ala Arg Gly 195 200 205 Leu Arg Thr Ile Asn Val Leu Arg Asp Thr Pro Asp Leu Gln Lys Leu 210 215 220 Thr Asp Thr Leu Lys Asn Leu Gly Ala Asn His Val Val Thr Glu Glu 225 230 235 240 Glu Leu Arg Lys Pro Glu Met Lys Ser Phe Phe Lys Asp Val Pro Gln 245 250 255 Pro Arg Leu Ala Leu Asn Cys Val Gly Gly Lys Ser Ser Thr Glu Leu 260 265 270 Leu Arg His Leu Ala Pro Gly Gly Thr Met Val Thr Tyr Gly Gly Met 275 280 285 Ala Lys Gln Pro Val Ile Ala Ser Val Ser Gln Leu Ile Phe Lys Asp 290 295 300 Leu Lys Leu Arg Gly Phe Trp Leu Ser Gln Trp Lys Lys Asp His Ser 305 310 315 320 Pro Asp Gln Phe Lys Glu Leu Ile Leu Thr Leu Cys Asp Leu Ile Arg 325 330 335 Arg Gly Gln Leu Thr Ala Pro Ala Cys Ser Glu Val Pro Leu Gln Asp 340 345 350 Tyr Leu Cys Ala Leu Glu Ala Ser Thr Gln Pro Phe Val Ser Ser Lys 355 360 365 Gln Ile Leu Thr Met 370 59302PRTCavia sp. 59Met Gly Ser Trp Thr Lys Cys Gln Ser Cys Leu Ala Pro Gly Leu Leu 1 5 10 15 Gln Asn Arg Ala Ala Ile Val Thr Gly Gly Gly Thr Gly Ile Gly Lys 20 25 30 Ala Ile Ala Lys Glu Leu Leu His Leu Gly Cys Asn Val Val Ile Ala 35 40 45 Ser Arg Lys Phe Asp Arg Leu Arg Ala Ala Ala Glu Glu Leu Lys Ala 50 55 60 Thr Leu Pro Pro Ser Asn Lys Ala Glu Val Thr Pro Ile Gln Cys Asn 65 70 75 80 Ile Arg Lys Glu Glu Glu Val Asn Asn Leu Met Lys Ser Thr Leu Ala 85 90 95 Leu Tyr Gly Lys Ile Asp Phe Leu Val Asn Asn Gly Gly Gly Gln Phe 100 105 110 Trp Ser Ser Pro Glu His Ile Ser Ser Lys Gly Trp His Ala Val Ile 115 120 125 Glu Thr Asn Leu Thr Gly Thr Phe Tyr Met Cys Lys Ala Ala Tyr Asn 130 135 140 Ser Trp Met Lys Glu His Gly Gly Ala Ile Val Asn Ile Ile Ile Leu 145 150 155 160 Leu Asn Gly Gln Pro Phe Val Ala His Ser Gly Ala Ala Arg Gly Gly 165 170 175 Val Tyr Asn Leu Thr Lys Ser Leu Ala Leu Gly Trp Ala Arg Ser Gly 180 185 190 Ile Arg Ile Asn Cys Val Ala Pro Gly Thr Val Tyr Ser Gln Thr Ala 195 200 205 Met Asp Asn Tyr Gly Asp Met Gly Lys Thr Leu Phe Ala Asp Ala Phe 210 215 220 Gln Lys Ile Pro Ala Lys Arg Leu Gly Val Pro Glu Glu Val Ser Ser 225 230 235 240 Leu Val Cys Phe Leu Leu Ser Pro Ala Ala Ser Phe Ile Thr Gly Gln 245 250 255 Leu Val Asn Val Asp Gly Gly Gln Ser Leu Tyr Cys Gln Asn His Asp 260 265 270 Ile Pro Asp His Asp Asn Trp Pro Glu Gly Val Gly Asp Leu Ser Thr 275 280 285 Val Lys Lys Met Lys Glu Ser Phe Lys Gln Lys Ala Lys Leu 290 295 300 60386PRTCandida tropicalis 60Met Tyr Ser Val Leu Lys Gln Ser Ile Arg Pro Arg Leu Leu Ala Thr 1 5 10 15 His Asn Gln Phe Arg Thr Met Ile Thr Ala Gln Ala Val Leu Tyr Thr 20 25 30 Gln His Gly Glu Pro Lys Asp Val Leu Phe Thr Gln Ser Phe Glu Ile 35 40 45 Asp Asp Asp Asn Leu Ala Pro Asn Glu Val Ile Val Lys Thr Leu Gly 50 55 60 Ser Pro Val Asn Pro Ser Asp Ile Asn Gln Ile Gln Gly Val Tyr Pro 65 70 75 80 Ser Lys Pro Ala Lys Thr Thr Gly Phe Gly Thr Thr Glu Pro Ala Ala 85 90 95 Pro Cys Gly Asn Glu Gly Leu Phe Glu Val Ile Lys Val Gly Ser Asn 100 105 110 Val Ser Ser Leu Glu Ala Gly Asp Trp Val Ile Pro Ser His Val Asn 115 120 125 Phe Gly Thr Trp Arg Thr His Ala Leu Gly Asn Asp Asp Asp Phe Ile 130 135 140 Lys Leu Pro Asn Pro Ala Gln Ser Lys Ala Asn Gly Lys Pro Asn Gly 145 150 155 160 Leu Thr Ile Asn Gln Gly Ala Thr Ile Ser Val Asn Pro Leu Thr Ala 165 170 175 Tyr Leu Met Leu Thr His Tyr Val Lys Leu Thr Pro Gly Lys Asp Trp 180 185 190 Phe Ile Gln Asn Gly Gly Thr Ser Ala Val Gly Lys Tyr Ala Ser Gln 195 200 205 Ile Gly Lys Leu Leu Asn Phe Asn Ser Ile Ser Val Ile Arg Asp Arg 210 215 220 Pro Asn Leu Asp Glu Val Val Ala Ser Leu Lys Glu Leu Gly Ala Thr 225 230 235 240 Gln Val Ile Thr Glu Asp Gln Asn Asn Ser Arg Glu Phe Gly Pro Thr 245 250 255 Ile Lys Glu Trp Ile Lys Gln Ser Gly Gly Glu Ala Lys Leu Ala Leu 260 265 270 Asn Cys Val Gly Gly Lys Ser Ser Thr Gly Ile Ala Arg Lys Leu Asn 275 280 285 Asn Asn Gly Leu Met Leu Thr Tyr Gly Gly Met Ser Phe Gln Pro Val 290 295 300 Thr Ile Pro Thr Ser Leu Tyr Ile Phe Lys Asn Phe Thr Ser Ala Gly 305 310 315 320 Phe Trp Val Thr Glu Leu Leu Lys Asn Asn Lys Glu Leu Lys Thr Ser 325 330 335 Thr Leu Asn Gln Ile Ile Ala Trp Tyr Glu Glu Gly Lys Leu Thr Asp 340 345 350 Ala Lys Ser Ile Glu Thr Leu Tyr Asp Gly Thr Lys Pro Leu His Glu 355 360 365 Leu Tyr Gln Asp Gly Val Ala Asn Ser Lys Asp Gly Lys Gln Leu Ile 370 375 380 Thr Tyr 385 61379PRTClostridium kluyveri 61Met Asp Phe Thr Leu Thr Asn Glu Gln Lys Phe Val Glu Gln Met Val 1 5 10 15 Ser Glu Phe Thr Glu Asn Glu Val Lys Pro Ile Ala Ala Glu Ile Asp 20 25 30 Glu Thr Glu Arg Phe Pro Leu Glu Thr Val Glu Lys Phe Ala Lys Tyr 35 40 45 Gly Met Met Gly Met Pro Phe Pro Val Glu Tyr Gly Gly Ser Gly Thr 50 55 60 Asp Tyr Leu Ser Tyr Ile Ile Ala Val Glu Gly Leu Ala Lys Ser Cys 65 70 75 80 Thr Ser Ser Ser Thr Ile Leu Ser Ala His Thr Ser Leu Cys Ala Ala 85 90 95 Pro Ile Tyr Asp Trp Gly Thr Glu Glu Gln Lys Gln Lys Tyr Leu Val 100 105 110 Pro Leu Ala Lys Gly Glu Lys Leu Gly Ala Phe Gly Leu Thr Glu Pro 115 120 125 Asn Ala Gly Thr Asp Ala Ala Gly Gln Gln Thr Thr Ala Val Leu Glu 130 135 140 Gly Asp His Tyr Val Leu Asn Gly Gln Lys Ile Phe Ile Thr Asn Gly 145 150 155 160 Ala Tyr Ala Asp Thr Phe Val Ile Phe Ala Met Thr Asp Arg Ser Lys 165 170 175 Gly Thr Arg Gly Ile Thr Ala Phe Ile Val Glu Lys Asp Phe Pro Gly 180 185 190 Phe Ser Ile Gly Lys Ser Glu Asp Lys Leu Gly Ile Arg Ala Ser Ser 195 200 205 Thr Thr Glu Leu Ile Phe Glu Asn Cys Ile Val Pro Lys Glu Asn Met 210 215 220 Leu Gly Lys Glu Gly Lys Gly Phe Thr Val Ala Met His Thr Leu Asp 225 230 235 240 Gly Gly Arg Ile Gly Ile Ala Ala Gln Ala Leu Gly Leu Ala Glu Gly 245 250 255 Ala Leu Ala Glu Ala Leu Asn Tyr Met Lys Glu Arg Lys Gln Phe Gly 260 265 270 Lys Ala Leu Tyr Lys Phe Gln Gly Leu Ala Trp Met Val Ala Glu Leu 275 280 285 Asp Thr Lys Ile Glu Ala Val Lys Gln Leu Val Tyr Lys Ala Ala Val 290

295 300 Asn Lys Gln Met Gly Leu Pro Tyr Ser Val Glu Ala Ala Arg Ala Lys 305 310 315 320 Leu Ala Ala Ala Thr Val Ala Met Glu Thr Thr Thr Lys Val Val Gln 325 330 335 Ile Phe Gly Gly Tyr Gly Phe Thr Lys Asp Tyr Pro Val Glu Arg Met 340 345 350 Met Arg Asp Ala Lys Ile Thr Glu Ile Tyr Glu Gly Thr Ser Gln Val 355 360 365 Gln Lys Met Val Ile Ser Ala Asn Leu Phe Lys 370 375 62562PRTClostridium kluyveri 62Met Asn Phe Glu Leu Thr Lys Glu Gln Gln Met Ile Arg Asp Asn Val 1 5 10 15 Arg Lys Phe Ala Glu Ala Lys Ile Glu Pro Ile Ala Phe Gln Leu Asp 20 25 30 Glu Lys Asn Ile Phe Pro Glu Glu Ile Val Asn Glu Met Gly Asp Leu 35 40 45 Ser Ile Met Gly Leu Pro Tyr Pro Lys Glu Tyr Gly Gly Ala Gly Lys 50 55 60 Asp Val Leu Ser Tyr Ala Ile Ala Val Glu Glu Leu Ser Arg Val Asp 65 70 75 80 Ala Gly Val Gly Val Ile Leu Ser Ala His Thr Ser Leu Gly Thr Trp 85 90 95 Pro Ile Met Glu Phe Gly Thr Lys Glu Gln Lys Glu Lys Tyr Leu Val 100 105 110 Pro Leu Ala Ser Gly Lys Lys Ile Ala Ala Phe Gly Leu Thr Glu Pro 115 120 125 Asn Ala Gly Ser Asp Ala Gly Lys Thr Glu Thr Thr Ala Val Leu Glu 130 135 140 Gly Asp His Tyr Val Ile Asn Gly Ser Lys Val Phe Ile Thr Asn Ala 145 150 155 160 Asp Tyr Ala Asp Thr Tyr Val Ile Phe Ala Val Thr Thr Pro Gly Leu 165 170 175 Gly Thr Lys Gly Ile Ser Ala Phe Ile Ile Glu Lys Gly Met Asp Gly 180 185 190 Phe Thr Phe Gly Thr His Tyr Asn Lys Met Gly Ile Arg Ser Ser Ala 195 200 205 Thr Ala Glu Leu Leu Phe Lys Asn Leu Lys Val Pro Lys Tyr Asn Leu 210 215 220 Leu Gly Lys Glu Asn Glu Gly Phe Lys Ile Ala Met Gln Thr Leu Glu 225 230 235 240 Gly Gly Arg Ile Gly Ile Ala Ala Gln Ala Leu Gly Ile Ala Gln Gly 245 250 255 Ala Tyr Glu Lys Ala Leu Ser Tyr Ser Lys Glu Arg Val Gln Phe Gly 260 265 270 Lys Pro Ile Ser Arg Gln Gln Ser Ile Ala Phe Lys Leu Ala Asp Met 275 280 285 Ala Thr Lys Ile Arg Ala Ala Arg Phe Met Val Tyr Ser Ala Ala Val 290 295 300 Leu Lys Gln Glu His Lys Asn Tyr Gly Met Glu Ser Ala Met Ala Lys 305 310 315 320 Leu Tyr Ala Ser Asp Ile Cys Leu Glu Val Val Asn Asp Ala Val Gln 325 330 335 Ile Tyr Gly Gly Ser Gly Phe Ile Lys Gly Phe Pro Val Glu Arg Met 340 345 350 Tyr Arg Asp Ala Lys Ile Cys Thr Ile Tyr Glu Gly Thr Asn Glu Ile 355 360 365 Gln Arg Leu Ile Ile Ser Asn Asp Ile Leu Gly Lys Pro Lys Lys Glu 370 375 380 Pro Ile Glu Glu Asn Lys Glu Asn Lys Val Asn Lys Ala Lys Pro Ile 385 390 395 400 Thr Gly Asn Arg Arg Arg Val Ile Ile Lys Glu Gly Ser Pro Lys Glu 405 410 415 Lys Val Asp Ala Phe Leu Asn Tyr Ile Lys Ser Glu Asn Ile Asp Ile 420 425 430 Asn Lys Ser Glu Ala Ser Lys Gly Ser Ile Ala Asp Ala Asp Lys Val 435 440 445 Cys Ser Ile Gly Leu Gly Leu Lys Asp Lys Lys Asp Leu Pro Leu Ile 450 455 460 Gln Ser Leu Ala Asp Thr Val Gly Ala Glu Leu Gly Cys Ser Arg Pro 465 470 475 480 Val Ala Glu Glu Arg Glu Trp Leu Pro Leu Asp Arg Tyr Val Gly Ile 485 490 495 Ser Gly Gln Lys Phe Gly Gly Thr Phe Tyr Leu Ala Ile Gly Ile Ser 500 505 510 Gly Gln Val Gln His Leu Lys Gly Ile Glu Asn Ala Gly Ile Ile Thr 515 520 525 Ala Ile Asn Ile Asp Glu Asp Ala Pro Ile Phe Lys Ser Ser Asp Tyr 530 535 540 Gly Ile Val Gly Asp Leu Tyr Glu Ile Val Pro Leu Leu Ile Glu Ala 545 550 555 560 Leu Lys 63539PRTEuglena gracilis 63Met Ser Cys Pro Ala Ser Pro Ser Ala Ala Val Val Ser Ala Gly Ala 1 5 10 15 Leu Cys Leu Cys Val Ala Thr Val Leu Leu Ala Thr Gly Ser Asn Pro 20 25 30 Thr Ala Leu Ser Thr Ala Ser Thr Arg Ser Pro Thr Ser Leu Val Arg 35 40 45 Gly Val Asp Arg Gly Leu Met Arg Pro Thr Thr Ala Ala Ala Leu Thr 50 55 60 Thr Met Arg Glu Val Pro Gln Met Ala Glu Gly Phe Ser Gly Glu Ala 65 70 75 80 Thr Ser Ala Trp Ala Ala Ala Gly Pro Gln Trp Ala Ala Pro Leu Val 85 90 95 Ala Ala Ala Ser Ser Ala Leu Ala Leu Trp Trp Trp Ala Ala Arg Arg 100 105 110 Ser Val Arg Arg Pro Leu Ala Ala Leu Ala Glu Leu Pro Thr Ala Val 115 120 125 Thr His Leu Ala Pro Pro Met Ala Met Phe Thr Thr Thr Ala Lys Val 130 135 140 Ile Gln Pro Lys Ile Arg Gly Phe Ile Cys Thr Thr Thr His Pro Ile 145 150 155 160 Gly Cys Glu Lys Arg Val Gln Glu Glu Ile Ala Tyr Ala Arg Ala His 165 170 175 Pro Pro Thr Ser Pro Gly Pro Lys Arg Val Leu Val Ile Gly Cys Ser 180 185 190 Thr Gly Tyr Gly Leu Ser Thr Arg Ile Thr Ala Ala Phe Gly Tyr Gln 195 200 205 Ala Ala Thr Leu Gly Val Phe Leu Ala Gly Pro Pro Thr Lys Gly Arg 210 215 220 Pro Ala Ala Ala Gly Trp Tyr Asn Thr Val Ala Phe Glu Lys Ala Ala 225 230 235 240 Leu Glu Ala Gly Leu Tyr Ala Arg Ser Leu Asn Gly Asp Ala Phe Asp 245 250 255 Ser Thr Thr Lys Ala Arg Thr Val Glu Ala Ile Lys Arg Asp Leu Gly 260 265 270 Thr Val Asp Leu Val Val Tyr Ser Ile Ala Ala Pro Lys Arg Thr Asp 275 280 285 Pro Ala Thr Gly Val Leu His Lys Ala Cys Leu Lys Pro Ile Gly Ala 290 295 300 Thr Tyr Thr Asn Arg Thr Val Asn Thr Asp Lys Ala Glu Val Thr Asp 305 310 315 320 Val Ser Ile Glu Pro Ala Ser Pro Glu Glu Ile Ala Asp Thr Val Lys 325 330 335 Val Met Gly Gly Glu Asp Trp Glu Leu Trp Ile Gln Ala Leu Ser Glu 340 345 350 Ala Gly Val Leu Ala Glu Gly Ala Lys Thr Val Ala Tyr Ser Tyr Ile 355 360 365 Gly Pro Glu Met Thr Trp Pro Val Tyr Trp Ser Gly Thr Ile Gly Glu 370 375 380 Ala Lys Lys Asp Val Glu Lys Ala Ala Lys Arg Ile Thr Gln Gln Tyr 385 390 395 400 Gly Cys Pro Ala Tyr Pro Val Val Ala Lys Ala Leu Val Thr Gln Ala 405 410 415 Ser Ser Ala Ile Pro Val Val Pro Leu Tyr Ile Cys Leu Leu Tyr Arg 420 425 430 Val Met Lys Glu Lys Gly Thr His Glu Gly Cys Ile Glu Gln Met Val 435 440 445 Arg Leu Leu Thr Thr Lys Leu Tyr Pro Glu Asn Gly Ala Pro Ile Val 450 455 460 Asp Glu Ala Gly Arg Val Arg Val Asp Asp Trp Glu Met Ala Glu Asp 465 470 475 480 Val Gln Gln Ala Val Lys Asp Leu Trp Ser Gln Val Ser Thr Ala Asn 485 490 495 Leu Lys Asp Ile Ser Asp Phe Ala Gly Tyr Gln Thr Glu Phe Leu Arg 500 505 510 Leu Phe Gly Phe Gly Ile Asp Gly Val Asp Tyr Asp Gln Pro Val Asp 515 520 525 Val Glu Ala Asp Leu Pro Ser Ala Ala Gln Gln 530 535 64303PRTHomo sapiens 64Met Ala Ser Trp Ala Lys Gly Arg Ser Tyr Leu Ala Pro Gly Leu Leu 1 5 10 15 Gln Gly Gln Val Ala Ile Val Thr Gly Gly Ala Thr Gly Ile Gly Lys 20 25 30 Ala Ile Val Lys Glu Leu Leu Glu Leu Gly Ser Asn Val Val Ile Ala 35 40 45 Ser Arg Lys Leu Glu Arg Leu Lys Ser Ala Ala Asp Glu Leu Gln Ala 50 55 60 Asn Leu Pro Pro Thr Lys Gln Ala Arg Val Ile Pro Ile Gln Cys Asn 65 70 75 80 Ile Arg Asn Glu Glu Glu Val Asn Asn Leu Val Lys Ser Thr Leu Asp 85 90 95 Thr Phe Gly Lys Ile Asn Phe Leu Val Asn Asn Gly Gly Gly Gln Phe 100 105 110 Leu Ser Pro Ala Glu His Ile Ser Ser Lys Gly Trp His Ala Val Leu 115 120 125 Glu Thr Asn Leu Thr Gly Thr Phe Tyr Met Cys Lys Ala Val Tyr Ser 130 135 140 Ser Trp Met Lys Glu His Gly Gly Ser Ile Val Asn Ile Ile Val Pro 145 150 155 160 Thr Lys Ala Gly Phe Pro Leu Ala Val His Ser Gly Ala Ala Arg Ala 165 170 175 Gly Val Tyr Asn Leu Thr Lys Ser Leu Ala Leu Glu Trp Ala Cys Ser 180 185 190 Gly Ile Arg Ile Asn Cys Val Ala Pro Gly Val Ile Tyr Ser Gln Thr 195 200 205 Ala Val Glu Asn Tyr Gly Ser Trp Gly Gln Ser Phe Phe Glu Gly Ser 210 215 220 Phe Gln Lys Ile Pro Ala Lys Arg Ile Gly Val Pro Glu Glu Val Ser 225 230 235 240 Ser Val Val Cys Phe Leu Leu Ser Pro Ala Ala Ser Phe Ile Thr Gly 245 250 255 Gln Ser Val Asp Val Asp Gly Gly Arg Ser Leu Tyr Thr His Ser Tyr 260 265 270 Glu Val Pro Asp His Asp Asn Trp Pro Lys Gly Ala Gly Asp Leu Ser 275 280 285 Val Val Lys Lys Met Lys Glu Thr Phe Lys Glu Lys Ala Lys Leu 290 295 300 65303PRTMus musculus 65Met Gly Ser Trp Lys Thr Gly Gln Ser Tyr Leu Ala Ala Gly Leu Leu 1 5 10 15 Lys Asn Gln Val Ala Val Val Thr Gly Gly Gly Thr Gly Ile Gly Lys 20 25 30 Ala Val Ser Arg Glu Leu Leu His Leu Gly Cys Asn Val Val Ile Ala 35 40 45 Ser Arg Lys Leu Asp Arg Leu Thr Ala Ala Val Asp Glu Leu Arg Ala 50 55 60 Ser Leu Pro Pro Ser Ser Ser Ala Glu Val Ser Ala Ile Gln Cys Asn 65 70 75 80 Ile Arg Lys Glu Glu Glu Val Ser Asn Leu Val Lys Ser Thr Leu Ala 85 90 95 Lys Tyr Gly Lys Ile Asn Phe Leu Val Asn Asn Gly Gly Gly Gln Phe 100 105 110 Met Ala Pro Val Glu Asp Ile Thr Ala Lys Gly Trp His Ala Val Ile 115 120 125 Glu Thr Asn Leu Thr Gly Thr Phe Tyr Met Cys Lys Glu Val Tyr Asn 130 135 140 Ser Trp Met Arg Glu His Gly Gly Ser Ile Val Asn Ile Ile Val Leu 145 150 155 160 Leu Asn Asn Gly Phe Pro Thr Ala Ala His Thr Gly Ala Ala Arg Glu 165 170 175 Gly Val Tyr Asn Leu Thr Lys Ser Met Ala Leu Ala Trp Ala Ser Ser 180 185 190 Gly Val Arg Ile Asn Cys Val Ala Pro Gly Thr Ile Tyr Ser Gln Thr 195 200 205 Ala Val Asp Asn Tyr Gly Glu Met Gly Gln Thr Leu Phe Glu Met Ala 210 215 220 Phe Asp Ser Ile Pro Val Ser Ala Leu Gly Val Pro Glu Glu Ile Ser 225 230 235 240 Leu Leu Ala Arg Phe Leu Leu Ser Pro Ala Ala Ser Tyr Ile Thr Gly 245 250 255 Gln Leu Ile Asn Val Asp Gly Gly Gln Ala Leu His Thr His Ala Phe 260 265 270 Ser Ile Pro Asp His Asp Asn Trp Pro Val Gly Ala Gly Asp Leu Ser 275 280 285 Ile Val Lys Arg Ile Lys Glu Ser Phe Lys Lys Lys Ala Lys Leu 290 295 300 66373PRTRattus norvegicus 66Met Leu Val Ser Arg Arg Leu Thr Gly Ala Arg Ala Arg Ala Pro Leu 1 5 10 15 Leu Ala Ser Leu Leu Glu Ala Trp Cys Arg Gln Gly Arg Thr Thr Ser 20 25 30 Ser Tyr Ser Ala Phe Ser Glu Pro Ser His Val Arg Ala Leu Val Tyr 35 40 45 Gly Asn His Gly Asp Pro Ala Lys Val Ile Gln Leu Lys Asn Leu Glu 50 55 60 Leu Thr Ala Val Glu Gly Ser Asp Val His Val Lys Met Leu Ala Ala 65 70 75 80 Pro Ile Asn Pro Ser Asp Ile Asn Met Ile Gln Gly Asn Tyr Gly Leu 85 90 95 Leu Pro Lys Leu Pro Ala Val Gly Gly Asn Glu Gly Val Gly Gln Val 100 105 110 Ile Ala Val Gly Ser Ser Val Ser Gly Leu Lys Pro Gly Asp Trp Val 115 120 125 Ile Pro Ala Asn Ala Gly Leu Gly Thr Trp Arg Thr Glu Ala Val Phe 130 135 140 Ser Glu Glu Ala Leu Ile Gly Val Pro Lys Asp Ile Pro Leu Gln Ser 145 150 155 160 Ala Ala Thr Leu Gly Val Asn Pro Cys Thr Ala Tyr Arg Met Leu Val 165 170 175 Asp Phe Glu Gln Leu Gln Pro Gly Asp Ser Val Ile Gln Asn Ala Ser 180 185 190 Asn Ser Gly Val Gly Gln Ala Val Ile Gln Ile Ala Ser Ala Leu Gly 195 200 205 Leu Lys Thr Ile Asn Val Ile Arg Asp Arg Pro Asp Ile Lys Lys Leu 210 215 220 Thr Asp Arg Leu Lys Asp Leu Gly Ala Asp Tyr Val Leu Thr Glu Glu 225 230 235 240 Glu Leu Arg Met Pro Glu Thr Lys Asn Ile Phe Lys Asp Leu Pro Leu 245 250 255 Pro Arg Leu Ala Leu Asn Cys Val Gly Gly Lys Ser Ser Thr Glu Leu 260 265 270 Leu Arg His Leu Ala Pro Gly Gly Thr Met Val Thr Tyr Gly Gly Met 275 280 285 Ala Lys Gln Pro Val Thr Ala Ser Val Ser Met Leu Ile Phe Lys Asp 290 295 300 Leu Lys Leu Arg Gly Phe Trp Leu Ser Gln Trp Lys Lys Asn His Ser 305 310 315 320 Pro Asp Glu Phe Lys Glu Leu Ile Leu Ile Leu Cys Asn Leu Ile Arg 325 330 335 Gln Gly Gln Leu Thr Ala Pro Ala Trp Ser Gly Ile Pro Leu Gln Asp 340 345 350 Tyr Gln Gln Ala Leu Glu Ala Ser Met Lys Pro Phe Val Ser Leu Lys 355 360 365 Gln Ile Leu Thr Met 370 67380PRTSaccharomyces cerevisiae 67Met Leu Pro Thr Phe Lys Arg Tyr Met Ser Ser Ser Ala His Gln Ile 1 5 10 15 Pro Lys His Phe Lys Ser Leu Ile Tyr Ser Thr His Glu Val Glu Asp 20 25 30 Cys Thr Lys Val Leu Ser Val Lys Asn Tyr Thr Pro Lys Gln Asp Leu 35 40 45 Ser Gln Ser Ile Val Leu Lys Thr Leu Ala Phe Pro Ile Asn Pro Ser 50 55 60 Asp Ile Asn Gln Leu Gln Gly Val Tyr Pro Ser Arg Pro Glu Lys Thr 65 70 75 80 Tyr Asp Tyr Ser Thr Asp Glu Pro Ala Ala Ile Ala Gly Asn Glu Gly 85 90 95 Val Phe Glu Val Val Ser Leu Pro Ser Gly Ser Ser Lys Gly Asp Leu 100 105 110 Lys Leu Gly Asp Arg Val Ile Pro Leu Gln Ala Asn Gln Gly Thr Trp 115

120 125 Ser Asn Tyr Arg Val Phe Ser Ser Ser Ser Asp Leu Ile Lys Val Asn 130 135 140 Asp Leu Asp Leu Phe Ser Ala Ala Thr Val Ser Val Asn Gly Cys Thr 145 150 155 160 Gly Phe Gln Leu Val Ser Asp Tyr Ile Asp Trp Asn Ser Asn Gly Asn 165 170 175 Glu Trp Ile Ile Gln Asn Ala Gly Thr Ser Ser Val Ser Lys Ile Val 180 185 190 Thr Gln Val Ala Lys Ala Lys Gly Ile Lys Thr Leu Ser Val Ile Arg 195 200 205 Asp Arg Asp Asn Phe Asp Glu Val Ala Lys Val Leu Glu Asp Lys Tyr 210 215 220 Gly Ala Thr Lys Val Ile Ser Glu Ser Gln Asn Asn Asp Lys Thr Phe 225 230 235 240 Ala Lys Glu Val Leu Ser Lys Ile Leu Gly Glu Asn Ala Arg Val Arg 245 250 255 Leu Ala Leu Asn Ser Val Gly Gly Lys Ser Ser Ala Ser Ile Ala Arg 260 265 270 Lys Leu Glu Asn Asn Ala Leu Met Leu Thr Tyr Gly Gly Met Ser Lys 275 280 285 Gln Pro Val Thr Leu Pro Thr Ser Leu His Ile Phe Lys Gly Leu Thr 290 295 300 Ser Lys Gly Tyr Trp Val Thr Glu Lys Asn Lys Lys Asn Pro Gln Ser 305 310 315 320 Lys Ile Asp Thr Ile Ser Asp Phe Ile Lys Met Tyr Asn Tyr Gly His 325 330 335 Ile Ile Ser Pro Arg Asp Glu Ile Glu Thr Leu Thr Trp Asn Thr Asn 340 345 350 Thr Thr Thr Asp Glu Gln Leu Leu Glu Leu Val Lys Lys Gly Ile Thr 355 360 365 Gly Lys Gly Lys Lys Lys Met Val Val Leu Glu Trp 370 375 380 68365PRTPenicillium Chrysogenum 68Met Ser Lys Arg Val Thr Ile Phe Asp Pro Pro Glu Gln Asp His Ser 1 5 10 15 Lys Ala Leu Ile Glu Asn Val Leu Asp Leu Thr Pro Val Val Asp Leu 20 25 30 Gly Pro Asp Val Phe Thr Asn Thr Arg Pro Leu Trp His Pro Pro Gly 35 40 45 Ala Arg Gly Ile Tyr Gly Gly Ala Ala Ile Ala Gln Ser Leu Ser Ala 50 55 60 Ala Met Arg Thr Val Pro Ala Asp Tyr Ala Val His Ser Met His Cys 65 70 75 80 Tyr Phe Val Leu Ala Gly Asp Ser Glu Ile Pro Ile Leu Tyr His Val 85 90 95 Glu Arg Val Arg Asp Gly Arg Ser Phe Val Thr Arg Thr Val Gln Ala 100 105 110 Arg Gln Arg Gly Arg Pro Ile Phe Thr Thr Thr Leu Ser Phe Ser Arg 115 120 125 Val Gly Ser Gly Gly Glu Lys Thr Leu His His Ala Val Ser Lys Pro 130 135 140 Asp Val Pro Leu Pro Glu Glu Ala Glu Pro Gly Ser Leu Lys Ala Leu 145 150 155 160 Ser Asn Ala Gly Gly Gly Pro Phe Glu Ser Arg Lys Ala Gly Ile Leu 165 170 175 Asn Arg Thr Ser Pro Asn Pro Glu Asp Lys Lys Val Arg Arg Tyr Ile 180 185 190 Arg Ala Arg Gly Ala Ile Ser Glu Glu Gly Gly Tyr Gln Ala His Leu 195 200 205 Ser Ala Leu Ala Tyr Ile Thr Asp Ser Tyr Phe Ile Gly Thr Val Ser 210 215 220 Ile Val His Asp Val Pro Arg Phe Ser Ser Pro Ala Glu Leu Glu Lys 225 230 235 240 Leu Leu Asn Ala Leu Lys Asn Pro Ser Asp Leu Asp Asp Glu Asp Ile 245 250 255 Thr Arg Ala Leu Arg Glu Leu Lys Glu Glu Glu Ala Ala Glu Leu Arg 260 265 270 Arg Arg Leu Glu Gly Ala Leu Asn Arg Ala Thr Gly Pro Lys Glu Val 275 280 285 Asp His Lys Glu Val Gly Met Met Val Ser Leu Asp His Ser Ile Tyr 290 295 300 Phe His Asn Pro Arg Ala Phe Arg Ala Asp Glu Trp Met Leu Ser Glu 305 310 315 320 Ile Glu Ser Pro Trp Ala Gly Glu Gly Arg Gly Leu Ala Ile Gln Lys 325 330 335 Leu Trp Ser Lys Asp Gly Val Leu Ile Ala Thr Cys Thr Gln Glu Val 340 345 350 Cys Ile Cys Phe Tyr Ser Leu Tyr Ser Gly Gly Gln Cys 355 360 365 69525PRTPenicillium Chrysogenum 69Met Ser Ala Ser Ala Leu Leu Lys Ser Arg Val Arg Arg Pro Ser Tyr 1 5 10 15 Leu Lys Lys Leu Ala Lys Pro Glu Asp Leu Leu His His Phe Pro Asn 20 25 30 Gly Thr Tyr Ile Gly Trp Ser Gly Phe Thr Gly Val Gly Tyr Pro Lys 35 40 45 Met Thr Pro Ile Ala Leu Ala Asp His Val Glu Lys Asn Asn Leu Gln 50 55 60 Gly Gln Leu Lys Tyr Asn Leu Phe Val Gly Ala Ser Ser Gly Ala Glu 65 70 75 80 Thr Glu Asn Arg Trp Ala Arg Leu Asn Met Ile Glu Arg Arg Ser Pro 85 90 95 His Gln Val Gly Lys Glu Ile Ala Lys Gly Ile Asn Asn Gly Gln Ile 100 105 110 Lys Phe Phe Asp Lys His Leu Ser Met Phe Pro Ser Asp Leu Val Tyr 115 120 125 Gly Tyr Tyr Thr Leu Asn Lys Ser Lys Pro Thr Ile Asp Val Ala Val 130 135 140 Ile Glu Ala Ser Ala Ile Thr Glu Asn Gly Gly Ile Ile Pro Gly Ala 145 150 155 160 Ser Val Gly Ala Ser Pro Glu Leu Ile Gln Met Ala Asp Lys Val Ile 165 170 175 Ile Glu Val Asn Thr Ser Met Pro Ser Phe Glu Gly Leu His Asp Ile 180 185 190 Thr Cys Ser Asp Leu Pro Pro Gly Arg Lys Pro Tyr Leu Ile Met Ala 195 200 205 Pro Glu Asp Arg Ile Gly Thr Ser Tyr Ile Pro Ile Asp Pro Glu Lys 210 215 220 Val Val Ala Ile Val Glu Ser Asn Tyr Pro Asp Gln Thr Leu Pro Asn 225 230 235 240 Ala Pro Glu Asp Glu Gly Ser Gln Ala Ile Ala Ser Asn Leu Ile Glu 245 250 255 Phe Leu Lys His Glu Val Asn His Gly Arg Leu Pro Pro Asn Leu Leu 260 265 270 Pro Ile Gln Ser Gly Ile Gly Asn Ile Ala Asn Ala Val Val Gly Gly 275 280 285 Leu Ser Lys Gly Gly Ala Asp Phe Lys Asn Leu Lys Val Trp Thr Glu 290 295 300 Val Leu Gln Asp Ser Phe Leu Asp Leu Phe Asp Ser Gly Asn Leu Asp 305 310 315 320 Phe Ala Thr Ala Thr Ser Ile Arg Phe Ser Pro Asp Gly Phe Lys Arg 325 330 335 Phe Tyr Asp Asn Trp Glu Gln Tyr Ala Gly Lys Leu Leu Leu Arg Ser 340 345 350 Gln Gln Val Ser Asn Ser Pro Glu Ile Ile Arg Arg Leu Gly Cys Ile 355 360 365 Gly Met Asn Thr Pro Val Glu Val Asp Ile Tyr Ala His Ala Asn Ser 370 375 380 Thr Cys Val Met Gly Ser Arg Met Leu Asn Gly Leu Gly Gly Ser Ala 385 390 395 400 Asp Phe Leu Arg Asn Ser Lys Tyr Ser Ile Met His Thr Pro Ser Ala 405 410 415 Arg Pro Thr Lys Thr Asp Pro Thr Gly Val Ser Cys Ile Val Pro Phe 420 425 430 Ala Thr His Ile Asp Gln Thr Glu His Asp Leu Asp Val Val Val Thr 435 440 445 Glu Gln Gly Leu Ala Asp Val Arg Gly Leu Ser Pro Arg Glu Arg Ala 450 455 460 Arg Val Ile Ile Lys Asn Cys Ser His Pro Asp Tyr Thr Pro Ile Leu 465 470 475 480 Thr Asp Tyr Leu Asp Arg Ala Glu Phe Glu Cys Leu Arg Lys Gly Met 485 490 495 Gly His Glu Pro His Met Leu Phe Gln Ala Phe Asn Met His Lys Asn 500 505 510 Leu Gln Glu Lys Gly Thr Met Lys Ile Asp Ser Trp Glu 515 520 525 70253PRTPenicillium Chrysogenum 70Met Asp Lys Tyr Thr Ile Pro Leu Glu Lys Ala Val Glu Leu Thr Pro 1 5 10 15 Ile Pro Ser Glu Pro Asp Thr Phe Thr Asn Ala Gln Pro Leu Trp Ser 20 25 30 Phe Ala Gly Gly Tyr Gly Val Tyr Gly Gly Ser Thr Val Ala His Cys 35 40 45 Leu Val Ala Ala Gln Lys Thr Val Pro Cys Asp Tyr Val Ala His Ser 50 55 60 Leu His Cys Gly Phe Val Ser Pro Gly Asn Pro Lys Arg Pro Ile Glu 65 70 75 80 Tyr Arg Val Glu Arg Thr Arg Asp Gly Lys Ser Phe Ile Thr Arg Thr 85 90 95 Val His Ala Thr Gln Lys Ala Gly Val Ile Ser Glu Ala Ile Val Asn 100 105 110 Phe Val Arg Val Gly Thr Tyr Ser Asn Asn Ala Ser His Asp Leu Val 115 120 125 Asn Thr Gln Ile Arg Tyr Trp Val Arg Ala Lys Asp Pro Ile Gln Gln 130 135 140 Arg Ser Pro Gln Ala Gln Leu Ala Ala Leu Ala Tyr Met Ser Asp Ala 145 150 155 160 Tyr Leu Ile Gly Ala Ala Val Gln Val His Asp Val Ala Gly Gln Ala 165 170 175 Phe Gly Thr Lys Met Ala Met Ala Ala Ser Leu Asn His Thr Ile Tyr 180 185 190 Phe His Asn Pro Glu Ala Val Arg Ala Asp Glu Trp Met Cys Ser Glu 195 200 205 Arg Glu Ser Pro Trp Ala Gly Asn Asp Arg Ala Leu Val Val Gln Arg 210 215 220 Val Trp Ser Pro Glu Gly Ile Leu Val Ala Thr Cys Val Gln Glu Gly 225 230 235 240 Val Leu Arg Val Gln Val Pro Ser Glu Lys Val Lys Leu 245 250 71462PRTPenicillium Chrysogenum 71Met Phe Gly Leu Ser Arg Arg Ser Ala Leu Ala Arg Ser Lys Ser Leu 1 5 10 15 Ala Ala Leu Pro Ala Arg Ala Ala Val Ala Ala Gln Pro Ser Cys Ile 20 25 30 Asn Thr Gln Gly Phe His Ser Thr Pro Ser Gln Ala Ala Ser Arg Pro 35 40 45 Thr Trp Met Pro Met Arg Val Lys Thr Pro Trp Ile Glu Ala Leu Thr 50 55 60 Gln Ile Arg Glu Ala Gln Lys Ala Gly Pro Gln Glu Asn Ala Gly Gln 65 70 75 80 Ser Val Lys Arg Asp Leu Ser Pro Lys Lys Met Ser Asp Ser Tyr Tyr 85 90 95 Ser Ala Ile Leu Pro Leu Ala Gln Asp Lys Trp Leu Leu Asp Ser Tyr 100 105 110 Leu Asn Ala Ser Gly His Ile Arg Leu Gly Ser Leu Leu Met Asp Leu 115 120 125 Asp Ala Leu Ala Gly Ile Val Ala Tyr Arg His Thr Gly Asp Gly Val 130 135 140 Ser Thr Val Thr Ala Ala Cys Asp Arg Ile Thr Ile Glu Asn Pro Leu 145 150 155 160 Met Glu Ile Cys Asp Leu Glu Leu Ser Gly Gln Cys Thr Tyr Ala Thr 165 170 175 Gly Arg Ser Ser Met Glu Ile Ser Leu Gln Val Thr Lys Ala Arg Pro 180 185 190 Glu Gly Gln Glu Ala Lys Pro Glu Asp Ile Leu Ile Thr Cys Ala Phe 195 200 205 Thr Met Val Ser Leu Asp Pro Ala Thr Lys Ala Pro Val Pro Val Ala 210 215 220 Pro Leu Ile Val Glu Thr Glu Glu Glu Lys Arg Leu Phe Gln Lys Gly 225 230 235 240 Glu Ala Asn Tyr Gln Ala Lys Lys Ala Leu Arg Thr Arg Ser Leu Leu 245 250 255 Gln Lys Ser Pro Asp Asp Glu Glu Ser Asn Leu Ile His Ser Met Trp 260 265 270 Thr Lys Glu Met Ser Tyr Leu Asn Pro Gln Asn Pro Ala Thr Arg Pro 275 280 285 Ala Asn Gln Val Phe Met Ser Asp Thr Val Leu Lys Ser Ala Met Ile 290 295 300 Met Gln Pro Gln Asp Arg Asn Arg His Asn Phe Met Ile Phe Gly Gly 305 310 315 320 Phe Leu Leu Lys Gln Thr Phe Glu Leu Ala Phe Cys Cys Ala Ala Ser 325 330 335 Phe Ala His Ala Arg Pro Asn Phe Val Ala Leu Asp Pro Ser Thr Phe 340 345 350 Glu Asn Pro Val Pro Val Gly Ser Val Leu Tyr Leu Arg Ala Thr Val 355 360 365 Ser Tyr Thr Glu Pro Glu Glu Arg Glu Gly Asp Ser Thr Lys Tyr Thr 370 375 380 Lys Val Gln Val Arg Val Asp Ser Lys Val Arg Asp Val Glu His Gly 385 390 395 400 Thr Lys Lys Ser Thr Gly Met Phe Asn Tyr Thr Phe Leu Val Glu Lys 405 410 415 Asp Val Gln Val Met Pro Lys Gly Tyr Gly Glu Phe Met Leu Trp Ala 420 425 430 Asp Ala Arg Arg Arg Ala Gln Asn Ala Ala Ala Ile Asp Pro Ala His 435 440 445 Lys Met Ser Ala Leu Arg Ser Ile Lys Asp Ser Val Thr Glu 450 455 460 72357PRTPenicillium Chrysogenum 72Met Ser Pro Gln Arg Gly Ala Pro Asp Asn Asp Asp Leu Thr Ser Pro 1 5 10 15 His Ser Phe Val Glu Leu Met Ser Leu Gln Arg Leu Glu Asp Ala Leu 20 25 30 Ile Thr Tyr Pro Asp Ser Ala Lys Pro Glu Lys Ile Glu Arg Phe Arg 35 40 45 Ser Leu Ala Thr Pro Tyr Asn Pro Gly Gln Gly Thr Arg Ser Phe Gly 50 55 60 Gly His Val Tyr Ala Gln Ser Ala Tyr Ala Ala Ser Lys Thr Val Gly 65 70 75 80 Pro Gly Leu Val Ile His Asp Met Thr Gly Thr Phe Ile Leu Gly Gly 85 90 95 Leu Leu Asp Thr Pro Tyr Val Tyr Thr Val Arg His Ile Arg Asp Gly 100 105 110 Tyr Met Tyr Ser Thr Arg Ala Val Asp Ala Arg Gln Ala Gly Arg Ile 115 120 125 Cys Phe Ser Cys Ile Cys Ser Phe Lys Arg Asp Glu Lys Gln Arg Leu 130 135 140 Phe Gln His Gln Pro Ala Ser Ala Gln Ala Arg Phe Asp Ser Ile Leu 145 150 155 160 Ser Ala Lys Arg Pro Glu Asp Gln Glu Pro Ser Pro Ser Val Asp Ala 165 170 175 Glu Trp Trp Ile Glu Ala Val Arg Gln Gly Asn Ile Ser Glu Ser Glu 180 185 190 Phe Pro Gly Leu Asp Val Arg Lys Thr Asp Met Lys Asp Tyr Asn Cys 195 200 205 Ala Glu Asp Val Lys Gln His Pro Glu Arg Tyr Arg Gln Leu Thr Gln 210 215 220 Tyr Arg Leu Lys Gly Ser Pro Glu Glu Asp Pro Ala Ala Ser Leu Ala 225 230 235 240 Gln Ile Arg Glu Arg Glu Glu Asn Gly Glu Tyr Asp Asn Leu Tyr Ala 245 250 255 Cys Ala His Met Tyr Ser Ser Asp Lys Asn Ser Leu Leu Leu Ile Pro 260 265 270 Arg Ala Leu Gly Ile Lys Asn Trp Thr Glu Met Ala Ser Leu Thr Leu 275 280 285 Thr Val Ile Val His Gln His Gly Glu Ala Leu Arg Met Val Asn Trp 290 295 300 Asp Ser Ile Gly Asp Ser Asp Val Gly Val Asp Lys Leu Pro Met Lys 305 310 315 320 Trp Phe Val Gln Glu Gly Trp Thr Pro Arg Ala Thr Glu Asn Arg Gly 325 330 335 Thr His Glu Ser His Leu Trp Ser Pro Asp Gly Thr Leu Leu Ala Thr 340 345 350 Ser Leu Gln Asp Asn 355 73320PRTMus musculus 73Met Ser Ala Pro Glu Gly Leu Gly Asp Ala His Gly Asp Ala Asp Arg 1 5 10 15 Gly Asp Leu Ser Gly Asp Leu Arg Ser Val Leu Val Thr Ser Val Leu 20 25 30 Asn Leu Glu Pro Leu Asp Glu Asp Leu Tyr Arg Gly Arg His Tyr Trp 35 40 45 Val Pro Thr Ser Gln Arg Leu Phe Gly Gly Gln Ile Met Gly Gln Ala 50

55 60 Leu Val Ala Ala Ala Lys Ser Val Ser Glu Asp Val His Val His Ser 65 70 75 80 Leu His Cys Tyr Phe Val Arg Ala Gly Asp Pro Lys Val Pro Val Leu 85 90 95 Tyr His Val Glu Arg Ile Arg Thr Gly Ala Ser Phe Ser Val Arg Ala 100 105 110 Val Lys Ala Val Gln His Gly Lys Ala Ile Phe Ile Cys Gln Ala Ser 115 120 125 Phe Gln Gln Met Gln Pro Ser Pro Leu Gln His Gln Phe Ser Met Pro 130 135 140 Ser Val Pro Pro Pro Glu Asp Leu Leu Asp His Glu Ala Leu Ile Asp 145 150 155 160 Gln Tyr Leu Arg Asp Pro Asn Leu His Lys Lys Tyr Arg Val Gly Leu 165 170 175 Asn Arg Val Ala Ala Gln Glu Val Pro Ile Glu Ile Lys Val Val Asn 180 185 190 Pro Pro Thr Leu Thr Gln Leu Gln Ala Leu Glu Pro Lys Gln Met Phe 195 200 205 Trp Val Arg Ala Arg Gly Tyr Ile Gly Glu Gly Asp Ile Lys Met His 210 215 220 Cys Cys Val Ala Ala Tyr Ile Ser Asp Tyr Ala Phe Leu Gly Thr Ala 225 230 235 240 Leu Leu Pro His Gln Ser Lys Tyr Lys Val Asn Phe Met Ala Ser Leu 245 250 255 Asp His Ser Met Trp Phe His Ala Pro Phe Arg Ala Asp His Trp Met 260 265 270 Leu Tyr Glu Cys Glu Ser Pro Trp Ala Gly Gly Phe Arg Gly Leu Val 275 280 285 His Gly Arg Leu Trp Arg Arg Asp Gly Val Leu Ala Val Thr Cys Ala 290 295 300 Gln Glu Gly Val Ile Arg Leu Lys Pro Gln Val Ser Glu Ser Lys Leu 305 310 315 320 74472PRTClostridium kluyveri 74Met Ser Asn Glu Val Ser Ile Lys Glu Leu Ile Glu Lys Ala Lys Ala 1 5 10 15 Ala Gln Lys Lys Leu Glu Ala Tyr Ser Gln Glu Gln Val Asp Val Leu 20 25 30 Val Lys Ala Leu Gly Lys Val Val Tyr Asp Asn Ala Glu Met Phe Ala 35 40 45 Lys Glu Ala Val Glu Glu Thr Glu Met Gly Val Tyr Glu Asp Lys Val 50 55 60 Ala Lys Cys His Leu Lys Ser Gly Ala Ile Trp Asn His Ile Lys Asp 65 70 75 80 Lys Lys Thr Val Gly Ile Ile Lys Glu Glu Pro Glu Arg Ala Leu Val 85 90 95 Tyr Val Ala Lys Pro Lys Gly Val Val Ala Ala Thr Thr Pro Ile Thr 100 105 110 Asn Pro Val Val Thr Pro Met Cys Asn Ala Met Ala Ala Ile Lys Gly 115 120 125 Arg Asn Thr Ile Ile Val Ala Pro His Pro Lys Ala Lys Lys Val Ser 130 135 140 Ala His Thr Val Glu Leu Met Asn Ala Glu Leu Lys Lys Leu Gly Ala 145 150 155 160 Pro Glu Asn Ile Ile Gln Ile Val Glu Ala Pro Ser Arg Glu Ala Ala 165 170 175 Lys Glu Leu Met Glu Ser Ala Asp Val Val Ile Ala Thr Gly Gly Ala 180 185 190 Gly Arg Val Lys Ala Ala Tyr Ser Ser Gly Arg Pro Ala Tyr Gly Val 195 200 205 Gly Pro Gly Asn Ser Gln Val Ile Val Asp Lys Gly Tyr Asp Tyr Asn 210 215 220 Lys Ala Ala Gln Asp Ile Ile Thr Gly Arg Lys Tyr Asp Asn Gly Ile 225 230 235 240 Ile Cys Ser Ser Glu Gln Ser Val Ile Ala Pro Ala Glu Asp Tyr Asp 245 250 255 Lys Val Ile Ala Ala Phe Val Glu Asn Gly Ala Phe Tyr Val Glu Asp 260 265 270 Glu Glu Thr Val Glu Lys Phe Arg Ser Thr Leu Phe Lys Asp Gly Lys 275 280 285 Ile Asn Ser Lys Ile Ile Gly Lys Ser Val Gln Ile Ile Ala Asp Leu 290 295 300 Ala Gly Val Lys Val Pro Glu Gly Thr Lys Val Ile Val Leu Lys Gly 305 310 315 320 Lys Gly Ala Gly Glu Lys Asp Val Leu Cys Lys Glu Lys Met Cys Pro 325 330 335 Val Leu Val Ala Leu Lys Tyr Asp Thr Phe Glu Glu Ala Val Glu Ile 340 345 350 Ala Met Ala Asn Tyr Met Tyr Glu Gly Ala Gly His Thr Ala Gly Ile 355 360 365 His Ser Asp Asn Asp Glu Asn Ile Arg Tyr Ala Arg Thr Val Leu Pro 370 375 380 Ile Ser Arg Leu Val Val Asn Gln Pro Ala Thr Thr Ala Gly Gly Thr 385 390 395 400 Val Leu Pro Ile Ser Arg Leu Val Val Asn Gln Pro Ala Thr Thr Ala 405 410 415 Gly Gly Ser Phe Asn Asn Gly Phe Asn Pro Thr Thr Thr Leu Gly Cys 420 425 430 Gly Ser Trp Gly Arg Asn Ser Ile Ser Glu Asn Leu Thr Tyr Glu His 435 440 445 Leu Ile Asn Val Ser Arg Ile Gly Tyr Phe Asn Lys Glu Ala Lys Val 450 455 460 Pro Ser Tyr Glu Glu Ile Trp Gly 465 470 75451PRTPorphyromonas gingivalis 75Met Glu Ile Lys Glu Met Val Ser Leu Ala Arg Lys Ala Gln Lys Glu 1 5 10 15 Tyr Gln Ala Thr His Asn Gln Glu Ala Val Asp Asn Ile Cys Arg Ala 20 25 30 Ala Ala Lys Val Ile Tyr Glu Asn Ala Ala Ile Leu Ala Arg Glu Ala 35 40 45 Val Asp Glu Thr Gly Met Gly Val Tyr Glu His Lys Val Ala Lys Asn 50 55 60 Gln Gly Lys Ser Lys Gly Val Trp Tyr Asn Leu His Asn Lys Lys Ser 65 70 75 80 Ile Gly Ile Leu Asn Ile Asp Glu Arg Thr Gly Met Ile Glu Ile Ala 85 90 95 Lys Pro Ile Gly Val Val Gly Ala Val Thr Pro Thr Thr Asn Pro Ile 100 105 110 Val Thr Pro Met Ser Asn Ile Ile Phe Ala Leu Lys Thr Cys Asn Ala 115 120 125 Ile Ile Ile Ala Pro His Pro Arg Ser Lys Lys Cys Ser Ala His Ala 130 135 140 Val Arg Leu Ile Lys Glu Ala Ile Ala Pro Phe Asn Val Pro Glu Gly 145 150 155 160 Met Val Gln Ile Ile Glu Glu Pro Ser Ile Glu Lys Thr Gln Glu Leu 165 170 175 Met Gly Ala Val Asp Val Val Val Ala Thr Gly Gly Met Gly Met Val 180 185 190 Lys Ser Ala Tyr Ser Ser Gly Lys Pro Ser Phe Gly Val Gly Ala Gly 195 200 205 Asn Val Gln Val Ile Val Asp Ser Asn Ile Asp Phe Glu Ala Ala Ala 210 215 220 Glu Lys Ile Ile Thr Gly Arg Ala Phe Asp Asn Gly Ile Ile Cys Ser 225 230 235 240 Gly Glu Gln Ser Ile Ile Tyr Asn Glu Ala Asp Lys Glu Ala Val Phe 245 250 255 Thr Ala Phe Arg Asn His Gly Ala Tyr Phe Cys Asp Glu Ala Glu Gly 260 265 270 Asp Arg Ala Arg Ala Ala Ile Phe Glu Asn Gly Ala Ile Ala Lys Asp 275 280 285 Val Val Gly Gln Ser Val Ala Phe Ile Ala Lys Lys Ala Asn Ile Asn 290 295 300 Ile Pro Glu Gly Thr Arg Ile Leu Val Val Glu Ala Arg Gly Val Gly 305 310 315 320 Ala Glu Asp Val Ile Cys Lys Glu Lys Met Cys Pro Val Met Cys Ala 325 330 335 Leu Ser Tyr Lys His Phe Glu Glu Gly Val Glu Ile Ala Arg Thr Asn 340 345 350 Leu Ala Asn Glu Gly Asn Gly His Thr Cys Ala Ile His Ser Asn Asn 355 360 365 Gln Ala His Ile Ile Leu Ala Gly Ser Glu Leu Thr Val Ser Arg Ile 370 375 380 Val Val Asn Ala Pro Ser Ala Thr Thr Ala Gly Gly His Ile Gln Asn 385 390 395 400 Gly Leu Ala Val Thr Asn Thr Leu Gly Cys Gly Ser Trp Gly Asn Asn 405 410 415 Ser Ile Ser Glu Asn Phe Thr Tyr Lys His Leu Leu Asn Ile Ser Arg 420 425 430 Ile Ala Pro Leu Asn Ser Ser Ile His Ile Pro Asp Asp Lys Glu Ile 435 440 445 Trp Glu Leu 450 76876PRTClostridium kluyveri 76Met Lys Val Thr Asn Val Glu Glu Leu Met Lys Lys Leu Gln Lys Val 1 5 10 15 Arg Gln Ala Gln Glu Lys Phe Ser Thr Tyr Thr Gln Glu Gln Val Asp 20 25 30 Glu Ile Phe Lys Gln Ala Ala Met Ala Ala Asn Ser Ala Arg Ile Lys 35 40 45 Leu Ala Lys Met Ala Val Glu Glu Thr Gly Met Gly Ile Val Glu Asp 50 55 60 Lys Val Ile Lys Asn His Phe Val Ser Glu Tyr Val Tyr Asn Lys Tyr 65 70 75 80 Lys Asp Glu Gln Thr Cys Gly Val Leu Glu Arg Asp Glu Gly Phe Gly 85 90 95 Met Val Arg Ile Ala Glu Pro Val Gly Val Ile Ala Ala Val Val Pro 100 105 110 Thr Thr Asn Pro Thr Ser Thr Ala Ile Phe Lys Ala Leu Ile Ala Leu 115 120 125 Lys Thr Arg Asn Gly Ile Val Phe Ser Pro His Pro Arg Ala Lys Arg 130 135 140 Ser Thr Val Ala Ala Ala Lys Ile Val Leu Asp Ala Ala Val Glu Ala 145 150 155 160 Gly Ala Pro Val Glu Ile Ile Gly Trp Ile Asp Glu Pro Ser Ile Glu 165 170 175 Leu Ser Gln Leu Val Met Lys Glu Ala Asp Leu Ile Leu Ala Thr Gly 180 185 190 Gly Pro Gly Met Val Arg Ala Ala Tyr Ser Ser Gly Lys Pro Ala Ile 195 200 205 Gly Val Gly Pro Gly Asn Thr Pro Val Ile Ile Asp Asp Ser Ala Asn 210 215 220 Ile Lys Met Ala Val Asn Ser Ile Leu Leu Ser Lys Ser Phe Asp His 225 230 235 240 Gly Val Ile Cys Ala Ser Glu Gln Ser Val Met Val Leu Asp Arg Ile 245 250 255 Tyr Glu Glu Val Lys Thr Glu Phe Ser Glu Arg Gly Gly Tyr Ile Leu 260 265 270 Lys Asn Asp Glu Ile Asp Lys Val Arg Glu Thr Ile Leu Val Asn Gly 275 280 285 Ser Ile Ser Pro Asp Ile Val Gly Gln Ser Ala Arg Lys Ile Ala Glu 290 295 300 Met Ala Gly Val Lys Val Pro Glu Arg Thr Lys Ile Leu Ile Gly Glu 305 310 315 320 Val Glu Ser Val Glu Leu Glu Glu Pro Phe Ser Arg Glu Lys Leu Ser 325 330 335 Pro Val Leu Ala Met Tyr Arg Val Lys Asn Phe Asn Asp Gly Leu Lys 340 345 350 Lys Ala Ala Arg Leu Val Glu Leu Gly Gly Ile Gly His Thr Ser Val 355 360 365 Leu Tyr Val Asn Thr Met Thr Gln Lys Glu Lys Val Glu Lys Phe Ser 370 375 380 Glu Ala Met Lys Thr Gly Arg Thr Leu Ile Asn Met Pro Ser Ala Gln 385 390 395 400 Gly Ala Ile Gly Asp Leu Tyr Asn Phe Lys Leu Ala Pro Ser Leu Thr 405 410 415 Leu Gly Cys Gly Ser Trp Gly Gly Asn Ser Ile Ser Glu Asn Val Gly 420 425 430 Pro Lys His Leu Leu Asn Ile Lys Ser Ile Ala Glu Arg Arg Glu Asn 435 440 445 Met Leu Trp Phe Arg Val Pro Glu Lys Ile Tyr Phe Lys Tyr Gly Ala 450 455 460 Leu Gly Thr Ala Leu Lys Glu Leu Lys Thr Met His Lys Lys Lys Val 465 470 475 480 Phe Ile Val Thr Asp Lys Val Leu Tyr Gln Leu Gly Tyr Thr Asp Ser 485 490 495 Ile Thr Lys Ile Leu Gly Glu Met Gly Val Gly Tyr Lys Ile Phe Thr 500 505 510 Asp Val Glu Pro Asp Pro Thr Leu Ala Thr Ala Lys Lys Gly Ser Ala 515 520 525 Glu Met Leu Gln Tyr Asn Pro Asp Thr Ile Ile Ser Val Gly Gly Gly 530 535 540 Ser Ala Met Asp Ala Ala Lys Ile Met Trp Val Met Tyr Glu His Pro 545 550 555 560 Glu Ile Lys Phe Glu Asp Leu Ala Met Arg Phe Met Asp Ile Arg Lys 565 570 575 Arg Val Tyr Thr Phe Pro Lys Met Gly Glu Lys Ser Met Met Ile Ser 580 585 590 Val Ala Thr Ser Ala Gly Thr Gly Ser Glu Val Thr Pro Phe Thr Val 595 600 605 Ile Thr Asp Glu Lys Thr Gly Ala Lys Tyr Pro Leu Ala Asp Tyr Glu 610 615 620 Leu Thr Pro Asp Ile Ala Ile Ile Asp Ala Glu Leu Met Met Asn Met 625 630 635 640 Pro Lys Gly Leu Thr Ala Ala Ser Gly Ile Asp Ala Met Thr His Ala 645 650 655 Leu Glu Ser Tyr Val Ser Val Met Ala Ser Glu Tyr Thr Asn Gly Leu 660 665 670 Ala Leu Glu Ala Ile Arg Leu Ile Phe Lys Tyr Leu Pro Leu Ala Tyr 675 680 685 Ala Glu Gly Thr Thr Asn Val Lys Ala Arg Glu Lys Met Ala His Ala 690 695 700 Ser Thr Met Ala Gly Met Ala Phe Ala Asn Ala Phe Leu Gly Val Cys 705 710 715 720 His Ser Met Ala His Lys Leu Gly Ala Ala His His Ile Pro His Gly 725 730 735 Ile Ala Asn Ala Leu Met Ile Asp Glu Val Ile Lys Phe Asn Ala Val 740 745 750 Asn Asp Pro Arg Lys Gln Ala Ile Phe Pro Gln Tyr Lys Tyr Pro Asn 755 760 765 Ala Lys Trp Arg Tyr Ala Arg Ile Ala Asp Tyr Leu Glu Leu Gly Gly 770 775 780 Asn Ser Glu Asp Glu Lys Val Gly Leu Leu Ile Lys Ala Ile Asp Glu 785 790 795 800 Leu Lys Glu Lys Ile Asn Ile Pro Lys Thr Ile Arg Glu Ala Gly Val 805 810 815 Ala Glu Lys Lys Phe Tyr Ala Thr Leu Asp Asp Met Ser Glu Gln Ala 820 825 830 Phe Asp Asp Gln Cys Thr Gly Ala Asn Pro Arg Tyr Pro Leu Ile Ser 835 840 845 Glu Ile Lys Gln Met Tyr Ile Asn Ala Phe Asp Lys Val Ser Pro Val 850 855 860 Val Asp Glu Glu Glu Lys Leu Lys Val Ser Leu Leu 865 870 875 77491PRTClostridium kluyveri 77Met Glu Ile Met Asp Lys Asp Leu Gln Ser Ile Gln Glu Val Arg Thr 1 5 10 15 Leu Ile Ala Lys Ala Lys Lys Ala Gln Ala Glu Phe Lys Asn Phe Ser 20 25 30 Gln Glu Ala Val Asn Lys Val Ile Glu Lys Ile Ala Lys Ala Thr Glu 35 40 45 Val Glu Ala Val Lys Leu Ala Lys Leu Ala Tyr Glu Asp Thr Gly Tyr 50 55 60 Gly Lys Trp Glu Asp Lys Val Ile Lys Asn Lys Phe Ser Ser Ile Val 65 70 75 80 Val Tyr Asn Tyr Ile Lys Asp Leu Lys Thr Val Gly Ile Leu Lys Glu 85 90 95 Asp Lys Glu Lys Lys Leu Ile Asp Ile Ala Val Pro Leu Gly Val Ile 100 105 110 Ala Gly Leu Ile Pro Ser Thr Asn Pro Thr Ser Thr Ala Ile Phe Lys 115 120 125 Val Leu Ile Ala Leu Lys Ala Gly Asn Ala Ile Val Phe Ser Pro His 130 135 140 Pro Thr Ala Val Arg Ser Ile Thr Glu Thr Val Lys Ile Met Gln Lys 145 150 155 160 Ala Ala Val Glu Ala Gly Ala Pro Asp Gly Leu Ile Gln Cys Met Ser 165 170 175 Ile Leu Thr Val Glu Gly Thr Ala Glu Leu Met Lys Asn Lys Asp Thr 180 185 190 Ala Leu Ile Leu Ala Thr Gly Gly Glu Gly Met Val Arg Ala Ala Tyr 195 200 205 Ser Ser Gly Thr Pro Ala Ile Gly Val Gly Pro Gly Asn Gly Pro Cys 210 215 220 Phe Ile Glu Arg Thr Ala

Asp Ile Pro Thr Ala Val Arg Lys Val Ile 225 230 235 240 Gly Ser Asp Thr Phe Asp Asn Gly Val Ile Cys Ala Ser Glu Gln Ser 245 250 255 Ile Ile Ala Glu Thr Val Lys Lys Ala Glu Ile Ile Glu Glu Phe Lys 260 265 270 Arg Gln Lys Gly Tyr Phe Leu Asn Ala Glu Glu Ser Glu Lys Val Gly 275 280 285 Lys Ile Leu Leu Arg Ala Asn Gly Thr Pro Asn Pro Ala Ile Val Gly 290 295 300 Lys Asp Val Gln Ala Leu Ala Lys Leu Ala Gly Ile Ser Ile Pro Ser 305 310 315 320 Asp Ala Val Ile Leu Leu Ser Glu Gln Thr Asp Val Ser Pro Lys Asn 325 330 335 Pro Tyr Ala Lys Glu Lys Leu Ala Pro Val Leu Ala Phe Tyr Thr Val 340 345 350 Glu Asp Trp His Glu Ala Cys Glu Lys Ser Leu Ala Leu Leu His Asn 355 360 365 Gln Gly Ser Gly His Thr Leu Ile Ile His Ser Gln Asn Glu Glu Ile 370 375 380 Ile Arg Glu Phe Ala Leu Lys Lys Pro Val Ser Arg Ile Leu Val Asn 385 390 395 400 Ser Pro Gly Ser Leu Gly Gly Ile Gly Gly Ala Thr Asn Leu Val Pro 405 410 415 Ser Leu Thr Leu Gly Cys Gly Ala Val Gly Gly Ser Ala Thr Ser Asp 420 425 430 Asn Val Gly Pro Glu Asn Leu Phe Asn Ile Arg Lys Val Ala Tyr Gly 435 440 445 Thr Thr Thr Val Glu Glu Ile Arg Glu Ala Phe Gly Val Gly Ala Ala 450 455 460 Ser Ser Ser Ala Pro Ala Glu Pro Glu Asp Asn Glu Asp Val Gln Ala 465 470 475 480 Ile Val Lys Ala Ile Met Ala Lys Leu Asn Leu 485 490 78491PRTClostridium kluyveri 78Met Glu Ile Met Asp Lys Asp Leu Gln Ser Ile Gln Glu Val Arg Thr 1 5 10 15 Leu Ile Ala Lys Ala Lys Lys Ala Gln Ala Glu Phe Lys Asn Phe Ser 20 25 30 Gln Glu Ala Val Asn Lys Val Ile Glu Lys Ile Ala Lys Ala Thr Glu 35 40 45 Val Glu Ala Val Lys Leu Ala Lys Leu Ala Tyr Glu Asp Thr Gly Tyr 50 55 60 Gly Lys Trp Glu Asp Lys Val Ile Lys Asn Lys Phe Ser Ser Ile Val 65 70 75 80 Val Tyr Asn Tyr Ile Lys Asp Leu Lys Thr Val Gly Ile Leu Lys Glu 85 90 95 Asp Lys Glu Lys Lys Leu Ile Asp Ile Ala Val Pro Leu Gly Val Ile 100 105 110 Ala Gly Leu Ile Pro Ser Thr Asn Pro Thr Ser Thr Ala Ile Phe Lys 115 120 125 Val Leu Ile Ala Leu Lys Ala Gly Asn Ala Ile Val Phe Ser Pro His 130 135 140 Pro Thr Ala Val Arg Ser Ile Thr Glu Thr Val Lys Ile Met Gln Lys 145 150 155 160 Ala Ala Val Glu Ala Gly Ala Pro Asp Gly Leu Ile Gln Cys Met Ser 165 170 175 Ile Leu Thr Val Glu Gly Thr Ala Glu Leu Met Lys Asn Lys Asp Thr 180 185 190 Ala Leu Ile Leu Ala Thr Gly Gly Glu Gly Met Val Arg Ala Ala Tyr 195 200 205 Ser Ser Gly Thr Pro Ala Ile Gly Val Gly Pro Gly Asn Gly Pro Cys 210 215 220 Phe Ile Glu Arg Thr Ala Asp Ile Pro Thr Ala Val Arg Lys Val Ile 225 230 235 240 Gly Ser Asp Thr Phe Asp Asn Gly Val Ile Cys Ala Ser Glu Gln Ser 245 250 255 Ile Ile Ala Glu Thr Val Lys Lys Ala Glu Ile Ile Glu Glu Phe Lys 260 265 270 Arg Gln Lys Gly Tyr Phe Leu Asn Ala Glu Glu Ser Glu Lys Val Gly 275 280 285 Lys Ile Leu Leu Arg Ala Asn Gly Thr Pro Asn Pro Ala Ile Val Gly 290 295 300 Lys Asp Val Gln Ala Leu Ala Lys Leu Ala Gly Ile Ser Ile Pro Ser 305 310 315 320 Asp Ala Val Ile Leu Leu Ser Glu Gln Thr Asp Val Ser Pro Lys Asn 325 330 335 Pro Tyr Ala Lys Glu Lys Leu Ala Pro Val Leu Ala Phe Tyr Thr Val 340 345 350 Glu Asp Trp His Glu Ala Cys Glu Lys Ser Leu Ala Leu Leu His Asn 355 360 365 Gln Gly Ser Gly His Thr Leu Ile Ile His Ser Gln Asn Glu Glu Ile 370 375 380 Ile Arg Glu Phe Ala Leu Lys Lys Pro Val Ser Arg Ile Leu Val Asn 385 390 395 400 Ser Pro Gly Ser Leu Gly Gly Ile Gly Gly Ala Thr Asn Leu Val Pro 405 410 415 Ser Leu Thr Leu Gly Cys Gly Ala Val Gly Gly Ser Ala Thr Ser Asp 420 425 430 Asn Val Gly Pro Glu Asn Leu Phe Asn Ile Arg Lys Val Ala Tyr Gly 435 440 445 Thr Thr Thr Val Glu Glu Ile Arg Glu Ala Phe Gly Val Gly Ala Ala 450 455 460 Ser Ser Ser Ala Pro Ala Glu Pro Glu Asp Asn Glu Asp Val Gln Ala 465 470 475 480 Ile Val Lys Ala Ile Met Ala Lys Leu Asn Leu 485 490 79469PRTPropionibacterium freudenreichi 79Met Thr Ile Ser Pro Glu Leu Ile Gln Gln Val Val Arg Glu Thr Val 1 5 10 15 Arg Glu Val Ile Ser Arg Gln Asp Ser Gly Thr Asp Ala Pro Ser Gly 20 25 30 Thr Asp Gly Ile Phe Thr Asp Met Asn Ser Ala Val Asp Ala Ala Asp 35 40 45 Val Ala Trp Arg Gln Tyr Met Asp Cys Ser Leu Arg Asp Arg Asn Arg 50 55 60 Phe Ile Gln Ala Ile Arg Asp Val Ala Ser Glu Pro Asp Asn Leu Glu 65 70 75 80 Tyr Met Ala Thr Ala Thr Val Glu Glu Thr Gly Met Gly Asn Val Pro 85 90 95 His Lys Ile Leu Lys Asn Arg Tyr Ala Ala Leu Tyr Thr Pro Gly Thr 100 105 110 Glu Asp Ile Ile Thr Glu Ala Trp Ser Gly Asp Asp Gly Leu Thr Thr 115 120 125 Val Glu Phe Ser Pro Phe Gly Val Ile Gly Ala Ile Thr Pro Thr Thr 130 135 140 Asn Pro Thr Glu Thr Val Ile Asn Asn Thr Ile Gly Met Leu Ala Ala 145 150 155 160 Gly Asn Ala Val Val Phe Ser Pro His Pro Arg Ala Lys Lys Ile Thr 165 170 175 Leu Trp Leu Val Arg Lys Ile Asn Arg Ala Leu Ala Ala Ala Gly Ala 180 185 190 Pro Ala Asn Leu Val Val Thr Val Glu Glu Pro Ser Ile Asp Asn Thr 195 200 205 Asn Ala Met Met Ser His Glu Lys Val Arg Met Leu Val Ala Thr Gly 210 215 220 Gly Pro Gly Ile Val Lys Ala Val Leu Ser Ser Gly Lys Lys Ala Ile 225 230 235 240 Gly Ala Gly Ala Gly Asn Pro Pro Ala Val Val Asp Asp Thr Ala Asp 245 250 255 Ile Ala Lys Ala Ala Arg Asp Ile Val Asp Gly Ala Ser Phe Asp Asn 260 265 270 Asn Leu Pro Cys Thr Ala Glu Lys Glu Val Leu Ala Val Asp Ser Ile 275 280 285 Ala Asp Leu Leu Lys Phe Glu Met Leu Lys His Gly Cys Phe Glu Leu 290 295 300 Lys Asp Arg Ala Val Met Asp Lys Leu Ala Ala Leu Val Thr Lys Gly 305 310 315 320 Gln His Ala Asn Ala Ala Tyr Val Gly Lys Pro Ala Ala Gln Leu Ala 325 330 335 Ser Glu Val Gly Leu Ser Ala Pro Lys Asp Thr Arg Leu Leu Ile Cys 340 345 350 Glu Val Pro Phe Asp His Pro Phe Val Gln Val Glu Leu Met Met Pro 355 360 365 Ile Leu Pro Ile Val Arg Met Pro Asp Val Asp Thr Ala Ile Asp Lys 370 375 380 Ala Val Glu Val Glu His Gly Asn Arg His Thr Ala Val Met His Ser 385 390 395 400 Ser Asn Val Asn Ala Leu Thr Lys Met Gly Lys Leu Ile Gln Thr Thr 405 410 415 Ile Phe Val Lys Asn Gly Pro Ser Tyr Asn Gly Ile Gly Ile Asp Gly 420 425 430 Glu Gly Phe Pro Thr Phe Thr Ile Ala Gly Pro Thr Gly Glu Gly Leu 435 440 445 Thr Ser Ala Arg Cys Phe Ala Arg Lys Arg Arg Cys Val Leu Lys Ser 450 455 460 Gly Leu Asn Ile Arg 465 80858PRTClostridium acetobutylicum 80Met Lys Val Thr Asn Gln Lys Glu Leu Lys Gln Lys Leu Asn Glu Leu 1 5 10 15 Arg Glu Ala Gln Lys Lys Phe Ala Thr Tyr Thr Gln Glu Gln Val Asp 20 25 30 Lys Ile Phe Lys Gln Cys Ala Ile Ala Ala Ala Lys Glu Arg Ile Asn 35 40 45 Leu Ala Lys Leu Ala Val Glu Glu Thr Gly Ile Gly Leu Val Glu Asp 50 55 60 Lys Ile Ile Lys Asn His Phe Ala Ala Glu Tyr Ile Tyr Asn Lys Tyr 65 70 75 80 Lys Asn Glu Lys Thr Cys Gly Ile Ile Asp His Asp Asp Ser Leu Gly 85 90 95 Ile Thr Lys Val Ala Glu Pro Ile Gly Ile Val Ala Ala Ile Val Pro 100 105 110 Thr Thr Asn Pro Thr Ser Thr Ala Ile Phe Lys Ser Leu Ile Ser Leu 115 120 125 Lys Thr Arg Asn Ala Ile Phe Phe Ser Pro His Pro Arg Ala Lys Lys 130 135 140 Ser Thr Ile Ala Ala Ala Lys Leu Ile Leu Asp Ala Ala Val Lys Ala 145 150 155 160 Gly Ala Pro Lys Asn Ile Ile Gly Trp Ile Asp Glu Pro Ser Ile Glu 165 170 175 Leu Ser Gln Asp Leu Met Ser Glu Ala Asp Ile Ile Leu Ala Thr Gly 180 185 190 Gly Pro Ser Met Val Lys Ala Ala Tyr Ser Ser Gly Lys Pro Ala Ile 195 200 205 Gly Val Gly Ala Gly Asn Thr Pro Ala Ile Ile Asp Glu Ser Ala Asp 210 215 220 Ile Asp Met Ala Val Ser Ser Ile Ile Leu Ser Lys Thr Tyr Asp Asn 225 230 235 240 Gly Val Ile Cys Ala Ser Glu Gln Ser Ile Leu Val Met Asn Ser Ile 245 250 255 Tyr Glu Lys Val Lys Glu Glu Phe Val Lys Arg Gly Ser Tyr Ile Leu 260 265 270 Asn Gln Asn Glu Ile Ala Lys Ile Lys Glu Thr Met Phe Lys Asn Gly 275 280 285 Ala Ile Asn Ala Asp Ile Val Gly Lys Ser Ala Tyr Ile Ile Ala Lys 290 295 300 Met Ala Gly Ile Glu Val Pro Gln Thr Thr Lys Ile Leu Ile Gly Glu 305 310 315 320 Val Gln Ser Val Glu Lys Ser Glu Leu Phe Ser His Glu Lys Leu Ser 325 330 335 Pro Val Leu Ala Met Tyr Lys Val Lys Asp Phe Asp Glu Ala Leu Lys 340 345 350 Lys Ala Gln Arg Leu Ile Glu Leu Gly Gly Ser Gly His Thr Ser Ser 355 360 365 Leu Tyr Ile Asp Ser Gln Asn Asn Lys Asp Lys Val Lys Glu Phe Gly 370 375 380 Leu Ala Met Lys Thr Ser Arg Thr Phe Ile Asn Met Pro Ser Ser Gln 385 390 395 400 Gly Ala Ser Gly Asp Leu Tyr Asn Phe Ala Ile Ala Pro Ser Phe Thr 405 410 415 Leu Gly Cys Gly Thr Trp Gly Gly Asn Ser Val Ser Gln Asn Val Glu 420 425 430 Pro Lys His Leu Leu Asn Ile Lys Ser Val Ala Glu Arg Arg Glu Asn 435 440 445 Met Leu Trp Phe Lys Val Pro Gln Lys Ile Tyr Phe Lys Tyr Gly Cys 450 455 460 Leu Arg Phe Ala Leu Lys Glu Leu Lys Asp Met Asn Lys Lys Arg Ala 465 470 475 480 Phe Ile Val Thr Asp Lys Asp Leu Phe Lys Leu Gly Tyr Val Asn Lys 485 490 495 Ile Thr Lys Val Leu Asp Glu Ile Asp Ile Lys Tyr Ser Ile Phe Thr 500 505 510 Asp Ile Lys Ser Asp Pro Thr Ile Asp Ser Val Lys Lys Gly Ala Lys 515 520 525 Glu Met Leu Asn Phe Glu Pro Asp Thr Ile Ile Ser Ile Gly Gly Gly 530 535 540 Ser Pro Met Asp Ala Ala Lys Val Met His Leu Leu Tyr Glu Tyr Pro 545 550 555 560 Glu Ala Glu Ile Glu Asn Leu Ala Ile Asn Phe Met Asp Ile Arg Lys 565 570 575 Arg Ile Cys Asn Phe Pro Lys Leu Gly Thr Lys Ala Ile Ser Val Ala 580 585 590 Ile Pro Thr Thr Ala Gly Thr Gly Ser Glu Ala Thr Pro Phe Ala Val 595 600 605 Ile Thr Asn Asp Glu Thr Gly Met Lys Tyr Pro Leu Thr Ser Tyr Glu 610 615 620 Leu Thr Pro Asn Met Ala Ile Ile Asp Thr Glu Leu Met Leu Asn Met 625 630 635 640 Pro Arg Lys Leu Thr Ala Ala Thr Gly Ile Asp Ala Leu Val His Ala 645 650 655 Ile Glu Ala Tyr Val Ser Val Met Ala Thr Asp Tyr Thr Asp Glu Leu 660 665 670 Ala Leu Arg Ala Ile Lys Met Ile Phe Lys Tyr Leu Pro Arg Ala Tyr 675 680 685 Lys Asn Gly Thr Asn Asp Ile Glu Ala Arg Glu Lys Met Ala His Ala 690 695 700 Ser Asn Ile Ala Gly Met Ala Phe Ala Asn Ala Phe Leu Gly Val Cys 705 710 715 720 His Ser Met Ala His Lys Leu Gly Ala Met His His Val Pro His Gly 725 730 735 Ile Ala Cys Ala Val Leu Ile Glu Glu Val Ile Lys Tyr Asn Ala Thr 740 745 750 Asp Cys Pro Thr Lys Gln Thr Ala Phe Pro Gln Tyr Lys Ser Pro Asn 755 760 765 Ala Lys Arg Lys Tyr Ala Glu Ile Ala Glu Tyr Leu Asn Leu Lys Gly 770 775 780 Thr Ser Asp Thr Glu Lys Val Thr Ala Leu Ile Glu Ala Ile Ser Lys 785 790 795 800 Leu Lys Ile Asp Leu Ser Ile Pro Gln Asn Ile Ser Ala Ala Gly Ile 805 810 815 Asn Lys Lys Asp Phe Tyr Asn Thr Leu Asp Lys Met Ser Glu Leu Ala 820 825 830 Phe Asp Asp Gln Cys Thr Thr Ala Asn Pro Arg Tyr Pro Leu Ile Ser 835 840 845 Glu Leu Lys Asp Ile Tyr Ile Lys Ser Phe 850 855 81862PRTClostridium acetobutylicum 81Met Lys Val Thr Thr Val Lys Glu Leu Asp Glu Lys Leu Lys Val Ile 1 5 10 15 Lys Glu Ala Gln Lys Lys Phe Ser Cys Tyr Ser Gln Glu Met Val Asp 20 25 30 Glu Ile Phe Arg Asn Ala Ala Met Ala Ala Ile Asp Ala Arg Ile Glu 35 40 45 Leu Ala Lys Ala Ala Val Leu Glu Thr Gly Met Gly Leu Val Glu Asp 50 55 60 Lys Val Ile Lys Asn His Phe Ala Gly Glu Tyr Ile Tyr Asn Lys Tyr 65 70 75 80 Lys Asp Glu Lys Thr Cys Gly Ile Ile Glu Arg Asn Glu Pro Tyr Gly 85 90 95 Ile Thr Lys Ile Ala Glu Pro Ile Gly Val Val Ala Ala Ile Ile Pro 100 105 110 Val Thr Asn Pro Thr Ser Thr Thr Ile Phe Lys Ser Leu Ile Ser Leu 115 120 125 Lys Thr Arg Asn Gly Ile Phe Phe Ser Pro His Pro Arg Ala Lys Lys 130 135 140 Ser Thr Ile Leu Ala Ala Lys Thr Ile Leu Asp Ala Ala Val Lys Ser 145 150 155 160 Gly Ala Pro Glu Asn Ile Ile Gly Trp Ile Asp Glu Pro Ser Ile Glu 165 170 175 Leu Thr Gln Tyr Leu Met Gln Lys Ala Asp Ile Thr Leu Ala Thr Gly 180 185 190 Gly Pro Ser Leu Val Lys Ser Ala Tyr Ser Ser Gly Lys Pro Ala Ile 195 200

205 Gly Val Gly Pro Gly Asn Thr Pro Val Ile Ile Asp Glu Ser Ala His 210 215 220 Ile Lys Met Ala Val Ser Ser Ile Ile Leu Ser Lys Thr Tyr Asp Asn 225 230 235 240 Gly Val Ile Cys Ala Ser Glu Gln Ser Val Ile Val Leu Lys Ser Ile 245 250 255 Tyr Asn Lys Val Lys Asp Glu Phe Gln Glu Arg Gly Ala Tyr Ile Ile 260 265 270 Lys Lys Asn Glu Leu Asp Lys Val Arg Glu Val Ile Phe Lys Asp Gly 275 280 285 Ser Val Asn Pro Lys Ile Val Gly Gln Ser Ala Tyr Thr Ile Ala Ala 290 295 300 Met Ala Gly Ile Lys Val Pro Lys Thr Thr Arg Ile Leu Ile Gly Glu 305 310 315 320 Val Thr Ser Leu Gly Glu Glu Glu Pro Phe Ala His Glu Lys Leu Ser 325 330 335 Pro Val Leu Ala Met Tyr Glu Ala Asp Asn Phe Asp Asp Ala Leu Lys 340 345 350 Lys Ala Val Thr Leu Ile Asn Leu Gly Gly Leu Gly His Thr Ser Gly 355 360 365 Ile Tyr Ala Asp Glu Ile Lys Ala Arg Asp Lys Ile Asp Arg Phe Ser 370 375 380 Ser Ala Met Lys Thr Val Arg Thr Phe Val Asn Ile Pro Thr Ser Gln 385 390 395 400 Gly Ala Ser Gly Asp Leu Tyr Asn Phe Arg Ile Pro Pro Ser Phe Thr 405 410 415 Leu Gly Cys Gly Phe Trp Gly Gly Asn Ser Val Ser Glu Asn Val Gly 420 425 430 Pro Lys His Leu Leu Asn Ile Lys Thr Val Ala Glu Arg Arg Glu Asn 435 440 445 Met Leu Trp Phe Arg Val Pro His Lys Val Tyr Phe Lys Phe Gly Cys 450 455 460 Leu Gln Phe Ala Leu Lys Asp Leu Lys Asp Leu Lys Lys Lys Arg Ala 465 470 475 480 Phe Ile Val Thr Asp Ser Asp Pro Tyr Asn Leu Asn Tyr Val Asp Ser 485 490 495 Ile Ile Lys Ile Leu Glu His Leu Asp Ile Asp Phe Lys Val Phe Asn 500 505 510 Lys Val Gly Arg Glu Ala Asp Leu Lys Thr Ile Lys Lys Ala Thr Glu 515 520 525 Glu Met Ser Ser Phe Met Pro Asp Thr Ile Ile Ala Leu Gly Gly Thr 530 535 540 Pro Glu Met Ser Ser Ala Lys Leu Met Trp Val Leu Tyr Glu His Pro 545 550 555 560 Glu Val Lys Phe Glu Asp Leu Ala Ile Lys Phe Met Asp Ile Arg Lys 565 570 575 Arg Ile Tyr Thr Phe Pro Lys Leu Gly Lys Lys Ala Met Leu Val Ala 580 585 590 Ile Thr Thr Ser Ala Gly Ser Gly Ser Glu Val Thr Pro Phe Ala Leu 595 600 605 Val Thr Asp Asn Asn Thr Gly Asn Lys Tyr Met Leu Ala Asp Tyr Glu 610 615 620 Met Thr Pro Asn Met Ala Ile Val Asp Ala Glu Leu Met Met Lys Met 625 630 635 640 Pro Lys Gly Leu Thr Ala Tyr Ser Gly Ile Asp Ala Leu Val Asn Ser 645 650 655 Ile Glu Ala Tyr Thr Ser Val Tyr Ala Ser Glu Tyr Thr Asn Gly Leu 660 665 670 Ala Leu Glu Ala Ile Arg Leu Ile Phe Lys Tyr Leu Pro Glu Ala Tyr 675 680 685 Lys Asn Gly Arg Thr Asn Glu Lys Ala Arg Glu Lys Met Ala His Ala 690 695 700 Ser Thr Met Ala Gly Met Ala Ser Ala Asn Ala Phe Leu Gly Leu Cys 705 710 715 720 His Ser Met Ala Ile Lys Leu Ser Ser Glu His Asn Ile Pro Ser Gly 725 730 735 Ile Ala Asn Ala Leu Leu Ile Glu Glu Val Ile Lys Phe Asn Ala Val 740 745 750 Asp Asn Pro Val Lys Gln Ala Pro Cys Pro Gln Tyr Lys Tyr Pro Asn 755 760 765 Thr Ile Phe Arg Tyr Ala Arg Ile Ala Asp Tyr Ile Lys Leu Gly Gly 770 775 780 Asn Thr Asp Glu Glu Lys Val Asp Leu Leu Ile Asn Lys Ile His Glu 785 790 795 800 Leu Lys Lys Ala Leu Asn Ile Pro Thr Ser Ile Lys Asp Ala Gly Val 805 810 815 Leu Glu Glu Asn Phe Tyr Ser Ser Leu Asp Arg Ile Ser Glu Leu Ala 820 825 830 Leu Asp Asp Gln Cys Thr Gly Ala Asn Pro Arg Phe Pro Leu Thr Ser 835 840 845 Glu Ile Lys Glu Met Tyr Ile Asn Cys Phe Lys Lys Gln Pro 850 855 860 82453PRTVibrio fluvialis 82Met Asn Lys Pro Gln Ser Trp Glu Ala Arg Ala Glu Thr Tyr Ser Leu 1 5 10 15 Tyr Gly Phe Thr Asp Met Pro Ser Leu His Gln Arg Gly Thr Val Val 20 25 30 Val Thr His Gly Glu Gly Pro Tyr Ile Val Asp Val Asn Gly Arg Arg 35 40 45 Tyr Leu Asp Ala Asn Ser Gly Leu Trp Asn Met Val Ala Gly Phe Asp 50 55 60 His Lys Gly Leu Ile Asp Ala Ala Lys Ala Gln Tyr Glu Arg Phe Pro 65 70 75 80 Gly Tyr His Ala Phe Phe Gly Arg Met Ser Asp Gln Thr Val Met Leu 85 90 95 Ser Glu Lys Leu Val Glu Val Ser Pro Phe Asp Ser Gly Arg Val Phe 100 105 110 Tyr Thr Asn Ser Gly Ser Glu Ala Asn Asp Thr Met Val Lys Met Leu 115 120 125 Trp Phe Leu His Ala Ala Glu Gly Lys Pro Gln Lys Arg Lys Ile Leu 130 135 140 Thr Arg Trp Asn Ala Tyr His Gly Val Thr Ala Val Ser Ala Ser Met 145 150 155 160 Thr Gly Lys Pro Tyr Asn Ser Val Phe Gly Leu Pro Leu Pro Gly Phe 165 170 175 Val His Leu Thr Cys Pro His Tyr Trp Arg Tyr Gly Glu Glu Gly Glu 180 185 190 Thr Glu Glu Gln Phe Val Ala Arg Leu Ala Arg Glu Leu Glu Glu Thr 195 200 205 Ile Gln Arg Glu Gly Ala Asp Thr Ile Ala Gly Phe Phe Ala Glu Pro 210 215 220 Val Met Gly Ala Gly Gly Val Ile Pro Pro Ala Lys Gly Tyr Phe Gln 225 230 235 240 Ala Ile Leu Pro Ile Leu Arg Lys Tyr Asp Ile Pro Val Ile Ser Asp 245 250 255 Glu Val Ile Cys Gly Phe Gly Arg Thr Gly Asn Thr Trp Gly Cys Val 260 265 270 Thr Tyr Asp Phe Thr Pro Asp Ala Ile Ile Ser Ser Lys Asn Leu Thr 275 280 285 Ala Gly Phe Phe Pro Met Gly Ala Val Ile Leu Gly Pro Glu Leu Ser 290 295 300 Lys Arg Leu Glu Thr Ala Ile Glu Ala Ile Glu Glu Phe Pro His Gly 305 310 315 320 Phe Thr Ala Ser Gly His Pro Val Gly Cys Ala Ile Ala Leu Lys Ala 325 330 335 Ile Asp Val Val Met Asn Glu Gly Leu Ala Glu Asn Val Arg Arg Leu 340 345 350 Ala Pro Arg Phe Glu Glu Arg Leu Lys His Ile Ala Glu Arg Pro Asn 355 360 365 Ile Gly Glu Tyr Arg Gly Ile Gly Phe Met Trp Ala Leu Glu Ala Val 370 375 380 Lys Asp Lys Ala Ser Lys Thr Pro Phe Asp Gly Asn Leu Ser Val Ser 385 390 395 400 Glu Arg Ile Ala Asn Thr Cys Thr Asp Leu Gly Leu Ile Cys Arg Pro 405 410 415 Leu Gly Gln Ser Val Val Leu Cys Pro Pro Phe Ile Leu Thr Glu Ala 420 425 430 Gln Met Asp Glu Met Phe Asp Lys Leu Glu Lys Ala Leu Asp Lys Val 435 440 445 Phe Ala Glu Val Ala 450 83449PRTBacillus weihenstephanensis 83Met Gln Ala Thr Glu Gln Thr Gln Ser Leu Lys Lys Thr Asp Glu Lys 1 5 10 15 Tyr Leu Trp His Ala Met Arg Gly Ala Ala Pro Ser Pro Thr Asn Leu 20 25 30 Ile Ile Thr Lys Ala Glu Gly Ala Trp Val Thr Asp Ile Asp Gly Asn 35 40 45 Arg Tyr Leu Asp Gly Met Ser Gly Leu Trp Cys Val Asn Val Gly Tyr 50 55 60 Gly Arg Lys Glu Leu Ala Arg Ala Ala Phe Glu Gln Leu Glu Glu Met 65 70 75 80 Pro Tyr Phe Pro Leu Thr Gln Ser His Val Pro Ala Ile Lys Leu Ala 85 90 95 Glu Lys Leu Asn Glu Trp Leu Asp Asp Glu Tyr Val Ile Phe Phe Ser 100 105 110 Asn Ser Gly Ser Glu Ala Asn Glu Thr Ala Phe Lys Ile Ala Arg Gln 115 120 125 Tyr His Gln Gln Lys Gly Asp His Gly Arg Tyr Lys Phe Ile Ser Arg 130 135 140 Tyr Arg Ala Tyr His Gly Asn Ser Met Gly Ala Leu Ala Ala Thr Gly 145 150 155 160 Gln Ala Gln Arg Lys Tyr Lys Tyr Glu Pro Leu Gly Gln Gly Phe Leu 165 170 175 His Val Ala Pro Pro Asp Thr Tyr Arg Asn Pro Glu Asp Val His Thr 180 185 190 Leu Ala Ser Ala Glu Glu Ile Asp Arg Val Met Thr Trp Glu Leu Ser 195 200 205 Gln Thr Val Ala Gly Val Ile Met Glu Pro Ile Ile Thr Gly Gly Gly 210 215 220 Ile Leu Met Pro Pro Asp Gly Tyr Met Gly Lys Val Lys Glu Ile Cys 225 230 235 240 Glu Lys His Gly Ala Leu Leu Ile Cys Asp Glu Val Ile Cys Gly Phe 245 250 255 Gly Arg Thr Gly Lys Pro Phe Gly Phe Met Asn Tyr Gly Val Lys Pro 260 265 270 Asp Ile Ile Thr Met Ala Lys Gly Ile Thr Ser Ala Tyr Leu Pro Leu 275 280 285 Ser Ala Thr Ala Val Arg Arg Glu Val Tyr Glu Ala Phe Val Gly Ser 290 295 300 Asp Asp Tyr Asp Arg Phe Arg His Val Asn Thr Phe Gly Gly Asn Pro 305 310 315 320 Ala Ala Cys Ala Leu Ala Leu Lys Asn Leu Glu Ile Met Glu Asn Glu 325 330 335 Lys Leu Ile Glu Arg Ser Lys Glu Leu Gly Glu Arg Leu Leu Tyr Glu 340 345 350 Leu Glu Asp Val Lys Glu His Pro Asn Val Gly Asp Val Arg Gly Lys 355 360 365 Gly Leu Leu Leu Gly Ile Glu Leu Val Glu Asp Lys Gln Thr Lys Glu 370 375 380 Pro Ala Ser Ile Glu Lys Met Asn Lys Val Ile Asn Ala Cys Lys Glu 385 390 395 400 Lys Gly Leu Ile Ile Gly Lys Asn Gly Asp Thr Val Ala Gly Tyr Asn 405 410 415 Asn Ile Leu Gln Leu Ala Pro Pro Leu Ser Ile Thr Glu Glu Asp Phe 420 425 430 Thr Phe Ile Val Lys Thr Met Lys Glu Cys Leu Ser Arg Ile Asn Gly 435 440 445 Gln 84456PRTPseudomonas aeruginosa 84Met Asn Ser Gln Ile Thr Asn Ala Lys Thr Arg Glu Trp Gln Ala Leu 1 5 10 15 Ser Arg Asp His His Leu Pro Pro Phe Thr Asp Tyr Lys Gln Leu Asn 20 25 30 Glu Lys Gly Ala Arg Ile Ile Thr Lys Ala Glu Gly Val Tyr Ile Trp 35 40 45 Asp Ser Glu Gly Asn Lys Ile Leu Asp Ala Met Ala Gly Leu Trp Cys 50 55 60 Val Asn Val Gly Tyr Gly Arg Glu Glu Leu Val Gln Ala Ala Thr Arg 65 70 75 80 Gln Met Arg Glu Leu Pro Phe Tyr Asn Leu Phe Phe Gln Thr Ala His 85 90 95 Pro Pro Val Val Glu Leu Ala Lys Ala Ile Ala Asp Val Ala Pro Glu 100 105 110 Gly Met Asn His Val Phe Phe Thr Gly Ser Gly Ser Glu Ala Asn Asp 115 120 125 Thr Val Leu Arg Met Val Arg His Tyr Trp Ala Thr Lys Gly Gln Pro 130 135 140 Gln Lys Lys Val Val Ile Gly Arg Trp Asn Gly Tyr His Gly Ser Thr 145 150 155 160 Val Ala Gly Val Ser Leu Gly Gly Met Lys Ala Leu His Glu Gln Gly 165 170 175 Asp Phe Pro Ile Pro Gly Ile Val His Ile Ala Gln Pro Tyr Trp Tyr 180 185 190 Gly Glu Gly Gly Asp Met Ser Pro Asp Glu Phe Gly Val Trp Ala Ala 195 200 205 Glu Gln Leu Glu Lys Lys Ile Leu Glu Val Gly Glu Glu Asn Val Ala 210 215 220 Ala Phe Ile Ala Glu Pro Ile Gln Gly Ala Gly Gly Val Ile Val Pro 225 230 235 240 Pro Asp Thr Tyr Trp Pro Lys Ile Arg Glu Ile Leu Ala Lys Tyr Asp 245 250 255 Ile Leu Phe Ile Ala Asp Glu Val Ile Cys Gly Phe Gly Arg Thr Gly 260 265 270 Glu Trp Phe Gly Ser Gln Tyr Tyr Gly Asn Ala Pro Asp Leu Met Pro 275 280 285 Ile Ala Lys Gly Leu Thr Ser Gly Tyr Ile Pro Met Gly Gly Val Val 290 295 300 Val Arg Asp Glu Ile Val Glu Val Leu Asn Gln Gly Gly Glu Phe Tyr 305 310 315 320 His Gly Phe Thr Tyr Ser Gly His Pro Val Ala Ala Ala Val Ala Leu 325 330 335 Glu Asn Ile Arg Ile Leu Arg Glu Glu Lys Ile Ile Glu Lys Val Lys 340 345 350 Ala Glu Thr Ala Pro Tyr Leu Gln Lys Arg Trp Gln Glu Leu Ala Asp 355 360 365 His Pro Leu Val Gly Glu Ala Arg Gly Val Gly Met Val Ala Ala Leu 370 375 380 Glu Leu Val Lys Asn Lys Lys Thr Arg Glu Arg Phe Thr Asp Lys Gly 385 390 395 400 Val Gly Met Leu Cys Arg Glu His Cys Phe Arg Asn Gly Leu Ile Met 405 410 415 Arg Ala Val Gly Asp Thr Met Ile Ile Ser Pro Pro Leu Val Ile Asp 420 425 430 Pro Ser Gln Ile Asp Glu Leu Ile Thr Leu Ala Arg Lys Cys Leu Asp 435 440 445 Gln Thr Ala Ala Ala Val Leu Ala 450 455 85538PRTPenicillium Chrysogenum 85Met Thr Ala Leu Arg Ile Ser Thr Thr Leu Ser Arg Lys Ala Leu Thr 1 5 10 15 Ala Cys Arg Pro Arg Leu Phe Leu Gly Val Arg Thr Ser Val Arg Pro 20 25 30 Trp Gln Pro Phe Ser Thr Ser Thr Ser Thr Arg Tyr Ser Ile Thr Thr 35 40 45 Pro Leu Lys Ser Leu Ala Pro Lys Val Glu Arg Ser Gly Ser Lys Leu 50 55 60 Tyr Lys Asp Ala Asp Ala Ala Val Ala Asp Ile Lys Ser Gly Ser Thr 65 70 75 80 Ile Leu Ser Ser Gly Phe Gly Leu Cys Gly Val Ala Glu Thr Leu Ile 85 90 95 Asn Ala Met His Arg Arg Gly Ala Asp Gln Leu His Ser Leu Thr Ala 100 105 110 Val Ser Asn Asn Ala Gly Ala Ala Gly Lys Gly Gly Leu Ser Thr Leu 115 120 125 Ser Gln Asn Gly Gln Ile Asn Arg Leu Ile Leu Ser Tyr Leu Gly Asn 130 135 140 Asn Lys Ala Leu Glu Lys Lys Tyr Leu Thr Gly His Ile Ala Ile Glu 145 150 155 160 Leu Cys Pro Gln Gly Thr Leu Ala Glu Arg Leu Arg Ala Gly Gly Ala 165 170 175 Gly Ile Pro Ala Phe Phe Thr Pro Thr Gly Glu Gly Lys Ile Pro Val 180 185 190 Arg Met Asp Glu Ser Gly Lys Val Leu Glu Ser Gly Lys Pro Arg Glu 195 200 205 Thr Arg Glu Phe Asn Gly Lys Thr Tyr Leu Met Glu Glu Ala Leu Thr 210 215 220 Gly Asp Val Ala Ile Leu Arg Ala Trp Lys Ala Asp Glu Ala Gly Asn 225 230 235 240 Cys Val Phe Arg Tyr Thr Thr Lys Ala Phe Gly Pro Ile Met Ala Lys 245 250 255 Ala Ala Thr Leu Thr Ile Val Glu Ala Glu Asn Ile Val Pro Ile Gly 260 265 270 Ser Ile Asp Pro Asn Asp Val Asp

Leu Pro Gly Ile Phe Val Asp Arg 275 280 285 Ile Val Pro Ala Thr Asp Asp Lys His Ile Glu Ile Arg Lys Leu Arg 290 295 300 Ser Gly Glu Thr Thr Val Ala Gly Ser Gly Lys Asp Glu Ala Arg Ile 305 310 315 320 Gln Arg Glu Leu Ile Gly Arg Arg Ala Ala Lys Glu Leu Lys Pro Gly 325 330 335 Phe Tyr Val Asn Leu Gly Val Gly Ile Pro Thr Leu Ala Pro Ser Phe 340 345 350 Leu Pro Lys Asp Val Lys Val Trp Ile Gln Ser Glu Asn Gly Ile Leu 355 360 365 Gly Met Gly Asp Tyr Pro Thr Glu Gln Glu Leu Asp Pro Asp Ile Ile 370 375 380 Asn Ala Gly Lys Glu Thr Val Thr Leu Val Pro Gly Ala Ala Thr Phe 385 390 395 400 Asp Ser Ser Glu Ser Phe Gly Met Ile Arg Gly Gly His Val Asp Val 405 410 415 Ser Ile Leu Gly Ala Leu Gln Val Ser Ala Asn Gly Asp Leu Ala Asn 420 425 430 Tyr Met Ile Pro Gly Lys Val Phe Lys Gly Met Gly Gly Ala Met Asp 435 440 445 Leu Ile Ser Asn Pro Glu Lys Thr Lys Ile Val Val Ala Thr Ser His 450 455 460 Val Ala Lys Asp Gly Ser Pro Lys Ile Val Gln Lys Cys Ser Leu Pro 465 470 475 480 Leu Thr Gly Ala Asn Val Val Ser Thr Ile Ile Thr Asp Leu Cys Val 485 490 495 Phe Gln Val Asp Arg Ala Thr Gly Glu Leu Thr Leu Thr Glu Leu Ala 500 505 510 Pro Gly Val Glu Val Glu Glu Val Gln Ser Lys Thr Asp Ala Lys Phe 515 520 525 Thr Ile Ala Asp Thr Leu Glu Ile Met Glu 530 535 861362DNAVibrio fluvialisCDS(1)..(1362) 86atg aac aaa ccg caa agc tgg gaa gcc cgg gcc gag acc tat tcg ctc 48Met Asn Lys Pro Gln Ser Trp Glu Ala Arg Ala Glu Thr Tyr Ser Leu 1 5 10 15 tat ggt ttc acc gac atg cct tcg ctg cat cag cgc ggc acg gtc gtc 96Tyr Gly Phe Thr Asp Met Pro Ser Leu His Gln Arg Gly Thr Val Val 20 25 30 gtg acc cat ggc gag gga ccc tat atc gtc gat gtg aat ggc cgg cgt 144Val Thr His Gly Glu Gly Pro Tyr Ile Val Asp Val Asn Gly Arg Arg 35 40 45 tat ctg gac gcc aac tcg ggc ctg tgg aac atg gtc gcg ggc ttt gac 192Tyr Leu Asp Ala Asn Ser Gly Leu Trp Asn Met Val Ala Gly Phe Asp 50 55 60 cac aag ggg ctg atc gac gcc gcc aag gcc caa tac gag cgt ttt ccc 240His Lys Gly Leu Ile Asp Ala Ala Lys Ala Gln Tyr Glu Arg Phe Pro 65 70 75 80 ggt tat cac gcc ttt ttc ggc cgc atg tcc gat cag acg gta atg ctg 288Gly Tyr His Ala Phe Phe Gly Arg Met Ser Asp Gln Thr Val Met Leu 85 90 95 tcg gaa aag ctg gtc gag gtg tcg ccc ttt gat tcg ggc cgg gtg ttc 336Ser Glu Lys Leu Val Glu Val Ser Pro Phe Asp Ser Gly Arg Val Phe 100 105 110 tat aca aac tcg ggg tcc gag gcg aat gac acc atg gtc aag atg cta 384Tyr Thr Asn Ser Gly Ser Glu Ala Asn Asp Thr Met Val Lys Met Leu 115 120 125 tgg ttc ctg cat gca gcc gag ggc aaa ccg caa aag cgc aag atc ctg 432Trp Phe Leu His Ala Ala Glu Gly Lys Pro Gln Lys Arg Lys Ile Leu 130 135 140 acc cgc tgg aac gcc tat cac ggc gtg acc gcc gtt tcg gcc agc atg 480Thr Arg Trp Asn Ala Tyr His Gly Val Thr Ala Val Ser Ala Ser Met 145 150 155 160 acc ggc aag ccc tat aat tcg gtc ttt ggc ctg ccg ctg ccg ggc ttt 528Thr Gly Lys Pro Tyr Asn Ser Val Phe Gly Leu Pro Leu Pro Gly Phe 165 170 175 gtg cat ctg acc tgc ccg cat tac tgg cgc tat ggc gaa gag ggc gaa 576Val His Leu Thr Cys Pro His Tyr Trp Arg Tyr Gly Glu Glu Gly Glu 180 185 190 acc gaa gag cag ttc gtc gcc cgc ctc gcc cgc gag ctg gag gaa acg 624Thr Glu Glu Gln Phe Val Ala Arg Leu Ala Arg Glu Leu Glu Glu Thr 195 200 205 atc cag cgc gag ggc gcc gac acc atc gcc ggt ttc ttt gcc gaa ccg 672Ile Gln Arg Glu Gly Ala Asp Thr Ile Ala Gly Phe Phe Ala Glu Pro 210 215 220 gtg atg ggc gcg ggc ggc gtg att ccc ccg gcc aag ggc tat ttc cag 720Val Met Gly Ala Gly Gly Val Ile Pro Pro Ala Lys Gly Tyr Phe Gln 225 230 235 240 gcg atc ctg cca atc ctg cgc aaa tat gac atc ccg gtc atc tcg gac 768Ala Ile Leu Pro Ile Leu Arg Lys Tyr Asp Ile Pro Val Ile Ser Asp 245 250 255 gag gtg atc tgc ggt ttc gga cgc acc ggt aac acc tgg ggc tgc gtg 816Glu Val Ile Cys Gly Phe Gly Arg Thr Gly Asn Thr Trp Gly Cys Val 260 265 270 acc tat gac ttt aca ccc gat gca atc atc tcg tcc aag aat ctt aca 864Thr Tyr Asp Phe Thr Pro Asp Ala Ile Ile Ser Ser Lys Asn Leu Thr 275 280 285 gcg ggc ttt ttc ccc atg ggg gcg gtg atc ctt ggc ccg gaa ctt tcc 912Ala Gly Phe Phe Pro Met Gly Ala Val Ile Leu Gly Pro Glu Leu Ser 290 295 300 aaa cgg ctg gaa acc gca atc gag gcg atc gag gaa ttc ccc cat ggc 960Lys Arg Leu Glu Thr Ala Ile Glu Ala Ile Glu Glu Phe Pro His Gly 305 310 315 320 ttt acc gcc tcg ggc cat ccg gtc ggc tgt gct att gcg ctg aaa gca 1008Phe Thr Ala Ser Gly His Pro Val Gly Cys Ala Ile Ala Leu Lys Ala 325 330 335 atc gac gtg gtg atg aat gaa ggg ctg gct gag aac gtc cgc cgc ctt 1056Ile Asp Val Val Met Asn Glu Gly Leu Ala Glu Asn Val Arg Arg Leu 340 345 350 gcc ccc cgt ttc gag gaa agg ctg aaa cat atc gcc gag cgc ccg aac 1104Ala Pro Arg Phe Glu Glu Arg Leu Lys His Ile Ala Glu Arg Pro Asn 355 360 365 atc ggt gaa tat cgc ggc atc ggc ttc atg tgg gcg ctg gag gct gtc 1152Ile Gly Glu Tyr Arg Gly Ile Gly Phe Met Trp Ala Leu Glu Ala Val 370 375 380 aag gac aag gca agc aag acg ccg ttc gac ggc aac ctg tcg gtc agc 1200Lys Asp Lys Ala Ser Lys Thr Pro Phe Asp Gly Asn Leu Ser Val Ser 385 390 395 400 gag cgt atc gcc aat acc tgc acc gat ctg ggg ctg att tgc cgg ccg 1248Glu Arg Ile Ala Asn Thr Cys Thr Asp Leu Gly Leu Ile Cys Arg Pro 405 410 415 ctt ggt cag tcc gtc gtc ctt tgt ccg ccc ttt atc ctg acc gag gcg 1296Leu Gly Gln Ser Val Val Leu Cys Pro Pro Phe Ile Leu Thr Glu Ala 420 425 430 cag atg gat gag atg ttc gat aaa ctc gaa aaa gcc ctt gat aag gtc 1344Gln Met Asp Glu Met Phe Asp Lys Leu Glu Lys Ala Leu Asp Lys Val 435 440 445 ttt gcc gag gtt gcc tga 1362Phe Ala Glu Val Ala 450 87453PRTVibrio fluvialis 87Met Asn Lys Pro Gln Ser Trp Glu Ala Arg Ala Glu Thr Tyr Ser Leu 1 5 10 15 Tyr Gly Phe Thr Asp Met Pro Ser Leu His Gln Arg Gly Thr Val Val 20 25 30 Val Thr His Gly Glu Gly Pro Tyr Ile Val Asp Val Asn Gly Arg Arg 35 40 45 Tyr Leu Asp Ala Asn Ser Gly Leu Trp Asn Met Val Ala Gly Phe Asp 50 55 60 His Lys Gly Leu Ile Asp Ala Ala Lys Ala Gln Tyr Glu Arg Phe Pro 65 70 75 80 Gly Tyr His Ala Phe Phe Gly Arg Met Ser Asp Gln Thr Val Met Leu 85 90 95 Ser Glu Lys Leu Val Glu Val Ser Pro Phe Asp Ser Gly Arg Val Phe 100 105 110 Tyr Thr Asn Ser Gly Ser Glu Ala Asn Asp Thr Met Val Lys Met Leu 115 120 125 Trp Phe Leu His Ala Ala Glu Gly Lys Pro Gln Lys Arg Lys Ile Leu 130 135 140 Thr Arg Trp Asn Ala Tyr His Gly Val Thr Ala Val Ser Ala Ser Met 145 150 155 160 Thr Gly Lys Pro Tyr Asn Ser Val Phe Gly Leu Pro Leu Pro Gly Phe 165 170 175 Val His Leu Thr Cys Pro His Tyr Trp Arg Tyr Gly Glu Glu Gly Glu 180 185 190 Thr Glu Glu Gln Phe Val Ala Arg Leu Ala Arg Glu Leu Glu Glu Thr 195 200 205 Ile Gln Arg Glu Gly Ala Asp Thr Ile Ala Gly Phe Phe Ala Glu Pro 210 215 220 Val Met Gly Ala Gly Gly Val Ile Pro Pro Ala Lys Gly Tyr Phe Gln 225 230 235 240 Ala Ile Leu Pro Ile Leu Arg Lys Tyr Asp Ile Pro Val Ile Ser Asp 245 250 255 Glu Val Ile Cys Gly Phe Gly Arg Thr Gly Asn Thr Trp Gly Cys Val 260 265 270 Thr Tyr Asp Phe Thr Pro Asp Ala Ile Ile Ser Ser Lys Asn Leu Thr 275 280 285 Ala Gly Phe Phe Pro Met Gly Ala Val Ile Leu Gly Pro Glu Leu Ser 290 295 300 Lys Arg Leu Glu Thr Ala Ile Glu Ala Ile Glu Glu Phe Pro His Gly 305 310 315 320 Phe Thr Ala Ser Gly His Pro Val Gly Cys Ala Ile Ala Leu Lys Ala 325 330 335 Ile Asp Val Val Met Asn Glu Gly Leu Ala Glu Asn Val Arg Arg Leu 340 345 350 Ala Pro Arg Phe Glu Glu Arg Leu Lys His Ile Ala Glu Arg Pro Asn 355 360 365 Ile Gly Glu Tyr Arg Gly Ile Gly Phe Met Trp Ala Leu Glu Ala Val 370 375 380 Lys Asp Lys Ala Ser Lys Thr Pro Phe Asp Gly Asn Leu Ser Val Ser 385 390 395 400 Glu Arg Ile Ala Asn Thr Cys Thr Asp Leu Gly Leu Ile Cys Arg Pro 405 410 415 Leu Gly Gln Ser Val Val Leu Cys Pro Pro Phe Ile Leu Thr Glu Ala 420 425 430 Gln Met Asp Glu Met Phe Asp Lys Leu Glu Lys Ala Leu Asp Lys Val 435 440 445 Phe Ala Glu Val Ala 450 881362DNAArtificialVibrio fluvialis JS17 omega-aminotransferase codon optimised gene 88atgaataaac cacagtcttg ggaagctcgt gctgaaacct atagcctgta cggctttacc 60gatatgccgt ctctgcacca gcgtggtact gtagtggtaa cgcacggtga gggcccgtac 120atcgtggacg ttaatggccg ccgttacctg gatgcaaaca gcggcctgtg gaacatggtt 180gcgggcttcg accacaaagg cctgatcgat gccgcaaaag cgcagtacga acgcttcccg 240ggttatcacg cgttctttgg ccgtatgagc gaccagactg tgatgctgag cgaaaaactg 300gttgaagtgt ccccgttcga tagcggtcgt gtcttttaca ctaactctgg cagcgaggct 360aacgatacca tggttaagat gctgtggttc ctgcacgcag cggaaggcaa acctcagaaa 420cgtaaaattc tgacccgttg gaacgcttat cacggtgtga ctgctgtttc cgcatctatg 480accggtaaac cgtataacag cgtgttcggt ctgccgctgc ctggcttcgt gcatctgacc 540tgcccgcact actggcgtta tggtgaggaa ggcgaaactg aggaacagtt cgtggcgcgt 600ctggctcgtg aactggaaga aaccattcaa cgcgaaggtg cagatactat cgcgggcttc 660tttgcggagc ctgttatggg tgccggcggt gtgattccgc cggcgaaggg ctatttccag 720gcaatcctgc cgatcctgcg caagtacgac attccggtta tttctgacga agtgatctgc 780ggcttcggcc gcaccggtaa cacctggggc tgcgtgacgt atgacttcac tccggacgca 840atcattagct ctaaaaacct gactgcgggt ttcttcccta tgggcgccgt aatcctgggc 900ccagaactgt ctaagcgcct ggaaaccgcc atcgaggcaa tcgaagagtt cccgcacggt 960ttcactgcta gcggccatcc ggtaggctgc gcaatcgcgc tgaaggcgat cgatgttgtc 1020atgaacgagg gcctggcgga aaacgtgcgc cgcctggcgc cgcgttttga agaacgtctg 1080aaacacattg ctgagcgccc gaacattggc gaatatcgcg gcatcggttt catgtgggcc 1140ctggaagcag ttaaagataa agctagcaag accccgttcg acggcaacct gtccgtgagc 1200gaacgtatcg ctaatacctg tacggacctg ggtctgatct gccgtccgct gggtcagtcc 1260gtagttctgt gcccaccatt tatcctgacc gaagcgcaga tggatgaaat gttcgataaa 1320ctggagaaag ctctggataa agtgttcgct gaagtcgcgt aa 1362891350DNABacillus weihenstephanensisCDS(1)..(1350) 89gtg caa gcg acg gag caa aca caa agt ttg aaa aaa aca gat gaa aag 48Val Gln Ala Thr Glu Gln Thr Gln Ser Leu Lys Lys Thr Asp Glu Lys 1 5 10 15 tac ctt tgg cat gcg atg aga gga gca gcc cct agt cca acg aat tta 96Tyr Leu Trp His Ala Met Arg Gly Ala Ala Pro Ser Pro Thr Asn Leu 20 25 30 att atc aca aaa gca gaa ggg gca tgg gtg acg gat att gat gga aac 144Ile Ile Thr Lys Ala Glu Gly Ala Trp Val Thr Asp Ile Asp Gly Asn 35 40 45 cgt tat tta gac ggt atg tcc ggt ctt tgg tgc gtg aat gtt ggg tat 192Arg Tyr Leu Asp Gly Met Ser Gly Leu Trp Cys Val Asn Val Gly Tyr 50 55 60 ggt cga aaa gaa ctt gca aga gcg gcg ttt gaa cag ctt gaa gaa atg 240Gly Arg Lys Glu Leu Ala Arg Ala Ala Phe Glu Gln Leu Glu Glu Met 65 70 75 80 ccg tat ttc cct ctg act caa agt cat gtt cct gct att aaa tta gca 288Pro Tyr Phe Pro Leu Thr Gln Ser His Val Pro Ala Ile Lys Leu Ala 85 90 95 gaa aaa ttg aat gaa tgg ctt gat gat gaa tac gtc att ttc ttt tct 336Glu Lys Leu Asn Glu Trp Leu Asp Asp Glu Tyr Val Ile Phe Phe Ser 100 105 110 aac agt gga tcg gaa gcg aat gaa aca gca ttt aaa att gct cgt caa 384Asn Ser Gly Ser Glu Ala Asn Glu Thr Ala Phe Lys Ile Ala Arg Gln 115 120 125 tat cat caa caa aaa ggt gat cat gga cgc tat aag ttt att tcc cgc 432Tyr His Gln Gln Lys Gly Asp His Gly Arg Tyr Lys Phe Ile Ser Arg 130 135 140 tac cgc gct tat cac ggt aac tca atg gga gct ctt gca gca aca ggt 480Tyr Arg Ala Tyr His Gly Asn Ser Met Gly Ala Leu Ala Ala Thr Gly 145 150 155 160 caa gca cag cga aag tat aaa tat gaa cca ctc ggg caa gga ttc ctg 528Gln Ala Gln Arg Lys Tyr Lys Tyr Glu Pro Leu Gly Gln Gly Phe Leu 165 170 175 cat gta gca ccg cct gat acg tat cga aat cca gag gat gtt cat aca 576His Val Ala Pro Pro Asp Thr Tyr Arg Asn Pro Glu Asp Val His Thr 180 185 190 ctg gca agt gct gag gaa atc gat cgt gtc atg aca tgg gag tta agc 624Leu Ala Ser Ala Glu Glu Ile Asp Arg Val Met Thr Trp Glu Leu Ser 195 200 205 caa aca gta gcc ggt gtg att atg gag cca atc att act ggg ggc gga 672Gln Thr Val Ala Gly Val Ile Met Glu Pro Ile Ile Thr Gly Gly Gly 210 215 220 att tta atg cct cct gat gga tat atg gga aaa gta aaa gaa att tgc 720Ile Leu Met Pro Pro Asp Gly Tyr Met Gly Lys Val Lys Glu Ile Cys 225 230 235 240 gag aag cac ggt gcg ttg ctc att tgt gat gaa gtt ata tgt gga ttt 768Glu Lys His Gly Ala Leu Leu Ile Cys Asp Glu Val Ile Cys Gly Phe 245 250 255 ggc cgg aca ggg aag cca ttt gga ttt atg aat tat ggc gtc aaa cca 816Gly Arg Thr Gly Lys Pro Phe Gly Phe Met Asn Tyr Gly Val Lys Pro 260 265 270 gat atc att aca atg gca aaa ggt att aca agt gcg tat ctt cct ttg 864Asp Ile Ile Thr Met Ala Lys Gly Ile Thr Ser Ala Tyr Leu Pro Leu 275 280 285 tca gca aca gca gtt aga cga gag gtt tat gag gca ttc gta ggt agt 912Ser Ala Thr Ala Val Arg Arg Glu Val Tyr Glu Ala Phe Val Gly Ser 290 295 300 gat gat tat gat cgc ttc cgc cat gta aat acg ttc gga ggg aat cct 960Asp Asp Tyr Asp Arg Phe Arg His Val Asn Thr Phe Gly Gly Asn Pro 305 310 315 320 gct gct tgc gct tta gct ttg aag aat tta gaa att atg gag aat gag

1008Ala Ala Cys Ala Leu Ala Leu Lys Asn Leu Glu Ile Met Glu Asn Glu 325 330 335 aaa ctc att gaa cgt tcc aaa gaa ttg ggt gaa cga ctg tta tat gag 1056Lys Leu Ile Glu Arg Ser Lys Glu Leu Gly Glu Arg Leu Leu Tyr Glu 340 345 350 cta gag gat gta aaa gag cat cca aac gta ggg gat gtt cgc gga aag 1104Leu Glu Asp Val Lys Glu His Pro Asn Val Gly Asp Val Arg Gly Lys 355 360 365 ggc ctt ctt tta ggc att gaa cta gtg gaa gat aag caa aca aaa gaa 1152Gly Leu Leu Leu Gly Ile Glu Leu Val Glu Asp Lys Gln Thr Lys Glu 370 375 380 ccg gct tcc att gaa aag atg aac aaa gtc atc aat gct tgt aaa gaa 1200Pro Ala Ser Ile Glu Lys Met Asn Lys Val Ile Asn Ala Cys Lys Glu 385 390 395 400 aaa ggt cta att att ggt aaa aat ggt gac act gtc gca ggt tac aat 1248Lys Gly Leu Ile Ile Gly Lys Asn Gly Asp Thr Val Ala Gly Tyr Asn 405 410 415 aat att ttg cag ctt gca cct cca tta agc atc aca gag gaa gac ttt 1296Asn Ile Leu Gln Leu Ala Pro Pro Leu Ser Ile Thr Glu Glu Asp Phe 420 425 430 act ttt atc gtt aaa aca atg aaa gaa tgt tta tcc cgc att aac ggg 1344Thr Phe Ile Val Lys Thr Met Lys Glu Cys Leu Ser Arg Ile Asn Gly 435 440 445 cag taa 1350Gln 90449PRTBacillus weihenstephanensis 90Val Gln Ala Thr Glu Gln Thr Gln Ser Leu Lys Lys Thr Asp Glu Lys 1 5 10 15 Tyr Leu Trp His Ala Met Arg Gly Ala Ala Pro Ser Pro Thr Asn Leu 20 25 30 Ile Ile Thr Lys Ala Glu Gly Ala Trp Val Thr Asp Ile Asp Gly Asn 35 40 45 Arg Tyr Leu Asp Gly Met Ser Gly Leu Trp Cys Val Asn Val Gly Tyr 50 55 60 Gly Arg Lys Glu Leu Ala Arg Ala Ala Phe Glu Gln Leu Glu Glu Met 65 70 75 80 Pro Tyr Phe Pro Leu Thr Gln Ser His Val Pro Ala Ile Lys Leu Ala 85 90 95 Glu Lys Leu Asn Glu Trp Leu Asp Asp Glu Tyr Val Ile Phe Phe Ser 100 105 110 Asn Ser Gly Ser Glu Ala Asn Glu Thr Ala Phe Lys Ile Ala Arg Gln 115 120 125 Tyr His Gln Gln Lys Gly Asp His Gly Arg Tyr Lys Phe Ile Ser Arg 130 135 140 Tyr Arg Ala Tyr His Gly Asn Ser Met Gly Ala Leu Ala Ala Thr Gly 145 150 155 160 Gln Ala Gln Arg Lys Tyr Lys Tyr Glu Pro Leu Gly Gln Gly Phe Leu 165 170 175 His Val Ala Pro Pro Asp Thr Tyr Arg Asn Pro Glu Asp Val His Thr 180 185 190 Leu Ala Ser Ala Glu Glu Ile Asp Arg Val Met Thr Trp Glu Leu Ser 195 200 205 Gln Thr Val Ala Gly Val Ile Met Glu Pro Ile Ile Thr Gly Gly Gly 210 215 220 Ile Leu Met Pro Pro Asp Gly Tyr Met Gly Lys Val Lys Glu Ile Cys 225 230 235 240 Glu Lys His Gly Ala Leu Leu Ile Cys Asp Glu Val Ile Cys Gly Phe 245 250 255 Gly Arg Thr Gly Lys Pro Phe Gly Phe Met Asn Tyr Gly Val Lys Pro 260 265 270 Asp Ile Ile Thr Met Ala Lys Gly Ile Thr Ser Ala Tyr Leu Pro Leu 275 280 285 Ser Ala Thr Ala Val Arg Arg Glu Val Tyr Glu Ala Phe Val Gly Ser 290 295 300 Asp Asp Tyr Asp Arg Phe Arg His Val Asn Thr Phe Gly Gly Asn Pro 305 310 315 320 Ala Ala Cys Ala Leu Ala Leu Lys Asn Leu Glu Ile Met Glu Asn Glu 325 330 335 Lys Leu Ile Glu Arg Ser Lys Glu Leu Gly Glu Arg Leu Leu Tyr Glu 340 345 350 Leu Glu Asp Val Lys Glu His Pro Asn Val Gly Asp Val Arg Gly Lys 355 360 365 Gly Leu Leu Leu Gly Ile Glu Leu Val Glu Asp Lys Gln Thr Lys Glu 370 375 380 Pro Ala Ser Ile Glu Lys Met Asn Lys Val Ile Asn Ala Cys Lys Glu 385 390 395 400 Lys Gly Leu Ile Ile Gly Lys Asn Gly Asp Thr Val Ala Gly Tyr Asn 405 410 415 Asn Ile Leu Gln Leu Ala Pro Pro Leu Ser Ile Thr Glu Glu Asp Phe 420 425 430 Thr Phe Ile Val Lys Thr Met Lys Glu Cys Leu Ser Arg Ile Asn Gly 435 440 445 Gln 911350DNAArtificialB. weihenstephanensis KBAB4 aminotransferase codon-optimised gene 91atgcaggcta ccgaacaaac ccaatctctg aaaaagactg acgaaaaata tctgtggcac 60gcgatgcgcg gtgcagctcc gtctccgacc aacctgatta ttaccaaagc tgaaggcgcg 120tgggtgaccg acattgacgg taaccgttat ctggatggca tgagcggcct gtggtgtgtt 180aatgtcggtt atggccgtaa ggagctggcg cgcgcggcat ttgaacaact ggaagaaatg 240ccgtacttcc cgctgactca aagccatgtg ccggctatca aactggcgga aaaactgaac 300gaatggctgg acgacgaata cgtgattttc ttctctaatt ctggctccga agcaaacgaa 360accgcattca aaatcgcccg tcaatatcac cagcagaaag gtgaccacgg ccgctataaa 420ttcatcagcc gttatcgtgc ataccatggt aattctatgg gtgcgctggc tgctaccggt 480caggctcagc gcaaatacaa gtacgaaccg ctgggtcagg gttttctgca cgttgcacca 540ccggatacct accgtaaccc ggaagacgtc cacaccctgg cttctgccga agaaatcgat 600cgtgttatga cctgggagct gtcccagact gttgcgggtg ttatcatgga acctattatt 660accggtggtg gcattctgat gccgccggac ggttatatgg gtaaagtcaa ggaaatctgc 720gaaaaacacg gcgcgctgct gatctgcgat gaagttatct gtggcttcgg tcgcaccggc 780aaaccatttg gcttcatgaa ttatggcgta aaacctgaca ttattaccat ggctaaaggc 840attacttccg cttatctgcc gctgagcgcg accgcagttc gccgcgaagt ttatgaagcg 900tttgttggtt ctgatgatta cgaccgtttc cgtcatgtaa acacgtttgg cggtaaccca 960gcggcatgtg cgctggcgct gaaaaacctg gaaatcatgg aaaacgaaaa gctgatcgaa 1020cgtagcaaag aactgggtga acgtctgctg tacgaactgg aagatgtcaa agaacacccg 1080aacgtgggcg atgttcgcgg taaaggcctg ctgctgggta ttgaactggt tgaagacaaa 1140cagaccaagg aaccggcttc cattgaaaag atgaacaaag tgattaacgc gtgcaaagag 1200aaaggcctga tcattggtaa gaacggtgat accgtggcag gttataacaa cattctgcag 1260ctggcgccgc ctctgagcat cactgaagaa gatttcacct tcatcgtcaa aactatgaag 1320gagtgcctga gccgcatcaa tggtcagtaa 135092255PRTSaccharomyces cerevisiae 92Met Ala Glu Leu Arg Val Leu Val Ala Val Lys Arg Val Ile Asp Tyr 1 5 10 15 Ala Val Lys Ile Arg Val Lys Pro Asp Arg Thr Gly Val Val Thr Asp 20 25 30 Gly Val Lys His Ser Met Asn Pro Phe Cys Glu Ile Ala Val Glu Glu 35 40 45 Ala Val Arg Leu Lys Glu Lys Lys Leu Val Lys Glu Val Ile Ala Val 50 55 60 Ser Cys Gly Pro Ala Gln Cys Gln Glu Thr Ile Arg Thr Ala Leu Ala 65 70 75 80 Met Gly Ala Asp Arg Gly Ile His Val Glu Val Pro Pro Ala Glu Ala 85 90 95 Glu Arg Leu Gly Pro Leu Gln Val Ala Arg Val Leu Ala Lys Leu Ala 100 105 110 Glu Lys Glu Lys Val Asp Leu Val Leu Leu Gly Lys Gln Ala Ile Asp 115 120 125 Asp Asp Cys Asn Gln Thr Gly Gln Met Thr Ala Gly Phe Leu Asp Trp 130 135 140 Pro Gln Gly Thr Phe Ala Ser Gln Val Thr Leu Glu Gly Asp Lys Leu 145 150 155 160 Lys Val Glu Arg Glu Ile Asp Gly Gly Leu Glu Thr Leu Arg Leu Lys 165 170 175 Leu Pro Ala Val Val Thr Ala Asp Leu Arg Leu Asn Glu Pro Arg Tyr 180 185 190 Ala Thr Leu Pro Asn Ile Met Lys Ala Lys Lys Lys Lys Ile Glu Val 195 200 205 Ile Lys Pro Gly Asp Leu Gly Val Asp Leu Thr Ser Lys Leu Ser Val 210 215 220 Ile Ser Val Glu Asp Pro Pro Gln Arg Thr Ala Gly Val Lys Val Glu 225 230 235 240 Thr Thr Glu Asp Leu Val Ala Lys Leu Lys Glu Ile Gly Arg Ile 245 250 255 93860DNAartificialMicroscilla marina 93ggtaccggat ccctaacagg aggaattaac catggtccag aaagacctgt tcaaagacaa 60agttgttctg gtaactggcg gtcgttctgg tatcggttac gcaatttctc agatgatgct 120ggaactgggt gcgaaagttg ttatcgcttc tcgcaaagag gatctgctga aacaggctgc 180tgaagaactg tctcagtacg gtgaatgctc ctacctggct tgcgacatcc gtgaatctga 240ccagcgtact gcgctgatgg agaagatcaa agctgacaac ggtcgtctgg atatcctggt 300taacaacgct ggcggtcagt tcccggcacc ggcagaaacc atctctgaaa acggctggga 360cgctgttatc aacaacaacc tgaacggtac tttccacatg tcctctctga tggcgcgtca 420cttcttcatc ccgcagaaag aaggttgcat catcaacatc atcgctaaca tctaccgcgg 480tttcccgtct atggttcaca ccggtgcagc acgtgctggc gttgaaaacc tgaccaaaac 540tctggcggtt gagtggggcg actacaacat ccgcgttaac gcgattgctc cgggtactat 600cgaatcttcc ggtctggata cttacccgaa gccggtacag gacatcctgg gtgaagcgcg 660tgctgcagta ccactgaaac gcttcggtac tgttactgaa atcgctaaca ccacttgctt 720cctggcttct ccgctggctt cttacatctc cggtgtttct ctgtacgttg acggtgcaca 780gcacctgaac ggtggtgacc cgatgaagct gactcgcctg atgcgtgcat tcaccaagtc 840tcgtgagctc taataagctt 86094273PRTMicroscilla marina 94Met Val Gln Lys Asp Leu Phe Lys Asp Lys Val Val Leu Val Thr Gly 1 5 10 15 Gly Arg Ser Gly Ile Gly Tyr Ala Ile Ser Gln Met Met Leu Glu Leu 20 25 30 Gly Ala Lys Val Val Ile Ala Ser Arg Lys Glu Asp Leu Leu Lys Gln 35 40 45 Ala Ala Glu Glu Leu Ser Gln Tyr Gly Glu Cys Ser Tyr Leu Ala Cys 50 55 60 Asp Ile Arg Glu Ser Asp Gln Arg Thr Ala Leu Met Glu Lys Ile Lys 65 70 75 80 Ala Asp Asn Gly Arg Leu Asp Ile Leu Val Asn Asn Ala Gly Gly Gln 85 90 95 Phe Pro Ala Pro Ala Glu Thr Ile Ser Glu Asn Gly Trp Asp Ala Val 100 105 110 Ile Asn Asn Asn Leu Asn Gly Thr Phe His Met Ser Ser Leu Met Ala 115 120 125 Arg His Phe Phe Ile Pro Gln Lys Glu Gly Cys Ile Ile Asn Ile Ile 130 135 140 Ala Asn Ile Tyr Arg Gly Phe Pro Ser Met Val His Thr Gly Ala Ala 145 150 155 160 Arg Ala Gly Val Glu Asn Leu Thr Lys Thr Leu Ala Val Glu Trp Gly 165 170 175 Asp Tyr Asn Ile Arg Val Asn Ala Ile Ala Pro Gly Thr Ile Glu Ser 180 185 190 Ser Gly Leu Asp Thr Tyr Pro Lys Pro Val Gln Asp Ile Leu Gly Glu 195 200 205 Ala Arg Ala Ala Val Pro Leu Lys Arg Phe Gly Thr Val Thr Glu Ile 210 215 220 Ala Asn Thr Thr Cys Phe Leu Ala Ser Pro Leu Ala Ser Tyr Ile Ser 225 230 235 240 Gly Val Ser Leu Tyr Val Asp Gly Ala Gln His Leu Asn Gly Gly Asp 245 250 255 Pro Met Lys Leu Thr Arg Leu Met Arg Ala Phe Thr Lys Ser Arg Glu 260 265 270 Thr 951241DNAArtificialClostridium beijerinckii 95ggtaccggat ccctaacagg aggaattaat catgatcttc aagccggaac tgatcaaagg 60tatcgctaaa acttctcacc cgtacggttg ccgtaaagaa gttctgaacc agatcgaata 120ctgcaaaaac gctaagcagt tccacggtcc gaagaaagtt ctgatcatcg gtgcttcttc 180cggtttcggt ctggcaactc gcatttctct ggcgttcggt ggtgcgaaag cagacaccat 240cggtgtttct ttcgaaaccg gtatcactga ccgccgtact ggtactgcag gctggtacaa 300caacatcttc ttcaaagagt tcgcagaaaa agaaggtctg attgctaaaa acttcatcgg 360tgacgcattc tctgacgaag ttaaagaaaa cgttatcaaa tacatcaaaa acgagttcgg 420taagatcgat ctgctgatct actctctggc ttctccgcgc cgtaaagatc cgaaaaccgg 480taacatctac gactccactc tgaaaaccac ttctggcgag ttccagggcc caaccatcga 540catggaaact gacgaactgg ttactaccaa agttaactcc gcaactgaca aagaaatcga 600agcgaccaag aaagtaatgg gtggtgaaga ttggtctgaa tggtgcaaac tgctgctgga 660aaacgactgc ctgtctgaca aagctatcac tatctcttac tcttacatcg gtgcttctcg 720cacttacaaa atctaccgtg aaggtactat cggtgaagcg aagcgtcacc tggaaaacac 780tgcgattcag atcgacaaag aatggcagaa gaagatcaac ggtaaagcat tcgtttctgt 840taacaaagca atcgttacca aggcttctgc ttacatcccg tctttctctc tgtacgctgc 900tgttctgtac aaagtaatga aagaaaaaaa tctgcacgaa aactgcatca tgcagatgca 960gcgtatgttc gctgacaaaa tctacgctga aaatctgctg gagttcgacg actccggtcg 1020tctgcgtatg gacgactggg aactgcgtga agatgtacag tctgaagtta acgaactgtg 1080ggaaaaaatc actccggata acttcaagat cctgtctgac tacgacggtt acaagaaaga 1140gttcatgcag ctgaacggct tcgaaatcga cggtgttaac tactctgaag atatcgacat 1200cgaagcgctg aagcgcctgg aaccggagct ctaataagct t 124196400PRTClostridium beijerinckii 96Met Ile Phe Lys Pro Glu Leu Ile Lys Gly Ile Ala Lys Thr Ser His 1 5 10 15 Pro Tyr Gly Cys Arg Lys Glu Val Leu Asn Gln Ile Glu Tyr Cys Lys 20 25 30 Asn Ala Lys Gln Phe His Gly Pro Lys Lys Val Leu Ile Ile Gly Ala 35 40 45 Ser Ser Gly Phe Gly Leu Ala Thr Arg Ile Ser Leu Ala Phe Gly Gly 50 55 60 Ala Lys Ala Asp Thr Ile Gly Val Ser Phe Glu Thr Gly Ile Thr Asp 65 70 75 80 Arg Arg Thr Gly Thr Ala Gly Trp Tyr Asn Asn Ile Phe Phe Lys Glu 85 90 95 Phe Ala Glu Lys Glu Gly Leu Ile Ala Lys Asn Phe Ile Gly Asp Ala 100 105 110 Phe Ser Asp Glu Val Lys Glu Asn Val Ile Lys Tyr Ile Lys Asn Glu 115 120 125 Phe Gly Lys Ile Asp Leu Leu Ile Tyr Ser Leu Ala Ser Pro Arg Arg 130 135 140 Lys Asp Pro Lys Thr Gly Asn Ile Tyr Asp Ser Thr Leu Lys Thr Thr 145 150 155 160 Ser Gly Glu Phe Gln Gly Pro Thr Ile Asp Met Glu Thr Asp Glu Leu 165 170 175 Val Thr Thr Lys Val Asn Ser Ala Thr Asp Lys Glu Ile Glu Ala Thr 180 185 190 Lys Lys Val Met Gly Gly Glu Asp Trp Ser Glu Trp Cys Lys Leu Leu 195 200 205 Leu Glu Asn Asp Cys Leu Ser Asp Lys Ala Ile Thr Ile Ser Tyr Ser 210 215 220 Tyr Ile Gly Ala Ser Arg Thr Tyr Lys Ile Tyr Arg Glu Gly Thr Ile 225 230 235 240 Gly Glu Ala Lys Arg His Leu Glu Asn Thr Ala Ile Gln Ile Asp Lys 245 250 255 Glu Trp Gln Lys Lys Ile Asn Gly Lys Ala Phe Val Ser Val Asn Lys 260 265 270 Ala Ile Val Thr Lys Ala Ser Ala Tyr Ile Pro Ser Phe Ser Leu Tyr 275 280 285 Ala Ala Val Leu Tyr Lys Val Met Lys Glu Lys Asn Leu His Glu Asn 290 295 300 Cys Ile Met Gln Met Gln Arg Met Phe Ala Asp Lys Ile Tyr Ala Glu 305 310 315 320 Asn Leu Leu Glu Phe Asp Asp Ser Gly Arg Leu Arg Met Asp Asp Trp 325 330 335 Glu Leu Arg Glu Asp Val Gln Ser Glu Val Asn Glu Leu Trp Glu Lys 340 345 350 Ile Thr Pro Asp Asn Phe Lys Ile Leu Ser Asp Tyr Asp Gly Tyr Lys 355 360 365 Lys Glu Phe Met Gln Leu Asn Gly Phe Glu Ile Asp Gly Val Asn Tyr 370 375 380 Ser Glu Asp Ile Asp Ile Glu Ala Leu Lys Arg Leu Glu Pro Glu Thr 385 390 395 400 971238DNAArtificialAeromonas hydrophila subsp. hydrophila 97ggtaccggat ccctaacagg aggaattaat catgatcatc aagccgaaag ttcgtggctt 60catctgcacc actactcacc cggttggttg cgaagctaac gttcgtcgtc agatcgctta 120caccaaagcg aaaggtacta tcgaaaacgg tccgaagaaa gttctggtta tcggtgcttc 180taccggttac ggtctggctt ctcgcattgc tgctgcattc ggttctggtg cggcaactct 240gggcgtattc ttcgaaaaag cgggttctga aaccaaaact gcaactgctg gctggtacaa 300ctccgcagca ttcgacaaag cagctaaaga agcgggtctg tacgctaaat ctatcaacgg 360tgacgcattc tctaacgaat gccgcgctaa agttatcgaa ctgatcaagc aggacctggg 420tcagatcgac ctggttgttt actctctggc ttctccggta cgtaagctgc cggataccgg 480tgaagttgtt cgttctgcac tgaaaccgat cggtgaagtt tacaccacta ctgctatcga 540caccaacaaa gaccagatca tcactgcaac cgttgagccg gctaacgaag aagaaatcca 600gaacaccatc accgtaatgg gtggtcagga ctgggaactg tggatggctg cgctgcgcga 660tgctggcgta

ctggcagacg gtgcgaagtc tgttgcttac tcttacatcg gtactgacct 720gacctggcca atctactggc acggtactct gggtcgtgcg aaagaagatt tggaccgcgc 780tgcagctgct atccgcggtg acctggcagg caaaggtggt actgcgcacg ttgctgtact 840gaaatctgtt gttactcagg cttcttctgc gattccggta atgccgctgt acatctctat 900ggcattcaag attatgaaag agaaaggtat ccacgaaggt tgcatggaac aggttgaccg 960tatgatgcgt actcgtctgt acgctgcaga catggcgctg gatgaccagg cgcgtatccg 1020tatggacgac tgggaactgc gtgaagatgt tcagcagact tgccgcgacc tgtggccgtc 1080tatcacttct gaaaacctgt gcgaactgac tgactacacc ggttacaagc aggagttcct 1140gcgtctgttc ggtttcggtc tggaagaagt tgactacgac gctgacgtta acccggacgt 1200taagttcgac gttgttgaac tagagctcta ataagctt 123898399PRTAeromonas hydrophila subsp. hydrophila 98Met Ile Ile Lys Pro Lys Val Arg Gly Phe Ile Cys Thr Thr Thr His 1 5 10 15 Pro Val Gly Cys Glu Ala Asn Val Arg Arg Gln Ile Ala Tyr Thr Lys 20 25 30 Ala Lys Gly Thr Ile Glu Asn Gly Pro Lys Lys Val Leu Val Ile Gly 35 40 45 Ala Ser Thr Gly Tyr Gly Leu Ala Ser Arg Ile Ala Ala Ala Phe Gly 50 55 60 Ser Gly Ala Ala Thr Leu Gly Val Phe Phe Glu Lys Ala Gly Ser Glu 65 70 75 80 Thr Lys Thr Ala Thr Ala Gly Trp Tyr Asn Ser Ala Ala Phe Asp Lys 85 90 95 Ala Ala Lys Glu Ala Gly Leu Tyr Ala Lys Ser Ile Asn Gly Asp Ala 100 105 110 Phe Ser Asn Glu Cys Arg Ala Lys Val Ile Glu Leu Ile Lys Gln Asp 115 120 125 Leu Gly Gln Ile Asp Leu Val Val Tyr Ser Leu Ala Ser Pro Val Arg 130 135 140 Lys Leu Pro Asp Thr Gly Glu Val Val Arg Ser Ala Leu Lys Pro Ile 145 150 155 160 Gly Glu Val Tyr Thr Thr Thr Ala Ile Asp Thr Asn Lys Asp Gln Ile 165 170 175 Ile Thr Ala Thr Val Glu Pro Ala Asn Glu Glu Glu Ile Gln Asn Thr 180 185 190 Ile Thr Val Met Gly Gly Gln Asp Trp Glu Leu Trp Met Ala Ala Leu 195 200 205 Arg Asp Ala Gly Val Leu Ala Asp Gly Ala Lys Ser Val Ala Tyr Ser 210 215 220 Tyr Ile Gly Thr Asp Leu Thr Trp Pro Ile Tyr Trp His Gly Thr Leu 225 230 235 240 Gly Arg Ala Lys Glu Asp Leu Asp Arg Ala Ala Ala Ala Ile Arg Gly 245 250 255 Asp Leu Ala Gly Lys Gly Gly Thr Ala His Val Ala Val Leu Lys Ser 260 265 270 Val Val Thr Gln Ala Ser Ser Ala Ile Pro Val Met Pro Leu Tyr Ile 275 280 285 Ser Met Ala Phe Lys Ile Met Lys Glu Lys Gly Ile His Glu Gly Cys 290 295 300 Met Glu Gln Val Asp Arg Met Met Arg Thr Arg Leu Tyr Ala Ala Asp 305 310 315 320 Met Ala Leu Asp Asp Gln Ala Arg Ile Arg Met Asp Asp Trp Glu Leu 325 330 335 Arg Glu Asp Val Gln Gln Thr Cys Arg Asp Leu Trp Pro Ser Ile Thr 340 345 350 Ser Glu Asn Leu Cys Glu Leu Thr Asp Tyr Thr Gly Tyr Lys Gln Glu 355 360 365 Phe Leu Arg Leu Phe Gly Phe Gly Leu Glu Glu Val Asp Tyr Asp Ala 370 375 380 Asp Val Asn Pro Asp Val Lys Phe Asp Val Val Glu Leu Glu Thr 385 390 395 991142DNAArtificialYarrowia lipolytica 99ggtaccggat ccctaacagg aggaattaac catggccggc ttcggtactc cgtctttcgg 60tctgcgcttc aactccgttg gtcgtgcatt cgtattctct cagactggcg aaccgaaaga 120cgttattcag gtactggaat acccaatcga aaaaccgctg gaaaaccagg ttctgctgaa 180atctctgggc ttcactatca acccggctga catcaaccag ctggaaggtg tttacccgtc 240tgtaccgccg aaatctgtac agatcaacaa cgaagatgct gctatcggtg gtaacgaagg 300tctgttccag gttctggacc cgggtgctaa atctggtctg aagaaaggcg actgggtact 360gccgcgtaaa acttgcttcg gcacctggcg ttctcacgcg ctggttgaag ctgataccgt 420tgttaagatc gacaacaccg acctgaccaa agttcaggca actaccgttt ctgttaaccc 480gtctactgct tacgaaatgc tgaaagacct gaaagaaggt gactggttca tccagaacgg 540tggtaactcc ggtgttggtc gtgctgcgat tcagatcggt cacatccgcg gtctgaaatc 600tatctccgtt gttcgtgacc gtccggatct ggaagttctg aagaaagaac tgactgacct 660gggtgcaact cacgttatca ctgaagaaga agcgtctgac aaactgttct ccaagcagat 720caaatcctgg actggcggta aaatcaagct ggcactgaac tgcatcggtg gtaaatctgc 780aacttccatc atgcgtcagc tgggtgctgg cggttctatc gttacttacg gtggtatgtc 840caagaagccg ctgactttcc cgactggtcc gttcatcttc aaagacatca ctgcgaaagg 900ttactggctg actcgctggg ctgacaagca cccggaagaa aaagcgaaaa ctatcgaaaa 960catcttcaaa ttctaccgcg agaagaaatt cgttgctccg ccagttaaca tctccactct 1020ggacttctct aaaggtaacg acgttgttct gtctgagttc ctggatgcac tgggtaaagc 1080acagaaaggt ggtggtaaga agcagctggt acagtgggtt gaatacgagc tctaataagc 1140tt 1142100367PRTYarrowia lipolytica 100Met Ala Gly Phe Gly Thr Pro Ser Phe Gly Leu Arg Phe Asn Ser Val 1 5 10 15 Gly Arg Ala Phe Val Phe Ser Gln Thr Gly Glu Pro Lys Asp Val Ile 20 25 30 Gln Val Leu Glu Tyr Pro Ile Glu Lys Pro Leu Glu Asn Gln Val Leu 35 40 45 Leu Lys Ser Leu Gly Phe Thr Ile Asn Pro Ala Asp Ile Asn Gln Leu 50 55 60 Glu Gly Val Tyr Pro Ser Val Pro Pro Lys Ser Val Gln Ile Asn Asn 65 70 75 80 Glu Asp Ala Ala Ile Gly Gly Asn Glu Gly Leu Phe Gln Val Leu Asp 85 90 95 Pro Gly Ala Lys Ser Gly Leu Lys Lys Gly Asp Trp Val Leu Pro Arg 100 105 110 Lys Thr Cys Phe Gly Thr Trp Arg Ser His Ala Leu Val Glu Ala Asp 115 120 125 Thr Val Val Lys Ile Asp Asn Thr Asp Leu Thr Lys Val Gln Ala Thr 130 135 140 Thr Val Ser Val Asn Pro Ser Thr Ala Tyr Glu Met Leu Lys Asp Leu 145 150 155 160 Lys Glu Gly Asp Trp Phe Ile Gln Asn Gly Gly Asn Ser Gly Val Gly 165 170 175 Arg Ala Ala Ile Gln Ile Gly His Ile Arg Gly Leu Lys Ser Ile Ser 180 185 190 Val Val Arg Asp Arg Pro Asp Leu Glu Val Leu Lys Lys Glu Leu Thr 195 200 205 Asp Leu Gly Ala Thr His Val Ile Thr Glu Glu Glu Ala Ser Asp Lys 210 215 220 Leu Phe Ser Lys Gln Ile Lys Ser Trp Thr Gly Gly Lys Ile Lys Leu 225 230 235 240 Ala Leu Asn Cys Ile Gly Gly Lys Ser Ala Thr Ser Ile Met Arg Gln 245 250 255 Leu Gly Ala Gly Gly Ser Ile Val Thr Tyr Gly Gly Met Ser Lys Lys 260 265 270 Pro Leu Thr Phe Pro Thr Gly Pro Phe Ile Phe Lys Asp Ile Thr Ala 275 280 285 Lys Gly Tyr Trp Leu Thr Arg Trp Ala Asp Lys His Pro Glu Glu Lys 290 295 300 Ala Lys Thr Ile Glu Asn Ile Phe Lys Phe Tyr Arg Glu Lys Lys Phe 305 310 315 320 Val Ala Pro Pro Val Asn Ile Ser Thr Leu Asp Phe Ser Lys Gly Asn 325 330 335 Asp Val Val Leu Ser Glu Phe Leu Asp Ala Leu Gly Lys Ala Gln Lys 340 345 350 Gly Gly Gly Lys Lys Gln Leu Val Gln Trp Val Glu Tyr Glu Thr 355 360 365 1011856DNAArtificialClostridium kluyveri 101ggtaccggat ccctaacagg aggaattaac catggacctg gcagaataca aaggcgtatg 60ggtattcgct gaacagcgtg acggtgaact gcagaaagtt gcgctgcagc tggttggtaa 120aggtcgtgaa ctggctgaca ctctgggtgt tgaactgact gcggtactgc tgggttctga 180agttgatgac ctggcgaaag aactggttgc ttacggcgca gacaacgtac tgtacgcaga 240ctctccgctg ctgaagcact acaccactga cggttacacc aaagttatcg acgaactgat 300caaagagcgt aagccggaaa tcctgctgat cggtgcgact ttcatcggtc gtgacctggg 360tccgcgcgtt gctggtcgcg tattcaccgg tctgactgca gactgcaccg gtctggatat 420cgacgaagcg accaagaacc tgatgatgac tcgtccggca ttcggtggta acctgatggc 480aactatcgct tgcgaaaaaa ctcgtccgca gatgtccacc gttcgtccgg gcgtattcaa 540cgcactgccg cgcgacgctt cccgtactgg taagatcgaa aaaatcgctg ctaacgttgc 600taaagacgac atccgtatcg aagttctgga agttgttaag tctgctggcg acaccatcga 660catctctgaa gcagacgtta tcgtttctgg tggtcgcggt ctgggtggtc cggacggctt 720caaagttctg aaagaactgg ctgatctgct gggtggtact atcggtggtt ctcgcgctac 780catcgacgct ggctggatcg acaagtctta ccaggttggt cagactggta aaaccgttcg 840tccgggtctg tacatcgctt gcggtatctc cggtcagatt cagcacctgg caggcatgca 900ggattccggc ttcatcgttg ctatcaacaa agacgaaaac gcaccgatga tgcaagttgc 960tgatctggcg attgttggtg acctgtacaa agttgttcca gagttcgttg aacaggttaa 1020agcgctgaac ttgtaataac tagtctaaca ggaggaatta atcatgaaga tcgttgtttg 1080cctgaaacag gttccggata ccactgaagt taagatcgac ccgaaaaccg gtactctgat 1140ccgtgaaggc gtaccgtcta tcatcaaccc ggatgacaaa aacgcgctgg aagaatccat 1200tgctctgaaa gagaaagttg gcggcaccgt aactgttgtt tctatgggtc cgccacaggc 1260tgttgatgcg ctgcgtgaag cgctggcaat gggtgctgac gaagcaatcc tggtatctga 1320ccgcgctttc gctggtgctg acactcaggc aacttcttac gcactggcag gcgcactgaa 1380aaacctggaa tacgacctga ttttcgctgg tcgtcaggct atcgacggtg acactgcaca 1440ggttggtccg cagatcgctg aaaaactggg tatcccgcag atcacttacg ttgaaaaagt 1500tgacgttgac ggtgacactc tgaccgtaca gcgtgcatgg gaagatggtt acgaagttgc 1560gaaaatcaaa actccgtgca tgctgactgc tatcaaagag ctgaaccagc cgcgctacat 1620gaacatgaag aacatcttcg aagtattcaa gaaagaagtt aaaatctggt ctgctgacga 1680cctggacgtt gacaaaaaca agctgggtct gaacggttcc tgcaccaaag ttaagcgttc 1740tcacaccaaa gaagcgaaag gtgctggcga aatcgttaac aagccgatca aagaagcggt 1800tgcttactcc atctccaagc tgcgtgaaaa acacgttatc gagctctaat aagctt 1856102334PRTClostridium kluyveri 102Met Asp Leu Ala Glu Tyr Lys Gly Val Trp Val Phe Ala Glu Gln Arg 1 5 10 15 Asp Gly Glu Leu Gln Lys Val Ala Leu Gln Leu Val Gly Lys Gly Arg 20 25 30 Glu Leu Ala Asp Thr Leu Gly Val Glu Leu Thr Ala Val Leu Leu Gly 35 40 45 Ser Glu Val Asp Asp Leu Ala Lys Glu Leu Val Ala Tyr Gly Ala Asp 50 55 60 Asn Val Leu Tyr Ala Asp Ser Pro Leu Leu Lys His Tyr Thr Thr Asp 65 70 75 80 Gly Tyr Thr Lys Val Ile Asp Glu Leu Ile Lys Glu Arg Lys Pro Glu 85 90 95 Ile Leu Leu Ile Gly Ala Thr Phe Ile Gly Arg Asp Leu Gly Pro Arg 100 105 110 Val Ala Gly Arg Val Phe Thr Gly Leu Thr Ala Asp Cys Thr Gly Leu 115 120 125 Asp Ile Asp Glu Ala Thr Lys Asn Leu Met Met Thr Arg Pro Ala Phe 130 135 140 Gly Gly Asn Leu Met Ala Thr Ile Ala Cys Glu Lys Thr Arg Pro Gln 145 150 155 160 Met Ser Thr Val Arg Pro Gly Val Phe Asn Ala Leu Pro Arg Asp Ala 165 170 175 Ser Arg Thr Gly Lys Ile Glu Lys Ile Ala Ala Asn Val Ala Lys Asp 180 185 190 Asp Ile Arg Ile Glu Val Leu Glu Val Val Lys Ser Ala Gly Asp Thr 195 200 205 Ile Asp Ile Ser Glu Ala Asp Val Ile Val Ser Gly Gly Arg Gly Leu 210 215 220 Gly Gly Pro Asp Gly Phe Lys Val Leu Lys Glu Leu Ala Asp Leu Leu 225 230 235 240 Gly Gly Thr Ile Gly Gly Ser Arg Ala Thr Ile Asp Ala Gly Trp Ile 245 250 255 Asp Lys Ser Tyr Gln Val Gly Gln Thr Gly Lys Thr Val Arg Pro Gly 260 265 270 Leu Tyr Ile Ala Cys Gly Ile Ser Gly Gln Ile Gln His Leu Ala Gly 275 280 285 Met Gln Asp Ser Gly Phe Ile Val Ala Ile Asn Lys Asp Glu Asn Ala 290 295 300 Pro Met Met Gln Val Ala Asp Leu Ala Ile Val Gly Asp Leu Tyr Lys 305 310 315 320 Val Val Pro Glu Phe Val Glu Gln Val Lys Ala Leu Asn Leu 325 330 103259PRTClostridium kluyveri 103Met Lys Ile Val Val Cys Leu Lys Gln Val Pro Asp Thr Thr Glu Val 1 5 10 15 Lys Ile Asp Pro Lys Thr Gly Thr Leu Ile Arg Glu Gly Val Pro Ser 20 25 30 Ile Ile Asn Pro Asp Asp Lys Asn Ala Leu Glu Glu Ser Ile Ala Leu 35 40 45 Lys Glu Lys Val Gly Gly Thr Val Thr Val Val Ser Met Gly Pro Pro 50 55 60 Gln Ala Val Asp Ala Leu Arg Glu Ala Leu Ala Met Gly Ala Asp Glu 65 70 75 80 Ala Ile Leu Val Ser Asp Arg Ala Phe Ala Gly Ala Asp Thr Gln Ala 85 90 95 Thr Ser Tyr Ala Leu Ala Gly Ala Leu Lys Asn Leu Glu Tyr Asp Leu 100 105 110 Ile Phe Ala Gly Arg Gln Ala Ile Asp Gly Asp Thr Ala Gln Val Gly 115 120 125 Pro Gln Ile Ala Glu Lys Leu Gly Ile Pro Gln Ile Thr Tyr Val Glu 130 135 140 Lys Val Asp Val Asp Gly Asp Thr Leu Thr Val Gln Arg Ala Trp Glu 145 150 155 160 Asp Gly Tyr Glu Val Ala Lys Ile Lys Thr Pro Cys Met Leu Thr Ala 165 170 175 Ile Lys Glu Leu Asn Gln Pro Arg Tyr Met Asn Met Lys Asn Ile Phe 180 185 190 Glu Val Phe Lys Lys Glu Val Lys Ile Trp Ser Ala Asp Asp Leu Asp 195 200 205 Val Asp Lys Asn Lys Leu Gly Leu Asn Gly Ser Cys Thr Lys Val Lys 210 215 220 Arg Ser His Thr Lys Glu Ala Lys Gly Ala Gly Glu Ile Val Asn Lys 225 230 235 240 Pro Ile Lys Glu Ala Val Ala Tyr Ser Ile Ser Lys Leu Arg Glu Lys 245 250 255 His Val Ile 1041196DNAArtificialMegasphaera elsdenii 104ggtaccggat ccctaacagg aggaattaac catggacttc aacctgactg atatccagca 60ggacttcctg aaactggcac acgacttcgg tgaaaaaaaa ctggcaccaa ccgtaactga 120acgtgaccac aaaggtatct acgacaaaga gctgatcgac gaactgctgt ctctgggtat 180cactggcgct tacttcgaag agaaatacgg tggttctggt gacgacggtg gtgacgttct 240gtcttacatc ctggctgttg aagaactggc gaaatacgac gctggcgttg ctatcactct 300gtctgcaacc gtttctctgt gcgcaaaccc gatctggcag ttcggtactg aagcgcagaa 360agagaagttc ctggttccgc tggttgaagg tactaaactg ggtgcattcg gtctgactga 420accgaacgct ggtactgacg cttctggtca gcagactatc gctaccaaaa acgacgacgg 480tacttacact ctgaacggtt ctaaaatctt catcactaac ggtggtgcag ctgacatcta 540catcgttttc gcaatgactg acaagtctaa aggtaaccac ggtatcactg cattcatcct 600ggaagatggt actccgggct tcacttacgg taagaaagaa gataaaatgg gtatccacac 660ttctcagact atggaactgg tattccagga cgttaaagtt ccggcagaaa acatgctggg 720tgaagaaggt aaaggcttca aaatcgcgat gatgactctg gacggtggtc gtatcggtgt 780tgctgctcag gcgctgggta tcgctgaagc ggcactggct gacgcggtag aatactccaa 840gcagcgtgta cagttcggta agccgctgtg caaattccag tctatctcct tcaaactggc 900tgatatgaag atgcagatcg aagcagctcg caacctggtt tacaaagcgg catgtaagaa 960gcaggaaggt aagccgttca ccgttgatgc tgctatcgct aaacgcgttg cttctgacgt 1020tgcgatgcgc gtaactactg aagctgttca gattttcggt ggttacggtt actctgaaga 1080atacccggtt gcgcgtcaca tgcgtgacgc taaaatcact cagatttacg aaggtactaa 1140cgaagttcag ctgatggtta ctggcggtgc gctgctgcgt gagctctaat aagctt 1196105385PRTMegasphaera elsdenii 105Met Asp Phe Asn Leu Thr Asp Ile Gln Gln Asp Phe Leu Lys Leu Ala 1 5 10 15 His Asp Phe Gly Glu Lys Lys Leu Ala Pro Thr Val Thr Glu Arg Asp 20 25 30 His Lys Gly Ile Tyr Asp Lys Glu Leu Ile Asp Glu Leu Leu Ser Leu 35 40 45 Gly Ile Thr Gly Ala Tyr Phe Glu Glu Lys Tyr Gly Gly Ser Gly Asp 50 55 60 Asp Gly Gly Asp Val Leu Ser Tyr Ile Leu Ala Val Glu Glu Leu Ala 65 70 75 80 Lys Tyr Asp Ala Gly Val Ala Ile Thr Leu Ser Ala Thr Val Ser Leu 85 90 95 Cys Ala Asn Pro Ile Trp Gln Phe Gly Thr Glu Ala Gln Lys Glu Lys 100 105 110 Phe Leu Val Pro Leu Val Glu Gly Thr Lys Leu Gly Ala Phe Gly Leu 115 120 125 Thr Glu Pro Asn Ala Gly Thr Asp Ala Ser Gly Gln Gln Thr Ile Ala 130 135 140 Thr Lys Asn Asp Asp Gly Thr Tyr Thr Leu Asn Gly Ser Lys Ile Phe 145 150 155

160 Ile Thr Asn Gly Gly Ala Ala Asp Ile Tyr Ile Val Phe Ala Met Thr 165 170 175 Asp Lys Ser Lys Gly Asn His Gly Ile Thr Ala Phe Ile Leu Glu Asp 180 185 190 Gly Thr Pro Gly Phe Thr Tyr Gly Lys Lys Glu Asp Lys Met Gly Ile 195 200 205 His Thr Ser Gln Thr Met Glu Leu Val Phe Gln Asp Val Lys Val Pro 210 215 220 Ala Glu Asn Met Leu Gly Glu Glu Gly Lys Gly Phe Lys Ile Ala Met 225 230 235 240 Met Thr Leu Asp Gly Gly Arg Ile Gly Val Ala Ala Gln Ala Leu Gly 245 250 255 Ile Ala Glu Ala Ala Leu Ala Asp Ala Val Glu Tyr Ser Lys Gln Arg 260 265 270 Val Gln Phe Gly Lys Pro Leu Cys Lys Phe Gln Ser Ile Ser Phe Lys 275 280 285 Leu Ala Asp Met Lys Met Gln Ile Glu Ala Ala Arg Asn Leu Val Tyr 290 295 300 Lys Ala Ala Cys Lys Lys Gln Glu Gly Lys Pro Phe Thr Val Asp Ala 305 310 315 320 Ala Ile Ala Lys Arg Val Ala Ser Asp Val Ala Met Arg Val Thr Thr 325 330 335 Glu Ala Val Gln Ile Phe Gly Gly Tyr Gly Tyr Ser Glu Glu Tyr Pro 340 345 350 Val Ala Arg His Met Arg Asp Ala Lys Ile Thr Gln Ile Tyr Glu Gly 355 360 365 Thr Asn Glu Val Gln Leu Met Val Thr Gly Gly Ala Leu Leu Arg Glu 370 375 380 Thr 385 1061421DNAArtificialAcinetobacter sp. 106ggtacctttt ttgggctaac aggaggaatt aaccatgatc aacaagatca tcaacgatat 60cgaaccgatt ctgaaatcta tcccagacgg ttctaccatc atgacttctg gcttcggtac 120taccggtcag ccggaagcgc tgctggaagc gctgatcgac ttcgcaccga aagagctgac 180tatcatcaac aacaacgctt cttccggtcc gaacggtctg actcagctgt tcactgctgg 240tctggttaag aaactgatct gctcctaccc gaaatctatc tcttccaccg ttttcccgga 300cctgtaccgc gctggtaaga tcgaactgga actggttccg cagggtaacc tggcttgccg 360tatccaggca gctggcgcgg gtctgggtgc agtattcact ccgactggtt acggtactaa 420gatcgctgaa ggtaaagaaa ctcgtatcat caacggtaaa aactacgttc tggaataccc 480gctggaagct gactacgcat tcatctacgc tgacaaagct gaccgctggg gtaacctgac 540ttaccgtaaa gcggcacgta acttcggtcc gatcatggcg aaagcagcta aaaccactat 600tgctcaggtt aaccagactg ttgaactggg cgatctggac ccggaatgca tcatcactcc 660gggtatcttc gtacagcacg ttgttcgtct gggtgacatc aaataatttt ttgggctaac 720aggaggaatt aaccatgact attcagaagc gttctcgcga agatatcgct atcatgatcg 780ctaaagacat cccggacggt tcttacgtta acctgggtat cggtctgccg actcacgttg 840ctaaatatct gccgaaagac aaagaaatct tcctgcactc tgaaaacggt gttctggcat 900tcggtccgcc gccagcagaa ggtgaagaag atcaggacct ggttaacgct ggtaaagagc 960tggtaactct gctgtctggt ggttgcttca tgcaccacgg tgactccttc gacatcatgc 1020gtggtggtca cctggatatc tgcgttatcg gtgcattcca ggttgcgctg aacggtgacc 1080tggctaactg gcacaccggt aaagacgacg acgttccggc agtaggtggt gcaatggacc 1140tggctgttgg tgcgaagcgt atcttcgttt acatggaaca caccaccaag aaaggtgaac 1200cgaaaatcgt taagcacctg acttacccga tcaccggtga acagtgcgta gaccgtatct 1260acactgacct gtgcaccatc gaactgaaag acggtcaggc ttacgttatc gaaatggttg 1320acggtctgga tttcgacact ctgcaggcgc tgactgaatg cccgctgatc gaccactgca 1380cctactcttc tctgattcag ctcagataag gatccgagct c 1421107223PRTAcinetobacter sp. 107Met Ile Asn Lys Ile Ile Asn Asp Ile Glu Pro Ile Leu Lys Ser Ile 1 5 10 15 Pro Asp Gly Ser Thr Ile Met Thr Ser Gly Phe Gly Thr Thr Gly Gln 20 25 30 Pro Glu Ala Leu Leu Glu Ala Leu Ile Asp Phe Ala Pro Lys Glu Leu 35 40 45 Thr Ile Ile Asn Asn Asn Ala Ser Ser Gly Pro Asn Gly Leu Thr Gln 50 55 60 Leu Phe Thr Ala Gly Leu Val Lys Lys Leu Ile Cys Ser Tyr Pro Lys 65 70 75 80 Ser Ile Ser Ser Thr Val Phe Pro Asp Leu Tyr Arg Ala Gly Lys Ile 85 90 95 Glu Leu Glu Leu Val Pro Gln Gly Asn Leu Ala Cys Arg Ile Gln Ala 100 105 110 Ala Gly Ala Gly Leu Gly Ala Val Phe Thr Pro Thr Gly Tyr Gly Thr 115 120 125 Lys Ile Ala Glu Gly Lys Glu Thr Arg Ile Ile Asn Gly Lys Asn Tyr 130 135 140 Val Leu Glu Tyr Pro Leu Glu Ala Asp Tyr Ala Phe Ile Tyr Ala Asp 145 150 155 160 Lys Ala Asp Arg Trp Gly Asn Leu Thr Tyr Arg Lys Ala Ala Arg Asn 165 170 175 Phe Gly Pro Ile Met Ala Lys Ala Ala Lys Thr Thr Ile Ala Gln Val 180 185 190 Asn Gln Thr Val Glu Leu Gly Asp Leu Asp Pro Glu Cys Ile Ile Thr 195 200 205 Pro Gly Ile Phe Val Gln His Val Val Arg Leu Gly Asp Ile Lys 210 215 220 1081190DNAArtificialDeinococcus radiodurans 108ggtaccggat ccctaacagg aggaattaac catggacttc aatctgccgg acgatctgcg 60tgaagttcag gcaactatcc gtgacttcat gctgactcgc gttgaagatc gcgctcagga 120aatcgaacac accaactccg taccgccgga actgatcaaa gaagcggcag acctgggtct 180gttcggtctg tctatcccgg aagaatacgg tggtgttggt ctgtcctctc tgggtcgttg 240cgcagtttac gaagcgatgg gtcagggtca catgggcttc ggtggtatga tctccgcaca 300cgcttctatc ggtacttctg gtctggttaa actgggtaac gaagagcaga agcagcgttt 360cctgccgcgt atggcggcag gcgaatgcat cgctggcttc gctatcactg aaccaagctc 420cggttctgac gctggtaaca tccgtactaa agctgttaag aaaggcgacg tttacgttct 480gaacggtact aagcactaca tctccaacgc tccgatcgct ggtctgctga ccgttatcgc 540tatcactgac ccggcacagg gttcccgtgg tatgtccgca ttcctggttg aaccgcagtc 600tactccgggc gtatctatcg gtaaaatcga cgaaaaaatg ggtcagaaag gtgcgctgtc 660tgcagaagtt atcttcgaag atgctgaaat cccggctgct aaccttctcg gtccggaaaa 720ccgcggttac cgtgaagcgc tgggtattct gactaacggt cgcgttggta tcgctgcacg 780ttctactggc gcgatgcagc gtctgctgga cctgtctgtt gcacacgctc agactcgcga 840gcagttcggt aagccgatcg ctgagttcca ggcggtacag ttcatgctgg cagaaatgga 900agttgcgatt cagacttctc gcgtactgtg gcagaaagtt gcatggatgg ttgaccaggg 960tcaggacgtt aagcgtatgg cgtctgttgc taaataccac gcaactgaaa tgctgtctca 1020ggttgctgac aaagcggtac aggttgctgg cggtatgggt tacgttaaag acgctccgtt 1080cgaacgtttc taccgcgacc agcgtctgct gcgtatctac gaaggtactt ctgaaatcca 1140gaaagttatc atcgctgctg aactgctgcg tcgcgagctc taataagctt 1190109383PRTDeinococcus radiodurans 109Met Asp Phe Asn Leu Pro Asp Asp Leu Arg Glu Val Gln Ala Thr Ile 1 5 10 15 Arg Asp Phe Met Leu Thr Arg Val Glu Asp Arg Ala Gln Glu Ile Glu 20 25 30 His Thr Asn Ser Val Pro Pro Glu Leu Ile Lys Glu Ala Ala Asp Leu 35 40 45 Gly Leu Phe Gly Leu Ser Ile Pro Glu Glu Tyr Gly Gly Val Gly Leu 50 55 60 Ser Ser Leu Gly Arg Cys Ala Val Tyr Glu Ala Met Gly Gln Gly His 65 70 75 80 Met Gly Phe Gly Gly Met Ile Ser Ala His Ala Ser Ile Gly Thr Ser 85 90 95 Gly Leu Val Lys Leu Gly Asn Glu Glu Gln Lys Gln Arg Phe Leu Pro 100 105 110 Arg Met Ala Ala Gly Glu Cys Ile Ala Gly Phe Ala Ile Thr Glu Pro 115 120 125 Ser Ser Gly Ser Asp Ala Gly Asn Ile Arg Thr Lys Ala Val Lys Lys 130 135 140 Gly Asp Val Tyr Val Leu Asn Gly Thr Lys His Tyr Ile Ser Asn Ala 145 150 155 160 Pro Ile Ala Gly Leu Leu Thr Val Ile Ala Ile Thr Asp Pro Ala Gln 165 170 175 Gly Ser Arg Gly Met Ser Ala Phe Leu Val Glu Pro Gln Ser Thr Pro 180 185 190 Gly Val Ser Ile Gly Lys Ile Asp Glu Lys Met Gly Gln Lys Gly Ala 195 200 205 Leu Ser Ala Glu Val Ile Phe Glu Asp Ala Glu Ile Pro Ala Ala Asn 210 215 220 Leu Leu Gly Pro Glu Asn Arg Gly Tyr Arg Glu Ala Leu Gly Ile Leu 225 230 235 240 Thr Asn Gly Arg Val Gly Ile Ala Ala Arg Ser Thr Gly Ala Met Gln 245 250 255 Arg Leu Leu Asp Leu Ser Val Ala His Ala Gln Thr Arg Glu Gln Phe 260 265 270 Gly Lys Pro Ile Ala Glu Phe Gln Ala Val Gln Phe Met Leu Ala Glu 275 280 285 Met Glu Val Ala Ile Gln Thr Ser Arg Val Leu Trp Gln Lys Val Ala 290 295 300 Trp Met Val Asp Gln Gly Gln Asp Val Lys Arg Met Ala Ser Val Ala 305 310 315 320 Lys Tyr His Ala Thr Glu Met Leu Ser Gln Val Ala Asp Lys Ala Val 325 330 335 Gln Val Ala Gly Gly Met Gly Tyr Val Lys Asp Ala Pro Phe Glu Arg 340 345 350 Phe Tyr Arg Asp Gln Arg Leu Leu Arg Ile Tyr Glu Gly Thr Ser Glu 355 360 365 Ile Gln Lys Val Ile Ile Ala Ala Glu Leu Leu Arg Arg Glu Thr 370 375 380 1101202DNAArtificialArabidopsis thaliana 110ggtaccggat ccctaacagg aggaattaac catggcctct tctctgctgt tcgacgacac 60tcagctgcag ttcaaagaat ccgtttccaa gttcgctcag gacaacatcg ctccgcacgc 120tgaacgtatc gacaaaacta actccttccc gaaagacgtt aacctgtgga aactgatggg 180cgagttcaat ctgcacggta tcactgcgcc agaagaatac ggtggtctgg gtctgggtta 240cctgtaccac tgcatcgcga tggaagaaat ctctcgcgct tctggttctg ttgctctgtc 300ttacggcgca cactctaacc tgtgcatcaa ccagctggta cgtaacggta ctgctgcaca 360gaaagagaag tatctgccga aactgatctc cggtgaacac gttggtgcac tggcgatgtc 420tgaaccgaac gctggttctg acgttgttgg tatgaagtgc aaagcagaaa aagttgacgg 480tggttacatt ctgaacggta acaagatgtg gtgcaccaac ggtccgtctg ctgaaactct 540ggttgtttac gctaaaactg acaccaaagc gggttctaaa ggtatcactg cattcatcat 600cgaaaaaggt atgaccggtt tctccactgc tcagaagctg gacaagctgg gtatgcgcgg 660ttctgacact tgcgaactgg tattcgaaaa ctgcttcgta ccggaagaaa acatcctgga 720taaagaaggt aaaggcgttt acgttctgat gtccggtctg gatctggaac gtctggtact 780ggcagctggt ccgctgggta tcatgcaggc ttgcctggat aacgtactgc cgtacatccg 840tcagcgtgaa cagttcggtc gtccggttgg cgagttccag ttcatccagg gtaaagttgc 900tgacatgtac actgcgctgc agtcctcccg ttcttacgtt tactccgttg ctcgcgactg 960cgacaacggt aaagttgatc cgaaagactg cgcaggcact atcctgtgcg cagctgaacg 1020tgcaactcag gttgcgctgc aggcgattca gtgcctgggt ggtaacggtt acatcaacga 1080atacgcaact ggtcgtctgc tgcgcgacgc gaagctgtac gaaatcggtg ctggtacttc 1140tgaaatccgc cgtatcgtta tcggtcgtga actgttcaaa gaagaagagc tctaataagc 1200tt 1202111387PRTArabidopsis thaliana 111Met Ala Ser Ser Leu Leu Phe Asp Asp Thr Gln Leu Gln Phe Lys Glu 1 5 10 15 Ser Val Ser Lys Phe Ala Gln Asp Asn Ile Ala Pro His Ala Glu Arg 20 25 30 Ile Asp Lys Thr Asn Ser Phe Pro Lys Asp Val Asn Leu Trp Lys Leu 35 40 45 Met Gly Glu Phe Asn Leu His Gly Ile Thr Ala Pro Glu Glu Tyr Gly 50 55 60 Gly Leu Gly Leu Gly Tyr Leu Tyr His Cys Ile Ala Met Glu Glu Ile 65 70 75 80 Ser Arg Ala Ser Gly Ser Val Ala Leu Ser Tyr Gly Ala His Ser Asn 85 90 95 Leu Cys Ile Asn Gln Leu Val Arg Asn Gly Thr Ala Ala Gln Lys Glu 100 105 110 Lys Tyr Leu Pro Lys Leu Ile Ser Gly Glu His Val Gly Ala Leu Ala 115 120 125 Met Ser Glu Pro Asn Ala Gly Ser Asp Val Val Gly Met Lys Cys Lys 130 135 140 Ala Glu Lys Val Asp Gly Gly Tyr Ile Leu Asn Gly Asn Lys Met Trp 145 150 155 160 Cys Thr Asn Gly Pro Ser Ala Glu Thr Leu Val Val Tyr Ala Lys Thr 165 170 175 Asp Thr Lys Ala Gly Ser Lys Gly Ile Thr Ala Phe Ile Ile Glu Lys 180 185 190 Gly Met Thr Gly Phe Ser Thr Ala Gln Lys Leu Asp Lys Leu Gly Met 195 200 205 Arg Gly Ser Asp Thr Cys Glu Leu Val Phe Glu Asn Cys Phe Val Pro 210 215 220 Glu Glu Asn Ile Leu Asp Lys Glu Gly Lys Gly Val Tyr Val Leu Met 225 230 235 240 Ser Gly Leu Asp Leu Glu Arg Leu Val Leu Ala Ala Gly Pro Leu Gly 245 250 255 Ile Met Gln Ala Cys Leu Asp Asn Val Leu Pro Tyr Ile Arg Gln Arg 260 265 270 Glu Gln Phe Gly Arg Pro Val Gly Glu Phe Gln Phe Ile Gln Gly Lys 275 280 285 Val Ala Asp Met Tyr Thr Ala Leu Gln Ser Ser Arg Ser Tyr Val Tyr 290 295 300 Ser Val Ala Arg Asp Cys Asp Asn Gly Lys Val Asp Pro Lys Asp Cys 305 310 315 320 Ala Gly Thr Ile Leu Cys Ala Ala Glu Arg Ala Thr Gln Val Ala Leu 325 330 335 Gln Ala Ile Gln Cys Leu Gly Gly Asn Gly Tyr Ile Asn Glu Tyr Ala 340 345 350 Thr Gly Arg Leu Leu Arg Asp Ala Lys Leu Tyr Glu Ile Gly Ala Gly 355 360 365 Thr Ser Glu Ile Arg Arg Ile Val Ile Gly Arg Glu Leu Phe Lys Glu 370 375 380 Glu Glu Thr 385 1121232DNAArtificialHomo sapiens 112ggtaccggat ccctaacagg aggaattaac catgggtccg gaatttgact ggcaggaccc 60gctggtactg gaagagcagc tgaccactga cgaaatcctg atccgtgaca ccttccgtac 120ttactgccag gaacgtctga tgccgcgcat tctgctggct aaccgtaacg aagttttcca 180ccgtgaaatc atctctgaaa tgggtgaact gggtgttctg ggtccgacta tcaaaggtta 240cggttgcgca ggcgtttctt ccgttgctta cggtctgctg gcgcgtgaac tggaacgcgt 300tgactccggt taccgttctg caatgtccgt tcagtcctct ctggtaatgc acccaatcta 360cgcttacggt tctgaagagc agcgtcagaa atatctgccg cagctggcga aaggtgaact 420gctgggttgc ttcggtctga ctgaaccgaa ctccggttct gacccgtcct ctatggaaac 480tcgcgcacac tacaactctt ctaacaagtc ttacactctg aacggcacca aaacctggat 540cactaactct ccgatggctg acctgttcgt tgtatgggct cgctgcgaag atggttgcat 600ccgcggtttc ctgctggaaa aaggtatgcg tggtctgtct gcaccgcgta tccagggtaa 660gttctctctg cgcgcttctg caactggtat gatcatcatg gacggtgttg aagttccgga 720agaaaacgtt ctgccgggtg catcttctct gggtggtccg ttcggttgcc tgaacaacgc 780gcgttacggt atcgcatggg gcgtactggg tgcttctgag ttctgcctgc acactgcacg 840tcagtacgca ctggatcgca tgcagttcgg tgttccgctg gcgcgtaacc agctgattca 900gaagaaactg gctgacatgc tgactgaaat cactctgggt ctgcacgctt gcctgcagct 960gggtcgtctg aaagaccagg acaaagctgc accggaaatg gtttctctgc tgaagcgtaa 1020caactgcggt aaagcgctgg atatcgctcg ccaggctcgc gacatgctgg gtggtaacgg 1080tatctctgac gaataccacg ttatccgtca cgcgatgaac ctggaagctg ttaacaccta 1140cgaaggtact cacgacatcc acgcgctgat cctgggtcgt gctatcaccg gtatccaggc 1200tttcactgct tctaaagagc tctaataagc tt 1232113397PRTHomo sapiens 113Met Gly Pro Glu Phe Asp Trp Gln Asp Pro Leu Val Leu Glu Glu Gln 1 5 10 15 Leu Thr Thr Asp Glu Ile Leu Ile Arg Asp Thr Phe Arg Thr Tyr Cys 20 25 30 Gln Glu Arg Leu Met Pro Arg Ile Leu Leu Ala Asn Arg Asn Glu Val 35 40 45 Phe His Arg Glu Ile Ile Ser Glu Met Gly Glu Leu Gly Val Leu Gly 50 55 60 Pro Thr Ile Lys Gly Tyr Gly Cys Ala Gly Val Ser Ser Val Ala Tyr 65 70 75 80 Gly Leu Leu Ala Arg Glu Leu Glu Arg Val Asp Ser Gly Tyr Arg Ser 85 90 95 Ala Met Ser Val Gln Ser Ser Leu Val Met His Pro Ile Tyr Ala Tyr 100 105 110 Gly Ser Glu Glu Gln Arg Gln Lys Tyr Leu Pro Gln Leu Ala Lys Gly 115 120 125 Glu Leu Leu Gly Cys Phe Gly Leu Thr Glu Pro Asn Ser Gly Ser Asp 130 135 140 Pro Ser Ser Met Glu Thr Arg Ala His Tyr Asn Ser Ser Asn Lys Ser 145 150 155 160 Tyr Thr Leu Asn Gly Thr Lys Thr Trp Ile Thr Asn Ser Pro Met Ala 165 170 175 Asp Leu Phe Val Val Trp Ala Arg Cys Glu Asp Gly Cys Ile Arg Gly 180 185 190 Phe Leu Leu Glu Lys Gly Met Arg Gly Leu Ser Ala Pro Arg Ile Gln 195 200 205 Gly Lys Phe Ser Leu Arg Ala Ser Ala Thr Gly Met Ile Ile Met Asp 210 215 220 Gly Val Glu Val Pro Glu Glu Asn Val Leu Pro Gly Ala Ser Ser Leu 225 230 235 240 Gly Gly Pro Phe Gly Cys Leu Asn Asn Ala Arg Tyr Gly Ile Ala Trp 245 250

255 Gly Val Leu Gly Ala Ser Glu Phe Cys Leu His Thr Ala Arg Gln Tyr 260 265 270 Ala Leu Asp Arg Met Gln Phe Gly Val Pro Leu Ala Arg Asn Gln Leu 275 280 285 Ile Gln Lys Lys Leu Ala Asp Met Leu Thr Glu Ile Thr Leu Gly Leu 290 295 300 His Ala Cys Leu Gln Leu Gly Arg Leu Lys Asp Gln Asp Lys Ala Ala 305 310 315 320 Pro Glu Met Val Ser Leu Leu Lys Arg Asn Asn Cys Gly Lys Ala Leu 325 330 335 Asp Ile Ala Arg Gln Ala Arg Asp Met Leu Gly Gly Asn Gly Ile Ser 340 345 350 Asp Glu Tyr His Val Ile Arg His Ala Met Asn Leu Glu Ala Val Asn 355 360 365 Thr Tyr Glu Gly Thr His Asp Ile His Ala Leu Ile Leu Gly Arg Ala 370 375 380 Ile Thr Gly Ile Gln Ala Phe Thr Ala Ser Lys Glu Thr 385 390 395 1141784DNAArtificialHomo sapiens 114ggtaccggat ccctaacagg aggaattaat catgaccact ctggttatcg ctgaacacgc 60taacgactct ctggcaccaa tcactctgaa caccatcact gcggcaactc gtctgggtgg 120tgaagtttcc tgcctggttg ctggcaccaa gtgcgacaaa gttgctcagg acctgtgcaa 180agtagcgggt atcgcgaaag ttctggtagc gcagcacgac gtttacaaag gtctgctgcc 240ggaagagctg actccgctga tcctggcaac tcagaagcag ttcaactaca ctcacatctg 300tgcgggtgct tctgcattcg gtaaaaatct gctgccgcgc gttgctgcga aactggaagt 360tgcaccgatt tctgacatca tcgctatcaa gtctccggat accttcgtac gtactatcta 420cgctggtaac gcactgtgca ccgttaagtg cgacgaaaaa gttaaagtat tctctgtacg 480tggtacttct ttcgacgctg cagcaacttc tggtggttct gcatcttctg aaaaagcatc 540ttccacttct ccggttgaaa tctctgagtg gctggatcag aaactgacca agtctgaccg 600tccggaactg actggcgcga aagttgttgt ttctggtggt cgtggtctga aatctggtga 660aaacttcaaa ctgctgtacg acctggctga ccagctgcac gctgctgttg gtgcttctcg 720cgctgctgtt gatgctggct tcgtaccgaa cgacatgcaa gttggtcaga ctggtaaaat 780cgttgcaccg gaactgtaca tcgctgttgg tatctccggt gcgattcagc acctggcggg 840tatgaaagac tccaaaacta tcgttgctat caacaaagac ccggaagcac cgatcttcca 900ggttgctgac tacggtatcg ttgctgacct gttcaaagtt gttccggaaa tgactgaaat 960cctgaagaag aagtaataac tagtctaaca ggaggaatta accatggctg aactgcgcgt 1020actggttgct gttaagcgcg ttatcgacta cgcagttaaa atccgcgtta agccggaccg 1080tactggcgtt gttactgacg gtgttaaaca ctctatgaac ccgttctgcg aaatcgctgt 1140tgaagaagcg gtacgtctga aagagaagaa actggttaaa gaagttatcg ctgtttcctg 1200cggtccggca cagtgccagg aaaccattcg tactgcactg gcgatgggcg cagaccgcgg 1260tatccacgtt gaagttccgc cagctgaagc agaacgtctg ggtccgctcc aggttgctcg 1320cgtactggcg aaactggctg aaaaagaaaa agttgacctg gtactgctgg gtaagcaggc 1380tatcgacgac gactgcaacc agactggtca gatgactgct ggcttcctgg actggccgca 1440gggtactttc gcttctcagg taactctgga aggtgacaaa ctgaaagttg aacgtgaaat 1500cgacggtggt ctggaaactc tgcgtctgaa actgccggca gttgttactg ctgatctgcg 1560tctgaacgaa ccgcgttacg caactctgcc gaacattatg aaagcgaaga agaagaaaat 1620cgaagttatc aagccgggcg acctgggtgt tgacctgact tctaaactgt ctgttatctc 1680cgttgaagat ccgccgcagc gtactgctgg cgttaaagtt gaaaccactg aggatctggt 1740agcgaaactg aaagaaatcg gtcgtatcga gctctaataa gctt 1784115314PRTHomo sapiens 115Met Thr Thr Leu Val Ile Ala Glu His Ala Asn Asp Ser Leu Ala Pro 1 5 10 15 Ile Thr Leu Asn Thr Ile Thr Ala Ala Thr Arg Leu Gly Gly Glu Val 20 25 30 Ser Cys Leu Val Ala Gly Thr Lys Cys Asp Lys Val Ala Gln Asp Leu 35 40 45 Cys Lys Val Ala Gly Ile Ala Lys Val Leu Val Ala Gln His Asp Val 50 55 60 Tyr Lys Gly Leu Leu Pro Glu Glu Leu Thr Pro Leu Ile Leu Ala Thr 65 70 75 80 Gln Lys Gln Phe Asn Tyr Thr His Ile Cys Ala Gly Ala Ser Ala Phe 85 90 95 Gly Lys Asn Leu Leu Pro Arg Val Ala Ala Lys Leu Glu Val Ala Pro 100 105 110 Ile Ser Asp Ile Ile Ala Ile Lys Ser Pro Asp Thr Phe Val Arg Thr 115 120 125 Ile Tyr Ala Gly Asn Ala Leu Cys Thr Val Lys Cys Asp Glu Lys Val 130 135 140 Lys Val Phe Ser Val Arg Gly Thr Ser Phe Asp Ala Ala Ala Thr Ser 145 150 155 160 Gly Gly Ser Ala Ser Ser Glu Lys Ala Ser Ser Thr Ser Pro Val Glu 165 170 175 Ile Ser Glu Trp Leu Asp Gln Lys Leu Thr Lys Ser Asp Arg Pro Glu 180 185 190 Leu Thr Gly Ala Lys Val Val Val Ser Gly Gly Arg Gly Leu Lys Ser 195 200 205 Gly Glu Asn Phe Lys Leu Leu Tyr Asp Leu Ala Asp Gln Leu His Ala 210 215 220 Ala Val Gly Ala Ser Arg Ala Ala Val Asp Ala Gly Phe Val Pro Asn 225 230 235 240 Asp Met Gln Val Gly Gln Thr Gly Lys Ile Val Ala Pro Glu Leu Tyr 245 250 255 Ile Ala Val Gly Ile Ser Gly Ala Ile Gln His Leu Ala Gly Met Lys 260 265 270 Asp Ser Lys Thr Ile Val Ala Ile Asn Lys Asp Pro Glu Ala Pro Ile 275 280 285 Phe Gln Val Ala Asp Tyr Gly Ile Val Ala Asp Leu Phe Lys Val Val 290 295 300 Pro Glu Met Thr Glu Ile Leu Lys Lys Lys 305 310 116255PRTHomo sapiens 116Met Ala Glu Leu Arg Val Leu Val Ala Val Lys Arg Val Ile Asp Tyr 1 5 10 15 Ala Val Lys Ile Arg Val Lys Pro Asp Arg Thr Gly Val Val Thr Asp 20 25 30 Gly Val Lys His Ser Met Asn Pro Phe Cys Glu Ile Ala Val Glu Glu 35 40 45 Ala Val Arg Leu Lys Glu Lys Lys Leu Val Lys Glu Val Ile Ala Val 50 55 60 Ser Cys Gly Pro Ala Gln Cys Gln Glu Thr Ile Arg Thr Ala Leu Ala 65 70 75 80 Met Gly Ala Asp Arg Gly Ile His Val Glu Val Pro Pro Ala Glu Ala 85 90 95 Glu Arg Leu Gly Pro Leu Gln Val Ala Arg Val Leu Ala Lys Leu Ala 100 105 110 Glu Lys Glu Lys Val Asp Leu Val Leu Leu Gly Lys Gln Ala Ile Asp 115 120 125 Asp Asp Cys Asn Gln Thr Gly Gln Met Thr Ala Gly Phe Leu Asp Trp 130 135 140 Pro Gln Gly Thr Phe Ala Ser Gln Val Thr Leu Glu Gly Asp Lys Leu 145 150 155 160 Lys Val Glu Arg Glu Ile Asp Gly Gly Leu Glu Thr Leu Arg Leu Lys 165 170 175 Leu Pro Ala Val Val Thr Ala Asp Leu Arg Leu Asn Glu Pro Arg Tyr 180 185 190 Ala Thr Leu Pro Asn Ile Met Lys Ala Lys Lys Lys Lys Ile Glu Val 195 200 205 Ile Lys Pro Gly Asp Leu Gly Val Asp Leu Thr Ser Lys Leu Ser Val 210 215 220 Ile Ser Val Glu Asp Pro Pro Gln Arg Thr Ala Gly Val Lys Val Glu 225 230 235 240 Thr Thr Glu Asp Leu Val Ala Lys Leu Lys Glu Ile Gly Arg Ile 245 250 255 117316PRTHomo sapiens 117Met Ser Ser Pro Gln Ala Pro Glu Asp Gly Gln Gly Cys Gly Asp Arg 1 5 10 15 Gly Asp Pro Pro Gly Asp Leu Arg Ser Val Leu Val Thr Thr Val Leu 20 25 30 Asn Leu Glu Pro Leu Asp Glu Asp Leu Phe Arg Gly Arg His Tyr Trp 35 40 45 Val Pro Ala Lys Arg Leu Phe Gly Gly Gln Ile Val Gly Gln Ala Leu 50 55 60 Val Ala Ala Ala Lys Ser Val Ser Glu Asp Val His Val His Ser Leu 65 70 75 80 His Cys Tyr Phe Val Arg Ala Gly Asp Pro Lys Leu Pro Val Leu Tyr 85 90 95 Gln Val Glu Arg Thr Arg Thr Gly Ser Ser Phe Ser Val Arg Ser Val 100 105 110 Lys Ala Val Gln His Gly Lys Pro Ile Phe Ile Cys Gln Ala Ser Phe 115 120 125 Gln Gln Ala Gln Pro Ser Pro Met Gln His Gln Phe Ser Met Pro Thr 130 135 140 Val Pro Pro Pro Glu Glu Leu Leu Asp Cys Glu Thr Leu Ile Asp Gln 145 150 155 160 Tyr Leu Arg Asp Pro Asn Leu Gln Lys Arg Tyr Pro Leu Ala Leu Asn 165 170 175 Arg Ile Ala Ala Gln Glu Val Pro Ile Glu Ile Lys Pro Val Asn Pro 180 185 190 Ser Pro Leu Ser Gln Leu Gln Arg Met Glu Pro Lys Gln Met Phe Trp 195 200 205 Val Arg Ala Arg Gly Tyr Ile Gly Glu Gly Asp Met Lys Met His Cys 210 215 220 Cys Val Ala Ala Tyr Ile Ser Asp Tyr Ala Phe Leu Gly Thr Ala Leu 225 230 235 240 Leu Pro His Gln Trp Gln His Lys Val His Phe Met Val Ser Leu Asp 245 250 255 His Ser Met Trp Phe His Ala Pro Phe Arg Ala Asp His Trp Met Leu 260 265 270 Tyr Glu Cys Glu Ser Pro Trp Ala Gly Gly Ser Arg Gly Leu Val His 275 280 285 Gly Arg Leu Trp Arg Gln Asp Gly Val Leu Ala Val Thr Cys Ala Gln 290 295 300 Glu Gly Val Ile Arg Val Lys Pro Gln Val Ser Glu 305 310 315 118931DNAArtificialHyphomonas neptunium 118ggtacctttt ttgggctaac aggaggaatt aaccatggcg aaagacccgg ttggcgatct 60gctgactctg ctggatctgg aacgtctgga actggatctg ttccgcggtc agtctccgga 120cgaagaagaa tctcagcgcg tattcggtgg tcaggttatc gctcagtctc tggttgctgc 180ttaccgtact gtaccggacg accgtctgtg ccactctctg cactgctact tcatccgtcc 240gggcgacccg tctgtaccaa tcatctacca ggttgaccac tctcgcgacg gtggttcttt 300caccactcgt cgcgttgttg ctatccagca cggtaagcag attttcaacc tggcagcttc 360tttccacgtt gttgaagatt cctggcacca ccagcacgaa atgccggaag ttgacccgcc 420agaatccgta ggtgaccgta tcgagtggcg tcgtaaattc gctgaacagg ttccggaacg 480tcaccgcggt cacttcctgc gcgaccgtcc ggttgaaatg cgtgaaatcg acccgctgga 540cccgctgaaa ccggcaaaag cgtctgacca gcagaacctg tggttccgcg ttgctcgtcc 600gatcgacgaa gcgccgtggc tgcaccactg cctgatggct tacgcttctg acatggcgct 660gctgggtact ggtaaccgtc cgcacggtat ctcctggatg accggtgaac tgatgtccgc 720atctctggat cacgcgatgt ggttccacgc accgactaaa ttcgacgagt ggcacctgta 780ctctatggac tctccgtacg caggcggtgc acgttctttc aaccgcggtt ctatctacga 840ctccaccggt cgtctggttg cttctgttgc tcaggaaggt ctgatgcgtc gcgttgaacg 900taagccgcgt aaaagctaag gatccgagct c 931119294PRTHyphomonas neptunium 119Met Ala Lys Asp Pro Val Gly Asp Leu Leu Thr Leu Leu Asp Leu Glu 1 5 10 15 Arg Leu Glu Leu Asp Leu Phe Arg Gly Gln Ser Pro Asp Glu Glu Glu 20 25 30 Ser Gln Arg Val Phe Gly Gly Gln Val Ile Ala Gln Ser Leu Val Ala 35 40 45 Ala Tyr Arg Thr Val Pro Asp Asp Arg Leu Cys His Ser Leu His Cys 50 55 60 Tyr Phe Ile Arg Pro Gly Asp Pro Ser Val Pro Ile Ile Tyr Gln Val 65 70 75 80 Asp His Ser Arg Asp Gly Gly Ser Phe Thr Thr Arg Arg Val Val Ala 85 90 95 Ile Gln His Gly Lys Gln Ile Phe Asn Leu Ala Ala Ser Phe His Val 100 105 110 Val Glu Asp Ser Trp His His Gln His Glu Met Pro Glu Val Asp Pro 115 120 125 Pro Glu Ser Val Gly Asp Arg Ile Glu Trp Arg Arg Lys Phe Ala Glu 130 135 140 Gln Val Pro Glu Arg His Arg Gly His Phe Leu Arg Asp Arg Pro Val 145 150 155 160 Glu Met Arg Glu Ile Asp Pro Leu Asp Pro Leu Lys Pro Ala Lys Ala 165 170 175 Ser Asp Gln Gln Asn Leu Trp Phe Arg Val Ala Arg Pro Ile Asp Glu 180 185 190 Ala Pro Trp Leu His His Cys Leu Met Ala Tyr Ala Ser Asp Met Ala 195 200 205 Leu Leu Gly Thr Gly Asn Arg Pro His Gly Ile Ser Trp Met Thr Gly 210 215 220 Glu Leu Met Ser Ala Ser Leu Asp His Ala Met Trp Phe His Ala Pro 225 230 235 240 Thr Lys Phe Asp Glu Trp His Leu Tyr Ser Met Asp Ser Pro Tyr Ala 245 250 255 Gly Gly Ala Arg Ser Phe Asn Arg Gly Ser Ile Tyr Asp Ser Thr Gly 260 265 270 Arg Leu Val Ala Ser Val Ala Gln Glu Gly Leu Met Arg Arg Val Glu 275 280 285 Arg Lys Pro Arg Lys Ser 290 1201421DNAArtificialAcinetobacter sp. 120ggtacctttt ttgggctaac aggaggaatt aaccatgatc aacaagatca tcaacgatat 60cgaaccgatt ctgaaatcta tcccagacgg ttctaccatc atgacttctg gcttcggtac 120taccggtcag ccggaagcgc tgctggaagc gctgatcgac ttcgcaccga aagagctgac 180tatcatcaac aacaacgctt cttccggtcc gaacggtctg actcagctgt tcactgctgg 240tctggttaag aaactgatct gctcctaccc gaaatctatc tcttccaccg ttttcccgga 300cctgtaccgc gctggtaaga tcgaactgga actggttccg cagggtaacc tggcttgccg 360tatccaggca gctggcgcgg gtctgggtgc agtattcact ccgactggtt acggtactaa 420gatcgctgaa ggtaaagaaa ctcgtatcat caacggtaaa aactacgttc tggaataccc 480gctggaagct gactacgcat tcatctacgc tgacaaagct gaccgctggg gtaacctgac 540ttaccgtaaa gcggcacgta acttcggtcc gatcatggcg aaagcagcta aaaccactat 600tgctcaggtt aaccagactg ttgaactggg cgatctggac ccggaatgca tcatcactcc 660gggtatcttc gtacagcacg ttgttcgtct gggtgacatc aaataatttt ttgggctaac 720aggaggaatt aaccatgact attcagaagc gttctcgcga agatatcgct atcatgatcg 780ctaaagacat cccggacggt tcttacgtta acctgggtat cggtctgccg actcacgttg 840ctaaatatct gccgaaagac aaagaaatct tcctgcactc tgaaaacggt gttctggcat 900tcggtccgcc gccagcagaa ggtgaagaag atcaggacct ggttaacgct ggtaaagagc 960tggtaactct gctgtctggt ggttgcttca tgcaccacgg tgactccttc gacatcatgc 1020gtggtggtca cctggatatc tgcgttatcg gtgcattcca ggttgcgctg aacggtgacc 1080tggctaactg gcacaccggt aaagacgacg acgttccggc agtaggtggt gcaatggacc 1140tggctgttgg tgcgaagcgt atcttcgttt acatggaaca caccaccaag aaaggtgaac 1200cgaaaatcgt taagcacctg acttacccga tcaccggtga acagtgcgta gaccgtatct 1260acactgacct gtgcaccatc gaactgaaag acggtcaggc ttacgttatc gaaatggttg 1320acggtctgga tttcgacact ctgcaggcgc tgactgaatg cccgctgatc gaccactgca 1380cctactcttc tctgattcag ctcagataag gatccgagct c 1421121223PRTAcinetobacter sp. 121Met Ile Asn Lys Ile Ile Asn Asp Ile Glu Pro Ile Leu Lys Ser Ile 1 5 10 15 Pro Asp Gly Ser Thr Ile Met Thr Ser Gly Phe Gly Thr Thr Gly Gln 20 25 30 Pro Glu Ala Leu Leu Glu Ala Leu Ile Asp Phe Ala Pro Lys Glu Leu 35 40 45 Thr Ile Ile Asn Asn Asn Ala Ser Ser Gly Pro Asn Gly Leu Thr Gln 50 55 60 Leu Phe Thr Ala Gly Leu Val Lys Lys Leu Ile Cys Ser Tyr Pro Lys 65 70 75 80 Ser Ile Ser Ser Thr Val Phe Pro Asp Leu Tyr Arg Ala Gly Lys Ile 85 90 95 Glu Leu Glu Leu Val Pro Gln Gly Asn Leu Ala Cys Arg Ile Gln Ala 100 105 110 Ala Gly Ala Gly Leu Gly Ala Val Phe Thr Pro Thr Gly Tyr Gly Thr 115 120 125 Lys Ile Ala Glu Gly Lys Glu Thr Arg Ile Ile Asn Gly Lys Asn Tyr 130 135 140 Val Leu Glu Tyr Pro Leu Glu Ala Asp Tyr Ala Phe Ile Tyr Ala Asp 145 150 155 160 Lys Ala Asp Arg Trp Gly Asn Leu Thr Tyr Arg Lys Ala Ala Arg Asn 165 170 175 Phe Gly Pro Ile Met Ala Lys Ala Ala Lys Thr Thr Ile Ala Gln Val 180 185 190 Asn Gln Thr Val Glu Leu Gly Asp Leu Asp Pro Glu Cys Ile Ile Thr 195 200 205 Pro Gly Ile Phe Val Gln His Val Val Arg Leu Gly Asp Ile Lys 210 215 220 122224PRTAcinetobacter sp. 122Met Thr Ile Gln Lys Arg Ser Arg Glu Asp Ile Ala Ile Met Ile Ala 1 5 10 15 Lys Asp Ile Pro Asp Gly Ser Tyr Val Asn Leu Gly Ile Gly Leu Pro 20 25 30 Thr His Val Ala Lys Tyr Leu Pro Lys Asp Lys Glu Ile Phe Leu His 35 40 45 Ser Glu Asn Gly Val Leu Ala Phe Gly Pro Pro Pro Ala Glu Gly Glu 50 55 60 Glu Asp Gln Asp Leu Val Asn Ala Gly Lys Glu Leu Val Thr Leu Leu 65 70

75 80 Ser Gly Gly Cys Phe Met His His Gly Asp Ser Phe Asp Ile Met Arg 85 90 95 Gly Gly His Leu Asp Ile Cys Val Ile Gly Ala Phe Gln Val Ala Leu 100 105 110 Asn Gly Asp Leu Ala Asn Trp His Thr Gly Lys Asp Asp Asp Val Pro 115 120 125 Ala Val Gly Gly Ala Met Asp Leu Ala Val Gly Ala Lys Arg Ile Phe 130 135 140 Val Tyr Met Glu His Thr Thr Lys Lys Gly Glu Pro Lys Ile Val Lys 145 150 155 160 His Leu Thr Tyr Pro Ile Thr Gly Glu Gln Cys Val Asp Arg Ile Tyr 165 170 175 Thr Asp Leu Cys Thr Ile Glu Leu Lys Asp Gly Gln Ala Tyr Val Ile 180 185 190 Glu Met Val Asp Gly Leu Asp Phe Asp Thr Leu Gln Ala Leu Thr Glu 195 200 205 Cys Pro Leu Ile Asp His Cys Thr Tyr Ser Ser Leu Ile Gln Leu Arg 210 215 220 123437PRTClostridium kluyveri 123Met Val Phe Lys Asn Trp Gln Asp Leu Tyr Lys Ser Lys Ile Val Ser 1 5 10 15 Ala Asp Glu Ala Val Ser Lys Val Ser Cys Gly Asp Ser Ile Ile Leu 20 25 30 Gly Asn Ala Cys Gly Ala Ser Leu Thr Leu Leu Asp Ala Leu Ala Ala 35 40 45 Asn Lys Glu Lys Tyr Lys Ser Val Lys Ile His Asn Leu Ile Leu Asn 50 55 60 Tyr Lys Asn Asp Ile Tyr Thr Asp Pro Glu Ser Glu Lys Tyr Ile His 65 70 75 80 Gly Asn Thr Phe Phe Val Ser Gly Gly Thr Lys Glu Ala Val Asn Cys 85 90 95 Asn Arg Thr Asp Tyr Thr Pro Cys Phe Phe Tyr Glu Ile Pro Lys Leu 100 105 110 Leu Lys Gln Lys Tyr Ile Asn Ala Asp Val Ala Phe Ile Gln Val Ser 115 120 125 Lys Pro Asp Ser His Gly Tyr Cys Ser Phe Gly Val Ser Thr Asp Tyr 130 135 140 Ser Gln Ala Met Val Gln Ser Ala Lys Leu Ile Ile Ala Glu Val Asn 145 150 155 160 Asp Gln Met Pro Arg Val Leu Gly Asp Asn Phe Ile His Ile Ser Asp 165 170 175 Met Asp Tyr Ile Val Glu Ser Ser Arg Pro Ile Leu Glu Leu Thr Pro 180 185 190 Pro Lys Ile Gly Glu Val Glu Lys Thr Ile Gly Lys Tyr Cys Ala Ser 195 200 205 Leu Val Glu Asp Gly Ser Thr Leu Gln Leu Gly Ile Gly Ala Ile Pro 210 215 220 Asp Ala Val Leu Leu Phe Leu Lys Asp Lys Lys Asp Leu Gly Ile His 225 230 235 240 Ser Glu Met Ile Ser Asp Gly Val Val Glu Leu Val Glu Ala Gly Val 245 250 255 Ile Thr Asn Lys Lys Lys Ser Leu His Pro Gly Lys Ile Ile Ile Thr 260 265 270 Phe Leu Met Gly Thr Lys Lys Leu Tyr Asp Phe Ile Asn Asp Asn Pro 275 280 285 Met Val Glu Gly Tyr Pro Val Asp Tyr Val Asn Asp Pro Lys Val Ile 290 295 300 Met Gln Asn Ser Lys Met Val Cys Ile Asn Ser Cys Val Glu Val Asp 305 310 315 320 Phe Thr Gly Gln Val Cys Ala Glu Ser Val Gly Phe Lys Gln Ile Ser 325 330 335 Gly Val Gly Gly Gln Val Asp Tyr Met Arg Gly Ala Ser Met Ala Asp 340 345 350 Gly Gly Lys Ser Ile Leu Ala Ile Pro Ser Thr Ala Ala Gly Gly Lys 355 360 365 Ile Ser Arg Ile Val Pro Ile Leu Thr Glu Gly Ala Gly Val Thr Thr 370 375 380 Ser Arg Tyr Asp Val Gln Tyr Val Val Thr Glu Tyr Gly Ile Ala Leu 385 390 395 400 Leu Lys Gly Lys Ser Ile Arg Glu Arg Ala Lys Glu Leu Ile Lys Ile 405 410 415 Ala His Pro Lys Phe Arg Glu Glu Leu Thr Ala Gln Phe Glu Lys Arg 420 425 430 Phe Ser Cys Lys Leu 435 124538PRTClostridium kluyveri 124Met Ser Lys Gly Ile Lys Asn Ser Gln Leu Lys Lys Lys Asn Val Lys 1 5 10 15 Ala Ser Asn Val Ala Glu Lys Ile Glu Glu Lys Val Glu Lys Thr Asp 20 25 30 Lys Val Val Glu Lys Ala Ala Glu Val Thr Glu Lys Arg Ile Arg Asn 35 40 45 Leu Lys Leu Gln Glu Lys Val Val Thr Ala Asp Val Ala Ala Asp Met 50 55 60 Ile Glu Asn Gly Met Ile Val Ala Ile Ser Gly Phe Thr Pro Ser Gly 65 70 75 80 Tyr Pro Lys Glu Val Pro Lys Ala Leu Thr Lys Lys Val Asn Ala Leu 85 90 95 Glu Glu Glu Phe Lys Val Thr Leu Tyr Thr Gly Ser Ser Thr Gly Ala 100 105 110 Asp Ile Asp Gly Glu Trp Ala Lys Ala Gly Ile Ile Glu Arg Arg Ile 115 120 125 Pro Tyr Gln Thr Asn Ser Asp Met Arg Lys Lys Ile Asn Asp Gly Ser 130 135 140 Ile Lys Tyr Ala Asp Met His Leu Ser His Met Ala Gln Tyr Ile Asn 145 150 155 160 Tyr Ser Val Ile Pro Lys Val Asp Ile Ala Ile Ile Glu Ala Val Ala 165 170 175 Ile Thr Glu Glu Gly Asp Ile Ile Pro Ser Thr Gly Ile Gly Asn Thr 180 185 190 Ala Thr Phe Val Glu Asn Ala Asp Lys Val Ile Val Glu Ile Asn Glu 195 200 205 Ala Gln Pro Leu Glu Leu Glu Gly Met Ala Asp Ile Tyr Thr Leu Lys 210 215 220 Asn Pro Pro Arg Arg Glu Pro Ile Pro Ile Val Asn Ala Gly Asn Arg 225 230 235 240 Ile Gly Thr Thr Tyr Val Thr Cys Gly Ser Glu Lys Ile Cys Ala Ile 245 250 255 Val Met Thr Asn Thr Gln Asp Lys Thr Arg Pro Leu Thr Glu Val Ser 260 265 270 Pro Val Ser Gln Ala Ile Ser Asp Asn Leu Ile Gly Phe Leu Asn Lys 275 280 285 Glu Val Glu Glu Gly Lys Leu Pro Lys Asn Leu Leu Pro Ile Gln Ser 290 295 300 Gly Val Gly Ser Val Ala Asn Ala Val Leu Ala Gly Leu Cys Glu Ser 305 310 315 320 Asn Phe Lys Asn Leu Ser Cys Tyr Thr Glu Val Ile Gln Asp Ser Met 325 330 335 Leu Lys Leu Ile Lys Cys Gly Lys Ala Asp Val Val Ser Gly Thr Ser 340 345 350 Ile Ser Pro Ser Pro Glu Met Leu Pro Glu Phe Ile Lys Asp Ile Asn 355 360 365 Phe Phe Arg Glu Lys Ile Val Leu Arg Pro Gln Glu Ile Ser Asn Asn 370 375 380 Pro Glu Ile Ala Arg Arg Ile Gly Val Ile Ser Ile Asn Thr Ala Leu 385 390 395 400 Glu Val Asp Ile Tyr Gly Asn Val Asn Ser Thr His Val Met Gly Ser 405 410 415 Lys Met Met Asn Gly Ile Gly Gly Ser Gly Asp Phe Ala Arg Asn Ala 420 425 430 Tyr Leu Thr Ile Phe Thr Thr Glu Ser Ile Ala Lys Lys Gly Asp Ile 435 440 445 Ser Ser Ile Val Pro Met Val Ser His Val Asp His Thr Glu His Asp 450 455 460 Val Met Val Ile Val Thr Glu Gln Gly Val Ala Asp Leu Arg Gly Leu 465 470 475 480 Ser Pro Arg Glu Lys Ala Val Ala Ile Ile Glu Asn Cys Val His Pro 485 490 495 Asp Tyr Lys Asp Met Leu Met Glu Tyr Phe Glu Glu Ala Cys Lys Ser 500 505 510 Ser Gly Gly Asn Thr Pro His Asn Leu Glu Lys Ala Leu Ser Trp His 515 520 525 Thr Lys Phe Ile Lys Thr Gly Ser Met Lys 530 535 125232PRTPseudomonas fluorescens 125Met Ala Gly Phe Asp Lys Arg Val Ala Ser Tyr Glu Glu Ala Leu Glu 1 5 10 15 Gly Leu Gln Asp Gly Met Thr Val Ile Ala Gly Gly Phe Gly Leu Cys 20 25 30 Gly Ile Pro Glu Asn Leu Ile Ala Glu Ile Lys Arg Arg Gly Thr Arg 35 40 45 Asp Leu Thr Val Val Ser Asn Asn Cys Gly Val Asp Gly Phe Gly Leu 50 55 60 Gly Val Leu Leu Glu Asp Arg Gln Ile Ser Lys Val Ile Ala Ser Tyr 65 70 75 80 Val Gly Glu Asn Ala Leu Phe Glu Lys Gln Leu Leu Ser Gly Glu Ile 85 90 95 Glu Val Val Leu Thr Pro Gln Gly Thr Leu Ala Glu Lys Met Arg Ala 100 105 110 Gly Gly Ala Gly Ile Pro Ala Phe Phe Thr Ala Thr Gly Val Gly Thr 115 120 125 Pro Val Ala Asp Gly Lys Glu Thr Arg Glu Phe Lys Gly Arg Thr Tyr 130 135 140 Leu Met Glu Glu Ser Ile Thr Gly Asp Phe Ala Ile Val Lys Gly Trp 145 150 155 160 Lys Ala Asp His Phe Gly Asn Val Val Tyr Arg His Thr Ala Gln Asn 165 170 175 Phe Asn Pro Leu Ala Ala Thr Ala Gly Lys Ile Thr Val Val Glu Val 180 185 190 Glu Glu Ile Val Glu Pro Gly Glu Leu Asp Pro Thr Gln Ile His Thr 195 200 205 Pro Gly Ile Tyr Val Asp Arg Val Ile Cys Gly Thr Phe Glu Lys Arg 210 215 220 Ile Glu Gln Arg Thr Val Arg Lys 225 230 126219PRTPseudomonas fluorescens 126Met Ala Leu Thr Arg Glu Gln Met Ala Gln Arg Val Ala Arg Glu Leu 1 5 10 15 Gln Asp Gly Phe Tyr Val Asn Leu Gly Ile Gly Ile Pro Thr Leu Val 20 25 30 Ala Asn Tyr Ile Pro Asp Gly Met Glu Val Met Leu Gln Ser Glu Asn 35 40 45 Gly Leu Leu Gly Met Gly Ala Phe Pro Thr Glu Asp Glu Val Asp Ala 50 55 60 Asp Met Ile Asn Ala Gly Lys Gln Thr Val Thr Ala Arg Ile Gly Ala 65 70 75 80 Ser Ile Phe Ser Ser Ala Glu Ser Phe Ala Met Ile Arg Gly Gly His 85 90 95 Ile Asp Leu Thr Val Leu Gly Ala Phe Glu Val Asp Val Gln Gly Asn 100 105 110 Ile Ala Ser Trp Met Ile Pro Gly Lys Leu Val Lys Gly Met Gly Gly 115 120 125 Ala Met Asp Leu Val Ala Gly Ala Glu Asn Ile Ile Val Thr Met Thr 130 135 140 His Ala Ser Lys Asp Gly Glu Ser Lys Leu Leu Ser Arg Cys Ser Leu 145 150 155 160 Pro Leu Thr Gly Ala Gln Cys Ile Lys Arg Val Leu Thr Asp Leu Ala 165 170 175 Tyr Leu Glu Ile Glu Asn Gly Ala Phe Ile Leu Lys Glu Arg Ala Pro 180 185 190 Gly Val Ser Val Glu Glu Ile Val Ser Lys Thr Ala Gly Lys Leu Ile 195 200 205 Val Pro Asp His Val Pro Glu Met Gln Phe Ala 210 215 127477PRTAcinetobacter sp. 127Met Asn Tyr Pro Asn Ile Pro Leu Tyr Ile Asn Gly Glu Phe Leu Asp 1 5 10 15 His Thr Asn Arg Asp Val Lys Glu Val Phe Asn Pro Val Asn His Glu 20 25 30 Cys Ile Gly Leu Met Ala Cys Ala Ser Gln Ala Asp Leu Asp Tyr Ala 35 40 45 Leu Glu Ser Ser Gln Gln Ala Phe Leu Arg Trp Lys Lys Thr Ser Pro 50 55 60 Ile Thr Arg Ser Glu Ile Leu Arg Thr Phe Ala Lys Leu Ala Arg Glu 65 70 75 80 Lys Ala Ala Glu Ile Gly Arg Asn Ile Thr Leu Asp Gln Gly Lys Pro 85 90 95 Leu Lys Glu Ala Ile Ala Glu Val Thr Val Cys Ala Glu His Ala Glu 100 105 110 Trp His Ala Glu Glu Cys Arg Arg Ile Tyr Gly Arg Val Ile Pro Pro 115 120 125 Arg Asn Pro Asn Val Gln Gln Leu Val Val Arg Glu Pro Leu Gly Val 130 135 140 Cys Leu Ala Phe Ser Pro Trp Asn Phe Pro Phe Asn Gln Ala Ile Arg 145 150 155 160 Lys Ile Ser Ala Ala Ile Ala Ala Gly Cys Thr Ile Ile Val Lys Gly 165 170 175 Ser Gly Asp Thr Pro Ser Ala Val Tyr Ala Ile Ala Gln Leu Phe His 180 185 190 Glu Ala Gly Leu Pro Asn Gly Val Leu Asn Val Ile Trp Gly Asp Ser 195 200 205 Asn Phe Ile Ser Asp Tyr Met Ile Lys Ser Pro Ile Ile Gln Lys Ile 210 215 220 Ser Phe Thr Gly Ser Thr Pro Val Gly Lys Lys Leu Ala Ser Gln Ala 225 230 235 240 Ser Leu Tyr Met Lys Pro Cys Thr Met Glu Leu Gly Gly His Ala Pro 245 250 255 Val Ile Val Cys Asp Asp Ala Asp Ile Asp Ala Ala Val Glu His Leu 260 265 270 Val Gly Tyr Lys Phe Arg Asn Ala Gly Gln Val Cys Val Ser Pro Thr 275 280 285 Arg Phe Tyr Val Gln Glu Gly Ile Tyr Lys Glu Phe Ser Glu Lys Val 290 295 300 Val Leu Arg Ala Lys Gln Ile Lys Val Gly Cys Gly Leu Asp Ala Ser 305 310 315 320 Ser Asp Met Gly Pro Leu Ala Gln Ala Arg Arg Met His Ala Met Gln 325 330 335 Gln Ile Val Glu Asp Ala Val His Lys Gly Ser Lys Leu Leu Leu Gly 340 345 350 Gly Asn Lys Ile Ser Asp Lys Gly Asn Phe Phe Glu Pro Thr Val Leu 355 360 365 Gly Asp Leu Cys Asn Asp Thr Gln Phe Met Asn Asp Glu Pro Phe Gly 370 375 380 Pro Ile Ile Gly Leu Ile Pro Phe Asp Thr Ile Asp His Val Leu Glu 385 390 395 400 Glu Ala Asn Arg Leu Pro Phe Gly Leu Ala Ser Tyr Ala Phe Thr Thr 405 410 415 Ser Ser Lys Asn Ala His Gln Ile Ser Tyr Gly Leu Glu Ala Gly Met 420 425 430 Val Ser Ile Asn His Met Gly Leu Ala Leu Ala Glu Thr Pro Phe Gly 435 440 445 Gly Ile Lys Asp Ser Gly Phe Gly Ser Glu Gly Gly Ile Glu Thr Phe 450 455 460 Asp Gly Tyr Leu Arg Thr Lys Phe Ile Thr Gln Leu Asn 465 470 475 128473PRTBrucella melitensis 128Met Arg Ile Gly Lys Met Glu Met Gln Thr Arg Tyr Pro Asp Val Lys 1 5 10 15 Leu Phe Ile Asp Gly Thr Trp Arg Asp Gly Ser Arg Gly Glu Thr Ile 20 25 30 Glu Ile Phe Asn Pro Ala Thr Asp Glu Val Ile Gly His Ile Ala Arg 35 40 45 Ala Thr Thr Ala Asp Leu Asp Asp Ala Leu Ala Ala Val Asp Arg Gly 50 55 60 Phe Glu Ala Trp Ser Lys Val Ser Ala Phe Asp Arg Tyr Lys Ile Met 65 70 75 80 Arg Arg Ala Ala Asp Ile Phe Arg Ser Arg Gly Glu Glu Val Ala Arg 85 90 95 Leu Leu Thr Met Glu Gln Gly Lys Pro Leu Ala Glu Ala Arg Ile Glu 100 105 110 Ala Ala Ala Ala Cys Asp Leu Ile Asp Trp Phe Ala Glu Glu Ala Arg 115 120 125 Arg Ser Tyr Gly Arg Ile Val Pro Pro Arg Gln Ala Tyr Val Met Gln 130 135 140 Ala Glu Val Lys Glu Pro Val Gly Pro Val Ala Ala Phe Thr Pro Trp 145 150 155 160 Asn Phe Pro Ile Asn Gln Ala Val Arg Lys Ile Ser Ala Ala Leu Ala 165 170 175 Ala Gly Cys Ser Ile Leu Leu Lys Ala Ala Glu Asp Thr Pro Ala Ala 180 185 190 Pro Ala Glu Leu Val Arg Ala Phe Ala Glu Ala Gly Leu Pro Asp Gly 195 200 205 Ala Ile Asn Leu Val Tyr Gly Asp Pro Ala Glu Ile Ser Ala Tyr Leu 210 215 220 Ile Pro His Pro Val Ile

Arg Lys Val Ser Phe Thr Gly Ser Thr Gln 225 230 235 240 Val Gly Lys Gln Leu Ala Ala Leu Ala Gly Leu His Met Lys Arg Val 245 250 255 Thr Met Glu Leu Gly Gly His Ala Pro Val Ile Ile Ala Ala Asp Ala 260 265 270 Asp Val Glu Gln Ala Ile Lys Val Val Ser Gly Ser Lys Phe Arg Asn 275 280 285 Ala Gly Gln Val Cys Ile Ser Pro Thr Arg Phe Leu Ile Glu Asn Ser 290 295 300 Val Tyr Asp Gln Val Val Glu Gly Met Ala Ala Tyr Ala Thr Ser Leu 305 310 315 320 Lys Val Gly Asp Gly Leu Glu Ala Gly Thr Thr Met Gly Pro Leu Val 325 330 335 Asn Ala Lys Arg Val Asn Ala Met Glu Arg Leu Val Gln Asp Ala Arg 340 345 350 Glu His Lys Ala Arg Val Val Thr Gly Gly Glu Arg Ile Gly Asn Arg 355 360 365 Gly Asn Phe Phe Glu Pro Thr Ile Leu Ala Asp Val Pro Arg Asp Ala 370 375 380 Ala Ile Met Asn Glu Glu Pro Phe Gly Pro Val Ala Leu Leu Asn Arg 385 390 395 400 Phe Asp Ala Leu Asp Glu Ala Leu Ser Glu Ala Asn Arg Leu Asn Tyr 405 410 415 Gly Leu Ala Ala Tyr Ala Phe Thr Gly Ser Ser Ala Lys Ala Ala Arg 420 425 430 Ile Ser Ser Thr Val Arg Ser Gly Met Ile Thr Ile Asn Gln Leu Arg 435 440 445 Ser Gly Pro Ala Gly Ser Ala Leu Arg Arg Asp Gln Arg Phe Arg Leu 450 455 460 Trp Asn Gly Arg Arg Cys Arg Arg Ala 465 470 1291371DNAArtificialPseudomonas aeruginosa 129atgaacagcc aaatcaccaa cgccaagacc cgtgagtggc aggcgttgag ccgcgaccac 60catctgccgc cgttcaccga ctacaagcag ttgaacgaga agggcgcgcg gatcatcacc 120aaggccgaag gcgtctatat ctgggacagc gagggcaaca agatcctcga tgcgatggcc 180ggcctctggt gcgtcaacgt cggctacggc cgcgaggagc tggtccaggc cgccacccgg 240cagatgcgcg agttgccgtt ctacaacctg ttcttccaga ccgcccaccc gccggtggtc 300gagctggcca aggcgatcgc cgacgtcgct ccggaaggca tgaaccacgt gttcttcacc 360ggctccggct ccgaggccaa cgacaccgtg ctgcgtatgg tccgccacta ttgggcgacc 420aagggccagc cgcagaagaa agtggtgatc ggccgctgga acggctacca cggctccacc 480gtcgccggcg tcagcctggg cggcatgaag gcgttgcatg agcagggtga tttccccatc 540ccgggcatcg tccacatcgc ccagccctac tggtacggcg agggcggcga catgtcgccg 600gacgagttcg gcgtctgggc cgccgagcag ttggagaaga agattctcga agtgggcgag 660gaaaacgtcg ccgccttcat cgccgagccg atccagggcg ccggcggcgt gatcgtcccg 720ccggacacct actggccgaa gatccgcgag atcctcgcca agtacgacat cctgttcatc 780gccgacgaag tgatctgcgg cttcggccgt accggcgagt ggttcggcag ccagtactac 840ggcaacgccc cggacctgat gccgatcgcc aagggcctca cctccggcta catccccatg 900ggcggggtgg tggtgcgcga cgagatcgtc gaagtgctca accagggcgg cgagttctac 960cacggcttca cctattccgg tcacccggtg gcggccgccg tggccctgga gaacatccgc 1020atcctgcgcg aagagaagat catcgagaag gtgaaggcgg aaacggcacc gtatttgcag 1080aaacgctggc aggagctggc cgaccacccg ttggtgggcg aagcgcgcgg ggtcggcatg 1140gtcgccgccc tggagctggt caagaacaag aagacccgcg agcgtttcac cgacaagggc 1200gtcgggatgc tgtgccggga acattgtttc cgcaacggtt tgatcatgcg cgcggtgggc 1260gacactatga ttatctcgcc gccgctggtg atcgatccgt cgcagatcga tgagttgatc 1320accctggcgc gcaagtgcct cgatcagacc gccgccgccg tcctggcttg a 1371130456PRTPseudomonas aeruginosa 130Met Asn Ser Gln Ile Thr Asn Ala Lys Thr Arg Glu Trp Gln Ala Leu 1 5 10 15 Ser Arg Asp His His Leu Pro Pro Phe Thr Asp Tyr Lys Gln Leu Asn 20 25 30 Glu Lys Gly Ala Arg Ile Ile Thr Lys Ala Glu Gly Val Tyr Ile Trp 35 40 45 Asp Ser Glu Gly Asn Lys Ile Leu Asp Ala Met Ala Gly Leu Trp Cys 50 55 60 Val Asn Val Gly Tyr Gly Arg Glu Glu Leu Val Gln Ala Ala Thr Arg 65 70 75 80 Gln Met Arg Glu Leu Pro Phe Tyr Asn Leu Phe Phe Gln Thr Ala His 85 90 95 Pro Pro Val Val Glu Leu Ala Lys Ala Ile Ala Asp Val Ala Pro Glu 100 105 110 Gly Met Asn His Val Phe Phe Thr Gly Ser Gly Ser Glu Ala Asn Asp 115 120 125 Thr Val Leu Arg Met Val Arg His Tyr Trp Ala Thr Lys Gly Gln Pro 130 135 140 Gln Lys Lys Val Val Ile Gly Arg Trp Asn Gly Tyr His Gly Ser Thr 145 150 155 160 Val Ala Gly Val Ser Leu Gly Gly Met Lys Ala Leu His Glu Gln Gly 165 170 175 Asp Phe Pro Ile Pro Gly Ile Val His Ile Ala Gln Pro Tyr Trp Tyr 180 185 190 Gly Glu Gly Gly Asp Met Ser Pro Asp Glu Phe Gly Val Trp Ala Ala 195 200 205 Glu Gln Leu Glu Lys Lys Ile Leu Glu Val Gly Glu Glu Asn Val Ala 210 215 220 Ala Phe Ile Ala Glu Pro Ile Gln Gly Ala Gly Gly Val Ile Val Pro 225 230 235 240 Pro Asp Thr Tyr Trp Pro Lys Ile Arg Glu Ile Leu Ala Lys Tyr Asp 245 250 255 Ile Leu Phe Ile Ala Asp Glu Val Ile Cys Gly Phe Gly Arg Thr Gly 260 265 270 Glu Trp Phe Gly Ser Gln Tyr Tyr Gly Asn Ala Pro Asp Leu Met Pro 275 280 285 Ile Ala Lys Gly Leu Thr Ser Gly Tyr Ile Pro Met Gly Gly Val Val 290 295 300 Val Arg Asp Glu Ile Val Glu Val Leu Asn Gln Gly Gly Glu Phe Tyr 305 310 315 320 His Gly Phe Thr Tyr Ser Gly His Pro Val Ala Ala Ala Val Ala Leu 325 330 335 Glu Asn Ile Arg Ile Leu Arg Glu Glu Lys Ile Ile Glu Lys Val Lys 340 345 350 Ala Glu Thr Ala Pro Tyr Leu Gln Lys Arg Trp Gln Glu Leu Ala Asp 355 360 365 His Pro Leu Val Gly Glu Ala Arg Gly Val Gly Met Val Ala Ala Leu 370 375 380 Glu Leu Val Lys Asn Lys Lys Thr Arg Glu Arg Phe Thr Asp Lys Gly 385 390 395 400 Val Gly Met Leu Cys Arg Glu His Cys Phe Arg Asn Gly Leu Ile Met 405 410 415 Arg Ala Val Gly Asp Thr Met Ile Ile Ser Pro Pro Leu Val Ile Asp 420 425 430 Pro Ser Gln Ile Asp Glu Leu Ile Thr Leu Ala Arg Lys Cys Leu Asp 435 440 445 Gln Thr Ala Ala Ala Val Leu Ala 450 455 13170DNAArtificialprimer 131ggggacaagt ttgtacaaaa aagcaggcta ggaggaatta accatgaaca gccaaatcac 60caacgccaag 7013249DNAArtificialprimer 132ggggaccact ttgtacaaga aagctgggtt caagccagga cggcggcgg 491331353DNAArtificialBacillus subtilis 133atggagatga tggggatgga aaacattcag caaaatcagg gattaaagca aaaagatgag 60caatttgtgt ggcatgccat gaagggagcg catcaagcgg acagcctgat agcccagaag 120gccgaagggg cctgggtaac cgacacagac ggacgccgct atttggatgc gatgtccggt 180ttgtggtgcg tcaacattgg ttacggcaga aaggagcttg cggaggctgc ctatgagcaa 240ctaaaggagc tgccttacta cccgttaacg caaagtcacg cacccgcaat tcaactggcg 300gaaaagctga atgaatggct tggcggcgat tatgttattt ttttttccaa cagcggatcg 360gaagcaaacg aaactgcttt taaaattgcc cgccagtacc atctgcaaaa cggcgaccac 420agccgttata aattcatctc aagatatcgg gcataccacg gcaatacatt gggagcgctc 480tcagctaccg gacaggcgca gcggaaatat aaatacgagc ctttgagcca agggttcctg 540catgcagctc cgccagatat ataccggaat cctgatgatg cagacacgct tgaaagcgca 600aatgaaatcg accgcatcat gacatgggaa ttaagcgaaa cgattgccgg ggtcattatg 660gagcccatca ttacaggcgg aggcatccta atgccgccgg acggatatat gaagaaggtg 720gaggacattt gccggcgcca cggagccctt ttgatttgcg atgaagtgat ctgcgggttt 780ggacggacag gtgagccgtt cgggtttatg cactacggtg tgaagcctga tatcattacg 840atggcaaagg gaatcacaag cgcgtatctg ccattgtcag cgactgctgt gaaacgggac 900attttcgaag cgtatcaggg ggaagctcct tatgaccgtt tccgccacgt gaacacgttc 960ggcggaagcc cggctgcctg tgctttggcg ttgaaaaacc tgcaaattat ggaggacgaa 1020cagctgattc agcgatcccg tgatcttgga gcaaagcttt taggtgagct tcaagctctg 1080agagaacacc cggcagtcgg ggatgttaga ggaaaagggc tgctgatcgg aatcgaactc 1140gtcaaagaca aattgactaa agagccggct gatgccgcca aagtaaacca agtggttgcg 1200gcgtgcaaag aaaaagggct gatcatcggc aaaaacggcg atacagtcgc cggctacaac 1260aatgtcatcc acgttgcgcc gccattttgc ctgacagaag aggacctttc ctttatcgtg 1320aaaacggtga aagaaagctt tcaaacgata taa 1353134450PRTBacillus subtilis 134Met Glu Met Met Gly Met Glu Asn Ile Gln Gln Asn Gln Gly Leu Lys 1 5 10 15 Gln Lys Asp Glu Gln Phe Val Trp His Ala Met Lys Gly Ala His Gln 20 25 30 Ala Asp Ser Leu Ile Ala Gln Lys Ala Glu Gly Ala Trp Val Thr Asp 35 40 45 Thr Asp Gly Arg Arg Tyr Leu Asp Ala Met Ser Gly Leu Trp Cys Val 50 55 60 Asn Ile Gly Tyr Gly Arg Lys Glu Leu Ala Glu Ala Ala Tyr Glu Gln 65 70 75 80 Leu Lys Glu Leu Pro Tyr Tyr Pro Leu Thr Gln Ser His Ala Pro Ala 85 90 95 Ile Gln Leu Ala Glu Lys Leu Asn Glu Trp Leu Gly Gly Asp Tyr Val 100 105 110 Ile Phe Phe Ser Asn Ser Gly Ser Glu Ala Asn Glu Thr Ala Phe Lys 115 120 125 Ile Ala Arg Gln Tyr His Leu Gln Asn Gly Asp His Ser Arg Tyr Lys 130 135 140 Phe Ile Ser Arg Tyr Arg Ala Tyr His Gly Asn Thr Leu Gly Ala Leu 145 150 155 160 Ser Ala Thr Gly Gln Ala Gln Arg Lys Tyr Lys Tyr Glu Pro Leu Ser 165 170 175 Gln Gly Phe Leu His Ala Ala Pro Pro Asp Ile Tyr Arg Asn Pro Asp 180 185 190 Asp Ala Asp Thr Leu Glu Ser Ala Asn Glu Ile Asp Arg Ile Met Thr 195 200 205 Trp Glu Leu Ser Glu Thr Ile Ala Gly Val Ile Met Glu Pro Ile Ile 210 215 220 Thr Gly Gly Gly Ile Leu Met Pro Pro Asp Gly Tyr Met Lys Lys Val 225 230 235 240 Glu Asp Ile Cys Arg Arg His Gly Ala Leu Leu Ile Cys Asp Glu Val 245 250 255 Ile Cys Gly Phe Gly Arg Thr Gly Glu Pro Phe Gly Phe Met His Tyr 260 265 270 Gly Val Lys Pro Asp Ile Ile Thr Met Ala Lys Gly Ile Thr Ser Ala 275 280 285 Tyr Leu Pro Leu Ser Ala Thr Ala Val Lys Arg Asp Ile Phe Glu Ala 290 295 300 Tyr Gln Gly Glu Ala Pro Tyr Asp Arg Phe Arg His Val Asn Thr Phe 305 310 315 320 Gly Gly Ser Pro Ala Ala Cys Ala Leu Ala Leu Lys Asn Leu Gln Ile 325 330 335 Met Glu Asp Glu Gln Leu Ile Gln Arg Ser Arg Asp Leu Gly Ala Lys 340 345 350 Leu Leu Gly Glu Leu Gln Ala Leu Arg Glu His Pro Ala Val Gly Asp 355 360 365 Val Arg Gly Lys Gly Leu Leu Ile Gly Ile Glu Leu Val Lys Asp Lys 370 375 380 Leu Thr Lys Glu Pro Ala Asp Ala Ala Lys Val Asn Gln Val Val Ala 385 390 395 400 Ala Cys Lys Glu Lys Gly Leu Ile Ile Gly Lys Asn Gly Asp Thr Val 405 410 415 Ala Gly Tyr Asn Asn Val Ile His Val Ala Pro Pro Phe Cys Leu Thr 420 425 430 Glu Glu Asp Leu Ser Phe Ile Val Lys Thr Val Lys Glu Ser Phe Gln 435 440 445 Thr Ile 450 1351407DNAArtificialPseudomonas aeruginosa 135atgaacgcaa gactgcacgc cacgtccccc ctcggcgacg ccgacctggt ccgtgccgac 60caggcccact acatgcacgg ctaccacgtg ttcgacgacc accgcgtcaa cggctcgctg 120aacatcgccg ccggcgacgg cgcctatatc tacgacaccg ccggcaaccg ctacctcgac 180gcggtgggcg gcatgtggtg caccaacatc ggcctggggc gcgaggaaat ggctcgcacc 240gtggccgagc agacccgcct gctggcctat tccaatccct tctgcgacat ggccaacccg 300cgcgccatcg aactctgccg caagctcgcc gagctggccc ccggcgacct cgaccacgtg 360ttcctcacca ccggcggttc caccgccgtg gacaccgcga tccgcctcat gcactactac 420cagaactgcc gcggcaagcg cgccaagaag cacgtcatca cgcggatcaa cgcctaccac 480ggctcgacct tcctcggcat gtcgctgggc ggcaagagcg ccgaccggcc ggccgagttc 540gacttcctcg acgagcgcat ccaccacctc gcctgtccct attactaccg cgctccggaa 600gggctgggcg aagccgagtt cctcgatggc ctggtggacg agttcgaacg caagatcctc 660gaactgggcg ccgaccgggt gggggcgttc atctccgagc cggtgttcgg ctccggcggc 720gtgatcgtcc cgcccgcggg ctaccacagg cggatgtggg agctgtgcca gcgctacgac 780gtgctgtaca tctccgacga agtggtgacc tccttcggcc gcctcggcca cttcttcgcc 840agccaggcgg tgttcggcgt acagccggac atcatcctca ccgccaaggg cctcacctcc 900ggctaccagc cgctgggcgc gtgcatcttc tcccggcgca tctgggaggt gatcgccgag 960ccggacaagg gccgctgctt cagccatggt ttcacctact ccggccaccc ggtggcctgc 1020gcggcggcgc tgaagaacat cgagatcatc gagcgcgagg gcttgctcgc ccacgccgac 1080gaggtcggcc gctacttcga ggagcgcctg caaagcctcc gcgacctgcc catcgtcggc 1140gacgtgcgcg ggatgcgctt catggcctgt gtcgagttcg tcgccgacaa ggcgagcaag 1200gcgctgtttc cggaaagcct gaacatcggc gagtgggtcc acctgcgggc gcagaagcgc 1260ggcctgctgg ttcgtccgat cgtccacctg aacgtgatgt cgccgccgct gatcctcacc 1320cgcgaacagg tcgataccgt ggtccgggtg ctgcgcgaga gcatcgagga aaccgtggag 1380gatcttgtcc gcgccggtca ccggtaa 1407136468PRTPseudomonas aeruginosa 136Met Asn Ala Arg Leu His Ala Thr Ser Pro Leu Gly Asp Ala Asp Leu 1 5 10 15 Val Arg Ala Asp Gln Ala His Tyr Met His Gly Tyr His Val Phe Asp 20 25 30 Asp His Arg Val Asn Gly Ser Leu Asn Ile Ala Ala Gly Asp Gly Ala 35 40 45 Tyr Ile Tyr Asp Thr Ala Gly Asn Arg Tyr Leu Asp Ala Val Gly Gly 50 55 60 Met Trp Cys Thr Asn Ile Gly Leu Gly Arg Glu Glu Met Ala Arg Thr 65 70 75 80 Val Ala Glu Gln Thr Arg Leu Leu Ala Tyr Ser Asn Pro Phe Cys Asp 85 90 95 Met Ala Asn Pro Arg Ala Ile Glu Leu Cys Arg Lys Leu Ala Glu Leu 100 105 110 Ala Pro Gly Asp Leu Asp His Val Phe Leu Thr Thr Gly Gly Ser Thr 115 120 125 Ala Val Asp Thr Ala Ile Arg Leu Met His Tyr Tyr Gln Asn Cys Arg 130 135 140 Gly Lys Arg Ala Lys Lys His Val Ile Thr Arg Ile Asn Ala Tyr His 145 150 155 160 Gly Ser Thr Phe Leu Gly Met Ser Leu Gly Gly Lys Ser Ala Asp Arg 165 170 175 Pro Ala Glu Phe Asp Phe Leu Asp Glu Arg Ile His His Leu Ala Cys 180 185 190 Pro Tyr Tyr Tyr Arg Ala Pro Glu Gly Leu Gly Glu Ala Glu Phe Leu 195 200 205 Asp Gly Leu Val Asp Glu Phe Glu Arg Lys Ile Leu Glu Leu Gly Ala 210 215 220 Asp Arg Val Gly Ala Phe Ile Ser Glu Pro Val Phe Gly Ser Gly Gly 225 230 235 240 Val Ile Val Pro Pro Ala Gly Tyr His Arg Arg Met Trp Glu Leu Cys 245 250 255 Gln Arg Tyr Asp Val Leu Tyr Ile Ser Asp Glu Val Val Thr Ser Phe 260 265 270 Gly Arg Leu Gly His Phe Phe Ala Ser Gln Ala Val Phe Gly Val Gln 275 280 285 Pro Asp Ile Ile Leu Thr Ala Lys Gly Leu Thr Ser Gly Tyr Gln Pro 290 295 300 Leu Gly Ala Cys Ile Phe Ser Arg Arg Ile Trp Glu Val Ile Ala Glu 305 310 315 320 Pro Asp Lys Gly Arg Cys Phe Ser His Gly Phe Thr Tyr Ser Gly His 325 330 335 Pro Val Ala Cys Ala Ala Ala Leu Lys Asn Ile Glu Ile Ile Glu Arg 340 345 350 Glu Gly Leu Leu Ala His Ala Asp Glu Val Gly Arg Tyr Phe Glu Glu 355 360 365 Arg Leu Gln Ser Leu Arg Asp Leu Pro Ile Val Gly Asp Val Arg Gly 370 375 380 Met Arg Phe Met Ala Cys Val Glu Phe Val Ala Asp Lys Ala Ser Lys 385 390 395 400 Ala Leu Phe Pro Glu Ser Leu Asn Ile Gly Glu Trp Val His Leu Arg 405 410 415 Ala Gln Lys Arg Gly Leu Leu Val Arg Pro Ile Val His Leu Asn Val 420 425 430 Met Ser Pro Pro Leu Ile Leu Thr

Arg Glu Gln Val Asp Thr Val Val 435 440 445 Arg Val Leu Arg Glu Ser Ile Glu Glu Thr Val Glu Asp Leu Val Arg 450 455 460 Ala Gly His Arg 465 1371335DNAArtificialPseudomonas aeruginosa 137atgacaatga atgacgagcc gcagtcgagc agcctcgaca acttctggat gcccttcacc 60gccaaccgcc agttcaaggc gcggccgcgc ctgctggaaa gcgccgaagg catccactat 120atcgcccagg gcgggcgccg catcctcgac ggcaccgccg gcctctggtg ctgcaatgcc 180ggccacggcc ggcgcgagat cagcgaagcg gtggcccggc agatcgccac cctcgactac 240gccccgccgt tccagatggg tcacccgctg ccgttcgaac tcgccgcgcg gctgacggaa 300atcgccccgc cgagcctgaa caaagtattc ttcaccaact ccggctcgga atcggcggac 360accgcgctga agatcgccct tgcctaccag cgcgccatcg gccagggcac ccgcacccgc 420ctgatcggcc gcgaactggg ctaccacggg gtcggcttcg gcggcctgtc ggtaggcggt 480atggtcaaca accgcaaggc cttctccgcc aacctgctgc cgggggtcga ccacctgccg 540cacaccctgg acgtcgcccg caacgccttc accgtcggcc tgcccgagca tggcgtggaa 600aaggccgagg agctggaacg cctggtgacc ctgcacggcg ccgagaatat cgccgcggtg 660atcgtcgagc cgatgtccgg ctcggccggc gtggtgctgc cgcccaaggg ctaccttcag 720cggctgcgcg agataacccg caagcatggc atcctgctga tcttcgacga agtgatcacc 780ggtttcggcc gcgtcggcga agccttcgcc gcgcagcgct ggggcgtcgt cccggacctg 840ctgacctgcg ccaaggggct gaccaacggc agcatcccga tgggcgccgt attcgtcgac 900gagaagatcc atgctgcctt catgcaaggc ccgcagggcg ccatcgagtt cttccacggc 960tatacctatt ccggccatcc ggtagcctgc gccgccgccc tggcgaccct ggacatctac 1020cgtcgcgacg acctgttcca gcgggccgtc gaactggaag gctactggca ggacgcgctg 1080ttcagcctgc gcgacctgcc caacgtggtc gacatccgcg ccgtaggcct ggtcggcggc 1140gtgcaactgg cgccgcacgc ggacggcccc ggcaagcgcg gctacgacgt cttcgagcgc 1200tgcttctggg agcacgacct gatggtccgg gtgaccggcg acatcatcgc catgtcgccg 1260ccgctgatca tcgacaagcc ccacatcgac cagatcgtcg agcgcctggc ccaggccatc 1320cgcgccagcg tctga 1335138444PRTPseudomonas aeruginosa 138Met Thr Met Asn Asp Glu Pro Gln Ser Ser Ser Leu Asp Asn Phe Trp 1 5 10 15 Met Pro Phe Thr Ala Asn Arg Gln Phe Lys Ala Arg Pro Arg Leu Leu 20 25 30 Glu Ser Ala Glu Gly Ile His Tyr Ile Ala Gln Gly Gly Arg Arg Ile 35 40 45 Leu Asp Gly Thr Ala Gly Leu Trp Cys Cys Asn Ala Gly His Gly Arg 50 55 60 Arg Glu Ile Ser Glu Ala Val Ala Arg Gln Ile Ala Thr Leu Asp Tyr 65 70 75 80 Ala Pro Pro Phe Gln Met Gly His Pro Leu Pro Phe Glu Leu Ala Ala 85 90 95 Arg Leu Thr Glu Ile Ala Pro Pro Ser Leu Asn Lys Val Phe Phe Thr 100 105 110 Asn Ser Gly Ser Glu Ser Ala Asp Thr Ala Leu Lys Ile Ala Leu Ala 115 120 125 Tyr Gln Arg Ala Ile Gly Gln Gly Thr Arg Thr Arg Leu Ile Gly Arg 130 135 140 Glu Leu Gly Tyr His Gly Val Gly Phe Gly Gly Leu Ser Val Gly Gly 145 150 155 160 Met Val Asn Asn Arg Lys Ala Phe Ser Ala Asn Leu Leu Pro Gly Val 165 170 175 Asp His Leu Pro His Thr Leu Asp Val Ala Arg Asn Ala Phe Thr Val 180 185 190 Gly Leu Pro Glu His Gly Val Glu Lys Ala Glu Glu Leu Glu Arg Leu 195 200 205 Val Thr Leu His Gly Ala Glu Asn Ile Ala Ala Val Ile Val Glu Pro 210 215 220 Met Ser Gly Ser Ala Gly Val Val Leu Pro Pro Lys Gly Tyr Leu Gln 225 230 235 240 Arg Leu Arg Glu Ile Thr Arg Lys His Gly Ile Leu Leu Ile Phe Asp 245 250 255 Glu Val Ile Thr Gly Phe Gly Arg Val Gly Glu Ala Phe Ala Ala Gln 260 265 270 Arg Trp Gly Val Val Pro Asp Leu Leu Thr Cys Ala Lys Gly Leu Thr 275 280 285 Asn Gly Ser Ile Pro Met Gly Ala Val Phe Val Asp Glu Lys Ile His 290 295 300 Ala Ala Phe Met Gln Gly Pro Gln Gly Ala Ile Glu Phe Phe His Gly 305 310 315 320 Tyr Thr Tyr Ser Gly His Pro Val Ala Cys Ala Ala Ala Leu Ala Thr 325 330 335 Leu Asp Ile Tyr Arg Arg Asp Asp Leu Phe Gln Arg Ala Val Glu Leu 340 345 350 Glu Gly Tyr Trp Gln Asp Ala Leu Phe Ser Leu Arg Asp Leu Pro Asn 355 360 365 Val Val Asp Ile Arg Ala Val Gly Leu Val Gly Gly Val Gln Leu Ala 370 375 380 Pro His Ala Asp Gly Pro Gly Lys Arg Gly Tyr Asp Val Phe Glu Arg 385 390 395 400 Cys Phe Trp Glu His Asp Leu Met Val Arg Val Thr Gly Asp Ile Ile 405 410 415 Ala Met Ser Pro Pro Leu Ile Ile Asp Lys Pro His Ile Asp Gln Ile 420 425 430 Val Glu Arg Leu Ala Gln Ala Ile Arg Ala Ser Val 435 440 139467PRTEscherichia coli 139Met Asn Gln Gln Asp Ile Glu Gln Val Val Lys Ala Val Leu Leu Lys 1 5 10 15 Met Gln Ser Ser Asp Thr Pro Ser Ala Ala Val His Glu Met Gly Val 20 25 30 Phe Ala Ser Leu Asp Asp Ala Val Ala Ala Ala Lys Val Ala Gln Gln 35 40 45 Gly Leu Lys Ser Val Ala Met Arg Gln Leu Ala Ile Ala Ala Ile Arg 50 55 60 Glu Ala Gly Glu Lys His Ala Arg Asp Leu Ala Glu Leu Ala Val Ser 65 70 75 80 Glu Thr Gly Met Gly Arg Val Glu Asp Lys Phe Ala Lys Asn Val Ala 85 90 95 Gln Ala Arg Gly Thr Pro Gly Val Glu Cys Leu Ser Pro Gln Val Leu 100 105 110 Thr Gly Asp Asn Gly Leu Thr Leu Ile Glu Asn Ala Pro Trp Gly Val 115 120 125 Val Ala Ser Val Thr Pro Ser Thr Asn Pro Ala Ala Thr Val Ile Asn 130 135 140 Asn Ala Ile Ser Leu Ile Ala Ala Gly Asn Ser Val Ile Phe Ala Pro 145 150 155 160 His Pro Ala Ala Lys Lys Val Ser Gln Arg Ala Ile Thr Leu Leu Asn 165 170 175 Gln Ala Ile Val Ala Ala Gly Gly Pro Glu Asn Leu Leu Val Thr Val 180 185 190 Ala Asn Pro Asp Ile Glu Thr Ala Gln Arg Leu Phe Lys Phe Pro Gly 195 200 205 Ile Gly Leu Leu Val Val Thr Gly Gly Glu Ala Val Val Glu Ala Ala 210 215 220 Arg Lys His Thr Asn Lys Arg Leu Ile Ala Ala Gly Ala Gly Asn Pro 225 230 235 240 Pro Val Val Val Asp Glu Thr Ala Asp Leu Ala Arg Ala Ala Gln Ser 245 250 255 Ile Val Lys Gly Ala Ser Phe Asp Asn Asn Ile Ile Cys Ala Asp Glu 260 265 270 Lys Val Leu Ile Val Val Asp Ser Val Ala Asp Glu Leu Met Arg Leu 275 280 285 Met Glu Gly Gln His Ala Val Lys Leu Thr Ala Glu Gln Ala Gln Gln 290 295 300 Leu Gln Pro Val Leu Leu Lys Asn Ile Asp Glu Arg Gly Lys Gly Thr 305 310 315 320 Val Ser Arg Asp Trp Val Gly Arg Asp Ala Gly Lys Ile Ala Ala Ala 325 330 335 Ile Gly Leu Lys Val Pro Gln Glu Thr Arg Leu Leu Phe Val Glu Thr 340 345 350 Thr Ala Glu His Pro Phe Ala Val Thr Glu Leu Met Met Pro Val Leu 355 360 365 Pro Val Val Arg Val Ala Asn Val Ala Asp Ala Ile Ala Leu Ala Val 370 375 380 Lys Leu Glu Gly Gly Cys His His Thr Ala Ala Met His Ser Arg Asn 385 390 395 400 Ile Glu Asn Met Asn Gln Met Ala Asn Ala Ile Asp Thr Ser Ile Phe 405 410 415 Val Lys Asn Gly Pro Cys Ile Ala Gly Leu Gly Leu Gly Gly Glu Gly 420 425 430 Trp Thr Thr Met Thr Ile Thr Thr Pro Thr Gly Glu Gly Val Thr Ser 435 440 445 Ala Arg Thr Phe Val Arg Leu Arg Arg Cys Val Leu Val Asp Ala Phe 450 455 460 Arg Ile Val 465 140532PRTClostridium tetani 140Met Glu Lys Tyr Asp Lys Asp Leu Tyr Ser Ile Gln Gln Ala Arg Asn 1 5 10 15 Leu Ala Arg Leu Gly Lys Val Ala Ala Asn Lys Ile Ala Asn Tyr Thr 20 25 30 Glu Glu Gln Ile Asp Lys Ile Leu Arg Asn Met Val Arg Val Ala Glu 35 40 45 Glu Asn Ala Val Ser Leu Ala Gln Met Ala Val Glu Glu Thr Gly Phe 50 55 60 Gly Lys Val Glu Asp Lys Thr Tyr Lys Asn His Leu Ala Ala Thr Ile 65 70 75 80 Leu Tyr Asp Ser Ile Lys Asp Met Lys Thr Ile Gly Val Ile Ser Glu 85 90 95 Asp Lys Val Asn Lys Met Ile Glu Ile Ala Glu Pro Val Gly Leu Ile 100 105 110 Met Gly Ile Val Pro Ser Thr Asn Pro Thr Ser Thr Ala Ile Phe Lys 115 120 125 Ser Ile Ile Ala Ile Lys Ser Arg Asn Ala Ile Val Phe Ser Pro His 130 135 140 Pro Ala Ala Ala Lys Cys Thr Ile Arg Ala Val Glu Leu Met Arg Asp 145 150 155 160 Ala Ala Ile Glu Ala Gly Ala Pro Glu Asp Ile Ile Ala Ser Leu Thr 165 170 175 Asn Leu Thr Met Glu Ala Thr Asn Glu Leu Met Lys Asn Glu Asn Val 180 185 190 Ser Leu Ile Ile Ala Thr Gly Gly Pro Gly Met Val Lys Ala Ala Tyr 195 200 205 Ser Ser Gly Lys Pro Ala Ile Gly Val Gly Ala Gly Asn Ser Pro Ala 210 215 220 Tyr Ile Glu Arg Thr Ala Asn Val Glu Lys Ala Ile Arg Asp Ile Ile 225 230 235 240 Ser Ser Lys Ser Phe Asp Tyr Gly Thr Ile Cys Ala Ser Glu Gln Ser 245 250 255 Ile Ile Cys Glu Glu Cys Asn His Asp Ala Val Val Glu Glu Leu Lys 260 265 270 Lys Gln Gly Gly Tyr Phe Met Thr Ala Glu Glu Thr Glu Lys Val Cys 275 280 285 Lys Leu Leu Phe Lys Asn Gly His Thr Met Asn Ala Lys Phe Val Gly 290 295 300 Arg Ser Pro Gln Val Ile Ala Asn Ala Ala Gly Phe Thr Val Ser Glu 305 310 315 320 Asp Ile Lys Val Leu Ile Gly Lys Gln Asn Gly Val Gly Asn Gly Asn 325 330 335 Pro Leu Ser Phe Glu Lys Leu Thr Thr Val Leu Ala Phe Tyr Thr Val 340 345 350 Lys Asp Trp His Glu Ala Cys Glu Leu Ser Ile Glu Leu Leu Gln Asn 355 360 365 Gly Ile Gly His Thr Met Ser Ile His Thr Gln Asn Asp Asp Ile Val 370 375 380 Met Glu Phe Ala Lys Lys Pro Ala Ser Arg Ile Leu Val Asn Thr Gly 385 390 395 400 Gly Ser Gln Gly Gly Thr Gly Ala Ser Thr Gly Leu Lys Pro Ala Phe 405 410 415 Thr Leu Gly Cys Gly Thr Trp Gly Gly Ser Ser Val Ser Glu Asn Val 420 425 430 Thr Pro Glu His Leu Ile Asn Lys Lys Arg Val Ala Tyr Gly Leu Lys 435 440 445 Asp Cys Ala Thr Leu Val Gln Asn Asp Pro Thr Phe Asn Cys Ile Lys 450 455 460 Thr Ala Ser Asn Cys Arg Gly Val Lys Asn Gln Phe Met Asn Met Ser 465 470 475 480 Pro Ala Gln Ile Ala Ala Ala Ala Glu Val Leu Asn Lys Cys Asn Asp 485 490 495 Tyr Ala Lys Asn Thr Gly Cys Ser Asn Glu Ser Lys Glu Lys Asp Ala 500 505 510 Asn Asn Glu Glu Leu Leu Ser Leu Val Asn Gln Ile Val Ala Ala Met 515 520 525 Lys Gly Ala Asn 530 141297PRTBurkholderia thailandensis 141Met Lys Asn Lys Ser Ser Arg Thr Arg Val Ala Ile Leu Gly Ser Gly 1 5 10 15 Ser Ile Gly Leu Asp Leu Met Phe Lys Val Lys Ala Ser Glu His Phe 20 25 30 Asp Leu Lys Phe Val Val Gly Arg His Ala Asn Ser Asp Gly Leu Lys 35 40 45 Leu Ala Arg Ser Cys Asn Val Glu Thr Ser Ser Asp Gly Leu Asp Phe 50 55 60 Leu Lys Glu Asn Glu Asp Ala Tyr Asp Leu Val Phe Asp Ala Thr Ser 65 70 75 80 Ala Ala Ala His Lys Val Asn Asn Gly Phe Phe Ser Gly Ala Gly Lys 85 90 95 Phe Val Ile Asp Leu Thr Pro Ala Lys Leu Gly Arg Leu Cys Val Pro 100 105 110 Cys Ile Asn Leu Asp Asp Ile Gly Ala Glu Gln Asn Val Asn Leu Ile 115 120 125 Thr Cys Gly Gly Gln Ala Ser Leu Pro Leu Ala Tyr Ala Leu Lys Gln 130 135 140 Ala Val Asp Glu Ile Glu Tyr Leu Glu Val Val Ser Ala Ile Ala Ser 145 150 155 160 Arg Ser Ala Gly Ile Ala Thr Arg Glu Asn Ile Asp Glu Tyr Met Thr 165 170 175 Thr Thr Glu Tyr Ala Leu Ala Gln Phe Ser Gly Ala Lys Lys Thr Lys 180 185 190 Ala Ile Leu Asn Ile Asn Pro Ala Glu Pro Gly Val Arg Met Gln Thr 195 200 205 Thr Leu Tyr Ala His Ala Arg Tyr Arg Asp Phe Asp Arg Val Arg Ala 210 215 220 Cys Val Ala Glu Met Val Glu Lys Val Arg Glu Tyr Val Pro Gly Tyr 225 230 235 240 Arg Leu Val Val Glu Pro Ile Glu Ser Gln Gly Arg Ile Thr Ile Ser 245 250 255 Leu Thr Val Arg Gly Arg Gly Asp Tyr Leu Pro Glu Tyr Ala Gly Asn 260 265 270 Leu Asp Ile Ile Asn Cys Ala Ala Leu Ala Val Ala Ser His Arg His 275 280 285 Ala Thr Ala Arg Leu Gly Ala Thr Gln 290 295 142316PRTPseudomonas putida 142Met Thr Arg Lys Val Lys Ala Ala Ile Ile Gly Ser Gly Asn Ile Gly 1 5 10 15 Thr Asp Leu Met Ile Lys Ile Leu Arg His Gly Gln His Ile Glu Met 20 25 30 Gly Ala Met Val Gly Ile Asp Pro Ala Ser Asp Gly Leu Ala Arg Ala 35 40 45 Gln Arg Met Gly Val Ala Ile Thr His Glu Gly Val Glu Gly Leu Thr 50 55 60 Arg Leu Pro Val Phe Asn Glu Ile Asp Val Val Phe Asp Ala Thr Ser 65 70 75 80 Ala Gly Ala His Val Lys Asn Glu Ala Leu Leu Arg Glu Arg Lys Pro 85 90 95 Gly Leu Arg Met Ile Asp Leu Thr Pro Ala Ala Ile Gly Pro Tyr Cys 100 105 110 Ile Pro Val Val Asn Gly Asp Asp His Leu Asp Ala Thr Asn Val Asn 115 120 125 Met Val Thr Cys Gly Gly Gln Ala Thr Ile Pro Met Val Ala Ala Val 130 135 140 Ser Arg Val Ala Lys Val His Tyr Ala Glu Ile Ile Ala Ser Ile Ser 145 150 155 160 Ser Lys Ser Ala Gly Pro Gly Thr Arg Ala Asn Ile Asp Glu Phe Thr 165 170 175 Glu Thr Thr Ser Lys Ala Ile Glu Val Val Gly Gly Ala Ala Lys Gly 180 185 190 Lys Ala Ile Ile Val Leu Asn Pro Ala Glu Pro Pro Leu Met Met Arg 195 200 205 Asp Thr Val Tyr Thr Leu Ser Asp Phe Ala Asp Ile Asp Gln Ile Glu 210 215 220 Glu Ser Val Gln Arg Met Ala Asp Ala Val Gln Ala Tyr Val Pro Gly 225 230 235 240 Tyr Arg Leu Lys Gln Arg Val Gln Phe Asp Arg Ile Glu Ala Asp Cys 245 250 255 Pro Ile Arg Ile Pro Gly Val Gly Asp Arg Met Asn Gly Leu Lys Thr 260 265 270 Ser Ile Phe Leu Glu Val Glu Gly Ala Ala His Tyr Leu Pro Ala Tyr 275 280 285 Ala Gly Asn Leu Asp Ile Met Thr Ser Ala Ala Leu Arg Thr Ala Glu 290

295 300 Lys Leu Ala Glu Arg Leu Leu Ala Ser Leu Val Ala 305 310 315 143539PRTBurkholderia mallei 143Met His Arg Gly Ala Ala Cys Trp His Gly Phe Gly Val Thr Asn Gly 1 5 10 15 Val Ala His Val Ala Arg Arg Ile Thr Asp Thr Asp Met Arg Gly Ala 20 25 30 Thr Met Asn His Ala Asp Met Gln His Leu Asn Ile Glu Phe Pro Tyr 35 40 45 Arg Lys Gln Tyr Gly Asn Phe Ile Gly Gly Glu Trp Val Ala Pro Val 50 55 60 Gly Gly Glu Tyr Phe Asp Asn Val Ser Pro Val Thr Gly Arg Pro Phe 65 70 75 80 Thr Ala Ile Pro Arg Ser Arg Glu Ala Asp Ile Glu Leu Ala Leu Asp 85 90 95 Ala Ala His Ala Ala Lys Ala Gly Trp Ala Ala Lys Gly Ala Ala Glu 100 105 110 Arg Ala Asn Val Leu Leu Arg Ile Ala Asp Arg Met Glu Ala Asn Leu 115 120 125 Thr Arg Leu Ala Val Ala Glu Thr Ile Asp Asn Gly Lys Pro Leu Arg 130 135 140 Glu Thr Thr Ala Ala Asp Val Pro Leu Ala Ile Asp His Phe Arg Tyr 145 150 155 160 Phe Ala Gly Cys Ile Arg Ala Gln Glu Gly Ser Ile Ala Asp Ile Gly 165 170 175 Gly Asp Met Val Ala Tyr His Phe His Glu Pro Leu Gly Val Val Gly 180 185 190 Gln Ile Ile Pro Trp Asn Phe Pro Leu Leu Met Ala Ala Trp Lys Leu 195 200 205 Ala Pro Ala Leu Ala Ala Gly Asn Cys Val Val Leu Lys Pro Ala Glu 210 215 220 Gln Thr Pro Ala Ser Ile Leu Val Phe Ala Glu Leu Ile Gln Asp Leu 225 230 235 240 Leu Pro Pro Gly Val Leu Asn Ile Val Asn Gly Phe Gly Leu Glu Ala 245 250 255 Gly Lys Pro Leu Ala Ser Ser Lys Arg Ile Ala Lys Ile Ala Phe Thr 260 265 270 Gly Glu Thr Ser Thr Gly Arg Leu Ile Met Gln Tyr Ala Ser Glu Asn 275 280 285 Leu Ile Pro Val Thr Leu Glu Leu Gly Gly Lys Ser Pro Asn Ile Phe 290 295 300 Phe Ala Asp Val Met Asp Arg Asp Asp Ser Tyr Phe Asp Lys Ala Leu 305 310 315 320 Glu Gly Phe Ala Met Phe Ala Leu Asn Gln Gly Glu Val Cys Thr Cys 325 330 335 Pro Ser Arg Ala Leu Val Glu Glu Ser Ile Tyr Asp Arg Phe Ile Glu 340 345 350 Arg Ala Leu Lys Arg Val Glu Ala Ile Lys Gln Gly His Pro Leu Asp 355 360 365 Ser Gln Thr Met Ile Gly Ala Gln Ala Ser Ala Glu Gln Leu Glu Lys 370 375 380 Ile Leu Ser Tyr Ile Asp Ile Gly Arg Gly Glu Gly Ala Gln Cys Leu 385 390 395 400 Thr Gly Gly Glu Arg Asn Val Leu Gly Gly Glu Leu Ala Glu Gly Tyr 405 410 415 Tyr Val Lys Pro Thr Val Phe Arg Gly His Asn Lys Met Arg Ile Phe 420 425 430 Gln Glu Glu Ile Phe Gly Pro Val Leu Ala Val Thr Thr Phe Lys Thr 435 440 445 Glu Glu Glu Ala Leu Glu Ile Ala Asn Asp Thr Leu Tyr Gly Leu Gly 450 455 460 Ala Gly Val Trp Thr Arg Asp Gly Asn Arg Ala Tyr Arg Phe Gly Arg 465 470 475 480 Gly Ile Gln Ala Gly Arg Val Trp Thr Asn Cys Tyr His Ala Tyr Pro 485 490 495 Ala His Ala Ala Phe Gly Gly Tyr Lys Gln Ser Gly Ile Gly Arg Glu 500 505 510 Thr His Lys Met Met Leu Asp His Tyr Gln Gln Thr Lys Asn Leu Leu 515 520 525 Val Ser Tyr Ser Glu Lys Pro Leu Gly Phe Phe 530 535 144464PRTSalmonella typhimurium 144Met Asn Thr Ser Glu Leu Glu Thr Leu Ile Arg Thr Ile Leu Ser Glu 1 5 10 15 Gln Leu Thr Thr Pro Ala Gln Thr Pro Val Gln Pro Gln Gly Lys Gly 20 25 30 Ile Phe Gln Ser Val Ser Glu Ala Ile Asp Ala Ala His Gln Ala Phe 35 40 45 Leu Arg Tyr Gln Gln Cys Pro Leu Lys Thr Arg Ser Ala Ile Ile Ser 50 55 60 Ala Met Arg Gln Glu Leu Thr Pro Leu Leu Ala Pro Leu Ala Glu Glu 65 70 75 80 Ser Ala Asn Glu Thr Gly Met Gly Asn Lys Glu Asp Lys Phe Leu Lys 85 90 95 Asn Lys Ala Ala Leu Asp Asn Thr Pro Gly Val Glu Asp Leu Thr Thr 100 105 110 Thr Ala Leu Thr Gly Asp Gly Gly Met Val Leu Phe Glu Tyr Ser Pro 115 120 125 Phe Gly Val Ile Gly Ser Val Ala Pro Ser Thr Asn Pro Thr Glu Thr 130 135 140 Ile Ile Asn Asn Ser Ile Ser Met Leu Ala Ala Gly Asn Ser Ile Tyr 145 150 155 160 Phe Ser Pro His Pro Gly Ala Lys Lys Val Ser Leu Lys Leu Ile Ser 165 170 175 Leu Ile Glu Glu Ile Ala Phe Arg Cys Cys Gly Ile Arg Asn Leu Val 180 185 190 Val Thr Val Ala Glu Pro Thr Phe Glu Ala Thr Gln Gln Met Met Ala 195 200 205 His Pro Arg Ile Ala Val Leu Ala Ile Thr Gly Gly Pro Gly Ile Val 210 215 220 Ala Met Gly Met Lys Ser Gly Lys Lys Val Ile Gly Ala Gly Ala Gly 225 230 235 240 Asn Pro Pro Cys Ile Val Asp Glu Thr Ala Asp Leu Val Lys Ala Ala 245 250 255 Glu Asp Ile Ile Asn Gly Ala Ser Phe Asp Tyr Asn Leu Pro Cys Ile 260 265 270 Ala Glu Lys Ser Leu Ile Val Val Glu Ser Val Ala Glu Arg Leu Val 275 280 285 Gln Gln Met Gln Thr Phe Gly Ala Leu Leu Leu Ser Pro Ala Asp Thr 290 295 300 Asp Lys Leu Arg Ala Val Cys Leu Pro Glu Gly Gln Ala Asn Lys Lys 305 310 315 320 Leu Val Gly Lys Ser Pro Ser Ala Met Leu Glu Ala Ala Gly Ile Ala 325 330 335 Val Pro Ala Lys Ala Pro Arg Leu Leu Ile Ala Leu Val Asn Ala Asp 340 345 350 Asp Pro Trp Val Thr Ser Glu Gln Leu Met Pro Met Leu Pro Val Val 355 360 365 Lys Val Ser Asp Phe Asp Ser Ala Leu Ala Leu Ala Leu Lys Val Glu 370 375 380 Glu Gly Leu His His Thr Ala Ile Met His Ser Gln Asn Val Ser Arg 385 390 395 400 Leu Asn Leu Ala Ala Arg Thr Leu Gln Thr Ser Ile Phe Val Lys Asn 405 410 415 Gly Pro Ser Tyr Ala Gly Ile Gly Val Gly Gly Glu Gly Phe Thr Thr 420 425 430 Phe Thr Ile Ala Thr Pro Thr Gly Glu Gly Thr Thr Ser Ala Arg Thr 435 440 445 Phe Ala Arg Ser Arg Arg Cys Val Leu Thr Asn Gly Phe Ser Ile Arg 450 455 460 145315PRTRhodococcus sp. 145Met Ser Thr Thr Lys Val Ala Val Ile Gly Ser Gly Asn Ile Gly Thr 1 5 10 15 Asp Leu Val Ile Lys Leu Glu Gln Val Ala Lys Asn Val Glu Ile Ala 20 25 30 Val Leu Val Gly Ile Asp Pro Ala Ser Asp Gly Leu Ala Arg Ala Arg 35 40 45 Arg Leu Gly Ile Ser Thr Val Asp Thr Gly Val Gln Gly Leu Ile Glu 50 55 60 His Pro Glu Phe Asp Asp Ile Glu Ile Ile Phe Asp Ser Thr Ser Ala 65 70 75 80 Lys Ala His Leu Thr Asn Ala Glu Ala Leu Arg Pro Tyr Gly Lys His 85 90 95 Leu Ile Asp Leu Thr Pro Ala Ala Ile Gly Pro Tyr Val Val Pro Ala 100 105 110 Val Asn Leu Asp Gln His Leu Gly Ala Pro Asp Val Asn Met Val Thr 115 120 125 Cys Gly Gly Gln Ala Thr Ile Pro Ile Val Ala Ala Ile Ser Lys Val 130 135 140 Thr Asp Val His Tyr Ala Glu Ile Val Ala Ser Ile Ala Ser Lys Ser 145 150 155 160 Ala Gly Pro Gly Thr Arg Ala Asn Ile Asp Glu Phe Thr Glu Thr Thr 165 170 175 Ala Lys Ala Ile Glu Glu Val Gly Gly Ala Ala His Gly Lys Ala Ile 180 185 190 Ile Val Leu Asn Pro Ala Asp Pro Pro Leu Ile Met Arg Asp Thr Val 195 200 205 Leu Ala Leu Val Ser Asn Pro Asp Gln Asp Ala Ile Arg Gln Ser Ile 210 215 220 Thr Asp Met Val Ala Thr Val Ala Ala Tyr Val Pro Gly Tyr Arg Leu 225 230 235 240 Lys Gln Asp Val Gln Phe Thr Glu Leu Gly Gly Ala Asp Thr Val Ala 245 250 255 Thr Leu Thr Gly Gly Ala Asp Ile Gly Ser Pro Val Trp Lys Val Ser 260 265 270 Val Phe Leu Glu Val Glu Gly Ala Ala His Tyr Leu Pro Ala Tyr Ala 275 280 285 Gly Asn Leu Asp Ile Met Thr Ser Ala Ala Leu Gln Val Ala Glu Lys 290 295 300 Leu Ala Glu Arg Thr Ala Leu Glu Ile Ala Arg 305 310 315 146468PRTClostridium beijerinckii 146Met Asn Lys Asp Thr Leu Ile Pro Thr Thr Lys Asp Leu Lys Leu Lys 1 5 10 15 Thr Asn Val Glu Asn Ile Asn Leu Lys Asn Tyr Lys Asp Asn Ser Ser 20 25 30 Cys Phe Gly Val Phe Glu Asn Val Glu Asn Ala Ile Asn Ser Ala Val 35 40 45 His Ala Gln Lys Ile Leu Ser Leu His Tyr Thr Lys Glu Gln Arg Glu 50 55 60 Lys Ile Ile Thr Glu Ile Arg Lys Ala Ala Leu Glu Asn Lys Glu Val 65 70 75 80 Leu Ala Thr Met Ile Leu Glu Glu Thr His Met Gly Arg Tyr Glu Asp 85 90 95 Lys Ile Leu Lys His Glu Leu Val Ala Lys Tyr Thr Pro Gly Thr Glu 100 105 110 Asp Leu Thr Thr Thr Ala Trp Ser Gly Asp Asn Gly Leu Thr Val Val 115 120 125 Glu Met Ser Pro Tyr Gly Val Ile Gly Ala Ile Thr Pro Ser Thr Asn 130 135 140 Pro Thr Glu Thr Val Ile Cys Asn Ser Ile Gly Met Ile Ala Ala Gly 145 150 155 160 Asn Ala Val Val Phe Asn Gly His Pro Gly Ala Lys Lys Cys Val Ala 165 170 175 Phe Ala Ile Glu Met Ile Asn Lys Ala Ile Ile Ser Cys Gly Gly Pro 180 185 190 Glu Asn Leu Val Thr Thr Ile Lys Asn Pro Thr Met Glu Ser Leu Asp 195 200 205 Ala Ile Ile Lys His Pro Leu Ile Lys Leu Leu Cys Gly Thr Gly Gly 210 215 220 Pro Gly Met Val Lys Thr Leu Leu Asn Ser Gly Lys Lys Ala Ile Gly 225 230 235 240 Ala Gly Ala Gly Asn Pro Pro Val Ile Val Asp Asp Thr Ala Asp Ile 245 250 255 Glu Lys Ala Gly Lys Ser Ile Ile Glu Gly Cys Ser Phe Asp Asn Asn 260 265 270 Leu Pro Cys Ile Ala Glu Lys Glu Val Phe Val Phe Glu Asn Val Ala 275 280 285 Asp Asp Leu Ile Ser Asn Met Leu Lys Asn Asn Ala Val Ile Ile Asn 290 295 300 Glu Asp Gln Val Ser Lys Leu Ile Asp Leu Val Leu Gln Lys Asn Asn 305 310 315 320 Glu Thr Gln Glu Tyr Phe Ile Asn Lys Lys Trp Val Gly Lys Asp Ala 325 330 335 Lys Leu Phe Ser Asp Glu Ile Asp Val Glu Ser Pro Ser Asn Ile Lys 340 345 350 Cys Ile Val Cys Glu Val Asn Ala Asn His Pro Phe Val Met Thr Glu 355 360 365 Leu Met Met Pro Ile Leu Pro Ile Val Arg Val Lys Asp Ile Asp Glu 370 375 380 Ala Val Lys Tyr Thr Lys Ile Ala Glu Gln Asn Arg Lys His Ser Ala 385 390 395 400 Tyr Ile Tyr Ser Lys Asn Ile Asp Asn Leu Asn Arg Phe Glu Arg Glu 405 410 415 Ile Asp Thr Thr Ile Phe Val Lys Asn Ala Lys Ser Phe Ala Gly Val 420 425 430 Gly Tyr Glu Ala Glu Gly Phe Thr Thr Phe Thr Ile Ala Gly Ser Thr 435 440 445 Gly Glu Gly Ile Thr Ser Ala Arg Asn Phe Thr Arg Gln Arg Arg Cys 450 455 460 Val Leu Ala Gly 465 147475PRTBacillus thuringiensis 147Met Thr Asn Lys Thr Asp Glu Lys Glu Val Gln Ala Met Val Asn Val 1 5 10 15 Val Ile Lys Asp Glu Asn Asp Val Gln Glu Val Val Asn Thr Leu Val 20 25 30 Glu Asn Gly Lys Glu Ala Leu Lys Ala Leu Glu Ser Tyr Thr Gln Glu 35 40 45 Gln Val Asp His Ile Val His Glu Met Ala Leu Ser Gly Leu Asp Gln 50 55 60 His Met Pro Leu Ala Lys Met Ala Val Glu Glu Thr Gly Arg Gly Val 65 70 75 80 Tyr Glu Asp Lys Cys Thr Lys Asn Ile Phe Ala Thr Glu Tyr Ile Trp 85 90 95 His Ser Ile Lys Lys Asp Lys Thr Val Gly Ile Ile His Glu Asp Pro 100 105 110 His Glu Glu Val Ile Glu Ile Ala Glu Pro Val Gly Val Val Ala Gly 115 120 125 Val Thr Pro Val Thr Asn Pro Thr Ser Thr Thr Met Phe Lys Ala Ile 130 135 140 Ile Ala Met Lys Thr Arg Asn Pro Ile Ile Phe Ala Phe His Pro Ser 145 150 155 160 Ala Gln Gln Cys Ser Val Ala Ala Ala Lys Ile Leu Arg Asp Ala Ala 165 170 175 Ile Arg Ala Gly Ala Pro Glu Asn Cys Ile Gln Trp Ile Glu Lys Pro 180 185 190 Ser Val Glu Ala Thr Lys Arg Leu Met Asn His Glu Gly Val Ala Leu 195 200 205 Val Leu Ala Thr Gly Gly Ala Gly Met Val Lys Ser Ala Tyr Ser Thr 210 215 220 Gly Lys Pro Ala Leu Gly Val Gly Pro Gly Asn Val Pro Cys Tyr Leu 225 230 235 240 Glu Lys Ser Ala His Val Lys Arg Ala Val Asn Asp Leu Ile Leu Ser 245 250 255 Lys Thr Phe Asp Asn Gly Met Ile Cys Ala Ser Glu Gln Ala Ile Ile 260 265 270 Val Asp Lys Glu Ile Tyr Asn Gly Val Lys Lys Glu Met Gln Asp Asn 275 280 285 Asn Cys Tyr Phe Val Thr Glu Glu Glu Arg Ile Lys Leu Glu Lys Leu 290 295 300 Val Ile Asn Glu Asn Thr Cys Ala Val Asn Ser Asp Ile Val Gly Lys 305 310 315 320 Ser Ala His Tyr Ile Ala Ser Leu Val Ser Ile Lys Val Pro Glu Asp 325 330 335 Thr Lys Ile Leu Val Ala Glu Ile Lys Gly Val Gly Ala Glu Tyr Pro 340 345 350 Leu Ser Arg Glu Lys Leu Ser Pro Val Leu Ala Cys Ile Lys Ala Asn 355 360 365 Ser Gln Glu Glu Gly Phe Lys Tyr Cys Glu Glu Met Leu Asn Leu Gly 370 375 380 Gly Leu Gly His Ser Ala Val Ile His Ser Thr Asn Lys Glu Val Gln 385 390 395 400 Lys Gln Phe Gly Leu Arg Met Lys Ala Cys Arg Leu Ile Val Asn Ser 405 410 415 Pro Ser Ala Gln Gly Gly Ile Gly Asp Ile Tyr Asn Ala Phe Ile Pro 420 425 430 Ser Leu Thr Leu Gly Cys Gly Ser Tyr Gly Lys Asn Ser Val Ser Gln 435 440 445 Asn Val Thr Ala Thr His Ile Ile Asn Val Lys Arg Leu Ala Asn Ser 450 455 460 Pro Asp Asn Met Arg Gly Phe Thr Ile Thr Thr 465 470 475 148467PRTunknownunclassified

gamma proteobacterium protein 148Met Ser Glu Ala Gln Ser Pro Ala Gln Glu Val Ala Glu Met Met Ser 1 5 10 15 Arg Ala Arg Ala Ala Gln Ala Gln Ile Ala Asp Tyr Thr Gln Glu Gln 20 25 30 Val Asp Glu Leu Ile Thr Ala Met Val Tyr Ala Val Ala Arg Glu Asp 35 40 45 Arg Ser Glu Glu Ile Ala Arg Phe Thr Val Glu Glu Thr Gln Leu Gly 50 55 60 Asn Tyr Glu Gly Lys Tyr Leu Lys Ile His Arg Lys Thr Arg Ala Thr 65 70 75 80 Leu Met Asp Ile Ile Asp Asp Lys Ser Val Gly Val Ile Glu Glu Leu 85 90 95 Pro Glu Arg Asn Ile Val Lys Ile Ala Lys Pro Val Gly Val Ile Gly 100 105 110 Ala Leu Ser Pro Ser Thr Asn Pro Glu Ala Thr Pro Val Ile Lys Ala 115 120 125 Ile Ser Ala Val Lys Gly Arg Asn Ala Ile Ile Val Ala Pro His Pro 130 135 140 Arg Ala Lys Leu Thr Asn Lys Lys Ile Cys Asp Tyr Met Arg Glu Ala 145 150 155 160 Leu Glu Leu Cys Gly Ala Pro Ala Asp Leu Val Gln Ser Ile Asp Val 165 170 175 Pro Ser Leu Asp Lys Thr Asn Glu Leu Met Ala Gln Cys Asp Arg Val 180 185 190 Leu Ala Thr Gly Gly Glu Ala Met Val Thr Ala Ala Tyr Ser Ser Gly 195 200 205 Thr Pro Ala Leu Gly Val Gly Val Gly Asn Ala Val Ile Thr Val Asp 210 215 220 Asp Thr Ala Asp Leu Asp Glu Ala Ala Glu Lys Ile Arg Ile Ser Lys 225 230 235 240 Thr Leu Asp Leu Ala Ala Ser Cys Ser Ser Asp Asn Ser Val Leu Val 245 250 255 Phe Glu Ser Val Tyr Asn Glu Leu Leu Glu Lys Leu Lys His Glu Gly 260 265 270 Gly Phe Val Ile Glu Gly Asp Asp Lys Ala Lys Leu Gln Ser Val Ile 275 280 285 Trp Glu Asp Asp His Leu Asn Ala Lys Ile Val Ala Gln His Ala Gln 290 295 300 Thr Ile Cys Gly Gln Ala Gly Ile Asp Leu Pro Glu Gly Lys Ser Phe 305 310 315 320 Leu Ile Val Pro Glu Thr Gly Ala Gly Ala Asp His Pro Phe Ser Gly 325 330 335 Glu Lys Leu Thr Val Thr Met Ala Leu Tyr Lys Val Lys Asp Ile Asp 340 345 350 Glu Ala Ile Glu Met Thr Asn Lys Ile Gln Ala Tyr Gln Gly Gln Gly 355 360 365 His Ser Cys Gly Ile Tyr Ser Tyr Asn Asp Asp Asn Val Leu Lys Leu 370 375 380 Ala Asp Ala Thr Arg Thr Ser Arg Val Met Val Asn Gln Pro Gln Ala 385 390 395 400 Ala Ser Asn Ser Gly Asn Leu Trp Asn Gly Met Arg Gln Thr Phe Ser 405 410 415 Leu Gly Cys Gly Ser Trp Gly Gly Asn Ser Ile Asn His Asn Ile Thr 420 425 430 Trp Arg Asp Leu Ile Asn Glu Thr Trp Val Ser Lys Pro Leu Ala Thr 435 440 445 Thr Lys Thr Ile Pro Ser Asp Glu Glu Leu Phe Gly Ala Val Met Ala 450 455 460 Lys Phe Ser 465

Claims

1-31. (canceled)

32. A non-naturally occurring microbial organism, comprising a microbial organism having an adipate thioester pathway comprising at least one exogenous nucleic acid encoding a set of adipate thioester pathway enzymes expressed in a sufficient amount to produce an adipate thioester, wherein said set of adipate thioester pathway enzymes convert a succinate thioester and an acetate thioester to a 3-oxoadipate thioester, a 3-oxoadipate thioester to a 3-hydroxyadipate thioester, a 3-hydroxyadipate thioester to a 5-carboxy-2-pentenoate thioester and a 5-carboxy-2-pentenoate thioester to an adipate thioester.

33. The non-naturally occurring microbial organism of claim 32, wherein said adipate thioester pathway is an adipyl-CoA pathway, said set of adipate thioester pathway enzymes are a set of adipyl-CoA pathway enzymes, said adipyl-CoA pathway enzymes are expressed in a sufficient amount to produce adipyl-CoA, and said set of adipyl-CoA pathway enzymes convert a succinyl-CoA and an acetyl-CoA to a 3-oxoadipyl-CoA, a 3-oxoadipyl-CoA to a 3-hydroxyadipyl-CoA, a 3-hydroxyadipyl-CoA to a 5-carboxy-2-pentenoyl-CoA and a 5-carboxy-2-pentenoyl-CoA to an adipyl-CoA.

34. The non-naturally occurring microbial organism of claim 33, wherein said set adipyl-CoA pathway enzymes comprise a succinyl-CoA:acetyl-CoA acyl transferase, a 3-hydroxyacyl-CoA dehydrogenase, a 3-hydroxyadipyl-CoA dehydratase and a 5-carboxy-2-pentenoyl-CoA reductase.

35. The non-naturally occurring microbial organism of claim 34, further comprising an adipate pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, wherein said adipate pathway enzyme is selected from the group consisting of an adipyl-CoA synthetase, a phosphotransadipylase/adipate kinase, an adipyl-CoA:acetyl-CoA transferase and an adipyl-CoA hydrolase.

36. The non-naturally occurring microbial organism of claim 34, wherein said at least one exogenous nucleic acid encodes a set of adipate pathway enzymes expressed in a sufficient amount to produce adipate, said set of adipate pathway enzymes comprising an adipyl-CoA synthetase, a phosphotransadipylase/adipate kinase, an adipyl-CoA:acetyl-CoA transferase and an adipyl-CoA hydrolase.

37. The non-naturally occurring microbial organism of claim 32, further comprising an adipate pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, wherein said adipate pathway enzyme is selected from the group consisting of a succinyl-CoA:acetyl-CoA acyl transferase, a 3-oxoadipyl-CoA transferase, a 3-oxoadipate reductase, a 3-hydroxyadipate dehydratase, and a 2-enoate reductase.

38. The non-naturally occurring microbial organism of claim 32, wherein said at least one exogenous nucleic acid encodes a set of adipate pathway enzymes expressed in a sufficient amount to produce adipate, said set of adipate pathway enzymes comprising a succinyl-CoA:acetyl-CoA acyl transferase, a 3-oxoadipyl-CoA transferase, a 3-oxoadipate reductase, a 3-hydroxyadipate dehydratase, and a 2-enoate reductase.

39. The non-naturally occurring microbial organism of claim 32, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

40. The non-naturally occurring microbial organism of claim 32, wherein said non-naturally occurring microbial organism is in a substantially anaerobic culture medium.

41. A method for producing an adipate thioester, comprising culturing the non-naturally occurring microorganism of claim 32 under conditions and for a sufficient period of time to produce an adipate thioester.

42. The method for producing an adipate thioester of claim 41, wherein said adipate thioester is adipyl-CoA.

43. A method for producing adipate, comprising producing an adipate thioester according to the method of claim 41, wherein the non-naturally occurring microorganism further comprises an adipate pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, wherein said adipate pathway enzyme is selected from the group consisting of an adipyl-CoA synthetase, a phosphotransadipylase/adipate kinase, an adipyl-CoA:acetyl-CoA transferase and an adipyl-CoA hydrolase, and culturing the non-naturally occurring microorganism under conditions and for a sufficient period of time to produce adipate.

44. The method of claim 41, wherein said non-naturally occurring microbial organism is in a substantially anaerobic culture medium.

45. The method of claim 41, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

46. A method for producing adipyl-CoA, comprising culturing a host microbial organism in which at least one exogenous nucleic acid is introduced under conditions and for a sufficient period of time to produce adipyl-CoA, wherein said host microbial organism comprises at least one exogenous nucleic acid encoding a set of adipyl-CoA pathway enzymes that are expressed in a sufficient amount to produce adipyl-CoA, wherein said set of adipyl-CoA pathway enzymes convert succinyl-CoA and acetyl-CoA to 3-oxoadipyl-CoA, 3-oxoadipyl-CoA to 3-hydroxyadipyl-CoA, 3-hydroxyadipyl-CoA to 5-carboxy-2-pentenoyl-CoA and 5-carboxy-2-pentenoyl-CoA to adipyl-CoA.

47. The method of claim 46, wherein said host microbial organism is in a substantially anaerobic culture medium.

48. The method of claim 46, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

49. The method of claim 46, wherein said set of adipyl-CoA pathway enzymes comprise a succinyl-CoA:acetyl-CoA acyl transferase, a 3-hydroxyacyl-CoA dehydrogenase, a 3-hydroxyadipyl-CoA dehydratase and a 5-carboxy-2-pentenoyl-CoA reductase.

50. A method for producing adipate, comprising culturing a host microbial organism in which at least one exogenous nucleic acid is introduced under conditions and for a sufficient period of time to produce adipate, wherein said host microbial organism comprises at least one exogenous nucleic acid encoding a set of adipyl-CoA pathway enzymes that are expressed in a sufficient amount to produce adipyl-CoA, wherein said set of adipyl-CoA pathway enzymes convert succinyl-CoA and acetyl-CoA to 3-oxoadipyl-CoA, 3-oxoadipyl-CoA to 3-hydroxyadipyl-CoA, 3-hydroxyadipyl-CoA to 5-carboxy-2-pentenoyl-CoA and 5-carboxy-2-pentenoyl-CoA to adipyl-CoA, and wherein said host microbial organism comprises at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, wherein said adipate pathway enzyme is selected from the group consisting of an adipyl-CoA synthetase, a phosphotransadipylase/adipate kinase, an adipyl-CoA:acetyl-CoA transferase and an adipyl-CoA hydrolase.

51. The method of claim 50, wherein said host microbial organism is in a substantially anaerobic culture medium.

52. The method of claim 50, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

53. The method of claim 50, wherein said at least one exogenous nucleic acid encoding an adipate pathway enzyme encodes a set of adipate pathway enzymes that are expressed in a sufficient amount to produce adipate, said set of adipate pathway enzymes comprising an adipyl-CoA synthetase, a phosphotransadipylase/adipate kinase, an adipyl-CoA:acetyl-CoA transferase and an adipyl-CoA hydrolase.

54. A method for producing adipate, comprising culturing a host microbial organism in which at least one exogenous nucleic acid is introduced under conditions and for a sufficient period of time to produce adipate, wherein said host microbial organism comprises at least one exogenous nucleic acid encoding a set of adipyl-CoA pathway enzymes that are expressed in a sufficient amount to produce adipyl-CoA, wherein said set of adipyl-CoA pathway enzymes convert succinyl-CoA and acetyl-CoA to 3-oxoadipyl-CoA, 3-oxoadipyl-CoA to 3-hydroxyadipyl-CoA, 3-hydroxyadipyl-CoA to 5-carboxy-2-pentenoyl-CoA and 5-carboxy-2-pentenoyl-CoA to adipyl-CoA, and wherein said host microbial organism comprises at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, wherein said adipate pathway enzyme is selected from the group consisting of a succinyl-CoA:acetyl-CoA acyl transferase, a 3-oxoadipyl-CoA transferase, a 3-oxoadipate reductase, a 3-hydroxyadipate dehydratase, and a 2-enoate reductase.

55. The method of claim 54, wherein said host microbial organism is in a substantially anaerobic culture medium.

56. The method of claim 54, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

57. The method of claim 54, wherein said at least one exogenous nucleic acid encoding an adipate pathway enzyme encodes a set of adipate pathway enzymes that are expressed in a sufficient amount to produce adipate, said set of adipate pathway enzymes comprising a succinyl-CoA:acetyl-CoA acyl transferase, a 3-oxoadipyl-CoA transferase, a 3-oxoadipate reductase, a 3-hydroxyadipate dehydratase, and a 2-enoate reductase.

58. A non-naturally occurring microbial organism, comprising a microbial organism having an adipate pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, said adipate pathway comprising 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

59. The non-naturally occurring microbial organism of claim 58, wherein said microbial organism comprises two exogenous nucleic acids each encoding an adipate pathway enzyme.

60. The non-naturally occurring microbial organism of claim 58, wherein said microbial organism comprises three exogenous nucleic acids each encoding an adipate pathway enzyme.

61. The non-naturally occurring microbial organism of claim 58, wherein said microbial organism comprises four exogenous nucleic acids each encoding an adipate pathway enzyme.

62. The non-naturally occurring microbial organism of claim 58, wherein said microbial organism comprises five exogenous nucleic acids each encoding an adipate pathway enzyme.

63. The non-naturally occurring microbial organism of claim 62, wherein said five exogenous nucleic acids encode 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA: acetyl-CoA transferase or adipyl-CoA hydrolase.

64. The non-naturally occurring microbial organism of claim 58, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

65. The non-naturally occurring microbial organism of claim 58, wherein said non-naturally occurring microbial organism is in a substantially anaerobic culture medium.

66. A method for producing adipate, comprising culturing a non-naturally occurring microbial organism having an adipate pathway, said pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, under conditions and for a sufficient period of time to produce adipate, said adipate pathway comprising 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

67. The method of claim 66, wherein said non-naturally occurring microbial organism is in a substantially anaerobic culture medium.

68. The method of claim 66, wherein said microbial organism comprises two exogenous nucleic acids each encoding an adipate pathway enzyme.

69. The method of claim 66, wherein said microbial organism comprises three exogenous nucleic acids each encoding an adipate pathway enzyme.

70. The method of claim 66, wherein said microbial organism comprises four exogenous nucleic acids each encoding an adipate pathway enzyme.

71. The method of claim 66, wherein said microbial organism comprises five exogenous nucleic acids each encoding an adipate pathway enzyme.

72. The method of claim 71, wherein said five exogenous nucleic acids encode 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

73. The method of claim 66, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

74. A host microbial organism in which at least one exogenous nucleic acid is introduced, wherein said host microbial organism has, an adipate pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, said adipate pathway comprising 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

75. The host microbial organism of claim 74, wherein said host microbial organism comprises two exogenous nucleic acids each encoding an adipate pathway enzyme.

76. The host microbial organism of claim 74, wherein said host microbial organism comprises three exogenous nucleic acids each encoding an adipate pathway enzyme.

77. The host microbial organism of claim 74, wherein said host microbial organism comprises four exogenous nucleic acids each encoding an adipate pathway enzyme.

78. The host microbial organism of claim 74, wherein said host microbial organism comprises five exogenous nucleic acids each encoding an adipate pathway enzyme.

79. The host microbial organism of claim 78, wherein said five exogenous nucleic acids encode 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

80. The host microbial organism of claim 74, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

81. The host microbial organism of claim 74, wherein said host microbial organism is in a substantially anaerobic culture medium.

82. A method for producing adipate, comprising culturing a host microbial organism in which at least one exogenous nucleic acid is introduced, wherein said culturing is under conditions and for a sufficient period of time to produce adipate, wherein said host microbial organism has an adipate pathway, said adipate pathway comprising at least one exogenous nucleic acid encoding an adipate pathway enzyme expressed in a sufficient amount to produce adipate, said adipate pathway comprising 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

83. The method of claim 82, wherein said host microbial organism is in a substantially anaerobic culture medium.

84. The method of claim 82, wherein said host microbial organism comprises two exogenous nucleic acids each encoding an adipate pathway enzyme.

85. The method of claim 82, wherein said host microbial organism comprises three exogenous nucleic acids each encoding an adipate pathway enzyme.

86. The method of claim 82, wherein said host microbial organism comprises four exogenous nucleic acids each encoding an adipate pathway enzyme.

87. The method of claim 82, wherein said host microbial organism comprises five exogenous nucleic acids each encoding an adipate pathway enzyme.

88. The method of claim 87, wherein said five exogenous nucleic acids encode 2-hydroxyadipate dehydrogenase; 2-hydroxyadipyl-CoA synthetase, phosphotranshydroxyadipylase/2-hydroxyadipate kinase or 2-hydroxyadipyl-CoA:acetyl-CoA transferase; 2-hydroxyadipyl-CoA dehydratase; 5-carboxy-2-pentenoyl-CoA reductase; and adipyl-CoA synthetase, phosphotransadipylase/adipate kinase, adipyl-CoA:acetyl-CoA transferase or adipyl-CoA hydrolase.

89. The method of claim 82, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

90. A recombinant microorganism comprising at least one exogenous nucleic acid encoding enzymes that catalyze reactions that result in the production of an adipate thioester, wherein said enzymes convert a succinate thioester and an acetate thioester to a 3-oxoadipate thioester, a 3-oxoadipate thioester to a 3-hydroxyadipate thioester, a 3-hydroxyadipate thioester to a 5-carboxy-2-pentenoate thioester and a 5-carboxy-2-pentenoate thioester to an adipate thioester.

91. The microorganism of claim 90, wherein said adipate thioester is adipyl-CoA and said enzymes convert succinyl-CoA and acetyl-CoA to 3-oxoadipyl-CoA, 3-oxoadipyl-CoA to 3-hydroxyadipyl-CoA, 3-hydroxyadipyl-CoA to 5-carboxy-2-pentenoyl-CoA and 5-carboxy-2-pentenoyl-CoA to adipyl-CoA.

92. The microorganism of claim 91, wherein said enzymes comprise a succinyl-CoA:acetyl-CoA acyl transferase, a 3-hydroxyacyl-CoA dehydrogenase, a 3-hydroxyadipyl-CoA dehydratase and a 5-carboxy-2-pentenoyl-CoA reductase.

93. The microorganism of claim 92, wherein said microorganism further comprises at least one exogenous nucleic acid encoding at least one enzyme that catalyzes the conversion of adipyl CoA to adipate.

94. The microorganism of claim 90, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.

95. The microorganism of claim 90, wherein said microorganism is in oxygen limited or anaerobic conditions.

96. A method for producing an adipate thioester, comprising incubating the microorganism of claim 90 under conditions such that said adipate thioester is produced.

97. The method of claim 96, wherein said adipate thioester is adipyl-CoA.

98. A method for producing adipate, comprising incubating the microorganism of claim 93 under conditions such that adipate is produced.

99. The method of claim 96, wherein said microorganism is in oxygen limited or anaerobic conditions.

100. The method of claim 96, wherein said at least one exogenous nucleic acid is a heterologous nucleic acid.