U.S. patent application number 13/773395 was filed with the patent office on 2013-06-20 for method for production and use of mite group 1 proteins.
This patent application is currently assigned to MERCK PATENT GMBH. The applicant listed for this patent is Merck Patent GmbH. Invention is credited to Elaine A. Best, Martin J. McDermott.
Application Number | 20130157310 13/773395 |
Document ID | / |
Family ID | 22574301 |
Filed Date | 2013-06-20 |
United States Patent
Application |
20130157310 |
Kind Code |
A1 |
Best; Elaine A. ; et
al. |
June 20, 2013 |
Method for Production and Use of Mite Group 1 Proteins
Abstract
The present invention includes a method to produce a recombinant
mite Group 1 protein in a methyltrophic yeast or an Escherichia
coli microorganism. The present invention also relates to a
recombinant mite Group 1 protein obtained by such a method, such a
recombinant protein being able to selectively bind IgE or cause
proliferation of a T cell that proliferates in response to a native
mite Group 1 protein. Also included in the present invention is the
use of such a recombinant mite Group 1 protein to detect mite
allergy or to reduce an allergic response to a mite Group 1
protein. The present invention also includes novel mite Group 1
nucleic acid molecules, proteins, recombinant molecules, and
recombinant cells, as well as uses thereof.
Inventors: |
Best; Elaine A.; (Fort
Collins, CO) ; McDermott; Martin J.; (Boulder,
CO) |
|
Applicant: |
Name |
City |
State |
Country |
Type |
Merck Patent GmbH; |
Darmstadt |
|
DE |
|
|
Assignee: |
MERCK PATENT GMBH
Darmstadt
DE
|
Family ID: |
22574301 |
Appl. No.: |
13/773395 |
Filed: |
February 21, 2013 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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11542659 |
Oct 2, 2006 |
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13773395 |
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10110353 |
Sep 9, 2002 |
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PCT/US00/28204 |
Oct 12, 2000 |
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11542659 |
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60159841 |
Oct 15, 1999 |
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Current U.S.
Class: |
435/69.3 ;
435/254.2; 435/254.22; 435/254.23 |
Current CPC
Class: |
A61K 39/00 20130101;
C07K 14/43531 20130101; A61P 37/00 20180101; C07K 16/18
20130101 |
Class at
Publication: |
435/69.3 ;
435/254.2; 435/254.23; 435/254.22 |
International
Class: |
C07K 16/18 20060101
C07K016/18 |
Claims
1. A method to produce a recombinant protein comprising a
recombinant mite Group 1 protein or a fragment thereof comprising
the steps of: (a) culturing a methyltrophic yeast microorganism
transformed with a nucleic acid molecule encoding said recombinant
mite Group 1 protein or fragment; and (b) recovering said
recombinant mite Group 1 protein or fragment from said
methyltrophic yeast microorganism; wherein said recombinant mite
Group 1 protein or fragment is selected from the group consisting
of: Dermatophagoides farinae, Dermatophagoides pteronyssinus, and
Euroglyphus maynei recombinant mite Group 1 proteins (Der f 1, Der
p 1 and Eur m 1) or a fragment thereof and has a function selected
from the group consisting of: selectively binding IgE and causing
proliferation of a T cell that proliferates in response to a native
mite Group 1 protein selected from the group consisting of Der f 1,
Der p 1 and Eur m 1 and said nucleic acid molecule consists of a
nucleic acid sequence selected from the group consisting of: SEQ ID
NO:1, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:13, SEQ ID NO:16, SEQ ID
NO:19, SEQ ID NO:22, SEQ ID NO:25, SEQ ID NO:28, SEQ ID NO:31, SEQ
ID NO:34, SEQ ID NO:37, SEQ ID NO:40, SEQ ID NO:43, SEQ ID NO:64,
SEQ ID NO:69, SEQ ID NO:76, SEQ ID NO:81, SEQ ID NO:86, and SEQ ID
NO:91 or a fragment thereof and wherein said nucleic acid molecule
is optionally fused to a signal sequence.
2. The method of claim 1, wherein said methyltrophic yeast
microorganism is of a genus selected from the group consisting of a
Pichia microorganism, a Hansenula microorganism, a Torulopsis
microorganism, and a Candida microorganism.
3. The method of claim 1, wherein said methyltrophic yeast
microorganism is of a species selected from the group consisting of
Pichia pastoris, Pichia acaciae, Pichia anomala, Pichia augusta,
Pichia capsulata, Pichia fabianii, Pichia farinosa, Pichia
guilliermondii, Pichia methanolica, Pichia norvegensis, Pichia
pinus, Pichia stipitis, and Hansenula polymorpha.
4. The method of claim 1, wherein said methyltrophic yeast
microorganism is Pichia pastoris.
5.-6. (canceled)
7. The method of claim 1, wherein said nucleic acid molecule
encodes a recombinant mite Group 1 protein selected from the group
consisting of a pro-form of a recombinant mite Group 1 protein and
a mature form of a recombinant mite Group 1 protein.
8. The method of claim 1, wherein said nucleic acid molecule
encodes a recombinant mite Group 1 protein fused to a S. cerevisiae
alpha factor signal sequence.
9.-11. (canceled)
12. The method of claim 1, wherein said recombinant mite Group 1
protein is selected from the group consisting of: (a) a recombinant
mite Group 1 protein consisting of an amino acid sequence selected
from the group consisting of SEQ ID NO:2, SEQ ID NO:5, SEQ ID NO:8,
SEQ ID NO:14, SEQ ID NO:17, SEQ ID NO:20, SEQ ID NO:23, SEQ ID
NO:26, SEQ ID NO:29, SEQ ID NO:32, SEQ ID NO:35, SEQ ID NO:38, SEQ
ID NO:41, SEQ ID NO:44, SEQ ID NO:65, SEQ ID NO:70, SEQ ID NO:77,
SEQ ID NO:82, SEQ ID NO:87, and SEQ ID NO:92; and (b) a recombinant
mite Group 1 protein that is a fragment of any of said proteins of
(a), wherein said fragment has a function selected from the group
consisting of selectively binding IgE and causing proliferation of
a T cell that proliferates in response to a native mite Group 1
protein.
13. The method of claim 1, wherein said recombinant mite Group 1
protein is selected from the group consisting of a pro-form of said
recombinant mite Group 1 protein and a mature form of said
recombinant mite Group 1 protein.
14. The method of claim 1, wherein said recombinant mite Group 1
protein is secreted by said methyltrophic yeast microorganism.
15. The method of claim 1, wherein said recombinant mite Group 1
protein binds to IgE of at least about 70% of serum samples
comprising IgE that selectively bind to a native mite Group 1
protein.
16.-40. (canceled)
41. A methyltrophic yeast microorganism comprising a nucleic acid
molecule encoding a mite Group 1 protein fragment thereof wherein
said nucleic acid molecule consists of a nucleic acid sequence
selected from the group consisting of: SEQ ID NO:1, SEQ ID NO:4,
SEQ ID NO:7, SEQ ID NO:13, SEQ ID NO:16, SEQ ID NO:19, SEQ ID
NO:22, SEQ ID NO:25, SEQ ID NO:28, SEQ ID NO:31, SEQ ID NO:34, SEQ
ID NO:37, SEQ ID NO:40, SEQ ID NO:43, SEQ ID NO:64, SEQ ID NO:69,
SEQ ID NO:76, SEQ ID NO:81, SEQ ID NO:86, and SEQ ID NO:91 or a
fragment thereof, said recombinant mite Group 1 protein or fragment
is selected from the group consisting of: Dermatophagoides farinae,
Dermatophagoides pteronyssinus, and Euroglyphus maynei recombinant
mite Group 1 proteins (Der f 1, Der p 1 and Eur m 1) or a fragment
thereof and has a function selected from the group consisting of:
selectively binding IgE and causing proliferation of a T cell that
proliferates in response to a native mite Group 1 protein selected
from the group consisting of Der f 1, Der p 1 and Eur m 1, said
nucleic acid molecule being operatively linked to a transcription
control sequence and wherein said nucleic acid molecule is
optionally fused to a signal sequence.
42. (canceled)
43. The methyltrophic yeast microorganism of claim 41, wherein said
nucleic acid molecule consists of a nucleic acid sequence selected
from the group consisting of: SEQ ID NO:1, SEQ ID NO:4, SEQ ID
NO:7, SEQ ID NO:13, SEQ ID NO:16, SEQ ID NO:19, SEQ ID NO:22, SEQ
ID NO:25, SEQ ID NO:28, SEQ ID NO:31, SEQ ID NO:34, SEQ ID NO:37,
SEQ ID NO:40, SEQ ID NO:43, SEQ ID NO:64, SEQ ID NO:69, SEQ ID
NO:76, SEQ ID NO:81, SEQ ID NO:86, and SEQ ID NO:91.
44. (canceled)
45. The methyltrophic yeast microorganism of claim 41, wherein said
recombinant mite Group 1 protein is selected from the group
consisting of: (a) a recombinant mite Group 1 protein consisting of
an amino acid sequence selected from the group consisting of: SEQ
ID NO:2, SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:14, SEQ ID NO:17, SEQ
ID NO:20, SEQ ID NO:23, SEQ ID NO:26, SEQ ID NO:29, SEQ ID NO:32,
SEQ ID NO:35. SEQ ID NO:38, SEQ ID NO:41, SEQ ID NO:44, SEQ ID
NO:65, SEQ ID NO:70, SEQ ID NO:77, SEQ ID NO:82, SEQ ID NO:87, and
SEQ ID NO:92; and (b) a recombinant mite Group 1 protein that is a
fragment of any of said proteins of (a), wherein said fragment has
a function selected from the group consisting of selectively
binding IgE and causing proliferation of a T cell that proliferates
in response to a native mite Group 1 protein.
46. The methyltrophic yeast microorganism of claim 41, wherein said
methyltrophic yeast microorganism is of a genus selected from the
group consisting of a Pichia microorganism, a Hansenula
microorganism, a Torulopsis microorganism, and a Candida
microorganism.
47. The methyltrophic yeast microorganism of claim 46, wherein said
Pichia microorganism is P. pastoris.
48. The methyltrophic yeast microorganism of claim 47, wherein said
nucleic acid molecule encodes a recombinant mite Group 1 protein
fused to a S. cerevisiae alpha factor signal sequence.
49.-56. (canceled)
57. A method to produce a recombinant protein comprising a
recombinant mite Group 1 protein or a fragment thereof, comprising
the steps of: (a) culturing a methyltrophic yeast microorganism
transformed with a nucleic acid molecule encoding said recombinant
mite Group 1 protein or fragment; and (b) recovering said
recombinant mite Group 1 protein or fragment from said
methyltrophic yeast microorganism; wherein said recombinant mite
Group 1 protein or fragment is selected from the group consisting
of: Dermatophagoides farinae, Dermatophagoides pteronyssinus, and
Euroglyphus maynei recombinant mite Group 1 proteins (Der f 1, Derp
1 and Eur m 1) or a fragment thereof and has a function selected
from the group consisting of: selectively binding IgE and causing
proliferation of a T cell that proliferates in response to a native
mite Group 1 protein selected from the group consisting of Der f 1,
Der p 1 and Eur m 1 and said nucleic acid molecule hybridizes under
stringent conditions with a nucleic acid sequence selected from the
group consisting of: SEQ ID NO:1, SEQ ID NO:4, SEQ ID NO:7, SEQ ID
NO:13, SEQ ID NO:16, SEQ ID NO:19, SEQ ID NO:22, SEQ ID NO:25, SEQ
ID NO:28, SEQ ID NO:31, SEQ ID NO:34, SEQ ID NO:37, SEQ ID NO:40,
SEQ ID NO:43, SEQ ID NO:64, SEQ ID NO:69, SEQ ID NO:76, SEQ ID
NO:81, SEQ ID NO:86, and SEQ ID NO:91 or a fragment thereof and
wherein said nucleic acid molecule is optionally fused to a signal
sequence.
58. A method to produce a recombinant protein comprising a
recombinant mite Group 1 protein or a fragment thereof, comprising
the steps of: (a) culturing a methyltrophic yeast microorganism
transformed with a nucleic acid molecule encoding said recombinant
mite Group 1 protein or fragment; and (b) recovering said
recombinant mite Group 1 protein or fragment from said
methyltrophic yeast microorganism; wherein said recombinant mite
Group 1 protein or fragment is selected from the group consisting
of: Dermatophagoides farinae, Dermatophagoides pteronyssinus, and
Euroglyphus maynei recombinant mite Group 1 proteins (Der f 1, Der
p 1 and Eur m 1) or a fragment thereof and has a function selected
from the group consisting of: selectively binding IgE and causing
proliferation of a T cell that proliferates in response to a native
mite Group 1 protein selected from the group consisting of Der f 1,
Der p 1 and Eur m 1 and said nucleic acid molecule having a
sequence identity of at least 95% with a nucleic acid sequence
selected from the group consisting of: SEQ ID NO: 1, SEQ ID NO:4,
SEQ ID NO:7, SEQ ID NO:13, SEQ ID NO:16, SEQ ID NO:19, SEQ ID
NO:22, SEQ ID NO:25, SEQ ID NO:28, SEQ ID NO:31, SEQ ID NO:34, SEQ
ID NO:37, SEQ ID NO:40, SEQ ID NO:43, SEQ ID NO:64, SEQ ID NO:69,
SEQ ID NO:76, SEQ ID NO:81, SEQ ID NO:86, and SEQ ID NO:91 or a
fragment thereof and wherein said nucleic acid molecule is
optionally fused to a signal sequence.
Description
[0001] This application claims priority to U.S. Provisional Patent
Application Ser. No. 60/159,841, filed Oct. 15, 1999
FIELD OF THE INVENTION
[0002] The present invention relates to a method of expressing an
active recombinant mite Group 1 protein in a methyltrophic yeast
microorganism or in Escherichia coli. The present invention also
relates to use of such a protein to detect mite allergy or to
reduce an allergic response.
BACKGROUND OF THE INVENTION
[0003] The cross-linking of mast cell-bound IgE upon binding of IgE
to allergens induces Type I allergic diseases such as atopic
dermatitis and atopic asthma. Diseases related to allergy and atopy
affect a significant percentage of the population, including up to
20% of humans, and are increasing every year. A significant
proportion of type I allergic patients are mite allergic. For
example, based on skin tests, at least 75% of the estimated 50
million asthmatics in the United States are mite allergic. As such,
mite proteins comprise an important allergen in type I allergic
disease. The house dust mites Dermatophagoides farinae and
Dermatophagoides pteronyssinus are the most common mites in the
United States. These mites produce several classes, or groups, of
allergens, one of which is known as Group 1 proteins, which are
also found in other mite species. For example, considerable
cross-reactivity has been found among Blomia tropicalis, D. farinae
and Lepidoglyphus destructor allergens; see, for example, Colloff,
1993, J Allergy Clin Immunol 91, 1042-1050. Additionally, Group 1
proteins have been found in D. pteronyssinus, D. farinae,
Euroglyphus maynei, and L. destructor; see, for example, Thomas et
al, 1998, Allergy 53, 821-832.
[0004] Mite Group 1 proteins share significant homology with a
family of cysteine proteases including actinidin, papain, cathepsin
H and cathepsin B. These Group 1 proteins are commonly found in the
feces of mites and are thought to function as digestive enzymes in
the mite intestine. Group 1 proteins from different mites are
highly homologous, approximately 25-kilodalton (kD) secretory
glycoproteins, that are synthesized by the cell as a
pre-pro-protein that is processed to a mature form. D. farinae, D.
pteronyssinus, and E. maynei Group 1 proteins, for example, share
about 80% identity. In particular, Group 1 proteins from D. farinae
and D. pteronyssinus, also referred to as Der f 1 and Der p 1
proteins, respectively, show extensive cross-reactivity in binding
IgE and IgG. In human populations that are mite allergic,
approximately 80% to 90% have IgE that is reactive to Group 1
proteins; see Thomas, 1996, Adv Exp Med Biol 409, 85-93.
[0005] Since Group 1 proteins are important in mite allergy, it is
desirable to have sufficient quantities of these proteins for uses
related to diagnosing and treating diseases that are related to
mite allergy. To obtain the amounts of Group 1 proteins necessary
for these purposes, it is desirable to use recombinant expression
systems, since the amount of Group 1 proteins in mites is
relatively small and the purification process to obtain native
Group 1 proteins is a difficult, multi-step process. Nucleic acid
molecules encoding Der f 1 and Der p 1 proteins were isolated a
number of years (see, for example, U.S. Pat. No. 5,433,948, issued
Jul. 18, 1995, by Thomas et al; U.S. Pat. No. 5,552,142, issued
Sep. 3, 1996, by Thomas et al; U.S. Pat. No. 5,770,202, issued Jun.
23, 1998, by Thomas et al; U.S. Pat. No. 5,773,002, issued Jun. 30,
1998, by Thomas et al; PCT Patent Publication No. WO 88/10297,
published Dec. 29, 1988, by Thomas et al; PCT Patent Publication
No. WO 92/04445, published Mar. 19, 1992, by Thomas et al); and
researchers have tried to express Group 1 proteins in recombinant
expression systems. Until the present invention, however, there has
been only limited success in producing an active, easily purified
recombinant mite Group 1 protein. For example, although researchers
have tried to produce active, fully functional recombinant Der f 1
and Der p 1 proteins in E. coli, insect cells, and Saccharomyces
cerevisiae, to date, none of these efforts has yielded an easily
purified Group 1 protein that binds to IgE in mite-allergic
patients in a manner equivalent to a native Group 1 protein.
[0006] Using E. coli, researchers expressed a recombinant Der p 1
protein as a fusion protein with glutathione S transferase. The
resulting recombinant protein was produced in very low yields, at
about 200 micrograms soluble protein per liter of culture medium.
Furthermore the GST-Der p 1 fusion protein exhibited only about 50%
of the IgE reactivity of the native protein; see Chua et al, 1992,
J Allergy Clin Immunol 89, 95-102. Moreover, this protein was
expressed using a cDNA encoding the mature form, not the pro-form.
The inventors are not aware of any reports of successful expression
in E. coli of an active Der p 1 protein encoded by the
pro-form.
[0007] Using a baculovirus expression system in insect cells, Shoji
et al, 1996, Biosci Biotech Biochem 60, 621-625, and Shoji et al,
1997, Biosci Biotech Biochem 61, 1668-1673, reported production of
a recombinant Der f 1 protein with IgE binding activity comparable
to the native protein, but their process required an additional
post-purification step of either acid or enzymatic treatment to
cleave the pro-form to a mature form. This cleavage step was
necessary because the Der f 1 pro-form had only 20% of the IgE
reactivity of the native protein. To avoid the step of acid
proteolysis, Shoji et al. converted a glutamate at the
carboxyl-terminus of the "pro" region of the pro-form to a lysine
residue. This genetically engineered version of Der f 1 protein
could then be cleaved with lysylendopeptidase to the mature form
under conditions that did not result in the cleavage of internal
lysines. However, this process is disadvantageous, especially at
large scale, for producing recombinant proteins. Controlling a
relatively non-specific protease cleavage step to cleave at only
one specific site out of several possible sites is inherently
difficult. In addition, use of a protease adds steps and cost to
the purification process.
[0008] Using the yeast S. cerevisiae, Chua et al, ibid., produced
recombinant Der p 1 protein. Although the Der p 1 protein was
expressed as the pro-form in this system, the protein was not
secreted by S. cerevisiae. As such, the resulting insoluble protein
was purified using several steps, including solubilization,
renaturation and affinity chromatography; such a process resulted
in low yields of only about 1 milligram protein per liter of yeast
culture. Furthermore, the recovered S. cerevisiae-expressed Der p 1
proenzyme exhibited only about 80% of the activity of native Der p
1 protein: Of 11 sera tested that were reactive with the native
protein, only 9 were reactive with the S. cerevisiae expressed Der
p 1 protein.
[0009] Thus, there remains a need in the art for an expression
system that produces recombinant mite Group 1 proteins that exhibit
activity equivalent to that of native mite Group 1 proteins.
Preferably such a system would allow for easy and cost-effective
recovery of such recombinant proteins.
SUMMARY OF THE INVENTION
[0010] This invention relates to the surprising discovery that
soluble, fully active mite Group 1 proteins can be expressed by a
methyltrophic yeast microorganism. Also surprising is the finding
that a methyltrophic yeast microorganism expresses a pro-form of a
mite Group 1 protein that is efficiently processed and secreted,
resulting in soluble, mature, fully active mite Group 1 protein in
the culture medium.
[0011] This invention also relates to the unexpected discovery that
a pro-form of a mite Group 1 protein allergen can be expressed in
Escherichia coli and refolded such that the renatured protein has
activity that is nearly equivalent to a native Group 1 mite
protein. Not only did this pro-form exhibit higher activity than
previously reported for an E. coli-produced mature form of such a
protein, but this is apparently the first report of an active
pro-form of a Group 1 mite protein.
[0012] The present invention provides a method to produce a
recombinant mite Group 1 protein, wherein the protein has a
function of selectively binding IgE that binds to a native mite
Group 1 protein and/or of causing proliferation of a T cell that
proliferates in response to a native mite Group 1 protein, such a
method including the steps of (a) culturing a methyltrophic yeast
microorganism transformed with a nucleic acid molecule that encodes
a mite Group 1 protein, and (b) recovering the expressed protein.
Preferably such a protein is secreted into the culture the medium
and has an IgE binding activity that is substantially equivalent to
that of a native mite Group 1 protein. Preferred methyltrophic
yeast microorganisms include those of the genera Pichia, Hansenula,
Torulopsis, and Candida, with those of the genus Pichia being
particularly preferred. The present invention also includes a mite
Group 1 protein produced by such a method.
[0013] The present invention also provides a method to produce a
recombinant mite Group 1 protein, wherein the protein has a
function of selectively binding IgE that binds to a native mite
Group 1 protein and/or of causing proliferation of a T cell that
proliferates in response to a native mite Group 1 protein, such a
method comprising the steps of (a) culturing an E. coli
microorganism transformed with a nucleic acid molecule encoding
such a mite Group 1 protein, wherein the protein forms an inclusion
body in the E. coli microorganism, (b) isolating such an inclusion
body from such an E. coli microorganism, and (c) recovering the
mite Group 1 protein from such an inclusion body, wherein the
recovered mite Group 1 protein binds to IgE of at least about 70%
of serum samples comprising IgE that selectively bind to a native
mite Group 1 protein. Such a method preferably includes a refolding
step. The present invention also includes a mite Group 1 protein
produced by such a method.
[0014] Also included in the present invention is a method to detect
mite allergy in an animal. Such a method includes the steps of (a)
contacting an isolated mite Group 1 protein of the present
invention with a putative IgE-containing substance under conditions
suitable to form a complex between the mite Group 1 protein and IgE
and (b) determining the presence of IgE reactive with the mite
Group 1 protein by detecting the complex, wherein presence of
reactive IgE is indicative of mite allergy in the animal. The
present invention also includes a kit for detection of mite allergy
in an animal. Such a kit includes a mite Group 1 protein of the
present invention and a means for detecting IgE that selectively
binds to a mite Group 1 protein.
[0015] One embodiment of the present invention is a composition
that includes a mite Group 1 protein of the present invention and
an excipient. Also included is a method to use such a composition
to reduce an allergic response to a mite Group 1 protein in a
mite-allergic animal. Such a method includes the step of
administering such a composition to such an animal.
[0016] Another embodiment of the present invention includes a
methyltrophic yeast microorganism that includes a nucleic acid
molecules encoding a mite Group 1 protein operatively linked to a
transcription control sequence.
[0017] The present invention also includes isolated novel nucleic
acid molecules, recombinant molecules, and recombinant
microorganisms that comprise at least one of the following nucleic
acid sequences: SEQ ID NO:28, SEQ ID NO:30, SEQ ID NO:31, SEQ ID
NO:33, SEQ ID NO:34, SEQ ID NO:36, SEQ ID NO:37, SEQ ID NO:39, SEQ
ID NO:40, SEQ ID NO:42, SEQ ID NO:43, and SEQ ID NO:45. Also
included in the present invention is an isolated protein having an
amino acid sequence of SEQ ID NO:38 or SEQ ID NO:41, as well as
nucleic acid molecules, recombinant molecules, and recombinant
microorganisms encoding such protein(s).
DETAILED DESCRIPTION OF THE INVENTION
[0018] The present invention provides a method to produce a
recombinant mite Group 1 protein that has at least one of the
following functions (i.e., activities, properties): (a) selectively
binding IgE that binds to a native mite Group 1 protein; and (b)
causing proliferation of a T cell that proliferates in response to
a native mite Group 1 protein. In one embodiment, the method
includes the steps of (a) culturing a methyltrophic yeast
microorganism transformed with a nucleic acid molecule that encodes
a mite Group 1 protein, and (b) recovering the recombinant protein
from the methyltrophic yeast microorganism. In another embodiment,
the method includes the steps of (a) culturing an E. coli
microorganism transformed with a nucleic acid molecule encoding a
mite Group 1 protein, wherein the protein forms an inclusion body
in the E. coli microorganism, (b) isolating such an inclusion body
from such an E. coli microorganism, and (c) recovering the mite
Group 1 protein from such an inclusion body, wherein the recovered
mite Group 1 protein binds to IgE of at least about 70% of serum
samples comprising IgE that selectively bind to a native mite Group
1 protein. The present invention also includes a recombinant mite
Group 1 protein produced by either of these methods. Such a protein
is referred to as a recombinant mite Group 1 protein of the present
invention, a mite Group 1 protein of the present invention, a Group
1 protein of the present invention, or a protein of the present
invention. Such a protein can be used in a variety of ways, such as
those disclosed herein. For example, a protein of the present
invention can be used to detect mite allergy in an animal,
including detection of an animal suffering from mite allergy or of
an animal susceptible to mite allergy. As another example, a
protein of the present invention can be used to reduce an allergic
response against a mite allergen (i.e., reduce mite allergy),
including prophylactic or therapeutic use. The present invention
also includes kits and compositions that include at least one
recombinant mite Group 1 protein of the present invention. The
present invention also includes mite Group 1 nucleic acid
molecules, recombinant molecules, recombinant microorganisms and
proteins, as disclosed herein.
[0019] As used herein, a mite refers to a minute arthropod of the
order Acarina, which includes a large assemblage of parasitic and
free-living organisms. For example, astigmatic mites (Astigmata)
are mostly involved in commensal, symbiotic, or ectoparasitic
relationships with other animals for at least part of their life
cycle. There are at least two major lineages of astigmatic mites:
Psoroptidia, which includes all species that are associated with
skin, feathers, fur, and hair, such as ectoparasitic feather mites
and skin parasites of mammals; and Pyroglyphidae, which includes
mite species that are parasites of birds and nest-dwelling
commensals, as well as those species found in house dust.
Allergen-producing astigmatic mites include Acarus siro,
Aleuroglyphus ovatus, Blomia kulagini, Blomia tropicalis,
Chortoglyphus arcuatus, Dermatophagoides farinae, Dermatophagoides
microceras, Dermatophagoides pteronyssinus, Euroglyphus maynei,
Glycyphagus domesticus, Gohieria fusca, Lepidoglyphus destructor,
Psoroptes ovis, Pterolichus obtusus, Sarcoptes scaiei, Tyrophagus
longior, and Tyrophagus putrescentiae. The main species of mite
found in house dust are D. farinae and D. pteronyssinus, which
together account for 80-90% of the total mite population generally
found in houses. Additionally, B. kulagini, B. tropicalis, E.
maynei, and T. longior are also found in houses. As such, any mite
is a suitable target for the products and methods of the present
invention. Preferred mites to target are of the genera Blomia,
Dermatophagoides, Euroglyphus, and Tyrophagus, with those of the
species B. kulagini, B. tropicalis, D. farinae, D. pteronyssinus,
E. maynei, and T. longior being more preferred. Particularly
preferred mites to target are those mites of the genus
Dermatophagoides, with those of the species D. farinae and D.
pteronyssinus being more preferred.
[0020] One embodiment of the present invention is a method to
produce a recombinant mite Group 1 protein, wherein the recombinant
protein has a function of selectively binding IgE that binds to
native Group 1 protein, and/or of causing proliferation of a T cell
that proliferates in response to a native mite Group 1 protein. It
is to be noted that the term "a" or "an" entity refers to one or
more of that entity; for example, a protein refers to one or more
proteins or at least one protein; as another example, a nucleic
acid molecule refers to one or more nucleic acid molecules or at
least one nucleic acid molecule. As such, the terms "a" or "an",
"one or more", and "at least one" can be used interchangeably
herein. It is also to be noted that the terms "comprising",
"including", and "having" can be used interchangeably herein.
According to the present invention, an isolated, or biologically
pure, protein or nucleic acid molecule is a protein or nucleic acid
molecule, respectively, that has been removed from its natural
milieu. As such, "isolated" and/or "biologically pure" do not
necessarily reflect the extent to which the protein or nucleic acid
molecule has been purified. An isolated protein or nucleic acid
molecule of the present invention can be obtained from its natural
source, can be produced using recombinant nucleic acid technology,
or can be produced by chemical synthesis.
[0021] A mite Group 1 protein refers to a Group 1 protein from
(including derived from) a species of mite. A recombinant mite
Group 1 protein of the present invention refers to a mite Group 1
protein produced using the techniques of recombinant nucleic acid
technology. A suitable recombinant mite Group 1 protein of the
present invention is a Group 1 protein from any species of mite
that is produced using recombinant nucleic acid techniques. Such
species include, but are not limited to, Acarus siro, Aleuroglyphus
ovatus, Blomia kulagini, Blomia tropicalis, Chortoglyphus arcuatus,
Dermatophagoides farinae, Dermatophagoides microceras,
Dermatophagoides pteronyssinus, Euroglyphus maynei, Glycyphagus
domesticus, Gohieria fusca, Lepidoglyphus destructor, Psoroptes
ovis, Pterolichus obtusus, Sarcoptes scaiei, Tyrophagus longior,
and Tyrophagus putrescentiae. Preferred mite Group 1 proteins of
the present invention include those of the genera Blomia,
Dermatophagoides, Euroglyphus, Lepidoglyphus, and Tyrophagus, with
those of the species B. kulagini, B. tropicalis, D. farinae, D.
microceras, D. pteronyssinus, E. maynei, L. destructor, and T.
longior being more preferred. Particularly preferred mite Group 1
proteins are Dermatophagoides and Euroglyphus maynei Group 1
proteins, with D. farinae, D. pteronyssinus, and E. maynei Group 1
proteins being even more preferred.
[0022] In one embodiment, mite Group 1 proteins include, but are
not limited to, mite proteins that share homology with mite
cysteine proteases having molecular weights of about 25 HD,
although such molecular weights may vary, for example due to
genetic differences between species or post-translation
modifications.
[0023] As used herein, an isolated mite Group 1 protein may be a
full-length protein or any homolog of such a protein. An isolated
mite Group 1 protein of the present invention, including a homolog,
can be identified in a straight-forward manner by the protein's
ability to perform at least one of the following functions: elicit
an immune response against, or to, a mite Group 1 protein, bind to
an IgE antibody (also referred to herein as IgE) reactive to a
native mite Group 1 protein, bind to one or more monoclonal
antibodies that are reactive to a native mite Group 1 protein,
and/or stimulate proliferation of a T cell that proliferates in
response to a native mite Group 1 protein. Examples of protein
homologs of the present invention include mite Group 1 proteins of
the present invention in which amino acids have been deleted (e.g.
a truncated version of the protein, such as a peptide), inserted,
inverted, substituted, and/or derivatized (e.g., by glycosylation,
phosphorylation, acetylation, myristoylation, prenylation,
palmitoylation, amidation, and/or addition of glycerophosphatidyl
inositol) such that the protein homolog exhibits one of the
aforementioned functions. Homologs of mite Group 1 proteins of the
present invention can be the result of natural allelic variation,
including natural mutation. Protein homologs of the present
invention can also be produced using techniques known in the art
including, but not limited to, direct modifications to the protein
and/or modification to a gene or nucleic acid molecule encoding the
protein using, for example, classic or recombinant DNA techniques
to effect random or targeted mutagenesis. Such nucleic acid
molecules are referred to herein as nucleic acid molecule homologs.
A preferred recombinant mite Group 1 protein of the present
invention is a pro-form or a mature form of a mite Group 1
protein.
[0024] A recombinant mite Group 1 protein of the present invention
is a protein that is encoded by a mite Group 1 nucleic acid
molecule of the present invention, also referred to as a nucleic
acid molecule of the present invention. Such nucleic acid molecules
are described in more detail herein. A recombinant mite protein of
the present invention preferably has at least one of the following
functions: (a) ability to selectively bind IgE; and (b) ability to
cause proliferation of a T cell that proliferates in response to a
native mite Group 1 protein. A native mite Group 1 protein refers
to a Group 1 protein recovered directly from a species of mite. In
one embodiment, a native mite Group 1 protein is purified from a
mite extract under conditions that retain the mite Group 1
protein's inherent IgE reactivity. As used herein, a protein's IgE
reactivity refers to the ability of that protein to selectively
bind IgE that is reactive with a mite Group 1 protein. As used
herein, the terms selectively binds IgE and selectively binds to
(or with) IgE refer to the ability of a mite Group 1 protein of the
present invention to preferentially bind to IgE specific for Group
1 allergens, without being able to substantially bind to IgE
specific for other allergens. IgE that is reactive with a mite
Group 1 protein is an IgE antibody that reacts with a mite Group 1
protein in a manner equivalent to an IgE raised in response to a
mite Group 1 protein. Methods to purify native mite Group 1
proteins such that they retain their inherent (i.e., natural) IgE
reactivity are known to those skilled in the art, examples of which
are disclosed herein. Such a native mite Group 1 protein can be
used as a "standard" by which to compare a function, or activity,
of a mite Group 1 protein obtained by other means, such as by
expression of a recombinant form of a mite Group 1 protein of the
same species as that from which the native protein is purified.
[0025] The ability of a recombinant mite Group 1 protein to
selectively bind to IgE can be assayed by methods known in the art,
such as, but not limited to, those disclosed herein. Methods to
compare that IgE binding activity with the IgE binding activity of
a native mite Group 1 protein are also known in the art and
include, but are not limited to, those methods disclosed herein. In
one embodiment, recombinant and native forms of a mite Group 1
protein are contacted (i.e., reacted) with serum samples from
animals that are allergic to mites using, for example, an ELISA
format, and a determination is made of what percentage of serum
samples reactive with the native protein are also reactive with the
recombinant protein. Preferably the testing is conducted using
assay conditions in which essentially all of the mite-allergic
serum samples give a positive result with the native mite Group 1
protein. An example of how the percentage is determined is as
follows: if a recombinant mite Group 1 protein is tested against 10
mite-allergic serum samples, wherein all 10 samples are reactive to
a native mite Group 1 protein, and only 7 samples are reactive to
the recombinant protein, the reactivity is expressed as 7/10, or
70%. That is, the recombinant mite Group 1 protein selectively
binds to IgE of 70% of serum samples comprising IgE that
selectively bind to a native mite Group 1 protein. As used herein,
a recombinant mite Group 1 protein that has comparable, or
substantially equivalent, activity to a native mite Group 1 protein
is a recombinant mite Group 1 protein that reacts with essentially
all of the serum samples that are reactive with the native Group 1
protein.
[0026] In another embodiment, the abilities of recombinant and
native forms of a mite Group 1 protein to selectively bind to a
monoclonal antibody raised against a native mite Group 1 monoclonal
antibody (i.e., an anti-native mite Group 1 monoclonal antibody) or
to a panel of such monoclonal antibodies are compared. A
recombinant Group 1 protein that has comparable, or substantially
equivalent, activity to a native Group 1 protein is a recombinant
mite Group 1 protein that reacts with essentially all of the
monoclonal antibodies that react with the native mite Group 1
protein. In the addition, the binding affinities of the monoclonal
antibodies for the recombinant Group 1 protein should be very
similar to the respective binding affinities of the monoclonal
antibodies for the native Group 1 protein. The binding affinity can
be determined with a simple dose-response curve.
[0027] A preferred method to determine the IgE reactivity of a
recombinant mite Group 1 protein is to compare the reactivities of
recombinant and native forms of a mite Group 1 protein to IgE in
serum samples that selectively bind to native mite Group 1
proteins. The phrase, an IgE activity substantially equivalent to
that of a native mite Group 1 protein refers to an IgE reactivity
that is very comparable, or similar to, the activity of a native
mite Group 1 protein. Preferred mite Group 1 proteins of the
present invention exhibit IgE reactivities that are at least about
70%, preferably at least about 75%, more preferably at least about
80%, more preferably at least about 85%, more preferably at least
about 90%, and more preferably at least about 95% equivalent to a
native mite Group 1 protein. A particularly preferred recombinant
mite Group 1 protein of the present invention selectively binds to
IgE of about 100% of serum samples comprising IgE that selectively
bind to a native mite Group 1 protein.
[0028] The ability of a recombinant mite Group 1 protein of the
present invention to cause proliferation of a T cell that
proliferates in response to a native mite Group 1 protein, also
referred to herein as T cell reactivity, can be assayed by methods
known in the art; see, for example, Janeway, et al., 1996,
Immunobiology, Second Edition, Garland Publishing Inc., New York,
N.Y.; Janeway et al., ibid., is incorporated by reference herein in
its entirety. In one embodiment, a recombinant mite Group 1 protein
of the present invention preferably contains most or all of the
relevant dominant T cell epitopes to stimulate T cell
proliferation. In order to determine whether a recombinant mite
Group 1 protein contains relevant dominant T cell epitopes, T cell
proliferation assays can be performed, by methods known to those
skilled in the art, and the ability of that recombinant mite Group
1 protein to stimulate T cell proliferation can be compared to the
ability of the corresponding native mite Group 1 protein to
stimulate T cell proliferation. A preferred recombinant mite Group
1 protein of the present invention stimulates T cell proliferation
as well as, or in a comparable manner to, a native mite Group 1
protein.
[0029] A mite Group 1 nucleic acid molecule of the present
invention refers to a Group 1 nucleic acid molecule derived from a
mite, and as such, can be obtained from its natural source (i.e.,
directly from a mite, examples of such mites being disclosed
herein), or can be produced using, for example, recombinant nucleic
acid technology (e.g., polymerase chain reaction (PCR)
amplification or cloning) or chemical synthesis. A nucleic acid
molecule of the present invention can be DNA, RNA, or a derivative
of DNA or RNA. Mite Group 1 nucleic acid molecules include natural
forms including allelic variants, complementary DNAs (cDNAs) or
RNAs derived from genomic sequences (including those incorporating
natural variations), and nucleic acid molecules modified by
nucleotide insertions, deletions, substitutions, and/or inversions
in a manner such that the modifications do not substantially
interfere with the nucleic acid molecule's ability to encode a mite
Group 1 protein of the present invention. A modified mite Group 1
nucleic acid homolog can be produced using a number of methods
known to those skilled in the art, see, for example, Sambrook et
al, 1989, Molecular Cloning: A Laboratory Manual, Cold Spring
Harbor Labs Press; Sambrook et al, ibid. is incorporated by
reference herein in its entirety. For example, nucleic acid
molecules can be modified using a variety of techniques such as
site-directed mutagenesis, chemical treatment, restriction enzyme
cleavage, ligation of nucleic acid fragments, PCR amplification,
synthesis of oligonucleotide mixtures and ligation of mixture
groups to "build" a mixture of nucleic acid molecules, and
combinations thereof. Nucleic acid molecules of the present
invention can be selected by hybridization with a mite Group 1
nucleic acid molecule, as discussed below, and by the ability of
such nucleic acid molecules to encode a mite Group 1 protein that
selectively binds to IgE and/or causes proliferation of a T cell
that proliferates in response to a native mite roup 1 protein. A
full-length mite Group 1 protein, i.e., the initial translation
product, is a pre-pro-form of the protein containing a pre-segment
and a pro-segment as well as the mature protein. The pre-segment,
or pre-sequence, also known as the leader sequence or the signal
sequence, apparently directs the mite Group 1 protein to be
secreted from the cell and is proteolytically cleaved to yield a
pro-form of the protein. The pro-segment, or pro-sequence, is then
proteolytically cleaved to yield the mature Group 1 protein. A
preferred protein to express is the pro-form (which includes the
mature sequence as well as the pro sequence, but does not have a
signal sequence attached) or the mature form.
[0030] Nucleic acid molecules and proteins of the present invention
that are of certain species and lengths are denoted as follows: a
Der f 1 nucleic acid molecule protein of a certain length is
denoted as nDerf1.sub.#, for example, nDerf1.sub.963, wherein "#"
refers to the number of nucleotides in that molecule; in a similar
fashion, a Der p 1 nucleic acid molecule of a certain length is
denoted as nDerp1.sub.#, a E. maynei Group 1 nucleic acid molecule
of a certain length is denoted as nEurm1.sub.#, and so on.
Similarly, a Der f 1 protein of the present invention of known
length is denoted PDerf1.sub.#, a Der p 1 protein of the present
invention of known length is denoted PDerp1.sub.#, a E. maynei
Group 1 protein of a certain length is denoted as PEurm1.sub.#, and
so on.
[0031] A mite Group 1 nucleic acid molecule of the present
invention includes a nucleic acid molecule that hybridizes under
stringent conditions with a nucleic acid molecule having at least
one of the following nucleic acid sequences: SEQ ID NO:3, SEQ ID
NO:6, SEQ ID NO:9, SEQ ID NO:12, SEQ ID NO:15, SEQ ID NO:18, SEQ ID
NO:21, SEQ ID NO:24, SEQ ID NO:27, SEQ ID NO:30, SEQ ID NO:33, SEQ
ID NO:36, SEQ ID NO:39, SEQ ID NO:42, and SEQ ID NO:45.
[0032] SEQ ID NO:1 is the nucleic acid sequence of the coding
strand of nDerf1.sub.963, a nucleic acid molecule that contains the
coding sequence of the full-length, or pre-pro-form, of a Der f 1
protein. SEQ ID NO:4 is the nucleic acid sequence of the coding
strand of nDerf1.sub.909a, a nucleic acid molecule that contains
the coding sequence of the pro-form of a Der f 1 protein; the
coding sequence of this pro-form protein spans from nucleotide 55
to nucleotide 963 of SEQ ID NO:1. SEQ ID NO:7 is the nucleic acid
sequence of the coding strand of nDerf1.sub.669a, a nucleic acid
molecule that contains the coding sequence of the mature form of a
Der f 1 protein; the coding sequence of the mature form spans from
nucleotide 295 to nucleotide 963 of SEQ ID NO:1. Amino acid
sequences SEQ ID NO:2, SEQ ID NO:5, and SEQ ID NO:8 represent the
amino acid sequences of Der f 1 proteins PDerf1.sub.321,
PDerf1.sub.303a, and PDerf1.sub.223a, respectively, which are the
translation products of nucleic acid sequences SEQ ID NO:1, SEQ ID
NO:4, and SEQ ID NO:7 respectively. Nucleic acid sequences SEQ ID
NO:3, SEQ ID NO:6, and SEQ ID NO:9 represent reverse complements of
SEQ ID NO:1, SEQ ID NO:4, and SEQ ID NO:7, respectively, and as
such represent the non-coding strands of nucleic acid molecules
nDerf 1 nDerf1.sub.909a, and nDerf1.sub.669a, respectively.
[0033] SEQ ID NO:10 is the nucleic acid sequence of the coding
strand of nDerp1.sub.960, a nucleic acid molecule that contains the
coding sequence of the pre-pro-form of a Der p 1 protein. SEQ ID
NO:13 is the nucleic acid sequence of the coding strand of
nDerp1.sub.906, a nucleic acid molecule that contains the coding
sequence of the pro-form of a Der p 1 protein; the coding sequence
of this pro-form spans from nucleotide 55 to nucleotide 960 of SEQ
ID NO:10. SEQ ID NO:16 is the nucleic acid sequence of the coding
strand of nDerp1.sub.669, a nucleic acid molecule that contains the
coding sequence of the mature form of a Der p1 protein; the coding
sequence of this mature form spans from nucleotide 292 to
nucleotide 960 of SEQ ID NO:10. Amino acid sequences SEQ ID NO:11,
SEQ ID NO:14, and SEQ ID NO:17 represent the amino acid sequences
of Der p 1 proteins PDerp1.sub.320, PDerp1.sub.302, and
PDerp1.sub.223, respectively, which are the translation products of
nucleic acid sequences SEQ ID NO:10, SEQ ID NO:13, and SEQ ID
NO:16, respectively. Nucleic acid sequences SEQ ID NO:12, SEQ ID
NO:15, and SEQ ID NO:18 represent reverse complements of SEQ ID
NO:10, SEQ ID NO:13, and SEQ ID NO:16, respectively, and as such,
represent the non-coding strands of nucleic acid molecules
nDerp1.sub.960, nDerp1.sub.906, and nDerp1.sub.669,
respectively.
[0034] SEQ ID NO:19 is the nucleic acid sequence of the coding
strand of nEurm1.sub.963, a nucleic acid molecule that contains the
coding sequence of the pre-pro-form of a E. maynei Group 1 protein.
SEQ ID NO:22 is the nucleic acid sequence of the coding strand of
nEurm1.sub.909, a nucleic acid molecule that contains the coding
sequence of the pro-form of a E. maynei Group 1 protein; the coding
sequence of this pro-form spans from nucleotide 55 to nucleotide
963 of SEQ ID NO:19. SEQ ID NO:25 is the nucleic acid sequence of
the coding strand of nEurm1.sub.669, a nucleic acid molecule that
contains the coding sequence of mature form of a E. maynei Group 1
protein; the coding sequence of this mature form spans from
nucleotide 295 to nucleotide 963 of SEQ ID NO:19. Sequences SEQ ID
NO:20, SEQ ID NO:23 and SEQ ID NO:26 represent the amino acid
sequences of the E. maynei Group 1 proteins PEurm1.sub.321,
PEurm1.sub.303, and PEurm1.sub.223, respectively, which are the
translation products of SEQ ID NO:19, SEQ ID NO:22, and SEQ ID
NO:25, respectively. Nucleic acid sequences SEQ ID NO:21, SEQ ID
NO:24, and SEQ ID NO:27 represent reverse complements of SEQ ID
NO:19, SEQ ID NO:22, and SEQ ID NO:25, respectively, and as such,
represent the non-coding strands of nucleic acid molecules
nEurm1.sub.963, nEurm1.sub.909, and nEurm1.sub.669,
respectively.
[0035] SEQ ID NO:28 is the nucleic acid sequence of the coding
strand of nDerf1.sub.909b and represents a novel nucleic acid
sequence. This nucleic acid sequence is derived from SEQ ID NO:4,
but incorporates several codon changes to reflect codon preferences
in Pichia. The changes are as follows: a change from CGA to AGA in
the codon spanning nucleotide positions 538 to 540 of SEQ ID NO:4;
a change from CGA to AGA in the codon spanning nucleotide positions
547 to 549 of SEQ ID NO:4; a change from CGA to AGA in the codon
spanning nucleotide positions 553 to 555 of SEQ ID NO:4; and a
change from CGA to AGA in the codon spanning nucleotide positions
556 to 558 of SEQ ID NO:4. SEQ ID NO:31 is the nucleic acid
sequence of the coding strand of nDerf1.sub.669b and also
represents a novel nucleic acid sequence. This nucleic acid
sequence is derived from SEQ ID NO:7, but incorporates several
codon changes, to reflect codon preferences in Pichia. The changes
are as follows: changes from CGA to AGA in the codons spanning
nucleotide positions (a) 298 to 300, (b) 307 to 309, (c) 313 to
315, and (d) 316-318 of SEQ ID NO:7. SEQ ID NO:29 and SEQ ID NO:32
represent the amino acid sequences of proteins PDerf1.sub.303b and
PDerf1.sub.223b, respectively, which are the translation products
of nucleic acid sequences SEQ ID NO:28 and SEQ ID NO:31,
respectively. SEQ ID NO:30 and SEQ ID NO:33 represent reverse
complements of SEQ ID NO:28 and SEQ ID NO:31, respectively.
[0036] SEQ ID NO:34 is the nucleic acid sequence of the coding
strand of nDerf1.sub.909c and represents a novel nucleic acid
sequence. This nucleic acid sequence is derived from SEQ ID NO:4,
but incorporates several codon changes to reflect codon preferences
in E. coli. The first change is from CCA to CCG in the codon
spanning nucleotide positions 4 to 6 of SEQ ID NO:4; the second
change is from CGA to CGT in the codon spanning nucleotide
positions 547 to 549 of SEQ ID NO:4; the third is from CGA to CGT
in the codon spanning nucleotide positions 553 to 555 of SEQ ID
NO:4; the fourth is from CGA to CGT in the codon spanning
nucleotide positions 556 to 558 of SEQ ID NO:4; and the fifth is
from TAT to TAC in the codon spanning nucleotide positions 895 to
897 of SEQ ID NO:4 to eliminate a NdeI cloning site within the Der
f 1 coding region. SEQ ID NO:43 is the nucleic acid sequence of the
coding region of nDerf1.sub.669d and also represents a novel
nucleic acid sequence. This nucleic acid sequence is derived from
SEQ ID NO:7, but incorporates several codon changes to reflect
codon preferences in E. coli. The first change is a change from CGA
to CGT in the codon spanning nucleotide positions 307 to 309 of SEQ
ID NO:7; the second is from CGA to CGT in the codon spanning
nucleotide positions 313 to 315 of SEQ ID NO:7; the third is from
CGA to CGT in the codon spanning nucleotide positions 316 to 318 of
SEQ ID NO:7; and the fourth is from TAT to TAC in the codon
spanning nucleotide positions 655 to 657 of SEQ ID NO:7 to
eliminate a NdeI cloning site within the Der f 1 coding region.
Sequences SEQ ID NO:35 and SEQ ID NO:44 represent the amino acid
sequences of proteins PDerf1.sub.303c and PDerf1.sub.223d,
respectively, and are the translation products of nucleic acid
sequences SEQ ID NO:34 and 43, respectively. SEQ ID NO:36 and SEQ
ID NO:45 represent reverse complements of SEQ ID NO:34 and SEQ ID
NO:43, respectively.
[0037] SEQ ID NO:37 is the nucleic acid sequence of the coding
strand of nDerf1.sub.909d and represents a novel nucleic acid
sequence. This nucleic acid sequence is derived from SEQ ID NO:28,
the D. farinae pro-form Group 1 protein with codons altered to
reflect Pichia codon preferences described above; however, SEQ ID
NO:37 has also been altered to change the codon spanning nucleotide
positions 397 to 399 of SEQ ID NO:28 from AAC (encoding asparagine
(N)) to CAA (encoding glutamine (Q)). This change results in the
encoding of a protein that lacks an N-linked glycosylation site.
Thus, translation of SEQ ID NO:37 yields amino acid sequence SEQ ID
NO:38 which is representative of protein PDerf1.sub.303d, which is
a novel protein, with the N to Q change at position 133 of the
amino acid sequence. SEQ ID NO:39 represents the reverse complement
of SEQ ID NO:37.
[0038] SEQ ID NO:40 is the nucleic acid sequence of the coding
strand of nDerf1.sub.669, and represents a novel nucleic acid
sequence. This nucleic acid sequence is derived from SEQ ID NO:31,
the D. farinae mature form Group 1 protein with codons altered to
reflect Pichia codon preferences described above; however, SEQ ID
NO:40 has also been altered to change the codon spanning nucleotide
positions 157 to 159 of SEQ ID NO:31 from AAC (encoding asparagine
(N)) to CAA (encoding glutamine (Q)). This change results in the
encoding of a protein that lacks an N-linked glycosylation site.
Thus, translation of SEQ ID NO:40 yields amino acid sequence SEQ ID
NO:41 which is representative of protein PDerf1.sub.223c, which is
a novel protein, with the N to Q change at position 53 of the amino
acid sequence. SEQ ID NO:42 represents the reverse complement of
SEQ ID NO:40.
[0039] As stated above, a mite Group 1 nucleic acid molecule of the
present invention includes a nucleic acid molecule that hybridizes
under stringent conditions with a nucleic acid molecule having a
specified nucleic acid sequence. Stringent hybridization conditions
are determined based on defined physical properties of the gene or
other nucleic acid molecule to which the nucleic acid molecule to
be tested is being hybridized, and can be defined mathematically.
Stringent hybridization conditions are those experimental
parameters that allow an individual skilled in the art to identify
significant similarities between heterologous nucleic acid
molecules. These conditions are well known to those skilled in the
art. See, for example, Sambrook, et al., 1989, Molecular Cloning: A
Laboratory Manual, Cold Spring Harbor Labs Press, and Meinkoth, et
al., 1984, Anal. Biochem. 138, 267-284, each of which is
incorporated by reference herein in its entirety. As explained in
detail in the cited references, the determination of hybridization
conditions involves the manipulation of a set of variables
including the ionic strength (M, in moles/liter), the hybridization
temperature (.degree. C.), the concentration of nucleic acid helix
destabilizing agents (such as formamide), the average length of the
shortest hybrid duplex (n), and the percent G+C content of the
fragment to which an unknown nucleic acid molecule is being
hybridized. For nucleic acid molecules of at least about 150
nucleotides, these variables are inserted into a standard
mathematical formula to calculate the melting temperature, or
T.sub.1, of a given nucleic acid molecule. As defined in the
formula below, T.sub.m is the temperature at which two
complementary nucleic acid molecule strands will disassociate,
assuming 100% complementarity between the two strands:
T.sub.m=81.5.degree. C.+16.6 log M+0.41(%G+C)-500/n-0.61(%
formamide).
For nucleic acid molecules smaller than about 50 nucleotides,
hybrid stability is defined by the dissociation temperature
(T.sub.d), which is defined as the temperature at which 50% of the
duplexes dissociate. For these smaller molecules, the stability at
a standard ionic strength is defined by the following equation:
T.sub.d=4(G+C)+2(A+T).
A temperature of 5.degree. C. below T.sub.d is used to detect
hybridization between perfectly matched molecules.
[0040] Also well known to those skilled in the art is how base pair
mismatch, i.e. differences between two nucleic acid molecules being
compared, including non-complementarity of bases at a given
location, and gaps due to insertion or deletion of one or more
bases at a given location on either of the nucleic acid molecules
being compared, will affect T.sub.m or T.sub.d for nucleic acid
molecules of different sizes. For example, T.sub.m decreases about
1.degree. C. for each 1% of mismatched base pairs for hybrids
greater than about 150 bp, and T.sub.d decreases about 5.degree. C.
for each mismatched base pair for hybrids below about 50 bp.
Conditions for hybrids between about 50 and about 150 base pairs
can be determined empirically and without undue experimentation
using standard laboratory procedures well known to those skilled in
the art. These simple procedures allow one skilled in the art to
set the hybridization conditions (by altering, for example, the
salt concentration, the formamide concentration or the temperature)
so that only nucleic acid hybrids with greater than a specified %
base pair mismatch will hybridize. Stringent hybridization
conditions are commonly understood by those skilled in the art to
be those experimental conditions that will allow less than or equal
to about 30% base pair mismatch (i.e., at least about 70%
identity). Because one skilled in the art can easily determine
whether a given nucleic acid molecule to be tested is less than or
greater than about 50 nucleotides, and can therefore choose the
appropriate formula for determining hybridization conditions, he or
she can determine whether the nucleic acid molecule will hybridize
with a given gene under stringent hybridization conditions and
similarly whether the nucleic acid molecule will hybridize under
conditions designed to allow a desired amount of base pair
mismatch.
[0041] Hybridization reactions are often carried out by attaching
the nucleic acid molecule to be hybridized to a solid support such
as a membrane, and then hybridizing with a labeled nucleic acid
molecule, typically referred to as a probe, suspended in a
hybridization solution. Examples of common hybridization reaction
techniques include, but are not limited to, the well-known Southern
and northern blotting procedures. Typically, the actual
hybridization reaction is done under non-stringent conditions,
i.e., at a lower temperature and/or a higher salt concentration,
and then high stringency is achieved by washing the membrane in a
solution with a higher temperature and/or lower salt concentration
in order to achieve the desired stringency.
[0042] For example, if the skilled artisan wished to identify a
nucleic acid molecule that hybridizes under conditions that would
allow less than or equal to 30% pair mismatch with a nucleic acid
molecule of about 150 bp in length or greater, the following
conditions could preferably be used. The unknown nucleic acid
molecules would be attached to a support membrane, and the 150 bp
probe would be labeled, e.g. with a radioactive tag. The
hybridization reaction could be carried out in a solution
comprising 2.times.SSC and 0% formamide, at a temperature of about
37.degree. C. (low stringency conditions). Solutions of differing
concentrations of SSC can be made by one of skill in the art by
diluting a stock solution of 20.times.SSC (175.3 gram NaCl and
about 88.2 gram sodium citrate in 1 liter of water, pH 7) to obtain
the desired concentration of SSC. The skilled artisan would
calculate the washing conditions required to allow up to 30% base
pair mismatch. For example, assuming an average G+C content of the
nucleic acid molecule to be hybridized of about 50%, and a wash
solution comprising 1.times.SSC and 0% formamide, the T.sub.m of
perfect hybrids would be about 85.degree. C.:
81.5.degree. C.+16.6
log(0.15M)+(0.41.times.0.37)-(500/150)-(0.61.times.0)=85.degree.
C.
Thus, to achieve hybridization with nucleic acid molecules having
about 30% base pair mismatch, hybridization washes would be carried
out at a temperature of less than or equal to 55.degree. C. It is
thus within the skill of one in the art to calculate additional
hybridization temperatures based on the desired percentage base
pair mismatch, formulae and G/C content disclosed herein. For
example, it is appreciated by one skilled in the art that as the
nucleic acid molecule to be tested for hybridization against
nucleic acid molecules of the present invention having sequences
specified herein becomes longer than 150 nucleotides, the T.sub.m
for a hybridization reaction allowing up to 30% base pair mismatch
will not vary significantly from 55.degree. C. It is to be noted
that the minimal size of a mite Group 1 nucleic acid molecule of
the present invention is a size sufficient to allow the formation
of a stable hybrid (i.e., hybridization under stringent
hybridization conditions) with the complementary sequence of
another nucleic acid molecule. As such, the minimal size of a mite
Group 1 nucleic acid molecule of the present invention is from
about 12 to about 18 nucleotides in length.
[0043] Furthermore, it is known in the art that there are
commercially available computer programs for determining the degree
of similarity between two nucleic acid or protein sequences. These
computer programs include various known methods to determine the
percentage identity and the number and length of gaps between
hybrid nucleic acid molecules or proteins. Preferred methods to
determine the percent identity among amino acid sequences and also
among nucleic acid sequences include analysis using one or more of
the commercially available computer programs designed to compare
and analyze nucleic acid or amino acid sequences. These computer
programs include, but are not limited to, the Wisconsin Package
Version 9.0 sequence analysis software, available from Genetics
Computer Group (GCG.TM.), Madison, Wis.; DNAsis.TM., available from
Hitachi Software, San Bruno, Calif.; and MacVector.TM., available
from the Eastman Kodak Company, New Haven, Conn. A preferred method
to determine percent identity among amino acid sequences and also
among nucleic acid sequences includes using the GAP program with
pair-wise comparisons within the GCG.TM. Wisconsin Package Version
9.0 sequence analysis software, hereinafter referred to as default
parameters.
[0044] Preferred mite Group 1 proteins of the present invention
include recombinant mite Group 1 proteins that are at least about
70%, preferably at least about 75%, more preferably at least about
80%, more preferably at least about 85%, more preferably at least
about 90%, and even more preferably at least about 95% identical to
amino acid sequences SEQ ID NO:2, SEQ ID NO:5, SEQ ID NO:8, SEQ ID
NO:11, SEQ ID NO:14, SEQ ID NO:17, SEQ ID NO:20, SEQ ID NO:23, SEQ
ID NO:26, SEQ ID NO:29, SEQ ID NO:32, SEQ ID NO:35, SEQ ID NO:38,
SEQ ID NO:41, and SEQ ID NO:44, and/or a protein comprising a
fragment of any of these amino acid sequences, wherein the fragment
has a function of selectively binding to IgE that binds native mite
Group 1 protein and/or causing proliferation of a T cell that
proliferates in response to a native mite Group 1 protein. A
particularly preferred mite Group 1 protein includes at least a
portion of at least one of the following amino acid sequences: SEQ
ID NO:2, SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:11, SEQ ID NO:14, SEQ
ID NO:17, SEQ ID NO:20, SEQ ID NO:23, SEQ ID NO:26, SEQ ID NO:29,
SEQ ID NO:32, SEQ ID NO:35, SEQ ID NO:38, SEQ ID NO:41, and/or SEQ
ID NO:44. Also preferred is a protein comprising at least a portion
of at least one protein encoded by an allelic variant of a nucleic
acid molecule encoding a protein having at least one of the
following sequences: SEQ ID NO:2, SEQ ID NO:5, SEQ ID NO:8, SEQ ID
NO:11, SEQ ID NO:14, SEQ ID NO:17, SEQ ID NO:20, SEQ ID NO:23, SEQ
ID NO:26, SEQ ID NO:29, SEQ ID NO:32, SEQ ID NO:35, SEQ ID NO:38,
SEQ ID NO:41, and/or SEQ ID NO:44. Such portions preferably have at
least one of the following functions: selectively binding to IgE
that binds native mite Group 1 protein and/or causing proliferation
of a T cell that proliferates in response to a native mite Group 1
protein. It is to be noted that the proteins corresponding to SEQ
ID NO:2, SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:11, SEQ ID NO:14, SEQ
ID NO:17, SEQ ID NO:20, SEQ ID NO:23, SEQ ID NO:26, SEQ ID NO:29,
SEQ ID NO:32, SEQ ID NO:35, SEQ ID NO:38, SEQ ID NO:41, and/or SEQ
ID NO:44 are, respectively, PDerf1.sub.321, PDerf1.sub.303a,
PDerf1.sub.223a, PDerp1.sub.320, PDerp1.sub.302, PDerp1.sub.223,
PEurm1.sub.321, PEurm1.sub.303, PEurm1.sub.223, PDerf11.sub.303b,
PDerf1.sub.223b, PDerf1.sub.303c, PDerf1.sub.303d, PDerf1.sub.223c,
and/or PDerf.sub.223d.
[0045] Preferred nucleic acid molecules to use in encoding mite
Group 1 proteins of the present invention are nucleic acid
molecules that are at least about 70%, preferably at least about
75%, more preferably at least about 80%, more preferably at least
about 85%, more preferably at least about 90%, more preferably at
least about 95%, and even more preferably about 100% identical to
nucleic acid sequences SEQ ID NO:1, SEQ ID NO:4, SEQ ID NO:7, SEQ
ID NO:10, SEQ ID NO:13, SEQ ID NO:16, SEQ ID NO:19, SEQ ID NO:22,
SEQ ID NO:25, SEQ ID NO:28, SEQ ID NO:31, SEQ ID NO:34, SEQ ID
NO:37, SEQ ID NO:40, and SEQ ID NO:43, and/or a fragment thereof,
wherein such a fragment (a) hybridizes to a nucleic acid molecule
having the complement of any of the listed nucleic acid sequences
and/or (b) encodes a protein that selectively binds to IgE that
binds native mite Group 1 protein and/or causes proliferation of a
T cell that proliferates in response to a native mite Group 1
protein. Particularly preferred mite Group 1 nucleic acid molecules
include at least one of the following nucleic acid sequences: SEQ
ID NO:1, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:10, SEQ ID NO:13, SEQ
ID NO:16, SEQ ID NO:19, SEQ ID NO:22, SEQ ID NO:25, SEQ ID NO:28,
SEQ ID NO:31, SEQ ID NO:34, SEQ ID NO:37, SEQ ID NO:40, and SEQ ID
NO:43, and fragments thereof. Also preferred are naturally
occurring variants of such nucleic acid molecules, and fragments
thereof. It is to be noted that SEQ ID NO:1, SEQ ID NO:4, SEQ ID
NO:7, SEQ ID NO:10, SEQ ID NO:13, SEQ ID NO:16, SEQ ID NO:19, SEQ
ID NO:22, SEQ ID NO:25, SEQ ID NO:28, SEQ ID NO:31, SEQ ID NO:34,
SEQ ID NO:37, SEQ ID NO:40, and SEQ ID NO:43 are the coding strands
of the following respective nucleic acid molecules: nDerf1.sub.963,
nDerf1.sub.909a, nDerf1.sub.669a, nDerp1.sub.960, nDerp1.sub.906,
nDerp1.sub.669, nEurm1.sub.963, nEurm1.sub.909, nEurm1.sub.669,
nDerf11.sub.909b, nDerf1.sub.669b, nDerf1.sub.909c,
nDerf1.sub.909d, nDerf1.sub.669c, and/or nDerf.sub.669d.
[0046] One embodiment of a method to produce a recombinant mite
Group 1 protein of the present invention includes the steps of (a)
culturing a methyltrophic yeast microorganism transformed with a
nucleic acid molecule encoding the recombinant mite Group 1
protein, and (b) recovering the recombinant mite Group 1 protein
from the methyltrophic yeast microorganism. A methyltrophic yeast
microorganism is a yeast strain capable of using methanol as its
sole carbon source. Although any methyltrophic yeast can be used in
the methods of the present invention, preferred methyltrophic yeast
microorganisms to transform and culture include those of the genera
Pichia, Hansenula, Torulopsis, and Candida, with the genus Pichia
being particularly preferred. Preferred methyltrophic yeast species
include Pichia pastoris, Pichia acaciae, Pichia anomala, Pichia
augusta, Pichia capsulata, Pichia fabianii, Pichia farinosa, Pichia
guilliermondii, Pichia methanolica, Pichia norvegensis, Pichia
pinus, Pichia stipitis, Hansenula polymorpha, and Candida boidinii.
A preferred Pichia microorganism is Pichia pastoris Another
embodiment of a method to produce a recombinant mite Group 1
protein of the present invention includes the steps of (a)
culturing an E. coli microorganism transformed with a nucleic acid
molecule encoding the recombinant mite Group 1 protein under
conditions in which the protein forms an inclusion body in the E.
coli microorganism, (b) isolating the inclusion body from the E.
coli microorganism, and (c) recovering the recombinant mite Group 1
protein from the inclusion body. Such a recombinant mite Group 1
protein selectively binds to IgE of at least about 70% of
IgE-containing serum samples that selectively bind to a native mite
Group 1 protein.
[0047] Transformation of a nucleic acid molecule of the present
invention into a microorganism can be accomplished by any method by
which a nucleic acid molecule can be inserted into the cell.
Transformation techniques include, but are not limited to,
transfection, electroporation, microinjection, lipofection,
adsorption, and protoplast fusion. Transformed nucleic acid
molecules of the present invention can remain extrachromosomal or
can integrate into one or more sites within a chromosome of the
transformed (i.e., recombinant) microorganism in such a manner that
their ability to be expressed is retained. A transformed
microorganism is also referred to herein as a transformed cell, a
recombinant microorganism or a recombinant cell.
[0048] A microorganism to be transformed can be either an
untransformed cell or a cell that is already transformed with at
least one nucleic acid molecule (e.g., one or more nucleic acid
molecules encoding one or more proteins of the present invention
and/or other proteins). A recombinant microorganism of the present
invention is preferably produced by transforming a host cell with
one or more recombinant molecules comprising one or more nucleic
acid molecules of the present invention. Examples of recombinant
microorganisms are provided herein.
[0049] As used herein, a recombinant molecule comprises a nucleic
acid molecule of the present invention operatively linked to a
transcription control sequence, preferably contained within an
expression vector. The phrase operatively linked refers to joining
of a nucleic acid molecule to a transcription control sequence in a
manner such that the molecule is able to be expressed when
transformed into a yeast or E. coli microorganism. As used herein,
an expression vector is a DNA or RNA vector, typically either a
plasmid or viral genome, that is capable of transforming a cell and
of effecting expression of a specified nucleic acid molecule. A
preferred recombinant molecule of the present invention contains
regulatory sequences such as transcription control sequences,
translation control sequences, origins of replication, and other
regulatory sequences that are compatible with the recombinant
microorganism and that control the expression of nucleic acid
molecules of the present invention. In particular, recombinant
molecules of the present invention at least include transcription
control sequences. Transcription control sequences are sequences
which control the initiation, elongation, and termination of
transcription. Particularly important transcription control
sequences are those which control transcription initiation, such as
promoter, enhancer, operator and repressor sequences. Suitable
transcription control sequences include any transcription control
sequence that can function in at least one of the recombinant
microorganisms of the present invention. A variety of such
transcription control sequences are known to those skilled in the
art; examples included, but are not limited to, tac, lac, trp, trc,
oxy-pro, omp/lpp, rrnB, bacteriophage lambda (such as lambda
p.sub.L (also referred to herein as lambda PL) and lambda p.sub.R
(also referred to herein as lambda PR) and fusions that include
such promoters), bacteriophage T7, T7lac, bacteriophage T3,
bacteriophage SP6, SP01, alpha-mating factor, Pichia alcohol
oxidase (AOX), antibiotic resistance gene, as other sequences
capable of controlling gene expression in E. coli or methyltrophic
yeast microorganisms; it is to be noted that this list is not
intended to be limiting as many additional transcriptional control
sequences are known. A particularly preferred recombinant molecule
includes a nucleic acid molecule that encodes a mite Group 1
protein, operatively linked to the alcohol oxidase promoter AOX1.
Another particularly preferred recombinant molecule includes a
nucleic acid molecule that encodes a mite Group 1 protein
operatively linked to the lambda PL promoter or the lambda PR
promoter.
[0050] Recombinant molecules of the present invention can contain
secretory signals (i.e., signal segment nucleic acid sequences) to
enable an expressed fusion protein of the present invention to be
secreted from the cell that produces the protein. Examples of
suitable signal segments include any signal segment capable of
directing the secretion of a protein of the present invention.
Preferred signal segment sequences include, but are not limited to,
mite Group 1 protein natural signal sequences and yeast alpha
signal sequences, with the S. cerevisiae alpha signal sequence
being particularly preferred for expression of a pro-form of a mite
Group 1 protein in a methyltrophic yeast microorganism.
[0051] Another embodiment of the present invention includes a
recombinant vector, which includes at least one isolated nucleic
acid molecule of the present invention, inserted into any vector
capable of delivering the nucleic acid molecule into a host cell.
Such a vector contains heterologous nucleic acid sequences, that is
nucleic acid sequences that are not naturally found adjacent to
nucleic acid molecules of the present invention and that preferably
are derived from a species other than the species from which the
nucleic acid molecule(s) are derived. The vector can be either RNA
or DNA, either prokaryotic or eukaryotic, and typically is a virus
or a plasmid. Recombinant vectors can be used in the cloning,
sequencing, and/or otherwise manipulation of mite Group 1 nucleic
acid molecules of the present invention.
[0052] Recombinant DNA technologies can be used to improve
expression of transformed nucleic acid molecules by manipulating,
for example, the number of copies of the nucleic acid molecules
within a host cell, the efficiency with which those nucleic acid
molecules are transcribed, the efficiency with which the resultant
transcripts are translated, and the efficiency of
post-translational modifications. Recombinant techniques useful for
increasing the expression of nucleic acid molecules of the present
invention include, but are not limited to, operatively linking
nucleic acid molecules to high-copy number plasmids, integration of
the nucleic acid molecules into one or more host cell chromosomes,
addition of vector stability sequences to plasmids, substitutions
or modifications of transcription control signals (e.g., promoters,
operators, enhancers), substitutions or modifications of
translational control signals (e.g., ribosome binding sites,
Shine-Dalgarno sequences), modification of nucleic acid molecules
of the present invention to correspond to the codon usage of the
host cell, deletion of sequences that destabilize transcripts, and
use of control signals that temporally separate recombinant cell
growth from recombinant enzyme production during fermentation. The
activity of an expressed recombinant protein of the present
invention may be improved by fragmenting, modifying, or
derivatizing nucleic acid molecules encoding such a protein.
[0053] One embodiment of a mite Group 1 protein of the present
invention is a fusion protein. Suitable fusion segments for use
with the present invention include, but are not limited to,
segments that can: link two or more mite Group 1 proteins of the
present invention to form multimers; enhance a protein's stability;
facilitate the purification of a mite Group 1 protein; and/or to
affect the immune response to a mite Group 1 protein. A suitable
fusion segment can be a domain of any size that has the desired
function (e.g., imparts increased stability, imparts increased
immunogenicity to a protein, and/or simplifies purification of a
protein). Fusion segments can be joined to amino and/or carboxyl
termini of the mite Group 1 protein and can be susceptible to
cleavage in order to enable straight-forward recovery of a mite
Group 1 protein. Fusion proteins are preferably produced by
culturing a recombinant cell transformed with a fusion nucleic acid
molecule that encodes a protein including the fusion segment
attached to either the carboxyl and/or amino terminal end of a mite
Group 1 protein. Preferred fusion segments include a metal binding
domain (e.g., a poly-histidine segment); an immunoglobulin binding
domain (e.g., Protein A; Protein G; T cell; B cell; Fc receptor or
complement protein antibody-binding domains); a sugar binding
domain (e.g., a maltose binding domain); and/or a "tag" domain
(e.g., at least a portion of -galactosidase, a strep tag peptide, a
T7 tag peptide, a Flag.TM. peptide, or other domains that can be
purified using compounds that bind to the domain, such as
monoclonal antibodies). More preferred fusion segments include
metal binding domains, such as a poly-histidine segment; a maltose
binding domain; a strep tag peptide, such as that available from
Biometra in Tampa, Fla.; and an S10 peptide.
[0054] An important discovery of the present invention are methods
identified to produce recombinant mite Group 1 proteins having
desirable functions. For example, culturing of a methyltrophic
yeast microorganism transformed with a nucleic acid molecule
encoding a pro-form of a mite Group 1 protein fused to an alpha
factor signal sequence results in the production of a mature mite
Group 1 protein exhibiting IgE reactivity comparable to that
exhibited by the corresponding native mite Group 1 protein. Such
culturing leads not only to expression of the pro-form of the
protein but also to processing of the pro-form into the mature
form. This result was unexpected in that P. pastoris expression of
a cDNA encoding pro-cathepsin B, in contrast, yielded the pro-form
of the enzyme which needed to be activated in vitro in the presence
of acid; see, for example, Illy et al, 1997, J Biol Chem 272,
1197-1202, and references cited therein. In another example,
culturing of an E. coli microorganism transformed with a nucleic
acid molecule encoding a pro-form of a mite Group 1 protein results
in the production of inclusion bodies comprising the pro-form,
which is then recovered by solubilizing and refolding the protein.
The recovered pro-form exhibits IgE reactivity that is at least 70%
equivalent to that exhibited by the corresponding native mite Group
1 protein.
[0055] Effective culturing conditions to produce a recombinant mite
Group 1 protein of the present invention include, but are not
limited to, effective media, bioreactor, temperature, pH and oxygen
conditions that permit protein production. An effective medium
refers to any medium in which a cell is cultured to produce a mite
Group 1 protein of the present invention. Such a medium typically
comprises an aqueous medium having assimilable carbon, nitrogen and
phosphate sources, and appropriate salts, minerals, metals and
other nutrients, such as vitamins. Cells of the present invention
can be cultured in conventional fermentation bioreactors, shake
flasks, test tubes, microtiter dishes, and petri plates. Culturing
can be carried out at a temperature, pH and oxygen content
appropriate for methyltrophic yeast or E. coli. Such culturing
conditions are within the expertise of one of ordinary skill in the
art, and examples are provided in the Examples section.
[0056] Depending on the vector and host system used for production,
resultant proteins of the present invention may either remain
within the recombinant cell; be secreted into the culturing, or
fermentation, medium; or be secreted into a space between two
cellular membranes. In accordance with the present invention,
recombinant mite Group 1 proteins produced by a methyltrophic yeast
microorganism of the present invention are preferably secreted into
the culturing medium, and recombinant mite Group 1 proteins
produced by E. coli form inclusion bodies within the E. coli
microorganism. As used herein, recovering a protein from a
methyltrophic yeast microorganism refers to collecting the medium
containing the yeast and the protein and need not imply additional
steps of separation or purification. In a preferred embodiment, the
protein is in the medium and, hence, can be easily separated from
the yeast. Also, as used herein, the phrases isolating an inclusion
body from an E. coli microorganism or recovering protein from the
inclusion bodies do not imply any specified degree of separation or
purification.
[0057] Proteins of the present invention can be purified using a
variety of purification techniques, such as, but not limited to,
affinity chromatography, ion exchange chromatography, filtration,
electrophoresis, hydrophobic interaction chromatography, gel
filtration chromatography, reverse phase chromatography,
concanavalin A chromatography, chromatofocusing and differential
solubilization. Proteins of the present invention are preferably
retrieved in "substantially pure" form. As used herein,
"substantially pure" refers to a purity that allows for the
effective use of the protein as a diagnostic, therapeutic or
prophylactic.
[0058] A preferred method to purify a mite Group 1 protein from a
mite Group 1 transformed-methyltrophic yeast microorganism is to
recover the medium in which the mite Group 1 transformed
methyltrophic yeast microorganism was cultured, and then to purify
the mite Group 1 protein using conventional chromatography
techniques. Preferred is a method by which the culturing medium is
subjected to ion-exchange chromatography. Preferred ion-exchange
resins to use include cationic ion-exchange resins, particularly
SP-Sepharose (available from Amersham-Pharmacia Biotech,
Piscataway, N.J.) at about pH 4.5.
[0059] A preferred method to produce a recombinant mite Group 1
protein in E. coli is to culture a transformed E. coli
microorganism of the present invention under conditions that cause
the mite Group 1 protein to form an inclusion body within the
microorganism. Such conditions are known in the art, and examples
of such conditions are described in the Examples section, below. An
inclusion body, as used herein, is a highly aggregated, insoluble
form of a mite Group 1 protein present in the E. coli
microorganism. These inclusion bodies are thought to contain
mis-folded (i.e., improperly folded) denatured protein. Mite Group
1 protein inclusion bodies are then recovered by lysing the E. coli
microorganisms. Methods to recover inclusion bodies and purify and
refold E. coli expressed proteins are known in the art, see, for
example, Deutscher, ed., 1990, Guide to Protein Purification
Academic Press, San Diego, Calif., which is incorporated by
reference herein in its entirety. Methods to lyse E. coli are known
in the art, and include methods such as enzymatic lysis, mechanical
lysis, and liquid shear lysis; see, for example, Deutscher, ibid. A
preferred method to lyse transformed E. coli is by mechanical
means, most preferably with a microfluidizer. Insoluble proteins
can be recovered by centrifugation. To solubilize the insoluble
proteins, a variety of reagents can be used. Suitable reagents
include: guanidine-hydrochloride (HCl), preferably at a pH from
about pH 7 to about pH 8 and at a concentration of from about 5
molar (M) to about 8 M; urea, preferably at a concentration of from
about 6 M to about 8 M; sodium dodecyl sulfate; alkaline pH
(greater than pH 9); and/or acetonitrile/propanol. Preferred
methods to solubilize include use of 8 M urea in Tris buffer, pH
9.5, in 100 millimolar (mM) .beta.-mercaptoethanol. Solubilized
proteins can be refolded directly or subjected to additional
purification step(s). A preferred method is to purify the mite
Group 1 protein further before refolding. Any number of different
types of resins suitable for protein purification may be used;
preferred is an anion-exchange type resin such as, for example,
Q-SEPHAROSE.TM. resin (available from Amersham-Pharmacia Biotech).
To refold the solubilized protein directly or after purification, a
number of methods are known in the art; see, for example,
Deutscher, M. (1990), ibid. The term, refold, as used herein,
refers to conditions in which reduced proteins can revert to their
correct conformations, including restoring the correct disulfide
bridges. Preferred methods to refold include (a) using glutathione
to form mixed disulfides and/or (b) using high pH. For method (a),
steps involved include: (i) reduction of the protein with a
reducing agent, such as dithiothreitol, preferably 6 mM
dithiothreitol for at least about 30 minutes; (ii) addition of
oxidized glutathione, preferably at a concentration of from about
25 mM to about 100 mM, with about 25 mM being particularly
preferred; (iii) dilution of the mixture to a urea concentration of
preferably between about 0.5 M and 1 M, with 0.75 M urea being
particularly preferred (assuming solubilization is conducted in the
presence of urea) using a buffer, preferably 50 mM Tris, pH 9.5,
with the addition of from about 5 mM to about 25 mM, preferably 6.5
mM, cysteine or reduced glutathione; (iv) incubation for about 10
to about 20 hours at 4.degree. C.; and (v) dialysis against a
buffer to remove urea; preferred buffers are phosphate buffered
saline (PBS) at about pH 7.5 or 50 mM Tris-HCl, pH 7.5. For method
(b), steps involved include: (i) adjusting pH of the solubilized
protein to about pH 10; (ii) reducing the protein by treatment with
100 mM .beta.-mercaptoethanol; and (iii) refolding by dialysis
against PBS, pH 7.2 or 50 mM Tris-HCl, pH 7.5.
[0060] One embodiment of the present invention is a methyltrophic
yeast microorganism comprising a mite Group 1 nucleic acid molecule
of the present invention operatively linked to a transcription
control sequence. Examples of suitable yeast strains, nucleic acid
molecules and transcription control sequences are described herein.
A preferred yeast is of the genus Pichia, with the species Pichia
pastoris being even more preferred.
[0061] Another embodiment of the present invention is an isolated
nucleic acid molecule comprising a nucleic acid sequence selected
from the group consisting of SEQ ID NO:28, SEQ ID NO:30, SEQ ID
NO:31, SEQ ID NO:33, SEQ ID NO:34, SEQ ID NO:36, SEQ ID NO:37, SEQ
ID NO:39, SEQ ID NO:40, SEQ ID NO:42, SEQ ID NO:43, and/or SEQ ID
NO:45. Also included are recombinant molecules that comprise a
nucleic acid molecule selected from the group consisting of SEQ ID
NO:28, SEQ ID NO:30, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:34, SEQ
ID NO:36, SEQ ID NO:37, SEQ ID NO:39, SEQ ID NO:40, SEQ ID NO:42,
SEQ ID NO:43, and/or SEQ ID NO:45, operatively linked to a
transcription control sequence. Examples of suitable transcription
control sequences are described herein. Also included in the
present invention is a recombinant microorganism comprising a
nucleic acid molecule selected from the group consisting of SEQ ID
NO:28, SEQ ID NO:30, SEQ ID NO:31, SEQ ID NO:33, SEQ ID NO:34, SEQ
ID NO:36, SEQ ID NO:37, SEQ ID NO:39, SEQ ID NO:40, SEQ ID NO:42,
SEQ ID NO:43, and SEQ ID NO:45. Suitable host cells to transform
include any cell that can be transformed with a nucleic acid
molecule of the present invention. Host cells can be either
untransformed cells or cells that are already transformed with at
least one nucleic acid molecule (e.g., nucleic acid molecules
encoding one or more proteins of the present invention and/or other
proteins). Host cells of the present invention either can be
endogenously (i.e., naturally) capable of producing mite Group 1
proteins of the present invention or can be capable of producing
such proteins after being transformed with at least one nucleic
acid molecule of the present invention. Host cells of the present
invention can be any cell capable of producing at least one protein
of the present invention, and include bacterial, fungal (including
yeast), parasite (including helminth, protozoa and ectoparasite),
other insect, other animal and plant cells. Examples of host cells
and transcription control sequences to be used in expression of
such nucleic acid molecules include, but are not limited to, those
disclosed in U.S. patent application Ser. No. 09/292,225, filed
Apr. 15, 1999, by McCall et al (U.S. patent application Ser. No.
09/292,225); U.S. patent application Ser. No. 09/292,225, ibid., is
incorporated by reference herein in its entirety. Preferred host
cells and transcription control sequences include bacterial and
yeast cells and control sequences, with E. coli and methyltrophic
yeast, and particularly those methyltrophic yeast genera and
species disclosed herein, being more preferred.
[0062] Another embodiment of the present invention is an isolated
protein having the amino acid sequence SEQ ID NO:38 and/or SEQ ID
NO:41. The present invention also includes nucleic acid molecules
encoding such proteins, as well as recombinant molecules and
recombinant cells comprising such nucleic acid molecules.
[0063] One embodiment of the present invention is a method to
detect mite allergy in an animal, which includes the steps of: (a)
contacting an isolated mite Group 1 protein produced in accordance
with the present invention with a putative IgE-containing substance
under conditions suitable to form a complex between the mite group
1 protein and IgE (i.e., a mite Group 1 protein:IgE complex); and
(b) determining the presence of IgE reactive with the mite Group 1
protein by detecting the complex, wherein presence of reactive IgE
is indicative of mite allergy in the animal. Presence of such a
mite Group 1 protein:IgE complex (i.e. a complex between IgE and a
mite Group 1 protein of the present invention) indicates that the
animal is producing IgE reactive with mite Group 1 protein and, as
such, the animal is suffering from mite allergy or is susceptible
to mite allergy. Preferred IgE to detect using a mite Group 1
protein include any mammalian IgE, with human IgE, canine IgE,
feline IgE, equine IgE, murine IgE and rat IgE being more
preferred, with human and canine IgE being particularly
preferred.
[0064] Animals in which to detect IgE include mammals and birds,
with humans, dogs, cats, horses and other pets, work and/or
economic food animals being preferred. Particularly preferred
animals in which to detect IgE are humans and dogs. As used herein,
canine refers to any member of the dog family, including domestic
dogs, wild dogs and zoo dogs. Examples of dogs include, but are not
limited to, domestic dogs, wild dogs, foxes, wolves, jackals and
coyotes. As used herein, feline refers to any member of the cat
family, including domestic cats, wild cats and zoo cats. Examples
of cats include, but are not limited to, domestic cats, wild cats,
lions, tigers, leopards, panthers, cougars, bobcats, lynx, jaguars,
cheetahs, and servals. As used herein, equine refers to any member
of the horse family, including, but are not limited to, domestic
horses, wild horses and zoo horses.
[0065] As used herein, the term "contacting" refers to combining or
mixing, in this case a putative IgE-containing substance with a
mite Group 1 protein. Formation of a complex between a mite Group 1
protein and an IgE refers to the ability of the mite Group 1
protein to selectively bind to the IgE in order to form a stable
complex that can be measured (i.e., detected, determined). As used
herein, the term selectively binds to an IgE refers to the ability
of a mite Group 1 protein of the present invention to
preferentially bind to IgE, without being able to substantially
bind to other antibody isotypes. Binding between a mite Group 1
protein and an IgE is effected under conditions suitable to form a
complex; such conditions (e.g., appropriate concentrations,
buffers, temperatures, reaction times) as well as methods to
optimize such conditions are known to those skilled in the art, and
examples are disclosed herein. Examples of complex formation
conditions are also disclosed in, for example, Sambrook et al.,
ibid. Examples of immunological assays are disclosed in, for
example, Price, C. and Newman, D., eds, Principles and Practice of
Immunoassay, 2nd Edition, (1997) Stockton Press, New York, N.Y.,
which is incorporated by reference herein in its entirety.
[0066] As used herein, the term detecting complex formation refers
to determining if any complex is formed, i.e., assaying for the
presence (i.e., existence) of a complex. If complexes are formed,
the amount of complexes formed can, but need not be, determined.
Complex formation, or selective binding, between mite Group 1
protein and any IgE in the substance can be measured (i.e.,
detected, determined) using a variety of methods standard in the
art (see, for example, Sambrook et al. ibid.), examples of which
are disclosed herein.
[0067] As used herein a putative IgE-containing substance is any
material in which IgE antibodies may exist. In one embodiment, a
putative IgE-containing substance of the present invention includes
a biological sample from an animal. A suitable biological sample
includes, but is not limited to, a bodily fluid substance or a
cellular substance. A bodily fluid refers to any fluid that can be
collected (i.e., obtained) from an animal, examples of which
include, but are not limited to, blood, serum, plasma, urine,
tears, aqueous humor, cerebrospinal fluid (CSF), saliva, lymph,
nasal secretions, tracheobronchial aspirates, milk, feces and
fluids obtained through bronchial alveolar lavage. Such a
IgE-containing substance of the present invention can, but need not
be, pretreated to remove at least some of the non-IgE isotypes of
immunoglobulin and/or other proteins, such as albumin, present in
the fluid. Such removal can include, but is not limited to,
contacting the bodily fluid with a material, such as Protein G, to
remove IgG antibodies and/or affinity purifying IgE antibodies from
other components of the body fluid by exposing the fluid to, for
example, Concanavalin A. In another embodiment, a substance
includes collected bodily fluid that is pretreated to concentrate
immunoglobulin contained in the fluid. For example, immunoglobulin
contained in a bodily fluid can be precipitated from other proteins
using ammonium sulfate. A preferred IgE-containing substance of the
present invention is serum.
[0068] A complex can be detected in a variety of ways including,
but not limited to use of one or more of the following assays: an
enzyme-linked immunoassay, a radioimmunoassay, a fluorescence
immunoassay, a chemiluminescent or other luminescent assay, a
lateral flow assay, a flow-through assay, an agglutination assay, a
particulate-based assay (e.g., using particulates such as, but not
limited to, magnetic particles or plastic polymers, such as latex
or polystyrene beads), an immunoprecipitation assay, a BioCore.TM.
assay (e.g., using colloidal gold) and an immunoblotting assay
(e.g., a western blot). Such assays are well known to those skilled
in the art. Assays can be used to give qualitative or quantitative
results depending on how they are used. Some assays, such as
agglutination, particulate separation, and immunoprecipitation, can
be observed visually (e.g., either by eye or by a machines, such as
a densitometer or spectrophotometer) without the need for a
detectable marker. In other assays, conjugation (i.e., attachment)
of a detectable marker to a mite Group 1 protein or to a molecule
that selectively binds to the IgE being detected aids in detecting
complex formation. Examples of detectable markers include, but are
not limited to, a radioactive label, a fluorescent label, a
chemiluminescent or other luminescent label, a chromophoric label
or a ligand. A ligand refers to a molecule that binds selectively
to another molecule. Preferred detectable markers include, but are
not limited to, fluorescein, a radioisotope, a phosphatase (e.g.,
alkaline phosphatase), biotin, avidin, a peroxidase (e.g.,
horseradish peroxidase), a luciferase, and biotin-related compounds
or avidin-related compounds (e.g., streptavidin or ImmunoPure.RTM.
NeutrAvidin).
[0069] In one embodiment a complex can be formed and detected in
solution. In another embodiment, a complex can be formed in which
one or more members of the complex are immobilized on (e.g., coated
onto) a support substrate. Immobilization techniques are known to
those skilled in the art. Suitable support substrate materials
include, but are not limited to, plastic, glass, gel, celluloid,
paper, PVDF (poly-vinylidene-fluoride), nylon, nitrocellulose, and
particulate materials such as latex, polystyrene, nylon,
nitrocellulose, agarose and magnetic resin. Suitable shapes for
support substrate material include, but are not limited to, a well
(e.g., microtiter dish well), a plate, a dipstick, a bead, a
lateral flow apparatus, a flow-through apparatus, a membrane, a
filter, a tube, a dish, a celluloid-type matrix, a magnetic
particle, and other particulates. A particularly preferred support
substrate comprises an ELISA plate, a dipstick, a radioimmunoassay
plate, agarose beads, plastic beads, latex beads, immunoblot
membranes and immunoblot papers. In one embodiment, a support
substrate, such as a particulate, can include a detectable
marker.
[0070] A preferred method to detect IgE is an immunosorbent assay.
An immunoabsorbent assay of the present invention comprises a
capture molecule and an indicator molecule. A capture molecule of
the present invention binds to an IgE in such a manner that the IgE
is immobilized to a support substrate. As such, a capture molecule
is preferably immobilized to a support substrate of the present
invention prior to exposure of the capture molecule to a putative
IgE-containing substance. As such, an indicator molecule preferably
is not immobilized to the same support substrate as a capture
molecule prior to exposure of the capture molecule to a putative
IgE-containing substance.
[0071] In one embodiment, a mite Group 1 protein of the present
invention, also referred to as a mite Group 1 antigen or allergen
of the present invention, is used as a capture molecule by being
immobilized on a support substrate, such as a microtiter dish well
or a dipstick. A biological sample collected from an animal is
applied to the support substrate and incubated under conditions
suitable (i.e., sufficient) to allow for antigen:IgE complex
formation bound to the support substrate (i.e., IgE in a sample
binds to a mite Group 1 protein immobilized on a support
substrate). Excess non-bound material (i.e., material from the
biological sample that has not bound to the antigen), if any, is
removed from the support substrate under conditions that retain
antigen:IgE complex binding to the support substrate. Preferred
conditions are generally disclosed in Sambrook et al., ibid. A
detection molecule is added and incubated to allow formation of a
complex between the detection molecule and the antigen:IgE complex.
Excess detection molecule is removed, a developing agent is added
if required, and the complex is submitted to a detection device for
analysis. A preferred detection molecule for this embodiment is an
IgE-binding molecule, such as an anti-IgE isotype or idiotype
antibody, or other molecule that selectively binds IgE, for example
an IgE receptor (FcJ2) protein or alpha chain protein thereof,
examples of which are described in, for example, U.S. Pat. No.
5,945,294, issued Aug. 31, 1999, by Frank et al. (U.S. Pat. No.
5,945,294); U.S. Pat. No. 5,958,880, issued Sep. 28, 1999, by Frank
et al. (U.S. Pat. No. 5,958,880); PCT Patent Publication No. WO
98/45707, published Oct. 15, 1998, by Frank et al. (WO 98/45707);
PCT Patent Publication No. WO 99/38974, published Aug. 5, 1999, by
Weber et al. (WO 99/38974); and U.S. patent application Ser. No.
09/287,380, filed Apr. 6, 1999, by deWeck et al. (U.S. patent
application Ser. No. 09/287,380); each of these issued patents,
patent applications, and patent publications is incorporated by
reference herein in its entirety. A detection molecule is
preferably conjugated to a detectable marker such as those
disclosed herein. Also included in the present invention is the use
of multiple reagents to amplify a signal, such as secondary or
tertiary antibodies or other binding molecules.
[0072] In one embodiment, an anti-IgE antibody (e.g., isotype or
idiotype specific antibody) is used as a capture molecule by being
immobilized on a support substrate, such as a microtiter dish well
or a dipstick. A biological sample collected from an animal is
applied to the support substrate and incubated under conditions
suitable to allow for anti-IgE antibody:IgE complex formation bound
to the support substrate. Excess non-bound material, if any, is
removed from the support substrate under conditions that retain
anti-IgE antibody:IgE complex binding to the support substrate. A
mite Group 1 protein is added to the support substrate and
incubated to allow formation of a complex between the mite Group 1
protein and the anti-IgE antibody:IgE complex. Preferably, the mite
Group 1 protein is conjugated to a detectable marker such as those
disclosed herein. Excess mite Group 1 protein is removed, a
developing agent is added if required, and the sample is submitted
to a detection device for analysis. One or more antibody layers can
also be used to detect mite Group 1 protein binding.
[0073] In one embodiment, an immunosorbent assay of the present
invention does not utilize a capture molecule. In this embodiment,
a biological sample collected from an animal is applied to a
support substrate, such as a microtiter dish well or a dipstick,
and incubated under conditions suitable to allow for IgE binding to
the support substrate. Any IgE present in the bodily fluid is
immobilized on the support substrate. Excess non-bound material, if
any, is removed from the support substrate under conditions that
retain IgE binding to the support substrate. A mite Group 1 protein
is added to the support substrate and incubated to allow formation
of a complex between the mite Group 1 protein and the IgE.
Preferably, the mite Group 1 protein is conjugated to a detectable
marker. Excess mite Group 1 protein is removed, a developing agent
is added if required, and the sample is submitted to a detection
device for analysis.
[0074] Another preferred method to detect IgE is a lateral flow
assay, examples of which are disclosed in U.S. Pat. No. 5,424,193,
issued Jun. 13, 1995, by Pronovost et al.; U.S. Pat. No. 5,415,994,
issued May 16, 1995, by Imrich et al; WO 94/29696, published Dec.
22, 1994, by Miller et al.; and WO 94/01775, published Jan. 20,
1994, by Pawlak et al.; each of these patent publications is
incorporated by reference herein in its entirety. In one
embodiment, a biological sample is placed in a lateral flow
apparatus that includes the following components: (a) a support
structure defining a flow path; and (b) a labeling reagent
comprising a labeled (e.g., colored) bead conjugated to a mite
Group 1 protein of the present invention, the labeling reagent
being impregnated within the support structure in a labeling zone;
and (c) a capture reagent comprising an IgE-binding molecule, such
as an anti-IgE antibody or an IgE receptor protein or alpha chain
protein thereof. Preferred mite Group 1 proteins include those
disclosed herein. It is to be noted that in another embodiment, the
labeling reagent include an IgE-binding molecule and the capture
reagent can be a mite Group 1 protein of the present invention. In
either embodiment, the capture reagent is located downstream of the
labeling reagent within a capture zone fluidly connected to the
labeling zone in such a manner that the labeling reagent can flow
from the labeling zone into the capture zone. The support structure
defines a flow path that is lateral and includes a capture zone.
The apparatus can further comprise a sample receiving zone located
along the flow path, more preferably upstream of the capture
reagent. The flow path in the support structure is created by
contacting a portion of the support structure downstream of the
capture zone, preferably at the end of the flow path, to an
absorbent capable of absorbing excess liquid.
[0075] Another preferred method to detect IgE is a flow through
assay, examples of which are disclosed in U.S. Pat. No. 4,727,019,
issued Feb. 23, 1988, by Valkirs et al, which is incorporated by
reference in its entirety. In one embodiment, a biological sample
is placed in a flow through apparatus that includes the following
components: (a) a porous solid phase having lower and upper
surfaces arranged so that the biological sample is applied to the
upper surface, the upper surface also including a test area that
includes a capture reagent; and (b) an absorbent phase contacting
the lower surface of the solid that collects liquid from the
biological sample that has permeated the solid phase. The capture
reagent can be either a mite Group 1 protein of the present
invention or an IgE-binding molecule. After the sample flows
through the apparatus, a detection reagent is added to the
apparatus such that any captured IgE can be detected. Examples of
detection reagents include (a) a mite Group 1 protein of the
present invention, which is used when the capture reagent used is
an IgE-binding molecule and (b) an IgE-binding molecule, which is
used when the capture reagent used is a mite Group 1 protein.
Detection is accomplished using means known to those skilled in the
art.
[0076] The present invention also includes a kit to detect mite
allergy in an animal, based on each of the disclosed detection
methods. Suitable and preferred mite Group 1 proteins are disclosed
herein. One embodiment is a kit to detect IgE specific for mite
Group 1 proteins comprising a mite Group 1 protein and a means for
detecting an IgE antibody that selectively binds to a mite Group 1
protein. Suitable means of detection include compounds disclosed
herein that bind to either the mite Group 1 protein, such as an
anti-mite Group 1 protein antibody, or to IgE, such as an antibody
that selectively bind to IgE (an anti-IgE antibody) or an IgE
receptor protein or alpha chain protein thereof. In one embodiment,
a kit also includes one or more additional antigens to determine if
an animal is susceptible to or suffers from allergy to such
antigen(s). Examples of such allergens include, but are not limited
to, those disclosed in U.S. Pat. No. 5,945,294, ibid.; U.S. Pat.
No. 5,958,880, ibid.; WO 98/45707, ibid.; WO 99/38974, ibid.; and
U.S. patent application Ser. No. 09/287,380, ibid.
[0077] Additional teachings with respect to methods and kits to
detect allergy to Group 1 proteins can be found, for example, in
U.S. Pat. No. 5,646,115, issued Jul. 8, 1997, by Frank et al. (U.S.
Pat. No. 5,646,115); U.S. Pat. No. 5,840,695, issued Nov. 24, 1998,
by Frank et al. (U.S. Pat. No. 5,840,695); U.S. Pat. No. 5,932,470,
issued Aug. 3, 1999, by Frank et al. (U.S. Pat. No. 5,932,470);
U.S. Pat. No. 5,945,294, ibid.; U.S. Pat. No. 5,958,880, ibid.; WO
98/45707, ibid.; WO 99/38974, ibid.; and U.S. patent application
Ser. No. 09/287,380, ibid. U.S. Pat. No. 5,646,115, ibid., U.S.
Pat. No. 5,840,695, ibid., and U.S. Pat. No. 5,932,470 are each
incorporated by reference herein in its entirety.
[0078] One embodiment of the present invention is a composition
that, when administered to an animal in an effective manner, is
capable of reducing an allergic response to a mite Group 1 protein
in a mite Group 1 protein allergic animal. Such a composition can
function as a preventative, or prophylactic, or as a therapeutic,
or treatment. Such a composition includes an isolated mite Group 1
protein of the present invention and at least one of the following
components: an excipient, an adjuvant, and a carrier that the
animal can tolerate. Examples of excipients, adjuvants and carriers
are found throughout the art; see, for example, U.S. Pat. No.
5,958,880, ibid. and 5,840,695, ibid.
[0079] In one embodiment, a mite Group 1 protein of the present
invention can be genetically engineered or otherwise altered to
lessen or completely abolish a mite Group 1 protein's ability to
bind to IgE. Such a molecule, referred to herein as a mite Group 1
protein of the present invention with reduced IgE reactivity, can
be used to reduce an animal's allergic response to exposure to a
mite Group 1 protein.
[0080] Suitable protocols by which to administer compositions of
the present invention in an effective manner can vary according to
individual dose size, number of doses, frequency of dose
administration, and mode of administration. Determination of such
protocols can be accomplished by those skilled in the art. An
effective dose refers to a dose capable of treating an animal
against hypersensitivity to mite allergens. Effective doses can
vary depending upon, for example, the composition used and the size
and type of the recipient animal, i.e. what species. Effective
doses to immunomodulate an animal against a mite Group 1 protein
include doses administered over time that are capable of
alleviating a hypersensitive response by an animal to a mite Group
1 protein. For example, a first tolerizing dose can comprise an
amount of a composition of the present invention that causes a
minimal hypersensitive response when administered to a
hypersensitive animal. A second tolerizing dose can comprise a
greater amount of the same composition than the first dose.
Effective tolerizing doses can comprise increasing concentrations
of the composition necessary to tolerize an animal such that the
animal does not have a hypersensitive response to exposure to a
mite Group 1 protein. An effective dose to desensitize an animal
can comprise a concentration of a composition of the present
invention sufficient to block an animal from having a
hypersensitive response to exposure to a mite allergen present in
the environment of the animal. Effective desensitizing doses can
include repeated doses having concentrations of a composition that
cause a minimal hypersensitive response when administered to a
hypersensitive animal.
[0081] A suitable single dose is a dose that is capable of treating
an animal against hypersensitivity to a mite Group 1 protein when
administered one or more times over a suitable time period. For
example, a preferred single dose of a mite Group 1
protein-containing composition is from about 0.5 nanograms (ng) to
about 1 gram (g) of the protein per kilogram body weight of the
animal. Further treatments with the composition can be administered
from about 1 day to 1 year after the original administration.
Further treatments with the composition preferably are administered
when the animal is no longer protected from hypersensitive
responses to mite Group 1 proteins. Particular administration doses
and schedules can be developed by one of the skill in the art based
upon the parameters discussed above. Modes of administration can
include, but are not limited to, subcutaneous, intradermal,
intravenous, nasal, oral, transdermal and intramuscular routes.
[0082] A composition of the present invention can be used in
conjunction with other compounds capable of modifying an animal's
hypersensitivity to mite allergens. For example, an animal can be
treated with compounds capable of modifying the function of a cell
involved in a hypersensitive response, compounds that reduce
allergic reactions, such as by systemic agents or anti-inflammatory
reagents (e.g. anti-histamines, anti-steroid reagents,
anti-inflammatory reagents and reagents that drive immunoglobulin
heavy chain class switching from IgE to IgG). Suitable compounds
useful for modifying the function of a cell involved in a
hypersensitive response include, but are not limited to,
antihistamines, cromolyn sodium, theophylline, cyclosporin A,
adrenalin, cortisone, compounds capable of regulating cellular
signal transduction, compounds capable of regulating adenosine 3',
5' cyclic phosphate (cAMP) activity, and compounds that block IgE
activity, such as peptides from IgE or IgE specific Fc receptors,
antibodies specific for peptides from IgE or IgE-specific Fc
receptors, or antibodies capable of blocking binding of IgE to Fc
receptors.
[0083] A composition of the present invention can also be used in
conjunction with other antigens to prevent or treat allergic,
infectious, or other diseases. Examples of antigens causing allergy
include, but are not limited to those disclosed in U.S. Pat. No.
5,945,294, ibid.; U.S. Pat. No. 5,958,880, ibid.; WO 98/45707,
ibid.; WO 99/38974, ibid.; and U.S. patent application Ser. No.
09/287,380, ibid.
[0084] Additional teachings with respect to compositions and uses
thereof to reduce allergy can be found, for example, in U.S. Pat.
No. 5,958,880, ibid. and 5,840,695, ibid.
[0085] The following examples are provided for the purposes of
illustration and are not intended to limit the scope of the present
invention. The following examples include a number of recombinant
DNA and protein chemistry techniques known to those skilled in the
art; see, for example, Sambrook et al., ibid.
EXAMPLES
Example 1
[0086] This Example describes the production of certain novel mite
Group 1 nucleic acid molecules and proteins of the present
invention. This Example also describes expression of such nucleic
acid molecules and proteins by recombinant Pichia microorganisms of
the present invention.
[0087] A. This example describes the production and expression in
Pichia of a Der f 1 Group 1 cDNA nucleic acid molecule, denoted
herein as nDerf1.sub.909b, the coding strand of which, represented
by SEQ ID NO:28, incorporates Pichia-preferred codon changes as
compared to nDerf1.sub.909a, having a coding strand nucleic acid
sequence of SEQ ID NO:4. Nucleic acid molecule nDerf1.sub.909b
encodes a pro-form of a Der f 1 Group 1 protein, namely
PDerf1.sub.303b. The following codon changes were made to produce
nDerf1.sub.909b from nDerf1.sub.909a: a change from CGA to AGA in
the codon spanning nucleotide positions 538 to 540 of SEQ ID NO:4;
a change from CGA to AGA in the codon spanning nucleotide positions
547 to 549 of SEQ ID NO:4; a change from CGA to AGA in the codon
spanning nucleotide positions 553 to 555 of SEQ ID NO:4; and a
change from CGA to AGA in the codon spanning nucleotide positions
556 to 558 of SEQ ID NO:4. Translation of the resultant coding
strand having SEQ ID NO:28 yielded SEQ ID NO:29, also represented
as PDerf1.sub.303b. SEQ ID NO:30 represents the reverse complement
of SEQ ID NO:28, i.e., the complementary strand of
nDerf1.sub.909b.
[0088] Specifically, nucleic acid molecule nDerf1.sub.909b was
produced as follows. Two sets of two primers each were designed to
allow for selective optimization of four closely situated arginine
codons and to provide a signal peptide (the S. cerevisiae alpha
factor) coding sequence for efficient secretion of the expressed
protein from P. pastoris. The first set of two primers, the first
being sense primer 5' CGC GTC CCT CTC GAG AAA AGA GAG GCT AGA CCA
GCT TCA ATC AAA 3' (SEQ ID NO:46) and the second being the
antisense primer 5' GGG CTT TCC TTT TGC GGC CGC TCA CAT GAT TAC AAC
ATA TGG 3' (SEQ ID NO:47), incorporate XhoI and NotI cloning sites
(shown in bold) to facilitate cloning into an E. coli/P. pastoris
shuttle plasmid, pPICZalphaB (available from Invitrogen Corp.,
Carlsbad, Calif.), such that the Der f 1 nucleic acid molecule
would be operatively linked to the P. pastoris AOX promoter. Primer
SEQ ID NO:46 was constructed to join nucleotides encoding the
following amino acid segments: the C-terminal portion of the S.
cerevisiae alpha peptide (LEU-GLU), the KEX2 cleavage site
(LYS-ARG), and a GLU-ALA spacer sequence to the first residue (ARG)
of the Der f 1 pro-protein. The second set of primers, the first
being sense primer 5' GCA AGA GAA CAA AGA TGC AGA AGA CCA AAT TCG C
3' (SEQ ID NO:48), and the second being 5' GCG AAT TTG GTC TTC TGC
ATC TTT GTT CTC TTG C 3' (SEQ ID NO:49), overlap on opposite
strands of the nucleotide sequence for SEQ ID NO:4 and change CGA,
an infrequently used arginine codon for yeast, to AGA, the most
abundant codon for this residue. The changed codons for SEQ ID
NO:48 are in bold. The approximately 950-nucleotide PCR product was
generated by a three step process. In the first step, primers SEQ
ID NO:46 and SEQ ID NO:49 were combined with a D. farinae cDNA
library prepared as described in U.S. patent application Ser. No.
09/292,225, ibid., to produce an approximately 600-nucleotide
fragment. The PCR reaction included the following reactants in a 50
microliter (21) reaction volume: 2 .mu.l D. farinae cDNA library,
1.times.PFU polymerase buffer (available from Stratagene, LaJolla,
Calif.), 0.2 mM each of the four dNTPs and 2.5 Units PFU polymerase
(all available from Stratagene), 0.5 micromolar (.mu.M) of the
primers having SEQ ID NO:46 and SEQ ID NO:49. Amplification
conditions were as follows: 1 cycle of 96.degree. C. for 3 minutes,
then 30 cycles of the following: 96.degree. C. for 1 minute,
55.degree. C. for 1 minute, 72.degree. C. for 2 minutes; followed
by 1 cycle of 72.degree. C. for 7 minutes. A second PCR reaction,
using the aforementioned conditions and primers having SEQ ID NO:48
and SEQ ID NO:47, was performed resulting in an approximately
400-nucleotide product. The two PCR products were gel purified,
annealed together to form a template for a third round of PCR using
the conditions specified previously. The resulting approximately
900-nucleotide product was gel purified, digested with XhoI and
NotI, ligated into similarly digested pPICZalphaB, and transformed
into E. coli strain DH5alpha to create plasmid pBC128, also
referred to herein as recombinant molecule pBC128. The plasmid was
linearized at a unique SacI site and introduced into P. pastoris
strain X33 by electroporation as described by Guarente et al., 1991
Methods Enzymol 194, 182-187. Recombinant cells resistant to 1
milligram/milliliter (mg/ml) zeocin, presumed to have multiple
integrated copies of the linearized plasmid pBC128, were selected.
Integration of the expression cassette into the P. pastoris genome
was confirmed by PCR. Expression, using techniques known to those
skilled in the art, of representative zeocin-resistant recombinant
P. pastoris microorganisms were evaluated after induction with
methanol for two days. One recombinant cell, denoted P. pastoris
HCY215, was found to express relatively high levels of a protein of
the appropriate molecular weight by sodium dodecyl sulfate (SDS)
polyacrylamide gel electrophoresis (PAGE) and silver staining,
using methods known in the art.
[0089] B. This example describes the production and expression in
Pichia of a Der f 1 Group 1 cDNA nucleic acid molecule, denoted
herein as nDerf1.sub.669b, the coding strand of which, represented
by SEQ ID NO:31, incorporates Pichia-preferred codon changes as
compared to nDerf1.sub.669a, having a coding strand nucleic acid
sequence of SEQ ID NO:7. Nucleic acid molecule nDerf1.sub.669b
encodes a mature form of a Der f 1 Group 1 protein, namely
PDerf1.sub.223b, represented by SEQ ID NO:32. SEQ ID NO:33
represents the complementary strand of nucleic acid molecule
nDerf1.sub.669b.
[0090] An expression plasmid encoding the mature form of Der f 1
with codons altered for optimized expression in P. pastoris was
produced using recombinant molecule pBC128 (produced as described
in Example 1A) as template. pBC128 was submitted to PCR mutagenesis
using primers SB11 (sense primer with nucleic acid sequence CGC ATA
GTC CCT CTC GAG AAA AGA ACA AGC GCT TGC CGT ATC, SEQ ID NO:54) and
the primer with SEQ ID NO:47. Primer SEQ ID NO:54 incorporates a
5-prime XhoI restriction site (shown in bold) and fuses the first
codon of nDerf1.sub.669b in frame with the nucleic acid sequence
encoding the KEX2 cleavage site (LYS-ARG) of pPICZAlphaA. A single
round of PCR amplification was performed in a 50-.mu.l reaction
volume using conditions as described in Example 1A with 50 ng of
plasmid pBC128 (containing nDerf1.sub.909b, the coding strand of
which is represented by SEQ ID NO:28) as template and primers SEQ
ID NO:54 and SEQ ID NO:47. The PCR product, denoted herein as
plasmid pBC138, or recombinant molecule pBC138, is identical to
pBC128 except that pBC138 contains nDerf1.sub.669b instead of
nDerf1.sub.909b and, as such, lacks nucleic acid sequences encoding
the 80-residue "pro" peptide of Der f 1. The specific codon changes
in nDerf1.sub.669b (with a coding strand nucleic acid sequence of
SEQ ID NO:31) as compared to nDerf1.sub.669a (with a coding strand
nucleic acid sequence of SEQ ID NO:7) which encodes a wild-type D.
farinae mature-form Group 1 protein, are as follows: changes from
CGA to AGA in the codons spanning nucleotide positions (a) 298 to
300, (b) 307 to 309, (c) 313 to 315, and (d) 316-318 of SEQ ID
NO:7. Recombinant molecule pBC138 was linearized with SacI,
electroporated into competent P. pastoris strain X33 cells, and a
zeocin-resistant recombinant cell, denoted herein as HCY286 was
selected as described in Example 1A.
[0091] C. This example describes the production and expression in
Pichia of a Der f 1 Group 1 cDNA nucleic acid molecule, denoted
herein as nDerf1.sub.909d, the coding strand of which, represented
by SEQ ID NO:37, incorporates Pichia-preferred codon optimization
changes as well as a codon change that removes an N-glycosylation
site, as compared to nDerf1.sub.909a, having a coding strand
nucleic acid sequence of SEQ ID NO:4. The Der f 1 pro-form protein
PDerf1.sub.303a (SEQ ID NO:5) contains a single N-glycosylation
site (NTS) at residues 133-135 of SEQ ID NO:5. An expression
plasmid encoding a non-glycosylated pro-form of Der f 1 with codons
altered for optimized expression in P. pastoris was produced by
inverse mutagenesis using recombinant molecule pBC128 (produced as
described in Example 1A) containing nucleic acid molecule
nDerf1.sub.909b as template. The resulting recombinant molecule
contained the mutated nucleic acid molecule nDerf1.sub.909d, a Der
f 1 nucleic acid molecule in which the codon encoding asparagine
(AAC) spanning nucleotides 397 to 399 of SEQ ID NO:28 was altered
to encode glutamine (CAA) at the same positions in SEQ ID NO:37.
Nucleic acid molecule nDerf1.sub.909d encodes a pro-form of a Der f
1 Group 1 protein lacking any N-glycosylation sites, namely
PDerf1.sub.303d, represented by SEQ ID NO:38. SEQ ID NO:39
represents the complementary strand of nucleic acid molecule
nDerf1.sub.909d.
[0092] The PCR reaction included the following components in a
50-pd reaction volume: 25 ng nDerf1.sub.909b-containing plasmid
pBC128, 1.times.PFU polymerase buffer, 0.2 mM each of the four
dNTPs, 2.5 U PFU polymerase, 0.5 .mu.M primer SEQ ID NO:57 and SEQ
ID NO:58. Primers SEQ ID NO:57 (sense primer corresponding to
nucleotides (5' GCCGCAACTG AATCAGCTTA TTTGGCCTAC CGTCAAACGT CTTTGG
3') and SEQ ID NO:58 (antisense primer corresponding to nucleotides
5' GACACCAGAG AAAGCCCAAC ATGAACCACA GCCTCCTTGC ATACG 3') contain
5-prime phosphates and are situated end-to-end on opposite strands
of the DNA template. Primer SEQ ID NO:57 changes an asparagine
codon (AAC) to glutamine (CAA); the relevant nucleotides are shown
in bold in the above primer sequence. The amplification conditions
were: 1 cycle of 96.degree. C. for 3 min, 30 cycles of 96.degree.
C. for 1 min, 55.degree. C. for 1 min, 72.degree. C. for 9 min, and
1 cycle of 72.degree. C. for 7 min. The amplified product was
desalted and self-ligated to form recombinant molecule pBC158,
which contains nDerf1.sub.909d, the coding strand of which is
represented by SEQ ID NO:37. Recombinant molecule pBC158 was
linearized with SacI, electroporated into competent P. pastoris
strain X33 cells, and a zeocin-resistant recombinant cell, denoted
herein as HCY288 was selected as described in Example 1A.
Expression of recombinant cell HCY288 under conditions as described
in Example 1A yielded PDerf1.sub.303d, which when submitted to
SDS-PAGE migrated in a manner similar to that of a non-glycosylated
protein.
[0093] D. This example describes the production and expression in
Pichia of a Der f 1 Group 1 cDNA nucleic acid molecule, denoted
herein as nDerf1.sub.669c, the coding strand of which, represented
by SEQ ID NO:40, incorporates Pichia-preferred codon optimization
changes as well as a codon change that removes an N-glycosylation
site, as compared to nDerf1.sub.669a, having a coding strand
nucleic acid sequence of SEQ ID NO:7. The Der f 1 mature protein
PDerf1.sub.223a (SEQ ID NO:8) contains a single glycosylation site
(NTS) at residues 53-55 of SEQ ID NO:8. An expression plasmid
encoding a non-glycosylated mature form of Der f 1 with codons
altered for optimized expression in P. pastoris is produced from
recombinant molecule pBC158, produced as described in Example 1C,
using a strategy as described in Example 1B. That is, pBC158 is
submitted to PCR amplification in the presence of primers having
SEQ ID NO:47 and SEQ ID NO:54 under conditions as described in
Example 1B. The resultant recombinant molecule, denoted herein as
pBC168, contains mutated nucleic acid molecule nDerf1.sub.669c, a
Der f 1 nucleic acid molecule in which the codon corresponding to
that encoding asparagine (AAC) spanning nucleotides 397 to 399 of
SEQ ID NO:28 is altered to encode glutamine (CAA) in SEQ ID NO:40.
As such, nucleic acid molecule nDerf1.sub.669, encodes a mature
form of a Der f 1 Group 1 protein lacking any N-glycosylation
sites, namely PDerf1.sub.223d, represented by SEQ ID NO:41. SEQ ID
NO:41 has a Q rather than N at amino acid residue 53. SEQ ID NO:42
represents the complementary strand of nucleic acid molecule
nDerf1.sub.669a.
[0094] Recombinant molecule pBC168 is linearized with SacI,
electroporated into competent P. pastoris strain X33 cells, and a
zeocin-resistant recombinant cell selected as described in Example
1A.
Example 2
[0095] This Example describes the expression and purification of
certain recombinant mite Group 1 proteins of the present invention
from supernatant cultures of recombinant Pichia microorganisms.
[0096] Recombinant P. pastoris microorganisms, also denoted herein
as strains, were routinely cultured on YPD culture medium (1% yeast
extract, 2% peptone, 2% dextrose). His+ transformants were selected
on MD culture medium (1.34% yeast nitrogen base, 0.00004% biotin,
2% dextrose). Small-scale inductions of expression of recombinant
P. pastoris strains containing Derf1 nucleic acid molecules were
performed using BMG or BMM culture media which were composed of the
following: 100 mM potassium phosphate, pH6.0, 1.34% yeast nitrogen
base, 0.00005% biotin and either 1% glycerol (BMG) or 0.5% methanol
(BMM). For each recombinant strain grown and induced, a single
colony of that strain was inoculated into 25 ml BMG culture medium
in a 250 ml baffled flask covered with a porous silicon rubber
stopper to allow maximum aeration. The culture was grown at
28.degree. C. with shaking to an optical density (A600) of about
1.0. The culture was then pelleted for 10 min at 3000.times.g
(times gravity) and resuspended in 250 ml BMM culture medium at an
optical density (A600) of about 1.0 in a 2-liter (L) baffled flask
with a porous silicon rubber stopper to induce expression of a Der
f 1 nucleic acid molecule operatively linked to the AOX promoter.
The culture was incubated at 28.degree. C. for 4 days; methanol was
added daily to a final concentration of 0.5% volume/volume (v/v).
The entire culture volume was concentrated to 20% of original
volume by tangential flow filtration (3000 MW cutoff, available
from AG Technologies Needham, Mass.) and analyzed by SDS-PAGE.
[0097] The supernatant from the culture was recovered and diluted
1:3 (v/v) with 25 mM sodium acetate pH 4.5 (Buffer A) and loaded
onto a 1.6.times.10 mm SP-Sepharose (available from
Amersham-Pharmacia Biotech, Piscataway, N.J.) previously
equilibrated with 25 mM sodium acetate, pH 4.5. Bound protein was
eluted with a linear salt gradient to 100% Buffer B (25 mM sodium
acetate, 1 M NaCl, pH 4.5) in 20 to 25 column volumes. Fractions
(5.0 ml) were collected and analyzed by SDS-PAGE and reverse phase
RPC18 chromatography. Recombinant Der f 1 proteins produced by
recombinant P. pastoris microorganisms eluted at 0.1 to 0.15 M NaCl
and migrated as a diffuse band with an apparent molecular weight
ranging from about 40 to 46 kD. Fractions containing Der f 1
proteins (>90% homogeneous) were pooled and concentrated using a
10-kd) molecular weight cut-off (MWCO) centriprep concentrator.
[0098] The Der f 1 protein expressed by recombinant cell P.
pastoris HCY215 (P. pastoris strain X33 transformed with plasmid
pBC128 containing nucleic acid molecule nDerf1.sub.909b (coding
strand of SEQ ID NO:28) which encodes the pro-form of Der f 1
(amino acid sequence SEQ ID NO:29)), produced as described in
Example 1A, was subjected to N-terminal sequence analysis, using
methods known in the art. The N-terminal sequence obtained was
analyzed and was found to consist of a mixture of two sequences,
with the first being AETSACRINS VNVPSELDLR SLR-, denoted SEQ ID
NO:55, and the second being TSACRINSVN VPSELDLRSL R--, denoted SEQ
ID NO:56. The sequences obtained surprisingly represent the
N-terminus of mature form of the Der f protein, which indicates
that P. pastoris is able to express the Der f 1 pro-form and cleave
it to produce the mature Der f 1 protein. Since two sequences were
obtained, with the first sequence having two extra residues on the
N-terminus, it appears that P. pastoris cleaves the pro-protein
PDerf1.sub.303b (SEQ ID NO:29) at two locations: between the
asparagine at position 78 and the alanine at position 79 of SEQ ID
NO:29; and between the glutamate at position 80 and threonine at
position 81 of SEQ ID NO:29, respectively.
Example 3
[0099] This Example describes the production of certain novel mite
Group 1 nucleic acid molecules of the present invention. This
Example also describes expression of such nucleic acid molecules by
recombinant E. coli microorganisms of the present invention.
[0100] A. This example describes the production and expression in
E. coli of a Der f 1 Group 1 cDNA nucleic acid molecule, denoted
herein as nDerf1.sub.9090 the coding strand of which, represented
by SEQ ID NO:34, incorporates E. coli-preferred codon changes as
compared to nDerf1.sub.909a, having a coding strand nucleic acid
sequence of SEQ ID NO:4. Nucleic acid molecule nDerf1.sub.909c
encodes a pro-form of a Der f 1 Group 1 protein, namely
PDerf1.sub.303c. The following codon changes were made to produce
nDerf1.sub.909c from nDerf1.sub.909a: a change from CCA to CCG in
the codon spanning nucleotide positions 4 to 6 of SEQ ID NO:4; a
change from CGA to CGT in the codon spanning nucleotide positions
547 to 549 of SEQ ID NO:4; a change from CGA to CGT in the codon
spanning nucleotide positions 553 to 555 of SEQ ID NO:4; and a
change from CGA to CGT in the codon spanning nucleotide positions
556 to 558 of SEQ ID NO:4. In addition there is a change from TAT
to TAC in the codon spanning nucleotide positions 895 to 897 of SEQ
ID NO:4 to eliminate a NdeI cloning site within the Der f 1 coding
region. Translation of the resultant coding strand having SEQ ID
NO:34 yielded SEQ ID NO:35, also represented as PDerf1.sub.303c.
SEQ ID NO:36 represents the reverse complement of SEQ ID NO:34,
i.e., the complementary strand of nDerf1.sub.909c.
[0101] A PCR mutagenesis strategy similar to the one described in
Example 1A was used to produce nucleic acid molecule
nDerf1.sub.909c. Four primers (SEQ ID NO:50, 51, 52, and 53) were
used in a three step PCR process. In the first PCR step, an about
600-nucleotide PCR product was generated in a manner as described
in the first step of the PCR process described in Example 1A,
except that the primers were as follows: the sense primer SEQ ID
NO:50, 5' GGGAGCTCCA TATGCGTCCG GCTTCAATCA AAAACTT 3' and the
antisense primer SEQ ID NO:51, 5' GCGAATTTGG ACGACGGCAA CGTTGTTCAC
3'. Primer SEQ ID NO:50 incorporates a 5' NdeI restriction site,
shown in bold, and changes codon CCA, a low abundance codon in E.
coli, to CCG, the most frequently used codon for that residue; this
change is underlined. Primer SEQ ID NO:51 changes three rare ARG
codons from CGA, which is rarely used in E. coli, to CGT, the most
frequently used. In the second PCR step, an about 370-nucleotide
PCR product was generated in a manner as described in the second
step of the PCR process described in Example 1A, except that the
following primers were used: Primer SEQ ID NO:52, with a sequence
of 5' CCCTCGCGGA TCCTCACATG ATTACAACGT ATGGAT 3' incorporates a
restriction site for BamH1 (shown in bold) and changes a TYR codon
from TAT to TAC (underlined) to eliminate an NdeI cloning site
within the Der f 1 coding region; Primer SEQ ID NO:53 is a sense
primer with the sequence 5' GTGAACAACG TTGCCGTCGT CCAAATTCGC 3'.
The approximately 370-nucleotide PCR fragment generated with SEQ ID
NO:53 and SEQ ID NO:52, and the approximately 600-nucleotide
fragment produced using primers SEQ ID NO:50 and SEQ ID NO:51, were
annealed and the product was reamplified with primers SEQ ID NO:50
and SEQ ID NO:53 to produce an approximately 900-nucleotide
fragment which was gel purified, digested with NdeI and BamHI and
ligated into similarly cleaved plasmid .lamda.PRcro/T2ori/RSET-B,
produced as described in PCT Patent Publication No. WO 98/12563,
published Mar. 26, 1998, by Grieve et al. The resulting recombinant
molecule, denoted p.lamda.PR-nDerf1.sub.909c, includes
nDerf1.sub.909c operatively linked to lambda transcription control
sequences in order to enable expression of the pro-form of Der f 1
(i.e., PDerf1.sub.303c) with an initiating methionine codon for
expression in the E. coli. Recombinant molecule
p.lamda.PR-nDerf1.sub.909c was transformed into E. coli HB101 cells
to produce recombinant cell (HB101:p.lamda.PR-nDerf1.sub.909c,
which when cultured as described in Example 4 leads to production
of recombinant Der f 1 protein PDerf1.sub.303c.
[0102] B. This example describes the production and expression in
E. coli of a Der f 1 Group 1 cDNA nucleic acid molecule, denoted
herein as nDerf1.sub.669d, the coding strand of which, represented
by SEQ ID NO:43, incorporates Pichia-preferred codon changes as
compared to nDerf1.sub.669a, having a coding strand nucleic acid
sequence of SEQ ID NO:7. Nucleic acid molecule nDerf1.sub.669d
encodes a mature form of a Der f 1 Group 1 protein, namely
PDerf1.sub.223d, represented by SEQ ID NO:44. SEQ ID NO:45
represents the complementary strand of nucleic acid molecule
nDerf1.sub.669d.
[0103] Nucleic acid molecule nDerf1.sub.669d and recombinant
molecule p.lamda.PR-nDerf1.sub.669d are produced using a strategy
similar to that described in Example 1B such that the nucleotides
encoding the "pro" region are deleted from nDerf1.sub.909c and
p.lamda.PR-nDerf1.sub.909c, produced as described in Example 3A.
Recombinant molecule p.lamda.PR-nDerf1.sub.669d is transformed into
E. coli HB101 cells to produce recombinant cell
HB101:p.lamda.PR-nDerf1.sub.669d, which when cultured as described
in Example 4 leads to production of recombinant Der f 1 protein
PDerf1.sub.223d.
Example 4
[0104] This Example describes the production and purification of a
mite Group 1 protein of the present invention from E. coli.
[0105] Recombinant Der f 1 protein PDerf1.sub.303c was produced and
purified as follows. A colony of recombinant cell
HB101:p.lamda.PR-nDerf1.sub.9090 produced as described in Example
3A, was grown in a shake flask at 32.degree. C. in LB broth
containing 100 .mu.g/ml ampicillin to a cell density corresponding
to an optical density (A600) of about 0.8 to about 1.0. Expression
of Der f 1 protein PDerf1.sub.303c was induced by shifting the
temperature to 42.degree. C. and incubating for an additional 2 to
3 hours. Cells grown in shake flasks were harvested after chilling
to 4.degree. C. by centrifugation at 8000.times.g for 30 minutes in
a refrigerated centrifuge (such as Avanti J-20, Beckman Instrument
Co., Palo Alto, Calif.) Harvested cells (6 g from 2 L of cell
culture) were suspended in 60 ml breaking buffer (25 mM Tris-HCl
pH7.5) and passed five times through a microfluidizer (chilled on
ice) at 120 psi (pounds per square inch) (such as Microfluidizer
Model 1108, Microfluidic Co. Newton, Mass.) to produce a burst cell
suspension. PMSF (1.0 mM) was added to the burst cell suspension.
The cell suspension was homogenized using a polytron homogenizer
(30 seconds at full speed) and then centrifuged at 30,000.times.g
for 30 minutes. The pellet from this centrifugation (P1) was
suspended in detergent wash buffer (25 mM Tris-HCl pH7.5, 1% Triton
X, 1% deoxycholate, all components available from Sigma) at a
volume to weight ratio of 10:1, incubated 30 minutes at room
temperature, and re-centrifuged at 30,000.times.g for 30 minutes.
The pellet from this centrifugation (P2) was suspended in breaking
buffer at a volume to weight ratio of 10:1 and re-centrifuged at
30,000.times.g for 30 minutes. The pellet obtained (P3) was shown
by SDS-PAGE to contain PDerf1.sub.303c, while the supernatant
fractions from the above-mentioned centrifugations did not contain
PDerf1.sub.303c.
[0106] The pellet P3 was solubilized by homogenization in 60 ml
WIBS solubilization buffer (8M urea, 25 mM Tris-HCl, pH 9.5, 100 mM
.beta.-mercaptoethanol, all available from Sigma), incubated for 30
minutes at room temperature, and centrifuged at 30,000.times.g for
30 minutes. The supernatant from this centrifugation contained the
majority of the PDerf1.sub.303c protein.
[0107] The supernatant was diluted 1:2 (v/v) with Q-Sepharose load
buffer (8M urea, 25 mM Tris-HCl, pH7.5); the pH of the diluted
supernatant was adjusted to pH 7.5 and loaded at a flow rate of 5
ml/min onto a 10 mL Q Sepharose column (available from
Amersham-Pharmacia Biotech). The column was washed with 5 column
volumes of Q Sepharose load buffer. Bound protein was eluted with a
linear gradient to 100% Q-Sepharose elution buffer (8M urea, 1.0 M
NaCl, 25 mM Tris-HCl pH 7.5, all available from Sigma). Fractions
containing recombinant Der f 1 protein PDerf1.sub.303c were
identified by SDS-PAGE.
[0108] Fractions collected from Q Sepharose that contained
PDerf1.sub.303c were pooled and volume adjusted so that the protein
concentration was 1 to 3 mg/ml. The pooled protein fractions were
reduced by treatment with 6 mM DTT (dithiothreitol, available from
Sigma) at room temperature for 30 minutes. Following reduction,
oxidized glutathione, 25 to 125 mM, was added to induce the
formation of mixed disulfides of the cysteine residues of
PDerf1.sub.303c. Refolding was initiated by rapid dilution to 0.5
to 1.0 M urea using 50 mM Tris, pH 9.5, with the addition of 5 to
25 mM of either reduced glutathione or cysteine. This mixture was
incubated at 4.degree. C. for 10 to 20 hours with slow mixing. The
mixture was then dialyzed against either PBS, pH 7.5 or 50 mM
Tris-HCl pH 7.5, then centrifuged at 30,000.times.g for 30 minutes.
The resulting supernatant contained properly refolded
PDerf1.sub.303c. Purified, refolded PDerf1.sub.303c from E. coli
was subjected to N-terminal amino acid sequencing, using methods
known in the art. The N-terminal sequence obtained was MRPASIKTFE
EFKKAFNKNY ATV-, represented herein as SEQ ID NO:59. This sequence
is identical to that of the N-terminal sequence of pro-Derf 1 (SEQ
ID NO:4) with the addition of methionine; thus the E. coli
expressed and refolded Der f 1 protein appears to be the expected
PDerf1.sub.303c.
Example 5
[0109] This Example demonstrates the ability of recombinant
Pichia-expressed and E. coli-expressed Der f 1 proteins of the
present invention to bind to IgE from a number of mite allergic
sera and compares such binding to that obtained using native
purified Der f 1 proteins or mite extracts.
[0110] Two samples of native purified Der f 1 protein were used.
The first, denoted herein as Heska native Derf1, was purified as
described in U.S. patent application Ser. No. 09/292,225, ibid. The
second, denoted Chapman native Derf1, was purified in the
laboratory of Martin Chapman (University of Virginia Health
Sciences Center, Charlottesville, Va.) in the manner described in
Lombardero, et al, 1990, J Immunology 144, 1353-1360. Recombinant
Der f 1 proteins expressed by P. pastoris transformed with nucleic
acid molecule nDerf1.sub.909b or nDerf1.sub.669b, i.e.,
PDerf1.sub.303b or PDerf1.sub.223b, respectively, were produced as
described in Examples 1 and 2. Note that although the protein
produced using nDerf1.sub.909b is referred to as PDerf1.sub.303b,
that protein is actually a mature form of Der f 1, as processed by
P. pastoris; see Example 2. Recombinant Der f 1 protein expressed
by E. coli transformed with nucleic acid molecule nDerf1.sub.909c,
i.e., PDerf1.sub.303c, was produced as described in Example 4.
Whole D. farinae and D. pteronyssinus mite extracts were prepared
using techniques known to those skilled in the art; see, for
example, U.S. patent application Ser. No. 09/292,225, ibid.
[0111] Native or recombinant Der f 1 proteins in 100 .mu.l CBC
buffer (50 mM sodium carbonate, pH 9.6) were coated onto wells (100
ng per well) of Immulon II microtiter plates (available from Dynex
Technologies, Chantilly, Va.) by incubation at 4.degree. C.,
covered, overnight. Excess fluid was removed and wells were blocked
with 200 .mu.l Assay Buffer (4% fetal calf serum (available from
Summit Laboratories, Fort Collins, Colo.) in phosphate buffered
saline (PBS, recipe in Sambrook, ibid.), plus 0.05% Tween-20
(available from Sigma, St. Louis, Mo.)) for one hour at room
temperature. Plates were then washed for 4 cycles on an automatic
plate washer (Ultrawash, available from Dynatech Laboratories)
using PBS with 0.05% Tween-20. The following serum samples, 100
.mu.l per well, diluted 1:20 in Assay Buffer, were incubated
overnight at 4.degree. C.: separate serum samples collected from
humans or dogs as indicated in Tables 1, 2 and 3; a pool of
mite-allergic human sera; and a pool of mite-allergic dog sera.
Control wells were treated identically except that no serum was
added. Plates were then washed as described above. Biotinylated
human IgE receptor alpha chain (Fc.sub..epsilon.R1.alpha.-biotin)
(100 .mu.l of 1.3 ng/ml) prepared as described in U.S. Pat. No.
5,945,294, ibid., was added and incubated for one hour at room
temperature. After this incubation, plates were washed as described
above. Streptavidin-horseradish peroxidase conjugate (0.5 mg/ml,
available from KPL Labs, Gaithersburg, Md.) was added at a 1:5000
dilution in Assay Buffer for one hour at room temperature, after
which plates were washed as described above. TMB Peroxidase
substrate system, 2 part (available from KPL Labs, #0-76-00), added
at 100 .mu.l per well, was used according to the manufacturer's
directions. The color reaction was allowed to proceed until good
color development was reached (about 10-15 min); then the reaction
was stopped with 100 .mu.l per well of 1 M phosphoric acid. Bound
IgE was determined by measuring absorbance (Optical Density, or OD)
at 450 nm (nanometers) using an ELISA plate reader (such as
Spectramax", Molecular Devices, Sunnyvale, Calif.). Background OD
readings in the control wells were subtracted from all numbers.
Results are reported in Tables 1, 2 and 3 as OD multiplied by 1000.
OD numbers greater than 100 are considered to be positive for a
reaction with IgE. P. pastoris-expressed proteins are denoted in
the Tables as Pichia expressed proteins.
TABLE-US-00001 TABLE 1 Assay Number 1. Binding of IgE from
mite-allergic human and dog sera to recombinant Pichia-expressed
Derf1, to recombinant E. coli-expressed Derf1, to native purified
Derf1 protein, or to whole D. farinae or D. pteronyssinus extracts.
OD, OD, OD, OD, E. coli Chapman Heska Pichia OD, Whole OD,
expressed native native expressed D. farinae Whole D. pteronyssinus
Serum PDerf1.sub.303c Derf1 Derf1 PDerf1.sub.303b extract extract
human 1916 18 17 51 11 25 66 human 3848 2291 2336 3123 1192 3871
4200 human 3958 147 1261 3368 2244 3411 4134 human 3960 1442 1024
2279 646 4048 4200 human 3961 67 326 1479 433 490 1130 human 3987
1416 1216 3741 1377 2836 3816 human 4289 29 287 777 182 1318 1746
human 4467 236 615 1302 694 2527 2994 human 5207 1902 2669 3051
2153 3459 3933 human pool 883 1531 1732 1547 3128 3499 dog pool 615
341 750 364 3487 3643 dog-1 0 6 3 21 6 7 dog-2 258 1408 2245 1490
2453 1876 dog-3 45 3125 2839 2499 2857 928
[0112] The data in Table 1 indicate that serum samples collected
from 8 mite-allergic humans and the pooled human sera sample bound
to (i.e., showed reactivity with) native Der f 1 proteins; all 9
samples were also reactive to recombinant P. pastoris-expressed
PDerf.sub.303b protein; i.e., the recombinant P. pastoris-expressed
Der f 1 protein bound to 100% of the samples that bound to native
Der f 1 proteins. Additionally, of the 3 mite-allergic dog serum
samples reactive to native Der f 1 proteins, all 3 samples were
also reactive (i.e., 100% reactivity) to recombinant P.
pastoris-expressed PDerf.sub.303b. The results of this assay
indicate that the P. pastoris-expressed recombinant PDerf.sub.303b
has the same relative IgE binding activity compared to the native
Der f 1 protein, indicating that the soluble Pichia expressed
molecule is functionally equivalent to the native molecule with
respect to ability to bind IgE specific for mite allergy.
[0113] Furthermore, the data in Table 1 indicate that of the 9
mite-allergic human serum samples reactive to native Der f 1
proteins, 7 samples were also reactive (i.e., 78% reactivity) to
recombinant E. coli-expressed PDerf1.sub.303c protein. In addition,
the E. coli-expressed protein bound to 1 of 2 dog serum samples
that bound to native Der f 1 proteins. These results indicate that
the pro-form of Der f 1 protein, expressed in E. coli and purified
as described in Examples 3 and 4 has a biologically active
conformation that can bind to at least about 70% of serum samples
that bind to native Der f 1 protein.
TABLE-US-00002 TABLE 2 Assay Number 2. Binding of IgE from
mite-allergic or normal human and dog sera to recombinant
Pichia-expressed Derf1, to recombinant E. coli-expressed Derf1, to
native purified Derf1 protein, or to whole D. farinae or D.
pteronyssinus extracts. OD, OD, OD, OD, OD, E. coli- Chapman Heska
Pichia- Whole OD, expressed native Native expressed D. farinae
Whole D. pteronyssinus Serum PDerf1.sub.303c Derf1 Derf1
PDerf1.sub.303b extract extract human 1916 21 8 62 15 43 62 human
3848 2378 1726 2362 904 3669 4200 human 3958 247 822 2235 2369 3052
4033 human 3960 944 522 1308 1046 3386 3732 human 3961 46 169 784
709 513 1109 human 3987 1477 846 2664 2457 2358 3673 human 4289 47
173 589 160 1205 1665 human 4467 277 353 1051 660 2210 3011 human
5207 2122 2171 2746 1304 3215 3856 human pool 1161 1236 2599 1551
2886 3721 Heska human B 0 0 0 2 24 45 Heska human C 4 0 0 4 5 5
Heska human D 0 0 0 0 0 0 Heska human E 10 2 19 1 42 38 Heska human
F 0 0 0 0 0 0 Heska human G 0 0 1 0 8 2 Heska human H 0 0 0 0 142
121 Heska human I 1 0 1 4 4 4 Heska human J 0 0 1 0 71 74 Heska
human K 0 0 0 0 0 0 Heska human L 0 0 0 0 35 32 Heska human M 0 0
51 0 448 573 Heska human N 24 373 885 370 521 763 Heska human O 2 0
0 0 16 27 Heska human P 0 0 0 0 1 7 Heska human Q 0 0 0 0 1 7 Heska
human R 0 0 1 0 94 58 dog sera pool A 489 220 449 199 3120 3521 146
dog sera pool 68 19 101 27 3665 4200 KS338
[0114] The results of Table 2 indicate that of the 10 human serum
samples with IgE that bound to native Der f 1 proteins, IgE in all
10 samples also bound to recombinant P. pastoris-expressed
PDerf.sub.303b protein; i.e., the recombinant P. pastoris-expressed
Der f 1 protein bound to 100% of the samples that bound to native
Der f 1 proteins. Additionally, IgE from serum collected from a
mite-allergic dog also bound to the recombinant P.
pastoris-expressed Der f 1 protein. The results of this assay
indicate that the P. pastoris-expressed recombinant Der f1 protein
expressed from nDerf1.sub.909b has equivalent IgE binding activity
compared to the native Derf1.
[0115] Furthermore, the data in Table 2 indicate that of the 10
mite-allergic human serum samples reactive to native Der f 1
proteins, 7 samples were also reactive (i.e., 70% reactivity) to
recombinant E. coli-expressed PDerf1.sub.303c protein. In addition,
the E. coli-expressed protein bound to the dog serum sample that
bound to native Der f 1 proteins. These results indicate that the
pro-form of Der f 1 protein, expressed in E. coli and purified as
described in Examples 3 and 4 has a biologically active
conformation that can bind to at least about 70% of serum samples
that bind to native Der f 1 protein.
TABLE-US-00003 TABLE 3 Binding of IgE from mite-allergic human and
dog sera to recombinant Pichia-expressed PDerf1.sub.303b,
PDerf1.sub.223b, and to purified native mature Der f 1 protein. OD,
Derf1, OD, Pichia-expressed OD, Pichia-expressed Chapman
PDerf1.sub.303b, preparation PDerf1.sub.223b, Sera native number
A166-26 prepararion 1000-7 1916 14 0 0 3848 1033 457 1253 3958 1067
2616 1224 3960 738 1420 634 3961 221 744 301 3987 865 2588 1078 429
152 104 63 4467 489 780 432 5207 1836 1887 1096 human 1114 1226 774
pool
[0116] The data in Table 3 indicate that Der f 1 proteins expressed
by recombinant P. pastoris microorganisms transformed with nucleic
acid molecules encoding the pro-form or mature form of Der f 1
protein (i.e., with nDerf1.sub.909b or nDerf1.sub.669b,
respectively), bind to IgE in serum from human patients with
essentially the same reactivity as does native Der f 1 protein. As
such, the soluble P. pastoris-expressed Der f 1 proteins exhibit
closely equivalent IgE binding activity as the native Der f 1
protein, indicating that they are expressed in a biologically
active conformation.
Example 6
[0117] This Example demonstrates the ability of recombinant P.
pastoris and E. coli Der f 1 proteins of the present invention to
bind to anti-Der f 1 protein monoclonal antibodies.
[0118] Assays were carried out as follows. A microtiter plate as
described in Example 5 was coated overnight at 4.degree. C. with
100 ng/well of anti-Der f 1 protein monoclonal antibody 6A8,
denoted herein as anti-Der f 1 MAb 6A8, provided by Dr. Martin
Chapman. The plate was washed in the manner described above. The
following proteins were then added to wells, having been diluted in
Assay Buffer in a 2-fold dilution series, from 0.75 to 50 ng/well:
Heska native Derf1, P. pastoris-expressed PDerf1.sub.303b, and E.
coli-expressed PDerf1.sub.303c. After incubation for 1 hour at room
temperature, plates were washed as described in Example 5. Then 100
.mu.l per well of a 1:1000 dilution in Assay Buffer of biotinylated
anti-Der f 1 monoclonal antibody 4C1, also denoted anti-Der f 1 MAb
4C1, provided by Dr. Martin Chapman, was added for 1 hour at room
temperature. Plates were washed, streptavidin-HRP conjugate was
added, and plates were developed as described in Example 5. Results
are provided in Table 4.
TABLE-US-00004 TABLE 4 Monoclonal Capture ELISA. OD of native Der f
1 protein, Pichia- expressed Der f 1 protein, or E. coli-expressed
Der f 1 protein captured by anti-Der f 1 MAb 6A8 and detected by
anti-Der f 1 MAb 4C1. ng protein OD, OD, E. coli expressed OD,
Pichia expressed per well native Derf1 PDerf1.sub.303c
PDerf1.sub.303b 50 2183 1983 2148 25 2142 1770 2156 2.5 2291 1372
2088 6.25 2197 890 1961 3.1 2219 503 1544 1.5 2043 268 916 0.75
1740 136 405
[0119] The results from Table 4 indicate that the binding
activities of P. pastoris-expressed PDerf1.sub.303b and E. coli
expressed PDerf1.sub.303c, as measured in a monoclonal antibody
capture assay with monoclonal antibodies 6A8 and 4C1, are similar
to that of the native Der f 1 protein.
Example 7
[0120] This Example demonstrates that a recombinant P.
pastoris-expressed recombinant Der f 1 protein of the present
invention has cysteine protease activity.
[0121] Native Der f 1 is believed to be a cysteine protease, based
on homology to papain; see, for example, Chua et al, 1992, J Exp
Med 167, 175-182. The Der f 1 protein secreted as a mature form by
recombinant cell P. pastoris HCY215 (i.e., P. pastoris strain X33
transformed with plasmid pBC128 containing nucleic acid molecule
nDerf1.sub.909b (coding strand of SEQ ID NO:28) which encodes the
pro-form of Der f 1 (amino acid sequence SEQ ID NO:29)) was tested
for cysteine protease activity in the following manner. Three
concentrations of protein were tested for their abilities to cleave
an artificial substrate in the presence or absence of a cysteine
protease inhibitor. Specifically, three pairs of samples containing
0.56 .mu.g, 1.1 .mu.g, or 5.6 .mu.g of P. pastoris-expressed Der f
1 protein, respectively, were incubated for 30 minutes at room
temperature in 20 .mu.l of 50 mM Tris-HCl, pH 8. One member of each
pair also contained the irreversible cysteine protease inhibitor
E-64 at a concentration of 1 .mu.g/ml. After the pre-incubation,
100 .mu.l of 50 .mu.M quenched fluorogenic substrate
z-Val-Leu-Arg-AMC (available from Enzyme Systems Products,
Livermore, Calif.) was added to all six samples, and the samples
were incubated for 2 hours at room temperature. Fluorescence was
measured using a Perkin Elmer Luminescence Spectrometer (model
#LS50B) at an excitation wavelength of 380 nm and an emission
wavelength of 460 nm. The results are shown in Table 5.
TABLE-US-00005 TABLE 5 Cysteine protease activity of P.
pastoris-expressed Der f 1 protein (rDer f 1) Micrograms %
Inhibition by rDer f 1 Emission (w/o E-64) Emission (w/ E-64) E-64
5.6 9.671 2.369 76 1.1 1.693 0.765 55 0.56 0.861 0.302 65
[0122] These results indicate that the recombinant P.
pastoris-expressed Der f 1 protein exhibits cysteine protease
activity that can be inhibited by pre-incubation with the cysteine
protease inhibitor E-64. These results, combined with the IgE
binding data of Examples 5 and 6, indicate that recombinant Der f 1
protein expressed by P. pastoris is secreted in a biologically
active conformation.
Example 8
[0123] This Example demonstrates that a Der f 1 protein of the
present invention lacking an N-glycosylation site selectively binds
to IgE in sera collected from mite allergic human patients in a
manner similar to a Der f 1 protein having such a site.
[0124] A. The following Der f 1 proteins were reacted as described
in Example 5 with a pool of serum samples collected from 16
mite-allergic human patients: (a) Chapman native Der f 1, produced
as described in Example 5; (b) recombinant Der f 1 protein
PDerf1.sub.303b, produced by recombinant cell P. pastoris HCY215
(P. pastoris strain X33 transformed with plasmid pBC128 containing
nucleic acid molecule nDerf1.sub.909b (coding strand of SEQ ID
NO:28) which encodes the pro-form of Der f 1 (amino acid sequence
SEQ ID NO:29)), produced as described in Example 1A; and (c)
recombinant Der f 1 protein PDerf1.sub.303d, a Der f 1 protein
lacking an N-glycosylation site produced by recombinant cell P.
pastoris HCY288 (P. pastoris strain X33 transformed with plasmid
pBC158 containing nucleic acid molecule nDerf1.sub.909d (coding
strand of SEQ ID NO:37) which encodes the pro-form of Der f 1 in
which the asparagine at amino acid position 133 is replaced by
glutamine (amino acid sequence SEQ ID NO:38)), produced as
described in Example 1A. Table 6 shows the results of this assay,
conducted at a variety of Der f 1 protein concentrations.
TABLE-US-00006 TABLE 6 Binding of IgE from pooled mite-allergic
human sera to recombinant Pichia-expressed PDerf1.sub.303b,
PDerf1.sub.303d, and to purified native mature Der f 1 protein. ng
protein OD, native OD, Pichia expressed OD, Pichia expressed per
well Der f 1 PDerf1.sub.303b PDerf1.sub.303d 200 584 484 1448 100
581 354 1097 50 488 293 779 25 215 240 591 12.5 116 178 347 6.2 17
53 88
[0125] These results demonstrate that P. pastoris-expressed Der f 1
protein does not require an N-glycosylation site to selectively
bind IgE in mite-allergic sera at least as well as native Der f 1
protein or P. pastoris-expressed Der f 1 protein with such a site.
As such, it appears that N-linked glycosylation is not necessary
for Der f 1 protein to react with IgE from mite allergic sera.
[0126] B. The Der f 1 proteins described in Example 8B were reacted
as described in Example 6 with a pool of serum samples collected
from 16 mite-allergic human patients. Table 7 shows the results of
this assay, conducted at a variety of Der f 1 protein
concentrations.
TABLE-US-00007 TABLE 7 Monoclonal Capture ELISA. Binding of IgE
from pooled mite-allergic human sera to recombinant
Pichia-expressed PDerf1.sub.303b, PDerf1.sub.303d, and to purified
native mature Der f 1 protein. ng protein OD, native OD, Pichia
expressed OD, Pichia expressed per well Der f 1 PDerf1.sub.303b
PDerf1.sub.303d 25 2249 2389 3007 12.5 2483 2388 3037 6.25 2620
2463 2991 3.1 2597 2103 2913 1.55 2447 1399 2626 0.78 2186 871 1963
0.39 1480 434 1380
[0127] These results further demonstrate that P. pastoris-expressed
Der f 1 protein does not require an N-glycosylation site to
selectively bind IgE in mite-allergic sera at least as well as
native Der f 1 protein or P. pastoris-expressed Der f 1 protein
with such a site. As such, it appears that N-linked glycosylation
is not necessary for Der f 1 protein to react with IgE from mite
allergic sera.
Example 9
[0128] This example describes the production of nucleic acid
molecules encoding Der p 1 proteins for expression in E. coli.
A. Nucleic Acid Molecules Encoding the Pro Form of Der p1.
[0129] A three step PCR, using four oligonucleotides, was used to
amplify a DNA fragment containing pro Der p 1 for cloning into
expression plasmid pLambda Cro (produced as described in PCT Patent
publication No. WO98/12563, hereinafter pLambdaCro). This process
is analogous to that described for pro Der f 1 in Example 3, p. 63,
to produce nDerf1.sub.909c.
[0130] Two separate PCR amplification reactions were performed: one
used forward and reverse primers EB160 with nucleic acid sequence
5'-AGGAGACATATGCGTCCATCCTCGATCAAAACTTTTG, designated herein as SEQ
ID NO:60, and EB163, with nucleic acid sequence
5'-TTGTGCATTTGGACGACGGCATGATTGTTCTC, designated herein as SEQ ID
NO:61, and 2.times.10.sup.7 plaque forming units (PFU) of a D.
pteronyssinus cDNA library prepared from whole body mites in Lambda
Zap (Stratagene, La Jolla, Calif.).
[0131] The other amplification reaction used forward and reverse
primers EB161, with nucleic acid sequence
5'-TCACCCTGGATCCCTACAGGATGACAACGTATGGATATTC, designated herein as
SEQ ID NO:62, and EB162, with nucleic acid sequence
5'-GAGAACAATCATGCCGTCGTCCAAATGCACAA, designated herein as SEQ ID
NO:63 and 2.times.10.sup.7 PFU D. pteronyssinus cDNA library.
Conditions for amplifying and purifying the .about.0.6 and
.about.0.4 kb fragments were as described in Example 3. The
.about.0.6 and .about.0.4 kb fragments were annealed together and
reamplified in vitro using primers EB160 and EB161, which
incorporate Nde1 (EB160) and BamH1 (EB161) restriction sites. The
resulting 0.9 kb fragment was purified, digested with Nde1 and
BamH1 and subcloned into similarly digested pLambdaCro to produce
plasmid pBC194. The pro Der p 1 coding sequence of pBC194 has 909
bases, and is designated herein as SEQ ID NO:64, and the reverse
complement is designated as SEQ ID NO:66. The codon optimized
arginine residues are encoded by positions 553 through 558 of SEQ
ID NO:64. The predicted amino acid sequence is SEQ ID NO:65.
B. Nucleic Acid Molecules Encoding the Mature Der p 1
[0132] The mature form of Derp1 was amplified from pBC194 DNA using
Pfu polymerase and the following conditions: 1.times. manufacturers
Pfu buffer, 0.2 mM each dNTP, 0.4 uM each a) forward primer, KB20,
with nucleic acid sequence
5'-AAAAAAAAACATATGACTAACGCCTGCAGTATCAATGGAAATG, designated herein
as SEQ ID NO:67, and b) reverse primer KB21, with nucleic acid
sequence 5'-AAAAAAAAACTCGAGCTACAGGATGACAACGTATGGATATTC, designated
herein as SEQ ID NO:68, 26 ng pBC194, and 2.5 U Pfu polymerase, in
a 50 ul reaction volume. Amplification conditions were as follows:
1 cycle of 95 C for 2 min, 30 cycles of [95 C for 1 min, 55 C for 1
min, 70 C for 1 min], one cycle of 70 C for 10 min.
[0133] The resulting fragment was purified, digested with Nde1 and
Xho 1, and subcloned into similarly digested pLambdaCro to produce
plasmid pBC204. The mature Der p 1 coding sequence of pBC204 has
669 bases, and is designated herein as SEQ ID NO:69, and the
reverse complement is designated as SEQ ID NO:71. The predicted
amino acid sequence is SEQ ID NO:70.
Example 10
[0134] This example describes the production of nucleic acid
molecules encoding Der p1 proteins for expression in P. pichia.
A. Nucleic Acid Molecules Encoding Pro Der p 1
[0135] Four oligonucleotide primers were used to assemble an
.about.900 bp fragment containing a version of pro Der p 1 with
selected arginine residues optimized for yeast codon bias. Primers
EB132 and EB131 change arginine residues specified by either CGA or
CGT to AGA, the preferred codon in yeast (S. cerevisiae). Forward
primer EB130, with nucleic acid sequence
5'-GTGGCTCTCGAGAAGAGAGAGGCTCGTCCATCTTCCATCAAAACT, designated herein
as SEQ ID NO:72, and reverse primer EB131, with nucleic acid
sequence 5'-CCGAATCTTTGTGCATTTGGTCTTCTGCATGATTGTTCTCGTGC,
designated herein as SEQ ID NO:73, were used in combination with
template DNA from a Lambda Zap cDNA library and appropriate salts,
enzymes, etc. (as described in Example 1, p. 56) to produce an
.about.0.6 kb DNA fragment. Forward primer EB132, with nucleic acid
sequence 5'-GCACGAGAACAATCATGCAGAAGACCAAATGCACAAAGATTCGG,
designated herein as SEQ ID NO:74, and reverse primer EB133, with
nucleic acid sequence 5'-GCTCTTGCGGCCGCTTACAAAATGACAACGTATGGATA,
designated herein as SEQ ID NO:75, were used to amplify an
approximately 0.4 kb DNA fragment. The resulting 0.6 and 0.4 kb PCR
fragments were annealed and reamplified using primers EB130 and
EB133 to produce an .about.0.9 kb DNA fragment that was subcloned
as a Xho 1-Not 1 fragment into similarly digested pPICZalpha B. The
resulting plasmid was designated pBC169.
[0136] The Pro Der p 1 coding sequence of pBC169 has 906 bases, and
is designated herein as SEQ ID NO:76, and the reverse complement is
designated as SEQ ID NO:78. The predicted amino acid sequence is
designated SEQ ID NO:77.
B. Nucleic Acid Molecules Encoding Mature Der p 1
[0137] An expression plasmid for secreting the mature form of Der p
1 from Pichia was constructed using forward primer EB154, with
nucleic acid sequence
5'-GGGGTATCTCTCGAGAAGAGAACTAACGCCTGCAGTATCAATG, designated herein
as SEQ ID NO:79, and reverse primer EB155, with nucleic acid
sequence 5'-AAGCTGGCGGCCGCTTACAAAATGACAACGTATGGATATTC, designated
herein as SEQ ID NO:80, and plasmid pBC169 as template DNA.
Conditions for amplification and cloning were as described for the
analogous plasmid for expressing mature Der f 1 in Pichia (See
Example 1B, p. 57-58). The resulting molecule was digested with Xho
1 and Not 1, and inserted into similarly digested pPICZ.alpha.A to
form pBC185. The mature Der p 1 coding sequences of pBC185 has 666
nucleotides and is designated herein as SEQ ID NO:81, and the
reverse complement is designated herein as SEQ ID NO:83. The
expected protein product of mature Der p 1 has 222 amino acids, and
is designated herein as SEQ ID NO:82.
Example 11
[0138] This example describes the production of an N-Glycosylation
site mutant of pro Der p 1 for expression in Pichia.
[0139] Residues 52 to 54 of mature Der p 1 (SEQ ID NO:82) contain a
putative N-linked glycosylation site: NQS. A cloning strategy
analogous to one the described for pro Der f 1 (N53Q) (Example 1C,
p. 58) was used to mutate residue serine 54 (TCA) of the mature Der
p 1 (SEQ ID NO:81) to glycine (GGT). Forward and reverse primers
for mutagenic PCR were EB146, with nucleic acid sequence
5'-AAATAAGCTGATTCAGTTGCGGCAACACCAGAG, designated herein as SEQ ID
NO:84, and EB147, with nucleic acid sequence
(5'-GGCTTACCGTAATCAAGGTTTGGATCTTGCTG, designated herein as SEQ ID
NO:85, respectively. The DNA template for mutagenic PCR was plasmid
pBC169. The amplified fragment was digested with Xho1 and Not1 and
inserted into similarly digested pPICZ.alpha.A. The plasmid with
the mutated sequence (pro Der p 1 S54G) was designated pBC175. The
pro Der p1 S54G encoding sequence is 906 nucleotides and has the
sequence designated herein as SEQ ID NO:86, and the reverse
complement is designated as SEQ ID NO:88. The predicted amino acid
sequence is SEQ ID NO:87, and has a glycine at residue 54, rather
than the serine present at that position in SEQ ID NO:82.
Example 12
[0140] This Example describes the production of a variant of a mite
Group 1 protein of the present invention in which the pro-peptide
is expected to be unable to self-process.
[0141] The in vitro protease activity of rDer f 1, combined with
the observation that Pichia strains engineered to produce pro-Der f
1 secrete mature Der f 1, suggests that the pro-peptide undergoes
self-processing.
[0142] A version of pro Der f 1 with a residue change at C35 of SEQ
ID NO:32, the predicted active site cysteine, was produced
(pBC182).
[0143] Plasmid pBC182 was constructed by mutagensis of plasmid
pBC128 (pro Der f 1). Primers for inverse PCR were EB152, with
nucleic acid sequence 5'P-GCTGTGGTTCATCTTGGGCTTTCTCTGGTGTT,
designated herein as SEQ ID NO:89, and EB153, with nucleic acid
sequence 5'P-CTCCTTGCATACGGATTGGAGTGACAGTTCGC, designated herein as
SEQ ID NO:90. Template DNA was pBC128. Conditions for amplification
and cloning were as described in Example 1C (page 58). The
amplified fragment was digested with Xho 1 and Not 1, and inserted
into similarly digested pPICZAlphaB to form pBC182. The pro Der f1
C35S coding sequence of pBC182 has 909 nucleotides, and is
designated herein as SEQ ID NO:91, and the reverse complement is
designated as SEQ ID NO:93. The cys to ser change introduced by
primer EB152 is at position 35 of the protein sequence, which is
designated herein as SEQ ID NO:92.
[0144] The resulting rDer f 1 is expected to be secreted from
Pichia as the pro-enzyme form if the processing event is
self-catalyzed. The analogous variant of Der p 1 is made at
position C34 of SEQ ID NO:82. In the above example, the active site
cysteine was changed to serine. In another embodiment of the
invention, the coding sequences may be mutated to substitute either
valine or alanine at that position.
[0145] Another possible residue to target is H171 of Der f 1 of SEQ
ID NO:32 and H170 of Der p 1 of SEQ ID NO:82. The Cys and His
residues are postulated to form an active site thiolate-imidazolium
ion pair. Disruption of this pair could impair the proteolytic
function of the protein and the mutant is therefore expected to be
impaired in self-processing. The histidines may be changed to
another amino acid, preferably alanine.
[0146] While various embodiments of the present invention have been
described in detail, it is apparent that modifications and
adaptations of those embodiments will occur to those skilled in the
art. It is to be expressly understood, however, that such
modifications and adaptations are within the scope of the present
invention, as set forth in the following claims.
Sequence CWU 1
1
931963DNADermatophagoides farinaeCDS(1)..(963) 1atg aaa ttc gtt ttg
gcc att gcc tct ttg ttg gta ttg agc act gtt 48Met Lys Phe Val Leu
Ala Ile Ala Ser Leu Leu Val Leu Ser Thr Val1 5 10 15 tat gct cgt
cca gct tca atc aaa act ttt gaa gaa ttc aaa aaa gcc 96Tyr Ala Arg
Pro Ala Ser Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala 20 25 30 ttc
aac aaa aac tat gcc acc gtt gaa gag gaa gaa gtt gcc cgt aaa 144Phe
Asn Lys Asn Tyr Ala Thr Val Glu Glu Glu Glu Val Ala Arg Lys 35 40
45 aac ttt ttg gaa tca ttg aaa tat gtt gaa gct aac aaa ggt gcc atc
192Asn Phe Leu Glu Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile
50 55 60 aac cat ttg tcc gat ttg tca ttg gat gaa ttc aaa aac cgt
tat ttg 240Asn His Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg
Tyr Leu65 70 75 80atg agt gct gaa gct ttt gaa caa ctc aaa act caa
ttc gat ttg aat 288Met Ser Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln
Phe Asp Leu Asn 85 90 95 gcc gaa aca agc gct tgc cgt atc aat tcg
gtt aac gtt cca tcg gaa 336Ala Glu Thr Ser Ala Cys Arg Ile Asn Ser
Val Asn Val Pro Ser Glu 100 105 110 ttg gat tta cga tca ctg cga act
gtc act cca atc cgt atg caa gga 384Leu Asp Leu Arg Ser Leu Arg Thr
Val Thr Pro Ile Arg Met Gln Gly 115 120 125 ggc tgt ggt tca tgt tgg
gct ttc tct ggt gtt gcc gca act gaa tca 432Gly Cys Gly Ser Cys Trp
Ala Phe Ser Gly Val Ala Ala Thr Glu Ser 130 135 140 gct tat ttg gcc
tac cgt aac acg tct ttg gat ctt tct gaa cag gaa 480Ala Tyr Leu Ala
Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu145 150 155 160ctc
gtc gat tgc gca tct caa cac gga tgt cac ggc gat aca ata cca 528Leu
Val Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro 165 170
175 aga ggc atc gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc
576Arg Gly Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser
180 185 190 tat cca tac gtt gca cga gaa caa cga tgc cga cga cca aat
tcg caa 624Tyr Pro Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn
Ser Gln 195 200 205 cat tac ggt atc tca aac tac tgc caa att tat cca
cca gat gtg aaa 672His Tyr Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro
Pro Asp Val Lys 210 215 220 caa atc cgt gaa gct ttg act caa aca cac
aca gct att gcc gtc att 720Gln Ile Arg Glu Ala Leu Thr Gln Thr His
Thr Ala Ile Ala Val Ile225 230 235 240att ggc atc aaa gat ttg aga
gct ttc caa cat tat gat gga cga aca 768Ile Gly Ile Lys Asp Leu Arg
Ala Phe Gln His Tyr Asp Gly Arg Thr 245 250 255 atc att caa cat gac
aat ggt tat caa cca aac tat cat gcc gtc aac 816Ile Ile Gln His Asp
Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn 260 265 270 att gtc ggt
tac gga agt aca caa ggc gac gat tat tgg atc gta cga 864Ile Val Gly
Tyr Gly Ser Thr Gln Gly Asp Asp Tyr Trp Ile Val Arg 275 280 285 aac
agt tgg gat act acc tgg gga gat agc gga tac gga tat ttc caa 912Asn
Ser Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln 290 295
300 gcc gga aac aac ctc atg atg atc gaa caa tat cca tat gtt gta atc
960Ala Gly Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val
Ile305 310 315 320atg 963Met2321PRTDermatophagoides farinae 2Met
Lys Phe Val Leu Ala Ile Ala Ser Leu Leu Val Leu Ser Thr Val 1 5 10
15 Tyr Ala Arg Pro Ala Ser Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala
20 25 30 Phe Asn Lys Asn Tyr Ala Thr Val Glu Glu Glu Glu Val Ala
Arg Lys 35 40 45 Asn Phe Leu Glu Ser Leu Lys Tyr Val Glu Ala Asn
Lys Gly Ala Ile 50 55 60 Asn His Leu Ser Asp Leu Ser Leu Asp Glu
Phe Lys Asn Arg Tyr Leu 65 70 75 80 Met Ser Ala Glu Ala Phe Glu Gln
Leu Lys Thr Gln Phe Asp Leu Asn 85 90 95 Ala Glu Thr Ser Ala Cys
Arg Ile Asn Ser Val Asn Val Pro Ser Glu 100 105 110 Leu Asp Leu Arg
Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly 115 120 125 Gly Cys
Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser 130 135 140
Ala Tyr Leu Ala Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu 145
150 155 160 Leu Val Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr
Ile Pro 165 170 175 Arg Gly Ile Glu Tyr Ile Gln Gln Asn Gly Val Val
Glu Glu Arg Ser 180 185 190 Tyr Pro Tyr Val Ala Arg Glu Gln Arg Cys
Arg Arg Pro Asn Ser Gln 195 200 205 His Tyr Gly Ile Ser Asn Tyr Cys
Gln Ile Tyr Pro Pro Asp Val Lys 210 215 220 Gln Ile Arg Glu Ala Leu
Thr Gln Thr His Thr Ala Ile Ala Val Ile 225 230 235 240 Ile Gly Ile
Lys Asp Leu Arg Ala Phe Gln His Tyr Asp Gly Arg Thr 245 250 255 Ile
Ile Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn 260 265
270 Ile Val Gly Tyr Gly Ser Thr Gln Gly Asp Asp Tyr Trp Ile Val Arg
275 280 285 Asn Ser Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr
Phe Gln 290 295 300 Ala Gly Asn Asn Leu Met Met Ile Glu Gln Tyr Pro
Tyr Val Val Ile 305 310 315 320 Met 3963DNADermatophagoides farinae
3catgattaca acatatggat attgttcgat catcatgagg ttgtttccgg cttggaaata
60tccgtatccg ctatctcccc aggtagtatc ccaactgttt cgtacgatcc aataatcgtc
120gccttgtgta cttccgtaac cgacaatgtt gacggcatga tagtttggtt
gataaccatt 180gtcatgttga atgattgttc gtccatcata atgttggaaa
gctctcaaat ctttgatgcc 240aataatgacg gcaatagctg tgtgtgtttg
agtcaaagct tcacggattt gtttcacatc 300tggtggataa atttggcagt
agtttgagat accgtaatgt tgcgaatttg gtcgtcggca 360tcgttgttct
cgtgcaacgt atggatagct tctttcttca acgacaccat tttgttggat
420gtattcgatg cctcttggta ttgtatcgcc gtgacatccg tgttgagatg
cgcaatcgac 480gagttcctgt tcagaaagat ccaaagacgt gttacggtag
gccaaataag ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga
accacagcct ccttgcatac ggattggagt 600gacagttcgc agtgatcgta
aatccaattc cgatggaacg ttaaccgaat tgatacggca 660agcgcttgtt
tcggcattca aatcgaattg agttttgagt tgttcaaaag cttcagcact
720catcaaataa cggtttttga attcatccaa tgacaaatcg gacaaatggt
tgatggcacc 780tttgttagct tcaacatatt tcaatgattc caaaaagttt
ttacgggcaa cttcttcctc 840ttcaacggtg gcatagtttt tgttgaaggc
ttttttgaat tcttcaaaag ttttgattga 900agctggacga gcataaacag
tgctcaatac caacaaagag gcaatggcca aaacgaattt 960cat
9634909DNADermatophagoides farinaeCDS(1)..(909) 4cgt cca gct tca
atc aaa act ttt gaa gaa ttc aaa aaa gcc ttc aac 48Arg Pro Ala Ser
Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn1 5 10 15 aaa aac
tat gcc acc gtt gaa gag gaa gaa gtt gcc cgt aaa aac ttt 96Lys Asn
Tyr Ala Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30
ttg gaa tca ttg aaa tat gtt gaa gct aac aaa ggt gcc atc aac cat
144Leu Glu Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His
35 40 45 ttg tcc gat ttg tca ttg gat gaa ttc aaa aac cgt tat ttg
atg agt 192Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu
Met Ser 50 55 60 gct gaa gct ttt gaa caa ctc aaa act caa ttc gat
ttg aat gcc gaa 240Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp
Leu Asn Ala Glu65 70 75 80aca agc gct tgc cgt atc aat tcg gtt aac
gtt cca tcg gaa ttg gat 288Thr Ser Ala Cys Arg Ile Asn Ser Val Asn
Val Pro Ser Glu Leu Asp 85 90 95 tta cga tca ctg cga act gtc act
cca atc cgt atg caa gga ggc tgt 336Leu Arg Ser Leu Arg Thr Val Thr
Pro Ile Arg Met Gln Gly Gly Cys 100 105 110 ggt tca tgt tgg gct ttc
tct ggt gtt gcc gca act gaa tca gct tat 384Gly Ser Cys Trp Ala Phe
Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 115 120 125 ttg gcc tac cgt
aac acg tct ttg gat ctt tct gaa cag gaa ctc gtc 432Leu Ala Tyr Arg
Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 gat tgc
gca tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 480Asp Cys
Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly145 150 155
160atc gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca
528Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro
165 170 175 tac gtt gca cga gaa caa cga tgc cga cga cca aat tcg caa
cat tac 576Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln
His Tyr 180 185 190 ggt atc tca aac tac tgc caa att tat cca cca gat
gtg aaa caa atc 624Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp
Val Lys Gln Ile 195 200 205 cgt gaa gct ttg act caa aca cac aca gct
att gcc gtc att att ggc 672Arg Glu Ala Leu Thr Gln Thr His Thr Ala
Ile Ala Val Ile Ile Gly 210 215 220 atc aaa gat ttg aga gct ttc caa
cat tat gat gga cga aca atc att 720Ile Lys Asp Leu Arg Ala Phe Gln
His Tyr Asp Gly Arg Thr Ile Ile225 230 235 240caa cat gac aat ggt
tat caa cca aac tat cat gcc gtc aac att gtc 768Gln His Asp Asn Gly
Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255 ggt tac gga
agt aca caa ggc gac gat tat tgg atc gta cga aac agt 816Gly Tyr Gly
Ser Thr Gln Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 tgg
gat act acc tgg gga gat agc gga tac gga tat ttc caa gcc gga 864Trp
Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280
285 aac aac ctc atg atg atc gaa caa tat cca tat gtt gta atc atg
909Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290
295 300 5303PRTDermatophagoides farinae 5Arg Pro Ala Ser Ile Lys
Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn 1 5 10 15 Lys Asn Tyr Ala
Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 Leu Glu
Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His 35 40 45
Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu Met Ser 50
55 60 Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala
Glu 65 70 75 80 Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser
Glu Leu Asp 85 90 95 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg
Met Gln Gly Gly Cys 100 105 110 Gly Ser Cys Trp Ala Phe Ser Gly Val
Ala Ala Thr Glu Ser Ala Tyr 115 120 125 Leu Ala Tyr Arg Asn Thr Ser
Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 Asp Cys Ala Ser Gln
His Gly Cys His Gly Asp Thr Ile Pro Arg Gly 145 150 155 160 Ile Glu
Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 165 170 175
Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 180
185 190 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln
Ile 195 200 205 Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val
Ile Ile Gly 210 215 220 Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp
Gly Arg Thr Ile Ile 225 230 235 240 Gln His Asp Asn Gly Tyr Gln Pro
Asn Tyr His Ala Val Asn Ile Val 245 250 255 Gly Tyr Gly Ser Thr Gln
Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 Trp Asp Thr Thr
Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280 285 Asn Asn
Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290 295 300
6909DNADermatophagoides farinae 6catgattaca acatatggat attgttcgat
catcatgagg ttgtttccgg cttggaaata 60tccgtatccg ctatctcccc aggtagtatc
ccaactgttt cgtacgatcc aataatcgtc 120gccttgtgta cttccgtaac
cgacaatgtt gacggcatga tagtttggtt gataaccatt 180gtcatgttga
atgattgttc gtccatcata atgttggaaa gctctcaaat ctttgatgcc
240aataatgacg gcaatagctg tgtgtgtttg agtcaaagct tcacggattt
gtttcacatc 300tggtggataa atttggcagt agtttgagat accgtaatgt
tgcgaatttg gtcgtcggca 360tcgttgttct cgtgcaacgt atggatagct
tctttcttca acgacaccat tttgttggat 420gtattcgatg cctcttggta
ttgtatcgcc gtgacatccg tgttgagatg cgcaatcgac 480gagttcctgt
tcagaaagat ccaaagacgt gttacggtag gccaaataag ctgattcagt
540tgcggcaaca ccagagaaag cccaacatga accacagcct ccttgcatac
ggattggagt 600gacagttcgc agtgatcgta aatccaattc cgatggaacg
ttaaccgaat tgatacggca 660agcgcttgtt tcggcattca aatcgaattg
agttttgagt tgttcaaaag cttcagcact 720catcaaataa cggtttttga
attcatccaa tgacaaatcg gacaaatggt tgatggcacc 780tttgttagct
tcaacatatt tcaatgattc caaaaagttt ttacgggcaa cttcttcctc
840ttcaacggtg gcatagtttt tgttgaaggc ttttttgaat tcttcaaaag
ttttgattga 900agctggacg 9097669DNADermatophagoides
farinaeCDS(1)..(669) 7aca agc gct tgc cgt atc aat tcg gtt aac gtt
cca tcg gaa ttg gat 48Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val
Pro Ser Glu Leu Asp1 5 10 15 tta cga tca ctg cga act gtc act cca
atc cgt atg caa gga ggc tgt 96Leu Arg Ser Leu Arg Thr Val Thr Pro
Ile Arg Met Gln Gly Gly Cys 20 25 30 ggt tca tgt tgg gct ttc tct
ggt gtt gcc gca act gaa tca gct tat 144Gly Ser Cys Trp Ala Phe Ser
Gly Val Ala Ala Thr Glu Ser Ala Tyr 35 40 45 ttg gcc tac cgt aac
acg tct ttg gat ctt tct gaa cag gaa ctc gtc 192Leu Ala Tyr Arg Asn
Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 50 55 60 gat tgc gca
tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 240Asp Cys Ala
Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly65 70 75 80atc
gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca 288Ile
Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 85 90
95 tac gtt gca cga gaa caa cga tgc cga cga cca aat tcg caa cat tac
336Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr
100 105 110 ggt atc tca aac tac tgc caa att tat cca cca gat gtg aaa
caa atc 384Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys
Gln Ile 115 120 125 cgt gaa gct ttg act caa aca cac aca gct att gcc
gtc att att ggc 432Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala
Val Ile Ile Gly 130 135 140 atc aaa gat ttg aga gct ttc caa cat tat
gat gga cga aca atc att 480Ile Lys Asp Leu Arg Ala Phe Gln His Tyr
Asp Gly Arg Thr Ile Ile145 150 155 160caa cat gac aat ggt tat caa
cca aac tat cat gcc gtc aac att gtc 528Gln His Asp Asn Gly Tyr Gln
Pro Asn Tyr His Ala Val Asn Ile Val 165 170 175 ggt tac gga agt aca
caa ggc gac gat tat tgg atc gta cga aac agt 576Gly Tyr Gly Ser Thr
Gln Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 180 185 190 tgg gat act
acc tgg gga gat agc gga tac gga tat ttc caa gcc gga 624Trp Asp Thr
Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 195 200 205 aac
aac ctc atg atg atc gaa caa tat cca tat gtt gta atc atg 669Asn Asn
Leu Met Met Ile
Glu Gln Tyr Pro Tyr Val Val Ile Met 210 215 220
8223PRTDermatophagoides farinae 8Thr Ser Ala Cys Arg Ile Asn Ser
Val Asn Val Pro Ser Glu Leu Asp 1 5 10 15 Leu Arg Ser Leu Arg Thr
Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30 Gly Ser Cys Trp
Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 35 40 45 Leu Ala
Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 50 55 60
Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly 65
70 75 80 Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser
Tyr Pro 85 90 95 Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn
Ser Gln His Tyr 100 105 110 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro
Pro Asp Val Lys Gln Ile 115 120 125 Arg Glu Ala Leu Thr Gln Thr His
Thr Ala Ile Ala Val Ile Ile Gly 130 135 140 Ile Lys Asp Leu Arg Ala
Phe Gln His Tyr Asp Gly Arg Thr Ile Ile 145 150 155 160 Gln His Asp
Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 165 170 175 Gly
Tyr Gly Ser Thr Gln Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 180 185
190 Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly
195 200 205 Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile
Met 210 215 220 9669DNADermatophagoides farinae 9catgattaca
acatatggat attgttcgat catcatgagg ttgtttccgg cttggaaata 60tccgtatccg
ctatctcccc aggtagtatc ccaactgttt cgtacgatcc aataatcgtc
120gccttgtgta cttccgtaac cgacaatgtt gacggcatga tagtttggtt
gataaccatt 180gtcatgttga atgattgttc gtccatcata atgttggaaa
gctctcaaat ctttgatgcc 240aataatgacg gcaatagctg tgtgtgtttg
agtcaaagct tcacggattt gtttcacatc 300tggtggataa atttggcagt
agtttgagat accgtaatgt tgcgaatttg gtcgtcggca 360tcgttgttct
cgtgcaacgt atggatagct tctttcttca acgacaccat tttgttggat
420gtattcgatg cctcttggta ttgtatcgcc gtgacatccg tgttgagatg
cgcaatcgac 480gagttcctgt tcagaaagat ccaaagacgt gttacggtag
gccaaataag ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga
accacagcct ccttgcatac ggattggagt 600gacagttcgc agtgatcgta
aatccaattc cgatggaacg ttaaccgaat tgatacggca 660agcgcttgt
66910960DNADermatophagoides pteronyssinusCDS(1)..(960) 10atg aaa
att gtt ttg gcc atc gcc tca ttg ttg gca ttg agc gct gtt 48Met Lys
Ile Val Leu Ala Ile Ala Ser Leu Leu Ala Leu Ser Ala Val1 5 10 15
tat gct cgt cca tca tcg atc aaa act ttt gaa gaa tac aaa aaa gcc
96Tyr Ala Arg Pro Ser Ser Ile Lys Thr Phe Glu Glu Tyr Lys Lys Ala
20 25 30 ttc aac aaa agt tat gct acc ttc gaa gat gaa gaa gct gcc
cgt aaa 144Phe Asn Lys Ser Tyr Ala Thr Phe Glu Asp Glu Glu Ala Ala
Arg Lys 35 40 45 aac ttt ttg gaa tca gta aaa tat gtt caa tca aat
gga ggt gcc atc 192Asn Phe Leu Glu Ser Val Lys Tyr Val Gln Ser Asn
Gly Gly Ala Ile 50 55 60 aac cat ttg tcc gat ttg tcg ttg gat gaa
ttc aaa aac cga ttt ttg 240Asn His Leu Ser Asp Leu Ser Leu Asp Glu
Phe Lys Asn Arg Phe Leu65 70 75 80atg agt gca gaa gct ttt gaa cac
ctc aaa act caa ttc gat ttg aat 288Met Ser Ala Glu Ala Phe Glu His
Leu Lys Thr Gln Phe Asp Leu Asn 85 90 95 gct gaa act aac gcc tgc
agt atc aat gga aat gct cca gct gaa atc 336Ala Glu Thr Asn Ala Cys
Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile 100 105 110 gat ttg cga caa
atg cga act gtc act ccc att cgt atg caa gga ggc 384Asp Leu Arg Gln
Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly 115 120 125 tgt ggt
tca tgt tgg gct ttc tct ggt gtt gcc gca act gaa tca gct 432Cys Gly
Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala 130 135 140
tat ttg gct tac cgt aat caa tca ttg gat ctt gct gaa caa gaa tta
480Tyr Leu Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu
Leu145 150 155 160gtc gat tgt gct tcc caa cac ggt tgt cat ggt gat
acc att cca cgt 528Val Asp Cys Ala Ser Gln His Gly Cys His Gly Asp
Thr Ile Pro Arg 165 170 175 ggt att gaa tac atc caa cat aat ggt gtc
gtc caa gaa agc tac tat 576Gly Ile Glu Tyr Ile Gln His Asn Gly Val
Val Gln Glu Ser Tyr Tyr 180 185 190 cga tac gtt gca cga gaa caa tca
tgc cga cga cca aat gca caa cgt 624Arg Tyr Val Ala Arg Glu Gln Ser
Cys Arg Arg Pro Asn Ala Gln Arg 195 200 205 ttc ggt atc tca aac tat
tgc caa att tac cca cca aat gta aac aaa 672Phe Gly Ile Ser Asn Tyr
Cys Gln Ile Tyr Pro Pro Asn Val Asn Lys 210 215 220 att cgt gaa gct
ttg gct caa acc cac agc gct att gcc gtc att att 720Ile Arg Glu Ala
Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile225 230 235 240ggc
atc aaa gat tta gac gca ttc cgt cat tat gat ggc cga aca atc 768Gly
Ile Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile 245 250
255 att caa cgc gat aat ggt tac caa cca aac tat cac gct gtc aac att
816Ile Gln Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile
260 265 270 gtt ggt tac agt aac gca caa ggt gtc gat tat tgg atc gta
cga aac 864Val Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val
Arg Asn 275 280 285 agt tgg gat acc aat tgg ggt gat aat ggt tac ggt
tat ttt gct gcc 912Ser Trp Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly
Tyr Phe Ala Ala 290 295 300 aac atc gat ttg atg atg att gaa gaa tat
cca tat gtt gtc att ctc 960Asn Ile Asp Leu Met Met Ile Glu Glu Tyr
Pro Tyr Val Val Ile Leu305 310 315 32011320PRTDermatophagoides
pteronyssinus 11Met Lys Ile Val Leu Ala Ile Ala Ser Leu Leu Ala Leu
Ser Ala Val 1 5 10 15 Tyr Ala Arg Pro Ser Ser Ile Lys Thr Phe Glu
Glu Tyr Lys Lys Ala 20 25 30 Phe Asn Lys Ser Tyr Ala Thr Phe Glu
Asp Glu Glu Ala Ala Arg Lys 35 40 45 Asn Phe Leu Glu Ser Val Lys
Tyr Val Gln Ser Asn Gly Gly Ala Ile 50 55 60 Asn His Leu Ser Asp
Leu Ser Leu Asp Glu Phe Lys Asn Arg Phe Leu 65 70 75 80 Met Ser Ala
Glu Ala Phe Glu His Leu Lys Thr Gln Phe Asp Leu Asn 85 90 95 Ala
Glu Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile 100 105
110 Asp Leu Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly
115 120 125 Cys Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu
Ser Ala 130 135 140 Tyr Leu Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala
Glu Gln Glu Leu 145 150 155 160 Val Asp Cys Ala Ser Gln His Gly Cys
His Gly Asp Thr Ile Pro Arg 165 170 175 Gly Ile Glu Tyr Ile Gln His
Asn Gly Val Val Gln Glu Ser Tyr Tyr 180 185 190 Arg Tyr Val Ala Arg
Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg 195 200 205 Phe Gly Ile
Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Val Asn Lys 210 215 220 Ile
Arg Glu Ala Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile 225 230
235 240 Gly Ile Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr
Ile 245 250 255 Ile Gln Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala
Val Asn Ile 260 265 270 Val Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr
Trp Ile Val Arg Asn 275 280 285 Ser Trp Asp Thr Asn Trp Gly Asp Asn
Gly Tyr Gly Tyr Phe Ala Ala 290 295 300 Asn Ile Asp Leu Met Met Ile
Glu Glu Tyr Pro Tyr Val Val Ile Leu 305 310 315 320
12960DNADermatophagoides pteronyssinus 12gagaatgaca acatatggat
attcttcaat catcatcaaa tcgatgttgg cagcaaaata 60accgtaacca ttatcacccc
aattggtatc ccaactgttt cgtacgatcc aataatcgac 120accttgtgcg
ttactgtaac caacaatgtt gacagcgtga tagtttggtt ggtaaccatt
180atcgcgttga atgattgttc ggccatcata atgacggaat gcgtctaaat
ctttgatgcc 240aataatgacg gcaatagcgc tgtgggtttg agccaaagct
tcacgaattt tgtttacatt 300tggtgggtaa atttggcaat agtttgagat
accgaaacgt tgtgcatttg gtcgtcggca 360tgattgttct cgtgcaacgt
atcgatagta gctttcttgg acgacaccat tatgttggat 420gtattcaata
ccacgtggaa tggtatcacc atgacaaccg tgttgggaag cacaatcgac
480taattcttgt tcagcaagat ccaatgattg attacggtaa gccaaataag
ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga accacagcct
ccttgcatac gaatgggagt 600gacagttcgc atttgtcgca aatcgatttc
agctggagca tttccattga tactgcaggc 660gttagtttca gcattcaaat
cgaattgagt tttgaggtgt tcaaaagctt ctgcactcat 720caaaaatcgg
tttttgaatt catccaacga caaatcggac aaatggttga tggcacctcc
780atttgattga acatatttta ctgattccaa aaagttttta cgggcagctt
cttcatcttc 840gaaggtagca taacttttgt tgaaggcttt tttgtattct
tcaaaagttt tgatcgatga 900tggacgagca taaacagcgc tcaatgccaa
caatgaggcg atggccaaaa caattttcat 96013906DNADermatophagoides
pteronyssinusCDS(1)..(906) 13cgt cca tca tcg atc aaa act ttt gaa
gaa tac aaa aaa gcc ttc aac 48Arg Pro Ser Ser Ile Lys Thr Phe Glu
Glu Tyr Lys Lys Ala Phe Asn1 5 10 15 aaa agt tat gct acc ttc gaa
gat gaa gaa gct gcc cgt aaa aac ttt 96Lys Ser Tyr Ala Thr Phe Glu
Asp Glu Glu Ala Ala Arg Lys Asn Phe 20 25 30 ttg gaa tca gta aaa
tat gtt caa tca aat gga ggt gcc atc aac cat 144Leu Glu Ser Val Lys
Tyr Val Gln Ser Asn Gly Gly Ala Ile Asn His 35 40 45 ttg tcc gat
ttg tcg ttg gat gaa ttc aaa aac cga ttt ttg atg agt 192Leu Ser Asp
Leu Ser Leu Asp Glu Phe Lys Asn Arg Phe Leu Met Ser 50 55 60 gca
gaa gct ttt gaa cac ctc aaa act caa ttc gat ttg aat gct gaa 240Ala
Glu Ala Phe Glu His Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu65 70 75
80act aac gcc tgc agt atc aat gga aat gct cca gct gaa atc gat ttg
288Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp Leu
85 90 95 cga caa atg cga act gtc act ccc att cgt atg caa gga ggc
tgt ggt 336Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly
Cys Gly 100 105 110 tca tgt tgg gct ttc tct ggt gtt gcc gca act gaa
tca gct tat ttg 384Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu
Ser Ala Tyr Leu 115 120 125 gct tac cgt aat caa tca ttg gat ctt gct
gaa caa gaa tta gtc gat 432Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala
Glu Gln Glu Leu Val Asp 130 135 140 tgt gct tcc caa cac ggt tgt cat
ggt gat acc att cca cgt ggt att 480Cys Ala Ser Gln His Gly Cys His
Gly Asp Thr Ile Pro Arg Gly Ile145 150 155 160gaa tac atc caa cat
aat ggt gtc gtc caa gaa agc tac tat cga tac 528Glu Tyr Ile Gln His
Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg Tyr 165 170 175 gtt gca cga
gaa caa tca tgc cga cga cca aat gca caa cgt ttc ggt 576Val Ala Arg
Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg Phe Gly 180 185 190 atc
tca aac tat tgc caa att tac cca cca aat gta aac aaa att cgt 624Ile
Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Val Asn Lys Ile Arg 195 200
205 gaa gct ttg gct caa acc cac agc gct att gcc gtc att att ggc atc
672Glu Ala Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly Ile
210 215 220 aaa gat tta gac gca ttc cgt cat tat gat ggc cga aca atc
att caa 720Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile
Ile Gln225 230 235 240cgc gat aat ggt tac caa cca aac tat cac gct
gtc aac att gtt ggt 768Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala
Val Asn Ile Val Gly 245 250 255 tac agt aac gca caa ggt gtc gat tat
tgg atc gta cga aac agt tgg 816Tyr Ser Asn Ala Gln Gly Val Asp Tyr
Trp Ile Val Arg Asn Ser Trp 260 265 270 gat acc aat tgg ggt gat aat
ggt tac ggt tat ttt gct gcc aac atc 864Asp Thr Asn Trp Gly Asp Asn
Gly Tyr Gly Tyr Phe Ala Ala Asn Ile 275 280 285 gat ttg atg atg att
gaa gaa tat cca tat gtt gtc att ctc 906Asp Leu Met Met Ile Glu Glu
Tyr Pro Tyr Val Val Ile Leu 290 295 300 14302PRTDermatophagoides
pteronyssinus 14Arg Pro Ser Ser Ile Lys Thr Phe Glu Glu Tyr Lys Lys
Ala Phe Asn 1 5 10 15 Lys Ser Tyr Ala Thr Phe Glu Asp Glu Glu Ala
Ala Arg Lys Asn Phe 20 25 30 Leu Glu Ser Val Lys Tyr Val Gln Ser
Asn Gly Gly Ala Ile Asn His 35 40 45 Leu Ser Asp Leu Ser Leu Asp
Glu Phe Lys Asn Arg Phe Leu Met Ser 50 55 60 Ala Glu Ala Phe Glu
His Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu 65 70 75 80 Thr Asn Ala
Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp Leu 85 90 95 Arg
Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys Gly 100 105
110 Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr Leu
115 120 125 Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu Leu
Val Asp 130 135 140 Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile
Pro Arg Gly Ile 145 150 155 160 Glu Tyr Ile Gln His Asn Gly Val Val
Gln Glu Ser Tyr Tyr Arg Tyr 165 170 175 Val Ala Arg Glu Gln Ser Cys
Arg Arg Pro Asn Ala Gln Arg Phe Gly 180 185 190 Ile Ser Asn Tyr Cys
Gln Ile Tyr Pro Pro Asn Val Asn Lys Ile Arg 195 200 205 Glu Ala Leu
Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly Ile 210 215 220 Lys
Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile Gln 225 230
235 240 Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val
Gly 245 250 255 Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg
Asn Ser Trp 260 265 270 Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr
Phe Ala Ala Asn Ile 275 280 285 Asp Leu Met Met Ile Glu Glu Tyr Pro
Tyr Val Val Ile Leu 290 295 300 15906DNADermatophagoides
pteronyssinus 15gagaatgaca acatatggat attcttcaat catcatcaaa
tcgatgttgg cagcaaaata 60accgtaacca ttatcacccc aattggtatc ccaactgttt
cgtacgatcc aataatcgac 120accttgtgcg ttactgtaac caacaatgtt
gacagcgtga tagtttggtt ggtaaccatt 180atcgcgttga atgattgttc
ggccatcata atgacggaat gcgtctaaat ctttgatgcc 240aataatgacg
gcaatagcgc tgtgggtttg agccaaagct tcacgaattt tgtttacatt
300tggtgggtaa atttggcaat agtttgagat accgaaacgt tgtgcatttg
gtcgtcggca 360tgattgttct cgtgcaacgt atcgatagta gctttcttgg
acgacaccat tatgttggat 420gtattcaata ccacgtggaa tggtatcacc
atgacaaccg tgttgggaag cacaatcgac 480taattcttgt tcagcaagat
ccaatgattg attacggtaa gccaaataag ctgattcagt 540tgcggcaaca
ccagagaaag cccaacatga accacagcct ccttgcatac gaatgggagt
600gacagttcgc atttgtcgca aatcgatttc agctggagca tttccattga
tactgcaggc 660gttagtttca gcattcaaat cgaattgagt tttgaggtgt
tcaaaagctt ctgcactcat 720caaaaatcgg tttttgaatt catccaacga
caaatcggac aaatggttga tggcacctcc 780atttgattga acatatttta
ctgattccaa aaagttttta cgggcagctt cttcatcttc 840gaaggtagca
taacttttgt tgaaggcttt tttgtattct tcaaaagttt tgatcgatga 900tggacg
90616669DNADermatophagoides
pteronyssinusCDS(1)..(669) 16gaa act aac gcc tgc agt atc aat gga
aat gct cca gct gaa atc gat 48Glu Thr Asn Ala Cys Ser Ile Asn Gly
Asn Ala Pro Ala Glu Ile Asp1 5 10 15 ttg cga caa atg cga act gtc
act ccc att cgt atg caa gga ggc tgt 96Leu Arg Gln Met Arg Thr Val
Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30 ggt tca tgt tgg gct
ttc tct ggt gtt gcc gca act gaa tca gct tat 144Gly Ser Cys Trp Ala
Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 35 40 45 ttg gct tac
cgt aat caa tca ttg gat ctt gct gaa caa gaa tta gtc 192Leu Ala Tyr
Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu Leu Val 50 55 60 gat
tgt gct tcc caa cac ggt tgt cat ggt gat acc att cca cgt ggt 240Asp
Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly65 70 75
80att gaa tac atc caa cat aat ggt gtc gtc caa gaa agc tac tat cga
288Ile Glu Tyr Ile Gln His Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg
85 90 95 tac gtt gca cga gaa caa tca tgc cga cga cca aat gca caa
cgt ttc 336Tyr Val Ala Arg Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln
Arg Phe 100 105 110 ggt atc tca aac tat tgc caa att tac cca cca aat
gta aac aaa att 384Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn
Val Asn Lys Ile 115 120 125 cgt gaa gct ttg gct caa acc cac agc gct
att gcc gtc att att ggc 432Arg Glu Ala Leu Ala Gln Thr His Ser Ala
Ile Ala Val Ile Ile Gly 130 135 140 atc aaa gat tta gac gca ttc cgt
cat tat gat ggc cga aca atc att 480Ile Lys Asp Leu Asp Ala Phe Arg
His Tyr Asp Gly Arg Thr Ile Ile145 150 155 160caa cgc gat aat ggt
tac caa cca aac tat cac gct gtc aac att gtt 528Gln Arg Asp Asn Gly
Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 165 170 175 ggt tac agt
aac gca caa ggt gtc gat tat tgg atc gta cga aac agt 576Gly Tyr Ser
Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 180 185 190 tgg
gat acc aat tgg ggt gat aat ggt tac ggt tat ttt gct gcc aac 624Trp
Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala Ala Asn 195 200
205 atc gat ttg atg atg att gaa gaa tat cca tat gtt gtc att ctc
669Ile Asp Leu Met Met Ile Glu Glu Tyr Pro Tyr Val Val Ile Leu 210
215 220 17223PRTDermatophagoides pteronyssinus 17Glu Thr Asn Ala
Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp 1 5 10 15 Leu Arg
Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30
Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 35
40 45 Leu Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu Leu
Val 50 55 60 Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile
Pro Arg Gly 65 70 75 80 Ile Glu Tyr Ile Gln His Asn Gly Val Val Gln
Glu Ser Tyr Tyr Arg 85 90 95 Tyr Val Ala Arg Glu Gln Ser Cys Arg
Arg Pro Asn Ala Gln Arg Phe 100 105 110 Gly Ile Ser Asn Tyr Cys Gln
Ile Tyr Pro Pro Asn Val Asn Lys Ile 115 120 125 Arg Glu Ala Leu Ala
Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly 130 135 140 Ile Lys Asp
Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile 145 150 155 160
Gln Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 165
170 175 Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg Asn
Ser 180 185 190 Trp Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr Phe
Ala Ala Asn 195 200 205 Ile Asp Leu Met Met Ile Glu Glu Tyr Pro Tyr
Val Val Ile Leu 210 215 220 18669DNADermatophagoides pteronyssinus
18gagaatgaca acatatggat attcttcaat catcatcaaa tcgatgttgg cagcaaaata
60accgtaacca ttatcacccc aattggtatc ccaactgttt cgtacgatcc aataatcgac
120accttgtgcg ttactgtaac caacaatgtt gacagcgtga tagtttggtt
ggtaaccatt 180atcgcgttga atgattgttc ggccatcata atgacggaat
gcgtctaaat ctttgatgcc 240aataatgacg gcaatagcgc tgtgggtttg
agccaaagct tcacgaattt tgtttacatt 300tggtgggtaa atttggcaat
agtttgagat accgaaacgt tgtgcatttg gtcgtcggca 360tgattgttct
cgtgcaacgt atcgatagta gctttcttgg acgacaccat tatgttggat
420gtattcaata ccacgtggaa tggtatcacc atgacaaccg tgttgggaag
cacaatcgac 480taattcttgt tcagcaagat ccaatgattg attacggtaa
gccaaataag ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga
accacagcct ccttgcatac gaatgggagt 600gacagttcgc atttgtcgca
aatcgatttc agctggagca tttccattga tactgcaggc 660gttagtttc
66919963DNAEuroglyphus mayneiCDS(1)..(963) 19atg aaa atc att ttg
gcc atc gcc tca ttg ttg gta ttg agc gct gtt 48Met Lys Ile Ile Leu
Ala Ile Ala Ser Leu Leu Val Leu Ser Ala Val1 5 10 15 tat gct cgt
cca gct tcg atc aaa act ttt gaa gaa ttc aaa aaa gcc 96Tyr Ala Arg
Pro Ala Ser Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala 20 25 30 ttc
aac aaa acc tat gct acc cct gaa aag gaa gaa gtt gcc cgt aaa 144Phe
Asn Lys Thr Tyr Ala Thr Pro Glu Lys Glu Glu Val Ala Arg Lys 35 40
45 aac ttt ttg gaa tca ttg aaa tat gtg gaa tca aac aaa ggt gcc atc
192Asn Phe Leu Glu Ser Leu Lys Tyr Val Glu Ser Asn Lys Gly Ala Ile
50 55 60 aac cat ttg tcc gat ttg tca ttg gat gaa ttc aaa aac caa
ttt ttg 240Asn His Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Gln
Phe Leu65 70 75 80atg aat gct aat gct ttt gaa caa ctc aaa act caa
ttc gat ttg aat 288Met Asn Ala Asn Ala Phe Glu Gln Leu Lys Thr Gln
Phe Asp Leu Asn 85 90 95 gct gaa act tat gct tgc agt att aac tca
gtg agt tta cca tcg gaa 336Ala Glu Thr Tyr Ala Cys Ser Ile Asn Ser
Val Ser Leu Pro Ser Glu 100 105 110 ctt gat tta cgt tca ctg cga act
gta act cca atc cgt atg caa gga 384Leu Asp Leu Arg Ser Leu Arg Thr
Val Thr Pro Ile Arg Met Gln Gly 115 120 125 ggc tgt ggt tca tgc tgg
gct ttc tct ggt gtt gcc tca act gag tca 432Gly Cys Gly Ser Cys Trp
Ala Phe Ser Gly Val Ala Ser Thr Glu Ser 130 135 140 gct tat ttg gcc
tac cgc aac atg tct ttg gat ctt gct gaa caa gaa 480Ala Tyr Leu Ala
Tyr Arg Asn Met Ser Leu Asp Leu Ala Glu Gln Glu145 150 155 160tta
gtc gat tgt gct tca caa aac ggt tgc cat ggt gat aca att cca 528Leu
Val Asp Cys Ala Ser Gln Asn Gly Cys His Gly Asp Thr Ile Pro 165 170
175 cgc gga att gaa tac atc caa caa aat ggt gtc gtc caa gaa cac tac
576Arg Gly Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Gln Glu His Tyr
180 185 190 tat cca tac gtt gca cga gaa caa tca tgc cat cga cca aat
gca caa 624Tyr Pro Tyr Val Ala Arg Glu Gln Ser Cys His Arg Pro Asn
Ala Gln 195 200 205 cgt tac ggt ctc aag aac tat tgc caa att tcg cca
cca gac tcg aac 672Arg Tyr Gly Leu Lys Asn Tyr Cys Gln Ile Ser Pro
Pro Asp Ser Asn 210 215 220 aaa atc cgt caa gct ttg act caa aca cat
aca gcc gtt gcc gtc att 720Lys Ile Arg Gln Ala Leu Thr Gln Thr His
Thr Ala Val Ala Val Ile225 230 235 240att ggc atc aaa gat ttg aac
gct ttc cga cat tat gat gga cga aca 768Ile Gly Ile Lys Asp Leu Asn
Ala Phe Arg His Tyr Asp Gly Arg Thr 245 250 255 atc atg caa cac gac
aat ggt tat caa cca aac tat cat gcc gtc aac 816Ile Met Gln His Asp
Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn 260 265 270 att gtt ggt
tac ggt aat aca caa ggt gtt gat tat tgg atc gta cga 864Ile Val Gly
Tyr Gly Asn Thr Gln Gly Val Asp Tyr Trp Ile Val Arg 275 280 285 aac
agt tgg gat acc act tgg ggt gat aat ggc tat ggt tat ttc gct 912Asn
Ser Trp Asp Thr Thr Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala 290 295
300 gcc aac atc aat ttg atg atg atc gaa caa tat cca tat gta gtc atg
960Ala Asn Ile Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val
Met305 310 315 320ctt 963Leu20321PRTEuroglyphus maynei 20Met Lys
Ile Ile Leu Ala Ile Ala Ser Leu Leu Val Leu Ser Ala Val 1 5 10 15
Tyr Ala Arg Pro Ala Ser Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala 20
25 30 Phe Asn Lys Thr Tyr Ala Thr Pro Glu Lys Glu Glu Val Ala Arg
Lys 35 40 45 Asn Phe Leu Glu Ser Leu Lys Tyr Val Glu Ser Asn Lys
Gly Ala Ile 50 55 60 Asn His Leu Ser Asp Leu Ser Leu Asp Glu Phe
Lys Asn Gln Phe Leu 65 70 75 80 Met Asn Ala Asn Ala Phe Glu Gln Leu
Lys Thr Gln Phe Asp Leu Asn 85 90 95 Ala Glu Thr Tyr Ala Cys Ser
Ile Asn Ser Val Ser Leu Pro Ser Glu 100 105 110 Leu Asp Leu Arg Ser
Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly 115 120 125 Gly Cys Gly
Ser Cys Trp Ala Phe Ser Gly Val Ala Ser Thr Glu Ser 130 135 140 Ala
Tyr Leu Ala Tyr Arg Asn Met Ser Leu Asp Leu Ala Glu Gln Glu 145 150
155 160 Leu Val Asp Cys Ala Ser Gln Asn Gly Cys His Gly Asp Thr Ile
Pro 165 170 175 Arg Gly Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Gln
Glu His Tyr 180 185 190 Tyr Pro Tyr Val Ala Arg Glu Gln Ser Cys His
Arg Pro Asn Ala Gln 195 200 205 Arg Tyr Gly Leu Lys Asn Tyr Cys Gln
Ile Ser Pro Pro Asp Ser Asn 210 215 220 Lys Ile Arg Gln Ala Leu Thr
Gln Thr His Thr Ala Val Ala Val Ile 225 230 235 240 Ile Gly Ile Lys
Asp Leu Asn Ala Phe Arg His Tyr Asp Gly Arg Thr 245 250 255 Ile Met
Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn 260 265 270
Ile Val Gly Tyr Gly Asn Thr Gln Gly Val Asp Tyr Trp Ile Val Arg 275
280 285 Asn Ser Trp Asp Thr Thr Trp Gly Asp Asn Gly Tyr Gly Tyr Phe
Ala 290 295 300 Ala Asn Ile Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr
Val Val Met 305 310 315 320 Leu 21963DNAEuroglyphus maynei
21aagcatgact acatatggat attgttcgat catcatcaaa ttgatgttgg cagcgaaata
60accatagcca ttatcacccc aagtggtatc ccaactgttt cgtacgatcc aataatcaac
120accttgtgta ttaccgtaac caacaatgtt gacggcatga tagtttggtt
gataaccatt 180gtcgtgttgc atgattgttc gtccatcata atgtcggaaa
gcgttcaaat ctttgatgcc 240aataatgacg gcaacggctg tatgtgtttg
agtcaaagct tgacggattt tgttcgagtc 300tggtggcgaa atttggcaat
agttcttgag accgtaacgt tgtgcatttg gtcgatggca 360tgattgttct
cgtgcaacgt atggatagta gtgttcttgg acgacaccat tttgttggat
420gtattcaatt ccgcgtggaa ttgtatcacc atggcaaccg ttttgtgaag
cacaatcgac 480taattcttgt tcagcaagat ccaaagacat gttgcggtag
gccaaataag ctgactcagt 540tgaggcaaca ccagagaaag cccagcatga
accacagcct ccttgcatac ggattggagt 600tacagttcgc agtgaacgta
aatcaagttc cgatggtaaa ctcactgagt taatactgca 660agcataagtt
tcagcattca aatcgaattg agttttgagt tgttcaaaag cattagcatt
720catcaaaaat tggtttttga attcatccaa tgacaaatcg gacaaatggt
tgatggcacc 780tttgtttgat tccacatatt tcaatgattc caaaaagttt
ttacgggcaa cttcttcctt 840ttcaggggta gcataggttt tgttgaaggc
ttttttgaat tcttcaaaag ttttgatcga 900agctggacga gcataaacag
cgctcaatac caacaatgag gcgatggcca aaatgatttt 960cat 963
22909DNAEuroglyphus mayneiCDS(1)..(909) 22cgt cca gct tcg atc aaa
act ttt gaa gaa ttc aaa aaa gcc ttc aac 48Arg Pro Ala Ser Ile Lys
Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn1 5 10 15 aaa acc tat gct
acc cct gaa aag gaa gaa gtt gcc cgt aaa aac ttt 96Lys Thr Tyr Ala
Thr Pro Glu Lys Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 ttg gaa
tca ttg aaa tat gtg gaa tca aac aaa ggt gcc atc aac cat 144Leu Glu
Ser Leu Lys Tyr Val Glu Ser Asn Lys Gly Ala Ile Asn His 35 40 45
ttg tcc gat ttg tca ttg gat gaa ttc aaa aac caa ttt ttg atg aat
192Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Gln Phe Leu Met Asn
50 55 60 gct aat gct ttt gaa caa ctc aaa act caa ttc gat ttg aat
gct gaa 240Ala Asn Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn
Ala Glu65 70 75 80act tat gct tgc agt att aac tca gtg agt tta cca
tcg gaa ctt gat 288Thr Tyr Ala Cys Ser Ile Asn Ser Val Ser Leu Pro
Ser Glu Leu Asp 85 90 95 tta cgt tca ctg cga act gta act cca atc
cgt atg caa gga ggc tgt 336Leu Arg Ser Leu Arg Thr Val Thr Pro Ile
Arg Met Gln Gly Gly Cys 100 105 110 ggt tca tgc tgg gct ttc tct ggt
gtt gcc tca act gag tca gct tat 384Gly Ser Cys Trp Ala Phe Ser Gly
Val Ala Ser Thr Glu Ser Ala Tyr 115 120 125 ttg gcc tac cgc aac atg
tct ttg gat ctt gct gaa caa gaa tta gtc 432Leu Ala Tyr Arg Asn Met
Ser Leu Asp Leu Ala Glu Gln Glu Leu Val 130 135 140 gat tgt gct tca
caa aac ggt tgc cat ggt gat aca att cca cgc gga 480Asp Cys Ala Ser
Gln Asn Gly Cys His Gly Asp Thr Ile Pro Arg Gly145 150 155 160att
gaa tac atc caa caa aat ggt gtc gtc caa gaa cac tac tat cca 528Ile
Glu Tyr Ile Gln Gln Asn Gly Val Val Gln Glu His Tyr Tyr Pro 165 170
175 tac gtt gca cga gaa caa tca tgc cat cga cca aat gca caa cgt tac
576Tyr Val Ala Arg Glu Gln Ser Cys His Arg Pro Asn Ala Gln Arg Tyr
180 185 190 ggt ctc aag aac tat tgc caa att tcg cca cca gac tcg aac
aaa atc 624Gly Leu Lys Asn Tyr Cys Gln Ile Ser Pro Pro Asp Ser Asn
Lys Ile 195 200 205 cgt caa gct ttg act caa aca cat aca gcc gtt gcc
gtc att att ggc 672Arg Gln Ala Leu Thr Gln Thr His Thr Ala Val Ala
Val Ile Ile Gly 210 215 220 atc aaa gat ttg aac gct ttc cga cat tat
gat gga cga aca atc atg 720Ile Lys Asp Leu Asn Ala Phe Arg His Tyr
Asp Gly Arg Thr Ile Met225 230 235 240caa cac gac aat ggt tat caa
cca aac tat cat gcc gtc aac att gtt 768Gln His Asp Asn Gly Tyr Gln
Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255 ggt tac ggt aat aca
caa ggt gtt gat tat tgg atc gta cga aac agt 816Gly Tyr Gly Asn Thr
Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 tgg gat acc
act tgg ggt gat aat ggc tat ggt tat ttc gct gcc aac 864Trp Asp Thr
Thr Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala Ala Asn 275 280 285 atc
aat ttg atg atg atc gaa caa tat cca tat gta gtc atg ctt 909Ile Asn
Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Met Leu 290 295 300
23303PRTEuroglyphus maynei 23Arg Pro Ala Ser Ile Lys Thr Phe Glu
Glu Phe Lys Lys Ala Phe Asn 1 5 10 15 Lys Thr Tyr Ala Thr Pro Glu
Lys Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 Leu Glu Ser Leu Lys
Tyr Val Glu Ser Asn Lys Gly Ala Ile Asn His 35 40 45 Leu Ser Asp
Leu Ser Leu Asp Glu Phe Lys Asn Gln Phe Leu Met Asn 50 55 60 Ala
Asn Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu 65 70
75 80 Thr Tyr Ala Cys Ser Ile Asn Ser Val Ser Leu Pro Ser Glu Leu
Asp 85 90 95 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln
Gly Gly Cys
100 105 110 Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ser Thr Glu Ser
Ala Tyr 115 120 125 Leu Ala Tyr Arg Asn Met Ser Leu Asp Leu Ala Glu
Gln Glu Leu Val 130 135 140 Asp Cys Ala Ser Gln Asn Gly Cys His Gly
Asp Thr Ile Pro Arg Gly 145 150 155 160 Ile Glu Tyr Ile Gln Gln Asn
Gly Val Val Gln Glu His Tyr Tyr Pro 165 170 175 Tyr Val Ala Arg Glu
Gln Ser Cys His Arg Pro Asn Ala Gln Arg Tyr 180 185 190 Gly Leu Lys
Asn Tyr Cys Gln Ile Ser Pro Pro Asp Ser Asn Lys Ile 195 200 205 Arg
Gln Ala Leu Thr Gln Thr His Thr Ala Val Ala Val Ile Ile Gly 210 215
220 Ile Lys Asp Leu Asn Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Met
225 230 235 240 Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val
Asn Ile Val 245 250 255 Gly Tyr Gly Asn Thr Gln Gly Val Asp Tyr Trp
Ile Val Arg Asn Ser 260 265 270 Trp Asp Thr Thr Trp Gly Asp Asn Gly
Tyr Gly Tyr Phe Ala Ala Asn 275 280 285 Ile Asn Leu Met Met Ile Glu
Gln Tyr Pro Tyr Val Val Met Leu 290 295 300 24909DNAEuroglyphus
maynei 24aagcatgact acatatggat attgttcgat catcatcaaa ttgatgttgg
cagcgaaata 60accatagcca ttatcacccc aagtggtatc ccaactgttt cgtacgatcc
aataatcaac 120accttgtgta ttaccgtaac caacaatgtt gacggcatga
tagtttggtt gataaccatt 180gtcgtgttgc atgattgttc gtccatcata
atgtcggaaa gcgttcaaat ctttgatgcc 240aataatgacg gcaacggctg
tatgtgtttg agtcaaagct tgacggattt tgttcgagtc 300tggtggcgaa
atttggcaat agttcttgag accgtaacgt tgtgcatttg gtcgatggca
360tgattgttct cgtgcaacgt atggatagta gtgttcttgg acgacaccat
tttgttggat 420gtattcaatt ccgcgtggaa ttgtatcacc atggcaaccg
ttttgtgaag cacaatcgac 480taattcttgt tcagcaagat ccaaagacat
gttgcggtag gccaaataag ctgactcagt 540tgaggcaaca ccagagaaag
cccagcatga accacagcct ccttgcatac ggattggagt 600tacagttcgc
agtgaacgta aatcaagttc cgatggtaaa ctcactgagt taatactgca
660agcataagtt tcagcattca aatcgaattg agttttgagt tgttcaaaag
cattagcatt 720catcaaaaat tggtttttga attcatccaa tgacaaatcg
gacaaatggt tgatggcacc 780tttgtttgat tccacatatt tcaatgattc
caaaaagttt ttacgggcaa cttcttcctt 840ttcaggggta gcataggttt
tgttgaaggc ttttttgaat tcttcaaaag ttttgatcga 900agctggacg
90925669DNAEuroglyphus mayneiCDS(1)..(669) 25act tat gct tgc agt
att aac tca gtg agt tta cca tcg gaa ctt gat 48Thr Tyr Ala Cys Ser
Ile Asn Ser Val Ser Leu Pro Ser Glu Leu Asp1 5 10 15 tta cgt tca
ctg cga act gta act cca atc cgt atg caa gga ggc tgt 96Leu Arg Ser
Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30 ggt
tca tgc tgg gct ttc tct ggt gtt gcc tca act gag tca gct tat 144Gly
Ser Cys Trp Ala Phe Ser Gly Val Ala Ser Thr Glu Ser Ala Tyr 35 40
45 ttg gcc tac cgc aac atg tct ttg gat ctt gct gaa caa gaa tta gtc
192Leu Ala Tyr Arg Asn Met Ser Leu Asp Leu Ala Glu Gln Glu Leu Val
50 55 60 gat tgt gct tca caa aac ggt tgc cat ggt gat aca att cca
cgc gga 240Asp Cys Ala Ser Gln Asn Gly Cys His Gly Asp Thr Ile Pro
Arg Gly65 70 75 80att gaa tac atc caa caa aat ggt gtc gtc caa gaa
cac tac tat cca 288Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Gln Glu
His Tyr Tyr Pro 85 90 95 tac gtt gca cga gaa caa tca tgc cat cga
cca aat gca caa cgt tac 336Tyr Val Ala Arg Glu Gln Ser Cys His Arg
Pro Asn Ala Gln Arg Tyr 100 105 110 ggt ctc aag aac tat tgc caa att
tcg cca cca gac tcg aac aaa atc 384Gly Leu Lys Asn Tyr Cys Gln Ile
Ser Pro Pro Asp Ser Asn Lys Ile 115 120 125 cgt caa gct ttg act caa
aca cat aca gcc gtt gcc gtc att att ggc 432Arg Gln Ala Leu Thr Gln
Thr His Thr Ala Val Ala Val Ile Ile Gly 130 135 140 atc aaa gat ttg
aac gct ttc cga cat tat gat gga cga aca atc atg 480Ile Lys Asp Leu
Asn Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Met145 150 155 160caa
cac gac aat ggt tat caa cca aac tat cat gcc gtc aac att gtt 528Gln
His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 165 170
175 ggt tac ggt aat aca caa ggt gtt gat tat tgg atc gta cga aac agt
576Gly Tyr Gly Asn Thr Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser
180 185 190 tgg gat acc act tgg ggt gat aat ggc tat ggt tat ttc gct
gcc aac 624Trp Asp Thr Thr Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala
Ala Asn 195 200 205 atc aat ttg atg atg atc gaa caa tat cca tat gta
gtc atg ctt 669Ile Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val
Met Leu 210 215 220 26223PRTEuroglyphus maynei 26Thr Tyr Ala Cys
Ser Ile Asn Ser Val Ser Leu Pro Ser Glu Leu Asp 1 5 10 15 Leu Arg
Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30
Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ser Thr Glu Ser Ala Tyr 35
40 45 Leu Ala Tyr Arg Asn Met Ser Leu Asp Leu Ala Glu Gln Glu Leu
Val 50 55 60 Asp Cys Ala Ser Gln Asn Gly Cys His Gly Asp Thr Ile
Pro Arg Gly 65 70 75 80 Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Gln
Glu His Tyr Tyr Pro 85 90 95 Tyr Val Ala Arg Glu Gln Ser Cys His
Arg Pro Asn Ala Gln Arg Tyr 100 105 110 Gly Leu Lys Asn Tyr Cys Gln
Ile Ser Pro Pro Asp Ser Asn Lys Ile 115 120 125 Arg Gln Ala Leu Thr
Gln Thr His Thr Ala Val Ala Val Ile Ile Gly 130 135 140 Ile Lys Asp
Leu Asn Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Met 145 150 155 160
Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 165
170 175 Gly Tyr Gly Asn Thr Gln Gly Val Asp Tyr Trp Ile Val Arg Asn
Ser 180 185 190 Trp Asp Thr Thr Trp Gly Asp Asn Gly Tyr Gly Tyr Phe
Ala Ala Asn 195 200 205 Ile Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr
Val Val Met Leu 210 215 220 27669DNAEuroglyphus maynei 27aagcatgact
acatatggat attgttcgat catcatcaaa ttgatgttgg cagcgaaata 60accatagcca
ttatcacccc aagtggtatc ccaactgttt cgtacgatcc aataatcaac
120accttgtgta ttaccgtaac caacaatgtt gacggcatga tagtttggtt
gataaccatt 180gtcgtgttgc atgattgttc gtccatcata atgtcggaaa
gcgttcaaat ctttgatgcc 240aataatgacg gcaacggctg tatgtgtttg
agtcaaagct tgacggattt tgttcgagtc 300tggtggcgaa atttggcaat
agttcttgag accgtaacgt tgtgcatttg gtcgatggca 360tgattgttct
cgtgcaacgt atggatagta gtgttcttgg acgacaccat tttgttggat
420gtattcaatt ccgcgtggaa ttgtatcacc atggcaaccg ttttgtgaag
cacaatcgac 480taattcttgt tcagcaagat ccaaagacat gttgcggtag
gccaaataag ctgactcagt 540tgaggcaaca ccagagaaag cccagcatga
accacagcct ccttgcatac ggattggagt 600tacagttcgc agtgaacgta
aatcaagttc cgatggtaaa ctcactgagt taatactgca 660agcataagt
66928909DNADermatophagoides farinaeCDS(1)..(909) 28aga cca gct tca
atc aaa act ttt gaa gaa ttc aaa aaa gcc ttc aac 48Arg Pro Ala Ser
Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn1 5 10 15 aaa aac
tat gcc acc gtt gaa gag gaa gaa gtt gcc cgt aaa aac ttt 96Lys Asn
Tyr Ala Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30
ttg gaa tca ttg aaa tat gtt gaa gct aac aaa ggt gcc atc aac cat
144Leu Glu Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His
35 40 45 ttg tcc gat ttg tca ttg gat gaa ttc aaa aac cgt tat ttg
atg agt 192Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu
Met Ser 50 55 60 gct gaa gct ttt gaa caa ctc aaa act caa ttc gat
ttg aat gcc gaa 240Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp
Leu Asn Ala Glu65 70 75 80aca agc gct tgc cgt atc aat tcg gtt aac
gtt cca tcg gaa ttg gat 288Thr Ser Ala Cys Arg Ile Asn Ser Val Asn
Val Pro Ser Glu Leu Asp 85 90 95 tta cga tca ctg cga act gtc act
cca atc cgt atg caa gga ggc tgt 336Leu Arg Ser Leu Arg Thr Val Thr
Pro Ile Arg Met Gln Gly Gly Cys 100 105 110 ggt tca tgt tgg gct ttc
tct ggt gtt gcc gca act gaa tca gct tat 384Gly Ser Cys Trp Ala Phe
Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 115 120 125 ttg gcc tac cgt
aac acg tct ttg gat ctt tct gaa cag gaa ctc gtc 432Leu Ala Tyr Arg
Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 gat tgc
gca tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 480Asp Cys
Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly145 150 155
160atc gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca
528Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro
165 170 175 tac gtt gca aga gaa caa aga tgc aga aga cca aat tcg caa
cat tac 576Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln
His Tyr 180 185 190 ggt atc tca aac tac tgc caa att tat cca cca gat
gtg aaa caa atc 624Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp
Val Lys Gln Ile 195 200 205 cgt gaa gct ttg act caa aca cac aca gct
att gcc gtc att att ggc 672Arg Glu Ala Leu Thr Gln Thr His Thr Ala
Ile Ala Val Ile Ile Gly 210 215 220 atc aaa gat ttg aga gct ttc caa
cat tat gat gga cga aca atc att 720Ile Lys Asp Leu Arg Ala Phe Gln
His Tyr Asp Gly Arg Thr Ile Ile225 230 235 240caa cat gac aat ggt
tat caa cca aac tat cat gcc gtc aac att gtc 768Gln His Asp Asn Gly
Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255 ggt tac gga
agt aca caa ggc gac gat tat tgg atc gta cga aac agt 816Gly Tyr Gly
Ser Thr Gln Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 tgg
gat act acc tgg gga gat agc gga tac gga tat ttc caa gcc gga 864Trp
Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280
285 aac aac ctc atg atg atc gaa caa tat cca tat gtt gta atc atg
909Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290
295 300 29303PRTDermatophagoides farinae 29Arg Pro Ala Ser Ile Lys
Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn 1 5 10 15 Lys Asn Tyr Ala
Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 Leu Glu
Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His 35 40 45
Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu Met Ser 50
55 60 Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala
Glu 65 70 75 80 Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser
Glu Leu Asp 85 90 95 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg
Met Gln Gly Gly Cys 100 105 110 Gly Ser Cys Trp Ala Phe Ser Gly Val
Ala Ala Thr Glu Ser Ala Tyr 115 120 125 Leu Ala Tyr Arg Asn Thr Ser
Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 Asp Cys Ala Ser Gln
His Gly Cys His Gly Asp Thr Ile Pro Arg Gly 145 150 155 160 Ile Glu
Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 165 170 175
Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 180
185 190 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln
Ile 195 200 205 Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val
Ile Ile Gly 210 215 220 Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp
Gly Arg Thr Ile Ile 225 230 235 240 Gln His Asp Asn Gly Tyr Gln Pro
Asn Tyr His Ala Val Asn Ile Val 245 250 255 Gly Tyr Gly Ser Thr Gln
Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 Trp Asp Thr Thr
Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280 285 Asn Asn
Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290 295 300
30909DNADermatophagoides farinae 30catgattaca acatatggat attgttcgat
catcatgagg ttgtttccgg cttggaaata 60tccgtatccg ctatctcccc aggtagtatc
ccaactgttt cgtacgatcc aataatcgtc 120gccttgtgta cttccgtaac
cgacaatgtt gacggcatga tagtttggtt gataaccatt 180gtcatgttga
atgattgttc gtccatcata atgttggaaa gctctcaaat ctttgatgcc
240aataatgacg gcaatagctg tgtgtgtttg agtcaaagct tcacggattt
gtttcacatc 300tggtggataa atttggcagt agtttgagat accgtaatgt
tgcgaatttg gtcttctgca 360tctttgttct cttgcaacgt atggatagct
tctttcttca acgacaccat tttgttggat 420gtattcgatg cctcttggta
ttgtatcgcc gtgacatccg tgttgagatg cgcaatcgac 480gagttcctgt
tcagaaagat ccaaagacgt gttacggtag gccaaataag ctgattcagt
540tgcggcaaca ccagagaaag cccaacatga accacagcct ccttgcatac
ggattggagt 600gacagttcgc agtgatcgta aatccaattc cgatggaacg
ttaaccgaat tgatacggca 660agcgcttgtt tcggcattca aatcgaattg
agttttgagt tgttcaaaag cttcagcact 720catcaaataa cggtttttga
attcatccaa tgacaaatcg gacaaatggt tgatggcacc 780tttgttagct
tcaacatatt tcaatgattc caaaaagttt ttacgggcaa cttcttcctc
840ttcaacggtg gcatagtttt tgttgaaggc ttttttgaat tcttcaaaag
ttttgattga 900agctggtct 90931669DNADermatophagoides
farinaeCDS(1)..(669) 31aca agc gct tgc cgt atc aat tcg gtt aac gtt
cca tcg gaa ttg gat 48Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val
Pro Ser Glu Leu Asp1 5 10 15 tta cga tca ctg cga act gtc act cca
atc cgt atg caa gga ggc tgt 96Leu Arg Ser Leu Arg Thr Val Thr Pro
Ile Arg Met Gln Gly Gly Cys 20 25 30 ggt tca tgt tgg gct ttc tct
ggt gtc gcc gca act gaa tca gct tat 144Gly Ser Cys Trp Ala Phe Ser
Gly Val Ala Ala Thr Glu Ser Ala Tyr 35 40 45 ttg gcc tac cgt aac
acg tct ttg gat ctt tct gaa cag gaa ctc gtc 192Leu Ala Tyr Arg Asn
Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 50 55 60 gat tgc gca
tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 240Asp Cys Ala
Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly65 70 75 80atc
gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca 288Ile
Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 85 90
95 tac gtt gca aga gaa caa aga tgc aga aga cca aat tcg caa cat tac
336Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr
100 105 110 ggt atc tca aac tac tgc caa att tat cca cca gat gtg aaa
caa atc 384Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys
Gln Ile 115 120 125 cgt gaa gct ttg act caa aca cac aca gct att gcc
gtc att att ggc 432Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala
Val Ile Ile Gly 130 135 140 att aaa gat ttg aga gct ttt caa cat tat
gat gga cga aca atc att 480Ile Lys Asp Leu Arg Ala Phe Gln His Tyr
Asp Gly Arg Thr Ile Ile145 150 155 160caa cat gac aat ggt tat caa
cca aac tat cat gcc gtc aac att gtc 528Gln His Asp Asn Gly Tyr Gln
Pro Asn Tyr His Ala Val Asn Ile Val 165 170 175 ggt tac gga agt aca
caa ggc gtc gat tat tgg atc gta cga aac agt 576Gly Tyr Gly Ser Thr
Gln Gly Val Asp Tyr Trp Ile Val Arg
Asn Ser 180 185 190 tgg gat act acc tgg ggt gat agc gga tac gga tat
ttc caa gcc gga 624Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr
Phe Gln Ala Gly 195 200 205 aac aac ctc atg atg atc gaa caa tat cca
tat gtt gta atc atg 669Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr
Val Val Ile Met 210 215 220 32223PRTDermatophagoides farinae 32Thr
Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser Glu Leu Asp 1 5 10
15 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys
20 25 30 Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser
Ala Tyr 35 40 45 Leu Ala Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu
Gln Glu Leu Val 50 55 60 Asp Cys Ala Ser Gln His Gly Cys His Gly
Asp Thr Ile Pro Arg Gly 65 70 75 80 Ile Glu Tyr Ile Gln Gln Asn Gly
Val Val Glu Glu Arg Ser Tyr Pro 85 90 95 Tyr Val Ala Arg Glu Gln
Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 100 105 110 Gly Ile Ser Asn
Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln Ile 115 120 125 Arg Glu
Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val Ile Ile Gly 130 135 140
Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp Gly Arg Thr Ile Ile 145
150 155 160 Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn
Ile Val 165 170 175 Gly Tyr Gly Ser Thr Gln Gly Val Asp Tyr Trp Ile
Val Arg Asn Ser 180 185 190 Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr
Gly Tyr Phe Gln Ala Gly 195 200 205 Asn Asn Leu Met Met Ile Glu Gln
Tyr Pro Tyr Val Val Ile Met 210 215 220 33669DNADermatophagoides
farinae 33catgattaca acatatggat attgttcgat catcatgagg ttgtttccgg
cttggaaata 60tccgtatccg ctatcacccc aggtagtatc ccaactgttt cgtacgatcc
aataatcgac 120gccttgtgta cttccgtaac cgacaatgtt gacggcatga
tagtttggtt gataaccatt 180gtcatgttga atgattgttc gtccatcata
atgttgaaaa gctctcaaat ctttaatgcc 240aataatgacg gcaatagctg
tgtgtgtttg agtcaaagct tcacggattt gtttcacatc 300tggtggataa
atttggcagt agtttgagat accgtaatgt tgcgaatttg gtcttctgca
360tctttgttct cttgcaacgt atggatagct tctttcttca acgacaccat
tttgttggat 420gtattcgatg cctcttggta ttgtatcgcc gtgacatccg
tgttgagatg cgcaatcgac 480gagttcctgt tcagaaagat ccaaagacgt
gttacggtag gccaaataag ctgattcagt 540tgcggcgaca ccagagaaag
cccaacatga accacagcct ccttgcatac ggattggagt 600gacagttcgc
agtgatcgta aatccaattc cgatggaacg ttaaccgaat tgatacggca 660agcgcttgt
66934909DNADermatophagoides farinaeCDS(1)..(909) 34cgt ccg gct tca
atc aaa act ttt gaa gaa ttc aaa aaa gcc ttc aac 48Arg Pro Ala Ser
Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn1 5 10 15 aaa aac
tat gcc acc gtt gaa gag gaa gaa gtt gcc cgt aaa aac ttt 96Lys Asn
Tyr Ala Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30
ttg gaa tca ttg aaa tat gtt gaa gct aac aaa ggt gcc atc aac cat
144Leu Glu Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His
35 40 45 ttg tcc gat ttg tca ttg gat gaa ttc aaa aac cgt tat ttg
atg agt 192Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu
Met Ser 50 55 60 gct gaa gct ttt gaa caa ctc aaa act caa ttc gat
ttg aat gcc gaa 240Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp
Leu Asn Ala Glu65 70 75 80aca agc gct tgt cgt atc aat tcg gtt aac
gtt cca tcg gaa ttg gat 288Thr Ser Ala Cys Arg Ile Asn Ser Val Asn
Val Pro Ser Glu Leu Asp 85 90 95 tta cga tca ctg cga act gtc act
cca atc cgt atg caa gga ggc tgt 336Leu Arg Ser Leu Arg Thr Val Thr
Pro Ile Arg Met Gln Gly Gly Cys 100 105 110 ggt tca tgt tgg gct ttc
tct ggt gtc gcc gca act gaa tca gct tat 384Gly Ser Cys Trp Ala Phe
Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 115 120 125 ttg gcc tac cgt
aac acg tct ttg gat ctt tct gaa cag gaa ctc gtc 432Leu Ala Tyr Arg
Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 gat tgc
gca tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 480Asp Cys
Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly145 150 155
160atc gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca
528Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro
165 170 175 tac gtt gca cgt gaa caa cgt tgc cgt cgt cca aat tcg caa
cat tac 576Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln
His Tyr 180 185 190 ggt atc tca aac tac tgc caa att tat cca cca gat
gtg aaa caa atc 624Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp
Val Lys Gln Ile 195 200 205 cgt gaa gct ttg act caa aca cac aca gct
att gcc gtc att att ggc 672Arg Glu Ala Leu Thr Gln Thr His Thr Ala
Ile Ala Val Ile Ile Gly 210 215 220 att aaa gat ttg aga gct ttt caa
cat tat gat gga cga aca atc att 720Ile Lys Asp Leu Arg Ala Phe Gln
His Tyr Asp Gly Arg Thr Ile Ile225 230 235 240caa cat gac aat ggt
tat caa cca aac tat cat gcc gtc aac att gtc 768Gln His Asp Asn Gly
Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255 ggt tac gga
agt aca caa ggc gtc gat tat tgg atc gtg cga aac agt 816Gly Tyr Gly
Ser Thr Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 tgg
gat act acc tgg ggt gat agc gga tac gga tat ttc caa gcc gga 864Trp
Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280
285 aac aac ctc atg atg atc gaa caa tat cca tac gtt gta atc atg
909Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290
295 300 35303PRTDermatophagoides farinae 35Arg Pro Ala Ser Ile Lys
Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn 1 5 10 15 Lys Asn Tyr Ala
Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 Leu Glu
Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His 35 40 45
Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu Met Ser 50
55 60 Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala
Glu 65 70 75 80 Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser
Glu Leu Asp 85 90 95 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg
Met Gln Gly Gly Cys 100 105 110 Gly Ser Cys Trp Ala Phe Ser Gly Val
Ala Ala Thr Glu Ser Ala Tyr 115 120 125 Leu Ala Tyr Arg Asn Thr Ser
Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 Asp Cys Ala Ser Gln
His Gly Cys His Gly Asp Thr Ile Pro Arg Gly 145 150 155 160 Ile Glu
Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 165 170 175
Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 180
185 190 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln
Ile 195 200 205 Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val
Ile Ile Gly 210 215 220 Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp
Gly Arg Thr Ile Ile 225 230 235 240 Gln His Asp Asn Gly Tyr Gln Pro
Asn Tyr His Ala Val Asn Ile Val 245 250 255 Gly Tyr Gly Ser Thr Gln
Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 Trp Asp Thr Thr
Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280 285 Asn Asn
Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290 295 300
36909DNADermatophagoides farinae 36catgattaca acgtatggat attgttcgat
catcatgagg ttgtttccgg cttggaaata 60tccgtatccg ctatcacccc aggtagtatc
ccaactgttt cgcacgatcc aataatcgac 120gccttgtgta cttccgtaac
cgacaatgtt gacggcatga tagtttggtt gataaccatt 180gtcatgttga
atgattgttc gtccatcata atgttgaaaa gctctcaaat ctttaatgcc
240aataatgacg gcaatagctg tgtgtgtttg agtcaaagct tcacggattt
gtttcacatc 300tggtggataa atttggcagt agtttgagat accgtaatgt
tgcgaatttg gacgacggca 360acgttgttca cgtgcaacgt atggatagct
tctttcttca acgacaccat tttgttggat 420gtattcgatg cctcttggta
ttgtatcgcc gtgacatccg tgttgagatg cgcaatcgac 480gagttcctgt
tcagaaagat ccaaagacgt gttacggtag gccaaataag ctgattcagt
540tgcggcgaca ccagagaaag cccaacatga accacagcct ccttgcatac
ggattggagt 600gacagttcgc agtgatcgta aatccaattc cgatggaacg
ttaaccgaat tgatacgaca 660agcgcttgtt tcggcattca aatcgaattg
agttttgagt tgttcaaaag cttcagcact 720catcaaataa cggtttttga
attcatccaa tgacaaatcg gacaaatggt tgatggcacc 780tttgttagct
tcaacatatt tcaatgattc caaaaagttt ttacgggcaa cttcttcctc
840ttcaacggtg gcatagtttt tgttgaaggc ttttttgaat tcttcaaaag
ttttgattga 900agccggacg 90937909DNADermatophagoides
farinaeCDS(1)..(909) 37aga cca gct tca atc aaa act ttt gaa gaa ttc
aaa aaa gcc ttc aac 48Arg Pro Ala Ser Ile Lys Thr Phe Glu Glu Phe
Lys Lys Ala Phe Asn1 5 10 15 aaa aac tat gcc acc gtt gaa gag gaa
gaa gtt gcc cgt aaa aac ttt 96Lys Asn Tyr Ala Thr Val Glu Glu Glu
Glu Val Ala Arg Lys Asn Phe 20 25 30 ttg gaa tca ttg aaa tat gtt
gaa gct aac aaa ggt gcc atc aac cat 144Leu Glu Ser Leu Lys Tyr Val
Glu Ala Asn Lys Gly Ala Ile Asn His 35 40 45 ttg tcc gat ttg tca
ttg gat gaa ttc aaa aac cgt tat ttg atg agt 192Leu Ser Asp Leu Ser
Leu Asp Glu Phe Lys Asn Arg Tyr Leu Met Ser 50 55 60 gct gaa gct
ttt gaa caa ctc aaa act caa ttc gat ttg aat gcc gaa 240Ala Glu Ala
Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu65 70 75 80aca
agc gct tgc cgt atc aat tcg gtt aac gtt cca tcg gaa ttg gat 288Thr
Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser Glu Leu Asp 85 90
95 tta cga tca ctg cga act gtc act cca atc cgt atg caa gga ggc tgt
336Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys
100 105 110 ggt tca tgt tgg gct ttc tct ggt gtt gcc gca act gaa tca
gct tat 384Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser
Ala Tyr 115 120 125 ttg gcc tac cgt caa acg tct ttg gat ctt tct gaa
cag gaa ctc gtc 432Leu Ala Tyr Arg Gln Thr Ser Leu Asp Leu Ser Glu
Gln Glu Leu Val 130 135 140 gat tgc gca tct caa cac gga tgt cac ggc
gat aca ata cca aga ggc 480Asp Cys Ala Ser Gln His Gly Cys His Gly
Asp Thr Ile Pro Arg Gly145 150 155 160atc gaa tac atc caa caa aat
ggt gtc gtt gaa gaa aga agc tat cca 528Ile Glu Tyr Ile Gln Gln Asn
Gly Val Val Glu Glu Arg Ser Tyr Pro 165 170 175 tac gtt gca aga gaa
caa aga tgc aga aga cca aat tcg caa cat tac 576Tyr Val Ala Arg Glu
Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 180 185 190 ggt atc tca
aac tac tgc caa att tat cca cca gat gtg aaa caa atc 624Gly Ile Ser
Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln Ile 195 200 205 cgt
gaa gct ttg act caa aca cac aca gct att gcc gtc att att ggc 672Arg
Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val Ile Ile Gly 210 215
220 atc aaa gat ttg aga gct ttc caa cat tat gat gga cga aca atc att
720Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp Gly Arg Thr Ile
Ile225 230 235 240caa cat gac aat ggt tat caa cca aac tat cat gcc
gtc aac att gtc 768Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala
Val Asn Ile Val 245 250 255 ggt tac gga agt aca caa ggc gac gat tat
tgg atc gta cga aac agt 816Gly Tyr Gly Ser Thr Gln Gly Asp Asp Tyr
Trp Ile Val Arg Asn Ser 260 265 270 tgg gat act acc tgg gga gat agc
gga tac gga tat ttc caa gcc gga 864Trp Asp Thr Thr Trp Gly Asp Ser
Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280 285 aac aac ctc atg atg atc
gaa caa tat cca tat gtt gta atc atg 909Asn Asn Leu Met Met Ile Glu
Gln Tyr Pro Tyr Val Val Ile Met 290 295 300
38303PRTDermatophagoides farinae 38Arg Pro Ala Ser Ile Lys Thr Phe
Glu Glu Phe Lys Lys Ala Phe Asn 1 5 10 15 Lys Asn Tyr Ala Thr Val
Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 Leu Glu Ser Leu
Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His 35 40 45 Leu Ser
Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu Met Ser 50 55 60
Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu 65
70 75 80 Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser Glu
Leu Asp 85 90 95 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg Met
Gln Gly Gly Cys 100 105 110 Gly Ser Cys Trp Ala Phe Ser Gly Val Ala
Ala Thr Glu Ser Ala Tyr 115 120 125 Leu Ala Tyr Arg Gln Thr Ser Leu
Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 Asp Cys Ala Ser Gln His
Gly Cys His Gly Asp Thr Ile Pro Arg Gly 145 150 155 160 Ile Glu Tyr
Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 165 170 175 Tyr
Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 180 185
190 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln Ile
195 200 205 Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val Ile
Ile Gly 210 215 220 Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp Gly
Arg Thr Ile Ile 225 230 235 240 Gln His Asp Asn Gly Tyr Gln Pro Asn
Tyr His Ala Val Asn Ile Val 245 250 255 Gly Tyr Gly Ser Thr Gln Gly
Asp Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 Trp Asp Thr Thr Trp
Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280 285 Asn Asn Leu
Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290 295 300
39909DNADermatophagoides farinae 39catgattaca acatatggat attgttcgat
catcatgagg ttgtttccgg cttggaaata 60tccgtatccg ctatctcccc aggtagtatc
ccaactgttt cgtacgatcc aataatcgtc 120gccttgtgta cttccgtaac
cgacaatgtt gacggcatga tagtttggtt gataaccatt 180gtcatgttga
atgattgttc gtccatcata atgttggaaa gctctcaaat ctttgatgcc
240aataatgacg gcaatagctg tgtgtgtttg agtcaaagct tcacggattt
gtttcacatc 300tggtggataa atttggcagt agtttgagat accgtaatgt
tgcgaatttg gtcttctgca 360tctttgttct cttgcaacgt atggatagct
tctttcttca acgacaccat tttgttggat 420gtattcgatg cctcttggta
ttgtatcgcc gtgacatccg tgttgagatg cgcaatcgac 480gagttcctgt
tcagaaagat ccaaagacgt ttgacggtag gccaaataag ctgattcagt
540tgcggcaaca ccagagaaag cccaacatga accacagcct ccttgcatac
ggattggagt 600gacagttcgc agtgatcgta aatccaattc cgatggaacg
ttaaccgaat tgatacggca 660agcgcttgtt tcggcattca aatcgaattg
agttttgagt tgttcaaaag cttcagcact 720catcaaataa cggtttttga
attcatccaa tgacaaatcg gacaaatggt tgatggcacc 780tttgttagct
tcaacatatt tcaatgattc caaaaagttt ttacgggcaa cttcttcctc
840ttcaacggtg gcatagtttt tgttgaaggc ttttttgaat tcttcaaaag
ttttgattga 900agctggtct 90940669DNADermatophagoides
farinaeCDS(1)..(669) 40aca agc gct tgc cgt atc aat tcg gtt aac gtt
cca tcg gaa ttg gat 48Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val
Pro Ser Glu Leu Asp1 5 10 15 tta cga tca ctg cga act gtc act cca
atc cgt atg caa gga ggc tgt 96Leu Arg Ser Leu Arg Thr Val Thr Pro
Ile Arg Met Gln Gly Gly Cys 20 25 30 ggt tca tgt tgg gct ttc tct
ggt gtt gcc gca act gaa tca gct tat 144Gly Ser Cys Trp Ala Phe Ser
Gly Val Ala Ala Thr Glu Ser Ala Tyr 35 40 45 ttg gcc tac cgt caa
acg tct ttg gat ctt tct gaa cag gaa ctc gtc 192Leu Ala Tyr Arg Gln
Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 50 55 60 gat tgc gca
tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 240Asp Cys Ala
Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly65 70 75 80atc
gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca 288Ile
Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro 85 90
95 tac gtt gca aga gaa caa aga tgc aga aga cca aat tcg caa cat tac
336Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln His Tyr
100 105 110 ggt atc tca aac tac tgc caa att tat cca cca gat gtg aaa
caa atc 384Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys
Gln Ile 115 120 125 cgt gaa gct ttg act caa aca cac aca gct att gcc
gtc att att ggc 432Arg Glu Ala Leu Thr Gln Thr His Thr Ala Ile Ala
Val Ile Ile Gly 130 135 140 atc aaa gat ttg aga gct ttc caa cat tat
gat gga cga aca atc att 480Ile Lys Asp Leu Arg Ala Phe Gln His Tyr
Asp Gly Arg Thr Ile Ile145 150 155 160caa cat gac aat ggt tat caa
cca aac tat cat gcc gtc aac att gtc 528Gln His Asp Asn Gly Tyr Gln
Pro Asn Tyr His Ala Val Asn Ile Val 165 170 175 ggt tac gga agt aca
caa ggc gac gat tat tgg atc gta cga aac agt 576Gly Tyr Gly Ser Thr
Gln Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 180 185 190 tgg gat act
acc tgg gga gat agc gga tac gga tat ttc caa gcc gga 624Trp Asp Thr
Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 195 200 205 aac
aac ctc atg atg atc gaa caa tat cca tat gtt gta atc atg 669Asn Asn
Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 210 215 220
41223PRTDermatophagoides farinae 41Thr Ser Ala Cys Arg Ile Asn Ser
Val Asn Val Pro Ser Glu Leu Asp 1 5 10 15 Leu Arg Ser Leu Arg Thr
Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30 Gly Ser Cys Trp
Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 35 40 45 Leu Ala
Tyr Arg Gln Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 50 55 60
Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly 65
70 75 80 Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser
Tyr Pro 85 90 95 Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn
Ser Gln His Tyr 100 105 110 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro
Pro Asp Val Lys Gln Ile 115 120 125 Arg Glu Ala Leu Thr Gln Thr His
Thr Ala Ile Ala Val Ile Ile Gly 130 135 140 Ile Lys Asp Leu Arg Ala
Phe Gln His Tyr Asp Gly Arg Thr Ile Ile 145 150 155 160 Gln His Asp
Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 165 170 175 Gly
Tyr Gly Ser Thr Gln Gly Asp Asp Tyr Trp Ile Val Arg Asn Ser 180 185
190 Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly
195 200 205 Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile
Met 210 215 220 42669DNADermatophagoides farinae 42catgattaca
acatatggat attgttcgat catcatgagg ttgtttccgg cttggaaata 60tccgtatccg
ctatctcccc aggtagtatc ccaactgttt cgtacgatcc aataatcgtc
120gccttgtgta cttccgtaac cgacaatgtt gacggcatga tagtttggtt
gataaccatt 180gtcatgttga atgattgttc gtccatcata atgttggaaa
gctctcaaat ctttgatgcc 240aataatgacg gcaatagctg tgtgtgtttg
agtcaaagct tcacggattt gtttcacatc 300tggtggataa atttggcagt
agtttgagat accgtaatgt tgcgaatttg gtcttctgca 360tctttgttct
cttgcaacgt atggatagct tctttcttca acgacaccat tttgttggat
420gtattcgatg cctcttggta ttgtatcgcc gtgacatccg tgttgagatg
cgcaatcgac 480gagttcctgt tcagaaagat ccaaagacgt ttgacggtag
gccaaataag ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga
accacagcct ccttgcatac ggattggagt 600gacagttcgc agtgatcgta
aatccaattc cgatggaacg ttaaccgaat tgatacggca 660agcgcttgt
66943669DNADermatophagoides farinaeCDS(1)..(669) 43aca agc gct tgc
cgt atc aat tcg gtt aac gtt cca tcg gaa ttg gat 48Thr Ser Ala Cys
Arg Ile Asn Ser Val Asn Val Pro Ser Glu Leu Asp1 5 10 15 tta cga
tca ctg cga act gtc act cca atc cgt atg caa gga ggc tgt 96Leu Arg
Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25 30
ggt tca tgt tgg gct ttc tct ggt gtc gcc gca act gaa tca gct tat
144Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr
35 40 45 ttg gcc tac cgt aac acg tct ttg gat ctt tct gaa cag gaa
ctc gtc 192Leu Ala Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu
Leu Val 50 55 60 gat tgc gca tct caa cac gga tgt cac ggc gat aca
ata cca aga ggc 240Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr
Ile Pro Arg Gly65 70 75 80atc gaa tac atc caa caa aat ggt gtc gtt
gaa gaa aga agc tat cca 288Ile Glu Tyr Ile Gln Gln Asn Gly Val Val
Glu Glu Arg Ser Tyr Pro 85 90 95 tac gtt gca cgt gaa caa cgt tgc
cgt cgt cca aat tcg caa cat tac 336Tyr Val Ala Arg Glu Gln Arg Cys
Arg Arg Pro Asn Ser Gln His Tyr 100 105 110 ggt atc tca aac tac tgc
caa att tat cca cca gat gtg aaa caa atc 384Gly Ile Ser Asn Tyr Cys
Gln Ile Tyr Pro Pro Asp Val Lys Gln Ile 115 120 125 cgt gaa gct ttg
act caa aca cac aca gct att gcc gtc att att ggc 432Arg Glu Ala Leu
Thr Gln Thr His Thr Ala Ile Ala Val Ile Ile Gly 130 135 140 att aaa
gat ttg aga gct ttt caa cat tat gat gga cga aca atc att 480Ile Lys
Asp Leu Arg Ala Phe Gln His Tyr Asp Gly Arg Thr Ile Ile145 150 155
160caa cat gac aat ggt tat caa cca aac tat cat gcc gtc aac att gtc
528Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val
165 170 175 ggt tac gga agt aca caa ggc gtc gat tat tgg atc gtg cga
aac agt 576Gly Tyr Gly Ser Thr Gln Gly Val Asp Tyr Trp Ile Val Arg
Asn Ser 180 185 190 tgg gat act acc tgg ggt gat agc gga tac gga tat
ttc caa gcc gga 624Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr
Phe Gln Ala Gly 195 200 205 aac aac ctc atg atg atc gaa caa tat cca
tac gtt gta atc atg 669Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr
Val Val Ile Met 210 215 220 44223PRTDermatophagoides farinae 44Thr
Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser Glu Leu Asp 1 5 10
15 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys
20 25 30 Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser
Ala Tyr 35 40 45 Leu Ala Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu
Gln Glu Leu Val 50 55 60 Asp Cys Ala Ser Gln His Gly Cys His Gly
Asp Thr Ile Pro Arg Gly 65 70 75 80 Ile Glu Tyr Ile Gln Gln Asn Gly
Val Val Glu Glu Arg Ser Tyr Pro 85 90 95 Tyr Val Ala Arg Glu Gln
Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 100 105 110 Gly Ile Ser Asn
Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln Ile 115 120 125 Arg Glu
Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val Ile Ile Gly 130 135 140
Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp Gly Arg Thr Ile Ile 145
150 155 160 Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn
Ile Val 165 170 175 Gly Tyr Gly Ser Thr Gln Gly Val Asp Tyr Trp Ile
Val Arg Asn Ser 180 185 190 Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr
Gly Tyr Phe Gln Ala Gly 195 200 205 Asn Asn Leu Met Met Ile Glu Gln
Tyr Pro Tyr Val Val Ile Met 210 215 220 45669DNADermatophagoides
farinae 45catgattaca acgtatggat attgttcgat catcatgagg ttgtttccgg
cttggaaata 60tccgtatccg ctatcacccc aggtagtatc ccaactgttt cgcacgatcc
aataatcgac 120gccttgtgta cttccgtaac cgacaatgtt gacggcatga
tagtttggtt gataaccatt 180gtcatgttga atgattgttc gtccatcata
atgttgaaaa gctctcaaat ctttaatgcc 240aataatgacg gcaatagctg
tgtgtgtttg agtcaaagct tcacggattt gtttcacatc 300tggtggataa
atttggcagt agtttgagat accgtaatgt tgcgaatttg gacgacggca
360acgttgttca cgtgcaacgt atggatagct tctttcttca acgacaccat
tttgttggat 420gtattcgatg cctcttggta ttgtatcgcc gtgacatccg
tgttgagatg cgcaatcgac 480gagttcctgt tcagaaagat ccaaagacgt
gttacggtag gccaaataag ctgattcagt 540tgcggcgaca ccagagaaag
cccaacatga accacagcct ccttgcatac ggattggagt 600gacagttcgc
agtgatcgta aatccaattc cgatggaacg ttaaccgaat tgatacggca 660agcgcttgt
6694645DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 46cgcgtccctc tcgagaaaag agaggctaga ccagcttcaa
tcaaa 454742DNAArtificial SequenceDescription of Artificial
Sequence Synthetic Primer 47gggctttcct tttgcggccg ctcacatgat
tacaacatat gg 424833DNAArtificial SequenceDescription of Artificial
Sequence Synthetic Primer 48gcaagagaac aaagatgcag aagaccaaat tcg
334934DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 49gcgaatttgg tcttctgcat ctttgttctc ttgc
345037DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 50gggagctcca tatgcgtccg gcttcaatca aaaactt
375130DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 51gcgaatttgg acgacggcaa cgttgttcac
305236DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 52ccctcgcgga tcctcacatg attacaacgt atggat
365330DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 53gtgaacaacg ttgccgtcgt ccaaattcgc
305442DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 54cgcatagtcc ctctcgagaa aagaacaagc gcttgccgta tc
425523PRTDermatophagoides farinae 55Ala Glu Thr Ser Ala Cys Arg Ile
Asn Ser Val Asn Val Pro Ser Glu 1 5 10 15 Leu Asp Leu Arg Ser Leu
Arg 20 5621PRTDermatophagoides farinae 56Thr Ser Ala Cys Arg Ile
Asn Ser Val Asn Val Pro Ser Glu Leu Asp 1 5 10 15 Leu Arg Ser Leu
Arg 20 5746DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 57gccgcaactg aatcagctta tttggcctac cgtcaaacgt
ctttgg 465845DNAArtificial SequenceDescription of Artificial
Sequence Synthetic Primer 58gacaccagag aaagcccaac atgaaccaca
gcctccttgc atacg 455923PRTDermatophagoides farinae 59Met Arg Pro
Ala Ser Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala Phe 1 5 10 15 Asn
Lys Asn Tyr Ala Thr Val 20 6037DNAArtificial SequenceDescription of
Artificial Sequence Synthetic Primer 60aggagacata tgcgtccatc
ctcgatcaaa acttttg 376132DNAArtificial SequenceDescription of
Artificial Sequence Synthetic Primer 61ttgtgcattt ggacgacggc
atgattgttc tc 326240DNAArtificial SequenceDescription of Artificial
Sequence Synthetic Primer 62tcaccctgga tccctacagg atgacaacgt
atggatattc 406332DNAArtificial SequenceDescription of Artificial
Sequence Synthetic Primer 63gagaacaatc atgccgtcgt ccaaatgcac aa
3264909DNADermatophagoides pteronyssinusCDS(1)..(909) 64atg cgt cca
tcc tcg atc aaa act ttt gaa gaa tac aaa aaa gcc ttc 48Met Arg Pro
Ser Ser Ile Lys Thr Phe Glu Glu Tyr Lys Lys Ala Phe1 5 10 15 aac
aaa agt tat gct acc ttc gaa gat gaa gaa gct gcc cgt aaa aac 96Asn
Lys Ser Tyr Ala Thr Phe Glu Asp Glu Glu Ala Ala Arg Lys Asn 20 25
30 ttt ttg gaa tca gta aaa tat gtt caa tca aat gga ggt gcc atc aac
144Phe Leu Glu Ser Val Lys Tyr Val Gln Ser Asn Gly Gly Ala Ile Asn
35 40 45 cat ttg tcc gat ttg tcg ttg gat gaa ttc aaa aac cga ttt
ttg atg 192His Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Phe
Leu Met 50 55 60 agt gca gaa gct ttt gaa cac ctc aaa act caa ttc
gat ttg aat gct 240Ser Ala Glu Ala Phe Glu His Leu Lys Thr Gln Phe
Asp Leu Asn Ala65 70 75 80gaa act aac gcc tgc agt atc aat gga aat
gct cca gct gaa atc gat 288Glu Thr Asn Ala Cys Ser Ile Asn Gly Asn
Ala Pro Ala Glu Ile Asp 85 90 95 ttg cga caa atg cga act gtc act
ccc att cgt atg caa gga ggc tgt 336Leu Arg Gln Met Arg Thr Val Thr
Pro Ile Arg Met Gln Gly Gly Cys 100 105 110 ggt tca tgt tgg gct ttc
tct ggt gtt gcc gca acc gaa tca gct tat 384Gly Ser Cys Trp Ala Phe
Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 115 120 125 ttg gct tac cgt
aat caa tca ttg gat ctt gct gaa caa gaa tta gtc 432Leu Ala Tyr Arg
Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu Leu Val 130 135 140 gat tgt
gct tcc caa cac ggt tgt cat ggt gat acc att cca cgt ggt 480Asp Cys
Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly145 150 155
160att gaa tac atc caa cat aat ggt gtc gtc caa gaa agc tac tat cga
528Ile Glu Tyr Ile Gln His Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg
165 170 175 tac gtt gca cga gaa caa tca tgc cgt cgt cca aat gca caa
cgt ttc 576Tyr Val Ala Arg Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln
Arg Phe 180 185 190 ggt atc tca aac tat tgc caa att tac cca cca aat
gta aac aaa att 624Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn
Val Asn Lys Ile 195 200 205 cgt gaa gct ttg gct caa acc cac agc gct
att gcc gtc att att ggc 672Arg Glu Ala Leu Ala Gln Thr His Ser Ala
Ile Ala Val Ile Ile Gly 210 215 220 atc aaa gat tta gac gca ttc cgt
cat tat gat ggc cga aca atc att 720Ile Lys Asp Leu Asp Ala Phe Arg
His Tyr Asp Gly Arg Thr Ile Ile225 230 235 240caa cgc gat aat ggt
tac caa cca aac tat cac gct gtc aac att gtt 768Gln Arg Asp Asn Gly
Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255 ggt tac agt
aac gca caa ggt gtc gat tat tgg atc gta cga aac agt 816Gly Tyr Ser
Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 tgg
gat acc aat tgg ggt gat aat ggt tac ggt tat ttt gct gcc aac 864Trp
Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala Ala Asn 275 280
285 atc gat ttg atg atg att gaa gaa tat cca tac gtt gtc atc ctg
909Ile Asp Leu Met Met Ile Glu Glu Tyr Pro Tyr Val Val Ile Leu 290
295 300 65303PRTDermatophagoides pteronyssinus 65Met Arg Pro Ser
Ser Ile Lys Thr Phe Glu Glu Tyr Lys Lys Ala Phe 1 5
10 15 Asn Lys Ser Tyr Ala Thr Phe Glu Asp Glu Glu Ala Ala Arg Lys
Asn 20 25 30 Phe Leu Glu Ser Val Lys Tyr Val Gln Ser Asn Gly Gly
Ala Ile Asn 35 40 45 His Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys
Asn Arg Phe Leu Met 50 55 60 Ser Ala Glu Ala Phe Glu His Leu Lys
Thr Gln Phe Asp Leu Asn Ala 65 70 75 80 Glu Thr Asn Ala Cys Ser Ile
Asn Gly Asn Ala Pro Ala Glu Ile Asp 85 90 95 Leu Arg Gln Met Arg
Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys 100 105 110 Gly Ser Cys
Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 115 120 125 Leu
Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu Leu Val 130 135
140 Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly
145 150 155 160 Ile Glu Tyr Ile Gln His Asn Gly Val Val Gln Glu Ser
Tyr Tyr Arg 165 170 175 Tyr Val Ala Arg Glu Gln Ser Cys Arg Arg Pro
Asn Ala Gln Arg Phe 180 185 190 Gly Ile Ser Asn Tyr Cys Gln Ile Tyr
Pro Pro Asn Val Asn Lys Ile 195 200 205 Arg Glu Ala Leu Ala Gln Thr
His Ser Ala Ile Ala Val Ile Ile Gly 210 215 220 Ile Lys Asp Leu Asp
Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile 225 230 235 240 Gln Arg
Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255
Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 260
265 270 Trp Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala Ala
Asn 275 280 285 Ile Asp Leu Met Met Ile Glu Glu Tyr Pro Tyr Val Val
Ile Leu 290 295 300 66909DNADermatophagoides pteronyssinus
66caggatgaca acgtatggat attcttcaat catcatcaaa tcgatgttgg cagcaaaata
60accgtaacca ttatcacccc aattggtatc ccaactgttt cgtacgatcc aataatcgac
120accttgtgcg ttactgtaac caacaatgtt gacagcgtga tagtttggtt
ggtaaccatt 180atcgcgttga atgattgttc ggccatcata atgacggaat
gcgtctaaat ctttgatgcc 240aataatgacg gcaatagcgc tgtgggtttg
agccaaagct tcacgaattt tgtttacatt 300tggtgggtaa atttggcaat
agtttgagat accgaaacgt tgtgcatttg gacgacggca 360tgattgttct
cgtgcaacgt atcgatagta gctttcttgg acgacaccat tatgttggat
420gtattcaata ccacgtggaa tggtatcacc atgacaaccg tgttgggaag
cacaatcgac 480taattcttgt tcagcaagat ccaatgattg attacggtaa
gccaaataag ctgattcggt 540tgcggcaaca ccagagaaag cccaacatga
accacagcct ccttgcatac gaatgggagt 600gacagttcgc atttgtcgca
aatcgatttc agctggagca tttccattga tactgcaggc 660gttagtttca
gcattcaaat cgaattgagt tttgaggtgt tcaaaagctt ctgcactcat
720caaaaatcgg tttttgaatt catccaacga caaatcggac aaatggttga
tggcacctcc 780atttgattga acatatttta ctgattccaa aaagttttta
cgggcagctt cttcatcttc 840gaaggtagca taacttttgt tgaaggcttt
tttgtattct tcaaaagttt tgatcgagga 900tggacgcat 9096743DNAArtificial
SequenceDescription of Artificial Sequence Synthetic Primer
67aaaaaaaaac atatgactaa cgcctgcagt atcaatggaa atg
436842DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 68aaaaaaaaac tcgagctaca ggatgacaac gtatggatat tc
4269669DNADermatophagoides pteronyssinusCDS(1)..(669) 69atg act aac
gcc tgc agt atc aat gga aat gct cca gct gaa atc gat 48Met Thr Asn
Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp1 5 10 15 ttg
cga caa atg cga act gtc act ccc att cgt atg caa gga ggc tgt 96Leu
Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys 20 25
30 ggt tca tgt tgg gct ttc tct ggt gtt gcc gca acc gaa tca gct tat
144Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr
35 40 45 ttg gct tac cgt aat caa tca ttg gat ctt gct gaa caa gaa
tta gtc 192Leu Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln Glu
Leu Val 50 55 60 gat tgt gct tcc caa cac ggt tgt cat ggt gat acc
att cca cgt ggt 240Asp Cys Ala Ser Gln His Gly Cys His Gly Asp Thr
Ile Pro Arg Gly65 70 75 80att gaa tac atc caa cat aat ggt gtc gtc
caa gaa agc tac tat cga 288Ile Glu Tyr Ile Gln His Asn Gly Val Val
Gln Glu Ser Tyr Tyr Arg 85 90 95 tac gtt gca cga gaa caa tca tgc
cgt cgt cca aat gca caa cgt ttc 336Tyr Val Ala Arg Glu Gln Ser Cys
Arg Arg Pro Asn Ala Gln Arg Phe 100 105 110 ggt atc tca aac tat tgc
caa att tac cca cca aat gta aac aaa att 384Gly Ile Ser Asn Tyr Cys
Gln Ile Tyr Pro Pro Asn Val Asn Lys Ile 115 120 125 cgt gaa gct ttg
gct caa acc cac agc gct att gcc gtc att att ggc 432Arg Glu Ala Leu
Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly 130 135 140 atc aaa
gat tta gac gca ttc cgt cat tat gat ggc cga aca atc att 480Ile Lys
Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile145 150 155
160caa cgc gat aat ggt tac caa cca aac tat cac gct gtc aac att gtt
528Gln Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val
165 170 175 ggt tac agt aac gca caa ggt gtc gat tat tgg atc gta cga
aac agt 576Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg
Asn Ser 180 185 190 tgg gat acc aat tgg ggt gat aat ggt tac ggt tat
ttt gct gcc aac 624Trp Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr
Phe Ala Ala Asn 195 200 205 atc gat ttg atg atg att gaa gaa tat cca
tac gtt gtc atc ctg 669Ile Asp Leu Met Met Ile Glu Glu Tyr Pro Tyr
Val Val Ile Leu 210 215 220 70223PRTDermatophagoides pteronyssinus
70Met Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp 1
5 10 15 Leu Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly
Cys 20 25 30 Gly Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu
Ser Ala Tyr 35 40 45 Leu Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala
Glu Gln Glu Leu Val 50 55 60 Asp Cys Ala Ser Gln His Gly Cys His
Gly Asp Thr Ile Pro Arg Gly 65 70 75 80 Ile Glu Tyr Ile Gln His Asn
Gly Val Val Gln Glu Ser Tyr Tyr Arg 85 90 95 Tyr Val Ala Arg Glu
Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg Phe 100 105 110 Gly Ile Ser
Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Val Asn Lys Ile 115 120 125 Arg
Glu Ala Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly 130 135
140 Ile Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile
145 150 155 160 Gln Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val
Asn Ile Val 165 170 175 Gly Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp
Ile Val Arg Asn Ser 180 185 190 Trp Asp Thr Asn Trp Gly Asp Asn Gly
Tyr Gly Tyr Phe Ala Ala Asn 195 200 205 Ile Asp Leu Met Met Ile Glu
Glu Tyr Pro Tyr Val Val Ile Leu 210 215 220
71669DNADermatophagoides pteronyssinus 71caggatgaca acgtatggat
attcttcaat catcatcaaa tcgatgttgg cagcaaaata 60accgtaacca ttatcacccc
aattggtatc ccaactgttt cgtacgatcc aataatcgac 120accttgtgcg
ttactgtaac caacaatgtt gacagcgtga tagtttggtt ggtaaccatt
180atcgcgttga atgattgttc ggccatcata atgacggaat gcgtctaaat
ctttgatgcc 240aataatgacg gcaatagcgc tgtgggtttg agccaaagct
tcacgaattt tgtttacatt 300tggtgggtaa atttggcaat agtttgagat
accgaaacgt tgtgcatttg gacgacggca 360tgattgttct cgtgcaacgt
atcgatagta gctttcttgg acgacaccat tatgttggat 420gtattcaata
ccacgtggaa tggtatcacc atgacaaccg tgttgggaag cacaatcgac
480taattcttgt tcagcaagat ccaatgattg attacggtaa gccaaataag
ctgattcggt 540tgcggcaaca ccagagaaag cccaacatga accacagcct
ccttgcatac gaatgggagt 600gacagttcgc atttgtcgca aatcgatttc
agctggagca tttccattga tactgcaggc 660gttagtcat 6697245DNAArtificial
SequenceDescription of Artificial Sequence Synthetic Primer
72gtggctctcg agaagagaga ggctcgtcca tcttccatca aaact
457344DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 73ccgaatcttt gtgcatttgg tcttctgcat gattgttctc gtgc
447444DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 74gcacgagaac aatcatgcag aagaccaaat gcacaaagat tcgg
447538DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 75gctcttgcgg ccgcttacaa aatgacaacg tatggata
3876906DNADermatophagoides pteronyssinusCDS(1)..(906) 76cgt cca tct
tcc atc aaa act ttt gaa gaa tac aaa aaa gcc ttc aac 48Arg Pro Ser
Ser Ile Lys Thr Phe Glu Glu Tyr Lys Lys Ala Phe Asn1 5 10 15 aaa
agt tat gct acc ttc gaa gat gaa gaa gct gcc cgt aaa aac ttt 96Lys
Ser Tyr Ala Thr Phe Glu Asp Glu Glu Ala Ala Arg Lys Asn Phe 20 25
30 ttg gaa tca gta aaa tat gtt caa tca aat gga ggt gcc atc aac cat
144Leu Glu Ser Val Lys Tyr Val Gln Ser Asn Gly Gly Ala Ile Asn His
35 40 45 ttg tcc gat ttg tcg ttg gat gaa ttc aaa aac cga ttt ttg
atg agt 192Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Phe Leu
Met Ser 50 55 60 gca gaa gct ttt gaa cac ctc aaa act caa ttc gat
ttg aat gct gaa 240Ala Glu Ala Phe Glu His Leu Lys Thr Gln Phe Asp
Leu Asn Ala Glu65 70 75 80act aac gcc tgc agt atc aat gga aat gct
cca gct gaa atc gat ttg 288Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala
Pro Ala Glu Ile Asp Leu 85 90 95 cga caa atg cga act gtc act ccc
att cgt atg caa gga ggc tgt ggt 336Arg Gln Met Arg Thr Val Thr Pro
Ile Arg Met Gln Gly Gly Cys Gly 100 105 110 tca tgt tgg gct ttc tct
ggt gtt gcc gca act gaa tca gct tat ttg 384Ser Cys Trp Ala Phe Ser
Gly Val Ala Ala Thr Glu Ser Ala Tyr Leu 115 120 125 gct tac cgt aat
caa tca ttg gat ctt gct gaa caa gaa tta gtc gat 432Ala Tyr Arg Asn
Gln Ser Leu Asp Leu Ala Glu Gln Glu Leu Val Asp 130 135 140 tgt gct
tcc caa cac ggt tgt cat ggt gat acc att cca cgt ggt att 480Cys Ala
Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly Ile145 150 155
160gaa tac atc caa cat aat ggt gtc gtc caa gaa agc tac tat cga tac
528Glu Tyr Ile Gln His Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg Tyr
165 170 175 gtt gca cga gaa caa tca tgc aga aga cca aat gca caa aga
ttc ggt 576Val Ala Arg Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg
Phe Gly 180 185 190 atc tca aac tat tgc caa att tac cca cca aat gcg
aac aaa att cgt 624Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Ala
Asn Lys Ile Arg 195 200 205 gaa gct ttg gct caa acc cac agc gct att
gcc gtc att att ggc atc 672Glu Ala Leu Ala Gln Thr His Ser Ala Ile
Ala Val Ile Ile Gly Ile 210 215 220 aaa gat tta gac gca ttc cgt cat
tat gat ggc cga aca atc att caa 720Lys Asp Leu Asp Ala Phe Arg His
Tyr Asp Gly Arg Thr Ile Ile Gln225 230 235 240cgc gat aat ggt tac
caa cca aac tat cac gct gtc aac att gtt ggt 768Arg Asp Asn Gly Tyr
Gln Pro Asn Tyr His Ala Val Asn Ile Val Gly 245 250 255 tac agt aac
gca caa ggt gtc gat tat tgg atc gta cga aac agt tgg 816Tyr Ser Asn
Ala Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser Trp 260 265 270 gat
acc aat tgg ggt gat aat ggt tac ggt tat ttt gct gcc aac atc 864Asp
Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr Phe Ala Ala Asn Ile 275 280
285 gat tta atg atg att gaa gaa tat cca tac gtt gtc att ttg 906Asp
Leu Met Met Ile Glu Glu Tyr Pro Tyr Val Val Ile Leu 290 295 300
77302PRTDermatophagoides pteronyssinus 77Arg Pro Ser Ser Ile Lys
Thr Phe Glu Glu Tyr Lys Lys Ala Phe Asn 1 5 10 15 Lys Ser Tyr Ala
Thr Phe Glu Asp Glu Glu Ala Ala Arg Lys Asn Phe 20 25 30 Leu Glu
Ser Val Lys Tyr Val Gln Ser Asn Gly Gly Ala Ile Asn His 35 40 45
Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Phe Leu Met Ser 50
55 60 Ala Glu Ala Phe Glu His Leu Lys Thr Gln Phe Asp Leu Asn Ala
Glu 65 70 75 80 Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu
Ile Asp Leu 85 90 95 Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met
Gln Gly Gly Cys Gly 100 105 110 Ser Cys Trp Ala Phe Ser Gly Val Ala
Ala Thr Glu Ser Ala Tyr Leu 115 120 125 Ala Tyr Arg Asn Gln Ser Leu
Asp Leu Ala Glu Gln Glu Leu Val Asp 130 135 140 Cys Ala Ser Gln His
Gly Cys His Gly Asp Thr Ile Pro Arg Gly Ile 145 150 155 160 Glu Tyr
Ile Gln His Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg Tyr 165 170 175
Val Ala Arg Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg Phe Gly 180
185 190 Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Ala Asn Lys Ile
Arg 195 200 205 Glu Ala Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile
Ile Gly Ile 210 215 220 Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly
Arg Thr Ile Ile Gln 225 230 235 240 Arg Asp Asn Gly Tyr Gln Pro Asn
Tyr His Ala Val Asn Ile Val Gly 245 250 255 Tyr Ser Asn Ala Gln Gly
Val Asp Tyr Trp Ile Val Arg Asn Ser Trp 260 265 270 Asp Thr Asn Trp
Gly Asp Asn Gly Tyr Gly Tyr Phe Ala Ala Asn Ile 275 280 285 Asp Leu
Met Met Ile Glu Glu Tyr Pro Tyr Val Val Ile Leu 290 295 300
78906DNADermatophagoides pteronyssinus 78caaaatgaca acgtatggat
attcttcaat catcattaaa tcgatgttgg cagcaaaata 60accgtaacca ttatcacccc
aattggtatc ccaactgttt cgtacgatcc aataatcgac 120accttgtgcg
ttactgtaac caacaatgtt gacagcgtga tagtttggtt ggtaaccatt
180atcgcgttga atgattgttc ggccatcata atgacggaat gcgtctaaat
ctttgatgcc 240aataatgacg gcaatagcgc tgtgggtttg agccaaagct
tcacgaattt tgttcgcatt 300tggtgggtaa atttggcaat agtttgagat
accgaatctt tgtgcatttg gtcttctgca 360tgattgttct cgtgcaacgt
atcgatagta gctttcttgg acgacaccat tatgttggat 420gtattcaata
ccacgtggaa tggtatcacc atgacaaccg tgttgggaag cacaatcgac
480taattcttgt tcagcaagat ccaatgattg attacggtaa gccaaataag
ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga accacagcct
ccttgcatac gaatgggagt 600gacagttcgc atttgtcgca aatcgatttc
agctggagca tttccattga tactgcaggc 660gttagtttca gcattcaaat
cgaattgagt tttgaggtgt tcaaaagctt ctgcactcat 720caaaaatcgg
tttttgaatt catccaacga caaatcggac aaatggttga tggcacctcc
780atttgattga acatatttta ctgattccaa aaagttttta cgggcagctt
cttcatcttc 840gaaggtagca taacttttgt tgaaggcttt tttgtattct
tcaaaagttt tgatggaaga 900tggacg 9067943DNAArtificial
SequenceDescription of Artificial Sequence Synthetic Primer
79ggggtatctc tcgagaagag aactaacgcc tgcagtatca atg
438041DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 80aagctggcgg ccgcttacaa aatgacaacg tatggatatt c
4181666DNADermatophagoides pteronyssinusCDS(1)..(666) 81act aac gcc
tgc agt atc aat gga aat gct cca gct gaa atc gat ttg 48Thr Asn Ala
Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp Leu1 5 10
15 cga caa atg cga act gtc act ccc att cgt atg caa gga ggc tgt ggt
96Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys Gly
20 25 30 tca tgt tgg gct ttc tct ggt gtt gcc gca act gaa tca gct
tat ttg 144Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala
Tyr Leu 35 40 45 gct tac cgt aat caa tca ttg gat ctt gct gaa caa
gaa tta gtc gat 192Ala Tyr Arg Asn Gln Ser Leu Asp Leu Ala Glu Gln
Glu Leu Val Asp 50 55 60 tgt gct tcc caa cac ggt tgt cat ggt gat
acc att cca cgt ggt att 240Cys Ala Ser Gln His Gly Cys His Gly Asp
Thr Ile Pro Arg Gly Ile65 70 75 80gaa tac atc caa cat aat ggt gtc
gtc caa gaa agc tac tat cga tac 288Glu Tyr Ile Gln His Asn Gly Val
Val Gln Glu Ser Tyr Tyr Arg Tyr 85 90 95 gtt gca cga gaa caa tca
tgc aga aga cca aat gca caa aga ttc ggt 336Val Ala Arg Glu Gln Ser
Cys Arg Arg Pro Asn Ala Gln Arg Phe Gly 100 105 110 atc tca aac tat
tgc caa att tac cca cca aat gcg aac aaa att cgt 384Ile Ser Asn Tyr
Cys Gln Ile Tyr Pro Pro Asn Ala Asn Lys Ile Arg 115 120 125 gaa gct
ttg gct caa acc cac agc gct att gcc gtc att att ggc atc 432Glu Ala
Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly Ile 130 135 140
aaa gat tta gac gca ttc cgt cat tat gat ggc cga aca atc att caa
480Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile
Gln145 150 155 160cgc gat aat ggt tac caa cca aac tat cac gct gtc
aac att gtt ggt 528Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val
Asn Ile Val Gly 165 170 175 tac agt aac gca caa ggt gtc gat tat tgg
atc gta cga aac agt tgg 576Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp
Ile Val Arg Asn Ser Trp 180 185 190 gat acc aat tgg ggt gat aat ggt
tac ggt tat ttt gct gcc aac atc 624Asp Thr Asn Trp Gly Asp Asn Gly
Tyr Gly Tyr Phe Ala Ala Asn Ile 195 200 205 gat tta atg atg att gaa
gaa tat cca tac gtt gtc att ttg 666Asp Leu Met Met Ile Glu Glu Tyr
Pro Tyr Val Val Ile Leu 210 215 220 82222PRTDermatophagoides
pteronyssinus 82Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu
Ile Asp Leu 1 5 10 15 Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met
Gln Gly Gly Cys Gly 20 25 30 Ser Cys Trp Ala Phe Ser Gly Val Ala
Ala Thr Glu Ser Ala Tyr Leu 35 40 45 Ala Tyr Arg Asn Gln Ser Leu
Asp Leu Ala Glu Gln Glu Leu Val Asp 50 55 60 Cys Ala Ser Gln His
Gly Cys His Gly Asp Thr Ile Pro Arg Gly Ile 65 70 75 80 Glu Tyr Ile
Gln His Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg Tyr 85 90 95 Val
Ala Arg Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg Phe Gly 100 105
110 Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Ala Asn Lys Ile Arg
115 120 125 Glu Ala Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile
Gly Ile 130 135 140 Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg
Thr Ile Ile Gln 145 150 155 160 Arg Asp Asn Gly Tyr Gln Pro Asn Tyr
His Ala Val Asn Ile Val Gly 165 170 175 Tyr Ser Asn Ala Gln Gly Val
Asp Tyr Trp Ile Val Arg Asn Ser Trp 180 185 190 Asp Thr Asn Trp Gly
Asp Asn Gly Tyr Gly Tyr Phe Ala Ala Asn Ile 195 200 205 Asp Leu Met
Met Ile Glu Glu Tyr Pro Tyr Val Val Ile Leu 210 215 220
83666DNADermatophagoides pteronyssinus 83caaaatgaca acgtatggat
attcttcaat catcattaaa tcgatgttgg cagcaaaata 60accgtaacca ttatcacccc
aattggtatc ccaactgttt cgtacgatcc aataatcgac 120accttgtgcg
ttactgtaac caacaatgtt gacagcgtga tagtttggtt ggtaaccatt
180atcgcgttga atgattgttc ggccatcata atgacggaat gcgtctaaat
ctttgatgcc 240aataatgacg gcaatagcgc tgtgggtttg agccaaagct
tcacgaattt tgttcgcatt 300tggtgggtaa atttggcaat agtttgagat
accgaatctt tgtgcatttg gtcttctgca 360tgattgttct cgtgcaacgt
atcgatagta gctttcttgg acgacaccat tatgttggat 420gtattcaata
ccacgtggaa tggtatcacc atgacaaccg tgttgggaag cacaatcgac
480taattcttgt tcagcaagat ccaatgattg attacggtaa gccaaataag
ctgattcagt 540tgcggcaaca ccagagaaag cccaacatga accacagcct
ccttgcatac gaatgggagt 600gacagttcgc atttgtcgca aatcgatttc
agctggagca tttccattga tactgcaggc 660gttagt 6668433DNAArtificial
SequenceDescription of Artificial Sequence Synthetic Primer
84aaataagctg attcagttgc ggcaacacca gag 338532DNAArtificial
SequenceDescription of Artificial Sequence Synthetic Primer
85ggcttaccgt aatcaaggtt tggatcttgc tg 3286906DNADermatophagoides
pteronyssinusCDS(1)..(906) 86cgt cca tct tcc atc aaa act ttt gaa
gaa tac aaa aaa gcc ttc aac 48Arg Pro Ser Ser Ile Lys Thr Phe Glu
Glu Tyr Lys Lys Ala Phe Asn1 5 10 15 aaa agt tat gct acc ttc gaa
gat gaa gaa gct gcc cgt aaa aac ttt 96Lys Ser Tyr Ala Thr Phe Glu
Asp Glu Glu Ala Ala Arg Lys Asn Phe 20 25 30 ttg gaa tca gta aaa
tat gtt caa tca aat gga ggt gcc atc aac cat 144Leu Glu Ser Val Lys
Tyr Val Gln Ser Asn Gly Gly Ala Ile Asn His 35 40 45 ttg tcc gat
ttg tcg ttg gat gaa ttc aaa aac cga ttt ttg atg agt 192Leu Ser Asp
Leu Ser Leu Asp Glu Phe Lys Asn Arg Phe Leu Met Ser 50 55 60 gca
gaa gct ttt gaa cac ctc aaa act caa ttc gat ttg aat gct gaa 240Ala
Glu Ala Phe Glu His Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu65 70 75
80act aac gcc tgc agt atc aat gga aat gct cca gct gaa atc gat ttg
288Thr Asn Ala Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp Leu
85 90 95 cga caa atg cga act gtc act ccc att cgt atg caa gga ggc
tgt ggt 336Arg Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly
Cys Gly 100 105 110 tca tgt tgg gct ttc tct ggt gtt gcc gca act gaa
tca gct tat ttg 384Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu
Ser Ala Tyr Leu 115 120 125 gct tac cgt aat caa ggt ttg gat ctt gct
gaa caa gaa tta gtc gat 432Ala Tyr Arg Asn Gln Gly Leu Asp Leu Ala
Glu Gln Glu Leu Val Asp 130 135 140 tgt gct tcc caa cac ggt tgt cat
ggt gat acc att cca cgt ggt att 480Cys Ala Ser Gln His Gly Cys His
Gly Asp Thr Ile Pro Arg Gly Ile145 150 155 160gaa tac atc caa cat
aat ggt gtc gtc caa gaa agc tac tat cga tac 528Glu Tyr Ile Gln His
Asn Gly Val Val Gln Glu Ser Tyr Tyr Arg Tyr 165 170 175 gtt gca cga
gaa caa tca tgc aga aga cca aat gca caa aga ttc ggt 576Val Ala Arg
Glu Gln Ser Cys Arg Arg Pro Asn Ala Gln Arg Phe Gly 180 185 190 atc
tca aac tat tgc caa att tac cca cca aat gcg aac aaa att cgt 624Ile
Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asn Ala Asn Lys Ile Arg 195 200
205 gaa gct ttg gct caa acc cac agc gct att gcc gtc att att ggc atc
672Glu Ala Leu Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly Ile
210 215 220 aaa gat tta gac gca ttc cgt cat tat gat ggc cga aca atc
att caa 720Lys Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile
Ile Gln225 230 235 240cgc gat aat ggt tac caa cca aac tat cac gct
gtc aac att gtt ggt 768Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala
Val Asn Ile Val Gly 245 250 255 tac agt aac gca caa ggt gtc gat tat
tgg atc gta cga aac agt tgg 816Tyr Ser Asn Ala Gln Gly Val Asp Tyr
Trp Ile Val Arg Asn Ser Trp 260 265 270 gat acc aat tgg ggt gat aat
ggt tac ggt tat ttt gct gcc aac atc 864Asp Thr Asn Trp Gly Asp Asn
Gly Tyr Gly Tyr Phe Ala Ala Asn Ile 275 280 285 gat tta atg atg att
gaa gaa tat cca tac gtt gtc att ttg 906Asp Leu Met Met Ile Glu Glu
Tyr Pro Tyr Val Val Ile Leu 290 295 300 87302PRTDermatophagoides
pteronyssinus 87Arg Pro Ser Ser Ile Lys Thr Phe Glu Glu Tyr Lys Lys
Ala Phe Asn 1 5 10 15 Lys Ser Tyr Ala Thr Phe Glu Asp Glu Glu Ala
Ala Arg Lys Asn Phe 20 25 30 Leu Glu Ser Val Lys Tyr Val Gln Ser
Asn Gly Gly Ala Ile Asn His 35 40 45 Leu Ser Asp Leu Ser Leu Asp
Glu Phe Lys Asn Arg Phe Leu Met Ser 50 55 60 Ala Glu Ala Phe Glu
His Leu Lys Thr Gln Phe Asp Leu Asn Ala Glu 65 70 75 80 Thr Asn Ala
Cys Ser Ile Asn Gly Asn Ala Pro Ala Glu Ile Asp Leu 85 90 95 Arg
Gln Met Arg Thr Val Thr Pro Ile Arg Met Gln Gly Gly Cys Gly 100 105
110 Ser Cys Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr Leu
115 120 125 Ala Tyr Arg Asn Gln Gly Leu Asp Leu Ala Glu Gln Glu Leu
Val Asp 130 135 140 Cys Ala Ser Gln His Gly Cys His Gly Asp Thr Ile
Pro Arg Gly Ile 145 150 155 160 Glu Tyr Ile Gln His Asn Gly Val Val
Gln Glu Ser Tyr Tyr Arg Tyr 165 170 175 Val Ala Arg Glu Gln Ser Cys
Arg Arg Pro Asn Ala Gln Arg Phe Gly 180 185 190 Ile Ser Asn Tyr Cys
Gln Ile Tyr Pro Pro Asn Ala Asn Lys Ile Arg 195 200 205 Glu Ala Leu
Ala Gln Thr His Ser Ala Ile Ala Val Ile Ile Gly Ile 210 215 220 Lys
Asp Leu Asp Ala Phe Arg His Tyr Asp Gly Arg Thr Ile Ile Gln 225 230
235 240 Arg Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val
Gly 245 250 255 Tyr Ser Asn Ala Gln Gly Val Asp Tyr Trp Ile Val Arg
Asn Ser Trp 260 265 270 Asp Thr Asn Trp Gly Asp Asn Gly Tyr Gly Tyr
Phe Ala Ala Asn Ile 275 280 285 Asp Leu Met Met Ile Glu Glu Tyr Pro
Tyr Val Val Ile Leu 290 295 300 88906DNADermatophagoides
pteronyssinus 88caaaatgaca acgtatggat attcttcaat catcattaaa
tcgatgttgg cagcaaaata 60accgtaacca ttatcacccc aattggtatc ccaactgttt
cgtacgatcc aataatcgac 120accttgtgcg ttactgtaac caacaatgtt
gacagcgtga tagtttggtt ggtaaccatt 180atcgcgttga atgattgttc
ggccatcata atgacggaat gcgtctaaat ctttgatgcc 240aataatgacg
gcaatagcgc tgtgggtttg agccaaagct tcacgaattt tgttcgcatt
300tggtgggtaa atttggcaat agtttgagat accgaatctt tgtgcatttg
gtcttctgca 360tgattgttct cgtgcaacgt atcgatagta gctttcttgg
acgacaccat tatgttggat 420gtattcaata ccacgtggaa tggtatcacc
atgacaaccg tgttgggaag cacaatcgac 480taattcttgt tcagcaagat
ccaaaccttg attacggtaa gccaaataag ctgattcagt 540tgcggcaaca
ccagagaaag cccaacatga accacagcct ccttgcatac gaatgggagt
600gacagttcgc atttgtcgca aatcgatttc agctggagca tttccattga
tactgcaggc 660gttagtttca gcattcaaat cgaattgagt tttgaggtgt
tcaaaagctt ctgcactcat 720caaaaatcgg tttttgaatt catccaacga
caaatcggac aaatggttga tggcacctcc 780atttgattga acatatttta
ctgattccaa aaagttttta cgggcagctt cttcatcttc 840gaaggtagca
taacttttgt tgaaggcttt tttgtattct tcaaaagttt tgatggaaga 900tggacg
9068932DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 89gctgtggttc atcttgggct ttctctggtg tt
329032DNAArtificial SequenceDescription of Artificial Sequence
Synthetic Primer 90ctccttgcat acggattgga gtgacagttc gc
3291909DNADermatophagoides farinaeCDS(1)..(909) 91aga cca gct tca
atc aaa act ttt gaa gaa ttc aaa aaa gcc ttc aac 48Arg Pro Ala Ser
Ile Lys Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn1 5 10 15 aaa aac
tat gcc acc gtt gaa gag gaa gaa gtt gcc cgt aaa aac ttt 96Lys Asn
Tyr Ala Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30
ttg gaa tca ttg aaa tat gtt gaa gct aac aaa ggt gcc atc aac cat
144Leu Glu Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His
35 40 45 ttg tcc gat ttg tca ttg gat gaa ttc aaa aac cgt tat ttg
atg agt 192Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu
Met Ser 50 55 60 gct gaa gct ttt gaa caa ctc aaa act caa ttc gat
ttg aat gcc gaa 240Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp
Leu Asn Ala Glu65 70 75 80aca agc gct tgc cgt atc aat tcg gtt aac
gtt cca tcg gaa ttg gat 288Thr Ser Ala Cys Arg Ile Asn Ser Val Asn
Val Pro Ser Glu Leu Asp 85 90 95 tta cga tca ctg cga act gtc act
cca atc cgt atg caa gga ggc tgt 336Leu Arg Ser Leu Arg Thr Val Thr
Pro Ile Arg Met Gln Gly Gly Cys 100 105 110 ggt tca tct tgg gct ttc
tct ggt gtc gcc gca act gaa tca gct tat 384Gly Ser Ser Trp Ala Phe
Ser Gly Val Ala Ala Thr Glu Ser Ala Tyr 115 120 125 ttg gcc tac cgt
aac acg tct ttg gat ctt tct gaa cag gaa ctc gtc 432Leu Ala Tyr Arg
Asn Thr Ser Leu Asp Leu Ser Glu Gln Glu Leu Val 130 135 140 gat tgc
gca tct caa cac gga tgt cac ggc gat aca ata cca aga ggc 480Asp Cys
Ala Ser Gln His Gly Cys His Gly Asp Thr Ile Pro Arg Gly145 150 155
160atc gaa tac atc caa caa aat ggt gtc gtt gaa gaa aga agc tat cca
528Ile Glu Tyr Ile Gln Gln Asn Gly Val Val Glu Glu Arg Ser Tyr Pro
165 170 175 tac gtt gca aga gaa caa aga tgc aga aga cca aat tcg caa
cat tac 576Tyr Val Ala Arg Glu Gln Arg Cys Arg Arg Pro Asn Ser Gln
His Tyr 180 185 190 ggt atc tca aac tac tgc caa att tat cca cca gat
gtg aaa caa atc 624Gly Ile Ser Asn Tyr Cys Gln Ile Tyr Pro Pro Asp
Val Lys Gln Ile 195 200 205 cgt gaa gct ttg act caa aca cac aca gct
att gcc gtc att att ggc 672Arg Glu Ala Leu Thr Gln Thr His Thr Ala
Ile Ala Val Ile Ile Gly 210 215 220 att aaa gat ttg aga gct ttt caa
cat tat gat gga cga aca atc att 720Ile Lys Asp Leu Arg Ala Phe Gln
His Tyr Asp Gly Arg Thr Ile Ile225 230 235 240caa cat gac aat ggt
tat caa cca aac tat cat gcc gtc aac att gtc 768Gln His Asp Asn Gly
Tyr Gln Pro Asn Tyr His Ala Val Asn Ile Val 245 250 255 ggt tac gga
agt aca caa ggc gtc gat tat tgg atc gta cga aac agt 816Gly Tyr Gly
Ser Thr Gln Gly Val Asp Tyr Trp Ile Val Arg Asn Ser 260 265 270 tgg
gat act acc tgg ggt gat agc gga tac gga tat ttc caa gcc gga 864Trp
Asp Thr Thr Trp Gly Asp Ser Gly Tyr Gly Tyr Phe Gln Ala Gly 275 280
285 aac aac ctc atg atg atc gaa caa tat cca tat gtt gta atc atg
909Asn Asn Leu Met Met Ile Glu Gln Tyr Pro Tyr Val Val Ile Met 290
295 300 92303PRTDermatophagoides farinae 92Arg Pro Ala Ser Ile Lys
Thr Phe Glu Glu Phe Lys Lys Ala Phe Asn 1 5 10 15 Lys Asn Tyr Ala
Thr Val Glu Glu Glu Glu Val Ala Arg Lys Asn Phe 20 25 30 Leu Glu
Ser Leu Lys Tyr Val Glu Ala Asn Lys Gly Ala Ile Asn His 35 40 45
Leu Ser Asp Leu Ser Leu Asp Glu Phe Lys Asn Arg Tyr Leu Met Ser 50
55 60 Ala Glu Ala Phe Glu Gln Leu Lys Thr Gln Phe Asp Leu Asn Ala
Glu 65 70 75 80 Thr Ser Ala Cys Arg Ile Asn Ser Val Asn Val Pro Ser
Glu Leu Asp 85 90 95 Leu Arg Ser Leu Arg Thr Val Thr Pro Ile Arg
Met Gln Gly Gly Cys 100
105 110 Gly Ser Ser Trp Ala Phe Ser Gly Val Ala Ala Thr Glu Ser Ala
Tyr 115 120 125 Leu Ala Tyr Arg Asn Thr Ser Leu Asp Leu Ser Glu Gln
Glu Leu Val 130 135 140 Asp Cys Ala Ser Gln His Gly Cys His Gly Asp
Thr Ile Pro Arg Gly 145 150 155 160 Ile Glu Tyr Ile Gln Gln Asn Gly
Val Val Glu Glu Arg Ser Tyr Pro 165 170 175 Tyr Val Ala Arg Glu Gln
Arg Cys Arg Arg Pro Asn Ser Gln His Tyr 180 185 190 Gly Ile Ser Asn
Tyr Cys Gln Ile Tyr Pro Pro Asp Val Lys Gln Ile 195 200 205 Arg Glu
Ala Leu Thr Gln Thr His Thr Ala Ile Ala Val Ile Ile Gly 210 215 220
Ile Lys Asp Leu Arg Ala Phe Gln His Tyr Asp Gly Arg Thr Ile Ile 225
230 235 240 Gln His Asp Asn Gly Tyr Gln Pro Asn Tyr His Ala Val Asn
Ile Val 245 250 255 Gly Tyr Gly Ser Thr Gln Gly Val Asp Tyr Trp Ile
Val Arg Asn Ser 260 265 270 Trp Asp Thr Thr Trp Gly Asp Ser Gly Tyr
Gly Tyr Phe Gln Ala Gly 275 280 285 Asn Asn Leu Met Met Ile Glu Gln
Tyr Pro Tyr Val Val Ile Met 290 295 300 93909DNADermatophagoides
farinae 93catgattaca acatatggat attgttcgat catcatgagg ttgtttccgg
cttggaaata 60tccgtatccg ctatcacccc aggtagtatc ccaactgttt cgtacgatcc
aataatcgac 120gccttgtgta cttccgtaac cgacaatgtt gacggcatga
tagtttggtt gataaccatt 180gtcatgttga atgattgttc gtccatcata
atgttgaaaa gctctcaaat ctttaatgcc 240aataatgacg gcaatagctg
tgtgtgtttg agtcaaagct tcacggattt gtttcacatc 300tggtggataa
atttggcagt agtttgagat accgtaatgt tgcgaatttg gtcttctgca
360tctttgttct cttgcaacgt atggatagct tctttcttca acgacaccat
tttgttggat 420gtattcgatg cctcttggta ttgtatcgcc gtgacatccg
tgttgagatg cgcaatcgac 480gagttcctgt tcagaaagat ccaaagacgt
gttacggtag gccaaataag ctgattcagt 540tgcggcgaca ccagagaaag
cccaagatga accacagcct ccttgcatac ggattggagt 600gacagttcgc
agtgatcgta aatccaattc cgatggaacg ttaaccgaat tgatacggca
660agcgcttgtt tcggcattca aatcgaattg agttttgagt tgttcaaaag
cttcagcact 720catcaaataa cggtttttga attcatccaa tgacaaatcg
gacaaatggt tgatggcacc 780tttgttagct tcaacatatt tcaatgattc
caaaaagttt ttacgggcaa cttcttcctc 840ttcaacggtg gcatagtttt
tgttgaaggc ttttttgaat tcttcaaaag ttttgattga 900agctggtct 909
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