U.S. patent application number 13/551847 was filed with the patent office on 2013-07-18 for dna encoding a plant lipase, transgenic plants and a method for controlling senescence in plants.
The applicant listed for this patent is Yuwen Hong, Katalin Hudak, John E. THOMPSON, Tzann-Wei Wang. Invention is credited to Yuwen Hong, Katalin Hudak, John E. THOMPSON, Tzann-Wei Wang.
Application Number | 20130184449 13/551847 |
Document ID | / |
Family ID | 22947104 |
Filed Date | 2013-07-18 |
United States Patent
Application |
20130184449 |
Kind Code |
A1 |
THOMPSON; John E. ; et
al. |
July 18, 2013 |
DNA Encoding a Plant Lipase, Transgenic Plants and a Method for
Controlling Senescence in Plants
Abstract
Regulation of expression of senescence in plants is achieved by
integration of a gene or gene fragment encoding senescence-induced
lipase into the plant genome in antisense orientation. The
carnation and Arabidopsis genes encoding senescence-induced lipase
are identified and the nucleotide sequences are used to modify
senescence in transgenic plants.
Inventors: |
THOMPSON; John E.;
(Waterloo, CA) ; Wang; Tzann-Wei; (Waterloo,
CA) ; Hudak; Katalin; (East Brunswick, NJ) ;
Hong; Yuwen; (Waterloo, CA) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
THOMPSON; John E.
Wang; Tzann-Wei
Hudak; Katalin
Hong; Yuwen |
Waterloo
Waterloo
East Brunswick
Waterloo |
NJ |
CA
CA
US
CA |
|
|
Family ID: |
22947104 |
Appl. No.: |
13/551847 |
Filed: |
July 18, 2012 |
Related U.S. Patent Documents
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Application
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Filing Date |
Patent Number |
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13079563 |
Apr 4, 2011 |
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13551847 |
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11870229 |
Oct 10, 2007 |
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13079563 |
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11486250 |
Jul 14, 2006 |
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11870229 |
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10674540 |
Oct 1, 2003 |
7087419 |
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11486250 |
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09597774 |
Jun 19, 2000 |
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10674540 |
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09250280 |
Feb 16, 1999 |
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09597774 |
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09105812 |
Jun 26, 1998 |
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09250280 |
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Current U.S.
Class: |
536/23.2 |
Current CPC
Class: |
C12N 15/8273 20130101;
C12N 9/20 20130101; C12N 9/18 20130101; C12Q 2600/158 20130101;
C12N 15/8266 20130101; C12Q 1/6895 20130101; C40B 30/04 20130101;
C40B 40/08 20130101; C12N 15/8249 20130101 |
Class at
Publication: |
536/23.2 |
International
Class: |
C12N 15/82 20060101
C12N015/82 |
Claims
1: An isolated DNA molecule encoding senescence-induced lipase,
wherein the DNA molecule hybridizes under low stringency conditions
with SEQ ID NO: 1, SEQ ID NO: 18 or both, or a functional
derivative of the isolated DNA molecule which hybridizes with SEQ
ID NO: 1, SEQ ID NO: 18 or both.
2-53. (canceled)
Description
[0001] This application is a continuation-in-part of application
Ser. No. 09/597,774, which is a continuation-in-part application of
application Ser. No. 09/250,280 which is a continuation-in-part
application of application Ser. No. 09/105,812, filed Jun. 26,
1998, and incorporated herein in its entirety by reference
thereto.
FIELD OF THE INVENTION
[0002] The present invention relates to, polynucleotides which
encode plant polypeptides and which exhibit senescence-induced
expression, transgenic plants containing the polynucleotides in
antisense orientation and methods for controlling senescence in
plants. More particularly, the present invention relates to plant
lipase genes whose expression is induced by the onset of senescence
and the use of the lipase gene to control senescence in plants.
DESCRIPTION OF THE PRIOR ART
[0003] Senescence is the terminal phase of biological development
in the life of a plant. It presages death and occurs at various
levels of biological organization including the whole plant,
organs, flowers and fruit, tissues and individual cells.
[0004] Cell membrane deterioration is an early and fundamental
feature of senescence. Metabolism of lipids, in particular membrane
lipids, is one of several biochemical manifestations of cellular
senescence. Rose petals, for example, sustain an increase in acyl
hydrolase activity as senescence progresses that is accompanied by
a loss of membrane function (Borochov, et al., Plant Physiol.,
1982, 69, 296-299). Cell membrane deterioration is an early and
characteristic feature of senescence engendering increased
permeability, loss of ionic gradients and decreased function of key
membrane proteins such as ion pumps (Brown, et al., Plant Physiol.:
A Treatise, Vol. X. Academic Press, 1991, pp. 227-275). Much of
this decline in membrane structural and functional integrity can be
attributed to lipase-mediated phospholipid metabolism. Loss of
lipid phosphate has been demonstrated for senescing flower petals,
leaves, cotyledons and ripening fruit (Thompson, J. E., Senescence
and Aging in Plants, Academic Press, San Diego, 1988, pp. 51-83),
and this appears to give rise to major alterations in the molecular
organization of the membrane bilayer with advancing senescence that
lead to impairment of cell function. In particular, studies with a
number of senescing plant tissues have provided evidence for lipid
phase separations in membranes that appear to be attributable to an
accumulation of lipid metabolites in the membrane bilayer (McKersie
and Thompson, 1979, Biochim. Biophys. Acta, 508: 197-212; Chia, et
al., 1981, Plant Physiol., 67:415-420). There is growing evidence
that much of the metabolism of lipids in senescing tissue is
achieved through senescence-specific changes in gene expression
(Buchanan-Wollaston, V., J. Exp. Bot., 1997, 307:181-199).
[0005] The onset of senescence can be induced by different factors
both internal and external. For example, ethylene plays a role in
many plants in a variety of plant processes such as seed
germination, seedling development, fruit ripening and flower
senescence. Ethylene production in plants can also be associated
with trauma induced by mechanical wounding, chemicals, stress (such
as produced by temperature and water amount variations), and by
disease. Ethylene has been implicated in the regulation of leaf
senescence in many plants, but evidence obtained with transgenic
plants and ethylene response mutants has indicated that, although
ethylene has an effect on senescence, it is not an essential
regulator of the process. In many plants ethylene seems to have no
role in fruit ripening or senescence. For example in the ripening
of fruits of non-climacteric plants such as strawberry, in
senescence of some flowers such as day lilies and in leaf
senescence in some plants, such as Arabidopsis, and in particular,
in the monocots there is no requirement for ethylene signaling
(Smart, C. M., 1994, New Phytology, 126:419-448; Valpuesta, et al.,
1995, Plant Mol. Biol., 28:575-582).
[0006] External factors that induce premature initiation of
senescence include environmental stresses such as temperature,
drought, poor light or nutrient supply, as well as pathogen attack.
As in the case of natural (age-related) senescence, environmental
stress-induced senescence is characterized by a loss of cellular
membrane integrity. Specifically, exposure to environmental stress
induces electrolyte leakage reflecting membrane damage (Sharom, et
al., 1994, Plant Physiol., 105:305-308; Wright and Simon, 1973, J.
Exp. Botany, 24:400-411; Wright, M., 1974, Planta, 120:63-69; and
Eze et al., 1986, Physiologia Plantarum, 68:323-328), a decline in
membrane phospholipid levels (Wright, M., 1974, Planta, 120:63-69)
and lipid phase transitions (Sharom, et al., 1994, Plant Physiol.,
105:305-308), all of which can be attributed to the action of
lipase. Plant tissues exposed to environmental stress also produce
ethylene, commonly known as stress ethylene (Buchanan-Wollaston,
V., 1997, J. Exp. Botany, 48:181-199; Wright, M., 1974, Planta,
120:63-69). As noted above, ethylene is known to cause senescence
in some plants.
[0007] Membrane deterioration leading to leakage is also a seminal
feature of seed aging, and there is evidence that this too reflects
deesterification of fatty acids from membrane phospholipids
(McKersie, B. D., Senarata, T., Walker, M. A., Kendall, E. J. and
Hetherington, P. R. In: Senescence and Aging in Plants, Ed. L. D.
Nooden and A. C. Leoopold, academic Press, 1988. PP 441-464).
[0008] Presently, there is no widely applicable method for
controlling onset of senescence caused by either internal or
external, e.g., environmental stress, factors. At present, the
technology for controlling senescence and increasing the shelf-life
of fresh, perishable plant produce, such as fruits, flowers and
vegetables relies primarily upon reducing ethylene biosynthesis.
For example, U.S. Pat. No. 5,824,875 discloses transgenic geranium
plants which exhibit prolonged shelf-life due to reduction in
levels of ethylene resulting from the expression of one of three
1-amino-cyclopropane-1-carboxylate (ACC) synthase genes in
antisense orientation. Consequently, this technology is applicable
to only a limited range of plants that are ethylene-sensitive.
[0009] The shelf-life of some fruits is also extended by reducing
ethylene biosynthesis, which causes ripening to occur more slowly.
Since senescence of these fruits is induced after ripening, the
effect of reduced ethylene biosynthesis on shelf-life is indirect.
Another approach used to delay fruit ripening is by altering
cellular levels of polygalacturonase, a cell-wall softening enzyme
that is synthesized during the early stages of ripening. This
approach is similar to controlling ethylene biosynthesis in that
it, too, only indirectly affects senescence and again, is only
applicable to a narrow range of plants.
[0010] Thus, there is a need for a method of controlling senescence
in plants which is applicable to a wide variety of plants. It is
therefore of interest to develop senescence modulating technologies
that are applicable to all types of plants, regardless of ethylene
sensitivity.
SUMMARY OF THE INVENTION
[0011] This invention is based on the discovery and cloning of a
full length cDNA clone encoding a carnation senescence-induced
lipase and a full-length cDNA clone encoding Arabidopsis thaliana
senescence-induced lipase. The nucleotide sequences and
corresponding amino acid sequences for the senescence-induced
lipase genes are disclosed herein. The nucleotide sequence of the
carnation senescence-induced lipase gene has been successfully used
as a heterologous probe to detect corresponding genes or RNA
transcripts in several plants that are similarly regulated.
[0012] The invention provides a method for genetic modification of
plants to control the onset of senescence, either age-related
senescence or environmental stress-induced senescence. The
senescence-induced lipase nucleotide sequences of the invention,
fragments thereof, or combinations of such fragments, are
introduced into a plant cell in reverse orientation to inhibit
expression of the endogenous senescence-induced lipase gene,
thereby reducing the level of endogenous senescence-induced lipase
and altering senescence in the transformed plant.
[0013] Using the methods of the invention, transgenic plants are
generated and monitored for growth and development. Plants or
detached parts of plants (e.g., cuttings, flowers, vegetables,
fruits, seeds or leaves) exhibiting prolonged life or shelf life
with respect to plant growth, flowering, reduced fruit spoilage,
reduced seed aging and/or reduced yellowing of leaves due to
reduction in the level of senescence-induced lipase are selected as
desired products having improved properties including reduced leaf
yellowing, reduced petal abscission, reduced fruit spoilage during
shipping and storage. These superior plants are propagated.
Similarly, plants exhibiting increased resistance to environmental
stress, e.g., decreased susceptibility to low temperature
(chilling), drought, infection, etc., are selected as superior
products.
[0014] In one aspect, the present invention is directed to an
isolated DNA molecule encoding senescence-induced lipase, wherein
the DNA molecule hybridizes with SEQ ID NO:1, or a functional
derivative of the isolated DNA molecule which hybridizes with SEQ
ID NO:1. In one embodiment of the invention, the isolated DNA
molecule has the nucleotide sequence of SEQ ID NO:1, i.e., 100%
complementarity (sequence identity) to SEQ ID NO:1. In another
embodiment of this aspect of the invention, the isolated DNA
molecule contains the nucleotide sequence of SEQ ID NO:4.
[0015] The invention is also directed to an isolated DNA molecule
encoding senescence-induced lipase, wherein the DNA molecule
hybridizes with SEQ ID NO:18, or a functional derivative of the
isolated DNA molecule which hybridizes with SEQ ID NO:18. In one
embodiment of this aspect of the invention, the isolated DNA
molecule has the nucleotide sequence of SEQ ID NO:18, i.e., 100%
complementarity (sequence identity) to SEQ ID NO:18. In another
embodiment of this aspect of the invention, the isolated DNA
molecule contains the nucleotide sequence of SEQ ID NO:19.
[0016] In another embodiment of the invention, there is provided an
isolated protein encoded by a DNA molecule as described herein
above, or a functional derivative thereof. A preferred protein has
the amino acid sequence of SEQ ID NO:2, or is a functional
derivative thereof.
[0017] Also provided herein is an antisense oligonucleotide or
polynucleotide encoding an RNA molecule which is complementary to
at least a portion of an RNA transcript of the DNA molecule
described hereinabove, wherein the RNA molecule hybridizes with the
RNA transcript such that expression of endogenous
senescence-induced lipase is altered. The antisense oligonucleotide
or polynucleotide can be full length or preferably has about six to
about 100 nucleotides.
[0018] The antisense oligonucleotide or polynucleotide is
substantially complementary to a corresponding portion of one
strand of a DNA molecule encoding senescence-induced lipase,
wherein the DNA molecule encoding senescence-induced lipase
hybridizes with SEQ ID NO:1, SEQ ID NO:18 or both, or is
substantially complementary to a corresponding portion of an RNA
sequence encoded by the DNA molecule encoding senescence-induced
lipase. In one embodiment of the invention, the antisense
oligonucleotide or polynucleotide is substantially complementary to
a corresponding portion of one strand of the nucleotide sequence
SEQ ID NO:1, SEQ ID NO:18 or both or the RNA transcript encoded by
SEQ ID NO:1. In another embodiment, the antisense oligonucleotide
is substantially complementary to a corresponding portion of about
100 to about 200 nucleotides of the 5' non-coding portion or 3'-end
portion of one strand of a DNA molecule encoding senescence-induced
lipase, wherein the DNA molecule hybridizes with SEQ ID NO:1, SEQ
ID NO:18 or both. In another embodiment, the antisense oligo- or
polynucleotide is substantially complementary to a corresponding
portion of the open reading frame of one strand of the nucleotide
sequence SEQ ID NO:4 or the RNA transcript encoded by SEQ ID
NO:4.
[0019] The invention is further directed to a vector for
transformation of plant cells, comprising
[0020] (a) antisense nucleotide sequences substantially
complementary to (1) a corresponding portion of one strand of a DNA
molecule encoding senescence-induced lipase, wherein the DNA
molecule encoding senescence-induced lipase hybridizes with SEQ ID
NO:1, SEQ ID NO:18 or both or (2) a corresponding portion of an RNA
sequence encoded by the DNA molecule encoding senescence-induced
lipase; and
[0021] (b) regulatory sequences operatively linked to the antisense
nucleotide sequences such that the antisense nucleotide sequences
are expressed in a plant cell into which it is transformed.
[0022] The regulatory sequences include a promoter functional in
the transformed plant cell, which promoter may be inducible or
constitutive. Optionally, the regulatory sequences include a
polyadenylation signal.
[0023] The invention also provides a plant cell transformed with
the vector as described above, a plantlet or mature plant generated
from such a cell, or a plant part of such a plantlet or plant.
[0024] The present method is further directed to a method of
producing a plant having a reduced level of senescence-induced
lipase compared to an unmodified plant, comprising:
[0025] (1) transforming a plant with a vector as described
above;
[0026] (2) allowing the plant to grow to at least a plantlet
stage;
[0027] (3) assaying the transformed plant or plantlet for altered
senescence-induced lipase activity and/or altered senescence and/or
altered environmental stress-induced senescence and/or
ethylene-induced senescence; and
[0028] (4) selecting and growing a plant having altered
senescence-induced lipase activity and/or altered senescence and/or
altered environmental stressed-induced senescence or
ethylene-induced senescence compared to an nom-transformed
plant.
[0029] A plant produced as above, or progeny, hybrids, clones or
plant parts preferably exhibit reduced senescence-induced lipase
expression and delayed senescence and/or delayed stress-induced
senescence or ethylene-induced senescence.
[0030] This invention is further directed to a method of inhibiting
expression of endogenous senescence-induced lipase in a plant cell,
said method comprising:
[0031] (1) integrating into the genome of a plant a vector
comprising [0032] (A) antisense nucleotide sequences complementary
to (i) a corresponding portion of one strand of a DNA molecule
encoding endogenous senescence-induced lipase, wherein the DNA
molecule encoding the endogenous senescence-induced lipase
hybridizes with SEQ ID NO:1, SEQ ID NO:18 or both, or (ii) a
corresponding portion of an RNA sequence encoded by the endogenous
senescence-induced lipase gene; and [0033] (B) regulatory sequences
operatively linked to the antisense nucleotide sequences such that
the antisense nucleotide sequences are expressed; and
[0034] (2) growing said plant, whereby said antisense nucleotide
sequences are transcribed and the transcript binds to said
endogenous RNA whereby expression of said senescence-induced lipase
gene is inhibited.
BRIEF DESCRIPTION OF THE DRAWINGS
[0035] FIG. 1 depicts the derived amino acid sequence (SEQ ID NO:2)
encoded by the senescence-induced lipase cDNA clone (SEQ ID NO:1)
obtained from a carnation flower cDNA library. Consensus motifs
within the amino acid sequence are as follows: single underline,
amidation site; dotted underline, protein kinase C phosphorylation
site; double underline, N-myristoylation site; box border, cAMP
phosphorylation site; shadow box, casein kinase II phosphorylation
site; cross-hatched box, consensus sequence of lipase family; and
dotted box, N-glycosylation site.
[0036] FIG. 2 depicts the derived full length carnation petal
senescence-induced lipase amino acid sequence (SEQ ID NO:2) in
alignment with partial sequences of lipase-like proteins. Carlip,
full length sequence of carnation petal senescence-induced lipase
(SEQ ID NO:11); arlip, partial sequence of lipase-like protein from
Arabidopsis thaliana (Gen Bank Accession No. AL021710) (SEQ ID
NO:12); ipolip, partial sequence of a lipase-like sequence from
Ipomea (Gen Bank Accession No. U55867) (SEQ ID NO:13); arlipi,
partial sequence of lipase-like protein from Arabidopsis thaliana
(Gen Bank Accession No. U93215) (SEQ ID NO:14). Identical amino
acids among three or four of the sequences are boxed.
[0037] FIG. 3 shows a Western blot analysis of the fusion protein
expression product obtained from carnation lipase cDNA expressed in
E. coli. The Western blot was probed with antibodies to the
senescence-induced lipase protein. Lane 1, maltose binding protein;
lane 2, fusion protein consisting of carnation lipase fused through
a proteolytic (Factor Xa) cleavage site to maltose binding protein
cDNA; lane 3, fusion protein partially cleaved with Factor Xa into
free lipase protein (50.2 kDa) and free maltose-binding
protein.
[0038] FIG. 4 is a Northern blot analysis of RNA isolated from
carnation flower petals at different stages of development. FIG. 4A
is the ethidium bromide stained gel of total RNA. Each lane
contained 10 .mu.g RNA. FIG. 4B is an autoradiograph of the
Northern blot probed with .sup.32P-dCTP-labelled full length
carnation senescence-induced lipase cDNA.
[0039] FIG. 5 is an in situ demonstration of lipolytic acyl
hydrolase, i.e., lipase activity of the protein product obtained by
over expression of the carnation senescence-induced lipase cDNA in
E. coli. mal, E. coli cells containing maltose binding protein
alone in a basal salt medium; mLip, E. coli cells containing the
fusion protein consisting of the carnation senescence-induced
lipase fused with maltose binding protein in basal salt medium; 40
mal/40 mLip, E. coli cells containing maltose binding protein alone
[mal] or the lipase-maltose binding protein fusion product [mLip]
in basal salt medium supplemented with Tween 40; 60 mal/60 mLip, E.
coli cells containing maltose binding protein alone [mal] or the
lipase-maltose binding protein fusion product [mLip] in basal salt
medium supplemented with Tween 60.
[0040] FIG. 6A illustrates a restriction enzyme map of the open
reading frame of the carnation senescence-induced lipase. The
numbers refer to nucleotides in the open reading frame.
[0041] FIG. 6B is a Southern blot analysis of carnation genomic DNA
digested with various restriction enzymes and probed with carnation
senescence-induced lipase cDNA.
[0042] FIG. 7 is the nucleotide sequence of the carnation
senescence-induced lipase cDNA clone (SEQ ID NO:1). Solid
underlining, non-coding sequence of the senescence-induced lipase
cDNA; non-underlined sequenced is the open reading frame.
[0043] FIG. 8 is the amino acid sequence of the carnation
senescence-induced lipase cDNA (SEQ ID NO:2).
[0044] FIG. 9A is a Northern blot analysis showing the expression
of the carnation lipase in stage II petals that have been exposed
to 0.5 ppm ethylene for 15 hours. FIG. 9A is an ethidium bromide
stained gel showing that each of the lanes was loaded with a
constant amount of carnation RNA (petals: lanes 1 and 2; leaves:
lanes 3 and 4; +, ethylene treated; -, untreated). FIG. 9B is an
autoradiogram of a Northern blot of the gel in FIG. 9A probed with
labelled full length carnation petal senescence-induced lipase
cDNA.
[0045] FIG. 10 is a partial nucleotide sequence of tomato leaf
genomic senescence-induced lipase (SEQ ID NO:6) and the
corresponding deduced amino acid sequence (SEQ ID NO:17). The
conserved lipase consensus motif is shaded; the sequences of the
primers used to generate the genomic fragment are each
underlined.
[0046] FIG. 11 is a bar graph showing the effects of chilling on
membrane leakiness. Tomato plants were chilled at 8.degree. for 48
hours and then rewarmed to room temperature. Diffusate leakage
(.mu.Mhos) from leaf disks was measured for control plants, which
had not been chilled, and for chilled plants for 6 and 24 hour
periods.
[0047] FIG. 12 is a Northern blot analysis of tomato leaf RNA
isolated from plants that had been chilled at 8.degree. C. for 48
hours and rewarmed to ambient temperature for 24 hours. FIG. 12A is
the ethidium bromide stained gel of total leaf RNA. FIG. 12B is an
autoradiograph of the Northern blot probed with
.sup.32P-dCTP-labelled full length carnation senescence-induced
lipase cDNA.
[0048] FIG. 13 is a partial nucleotide sequence (SEQ ID NO:15) and
corresponding deduced amino acid sequence of an Arabidopsis EST
(GenBank Acct: N38227) (SEQ ID NO:16) that is 55.5% identical over
a 64 amino acid region with the carnation senescence-induced
lipase. The conserved lipase consensus motif is shaded.
[0049] FIG. 14 is the nucleotide (top) (SEQ ID No:18) and derived
amino acid sequence (bottom) (SEQ ID NO:19) of the full-length
Arabidopsis senescence-induced lipase gene.
[0050] FIG. 15 is a Northern blot of total RNA isolated from leaves
of Arabidopsis plants at various stages (lane 1, two week-old
plants; lane 2, three week-old plants; lane 3, four week-old
plants; lane 4, five week-old plants; lane 5, six week-old plants)
probed with .sup.32P-dCTP-labelled full-length Arabidopsis
senescence-induced lipase. The autoradiograph is at the top (15A)
and the ethidium bromide stained gel below (15B).
[0051] FIG. 16 is a Northern blot of total RNA isolated from leaves
of three week-old Arabidopsis plants treated with 50 .mu.M ethephon
(a source of ethylene) and probed with .sup.32P-dCTP-labelled
full-length Arabidopsis senescence-induced lipase. The
autoradiograph is at the top (16A) and the ethidium bromide stained
gel below (16B).
[0052] FIG. 17 is a photograph of 4.6 week-old Arabidopsis
wild-type plants (left) and transgenic plants (right) expressing
the full-length Arabidopsis senescence-induced lipase gene in
antisense orientation showing increased leaf size in the transgenic
plants.
[0053] FIG. 18 is a photograph of 6.3 week-old Arabidopsis
wild-type plants (left) and transgenic plants (right) expressing
the full-length Arabidopsis senescence-induced lipase gene in
antisense orientation showing increased leaf size and delayed leaf
senescence in the transgenic plants.
[0054] FIG. 19 is a photograph of 7 week-old Arabidopsis wild-type
plants (left) and transgenic plants (right) expressing the
full-length Arabidopsis senescence-induced lipase gene in antisense
orientation showing increased leaf size in the transgenic
plants.
[0055] FIG. 20 is a graph showing the increase in seed yield in
three T.sub.1 transgenic Arabidopsis plant lines expressing the
senescence-induced lipase gene in antisense orientation. Seed yied
is expressed as volume of seed. SE for n=30 is shown for wild-type
plants.
[0056] FIG. 21 is a Western blot of total protein isolated from
leaves of four week-old Arabidopsis wild-type plants and
corresponding transgenic plants expressing the full-length
senescence-induced lipase gene in antisense orientation. (Lanes 1
and 2 were loaded with 9 .mu.g of protein, and lanes 3 and 4 were
loaded with 18 .mu.g of protein). The blot was probed with antibody
raised against the Arabidopsis senescence-induced lipase protein.
The expression of the senescence-induced lipase is reduced in all
transgenic plants.
DETAILED DESCRIPTION OF THE INVENTION
[0057] Methods and compositions are provided for altering the
expression of senescence-induced lipase gene(s) in plant cells.
Alteration of expression of the senescence-induced lipase gene(s)
in plants results in delayed onset of senescence and improved
resistance to environmental stress, thus extending the plant
shelf-life and/or growth period.
[0058] A full length cDNA sequence encoding a carnation lipase gene
exhibiting senescence-induced expression has been isolated from a
cDNA library made from RNA of senescing petals of carnation
(Dianthus caryophyllus) flowers. Polynucleotide probes
corresponding to selected regions of the isolated carnation flower
lipase cDNA sequence as well as the full length carnation lipase
cDNA were used to determine the presence of mRNA encoding the
lipase gene in senescing carnation leaves, ripening tomato fruit
and senescing green bean leaves, as well as environmentally
stressed (chilled) tomato leaves. Primers designed from the
carnation lipase cDNA were used to generate a polymerase chain
reaction (PCR) product using tomato leaf genomic DNA as template.
The PCR product contains a partial open reading frame which encodes
a partial protein sequence including the conserved lipase consensus
motif, ITFTGHSLGA (SEQ ID NO:3). The tomato nucleotide sequence has
53.4% sequence identity with the carnation senescence-induced
lipase sequence and 43.5% identity with Arabidopsis lipase
sequence. The Arabidopsis lipase sequence has 44.3% identity with
the carnation nucleotide sequence.
[0059] The carnation senescence-induced lipase gene of the present
invention was isolated by screening a cDNA expression library
prepared from senescing carnation petals with antibodies raised
against cytosolic lipid-protein particles, a source of the
carnation lipase. A positive full-length cDNA clone corresponding
to the carnation senescence-induced lipase gene was obtained and
sequenced. The nucleotide sequence of the senescence-induced lipase
cDNA clone is shown in SEQ ID NO:1. The cDNA clone encodes a 447
amino acid polypeptide (SEQ ID NO: 2) having a calculated molecular
mass of 50.2 kDa. Expression of the cDNA clone in E. coli yielded a
protein of the expected molecular weight that exhibits acyl
hydrolase activity, i.e., the expressed protein hydrolyzes
p-nitrophenylpalmitate, phospholipid and triacylglycerol. Based on
the expression pattern of the enzyme in developing carnation
flowers and the activity of the protein, it is involved in
senescence.
[0060] An Arabidopsis senescence-induced lipase gene of the present
invention was also isolated by PCR using a senescing Arabidopsis
leaf cDNA library as template in the reaction. The nucleotide and
derived amino acid sequence of the Arabidopsis senescence-induced
lipase gene is shown in FIG. 14 (SEQ ID NO:18) Based on the
expression pattern of the lipase gene in developing plants, it is
involved in senescence.
[0061] Northern blots of carnation petal total RNA probed with the
full length carnation cDNA show that the expression of the
senescence-induced lipase gene is significantly induced just prior
to the onset of natural senescence (FIG. 4). Northern blot analyses
also demonstrate that the senescence-induced lipase gene is induced
by environmental stress conditions, e.g., chilling (FIG. 12) and
ethylene (FIGS. 4 and 9), which is known to be produced in response
to environmental stress. The Northern blot analyses show that the
presence of carnation senescence-induced lipase mRNA is
significantly higher in senescing (developmental stage IV) than in
young stage I, II and III carnation petals. Furthermore,
ethylene-stimulated stage II flowers also show higher
senescence-induced lipase gene expression. Similarly, plants that
have been exposed to chilling temperatures and returned to ambient
temperature also show induced expression of the senescence-induced
lipase gene coincident with the development of chilling injury
symptoms (e.g., leakiness) (FIGS. 11 and 12).
[0062] Expression of the Arabidopsis senescence-induced lipase gene
is similarly regulated. Northern blot analysis of total RNA from
leaves of Arabidopsis plants at various stages of development show
that the lipase gene is upregulated coincident with the onset of
leaf senescence. (FIG. 15) Also, like the carnation
senescence-induced lipase gene, the Arabidopsis senescence-induced
lipase gene is upregulated by treatment with ethylene, a plant
hormone that induces leaf senescence. (FIG. 16)
[0063] The overall pattern of gene expression in various plants,
e.g., carnation, green beans, tomato, Arabidopsis, and various
plant tissues, e.g., leaves, fruit and flowers, demonstrates that
the lipase genes of the invention are involved in the initiation of
senescence in these plants and plant tissues. Thus, it is expected
that by substantially repressing or altering the expression of the
senescence-induced lipase genes in plant tissues, senescence,
deterioration and spoilage can be delayed, increasing the
shelf-life of perishable fruits, flowers and vegetables. This can
be achieved by producing transgenic plants in which the lipase cDNA
or an oligonucleotide fragment thereof is expressed in the
antisense configuration in fruits, flowers, vegetable, agronomic
crop plants and forest species, preferably using a constitutive
promoter such as the CaMV 35S promoter, or using a tissue-specific
or senescence-inducible promoter.
[0064] The carnation senescence-induced lipase gene is a single
copy gene. Southern blot analysis of carnation genomic DNA cut with
various restriction enzymes that do not recognize sequences within
the open reading frame of the senescence-induced lipase cDNA was
carried out. The restriction enzyme-digested genomic DNA was probed
with .sup.32P-dCTP-labelled full length cDNA (SEQ ID NO:1). Under
high stringency hybridization conditions, only one restriction
fragment hybridizes to the cDNA clone (68.degree. C. for both
hybridization and washing; washing buffer: 0.2%.times.SSC, 0.1%
SDS). Thus, the carnation senescence-induced lipase gene is a
single copy gene (FIG. 6). The fact that this gene is not a member
of a multigene family in carnations strongly suggests that it is a
single copy gene in other plants.
[0065] Knowledge of the complete nucleotide sequence of the
carnation senescence-induced lipase gene or Arabidopsis
senescence-induced lipase gene is sufficient for the isolation of
the senescence-induced lipase gene(s) from various other plant
species. Indeed, as demonstrated herein, oligonucleotide primers
based on the carnation cDNA sequence have been successfully used to
generate tomato leaf senescence-induced lipase gene fragments by
polymerase chain reactions using tomato leaf genomic DNA as
template.
[0066] The cloned senescence-induced lipase gene(s) or fragment(s)
thereof, alone or in combination, when introduced in reverse
orientation (antisense) under control of a constitutive promoter,
such as the fig wart mosaic virus 35S promoter, the cauliflower
mosaic virus promoter CaMV35S or the MAS promoter, can be used to
genetically modify plants and alter senescence in the modified
plants. Selected antisense sequences from other plants which share
sufficient sequence identity with the carnation senescence-induced
lipase gene can be used to achieve similar genetic modification.
One result of the genetic modification is a reduction in the amount
of endogenous translatable senescence-induced lipase-encoding mRNA.
Consequently, the amount of senescence-induced lipase produced in
the plant cells is reduced, thereby reducing the amount of cell
membrane damage and cell leakage, e.g., reduced leaf, fruit and/or
flower senescence and spoilage, due to aging or environmental
stress.
[0067] For example, Arabidopsis plants transformed with vectors
that express the full-length Arabidopsis senescence-induced lipase
gene in antisense orientation, under regulation of double 35S
promoter exhibit larger leaf size and overall larger plant growth
as compared to wild-type plants as shown in FIGS. 17 and 18. These
plants also demonstrate delayed leaf senescence, as shown in FIG.
19.
[0068] The effect of reduced expression of the senescence-induced
lipase gene brought about by expressing the full-length lipase gene
in antisense orientation in transgenic Arabidopsis plants is also
seen as an increase in seed yield in the transformed plants.
Arabidopsis plant lines expressing the full-length
senescence-induced lipase gene produce up to about two to three
times more seed than wild type plants. (FIG. 20)
[0069] That the effects observed in transgenic plants on biomass,
leaf senescence and seed yield are due to a decrease in
senescence-induced lipase in these plants is shown in FIG. 21. The
transgenic plants of the invention exhibit significantly reduced
expression of senescence-induced lipase in comparison to wild-type
plants.
[0070] Thus, the methods and sequences of the present invention can
be used to delay plant spoilage, including leaf or fruit spoilage,
as well as to increase plant biomass and seed yield, and in
general, alter senesence in plants.
[0071] The isolated nucleotide sequences of this invention can be
used to isolate substantially complementary senescence-induced
lipase nucleotide sequence from other plants or organisms. These
sequences can, in turn, be used to transform plants and thereby
alter senescence of the transformed plants in the same manner as
shown with the use of the isolated nucleotide sequences shown
herein.
[0072] The genetic modifications observed with transformation of
plants with senescence-induced lipase, functional fragments thereof
or combinations thereof can effect a permanent change in levels of
senescence-induced lipase in the plant and be propagated in
offspring plants by selfing or other reproductive schemes. The
genetically altered plant is used to produce a new line of plants
wherein the alteration is stably transmitted from generation to
generation. The present invention provides for the first time the
appropriate DNA sequences which may be used to achieve a stable
genetic modification of senescence in a wide range of different
plants.
[0073] For the identification and isolation of the
senescence-induced lipase gene, in general, preparation of plasmid
DNA, restriction enzyme digestion, agarose gel electrophoresis of
DNA, polyacrylamide gel electrophoresis of protein, Southern blots,
Northern blots, DNA ligation and bacterial transformation were
carried out using conventional methods well-known in the art. See,
for example, Sambrook, J. et al., Molecular Cloning: A Laboratory
Manual, 2nd ed., Cold Spring Harbor Press, Cold Spring Harbor,
N.Y., 1989. Techniques of nucleic acid hybridization are disclosed
by Sambrook (Supra).
[0074] As used herein, the term "plant" refers to either a whole
plant, a plant part, a plant cell or a group of plant cells. The
type of plant which can be used in the method of the invention is
not limited and includes, for example, ethylene-sensitive and
ethylene-insensitive plants; fruit bearing plants such as apricots,
apples, oranges, bananas, grapefruit, pears, tomatoes,
strawberries, avocados, etc.; vegetables such as carrots, peas,
lettuce, cabbage, turnips, potatoes, broccoli, asparagus, etc.;
flowers such as carnations, roses, mums, etc.; and in general, any
plant that can take up and express the DNA molecules of the present
invention. It may include plants of a variety of ploidy levels,
including haploid, diploid, tetraploid and polyploid.
[0075] A transgenic plant is defined herein as a plant which is
genetically modified in some way, including but not limited to a
plant which has incorporated heterologous or homologous
senescence-induced lipase DNA or modified DNA or some portion of
heterologous senescence-induced lipase DNA or homologous
senescence-induced lipase DNA into its genome. The altered genetic
material may encode a protein, comprise a regulatory or control
sequence, or may be or include an antisense sequence or encode an
antisense RNA which is antisense to the endogenous
senescence-induced lipase DNA or mRNA sequence or portion thereof
of the plant. A "transgene" or "transgenic sequence" is defined as
a foreign gene or partial sequence which has been incorporated into
a transgenic plant.
[0076] The term "hybridization" as used herein is generally used to
mean hybridization of nucleic acids at appropriate conditions of
stringency as would be readily evident to those skilled in the art
depending upon the nature of the probe sequence and target
sequences. Conditions of hybridization and washing are well known
in the art, and the adjustment of conditions depending upon the
desired stringency by varying incubation time, temperature and/or
ionic strength of the solution are readily accomplished. See, for
example, Sambrook, J. et al., Molecular Cloning: A Laboratory
Manual, 2nd edition, Cold spring harbor Press, Cold Spring harbor,
N.Y., 1989. The choice of conditions is dictated by the length of
the sequences being hybridized, in particular, the length of the
probe sequence, the relative G-C content of the nucleic acids and
the amount of mismatches to be permitted. Low stringency conditions
are preferred when partial hybridization between strands that have
lesser degrees of complementarity is desired. When perfect or near
perfect complementarity is desired, high stringency conditions are
preferred. For typical high stringency conditions, the
hybridization solution contains 6.times.S.S.C., 0.01 M EDTA,
1.times.Denhardt's solution and 0.5% SDS. Hybridization is carried
out at about 68.degree. C. for about 3 to 4 hours for fragments of
cloned DNA and for about 12 to about 16 hours for total eukaryotic
DNA. For lower stringencies the temperature of hybridization is
reduced to about 12.degree. C. below the melting temperature
(T.sub.M) of the duplex. The T.sub.M is known to be a function of
the G-C content and duplex length as well as the ionic strength of
the solution.
[0077] As used herein, the term "substantial sequence identity" or
"substantial homology" is used to indicate that a nucleotide
sequence or an amino acid sequence exhibits. substantial structural
or functional equivalence with another nucleotide or amino acid
sequence. Any structural or functional differences between
sequences having substantial sequence identity or substantial
homology will be de minimis; that is, they will not affect the
ability of the sequence to function as indicated in the desired
application. Differences may be due to inherent variations in codon
usage among different species, for example. Structural differences
are considered de minimis if there is a significant amount of
sequence overlap or similarity between two or more different
sequences or if the different sequences exhibit similar physical
characteristics even if the sequences differ in length or
structure. Such characteristics include for example, ability to
hybridize under defined conditions, or in the case of proteins,
immunological crossreactivity, similar enzymatic activity, etc.
[0078] Additionally, two nucleotide sequences are "substantially
complementary" if the sequences have at least about 40 percent,
more preferably, at least about 60 percent and most preferably
about 90 percent sequence similarity between them. Two amino acid
sequences are substantially homologous if they have at least 40%,
preferably 70% similarity between the active portions of the
polypeptides.
[0079] As used herein, the phrase "hybridizes to a corresponding
portion" of a DNA or RNA molecule means that the molecule that
hybridizes, e.g., oligonucleotide, polynucleotide, or any
nucleotide sequence (in sense or antisense orientation) recognizes
and hybridizes to a sequence in another nucleic acid molecule that
is of approximately the same size and has enough sequence
similarity thereto to effect hybridization under appropriate
conditions. For example, a 100 nucleotide long antisense molecule
from the 3' coding or non-coding region of carnation lipase will
recognize and hybridize to an approximately 100 nucleotide portion
of a nucleotide sequence within the 3' coding or non-coding region,
respectively of the Arabidopsis senescence-induced lipase gene or
any other plant senescence-induced lipase gene so long as there is
about 70% or more sequence similarity between the two sequences. It
is to be understood that the size of the "corresponding portion"
will allow for some mismatches in hybridization such that the
"corresponding portion" may be smaller or larger than the molecule
which hybridizes to it, for example 20-30% larger or smaller,
preferably no more than about 12-15% larger or smaller.
[0080] The term "functional derivative" of a nucleic acid (or poly-
or oligonucleotide) is used herein to mean a fragment, variant,
homolog, or analog of the gene or nucleotide sequence encoding
senescence-induced lipase. A functional derivative may retain at
least a portion of the function of the senescence-induced lipase
encoding DNA which permits its utility in accordance with the
invention. Such function may include the ability to hybridize with
native carnation senescence-induced lipase or substantially
homologous DNA from another plant which encodes senescence-induced
lipase or with an mRNA transcript thereof, or, in antisense
orientation, to inhibit the transcription and/or translation of
plant senescence-induced lipase mRNA, or the like.
[0081] A "fragment" of the gene or DNA sequence refers to any
subset of the molecule, e.g., a shorter polynucleotide or
oligonucleotide. A "variant" refers to a molecule substantially
similar to either the entire gene or a fragment thereof, such as a
nucleotide substitution variant having one or more substituted
nucleotides, but which maintains the ability to hybridize with the
particular gene or to encode mRNA transcript which hybridizes with
the native DNA. A "homolog" refers to a fragment or variant
sequence from a different plant genus or species. An "analog"
refers to a non-natural molecule substantially similar to or
functioning in relation to either the entire molecule, a variant or
a fragment thereof.
[0082] By "altered expression" or "modified expression" of a gene,
e.g., the senescence-induced lipase gene, is meant any process or
result whereby the normal expression of the gene, for example, that
expression occurring in an unmodified carnation or other plant, is
changed in some way. As intended herein, alteration in gene
expression is complete or partial reduction in the expression of
the senescence-induced lipase gene, but may also include a change
in the timing of expression, or another state wherein the
expression of the senescence-induced lipase gene differs from that
which would be most likely to occur naturally in an unmodified
plant or cultivar. A preferred alteration is one which results in
reduction of senescence-induced lipase production by the plant
compared to production in an unmodified plant.
[0083] In producing a genetically altered plant in accordance with
this invention, it is preferred to select individual plantlets or
plants by the desired trait, generally reduced senescence-induced
lipase expression or production. Expression of senescence-induced
lipase can be quantitated, for example in a conventional
immunoassay method using a specific antibody as described herein.
Also, senescence-induced lipase enzymatic activity can be measured
using biochemical methods as described herein.
[0084] In order for a newly inserted gene or DNA sequence to be
expressed, resulting in production of the protein which it encodes,
or in the case of antisense DNA, to be transcribed, resulting in an
antisense RNA molecule, the proper regulatory elements should be
present in proper location and orientation with respect to the gene
or DNA sequence. The regulatory regions may include a promoter, a
5'-non-translated leader sequence and a 3'-polyadenylation sequence
as well as enhancers and other regulatory sequences.
[0085] Promoter regulatory elements that are useful in combination
with the senescence-induced lipase gene to generate sense or
antisense transcripts of the gene include any plant promoter in
general, and more particularly, a constitutive promoter such as the
fig wart mosaic virus 35S promoter, double 35S promoter, the
cauliflower mosaic virus promoter, CaMV35S promoter, or the MAS
promoter, or a tissue-specific or senescence-induced promoter, such
as the carnation petal GST1 promoter or the Arabidopsis SAG12
promoter (See, for example, J. C. Palaqui et al., Plant Physiol.,
112:1447-1456 (1996); Morton et al., Molecular Breeding, 1:123-132
(1995); Fobert et al., Plant Journal, 6:567-577 (1994); and Gan et
al., Plant Physiol., 113:313 (1997), incorporated herein by
reference). Preferably, the promoter used in the present invention
is a constitutive promoter.
[0086] Expression levels from a promoter which is useful for the
present invention can be tested using conventional expression
systems, for example by measuring levels of a reporter gene
product, e.g., protein or mRNA in extracts of the leaves, flowers,
fruit or other tissues of a transgenic plant into which the
promoter/reporter have been introduced.
[0087] The present invention provides antisense oligonucleotides
and polynucleotides complementary to the gene encoding carnation
senescence-induced lipase, complementary to the gene encoding
Arabidopsis senescence-induced lipase or complementary to a gene or
gene fragment from another plant, which hybridizes with the
carnation or Arabidopsis senescence-induced lipase gene under low
to high stringency conditions. Such antisense oligonucleotides
should be at least about six nucleotides in length to provide
minimal specificity of hybridization and may be complementary to
one strand of DNA or mRNA encoding senescence-induced lipase or a
portion thereof, or to flanking sequences in genomic DNA which are
involved in regulating senescence-induced lipase gene expression.
The antisense oligonucleotide may be as large as 100 nucleotides
and may extend in length up to and beyond the full coding sequence
for which it is antisense. The antisense oligonucleotides can be
DNA or RNA or chimeric mixtures of DNA and RNA or derivatives or
modified versions thereof, single stranded or double stranded.
[0088] The action of the antisense oligonucleotide may result in
alteration, primarily inhibition, of senescence-induced lipase gene
expression in cells. For a general discussion of antisense see:
Alberts, et al., Molecular Biology of the Cell, 2nd ed., Garland
Publishing, Inc. New York, N.Y. (1989, in particular pages 195-196,
incorporated herein by reference).
[0089] The antisense oligonucleotide may be complementary to any
portion of the senescence-induced lipase gene. In one embodiment,
the antisense oligonucleotide may be between 6 and 100 nucleotides
in length, and may be complementary to the 5'-non-coding sequence
or 3' end of the senescence-induced lipase sequence, for example.
Antisense oligonucleotides primarily complementary to 5'-non-coding
sequences are known to be effective inhibitors of expression of
genes encoding transcription factors. Branch, M. A., Molec. Cell
Biol., 13:4284-4290 (1993).
[0090] Preferred antisense oligonucleotides are substantially
complementary to a corresponding portion of the mRNA encoding
senescence-induced lipase. For example, introduction of the full
length cDNA clone encoding senescence-induced lipase in an
antisense orientation into a plant is expected to result in
successful altered senescence-induced lipase gene expression.
Moreover, introduction of partial sequences, targeted to specific
portions of the senescence-induced lipase gene, can be equally
effective.
[0091] The minimal amount of homology required by the present
invention is that sufficient to result in sufficient
complementarity to provide recognition of the specific target RNA
or DNA and inhibition or reduction of its translation or function
while not affecting function of other RNA or DNA molecules and the
expression of other genes. While the antisense oligonucleotides of
the invention comprise sequences complementary to at least a
portion of an RNA transcript of the senescence-induced lipase gene,
absolute complementarity, although preferred is not required. The
ability to hybridize may depend on the length of the antisense
oligonucleotide and the degree of complementarity. Generally, the
longer the hybridizing nucleic acid, the more base mismatches with
the senescence-induced lipase target sequence it may contain and
still form a stable duplex. One skilled in the art can ascertain a
tolerable degree of mismatch by use of standard procedures to
determine the melting temperature of the hybridized complex, for
example.
[0092] The antisense RNA oligonucleotides may be generated
intracellularly by transcription from exogenously introduced
nucleic acid sequences. The antisense molecule may be delivered to
a cell by transformation or transfection or infection with a
vector, such as a plasmid or virus into which is incorporated DNA
encoding the antisense senescence-induced lipase sequence operably
linked to appropriate regulatory elements, including a promoter.
Within the cell the exogenous DNA sequence is expressed, producing
an antisense RNA of the senescence-induced lipase gene.
[0093] Vectors can be plasmids, preferably, or may be viral or
other vectors known in the art to replicate and express genes
encoded thereon in plant cells or bacterial cells. The vector
becomes chromosomally integrated such that it can be transcribed to
produce the desired antisense senescence-induced lipase RNA. Such
plasmid or viral vectors can be constructed by recombinant DNA
technology methods that are standard in the art. For example, the
vector may be a plasmid vector containing a replication system
functional in a prokaryotic host and an antisense oligonucleotide
or polynucleotide according to the invention. Alternatively, the
vector may be a plasmid containing a replication system functional
in Agrobacterium and an antisense oligonucleotide or polynucleotide
according to the invention. Plasmids that are capable of
replicating in Agrobacterium are well known in the art. See, Miki,
et al., Procedures for Introducing Foreign DNA Into Plants, Methods
in Plant Molecular Biology and Biotechnology, Eds. B. R. Glick and
J. E. Thompson. CRC Press (1993), PP. 67-83.
[0094] The carnation lipase gene was cloned in the antisense
orientation into a plasmid vector in the following manner. The pCD
plasmid, which is constructed from a pUC18 backbone and contains
the 35S promoter from cauliflower mosaic virus (CaMV) followed by a
multiple cloning site and an octapine synthase termination sequence
was used for cloning the carnation lipase gene. The pCd-lipase
(antisense) plasmid was constructed by subcloning the full length
carnation lipase gene in the antisense orientation into a Hind3
site and EcoR1 site of pCd. Similarly, a pCD.DELTA.35S-GST1-lipase
(antisense) plasmid was constructed by first subcloning a PCR
amplified fragment (-703 to +19 bp) of the carnation Glutathione S
Transferase 1 (GST1) promoter into the BamH1 and Sal1 sites of the
pCd vector. The full length carnation lipase gene was then
subcloned in the antisense orientation into the Hind3 and EcoR1
sites of the construct. Another plasmid, pGd35S-GST1-GUS plasmid,
was constructed by first subcloning a PCR-amplified fragment (-703
to +19 bp) of the carnation Glutathione S-Transferase 1 (GST1)
promoter into the BamH1 and Sal1 sites of the pCd vector. The
reporter gene beta-glucuronidase (GUS) was then subcloned into the
Sal1 and EcoRI sites of the construct. The pCd-35S.sup.2-lipase
(antisense) plasmid was constructed by first subcloning a double
35S promoter (containing two copies of the CaMV 35S promoter in
tandem) into the Sma1 and Hind3 sites of the pCd vector. The full
length carnation lipase gene was then subcloned in the antisense
orientation into the Hind3 and EcoR1 sites of the construct.
[0095] An oligonucleotide, preferably between about 6 and about 100
nucleotides in length and complementary to the target sequence of
senescence-induced lipase, may be prepared by recombinant
nucleotide technologies or may be synthesized from mononucleotides
or shorter oligonucleotides, for example. Automated synthesizers
are applicable to chemical synthesis of the oligo- and
polynucleotides of the invention. Procedures for constructing
recombinant nucleotide molecules in accordance with the present
invention are disclosed in Sambrook, et al., In: Molecular Cloning:
A Laboratory Manual, 2nd ed., Cold Spring Harbor Press, Cold Spring
Harbor, N.Y. (1989), which is incorporated herein in its entirety.
Oligonucleotides which encode antisense RNA complementary to
senescence-induced lipase sequence can be prepared using procedures
well known to those in the art. Details concerning such procedures
are provided in Maniatis, T. et al., Molecular mechanisms in the
Control of Gene expression, eds., Nierlich, et al., eds., Acad.
Press, N.Y. (1976).
[0096] In an alternative embodiment of the invention, inhibition of
expression of endogenous plant senescence-induced lipase is the
result of co-suppression through over-expression of an exogenous
senescence-induced lipase gene or gene fragment introduced into the
plant cell. In this embodiment of the invention, a vector encoding
senescence-induced lipase in the sense orientation is introduced
into the cells in the same manner as described herein for antisense
molecules. Preferably, the senescence-induced lipase is operatively
linked to a strong constitutive promoter, such as for example the
fig wart mosaic virus promoter or CaMV35S.
[0097] Transgenic plants made in accordance with the present
invention may be prepared by DNA transformation using any method of
plant transformation known in the art. Plant transformation methods
include direct co-cultivation of plants, tissues or cells with
Agrobacterium tumerfaciens or direct infection (Miki, et al., Meth.
in Plant Mol. Biol. and Biotechnology, (1993), p. 67-88); direct
gene transfer into protoplasts or protoplast uptake (Paszkowski, et
al., EMBO J., 12:2717 (1984); electroporation (Fromm, et al.,
Nature, 319:719 (1986); particle bombardment (Klein et al.,
BioTechnology, 6:559-563 (1988); injection into meristematic
tissues of seedlings and plants (De LaPena, et al., Nature,
325:274-276 (1987); injection, into protoplasts of cultured cells
and tissues (Reich, et al., BioTechnology, 4:1001-1004 (1986)).
[0098] Generally a complete plant is obtained from the
transformation process. Plants are regenerated from protoplasts,
callus, tissue parts or explants, etc. Plant parts obtained from
the regenerated plants in which the expression of
senescence-induced lipase is altered, such as leaves, flowers,
fruit, seeds and the like are included in the definition of "plant"
as used herein. Progeny, variants and mutants of the regenerated
plants are also included in the definition of "plant."
[0099] The present invention also provides carnation or Arabidopsis
senescence-induced lipase protein encoded by the cDNA molecules of
the invention and proteins which cross-react with antibody to the
carnation or Arabidopsis protein. Such proteins have the amino acid
sequence set forth in SEQ ID No:2, shown in FIG. 1, share cross
reactivity with antibodies to the protein set forth in SEQ ID NO:2,
have the amino acid sequence set forth in SEQ ID NO:19 (shown in
FIG. 14) or share cross reactivity with antibodies to the protein
set forth in SEQ ID NO:19.
[0100] The carnation or Arabidopsis senescence-induced lipase
protein or functional derivatives thereof are preferably produced
by recombinant technologies, optionally in combination with
chemical synthesis methods. In one embodiment of the invention the
senescence-induced lipase is expressed as a fusion protein
consisting of the senescence-induced lipase fused with maltose
binding protein. Expression of a clone encoding the recombinant
fusion protein yields a fusion protein of the expected molecular
weight that hydrolyzes p-nitrophenylpalmitate, phospholipid and
triacylglycerol, which is an indicator of lipase activity. The
recombinant senescence-induced lipase protein shows a predominant
band in Western blot analyses after immunoblotting with antibody to
carnation senescence-induced lipase. The free senescence-induced
lipase (50.2 Kda), which is released by treatment of the fusion
protein with the protease, factor Xa, also reacts with the
senescence-induced lipase antibody in Western blot analysis (FIG.
3). A motif search of the senescence-induced lipase amino acid
sequence shows the presence of a potential N-myristoylation site
(FIG. 1) for the covalent attachment of myristate via an amide
linkage (See Johnson, et al., Ann. Rev. Biochem., 63: 869-914
(1994); Towler, et al., Ann. Rev. Biochem., 57:67-99 (1988); and R.
J. A. Grand, Biochem. J., 258:625-638 (1989). The protein motif
search also showed that the carnation senescence-induced lipase
contains a sequence, ITFAGHSLGA, (SEQ ID NO:4) which is the
conserved lipase consensus sequence (Table 1). The conserved lipase
consensus sequence from a variety of plants is shown in the table
below.
TABLE-US-00001 TABLE 1 Plant Species conserved Lipase Sequence
Carnation I T F A G H S L G A (SEQ ID NO: 4) Tomato I T F T G H S L
G A (SEQ ID NO: 3) Arabidopsis I T T C G H S L G A (SEQ ID NO: 9)
Ipomoea nil I T V T G H S L G S (SEQ ID NO: 10)
[0101] The senescence-induced lipase protein of the invention was
shown to possess lipase activity in both in vitro and in situ
assays. For in vitro measurements, p-nitrophenylpalmitate and
soybean phospholipid (40% phosphatidylcholine and 60% other
phospholipids) were used as substrates, and the products of the
reactions, p-nitrophenol and free fatty acids, respectively, were
measured spectrophotometrically (Pencreac'h and Baratti, 1996;
Nixon and Chan, 1979; Lin et al., 1983). Lipase activity was also
measured in vitro by gas chromatography using a modification of the
method described by Nixon and Chan (1979) and Lin et al. (1983).
The reaction mixture contained 100 mM Tris-HCl (pH 8.0), 2.5 mM
substrate (trilinolein, soybean phospholipid or
dilinoleylphosphatidylcholine) and enzyme protein (100 .mu.g) in a
final volume of 100 .mu.l. The substrates were emulsified in 5% gum
arabic prior to being added to the reaction mixture. To achieve
this, the substrates were dissolved in chloroform, added to the gum
arabic solution and emulsified by sonication for 30 s. After
emulsification, the chloroform was evaporated by a stream of
N.sub.2. The reaction was carried out at 25.degree. C. for varying
periods of time up to 2 hours. The reaction mixture was then
lipid-extracted, and the free fatty acids were purified by TLC,
derivitized and quantified by GC (McKegney et al., 1995).
[0102] Lipolytic acyl hydrolase activity was measure in situ as
described by Furukawa et al. (1983) and modified by Tsuboi et al.
(1996). In this latter assay, E. coli transformed with the full
length cDNA clone encoding senescence-induced lipase were grown in
minimal salt medium supplemented with Tween 40 or Tween 60, both of
which are long chain fatty acid esters, as the only source of
carbon. Thus, carbon for bacterial growth was only available if the
fatty acid esters were hydrolyzed by lipase. The finding that E.
coli transformed with the scenescence-induced lipase cDNA grow in
Tween 40- and Tween 60-basal medium after an initial lag phase,
whereas control cultures of E. coli that were not transformed do
not grow, confirms the lipase activity of the encoded recombinant
protein (FIG. 5). That is, the senescence-induced lipase releases
stearate (Tween 60) and palmitate (Tween 40) to obtain the
necessary carbon for growth.
[0103] "Functional derivatives" of the senescence-induced lipase
protein as described herein are fragments, variants, analogs, or
chemical derivatives of senescence-induced lipase, which retain at
least a portion of the senescence-induced lipase activity or
immunological cross reactivity with an antibody specific for
senescence-induced lipase. A fragment of the senescence-induced
lipase protein refers to any subset of the molecule. Variant
peptides may be made by direct chemical synthesis, for example,
using methods well known in the art. An analog of
senescence-induced lipase refers to a non-natural protein
substantially similar to either the entire protein or a fragment
thereof. Chemical derivatives of senescence-induced lipase contain
additional chemical moieties not normally a part of the peptide G38
or peptide fragment. Modifications may be introduced into the
senescence-induced lipase peptide or fragment thereof by reacting
targeted amino acid residues of the peptide with an organic
derivatizing agent that is capable of reacting with selected side
chains or terminal residues.
[0104] A senescence-induced lipase protein or peptide according to
the invention may be produced by culturing a cell transformed with
a nucleotide sequence of this invention (in the sense orientation),
allowing the cell to synthesize the protein and then isolating the
protein, either as a free protein or as a fusion protein, depending
on the cloning protocol used, from either the culture medium or
from cell extracts. Alternatively, the protein can be produced in a
cell-free system. Ranu, et al., Meth. Enzymol., 60:459-484,
(1979).
[0105] Having now generally described the invention, the same will
be more readily understood through reference to the following
examples which are provided by way of illustration, and are not
intended to be limiting to the present invention.
Example 1
Plant Materials Used to Isolate the Carnation Lipase cDNA
[0106] Carnation plants (Dianthus caryophyllus L. cv. Improved
white Sim) grown and maintained in a greenhouse were used to
isolate the nucleotide sequence corresponding to the
senescence-induced lipase gene. Flower tissue in the form of
senescing flower petals (from different developmental stages) was
collected in buffer or stored at -70.degree. C. until used.
[0107] Cytosolic lipid particles were isolated from carnation
flower petals harvested just before the onset of senescence.
Carnation petals (25 g/150 ml buffer) were homogenized at 4.degree.
C. in homogenization buffer (50 mM Epps-0.25 M sorbitol pH 7.4, 10
mm EDTA, 2 mM EGTA, 1 mM PMSF, 1 mM benzamadine, 10 mm
amino-n-caproic acid and 4% polyvinylpolypyrrolidone) for 45
seconds in an Omnimizer and for an additional minute in a Polytron
homogenizer. The homogenate was filtered through four layers of
cheesecloth, and the filtrate was centifuged at 10,000 g for twenty
minutes at 4.degree. C. The supernatant was centrifuged for one
hour at 250,000 g to isolate microsomal membranes. The lipid
particles were obtained from the post-microsomal supernatant by
collecting the particles after floatation centrifugation by the
method of Hudak and Thompson, (1997), Physiol. Plant., 114:705-713.
The supernatant was made 10% (w/v) with sucrose, and 23 ml of the
supernatant were poured into 60 Ti Beckman centrifuge tubes,
overlayed with 1.5 ml isolation buffer and centrifuged at 305,000 g
for 12 hours at 4.degree. C. The particles were removed from the
isolation buffer overlayer with a Pasteur pipette. Three ml of
particle suspension were loaded onto a Sepharose G-25 column
equilibrated with sterile PBS (10 mM sodium phosphate buffer pH 7.5
plus 0.85% sodium chloride) and the suspension was eluted with
sterile PBS. The void volume containing the particles was eluted
and concentrated using a Centricon-10 filter (available from
Amicon) to a protein concentration of 600 .mu.g. The lipid
particles were then used to generate antibodies in rabbits
inoculated with 300 .mu.g of the particles. The IgG titer of the
blood was tested by Western blot analysis.
Messenger RNA (mRNA) Isolation
[0108] Total RNA was isolated from petals of stage I, II, III or IV
carnation flowers essentially as described by Chomczynski and
Sachi, Anal. Biochem., 162:156-159 (1987). Briefly, 15 g of petal
tissue were frozen in liquid nitrogen and homogenized for 30
seconds in buffer containing 4 M guanidinium thiocyanate, 25 mM
sodium citrate, pH 7.0, 0.5% sarkosyl and 0.1 M
.beta.-mercaptoethanol. 150 ml water-saturated phenol, 30 ml of
chloroform and 15 ml of 2 M NaOAc, pH 4.0 were added to the
homogenized sample. The sample was centrifuged at 10,000 g for ten
minutes and the aqueous phase removed and nucleic acids
precipitated therefrom with 150 ml isopropanol. The sample was
centrifuged for ten minutes at 5,000 g and the pellet was washed
once with 30 ml of 4 M LiCl, extracted with 30 ml chloroform and
precipitated with 30 ml isopropanol containing 0.2 M NaOAc, pH 5.0.
The RNA was dissolved in DEPC-treated water and stored at
-70.degree. C.
[0109] PolyA.sup.+ mRNA was isolated from total RNA using the
PolyA.sup.+ tract mRNA Isolation System available from Promega.
PolyA.sup.+ mRNA was used as a template for cDNA synthesis using
the ZAP Express.degree. cDNA synthesis system available from
Stratagene (La Jolla, Calif.)
Carnation Petal cDNA Library Screening
[0110] A cDNA library made using mRNA isolated from stage IV
carnation petals was diluted to approximately 5.times.10.sup.6
PFU/ml and immunoscreened with lipid particle antiserum. Positive
cDNA clones were recovered using the ExAssist.degree. Helper
Phage/SOLR strain system and recircularized in a
pBluescript.degree. phagemid (Stratagene). A stage III carnation
petal cDNA library was also screened using a .sup.32P-labelled 19
base pair probe (5'-ACCTACTAGGTTCCGCGTC-3') (SEQ ID NO:5). Positive
cDNA clones were excised from the phages and recircularized into a
pBK-CMV.RTM. (Stratagene) phagemid using the method in the
manufacturer's instructions. The full length cDNA (1.53 kb
fragment) was inserted into the pBK-CMV vector.
Arabidopsis Leaf cDNA Library Screening
[0111] A full-length cDNA clone (1338 bp) of the senescence-induced
lipase gene from Arabidopsis thaliana was isolated by screening an
Arabidopsis senescent leaf cDNA library. The probe used for
screening the library was obtained by PCR using the scenescent leaf
library as template. The PCR primers were designed from the genomic
sequence (U93215) present in GenBank. The forward primer had the
sequence 5' ATG TCT AGA GAA GAT ATT GCG CGG CGA 3' (SEQ ID NO:20)
and the reverse primer had the sequence 5' GAT GAG CTC GAC GGA GCT
GAG AGA GAT G 3' (SEQ ID NO:21). The PCR product was subcloned into
Bluescript for sequencing. The nucleotide and amino acid sequence
of the PCR product used are shown in FIG. 14.
Plasmid DNA Isolation, DNA Sequencing
[0112] The alkaline lysis method described by Sambrook et al.,
(Supra) was used to isolate plasmid DNA. The full length positive
cDNA clone was sequenced using the dideoxy sequencing method.
Sanger, et al., Proc. Natl. Acad. Sci. USA, 74:5463-5467. The open
reading frame was compiled and analyzed using BLAST search
(GenBank, Bethesda, Md.) and alignment of the five most homologous
proteins with the derived amino acid sequence of the encoded gene
was achieved using a BCM Search Launcher: Multiple Sequence
Alignments Pattern-Induced Multiple Alignment Method (See F.
Carpet, Nuc. Acids Res., 16:10881-10890, (1987)). Functional motifs
present in the derived amino acid sequence were identified by
MultiFinder.
Expression of the Lipase as a Fusion Protein
[0113] Phagemid pBK-CMV containing the full length carnation
senescence-induced lipase was digested with EcoRI and XbaI, which
released the 1.53 Kb lipase fragment, which was subcloned into an
EcoRI and XbaI digested fusion vector, pMalc (New England BioLabs).
The pMalc vector containing the senescence-induced lipase,
designated pMLip, was used to transform E. coli BL-21(DE3)
cells.
[0114] The fusion protein encoded by pMLip, (fusion of the
senescence-induced lipase and maltose binding protein) was isolated
and purified as described in Sambrook, et al. (Supra) and Ausubel,
et al., in Current Protocols in Molecular Biology, Green Publishing
Associates and Wiley Interscience, New York, (1987), 16.4.1-16.4.3.
Briefly, E. coli BL-21 cells transformed with pMLip were
resuspended in 3 ml/g lysate buffer (50 mM Tris, pH 8.0, 100 mM
NaCl and 1 mM EDTA) containing 8 .mu.l of 50 mM PMSF and 80 .mu.l
of 20 mg/ml lysozyme per gram of cells and incubated for twenty
minutes at room temperature with shaking. Then, 80 .mu.l of 5%
deoxycholic acid and 40 units of DNAse I were added and the cells
were shaken at room temperature until the cells completely lysed.
The cell debris was pelleted by centrifugation and resuspended in
two volumes of lysate buffer plus 8 M urea and 0.1 mM PMSF. After
one hour, seven volumes of buffer (50 mM KH.sub.2PO.sub.4, 1 mM
EDTA and 50 mM NaCl, pH 7.0) were added to neutralize the
suspension. The pH of the cell suspension was adjusted to pH 8.0
with HCl and the cell debris was pelleted. The supernatant was
dialyzed against 20 mM Tris buffer, pH 8.0, 100 mM NaCl and 1 mM
EDTA at 4.degree. C. overnight. The maltose binding protein-lipase
fusion product (Malip) was purified using an amylose column
(available from New England BioLab). Fractions containing the
fusion protein were cleaved with Protease Factor Xa (1 .mu.g/100
.mu.g fusion protein) to separate lipase from the fusion product.
Both the fusion protein and the cleaved lipase were analyzed by SDS
PAGE electrophoresis and Western blots. Maltose binding protein
encoded by pMalc was used as a control. The results are shown in
FIG. 3.
Northern Blot Hybridizations of Carnation RNA
[0115] Ten .mu.g of total RNA isolated from flowers at stages I,
II, III, IV were separated on 1% denatured formaldehyde agarose
gels and immobilized on nylon membranes. The 1.53 Kb EcoRI-XbaI
lipase fragment labelled with .sup.32P-dCTP using a random primer
kit (Boehringer Mannheim) was used to probe the filters
(7.times.10.sup.7 cpm). The filters were washed once with
1.times.SSC, 0.1% SDS at room temperature and three times with
0.2.times.SSC, 0.1% SDS at 65.degree. C. The filters were dried and
exposed to X-ray film overnight at -70.degree. C. The results are
shown in FIG. 4.
Northern Blot Hybridization of Arabidopsis RNA
[0116] Ten .mu.g of total RNA isolated from Arabidopsis leaves at
weeks 2, 3, 4, 5 and 6 of growth were separated on 1% denatured
formaldehyde agarose gels and immobilized on nylon membranes. The
full-length Arabidopsis senescence-induced lipase gene labelled
with .sup.32P-dCTP using a random primer kit (Boehringer Mannheim)
was used to probe the filters (7.times.10.sup.7 cpm). The filters
were washed once with 1.times.SSC, 0.1% SDS at room temperature and
three times with 0.2.times.SSC, 0.1% SDS at 65.degree. C. The
filters were dried and exposed to X-ray'film overnight at
-70.degree. C.
Genomic DNA Isolation and Southern Blot Hybridizations
[0117] Freshly cut carnation petals were frozen in liquid nitrogen,
ground to a powder and homogenized (2 ml/g) with extraction buffer
(0.1 M Tris, pH 8.2, 50 mM EDTA, 0.1M NaCl, 2% SDS, and 0.1 mg/ml
proteinase K) to isolate genomic DNA. The homogenized material was
incubated at 37.degree. C. for ten minutes and extracted with
phenol-chloroform-isoamyl alcohol (25:24:1). DNA was precipitated
with NaOAc and isopropanol. The DNA pellet was dissolved in
1.times.TE, pH 8.0, re-extracted with phenol, reprecipitated and
resuspended in 1.times.TE, pH 8.0.
[0118] Genomic DNA was digested with restriction endonucleases (Bam
HI, XbaI, XhoI, EcoRI, HindIII and SalI) separately and the
digested DNA was fractionated on a 1% agarose gel. The separated
DNA was blotted onto nylon membranes and hybridizations were
carried out using .sup.32P-dCTP-labelled 1.53 Kb lipase fragment.
Hybridization and washing were carried out under high stringency
conditions (68.degree. C.)). 6.times.SSC, 2.times.Denhardt's
reagent, 0.1% SDS) as well as low stringency conditions (42.degree.
C. for hybridization and washing) (6.times.SSC, 5.times.Denhardt's
reagent, 0.1% SDS). The results are shown in FIG. 6. As can be
seen, the lipase cDNA probe detects only one genomic fragment,
indicating that the carnation lipase gene is a single copy
gene.
Lipase Enzyme Assays
[0119] Lipolytic acyl hydrolase activity of the purified lipase
fusion protein was assayed spectrophotometrically using
p-nitrophenylpalmitate and soybean phospholipid as exogenous
substrates. For maltose-binding protein alone, which served as a
control, there was no detectable lipase activity with phospholipid
as a substrate (Table 2). When p-nitrophenylpalmitate was used as a
substrate with maltose-binding protein alone, a small amount of
p-nitrophenol, the expected product of a lipase reaction, was
detectable reflecting background levels of p-nitrophenol in the
commercial preparation of p-nitrophenylpalmitate (Table 2).
However, in the presence of purified lipase fusion protein, strong
lipase activity manifested as the release of free fatty acids from
phospholipid and p-nitrophenol from nitrophenylpalmitate was
evident (Table 2).
TABLE-US-00002 TABLE 2 Spectrophotometric-measurements of the
lipolytic acyl hydrolase activity of maltose-binding protein and
lipase fusion protein expressed in E. coli and purified by amylose
column chromatography. Two substrates, p-nitrophenylpalmitate and
soybean phospholipid, were used. Activities are expressed in terms
of product formed (p-nitrophenol from p-nitrophenylpalmitate and
free fatty acid from soybean phospholipid). Means .+-. SE for n = 3
replications are shown. PRODUCT pNPP p-nitrophenol free fatty acid
Protein Species (nmol/mg/min) (nmol/mg protein/min) Maltose-binding
protein 0.71 .+-. 0.02 ND* Lipase fusion protein 12.01 .+-. 1.81
46.75 .+-. 1.24 *ND, not detectable
[0120] In other experiments, the enzymatic activity of the lipase
fusion protein was assayed by gas chromatography, a technique that
enables quantitation and identification of free fatty acids
released from the substrate. Trilinolein, soybean phospholipid and
dilinoleylphosphatidylcholine were used as substrates, and the
deesterified fatty acids were purified by thin layer chromatography
prior to being analyzed by gas chromatography. In keeping with the
spectrophotometric assay (Table 2), there was no detectable lipase
activity for maltose-binding protein alone with either soybean
phospholipid or dilinoleylphosphatidylcholine, indicating that
these substrates are essentially free of deesterified fatty acids
(Table 3). However, when the lipase fusion protein was used as a
source of enzyme, palmitic, stearic and linoleic acids were
deesterified from the soybean phospholipid extract, and linoleic
acid was deesterified from dilinoleylphosphatidylcholine (Table 3).
In contrast to the phospholipid substrates, detectable levels of
free linoleic acid were present in trilinolein, but the levels of
free linoleic acid were significantly increased in the presence of
lipase fusion protein indicating that the lipase is capable of
deesterifying fatty acids from triacylglycerol as well (Table
3).
TABLE-US-00003 TABLE 3 GC measurements of the lipolytic acyl
hydrolase activity of maltose-binding protein and lipase fusion
protein expressed in E. coli and purified by amylose column
chromatography Products (.mu.g/mg protein).sup.1 Maltose- Lipase
binding fusion Substrates Protein Protein Tri-linolein.sup.2
Linoleic acid (18:2) 15.9 .+-. 0.75 33.4 .+-. 1.58 Soybean Palmitic
acid (16:0) .sup. ND.sup.4 4.80 phospholipids.sup.3 Stearic acid
(18:0) ND 9.68 Linoleic acid (18:2) ND 5.80 Dilinoleylphos-
Linoleic acid (18:2) ND 20.0 phatydilcholine.sup.3 .sup.1Reaction
was allowed to proceed for 2 hours, and was not continuously linear
over this period. .sup.2Means .+-. SE for n = 3 replications are
shown .sup.3Single experiment .sup.4Not detectable
[0121] Lipase activity of the protein obtained by expression of the
lipase cDNA in E. coli was measured in vivo as described in Tsuboi,
et al., Infect. Immunol., 64:2936-2940 (1996); Wang, et al.,
Biotech., 9:741-746 (1995); and G. Sierra, J. Microbiol. and
Serol., 23:15-22 (1957). A single colony of E. coli BL-21 cells
transformed with pMal and another E. coli BL-21 colony transformed
with pMLip were inoculated in basal salt medium (pH 7.0) containing
(g/L): K.sub.2HPO.sub.4 (4.3), K.sub.2PO.sub.4 (3.4), (NH.sub.4)
SO.sub.4(2.0), MgCl.sub.2(0.16), MnCl.sub.2.4H.sub.2O (0.001),
FeSO.sub.4.7H.sub.2O (0.0006), CaCl.sub.2.2H.sub.2O (0.026), and
NaMoO.sub.4.2H.sub.2O (0.002). Substrate, Tween 40
(polyoxyethylenesorbitan monopalmitate) or Tween 60
(polyoxyethylenesorbitan monostearate), was added at a
concentration of 1%. Growth of the bacterial cells at 37.degree. C.
with shaking was monitored by measuring the absorbance at 600 nm
(FIG. 5). As can be seen in FIG. 5, E. coli cells transformed with
pMLip were capable of growth in the Tween40/Tween60-supplemented
basal medium, after an initial lag period. However, E. coli cells
transformed with pMal did not grow in the Tween-supplemented
medium.
Example 2
Ethylene Induction of Carnation Senescence-Induced Lipase Gene
[0122] Stage II carnation flowers and carnation cuttings were
treated with 0.5 ppm ethylene in a sealed chamber for 15 hours. RNA
was extracted from the ethylene treated Stage II flower petals and
from leaves of the treated cutting, as well as from the flower and
leaves of untreated carnation flowers and cuttings as described
below.
[0123] Arabidopsis plants were treated with 50 .mu.M ethephon in a
sealed chamber for one, two or three days. RNA was extracted from
the ethephon treated leaves of the plants as follows.
[0124] Flowers or leaves (1 flower or 5 g leaves) were ground in
liquid nitrogen. The ground powder was mixed with 30 ml guanidinium
buffer (4 M guanidinium isothiocyanate, 2.5 mM NaOAc pH 8.5i 0.8%
.beta.-mercaptoethanol). The mixture was filtered through four
layers of cheesecloth and centrifuged at 10,000 g at 4.degree. C.
for 30 minutes. The supernatant was then subjected to cesium
chloride density gradient centrifugation at 26,000 g for 20 hours.
The pelleted RNA was rinsed with 75% ethanol, resuspended in 600
.mu.l DEPC-treated water and the RNA precipitated at -70.degree. C.
with 0.75 ml 95% ethanol and 30 .mu.l of 3M NaOAc. Ten .mu.g of
either carnation or Arabidopsis RNA were fractionated on a 1.2%
denaturing formaldehyde agarose gel and transferred to a nylon
membrane. Randomly primed .sup.32P-dCTP-labelled full length
carnation lipase cDNA (SEQ ID NO:1) was used to probe the membrane
containing carnation RNA at 42.degree. C. overnight. Randomly
primed .sup.32P-dCTP-labelled full length Arabidopsis lipase cDNA
was used to probe the membrane containing Arabidopsis RNA at
42.degree. C. overnight. The membranes were then washed once in
1.times.SSC containing 0.1% SDS at room temperature for 15 minutes
and three times in 0.2.times.SSC containing 0.1% SDS at 65.degree.
C. for 15 minutes each. The membranes were exposed to x-ray film
overnight at -70.degree. C.
[0125] The results are shown in FIG. 9 (carnation) and FIG. 16
(Arabidopsis; lane 1, one day treatment; lane 2, two days
treatment; lane 3, three days treatment). As can be seen,
transcription of the carnation lipase and Arabidopsis lipase is
induced in flowers and/or leaves by ethylene.
Example 3
Generation of Tomato PCR Product Using Carnation Lipase Primers
[0126] A partial length senescence-induced lipase sequence from
tomato genomic DNA obtained from tomato leaves was generated by
nested PCR using a pair of oligonucleotide primers designed from
carnation senescence-induced lipase sequence. The 5' primer is a
19-mer having the sequence, 5'-CTCTAGACTATGAGTGGGT (SEQ ID NO:7);
the 3' primer is an 18-mer having the sequence,
CGACTGGCACAACCTCCA-3' (SEQ ID NO:8). Polymerase chain reaction,
using genomic tomato DNA was carried out as follows:
[0127] Reaction Components:
TABLE-US-00004 Genomic DNA 100 ng dNTP (10 mM each) 1 .mu.l
MgCl.sub.2 (5 mM) +10x buffer 5 .mu.l Primers 1 and 2 (20 .mu.M
each) 0.5 .mu.l Taq DNA polymerase 1.25 U Reaction volume 50
.mu.l
[0128] Reaction Parameters:
[0129] 94.degree. C. for 3 min
[0130] 94.degree. C./1 min, 48.degree. C./1 min, 72.degree. C./2
min, for 45 cycles
[0131] 72.degree. C. for 15 min.
[0132] The tomato partial length sequence obtained by PCR has the
nucleotide sequence, SEQ ID NO:6 (FIG. 10) and a deduced amino acid
sequence as set forth in FIG. 10. The partial length sequence
contains an intron (FIG. 10, lower case letters) interspersed
between two coding sequences. The tomato sequence contains the
conserved lipase consensus sequence, ITFTGHSLGA (SEQ ID NO:3).
[0133] The tomato sequence has 53.4% sequence identity with the
carnation senescence-induced lipase sequence and 43.5% sequence
identity with Arabidopsis lipase, the latter of which has 44.3%
sequence identity with the carnation sequence.
Example 4
[0134] Effect of Chilling on Cell Membrane Integrity in Tomato
Plants
[0135] Tomato plants were chilled for 48 hours at 7.degree. C. to
8.degree. C. and then returned to room temperature for 24 hours.
The effect of chilling on leaves was assessed by measuring the
amount of electrolyte leakage (Mhos).
[0136] Specifically, 1 g of leaf tissue was cut into a 50 ml tube,
quick-rinsed with distilled water, and 40 ml of deionized water
added. The tubes were capped and rotated at room temperature for 24
hours. Conductivity (.mu.Mho) readings reflecting electrolyte
leakage were taken at 6 and 24 hour intervals for control and
chill-injured leaf tissue. It is clear from FIG. 11 that
electrolyte leakage reflecting membrane damage is incurred during
the rewarming period in chill injured leaf tissue.
Northern Blot Analysis of RNA Obtained from Chilled Tomato
Leaves
[0137] Total RNA was isolated from the leaves 15 g of unchilled
tomato plants (control) and chilled tomato plants that had been
returned to room temperature for 0, 6 and 24 hours. RNA extraction
was carriedout as described in Example 3. 10 .mu.g of RNA from each
sample was separated on a 1.2% denaturing formaldehyde gel and
transferred to a nylon membrane. The membrane was probed with
.sup.32P-dCTP-labelled probe (SEQ ID NO:3) and then washed under
the same conditions as described in Example 3. The results are
shown in FIG. 12.
[0138] As can be seen from the autoradiograph (FIG. 12B) tomato
lipase gene expression is induced by chilling and the pattern of
gene induction correlates with increased electrolyte leakage in
chill injured leaves (FIG. 11).
Example 5
Generation of Transgenic Plants Expressing Senescence-Induced
Lipase Gene in Antisense Orientation
[0139] Agrobacteria were transformed with the binary vector,
pKYLX71, containing the full-length Arabidopsis senescence-induced
lipase gene expressed in antisense orientation under the regulation
of double 35S promoter. Arabidopsis plants were transformed with
these Agrobacteria by vacuum filtration, and transformed seeds from
the resultant T.sub.0 plants were selected on ampicillin.
[0140] T.sub.1 plants were grown under greenhouse conditions,
alongside wild-type Arabidopsis plants. Differences in leaf size,
overall plant size, seed yield and leaf senescence between
transgenic and wild-type plants were observed over time.
Differences are illustrated in FIGS. 17, 18, 19, and 20.
Example 6
Reduced Senescence-Induced Lipase Production in Transgenic
Plants
[0141] Total protein isolated from leaves of four week-old
Arabidopsis wild-type and corresponding transgenic plants made as
in example 5 was transferred to a nylon membrane and probed with
antibody raised against the Arabidopsis senescence-induced lipase
protein. The Western blot is shown in FIG. 21. (Lanes 1 and 2 were
loaded with 9 .mu.g of protein, and lanes 3 and 4 were loaded with
18 .mu.g of protein). The expression of the senescence-induced
lipase was reduced in transgenic plants.
Sequence CWU 1
1
2211537DNADianthus caryophyllusCDS(48)..(1388) 1gcacgagcca
ttccaaaact ccttacacca ctcaaaacta ttccaac atg gct gca 56 Met Ala Ala
1gaa gcc caa cct tta ggc ctc tca aag ccc ggc cca aca tgg ccc gaa
104Glu Ala Gln Pro Leu Gly Leu Ser Lys Pro Gly Pro Thr Trp Pro Glu
5 10 15ctc ctc ggg tcc aac gct tgg gcc ggg cta cta aac ccg ctc aac
gat 152Leu Leu Gly Ser Asn Ala Trp Ala Gly Leu Leu Asn Pro Leu Asn
Asp20 25 30 35gag ctc cgt gag ctc ctc cta cgc tgc ggg gac ttc tgc
cag gtg aca 200Glu Leu Arg Glu Leu Leu Leu Arg Cys Gly Asp Phe Cys
Gln Val Thr 40 45 50tac gac acc ttc ata aac gac cag aac tcg tcc tac
tgc ggc agc agc 248Tyr Asp Thr Phe Ile Asn Asp Gln Asn Ser Ser Tyr
Cys Gly Ser Ser 55 60 65cgc tac ggg aag gcg gac cta ctt cat aag acc
gcc ttc ccg ggg ggc 296Arg Tyr Gly Lys Ala Asp Leu Leu His Lys Thr
Ala Phe Pro Gly Gly 70 75 80gca gac cgg ttt gac gtg gtg gcg tac ttg
tac gcc act gcg aag gtc 344Ala Asp Arg Phe Asp Val Val Ala Tyr Leu
Tyr Ala Thr Ala Lys Val 85 90 95agc gtc cca gag gcg ttt ctg ctg aag
tcg agg tcg agg gag aag tgg 392Ser Val Pro Glu Ala Phe Leu Leu Lys
Ser Arg Ser Arg Glu Lys Trp100 105 110 115gat agg gaa tcg aat tgg
att ggg tat gtc gtg gtg tcg aat gac gag 440Asp Arg Glu Ser Asn Trp
Ile Gly Tyr Val Val Val Ser Asn Asp Glu 120 125 130acg agt cgg gtg
gcg gga cga agg gag gtg tat gtg gtg tgg aga ggg 488Thr Ser Arg Val
Ala Gly Arg Arg Glu Val Tyr Val Val Trp Arg Gly 135 140 145act tgt
agg gat tat gag tgg gtt gat gtt ctt ggt gct caa ctt gag 536Thr Cys
Arg Asp Tyr Glu Trp Val Asp Val Leu Gly Ala Gln Leu Glu 150 155
160tct gct cat cct ttg tta cgc act caa caa act act cat gtt gaa aag
584Ser Ala His Pro Leu Leu Arg Thr Gln Gln Thr Thr His Val Glu Lys
165 170 175gtg gaa aat gag gaa aag aag agc att cat aaa tca agt tgg
tac gac 632Val Glu Asn Glu Glu Lys Lys Ser Ile His Lys Ser Ser Trp
Tyr Asp180 185 190 195tgt ttc aat atc aac cta cta ggt tcc gcg tcc
aaa gac aaa gga aaa 680Cys Phe Asn Ile Asn Leu Leu Gly Ser Ala Ser
Lys Asp Lys Gly Lys 200 205 210gga agc gac gac gac gat gat gac gac
ccc aaa gtg atg caa ggt tgg 728Gly Ser Asp Asp Asp Asp Asp Asp Asp
Pro Lys Val Met Gln Gly Trp 215 220 225atg aca ata tac aca tcg gag
gat ccc aaa tca ccc ttc aca aaa cta 776Met Thr Ile Tyr Thr Ser Glu
Asp Pro Lys Ser Pro Phe Thr Lys Leu 230 235 240agt gca aga aca caa
ctt cag acc aaa ctc aaa caa cta atg aca aaa 824Ser Ala Arg Thr Gln
Leu Gln Thr Lys Leu Lys Gln Leu Met Thr Lys 245 250 255tac aaa gac
gaa acc cta agc ata aca ttc gcc ggt cac agc cta ggc 872Tyr Lys Asp
Glu Thr Leu Ser Ile Thr Phe Ala Gly His Ser Leu Gly260 265 270
275gcg aca cta tca gtc gtg agc gcc ttc gac ata gtg gag aat ctc acg
920Ala Thr Leu Ser Val Val Ser Ala Phe Asp Ile Val Glu Asn Leu Thr
280 285 290acc gag atc cca gtc acg gcc gtg gtc ttc ggg tgc cca aaa
gta ggc 968Thr Glu Ile Pro Val Thr Ala Val Val Phe Gly Cys Pro Lys
Val Gly 295 300 305aac aaa aaa ttc caa caa ctc ttc gac tcg tac cca
aac cta aat gtc 1016Asn Lys Lys Phe Gln Gln Leu Phe Asp Ser Tyr Pro
Asn Leu Asn Val 310 315 320ctc cat gta agg aat gtc atc gac ctg atc
cct ctg tat ccc gtg aaa 1064Leu His Val Arg Asn Val Ile Asp Leu Ile
Pro Leu Tyr Pro Val Lys 325 330 335ctc atg ggt tac gtg aac ata gga
atc gag ctg gag atc gac tcg agg 1112Leu Met Gly Tyr Val Asn Ile Gly
Ile Glu Leu Glu Ile Asp Ser Arg340 345 350 355aag tcg acc ttt cta
aag gac tcg aaa aac ccg agt gat tgg cat aat 1160Lys Ser Thr Phe Leu
Lys Asp Ser Lys Asn Pro Ser Asp Trp His Asn 360 365 370ttg caa gca
ata ttg cat gtt gta agt ggt tgg cat ggg gtt aag ggg 1208Leu Gln Ala
Ile Leu His Val Val Ser Gly Trp His Gly Val Lys Gly 375 380 385gag
ttt aag gtt gta aat aag aga agt gtt gca ttg gtt aat aag tca 1256Glu
Phe Lys Val Val Asn Lys Arg Ser Val Ala Leu Val Asn Lys Ser 390 395
400tgt gat ttt ctt aag gaa gaa tgt ttg gtt cct cca gct tgg tgg gtt
1304Cys Asp Phe Leu Lys Glu Glu Cys Leu Val Pro Pro Ala Trp Trp Val
405 410 415gtg cag aac aaa ggg atg gtt ttg aat aag gat ggt gag tgg
gtt ttg 1352Val Gln Asn Lys Gly Met Val Leu Asn Lys Asp Gly Glu Trp
Val Leu420 425 430 435gct cct cct gag gaa gat cct act cct gaa ttt
gat tgataatatt 1398Ala Pro Pro Glu Glu Asp Pro Thr Pro Glu Phe Asp
440 445tcatcatgtt ttatattttt ataaatttta ctaaatttac atgacaattt
atgggactaa 1458gttacttatt tatatgttta ttatatttga aatgtgtttt
aagttacata aaattgcaat 1518tagttttaaa aaaaaaaaa 15372447PRTDianthus
caryophyllus 2Met Ala Ala Glu Ala Gln Pro Leu Gly Leu Ser Lys Pro
Gly Pro Thr1 5 10 15Trp Pro Glu Leu Leu Gly Ser Asn Ala Trp Ala Gly
Leu Leu Asn Pro 20 25 30Leu Asn Asp Glu Leu Arg Glu Leu Leu Leu Arg
Cys Gly Asp Phe Cys 35 40 45Gln Val Thr Tyr Asp Thr Phe Ile Asn Asp
Gln Asn Ser Ser Tyr Cys 50 55 60Gly Ser Ser Arg Tyr Glu Lys Ala Asp
Leu Leu His Lys Thr Ala Phe65 70 75 80Pro Gly Gly Ala Asp Arg Phe
Asp Val Val Ala Tyr Leu Tyr Ala Thr 85 90 95Ala Lys Val Ser Val Pro
Glu Ala Phe Leu Leu Lys Ser Arg Ser Arg 100 105 110Glu Lys Trp Asp
Arg Glu Ser Asn Trp Ile Gly Tyr Val Val Val Ser 115 120 125Asn Asp
Glu Thr Ser Arg Val Ala Gly Arg Arg Glu Val Tyr Val Val 130 135
140Trp Arg Gly Thr Cys Arg Asp Tyr Glu Trp Val Asp Val Leu Gly
Ala145 150 155 160Gln Leu Glu Ser Ala His Pro Leu Leu Arg Thr Gln
Gln Thr Thr His 165 170 175Val Glu Lys Val Glu Asn Glu Glu Lys Lys
Ser Ile His Lys Ser Ser 180 185 190Trp Tyr Asp Cys Phe Asn Ile Asn
Leu Leu Gly Ser Ala Ser Lys Asp 195 200 205Lys Gly Lys Gly Ser Asp
Asp Asp Asp Asp Asp Asp Pro Lys Val Met 210 215 220Gln Gly Trp Met
Thr Ile Tyr Thr Ser Glu Asp Pro Lys Ser Pro Phe225 230 235 240Thr
Lys Leu Ser Ala Arg Thr Gln Leu Gln Thr Lys Leu Lys Gln Leu 245 250
255Met Thr Lys Tyr Lys Asp Glu Thr Leu Ser Ile Thr Phe Ala Gly His
260 265 270Ser Leu Gly Ala Thr Leu Ser Val Val Ser Ala Phe Asp Ile
Val Glu 275 280 285Asn Leu Thr Thr Glu Ile Pro Val Thr Ala Val Val
Phe Gly Cys Pro 290 295 300Lys Val Gly Asn Lys Lys Phe Gln Gln Leu
Phe Asp Ser Tyr Pro Asn305 310 315 320Leu Asn Val Leu His Val Arg
Asn Val Ile Asp Leu Ile Pro Leu Tyr 325 330 335Pro Val Lys Leu Met
Gly Tyr Val Asn Ile Gly Ile Glu Leu Glu Ile 340 345 350Asp Ser Arg
Lys Ser Thr Phe Leu Lys Asp Ser Lys Asn Pro Ser Asp 355 360 365Trp
His Asn Leu Gln Ala Ile Leu His Val Val Ser Gly Trp His Gly 370 375
380Val Lys Gly Glu Phe Lys Val Val Asn Lys Arg Ser Val Ala Leu
Val385 390 395 400Asn Lys Ser Cys Asp Phe Leu Lys Glu Glu Cys Leu
Val Pro Pro Ala 405 410 415Trp Trp Val Val Gln Asn Lys Gly Met Val
Leu Asn Lys Asp Gly Glu 420 425 430Trp Val Leu Ala Pro Pro Glu Glu
Asp Pro Thr Pro Glu Phe Asp 435 440 445310PRTLycopersicon
esculentum 3Ile Thr Phe Thr Gly His Ser Leu Gly Ala1 5
10410PRTDianthus caryophyllus 4Ile Thr Phe Ala Gly His Ser Leu Gly
Ala1 5 10519DNADianthus caryophyllus 5acctactagg ttccgcgtc
196923DNALycopersicon esculentumCDS(6)...(513)CDS(845)...(921)
6ctcta gac tat gag tgg gtg gat gtt tta ggt gct cgt cct gat tca 47
Asp Tyr Glu Trp Val Asp Val Leu Gly Ala Arg Pro Asp Ser 1 5 10gct
gac tct ctt ctt cat cct aaa tct ctc caa aaa ggc att aac aac 95Ala
Asp Ser Leu Leu His Pro Lys Ser Leu Gln Lys Gly Ile Asn Asn15 20 25
30aag aac gat gag gat gag gac gag gac gag gat gag atc aaa gta atg
143Lys Asn Asp Glu Asp Glu Asp Glu Asp Glu Asp Glu Ile Lys Val Met
35 40 45gat ggg tgg ctt aag atc tac gtc tca agt aac ccg aag tcg tct
ttc 191Asp Gly Trp Leu Lys Ile Tyr Val Ser Ser Asn Pro Lys Ser Ser
Phe 50 55 60acg aga cta agt gca aga gaa caa ctt caa gca aag att gaa
aag tta 239Thr Arg Leu Ser Ala Arg Glu Gln Leu Gln Ala Lys Ile Glu
Lys Leu 65 70 75aga aat gag tat aaa gat gag aat ttg agc ata act ttt
aca ggg cat 287Arg Asn Glu Tyr Lys Asp Glu Asn Leu Ser Ile Thr Phe
Thr Gly His 80 85 90agt ctt ggt gct agc tta gct gtt tta gct tca ttt
gat gtg gtt gaa 335Ser Leu Gly Ala Ser Leu Ala Val Leu Ala Ser Phe
Asp Val Val Glu95 100 105 110aat ggt gtg cca gtt gat att cca gta
tct gca att gta ttt ggt agt 383Asn Gly Val Pro Val Asp Ile Pro Val
Ser Ala Ile Val Phe Gly Ser 115 120 125cca caa gtt ggg aat aag gca
ttc aat gaa aga atc aag aaa ttc tca 431Pro Gln Val Gly Asn Lys Ala
Phe Asn Glu Arg Ile Lys Lys Phe Ser 130 135 140aac ttg aat atc tta
cat gtt aag aac aag att gat ctc att acc ctt 479Asn Leu Asn Ile Leu
His Val Lys Asn Lys Ile Asp Leu Ile Thr Leu 145 150 155tac cca agt
gct ctg ttt ggg tat gtg aat tca g gtattgaagg 523Tyr Pro Ser Ala Leu
Phe Gly Tyr Val Asn Ser 160 165aaaagatcat tacaattttg agctagattt
ctcatatcgt cacactcaac taacagttat 583tatatgagaa agtcactttc
tttgtgaaaa aattgaatca acttttggaa ataatagtag 643ttgagtgacc
atatgagaaa tcaacactct actaacttta tgctataaga gaataggtta
703aggtccatat gtttatactg tctgttcaat tagaatcata aaagtattac
tagttaaatt 763tgactacaat cttatgtaga catgaataaa ataaatccta
cataaataag atttcctaca 823actttaatga ttcttcaaca g gt ata gag cta gtc
atc gat agc aga aag 873 Gly Ile Glu Leu Val Ile Asp Ser Arg Lys 170
175tct ccg agt tta aag gat tca aaa gac atg ggc gac tgg cac aac ctc
921Ser Pro Ser Leu Lys Asp Ser Lys Asp Met Gly Asp Trp His Asn
Leu180 185 190 195ca 923719DNAArtificial SequenceDescription of
Artificial Sequence Synthetic Primer 7ctctagacta tgagtgggt
19818DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 8cgactggcac aacctcca 18910PRTArabidopsis sp. 9Ile
Thr Thr Cys Gly His Ser Leu Gly Ala1 5 101010PRTIpomoea nil 10Ile
Thr Val Thr Gly His Ser Leu Gly Ser1 5 1011447PRTDianthus
caryophyllus 11Met Ala Ala Glu Ala Gln Pro Leu Gly Leu Ser Lys Pro
Gly Pro Thr1 5 10 15Trp Pro Glu Leu Leu Gly Ser Asn Ala Trp Ala Gly
Leu Leu Asn Pro 20 25 30Leu Asn Asp Glu Leu Arg Glu Leu Leu Leu Arg
Cys Gly Asp Phe Cys 35 40 45Gln Val Thr Tyr Asp Thr Phe Ile Asn Asp
Gln Asn Ser Ser Tyr Cys 50 55 60Gly Ser Ser Arg Tyr Gly Lys Ala Asp
Leu Leu His Lys Thr Ala Phe65 70 75 80Pro Gly Gly Ala Asp Arg Phe
Asp Val Val Ala Tyr Leu Tyr Ala Thr 85 90 95Ala Lys Val Ser Val Pro
Glu Ala Phe Leu Leu Lys Ser Arg Ser Arg 100 105 110Glu Lys Trp Asp
Arg Glu Ser Asn Trp Ile Gly Tyr Val Val Val Ser 115 120 125Asn Asp
Glu Thr Ser Arg Val Ala Gly Arg Arg Glu Val Tyr Val Val 130 135
140Trp Arg Gly Thr Cys Arg Asp Tyr Glu Trp Val Asp Val Leu Gly
Ala145 150 155 160Gln Leu Glu Ser Ala His Pro Leu Leu Arg Thr Gln
Gln Thr Thr His 165 170 175Val Glu Lys Val Glu Asn Glu Glu Lys Lys
Ser Ile His Lys Ser Ser 180 185 190Trp Tyr Asp Cys Phe Asn Ile Asn
Leu Leu Gly Ser Ala Ser Lys Asp 195 200 205Lys Gly Lys Gly Ser Asp
Asp Asp Asp Asp Asp Asp Pro Lys Val Met 210 215 220Gln Gly Trp Met
Thr Ile Tyr Thr Ser Glu Asp Pro Lys Ser Pro Phe225 230 235 240Thr
Lys Leu Ser Ala Arg Thr Gln Leu Gln Thr Lys Leu Lys Cys Leu 245 250
255Met Thr Lys Tyr Lys Asp Glu Thr Leu Ser Ile Thr Phe Ala Gly His
260 265 270Ser Leu Gly Ala Thr Leu Ser Val Val Ser Ala Phe Asp Ile
Val Glu 275 280 285Asn Leu Thr Thr Glu Ile Pro Val Thr Ala Val Val
Phe Gly Cys Pro 290 295 300Lys Val Gly Asn Lys Lys Phe Gln Gln Leu
Phe Asp Ser Tyr Pro Asn305 310 315 320Leu Asn Val Leu His Val Arg
Asn Val Ile Asp Leu Ile Pro Leu Tyr 325 330 335Pro Val Lys Leu Met
Gly Tyr Val Asn Ile Gly Ile Glu Leu Glu Ile 340 345 350Asp Ser Arg
Lys Ser Thr Phe Leu Lys Asp Ser Lys Asn Pro Ser Asp 355 360 365Trp
His Asn Leu Gln Ala Ile Leu His Val Val Ser Gly Trp His Gly 370 375
380Val Lys Gly Glu Phe Lys Val Val Asn Lys Arg Ser Val Ala Leu
Val385 390 395 400Asn Lys Ser Cys Asp Phe Leu Lys Glu Glu Cys Leu
Val Pro Pro Ala 405 410 415Trp Trp Val Val Gln Asn Lys Gly Met Val
Leu Asn Lys Asp Gly Glu 420 425 430Trp Val Leu Ala Pro Pro Glu Glu
Asp Pro Thr Pro Glu Phe Asp 435 440 44512418PRTArabidopsis thaliana
12Met Lys Arg Lys Lys Lys Glu Glu Glu Glu Glu Lys Leu Ile Val Thr1
5 10 15Arg Glu Phe Ala Lys Arg Trp Arg Asp Leu Ser Gly Gln Asn His
Trp 20 25 30Lys Gly Met Leu Gln Pro Leu Asp Gln Asp Leu Arg Glu Tyr
Ile Ile 35 40 45His Tyr Gly Glu Met Ala Gln Ala Gly Tyr Asp Thr Phe
Asn Ile Asn 50 55 60Thr Glu Ser Gln Phe Ala Gly Ala Ser Ile Tyr Ser
Arg Lys Asp Phe65 70 75 80Phe Ala Lys Val Gly Leu Glu Ile Ala His
Pro Tyr Thr Lys Tyr Lys 85 90 95Val Thr Lys Phe Ile Tyr Ala Thr Ser
Asp Ile His Val Pro Glu Ser 100 105 110Phe Leu Leu Phe Pro Ile Ser
Arg Glu Gly Trp Ser Lys Glu Ser Asn 115 120 125Trp Met Gly Tyr Val
Ala Val Thr Asp Asp Gln Gly Thr Ala Leu Leu 130 135 140Gly Arg Arg
Asp Ile Val Val Ser Trp Arg Gly Ser Val Gln Pro Leu145 150 155
160Glu Trp Val Glu Asp Phe Glu Phe Gly Leu Val Asn Ala Ile Lys Ile
165 170 175Phe Gly Glu Arg Asn Asp Gln Val Gln Ile His Gln Gly Trp
Tyr Ser 180 185 190Ile Tyr Met Ser Gln Asp Glu Arg Ser Pro Phe Thr
Lys Thr Asn Ala 195 200 205Arg Asp Gln Val Leu Arg Glu Val Gly Arg
Leu Leu Glu Lys Tyr Lys 210 215 220Asp Glu Glu Val Ser Ile Thr Ile
Cys Gly His Ser Leu Gly Ala Ala225 230 235 240Leu Ala Thr Asp Ser
Ala Ile Asp Ile Val Ala Asn Gly Tyr Asn Arg 245 250 255Pro Lys Ser
Arg Pro Asp Lys Ser Cys Pro Val Thr Ala Phe Val Phe 260 265 270Ala
Ser Pro Arg Val Gly Asp Ser Asp Phe Arg Lys Leu Phe Ser Gly
275 280 285Leu Glu Asp Ile Arg Val Leu Arg Thr Arg Asn Leu Phe Asp
Val Ile 290 295 300Pro Ile Tyr Pro Pro Ile Gly Tyr Ser Glu Val Gly
Asp Glu Phe Pro305 310 315 320Ile Asp Thr Arg Lys Ser Pro Tyr Met
Lys Ser Pro Gly Asn Leu Ala 325 330 335Thr Phe His Cys Leu Glu Gly
Tyr Leu His Gly Val Ala Gly Thr Gln 340 345 350Gly Thr Asn Lys Ala
Asp Leu Phe Arg Leu Asp Val Glu Arg Ala Ile 355 360 365Gly Leu Val
Asn Lys Ser Val Asp Gly Leu Lys Asp Glu Cys Met Val 370 375 380Pro
Gly Lys Trp Arg Val Leu Lys Asn Lys Gly Ala Gln Gln Asp Asp385 390
395 400Gly Ser Trp Glu Leu Val Asp His Glu Ile Asp Asp Asn Glu Asp
Leu 405 410 415Asp Phe13401PRTIpomoea sp. 13Met Ser Gly Ile Ala Lys
Arg Trp Lys Val Leu Ser Gly Ser Asp Asn1 5 10 15Trp Glu Gly Leu Leu
Glu Pro Leu Asp Ser Asp Leu Arg Arg Tyr Leu 20 25 30Ile His Tyr Gly
Thr Met Val Ser Pro Ala Thr Asp Ser Phe Ile Asn 35 40 45Glu Ala Ala
Ser Lys Asn Val Gly Leu Pro Arg Tyr Ala Arg Arg Asn 50 55 60Leu Leu
Ala Asn Cys Gly Leu Val Lys Gly Asn Pro Phe Lys Tyr Glu65 70 75
80Val Thr Lys Tyr Phe Tyr Ala Pro Ser Thr Ile Pro Leu Pro Asp Glu
85 90 95Gly Tyr Asn Val Arg Ala Thr Arg Ala Asp Ala Val Leu Lys Glu
Ser 100 105 110Asn Trp Asn Gly Tyr Val Ala Val Ala Thr Asp Glu Gly
Lys Val Ala 115 120 125Leu Gly Arg Arg Asp Ile Leu Ile Val Trp Arg
Gly Thr Ile Arg Lys 130 135 140Ser Glu Trp Asn Glu Asn Leu Thr Phe
Trp Phe Val Lys Ala Pro Leu145 150 155 160Phe Phe Gly Gln Asn Ser
Asp Pro Leu Val His Lys Gly Trp Tyr Asp 165 170 175Met Tyr Thr Thr
Ile Asn Gln Asp Ser Gln Leu Asn Glu Lys Ser Ala 180 185 190Arg Asp
Gln Ile Arg Glu Glu Val Ala Arg Leu Val Glu Leu Tyr Lys 195 200
205Asp Glu Asp Ile Ser Ile Thr Val Thr Gly His Ser Leu Gly Ser Ser
210 215 220Met Ala Thr Leu Asn Ala Val Asp Leu Ala Ala Asn Pro Ile
Asn Asn225 230 235 240Asn Lys Asn Ile Leu Val Thr Ala Phe Leu Tyr
Ala Ser Pro Lys Val 245 250 255Gly Asp Glu Asn Phe Lys Asn Val Ile
Ser Asn Gln Gln Asn Leu Arg 260 265 270Ala Leu Arg Ile Ser Asp Val
Asn Asp Ile Val Thr Ala Val Pro Pro 275 280 285Phe Gly Trp Lys Glu
Cys Asp Asn Thr Ala Ile Leu Tyr Gly Asp Val 290 295 300Gly Val Gly
Leu Val Ile Asp Ser Lys Lys Ser His Tyr Leu Lys Pro305 310 315
320Asp Phe Pro Asn Leu Ser Thr His Asp Leu Met Leu Tyr Met His Ala
325 330 335Ile Asp Gly Tyr Gln Gly Ser Gln Gly Gly Phe Glu Arg Gln
Glu Asp 340 345 350Phe Asp Leu Ala Lys Val Asn Lys Tyr Gly Asp Tyr
Leu Lys Ala Glu 355 360 365Tyr Pro Ile Pro Ile Gly Trp Phe Asn Ile
Lys Asp Lys Gly Met Gln 370 375 380Gln Asp Asp Gly Asn Tyr Ile Leu
Asp Asp His Glu Val Asp Lys Thr385 390 395
400Phe14448PRTArabidopsis thaliana 14Met Thr Ala Glu Asp Ile Arg
Arg Arg Asp Lys Lys Thr Glu Glu Glu1 5 10 15Arg Arg Leu Arg Asp Thr
Trp Arg Lys Ile Gln Gly Glu Asp Asp Trp 20 25 30Ala Gly Leu Met Asp
Pro Met Asp Pro Ile Leu Arg Ser Glu Leu Ile 35 40 45Arg Tyr Gly Glu
Met Ala Gln Ala Cys Tyr Asp Ala Phe Asp Phe Asp 50 55 60Pro Ala Ser
Lys Tyr Cys Gly Thr Ser Arg Phe Thr Arg Leu Glu Phe65 70 75 80Phe
Asp Ser Leu Gly Met Ile Asp Ser Gly Tyr Glu Val Ala Arg Tyr 85 90
95Leu Tyr Ala Thr Ser Asn Ile Asn Leu Pro Asn Phe Phe Ser Lys Ser
100 105 110Arg Trp Ser Lys Val Trp Ser Lys Asn Ala Asn Trp Met Gly
Tyr Val 115 120 125Ala Val Ser Asp Asp Glu Thr Ser Arg Asn Arg Leu
Gly Arg Arg Asp 130 135 140Ile Ala Ile Ala Trp Arg Gly Thr Val Thr
Lys Leu Glu Trp Ile Ala145 150 155 160Asp Leu Lys Asp Tyr Leu Lys
Pro Val Thr Glu Asn Lys Ile Arg Cys 165 170 175Pro Asp Pro Ala Val
Lys Val Glu Ser Gly Phe Leu Asp Leu Tyr Thr 180 185 190Asp Lys Asp
Thr Thr Cys Lys Phe Ala Arg Phe Ser Ala Arg Glu Gln 195 200 205Ile
Leu Thr Glu Val Lys Arg Leu Val Glu Glu His Gly Asp Asp Asp 210 215
220Asp Ser Asp Leu Ser Ile Thr Val Thr Gly His Ser Leu Gly Gly
Ala225 230 235 240Leu Ala Ile Leu Ser Ala Tyr Asp Ile Ala Glu Met
Arg Leu Asn Arg 245 250 255Ser Lys Lys Gly Lys Val Ile Pro Val Thr
Ala Val Leu Thr Tyr Gly 260 265 270Gly Pro Arg Val Gly Asn Val Arg
Phe Arg Glu Arg Met Glu Glu Leu 275 280 285Gly Val Lys Val Met Arg
Val Val Asn Val His Asp Val Val Pro Lys 290 295 300Ser Pro Gly Leu
Phe Leu Asn Glu Ser Arg Pro His Ala Leu Met Lys305 310 315 320Ile
Ala Glu Gly Leu Pro Trp Cys Tyr Ser His Val Gly Glu Glu Leu 325 330
335Ala Leu Asp His Gln Asn Ser Pro Phe Leu Lys Pro Ser Val Asp Val
340 345 350Ser Thr Ala His Asn Leu Glu Ala Met Leu His Leu Leu Asp
Gly Tyr 355 360 365His Gly Lys Gly Glu Arg Phe Val Leu Ser Ser Gly
Arg Asp His Ala 370 375 380Leu Val Asn Lys Ala Ser Asp Phe Leu Lys
Glu His Leu Gln Ile Pro385 390 395 400Pro Phe Trp Arg Gln Asp Ala
Asn Lys Gly Met Val Arg Asn Ser Glu 405 410 415Gly Arg Trp Ile Gln
Ala Glu Arg Leu Arg Phe Glu Asp His His Ser 420 425 430Pro Asp Ile
His His His Leu Ser Gln Leu Arg Leu Asp His Pro Cys 435 440
445151167DNAArabidopsis sp.CDS(1)..(1044) 15cgg gtc gac cca cgc gtc
cgc gaa aac gct tcc gac tac gag gtt gta 48Arg Val Asp Pro Arg Val
Arg Glu Asn Ala Ser Asp Tyr Glu Val Val1 5 10 15aac ttc ctc tac gcc
aca gct cgt gtt tct ctc ccc gaa ggt ttg ctt 96Asn Phe Leu Tyr Ala
Thr Ala Arg Val Ser Leu Pro Glu Gly Leu Leu 20 25 30ctc caa tca caa
tca aga gat tct tgg gac cgt gag tct aac tgg ttt 144Leu Gln Ser Gln
Ser Arg Asp Ser Trp Asp Arg Glu Ser Asn Trp Phe 35 40 45ggc tac att
gct gtc acg tct gat gaa cgg tct aag gct tta gga cgc 192Gly Tyr Ile
Ala Val Thr Ser Asp Glu Arg Ser Lys Ala Leu Gly Arg 50 55 60cgt gag
atc tat ata gct ttg aga gga acg agc agg aac tat gag tgg 240Arg Glu
Ile Tyr Ile Ala Leu Arg Gly Thr Ser Arg Asn Tyr Glu Trp65 70 75
80gtc aat gtt ttg ggt gct agg cca act tca gct gac ccc ttg ctg cac
288Val Asn Val Leu Gly Ala Arg Pro Thr Ser Ala Asp Pro Leu Leu His
85 90 95gga ccc gag cag gat ggt tct ggt ggt gta gtt gaa ggt acg act
ttt 336Gly Pro Glu Gln Asp Gly Ser Gly Gly Val Val Glu Gly Thr Thr
Phe 100 105 110gat agt gac agt gaa gat gaa gaa ggg tgt aag gtg atg
ctc ggg tgg 384Asp Ser Asp Ser Glu Asp Glu Glu Gly Cys Lys Val Met
Leu Gly Trp 115 120 125ctc aca atc tat act tct aat cac ccc gaa tcg
aaa ttc act aag ctg 432Leu Thr Ile Tyr Thr Ser Asn His Pro Glu Ser
Lys Phe Thr Lys Leu 130 135 140agt cta cgg tca cag ttg tta gcc aag
atc aag gag ctt ctg ttg aag 480Ser Leu Arg Ser Gln Leu Leu Ala Lys
Ile Lys Glu Leu Leu Leu Lys145 150 155 160tat aag gac gag aaa ccg
agc att gtg ttg act gga cat agc ttg gga 528Tyr Lys Asp Glu Lys Pro
Ser Ile Val Leu Thr Gly His Ser Leu Gly 165 170 175cct aca gag gct
gtt ctg gcc gcc tat gat ata gct gag aac ggt tcc 576Pro Thr Glu Ala
Val Leu Ala Ala Tyr Asp Ile Ala Glu Asn Gly Ser 180 185 190agt gat
gat gtt ccg gtc act gct ata gtc ttt ggt tgt cca cag gta 624Ser Asp
Asp Val Pro Val Thr Ala Ile Val Phe Gly Cys Pro Gln Val 195 200
205gga aac aag gag ttc aga gac gaa gta atg agt cac aag aac tta aag
672Gly Asn Lys Glu Phe Arg Asp Glu Val Met Ser His Lys Asn Leu Lys
210 215 220atc ctc cat gta agg aac acg att gat ctc tta act cga tac
cca ggg 720Ile Leu His Val Arg Asn Thr Ile Asp Leu Leu Thr Arg Tyr
Pro Gly225 230 235 240gga ctt tta ggg tat gtg gac ata gga ata aac
ttt gtg atc gat aca 768Gly Leu Leu Gly Tyr Val Asp Ile Gly Ile Asn
Phe Val Ile Asp Thr 245 250 255aag aag tca ccg ttc cta agc gat tca
agg aat cca ggg gat tgg cat 816Lys Lys Ser Pro Phe Leu Ser Asp Ser
Arg Asn Pro Gly Asp Trp His 260 265 270aat ctt cag gcg atg tta cat
gtt gta gct gga tgg aat ggg aag aaa 864Asn Leu Gln Ala Met Leu His
Val Val Ala Gly Trp Asn Gly Lys Lys 275 280 285gga gag ttt aaa ctg
atg gtt aag aga agt att gca tta gtg aac aag 912Gly Glu Phe Lys Leu
Met Val Lys Arg Ser Ile Ala Leu Val Asn Lys 290 295 300tca tgc gag
ttc ttg aaa gct gag tgt ttg gtg cca gga tct tgg tgg 960Ser Cys Glu
Phe Leu Lys Ala Glu Cys Leu Val Pro Gly Ser Trp Trp305 310 315
320gta gag aag aac aaa gga ctg atc aag aac gaa gat ggt gaa tgg gtt
1008Val Glu Lys Asn Lys Gly Leu Ile Lys Asn Glu Asp Gly Glu Trp Val
325 330 335ctt gct ccc gtt gaa gaa gaa cct gta cct gaa ttc
taaattgtat 1054Leu Ala Pro Val Glu Glu Glu Pro Val Pro Glu Phe 340
345ttctgtattt ttctctaagg tcatgataaa tcaacaataa gcagttcaac
tatgtgatga 1114aaagacccaa gttattatat tgatatgagt ttatgagata
aaaaaaaaaa aaa 116716348PRTArabidopsis sp. 16Arg Val Asp Pro Arg
Val Arg Glu Asn Ala Ser Asp Tyr Glu Val Val1 5 10 15Asn Phe Leu Tyr
Ala Thr Ala Arg Val Ser Leu Pro Glu Gly Leu Leu 20 25 30Leu Gln Ser
Gln Ser Arg Asp Ser Trp Asp Arg Glu Ser Asn Trp Phe 35 40 45Gly Tyr
Ile Ala Val Thr Ser Asp Glu Arg Ser Lys Ala Leu Gly Arg 50 55 60Arg
Glu Ile Tyr Ile Ala Leu Arg Gly Thr Ser Arg Asn Tyr Glu Trp65 70 75
80Val Asn Val Leu Gly Ala Arg Pro Thr Ser Ala Asp Pro Leu Leu His
85 90 95Gly Pro Glu Gln Asp Gly Ser Gly Gly Val Val Glu Gly Thr Thr
Phe 100 105 110Asp Ser Asp Ser Glu Asp Glu Glu Gly Cys Lys Val Met
Leu Gly Trp 115 120 125Leu Thr Ile Tyr Thr Ser Asn His Pro Glu Ser
Lys Phe Thr Lys Leu 130 135 140Ser Leu Arg Ser Gln Leu Leu Ala Lys
Ile Lys Glu Leu Leu Leu Lys145 150 155 160Tyr Lys Asp Glu Lys Pro
Ser Ile Val Leu Thr Gly His Ser Leu Gly 165 170 175Pro Thr Glu Ala
Val Leu Ala Ala Tyr Asp Ile Ala Glu Asn Gly Ser 180 185 190Ser Asp
Asp Val Pro Val Thr Ala Ile Val Phe Gly Cys Pro Gln Val 195 200
205Gly Asn Lys Glu Phe Arg Asp Glu Val Met Ser His Lys Asn Leu Lys
210 215 220Ile Leu His Val Arg Asn Thr Ile Asp Leu Leu Thr Arg Tyr
Pro Gly225 230 235 240Gly Leu Leu Gly Tyr Val Asp Ile Gly Ile Asn
Phe Val Ile Asp Thr 245 250 255Lys Lys Ser Pro Phe Leu Ser Asp Ser
Arg Asn Pro Gly Asp Trp His 260 265 270Asn Leu Gln Ala Met Leu His
Val Val Ala Gly Trp Asn Gly Lys Lys 275 280 285Gly Glu Phe Lys Leu
Met Val Lys Arg Ser Ile Ala Leu Val Asn Lys 290 295 300Ser Cys Glu
Phe Leu Lys Ala Glu Cys Leu Val Pro Gly Ser Trp Trp305 310 315
320Val Glu Lys Asn Lys Gly Leu Ile Lys Asn Glu Asp Gly Glu Trp Val
325 330 335Leu Ala Pro Val Glu Glu Glu Pro Val Pro Glu Phe 340
34517195PRTLycopersicon esculentum 17Asp Tyr Glu Trp Val Asp Val
Leu Gly Ala Arg Pro Asp Ser Ala Asp1 5 10 15Ser Leu Leu His Pro Lys
Ser Leu Gln Lys Gly Ile Asn Asn Lys Asn 20 25 30Asp Glu Asp Glu Asp
Glu Asp Glu Asp Glu Ile Lys Val Met Asp Gly 35 40 45Trp Leu Lys Ile
Tyr Val Ser Ser Asn Pro Lys Ser Ser Phe Thr Arg 50 55 60Leu Ser Ala
Arg Glu Gln Leu Gln Ala Lys Ile Glu Lys Leu Arg Asn65 70 75 80Glu
Tyr Lys Asp Glu Asn Leu Ser Ile Thr Phe Thr Gly His Ser Leu 85 90
95Gly Ala Ser Leu Ala Val Leu Ala Ser Phe Asp Val Val Glu Asn Gly
100 105 110Val Pro Val Asp Ile Pro Val Ser Ala Ile Val Phe Gly Ser
Pro Gln 115 120 125Val Gly Asn Lys Ala Phe Asn Glu Arg Ile Lys Lys
Phe Ser Asn Leu 130 135 140Asn Ile Leu His Val Lys Asn Lys Ile Asp
Leu Ile Thr Leu Tyr Pro145 150 155 160Ser Ala Leu Phe Gly Tyr Val
Asn Ser Gly Ile Glu Leu Val Ile Asp 165 170 175Ser Arg Lys Ser Pro
Ser Leu Lys Asp Ser Lys Asp Met Gly Asp Trp 180 185 190His Asn Leu
195181344DNAArabidopsis thalianaCDS(1)..(1341) 18atg acg gcg gaa
gat att cgc cgg cga gat aaa aaa acc gaa gaa gaa 48Met Thr Ala Glu
Asp Ile Arg Arg Arg Asp Lys Lys Thr Glu Glu Glu1 5 10 15aga aga cta
aga gac acg tgg cgt aag atc caa gga gaa gac gat tgg 96Arg Arg Leu
Arg Asp Thr Trp Arg Lys Ile Gln Gly Glu Asp Asp Trp 20 25 30gcc ggg
tta atg gat cca atg gat cca att ctt aga tcg gag cta atc 144Ala Gly
Leu Met Asp Pro Met Asp Pro Ile Leu Arg Ser Glu Leu Ile 35 40 45cgt
tac ggc gaa atg gct caa gct tgt tac gac gct ttc gat ttc gat 192Arg
Tyr Gly Glu Met Ala Gln Ala Cys Tyr Asp Ala Phe Asp Phe Asp 50 55
60ccc gct tcc aaa tac tgc ggc acc tcc agg ttc acg cga ctc gag ttc
240Pro Ala Ser Lys Tyr Cys Gly Thr Ser Arg Phe Thr Arg Leu Glu
Phe65 70 75 80ttc gat tct ctc gga atg atc gat tcc ggt tac gag gtg
gcg cgt tac 288Phe Asp Ser Leu Gly Met Ile Asp Ser Gly Tyr Glu Val
Ala Arg Tyr 85 90 95ctc tac gcg acg tcg aac atc aat ctc ccg aac ttc
ttc tcg aaa tcg 336Leu Tyr Ala Thr Ser Asn Ile Asn Leu Pro Asn Phe
Phe Ser Lys Ser 100 105 110cgg tgg tct aaa gtc tgg agc aaa aac gct
aat tgg atg gga tac gtc 384Arg Trp Ser Lys Val Trp Ser Lys Asn Ala
Asn Trp Met Gly Tyr Val 115 120 125gcc gtt tca gac gac gaa acg tct
cgt aac cga ctc ggc cgc cgt gat 432Ala Val Ser Asp Asp Glu Thr Ser
Arg Asn Arg Leu Gly Arg Arg Asp 130 135 140atc gcg att gcg tgg aga
gga acc gtt acg aaa ctt gaa tgg atc gcg 480Ile Ala Ile Ala Trp Arg
Gly Thr Val Thr Lys Leu Glu Trp Ile Ala145 150 155 160gat cta aag
gat tat tta aaa ccg gta acc gaa aac aag atc cga tgc 528Asp Leu Lys
Asp Tyr Leu Lys Pro Val Thr Glu Asn Lys Ile Arg Cys 165 170 175ccc
gac ccg gcc gtt aaa gtc gaa tcc gga ttc tta gat ctc tac act 576Pro
Asp Pro Ala Val Lys Val Glu Ser Gly Phe Leu Asp Leu Tyr Thr 180 185
190gac aaa gac aca acc tgc aaa ttc gcg aga ttc tca gcg cgt gaa cag
624Asp Lys Asp Thr Thr Cys Lys Phe Ala Arg Phe Ser Ala Arg Glu Gln
195 200 205att tta
acg gag gtg aaa cgg tta gtg gaa gaa cac ggc gac gac gat 672Ile Leu
Thr Glu Val Lys Arg Leu Val Glu Glu His Gly Asp Asp Asp 210 215
220gat tcc gat tta agc atc acc gtg acg gga cac agt ctc ggc ggc gcg
720Asp Ser Asp Leu Ser Ile Thr Val Thr Gly His Ser Leu Gly Gly
Ala225 230 235 240tta gcg ata tta agc gcg tac gat ata gcg gag atg
aga ttg aat cgg 768Leu Ala Ile Leu Ser Ala Tyr Asp Ile Ala Glu Met
Arg Leu Asn Arg 245 250 255agt aag aaa ggg aaa gtg att ccg gtg acg
gtg ttg aca tac gga gga 816Ser Lys Lys Gly Lys Val Ile Pro Val Thr
Val Leu Thr Tyr Gly Gly 260 265 270ccg aga gtt ggg aac gtt agg ttt
agg gag agg atg gag gaa ttg gga 864Pro Arg Val Gly Asn Val Arg Phe
Arg Glu Arg Met Glu Glu Leu Gly 275 280 285gtg aaa gtg atg aga gta
gtg aat gtt cac gac gtg gtt ccc aag tcg 912Val Lys Val Met Arg Val
Val Asn Val His Asp Val Val Pro Lys Ser 290 295 300ccg gga ttg ttt
ttg aac gag agt aga cct cac gcg ctg atg aag ata 960Pro Gly Leu Phe
Leu Asn Glu Ser Arg Pro His Ala Leu Met Lys Ile305 310 315 320gcg
gag ggg ttg ccg tgg tgt tat agc cac gtg ggg gag gag ctg gcg 1008Ala
Glu Gly Leu Pro Trp Cys Tyr Ser His Val Gly Glu Glu Leu Ala 325 330
335ttg gat cat cag aac tcg ccg ttt ctt aaa cct tcc gtt gat gtt tct
1056Leu Asp His Gln Asn Ser Pro Phe Leu Lys Pro Ser Val Asp Val Ser
340 345 350act gct cat aat ctt gaa gct atg ctt cat tta ctt gac ggg
tat cat 1104Thr Ala His Asn Leu Glu Ala Met Leu His Leu Leu Asp Gly
Tyr His 355 360 365gga aaa gga gag aga ttt gtg ctg tcg agt ggg aga
gac cat gcg cta 1152Gly Lys Gly Glu Arg Phe Val Leu Ser Ser Gly Arg
Asp His Ala Leu 370 375 380gtg aac aaa gcg tcg gac ttt ttg aaa gag
cat tta caa att cca ccg 1200Val Asn Lys Ala Ser Asp Phe Leu Lys Glu
His Leu Gln Ile Pro Pro385 390 395 400ttt tgg cgt caa gac gcg aat
aaa gga atg gtt cgg aac agt gaa ggt 1248Phe Trp Arg Gln Asp Ala Asn
Lys Gly Met Val Arg Asn Ser Glu Gly 405 410 415cgt tgg att caa gcc
gag cgt ctc cgt ttt gag gat cat cat tct cct 1296Arg Trp Ile Gln Ala
Glu Arg Leu Arg Phe Glu Asp His His Ser Pro 420 425 430gat atc cac
cac cat ctc tct cag ctc cgt ctt gat cat cct tgt taa 1344Asp Ile His
His His Leu Ser Gln Leu Arg Leu Asp His Pro Cys 435 440
44519447PRTArabidopsis thaliana 19Met Thr Ala Glu Asp Ile Arg Arg
Arg Asp Lys Lys Thr Glu Glu Glu1 5 10 15Arg Arg Leu Arg Asp Thr Trp
Arg Lys Ile Gln Gly Glu Asp Asp Trp 20 25 30Ala Gly Leu Met Asp Pro
Met Asp Pro Ile Leu Arg Ser Glu Leu Ile 35 40 45Arg Tyr Gly Glu Met
Ala Gln Ala Cys Tyr Asp Ala Phe Asp Phe Asp 50 55 60Pro Ala Ser Lys
Tyr Cys Gly Thr Ser Arg Phe Thr Arg Leu Glu Phe65 70 75 80Phe Asp
Ser Leu Gly Met Ile Asp Ser Gly Tyr Glu Val Ala Arg Tyr 85 90 95Leu
Tyr Ala Thr Ser Asn Ile Asn Leu Pro Asn Phe Phe Ser Lys Ser 100 105
110Arg Trp Ser Lys Val Trp Ser Lys Asn Ala Asn Trp Met Gly Tyr Val
115 120 125Ala Val Ser Asp Asp Glu Thr Ser Arg Asn Arg Leu Gly Arg
Arg Asp 130 135 140Ile Ala Ile Ala Trp Arg Gly Thr Val Thr Lys Leu
Glu Trp Ile Ala145 150 155 160Asp Leu Lys Asp Tyr Leu Lys Pro Val
Thr Glu Asn Lys Ile Arg Cys 165 170 175Pro Asp Pro Ala Val Lys Val
Glu Ser Gly Phe Leu Asp Leu Tyr Thr 180 185 190Asp Lys Asp Thr Thr
Cys Lys Phe Ala Arg Phe Ser Ala Arg Glu Gln 195 200 205Ile Leu Thr
Glu Val Lys Arg Leu Val Glu Glu His Gly Asp Asp Asp 210 215 220Asp
Ser Asp Leu Ser Ile Thr Val Thr Gly His Ser Leu Gly Gly Ala225 230
235 240Leu Ala Ile Leu Ser Ala Tyr Asp Ile Ala Glu Met Arg Leu Asn
Arg 245 250 255Ser Lys Lys Gly Lys Val Ile Pro Val Thr Val Leu Thr
Tyr Gly Gly 260 265 270Pro Arg Val Gly Asn Val Arg Phe Arg Glu Arg
Met Glu Glu Leu Gly 275 280 285Val Lys Val Met Arg Val Val Asn Val
His Asp Val Val Pro Lys Ser 290 295 300Pro Gly Leu Phe Leu Asn Glu
Ser Arg Pro His Ala Leu Met Lys Ile305 310 315 320Ala Glu Gly Leu
Pro Trp Cys Tyr Ser His Val Gly Glu Glu Leu Ala 325 330 335Leu Asp
His Gln Asn Ser Pro Phe Leu Lys Pro Ser Val Asp Val Ser 340 345
350Thr Ala His Asn Leu Glu Ala Met Leu His Leu Leu Asp Gly Tyr His
355 360 365Gly Lys Gly Glu Arg Phe Val Leu Ser Ser Gly Arg Asp His
Ala Leu 370 375 380Val Asn Lys Ala Ser Asp Phe Leu Lys Glu His Leu
Gln Ile Pro Pro385 390 395 400Phe Trp Arg Gln Asp Ala Asn Lys Gly
Met Val Arg Asn Ser Glu Gly 405 410 415Arg Trp Ile Gln Ala Glu Arg
Leu Arg Phe Glu Asp His His Ser Pro 420 425 430Asp Ile His His His
Leu Ser Gln Leu Arg Leu Asp His Pro Cys 435 440
4452027DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 20atgtctagag aagatattgc gcggcga
272128DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 21gatgagctcg acgaagctga gagagatg
28225PRTArtificial SequenceDescription of Artificial Sequence
Synthetic peptide motif 22Gly His Ser Leu Gly1 5
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