U.S. patent application number 13/511631 was filed with the patent office on 2012-11-29 for herbicide tolerant soybean plants and methods for identifying same.
This patent application is currently assigned to M.S. TECHNOLOGIES LLC. Invention is credited to Marc De Beuckeleer, Mark Alan Eby, William H. Eby, Jean-Marc Ferrulo, Veerle Habex, Leslie James Lettow, Justin Thomas Mason, Steven Verhaeghe, Gunter Welz.
Application Number | 20120304331 13/511631 |
Document ID | / |
Family ID | 44060419 |
Filed Date | 2012-11-29 |
United States Patent
Application |
20120304331 |
Kind Code |
A1 |
Mason; Justin Thomas ; et
al. |
November 29, 2012 |
HERBICIDE TOLERANT SOYBEAN PLANTS AND METHODS FOR IDENTIFYING
SAME
Abstract
The invention provides specific transgenic soybean plants, plant
material and seeds, characterized in that these products harbor a
stack of specific transformation events at specific locations in
the soybean genome. Tools are also provided which allow rapid and
unequivocal identification of these events in biological
samples.
Inventors: |
Mason; Justin Thomas;
(Granger, IA) ; Lettow; Leslie James; (Guthrie
Center, IA) ; Eby; Mark Alan; (Adel, IA) ;
Eby; William H.; (Panora, IA) ; Welz; Gunter;
(Wolfenbuttel, DE) ; Verhaeghe; Steven;
(Grammene-Deinze, BE) ; De Beuckeleer; Marc;
(Zwijnaarde, BE) ; Habex; Veerle; (Gullegem,
BE) ; Ferrulo; Jean-Marc; (Soucy, FR) |
Assignee: |
M.S. TECHNOLOGIES LLC
West Point
IA
BAYER BIOSCIENCE N.V.
Gent
|
Family ID: |
44060419 |
Appl. No.: |
13/511631 |
Filed: |
November 23, 2010 |
PCT Filed: |
November 23, 2010 |
PCT NO: |
PCT/US10/57886 |
371 Date: |
August 9, 2012 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
|
|
61367251 |
Jul 23, 2010 |
|
|
|
61263707 |
Nov 23, 2009 |
|
|
|
Current U.S.
Class: |
800/260 ;
435/415; 435/6.11; 435/6.12; 536/23.6; 800/300 |
Current CPC
Class: |
C07H 21/04 20130101;
C12Q 1/6895 20130101; C12N 15/8274 20130101; A01H 5/10 20130101;
C12N 15/8275 20130101 |
Class at
Publication: |
800/260 ;
435/6.11; 800/300; 435/415; 536/23.6; 435/6.12 |
International
Class: |
C12Q 1/68 20060101
C12Q001/68; C12N 15/29 20060101 C12N015/29; A01H 5/10 20060101
A01H005/10; A01H 1/02 20060101 A01H001/02; A01H 5/00 20060101
A01H005/00; C12N 5/10 20060101 C12N005/10 |
Foreign Application Data
Date |
Code |
Application Number |
Nov 23, 2009 |
EP |
09014565.7 |
Claims
1. A method for identifying the simultaneous presence of elite
events EE-GM3 and EE-GM1 in biological samples, confirming seed
purity in seed samples, or screening seeds for the presence of
elite events EE-GM3 and EE-GM1 in samples in seed lots, said method
comprises detecting an EE-GM3 specific region with a specific
primer or probe which specifically recognizes the 5' or 3' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM3 and detecting an EE-GM1 specific region with a specific
primer or probe which specifically recognizes the 5' or 3' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM1 and identifying the presence or absence of said events in
said samples.
2. The method of claim 1, said method comprising amplifying two DNA
fragments of between 50 and 1000 bp from a nucleic acid present in
said biological samples using a first polymerase chain reaction
with at least two primers, one of said primers recognizing the 5'
flanking region of foreign DNA comprising herbicide tolerance genes
in EE-GM3, said 5' flanking region comprising the nucleotide
sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 1451 or the
3' flanking region of foreign DNA comprising herbicide tolerance
genes in EE-GM3, said 3' flanking region comprising the nucleotide
sequence of the complement of SEQ ID No 3 from nucleotide 241 to
nucleotide 1408, the other primer of said primers recognizing a
sequence within the foreign DNA of EE-GM3 comprising the nucleotide
sequence of the complement of SEQ ID No. 2 from nucleotide 1452 to
nucleotide 1843 or the nucleotide sequence of SEQ ID No 3 from
nucleotide 1 to nucleotide 240 or the other primer of said primers
recognizing a sequence within the foreign DNA of EE-GM3 comprising
the nucleotide sequence of SEQ ID No. 1 or its complement, or
comprising the nucleotide sequence of SEQ ID No. 20 from nucleotide
position 1452 to nucleotide position 16638 or its complement, and
using a second polymerase chain reaction with at least two primers,
one of said primers recognizing the 5' flanking region of foreign
DNA comprising herbicide tolerance genes in EE-GM1, said 5'
flanking region comprising the nucleotide sequence of SEQ ID No 12
from nucleotide 1 to nucleotide 209 or the 3' flanking region of
foreign DNA comprising herbicide tolerance genes in EE-GM1, said 3'
flanking region comprising the nucleotide sequence of the
complement of SEQ ID No 13 from nucleotide 569 to nucleotide 1000,
the other primer of said primers recognizing a sequence within the
foreign DNA of EE-GM1 comprising the nucleotide sequence of the
complement of SEQ ID No. 12 from nucleotide 210 to nucleotide 720
or the nucleotide sequence of SEQ ID No 13 from nucleotide 1 to
nucleotide 568 or the other primer of said primers recognizing a
sequence within the foreign DNA of EE-GM1 comprising the nucleotide
sequence of SEQ ID No.: 11 or its complement, whereby said first
and second polymerase reaction may be sequential or
simultaneous.
3. The method of claim 2, (a) wherein said primer recognizing the
5' flanking region of EE-GM3 comprises a nucleotide sequence of 17
to 200 consecutive nucleotides selected from the nucleotide
sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 1451 or
said primer recognizing the 3' flanking region of EE-GM3 comprises
a nucleotide sequence of 17 to 200 consecutive nucleotides selected
from the nucleotide sequence of the complement of SEQ ID No 3 from
nucleotide 241 to nucleotide 1408, and said primer recognizing a
sequence within the foreign DNA of EE-GM3 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 2 from nucleotide 1452 to nucleotide
1843 or the nucleotide sequence of SEQ ID No 3 from nucleotide 1 to
nucleotide 240 or the nucleotide sequence of SEQ ID No. 1 or its
complement, or the nucleotide sequence of SEQ ID No. 20 from
nucleotide position 1452 to nucleotide position 16638 or its
complement, and wherein said primer recognizing the 5' flanking
region of EE-GM1 comprises a nucleotide sequence of 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 12 from nucleotide 1 to nucleotide 209 or said primer
recognizing the 3' flanking region of EE-GM3 comprises a nucleotide
sequence of 17 to 200 consecutive nucleotides selected from the
nucleotide sequence of the complement of SEQ ID No 13 from
nucleotide 569 to nucleotide 1000, and said primer recognizing a
sequence within the foreign DNA of EE-GM1 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 12 from nucleotide 210 to nucleotide
720 or the nucleotide sequence of SEQ ID No 13 from nucleotide 1 to
nucleotide 568 or the nucleotide sequence of SEQ ID No. 11 or its
complement; or (b) wherein said primer recognizing the 5' flanking
region of EE-GM3 comprises at its extreme 3' end a nucleotide
sequence of at least 17 consecutive nucleotides selected from the
nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide
1451 or said primer recognizing the 3' flanking region of EE-GM3
comprises at its extreme 3' end a nucleotide sequence of at least
17 consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No 3 from nucleotide 241 to nucleotide
1408, and said primer recognizing a sequence within the foreign DNA
of EE-GM3 comprises at its 3' end at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No. 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240 or the nucleotide sequence of SEQ ID No 1 or its complement, or
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
1452 to nucleotide position 16638 or its complement, and wherein
said primer recognizing the 5' flanking region of EE-GM1 comprises
at its extreme 3' end a nucleotide sequence of at least 17
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 12 from nucleotide 1 to nucleotide 209 or said primer
recognizing the 3' flanking region of EE-GM1 comprises at its
extreme 3' end a nucleotide sequence of at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 13 from nucleotide 569 to nucleotide 1000, and said
primer recognizing a sequence within the foreign DNA of EE-GM1
comprises at its 3' end at least 17 consecutive nucleotides
selected from the nucleotide sequence of the complement of SEQ ID
No. 12 from nucleotide 210 to nucleotide 720 or the nucleotide
sequence of SEQ ID No 13 from nucleotide 1 to nucleotide 568 or the
nucleotide sequence of SEQ ID No 11 or its complement.
4. (canceled)
5. The method of claim 3, wherein said EE-GM3 specific primers
comprise the sequence of SEQ ID No. 5 and SEQ ID No. 4,
respectively, or the sequence of SEQ ID No 5 and SEQ ID No. 7,
respectively, and said EE-GM1 specific primers comprise the
sequence of SEQ ID No. 16 and SEQ ID No. 17, respectively.
6. The method of claim 5, which method comprises amplifying a
EE-GM3 specific fragment of about 263 or about 706 bp using the
EE-GM3 PCR Identification Protocol and a EE-GM1 specific fragment
of about 183 bp.
7. A kit for identifying the simultaneous presence of elite event
EE-GM3 and elite event EE-GM1 in biological samples, said kit
comprising one primer recognizing the 5' flanking region of foreign
DNA comprising herbicide tolerance genes in EE-GM3, said 5'
flanking region comprising the nucleotide sequence of SEQ ID No 2
from nucleotide 1 to nucleotide 1451 or one primer recognizing the
3' flanking region of foreign DNA comprising herbicide tolerance
genes in EE-GM3, said 3' flanking region comprising the nucleotide
sequence of the complement of SEQ ID No 3 from nucleotide 241 to
nucleotide 1408, and one primer recognizing a sequence within the
foreign DNA comprising herbicide tolerance genes in EE-GM3, said
foreign DNA comprising the nucleotide sequence of the complement of
SEQ ID No. 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240 or the nucleotide sequence of SEQ ID No 1 or its complement, or
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
1452 to nucleotide position 16638 or its complement, and wherein
said kit further comprises one primer recognizing the 5' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM1, said 5' flanking region comprising the nucleotide sequence
of SEQ ID No 12 from nucleotide 1 to nucleotide 209 or one primer
recognizing the 3' flanking region of foreign DNA comprising
herbicide tolerance genes in EE-GM1, said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No
13 from nucleotide 569 to nucleotide 1000, and one primer
recognizing a sequence within the foreign DNA comprising herbicide
tolerance genes in EE-GM1, said foreign DNA comprising the
nucleotide sequence of the complement of SEQ ID No. 12 from
nucleotide 210 to nucleotide 720 or the nucleotide sequence of SEQ
ID No 13 from nucleotide 1 to nucleotide 568 or the nucleotide
sequence of SEQ ID No 11 or its complement.
8. The kit of claim 7, (a) wherein said primer recognizing said 5'
flanking region of EE-GM3 comprises a nucleotide sequence of 17 to
200 consecutive nucleotides selected from the nucleotide sequence
of SEQ ID No 2 from nucleotide 1 to nucleotide 1451 or said primer
recognizing the 3' flanking region of EE-GM3 comprises a nucleotide
sequence of 17 to 200 consecutive nucleotides selected from the
nucleotide sequence of the complement of SEQ ID No 3 from
nucleotide 241 to nucleotide 1408, and said primer recognizing a
sequence within the foreign DNA of EE-GM3 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 2 from nucleotide 1452 to nucleotide
1843 or the nucleotide sequence of SEQ ID No 3 from nucleotide 1 to
nucleotide 240 or the nucleotide sequence of SEQ ID No 1 or its
complement or the nucleotide sequence of SEQ ID No. 20 from
nucleotide position 1452 to nucleotide position 16638 or its
complement, and wherein said primer recognizing said 5' flanking
region of EE-GM1 comprises a nucleotide sequence of 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 12 from nucleotide 1 to nucleotide 209 or said primer
recognizing the 3' flanking region of EE-GM1 comprises a nucleotide
sequence of 17 to 200 consecutive nucleotides selected from the
nucleotide sequence of the complement of SEQ ID No 13 from
nucleotide 569 to nucleotide 1000, and said primer recognizing a
sequence within the foreign DNA of EE-GM1 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 12 from nucleotide 210 to nucleotide
720 or the nucleotide sequence of SEQ ID No 13 from nucleotide 1 to
nucleotide 568 or the nucleotide sequence of SEQ ID No 11 or its
complement; or (b) wherein said primer recognizing said 5' flanking
region of EE-GM3 comprises at its extreme 3' end a nucleotide
sequence of at least 17 consecutive nucleotides selected from the
nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide
1451 or said primer recognizing said 3' flanking region of EE-GM3
comprises at its extreme 3' end a nucleotide sequence of at least
17 consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No 3 from nucleotide 241 to nucleotide
1408, and said primer recognizing a sequence within said foreign
DNA of EE-GM3 comprises at its 3' end at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No. 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240 or the nucleotide sequence of SEQ ID No 1 or its complement, or
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
1452 to nucleotide position 16638 or its complement, and wherein,
said primer recognizing said 5' flanking region of EE-GM1 comprises
at its extreme 3' end a nucleotide sequence of at least 17
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 12 from nucleotide 1 to nucleotide 209 or said primer
recognizing said 3' flanking region of EE-GM1 comprises at its
extreme 3' end a nucleotide sequence of at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 13 from nucleotide 569 to nucleotide 1000, and said
primer recognizing a sequence within said foreign DNA of EE-GM1
comprises at its 3' end at least 17 consecutive nucleotides
selected from the nucleotide sequence of the complement of SEQ ID
No. 12 from nucleotide 210 to nucleotide 720 or the nucleotide
sequence of SEQ ID No 13 from nucleotide 1 to nucleotide 568 or the
nucleotide sequence of SEQ ID No 11 or its complement; or (c)
comprising a primer comprising the sequence of SEQ ID No. 4 and a
primer comprising the sequence of SEQ ID No. 5 or comprising a
primer comprising the sequence of SEQ ID No. 5 and a primer
comprising the sequence of SEQ ID No. 7 and further comprising a
primer comprising the sequence of SEQ ID No. 16 and a primer
comprising the sequence of SEQ ID No. 17.
9. (canceled)
10. (canceled)
11. A pair of primers, said first primer comprising a sequence
which, under optimized detection conditions specifically recognizes
a sequence within the 5' or 3' flanking region of foreign DNA
comprising herbicide tolerance genes in EE-GM3, said 5' flanking
region comprising the nucleotide sequence of SEQ ID No 2 from
nucleotide 1 to nucleotide 1451 and said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No 3
from nucleotide 241 to nucleotide 1408, and said second primer
comprising a sequence which, under optimized detection conditions
specifically recognizes a sequence within the 5' or 3' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM1, said 5' flanking region comprising the nucleotide sequence
of SEQ ID No 12 from nucleotide 1 to nucleotide 209 and said 3'
flanking region comprising the nucleotide sequence of the
complement of SEQ ID No 13 from nucleotide 569 to nucleotide
1000.
12. The pair of primers of claim 11, (a) wherein said first primer
comprises a nucleotide sequence of 17 to 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 2
from nucleotide 1 to nucleotide 1451 or a nucleotide sequence of 17
to 200 consecutive nucleotides selected from the nucleotide
sequence of the complement of SEQ ID No 3 from nucleotide 241 to
nucleotide 1408 and wherein said second primer comprises a
nucleotide sequence of 17 to 200 consecutive nucleotides selected
from the nucleotide sequence of SEQ ID No 12 from nucleotide 1 to
nucleotide 209 or a nucleotide sequence of 17 to 200 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 13 from nucleotide 569 to nucleotide 1000; or (b)
wherein said first primer comprises at its extreme 3' end a
nucleotide sequence of at least 17 consecutive nucleotides selected
from the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to
nucleotide 1451 or a nucleotide sequence of at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 3 from nucleotide 241 to nucleotide 1408 and wherein
said second primer comprises at its extreme 3' end a nucleotide
sequence of at least 17 consecutive nucleotides selected from the
nucleotide sequence of SEQ ID No 12 from nucleotide 1 to nucleotide
209 or a nucleotide sequence of at least 17 consecutive nucleotides
selected from the nucleotide sequence of the complement of SEQ ID
No 13 from nucleotide 569 to nucleotide 1000.
13. (canceled)
14. A set of primers, (a) wherein a first primer comprises at its
extreme 3' end the sequence of SEQ ID No. 5 and a second primer
comprises at its extreme 3' end the sequence of SEQ ID No. 16; or
(b) wherein a first primer comprises at its extreme 3' end the
sequence of SEQ ID No. 5; a second primer comprises at its extreme
3' end the sequence of SEQ ID No. 4; a third primer comprises at
its extreme 3' end the sequence of SEQ ID No. 16; and a fourth
primer comprises at its extreme 3' end the sequence of SEQ ID No.
17.
15. (canceled)
16. The method of claim 1, which method comprises hybridizing a
nucleic acid of biological samples with a first specific probe for
EE-GM3 and with a second specific probe for EE-GM1.
17. The method of claim 16, (a) wherein the sequence of said first
specific probe has at least 80% sequence identity with a sequence
comprising part of the 5' flanking sequence or the 3' flanking
sequence of EE-GM3 and the sequence of the foreign DNA contiguous
therewith and wherein the sequence of said second specific probe
has at least 80% sequence identity with a sequence comprising part
of the 5' flanking sequence or the 3' flanking sequence of EE-GM1
and the sequence of the foreign DNA contiguous therewith; or (b)
wherein the sequence of said first specific probe has at least 80%
sequence identity with SEQ ID No. 2 from nucleotide 1431 to 1472 or
SEQ ID No. 3 from nucleotide 220 to 261, or the complement of said
sequences and wherein the sequence of said second specific probe
has at least 80% sequence identity with SEQ ID No. 12 from
nucleotide 199 to 220 or SEQ ID No. 13 from nucleotide 558 to 579,
or the complement of said sequences.
18. (canceled)
19. A kit for identifying the simultaneous presence of elite event
EE-GM3 and elite event EE-GM1 in biological samples, said kit
comprising the first and second specific probes of claim 22.
20. The kit of claim 19, (a) wherein the sequence of said first
specific probe has at least 80% sequence identity with a sequence
comprising part of the 5' flanking sequence or the 3' flanking
sequence of foreign DNA comprising herbicide tolerance genes in
EE-GM3 and the sequence of the foreign DNA contiguous therewith and
wherein the sequence of said second specific probe has at least 80%
sequence identity with a sequence comprising part of the 5'
flanking sequence or the 3' flanking sequence of foreign DNA
comprising herbicide tolerance genes in EE-GM1 and the sequence of
the foreign DNA contiguous therewith; or (b) wherein the sequence
of said first specific probe comprises a nucleotide sequence having
at least 80% sequence identity with SEQ ID No. 2 from nucleotide
1441 to 1462 or SEQ ID No. 3 from nucleotide 230 to 251, or the
complement of said sequences and wherein the sequence of said
second specific probe has at least 80% sequence identity with SEQ
ID No. 12 from nucleotide 199 to 220 or SEQ ID No. 13 from
nucleotide 558 to 579, or the complement of said sequences.
21. (canceled)
22. A pair of specific probes for the identification of the
simultaneous presence of elite event EE-GM3 and elite event EE-GM1
in biological samples, wherein a first specific probe is capable of
hybridizing specifically to a specific region of EE-GM3 and a
second specific probe is capable of hybridizing specifically to a
specific region of EE-GM1.
23. The pair of probes of claim 22, (a) wherein said first probe
comprises a nucleotide sequence having at least 80% sequence
identity with a sequence comprising part of the 5' flanking
sequence or the 3' flanking sequence of foreign DNA comprising
herbicide tolerance genes in EE-GM3 and the sequence of the foreign
DNA contiguous therewith, or the complement thereof and said second
probe comprises a nucleotide sequence having at least 80% sequence
identity with a sequence comprising part of the 5' flanking
sequence or the 3' flanking sequence of foreign DNA comprising
herbicide tolerance genes in EE-GM1 and the sequence of the foreign
DNA contiguous therewith, or the complement thereof; or (b) wherein
said first probe has at least 80% sequence identity with SEQ ID No.
2 from nucleotide 1441 to 1462 or SEQ ID No. 3 from nucleotide 230
to 251, or the complement of said sequences, and wherein said
second probe has at least 80% sequence identity with SEQ ID No. 12
from nucleotide 199 to 220 or SEQ ID No. 13 from nucleotide 558 to
579, or the complement of said sequences; or (c) wherein said first
probe comprises a nucleotide sequence being essentially similar to
SEQ ID No. 2 from nucleotide 1441 to 1462 or SEQ ID No. 3 from
nucleotide 230 to 251, or the complement of said sequences and said
second probe comprises a nucleotide sequence being essentially
similar to SEQ ID No. 12 from nucleotide 199 to 220 or SEQ ID No.
13 from nucleotide 558 to 579, or the complement of said
sequences.
24. (canceled)
25. (canceled)
26. (canceled)
27. (canceled)
28. A method of detecting the presence of elite events EE-GM3 and
EE-GM1 in biological samples through hybridization with a
substantially complementary labeled nucleic acid probe in which the
probe:target nucleic acid ratio is amplified through recycling of
the target nucleic acid sequence, said method comprising: a)
hybridizing said target nucleic acid sequence to a first nucleic
acid oligonucleotide comprising the nucleotide sequence of SEQ ID
No 2 from nucleotide 1452 to nucleotide 1469 or its complement or
said first nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 3 from nucleotide 223 to nucleotide 240 or
its complement; b) hybridizing said target nucleic acid sequence to
a second nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 2 from nucleotide 1434 to nucleotide 1451 or
its complement or said labeled nucleic acid probe comprising the
nucleotide sequence of SEQ ID No 3 from nucleotide 241 to
nucleotide 258 or its complement, wherein said first and second
oligonucleotide overlap by at least one nucleotide and wherein
either said first or said second oligonucleotide is labeled to be
said labeled nucleic acid probe; c) cleaving only the labeled probe
within the probe:target nucleic acid sequence duplex with an enzyme
which causes selective probe cleavage resulting in duplex
disassociation, leaving the target sequence intact; d) recycling of
the target nucleic acid sequence by repeating steps (a) to (c); and
e) detecting cleaved labeled probe, thereby determining the
presence of said target nucleic acid sequence; and f) hybridizing
said target nucleic acid sequence to a third nucleic acid
oligonucleotide comprising the nucleotide sequence of SEQ ID No 12
from nucleotide 210 to nucleotide 227 or its complement or said
third nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 13 from nucleotide 561 to nucleotide 568 or
its complement; g) hybridizing said target nucleic acid sequence to
a fourth nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 12 from nucleotide 192 to nucleotide 209 or
its complement or said labeled nucleic acid probe comprising the
nucleotide sequence of SEQ ID No 13 from nucleotide 569 to
nucleotide 586 or its complement, wherein said third and fourth
oligonucleotide overlap by at least one nucleotide and wherein
either said third or said fourth oligonucleotide is labeled to be
said labeled nucleic acid probe; h) cleaving only the labeled probe
within the probe:target nucleic acid sequence duplex with an enzyme
which causes selective probe cleavage resulting in duplex
disassociation, leaving the target sequence intact; i) recycling of
the target nucleic acid sequence by repeating steps (f) to (h); and
j) detecting cleaved labeled probe, thereby determining the
presence of said target nucleic acid sequence.
29. A plant, cell, plant part, tissue, seed, or progeny thereof,
comprising, (a) a transgenic soybean plant, or cells, parts,
tissue, seed or progeny thereof, each comprising elite event EE-GM3
and elite event EE-GM1 in its genome, reference seed comprising
said event EE-GM3 having being deposited at the NCIMB under deposit
number NCIMB 41659 and reference seed comprising said event EE-GM1
having being deposited at the NCIMB under deposit number NCIMB
41658, or reference seed comprising elite event EE-GM3 and elite
event EE-GM1 in its genome having been deposited at the ATCC under
deposit number PTA-11041; or (b) a soybean plant, plant part, or
seed, cell or tissue thereof, each comprising elite event EE-GM3
and elite event EE-GM1 in its genome, said soybean plant being
obtained by crossing a soybean plant comprising elite event EE-GM3
obtainable by propagation of and/or breeding with a soybean plant
grown from the seed deposited at the NCIMB under deposit number
NCIMB 41659 with a soybean plant comprising elite event EE-GM1 in
its genome, obtainable by propagation of and/or breeding with a
soybean plant grown from the seed deposited at the NCIMB under
deposit number NCIMB 41658, or said soybean plant being obtainable
by propagation of and/or breeding with a soybean plant grown from
the seed deposited at the ATCC under accession number PTA-11041; or
(c) a soybean seed comprising elite events EE-GM3 and EE-GM1,
reference seed comprising event EE-GM3 having been deposited at the
NCIMB under deposit number NCIMB 41659, reference seed comprising
event EE-GM1 having been deposited at the NCIMB under deposit
number NCIMB 41658, and reference seed comprising events EE-GM3 and
EE-GM1 having been deposited at the ATCC under deposit number
PTA-11041; or (d) a transgenic soybean plant, plant part, cell or
tissue, comprising elite events EE-GM3 and EE-GM1, obtainable from
the seed of (c).
30. The transgenic soybean plant, seed, cells, tissue, parts or
progeny of claim 29, the genomic DNA of which, when analyzed using
the Elite event identification protocol for EE-GM3 with two primers
comprising the nucleotide sequence of SEQ ID 4 and SEQ ID 5
respectively, yields a DNA fragment of about 263 bp and the genomic
DNA of which, when analyzed using the Elite event identification
protocol for EE-GM1 with two primers comprising the nucleotide
sequence of SEQ ID 16 and SEQ ID 17 respectively, yields a DNA
fragment of about 183 bp.
31. (canceled)
32. (canceled)
33. (canceled)
34. A method for producing a soybean plant or seed comprising elite
event EE-GM3 and EE-GM1 comprising crossing a plant according to
claim 29 with another soybean plant, and planting the seed obtained
from said cross.
35. (canceled)
36. A pair of isolated nucleic acid molecules, the first comprising
a nucleotide sequence essentially similar to SEQ ID No. 2 from
nucleotide 1441 to nucleotide 1452 or SEQ ID No. 3 from nucleotide
230 to 251, or the complement of said sequences and the second
comprising a nucleotide sequence essentially similar to SEQ ID No.
12 from nucleotide 199 to nucleotide 220 or SEQ ID No. 13 from
nucleotide 558 to 579, or the complement of said sequences.
37. The pair of isolated nucleic acid molecules of claim 36, the
first comprising a nucleotide sequence essentially similar to SEQ
ID No. 2 from nucleotide 1431 to nucleotide 1462 or SEQ ID No. 3
from nucleotide 220 to 261, or the complement of said sequences and
the second comprising a nucleotide sequence essentially similar to
SEQ ID No. 12 from nucleotide 189 to nucleotide 230 or SEQ ID No.
13 from nucleotide 548 to 589, or the complement of said
sequences
38. A soybean plant, comprising in its genome the DNA molecule of
claim 39 (i) or (ii).
39. A DNA molecule comprising (i) in order the following nucleotide
sequences: a) the nucleotide sequence of SEQ ID No 2 from
nucleotide 1 to 1451; b) the nucleotide sequence of the complement
of the nucleotide sequence of SEQ ID 1 from nucleotide 6760 to
nucleotide 6958; c) the nucleotide sequence of SEQ ID 1 from
nucleotide 6874 to nucleotide 7298; d) the nucleotide sequence of
SEQ ID 1 from nucleotide 7 to nucleotide 7291; e) the nucleotide
sequence of SEQ ID 1 from nucleotide 12 to nucleotide 7265; f) the
nucleotide sequence of SEQ ID 3 from nucleotide 217 to nucleotide
240; g) the nucleotide sequence of SEQ ID No 3 from nucleotide 241
to nucleotide 1408; and further comprising in order the following
sequences: h) the nucleotide sequence of SEQ ID No 12 from
nucleotide 1 to 209; i) the nucleotide sequence of SEQ ID 11 from
nucleotide 340 to nucleotide 3461; j) the nucleotide sequence of
the complement of the nucleotide sequence of SEQ ID 11 from
nucleotide 1 to nucleotide 336; k) the nucleotide sequence of the
complement of the nucleotide sequence of SEQ ID 11 from nucleotide
3462 to nucleotide 4076; l) the nucleotide sequence of SEQ ID 11
from nucleotide 337 to nucleotide 3043; m) the nucleotide sequence
of SEQ ID 13 from nucleotide 559 to nucleotide 568; and n) the
nucleotide sequence of SEQ ID No 13 from nucleotide 569 to
nucleotide 1000; or (ii) soybean genomic DNA comprising elite event
EE-GM3 and EE-GM1.
40. A method for identifying the simultaneous presence of elite
events EE-GM3 and EE-GM2 in biological samples, confirming seed
purity in seed samples, or screening seeds for the presence of
elite events EE-GM3 and EE-GM2 in samples in seed lots, which
method comprises detection of an EE-GM3 specific region with a
specific primer or probe which specifically recognizes the 5' or 3'
flanking region of foreign DNA comprising herbicide tolerance genes
in EE-GM3 and detecting an EE-GM2 specific region with a specific
primer or probe which specifically recognizes the 5' or 3' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM2.
41. The method of claim 40, said method comprising amplifying two
DNA fragments of between 50 and 1000 bp from a nucleic acid present
in said biological samples using a first polymerase chain reaction
with at least two primers, one of said primers recognizing the 5'
flanking region of foreign DNA comprising herbicide tolerance genes
in EE-GM3, said 5' flanking region comprising the nucleotide
sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 1451 or the
3' flanking region of foreign DNA comprising herbicide tolerance
genes in EE-GM3, said 3' flanking region comprising the nucleotide
sequence of the complement of SEQ ID No 3 from nucleotide 241 to
nucleotide 1408, the other primer of said primers recognizing a
sequence within the foreign DNA of EE-GM3 comprising the nucleotide
sequence of the complement of SEQ ID No. 2 from nucleotide 1452 to
nucleotide 1843 or the nucleotide sequence of SEQ ID No 3 from
nucleotide 1 to nucleotide 240 or the other primer of said primers
recognizing a sequence within the foreign DNA of EE-GM3 comprising
the nucleotide sequence of SEQ ID No. 1 or its complement, or
comprising the nucleotide sequence of SEQ ID No. 20 from nucleotide
position 1452 to nucleotide position 16638 or its complement, and
using a second polymerase chain reaction with at least two primers,
one of said primers recognizing the 5' flanking region of foreign
DNA comprising herbicide tolerance genes in EE-GM2, said 5'
flanking region comprising the nucleotide sequence of SEQ ID No 14
from nucleotide 1 to nucleotide 311 or the 3' flanking region of
foreign DNA comprising herbicide tolerance genes in EE-GM2, said 3'
flanking region comprising the nucleotide sequence of the
complement of SEQ ID No 15 from nucleotide 508 to nucleotide 1880,
the other primer of said primers recognizing a sequence within the
foreign DNA of EE-GM2 comprising the nucleotide sequence of the
complement of SEQ ID No. 14 from nucleotide 312 to nucleotide 810
or the nucleotide sequence of SEQ ID No 15 from nucleotide 1 to
nucleotide 507 or the other primer of said primers recognizing a
sequence within the foreign DNA of EE-GM2 comprising the nucleotide
sequence of SEQ ID No.: 11 or its complement, whereby said first
and second polymerase reaction may be sequential or
simultaneous.
42. The method of claim 41, (a) wherein said primer recognizing the
5' flanking region of EE-GM3 comprises a nucleotide sequence of 17
to 200 consecutive nucleotides selected from the nucleotide
sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 1451 or
said primer recognizing the 3' flanking region of EE-GM3 comprises
a nucleotide sequence of 17 to 200 consecutive nucleotides selected
from the nucleotide sequence of the complement of SEQ ID No 3 from
nucleotide 241 to nucleotide 1408, and said primer recognizing a
sequence within the foreign DNA of EE-GM3 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 2 from nucleotide 1452 to nucleotide
1843 or the nucleotide sequence of SEQ ID No 3 from nucleotide 1 to
nucleotide 240 or the nucleotide sequence of SEQ ID No. 1 or its
complement, or the nucleotide sequence of SEQ ID No. 20 from
nucleotide position 1452 to nucleotide position 16638 or its
complement, and wherein said primer recognizing the 5' flanking
region of EE-GM2 comprises a nucleotide sequence of 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 14 from nucleotide 1 to nucleotide 311 or said primer
recognizing the 3' flanking region of EE-GM3 comprises a nucleotide
sequence of 17 to 200 consecutive nucleotides selected from the
nucleotide sequence of the complement of SEQ ID No 15 from
nucleotide 508 to nucleotide 1880, and said primer recognizing a
sequence within the foreign DNA of EE-GM2 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 14 from nucleotide 312 to nucleotide
810 or the nucleotide sequence of SEQ ID No 15 from nucleotide 1 to
nucleotide 507 or the nucleotide sequence of SEQ ID No. 11 or its
complement; or (b) wherein said primer recognizing the 5' flanking
region of EE-GM3 comprises at its extreme 3' end a nucleotide
sequence of at least 17 consecutive nucleotides selected from the
nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide
1451 or said primer recognizing the 3' flanking region of EE-GM3
comprises at its extreme 3' end a nucleotide sequence of at least
17 consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No 3 from nucleotide 241 to nucleotide
1408, and said primer recognizing a sequence within the foreign DNA
of EE-GM3 comprises at its 3' end at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No. 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240 or the nucleotide sequence of SEQ ID No 1 or its complement, or
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
1452 to nucleotide position 16638 or its complement, and wherein
said primer recognizing the 5' flanking region of EE-GM2 comprises
at its extreme 3' end a nucleotide sequence of at least 17
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 14 from nucleotide 1 to nucleotide 311 or said primer
recognizing the 3' flanking region of EE-GM2 comprises at its
extreme 3' end a nucleotide sequence of at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 15 from nucleotide 508 to nucleotide 1880, and said
primer recognizing a sequence within the foreign DNA of EE-GM2
comprises at its 3' end at least 17 consecutive nucleotides
selected from the nucleotide sequence of the complement of SEQ ID
No. 14 from nucleotide 312 to nucleotide 810 or the nucleotide
sequence of SEQ ID No 15 from nucleotide 1 to nucleotide 507 or the
nucleotide sequence of SEQ ID No 11 or its complement.
43. (canceled)
44. The method of claim 43, wherein said EE-GM3 specific primers
comprise the sequence of SEQ ID No. 5 and SEQ ID No. 4,
respectively, or the sequence of SEQ ID No 7 and SEQ ID No. 5
respectively, and said EE-GM2 specific primers comprise the
sequence of SEQ ID No. 18 and SEQ ID No. 19 respectively.
45. The method of claim 44, which method comprises amplifying a
EE-GM3 specific fragment of about 263 or 706 bp using the EE-GM3
PCR Identification Protocol and a EE-GM2 specific fragment of about
151 bp.
46. A kit for identifying the simultaneous presence of elite event
EE-GM3 and elite event EE-GM2 in biological samples, said kit
comprising one primer recognizing the 5' flanking region of foreign
DNA comprising herbicide tolerance genes in EE-GM3, said 5'
flanking region comprising the nucleotide sequence of SEQ ID No 2
from nucleotide 1 to nucleotide 1451 or one primer recognizing the
3' flanking region of foreign DNA comprising herbicide tolerance
genes in EE-GM3, said 3' flanking region comprising the nucleotide
sequence of the complement of SEQ ID No 3 from nucleotide 241 to
nucleotide 1408, and one primer recognizing a sequence within the
foreign DNA comprising herbicide tolerance genes in EE-GM3, said
foreign DNA comprising the nucleotide sequence of the complement of
SEQ ID No. 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240 or the nucleotide sequence of SEQ ID No 1 or its complement, or
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
1452 to nucleotide position 16638 or its complement, and wherein
said kit further comprises one primer recognizing the 5' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM2, said 5' flanking region comprising the nucleotide sequence
of SEQ ID No 14 from nucleotide 1 to nucleotide 311 or one primer
recognizing the 3' flanking region of foreign DNA comprising
herbicide tolerance genes in EE-GM2, said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No
15 from nucleotide 508 to nucleotide 1880, and one primer
recognizing a sequence within the foreign DNA comprising herbicide
tolerance genes in EE-GM2, said foreign DNA comprising the
nucleotide sequence of the complement of SEQ ID No. 14 from
nucleotide 312 to nucleotide 810 or the nucleotide sequence of SEQ
ID No 15 from nucleotide 1 to nucleotide 507 or the nucleotide
sequence of SEQ ID No 11 or its complement.
47. The kit of claim 46, (a) wherein said primer recognizing said
5' flanking region of EE-GM3 comprises a nucleotide sequence of 17
to 200 consecutive nucleotides selected from the nucleotide
sequence of SEQ ID No 2 from nucleotide 1 to nucleotide 1451 or
said primer recognizing the 3' flanking region of EE-GM3 comprises
a nucleotide sequence of 17 to 200 consecutive nucleotides selected
from the nucleotide sequence of the complement of SEQ ID No 3 from
nucleotide 241 to nucleotide 1408, and said primer recognizing a
sequence within the foreign DNA of EE-GM3 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 2 from nucleotide 1452 to nucleotide
1843 or the nucleotide sequence of SEQ ID No 3 from nucleotide 1 to
nucleotide 240 or the nucleotide sequence of SEQ ID No 1 or its
complement, or the nucleotide sequence of SEQ ID No. 20 from
nucleotide position 1452 to nucleotide position 16638 or its
complement, and wherein said primer recognizing said 5' flanking
region of EE-GM2 comprises a nucleotide sequence of 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 14 from nucleotide 1 to nucleotide 311 or said primer
recognizing the 3' flanking region of EE-GM2 comprises a nucleotide
sequence of 17 to 200 consecutive nucleotides selected from the
nucleotide sequence of the complement of SEQ ID No 15 from
nucleotide 508 to nucleotide 1880, and said primer recognizing a
sequence within the foreign DNA of EE-GM2 comprises 17 to 200
consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No. 14 from nucleotide 312 to nucleotide
810 or the nucleotide sequence of SEQ ID No 15 from nucleotide 1 to
nucleotide 507 or the nucleotide sequence of SEQ ID No 11 or its
complement; or (b) wherein said primer recognizing said 5' flanking
region of EE-GM3 comprises at its extreme 3' end a nucleotide
sequence of at least 17 consecutive nucleotides selected from the
nucleotide sequence of SEQ ID No 2 from nucleotide 1 to nucleotide
1451 or said primer recognizing said 3' flanking region of EE-GM3
comprises at its extreme 3' end a nucleotide sequence of at least
17 consecutive nucleotides selected from the nucleotide sequence of
the complement of SEQ ID No 3 from nucleotide 241 to nucleotide
1408, and said primer recognizing a sequence within said foreign
DNA of EE-GM3 comprises at its 3' end at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No. 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240 or the nucleotide sequence of SEQ ID No 1 or its complement, or
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
1452 to nucleotide position 16638 or its complement, and wherein,
said primer recognizing said 5' flanking region of EE-GM2 comprises
at its extreme 3' end a nucleotide sequence of at least 17
consecutive nucleotides selected from the nucleotide sequence of
SEQ ID No 14 from nucleotide 1 to nucleotide 311 or said primer
recognizing said 3' flanking region of EE-GM2 comprises at its
extreme 3' end a nucleotide sequence of at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 15 from nucleotide 508 to nucleotide 1880, and said
primer recognizing a sequence within said foreign DNA of EE-GM2
comprises at its 3' end at least 17 consecutive nucleotides
selected from the nucleotide sequence of the complement of SEQ ID
No. 14 from nucleotide 312 to nucleotide 810 or the nucleotide
sequence of SEQ ID No 15 from nucleotide 1 to nucleotide 507 or the
nucleotide sequence of SEQ ID No 11 or its complement; or (c)
comprising a primer comprising the sequence of SEQ ID No. 4 and a
primer comprising the sequence of SEQ ID No. 5 or comprising a
primer comprising the sequence of SEQ ID No. 5 and a primer
comprising the sequence of SEQ ID No. 7 and further comprising a
primer comprising the sequence of SEQ ID No. 18 and a primer
comprising the sequence of SEQ ID No. 19.
48. (canceled)
49. (canceled)
50. A pair of primers suitable for use in an EE-GM3 and EE-GM2
specific detection, said first primer comprising a sequence which,
under optimized detection conditions specifically recognizes a
sequence within the 5' or 3' flanking region of foreign DNA
comprising herbicide tolerance genes in EE-GM3, said 5' flanking
region comprising the nucleotide sequence of SEQ ID No 2 from
nucleotide 1 to nucleotide 1451 and said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No 3
from nucleotide 241 to nucleotide 1408 and said second primer
comprising a sequence which, under optimized detection conditions
specifically recognizes a sequence within the 5' or 3' flanking
region of foreign DNA comprising herbicide tolerance genes in
EE-GM2, said 5' flanking region comprising the nucleotide sequence
of SEQ ID No 14 from nucleotide 1 to nucleotide 311 and said 3'
flanking region comprising the nucleotide sequence of the
complement of SEQ ID No 15 from nucleotide 508 to nucleotide
1880.
51. The pair of primers of claim 50, (a) wherein said first primer
comprises a nucleotide sequence of 17 to 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 2
from nucleotide 1 to nucleotide 1451 or a nucleotide sequence of 17
to 200 consecutive nucleotides selected from the nucleotide
sequence of the complement of SEQ ID No 3 from nucleotide 241 to
nucleotide 1408 and wherein said second primer comprises a
nucleotide sequence of 17 to 200 consecutive nucleotides selected
from the nucleotide sequence of SEQ ID No 14 from nucleotide 1 to
nucleotide 311 or a nucleotide sequence of 17 to 200 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 15 from nucleotide 508 to nucleotide 1880; or (b)
wherein said first primer comprises at its extreme 3' end a
nucleotide sequence of at least 17 consecutive nucleotides selected
from the nucleotide sequence of SEQ ID No 2 from nucleotide 1 to
nucleotide 1451 or a nucleotide sequence of at least 17 consecutive
nucleotides selected from the nucleotide sequence of the complement
of SEQ ID No 3 from nucleotide 241 to nucleotide 1408 and wherein
said second primer comprises at its extreme 3' end a nucleotide
sequence of at least 17 consecutive nucleotides selected from the
nucleotide sequence of SEQ ID No 14 from nucleotide 1 to nucleotide
311 or a nucleotide sequence of at least 17 consecutive nucleotides
selected from the nucleotide sequence of the complement of SEQ ID
No 15 from nucleotide 508 to nucleotide 1880.
52. (canceled)
53. A set of primers, (a) wherein a first primer comprises at its
extreme 3' end the sequence of SEQ ID No. 5 and wherein a second
primer comprises at its extreme 3' end the sequence of SEQ ID No.
18; or (b) wherein a first primer comprises at its extreme 3' end
the sequence of SEQ ID No. 5; a second primer comprises at its
extreme 3' end the sequence of SEQ ID No. 4; a third primer
comprises at its extreme 3' end the sequence of SEQ ID No. 18; and
a fourth primer comprises at its extreme 3' end the sequence of SEQ
ID No. 19.
54. (canceled)
55. The method of claim 40, which method comprises hybridizing a
nucleic acid of biological samples with a first specific probe for
EE-GM3 and with a second specific probe for EE-GM2.
56. The method of claim 55, (a) wherein the sequence of said first
specific probe has at least 80% sequence identity with a sequence
comprising part of the 5' flanking sequence or the 3' flanking
sequence of EE-GM3 and the sequence of the foreign DNA contiguous
therewith and wherein the sequence of said second specific probe
has at least 80% sequence identity with a sequence comprising part
of the 5' flanking sequence or the 3' flanking sequence of EE-GM2
and the sequence of the foreign DNA contiguous therewith; or (b)
wherein the sequence of said first specific probe has at least 80%
sequence identity with SEQ ID No. 2 from nucleotide 1431 to 1472 or
SEQ ID No. 3 from nucleotide 220 to 261, or the complement of said
sequences and wherein the sequence of said second specific probe
has at least 80% sequence identity with SEQ ID No. 14 from
nucleotide 301 to 322 or SEQ ID No. 15 from nucleotide 497 to 518,
or the complement of said sequences.
57. (canceled)
58. A kit for identifying the simultaneous presence of elite event
EE-GM3 and elite event EE-GM2 in biological samples, said kit
comprising the first and second specific probe of claim 61, capable
of hybridizing specifically to a specific region of EE-GM3 and a
second specific probe capable of hybridizing specifically to a
specific region of EE-GM2.
59. The kit of claim 58, (a) wherein the sequence of said first
specific probe has at least 80% sequence identity with a sequence
comprising part of the 5' flanking sequence or the 3' flanking
sequence of foreign DNA comprising herbicide tolerance genes in
EE-GM3 and the sequence of the foreign DNA contiguous therewith and
wherein the sequence of said second specific probe has at least 80%
sequence identity with a sequence comprising part of the 5'
flanking sequence or the 3' flanking sequence of foreign DNA
comprising herbicide tolerance genes in EE-GM2 and the sequence of
the foreign DNA contiguous therewith; or (b) wherein the sequence
of said first specific probe comprises a nucleotide sequence having
at least 80% sequence identity with SEQ ID No. 2 from nucleotide
1441 to 1462 or SEQ ID No. 3 from nucleotide 230 to 251, or the
complement of said sequences and wherein the sequence of said
second specific probe has at least 80% sequence identity with SEQ
ID No. 14 from nucleotide 301 to 322 or SEQ ID No. 15 from
nucleotide 497 to 518, or the complement of said sequences.
60. (canceled)
61. A pair of specific probes for the identification of the
simultaneous presence of elite event EE-GM3 and elite event EE-GM2
in biological samples wherein a first specific probe is a capable
of hybridizing specifically to a specific region of EE-GM3 and a
second specific probe capable of hybridizing specifically to a
specific region of EE-GM2.
62. The pair of probes of claim 61, (a) wherein said first probe
comprises a nucleotide sequence having at least 80% sequence
identity with a sequence comprising part of the 5' flanking
sequence or the 3' flanking sequence of foreign DNA comprising
herbicide tolerance genes in EE-GM3 and the sequence of the foreign
DNA contiguous therewith, or the complement thereof, and said
second probe comprises a nucleotide sequence having at least 80%
sequence identity with a sequence comprising part of the 5'
flanking sequence or the 3' flanking sequence of foreign DNA
comprising herbicide tolerance genes in EE-GM2 and the sequence of
the foreign DNA contiguous therewith, or the complement thereof; or
(b) wherein said first probe has at least 80% sequence identity
with SEQ ID No. 2 from nucleotide 1441 to 1462 or SEQ ID No. 3 from
nucleotide 230 to 251, or the complement of said sequences and
wherein said second probe has at least 80% sequence identity with
SEQ ID No. 14 from nucleotide 301 to 322 or SEQ ID No. 15 from
nucleotide 497 to 518, or the complement of said sequences; or (c)
wherein said first probe comprises a nucleotide sequence being
essentially similar to SEQ ID No. 2 from nucleotide 1441 to 1462 or
SEQ ID No. 3 from nucleotide 230 to 251, or the complement of said
sequences, and said second probe comprises a nucleotide sequence
being essentially similar to SEQ ID No. 14 from nucleotide 301 to
322 or SEQ ID No. 15 from nucleotide 497 to 518, or the complement
of said sequences.
63. (canceled)
64. (canceled)
65. (canceled)
66. (canceled)
67. A method of detecting the presence of elite events EE-GM3 and
EE-GM2 in biological samples through hybridization with a
substantially complementary labeled nucleic acid probe in which the
probe:target nucleic acid ratio is amplified through recycling of
the target nucleic acid sequence, said method comprising: a)
hybridizing said target nucleic acid sequence to a first nucleic
acid oligonucleotide comprising the nucleotide sequence of SEQ ID
No 2 from nucleotide 1452 to nucleotide 1469 or its complement or
said first nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 3 from nucleotide 223 to nucleotide 240 or
its complement; b) hybridizing said target nucleic acid sequence to
a second nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 2 from nucleotide 1434 to nucleotide 1451 or
its complement or said labeled nucleic acid probe comprising the
nucleotide sequence of SEQ ID No 3 from nucleotide 241 to
nucleotide 258 or its complement, wherein said first and second
oligonucleotide overlap by at least one nucleotide and wherein
either said first or said second oligonucleotide is labeled to be
said labeled nucleic acid probe; c) cleaving only the labeled probe
within the probe:target nucleic acid sequence duplex with an enzyme
which causes selective probe cleavage resulting in duplex
disassociation, leaving the target sequence intact; d) recycling of
the target nucleic acid sequence by repeating steps (a) to (c); and
e) detecting cleaved labeled probe, thereby determining the
presence of said target nucleic acid sequence, and f) hybridizing
said target nucleic acid sequence to a third nucleic acid
oligonucleotide comprising the nucleotide sequence of SEQ ID No 14
from nucleotide 312 to nucleotide 329 or its complement or said
third nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 15 from nucleotide 490 to nucleotide 507 or
its complement; g) hybridizing said target nucleic acid sequence to
a fourth nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 14 from nucleotide 294 to nucleotide 311 or
its complement or said labeled nucleic acid probe comprising the
nucleotide sequence of SEQ ID No 15 from nucleotide 508 to
nucleotide 525 or its complement, wherein said third and fourth
oligonucleotide overlap by at least one nucleotide and wherein
either said third or said fourth oligonucleotide is labeled to be
said labeled nucleic acid probe; h) cleaving only the labeled probe
within the probe:target nucleic acid sequence duplex with an enzyme
which causes selective probe cleavage resulting in duplex
disassociation, leaving the target sequence intact; i) recycling of
the target nucleic acid sequence by repeating steps (f) to (h); and
j) detecting cleaved labeled probe, thereby determining the
presence of said target nucleic acid sequence.
68. A plant, cell, plant part, tissue, seed, or progeny thereof,
comprising, (a) transgenic soybean plant, or cells, parts, seed or
progeny thereof, each comprising elite event EE-GM3 and elite event
EE-GM2 in its genome, reference seed comprising said event EE-GM3
having being deposited at the NCIMB under deposit number NCIMB
41659 and reference seed comprising said event EE-GM2 having being
deposited at the NCIMB under deposit number NCIMB 41660, or
reference seed comprising elite event EE-GM3 and elite event EE-GM2
in its genome having been deposited at the ATCC under deposit
number PTA-11042; or (b) a soybean plant, or seed, cells or tissues
thereof, each comprising elite event EE-GM3 and elite event EE-GM2
in its genome, said soybean plant being obtained by crossing a
soybean plant comprising elite event EE-GM3 in its genome,
obtainable by propagation of and/or breeding with a soybean plant
grown from the seed deposited at the NCIMB under deposit number
NCIMB 41659 with a soybean plant comprising elite event EE-GM2 in
its genome, obtainable by propagation of and/or breeding with a
soybean plant grown from the seed deposited at the NCIMB under
deposit number NCIMB 41660, or said soybean plant being obtainable
by propagation of and/or breeding with a soybean plant grown from
the seed deposited at the ATCC under accession number PTA-11042; or
(c) a soybean seed comprising elite events EE-GM3 and EE-GM2,
reference seed comprising event EE-GM3 having been deposited at the
NCIMB under deposit number NCIMB 41659, reference seed comprising
event EE-GM2 having been deposited at the NCIMB under deposit
number NCIMB 41660, and reference seed comprising events EE-GM3 and
EE-GM2 having been deposited at the ATCC under deposit number
PTA-11042; or (d) a transgenic soybean plant, cell or tissue,
comprising elite events EE-GM3 and EE-GM2, produced from the seed
of (c); or (e) a soybean plant, cell, tissue or seed, comprising
EE-GM3 and EE-GM1, comprising in the genome of its cells a nucleic
acid sequence with at least 80%, 90%, 95% or 100% sequence identity
to SEQ ID No. 2 from nucleotide 1431 to 1472 and a nucleic acid
sequence with at least 80%, 90%, 95% or 100% sequence identity to
SEQ ID No. 3 from nucleotide 220 to 261, or the complement of said
sequences, and also a nucleic acid sequence with at least 80%. 90%,
95% or 100% sequence identity to SEQ ID No. 12 from nucleotide 199
to 220 and a nucleic acid sequence with at least 80%, 90%, 95% or
100% sequence identity to SEQ ID No. 13 from nucleotide 558 to 579,
or the complement of said sequences; or (f) a soybean plant, cell,
tissue or seed, comprising EE-GM3 and EE-GM2, comprising in the
genome of its cells a nucleic acid sequence with at least 80%, 90%,
95% or 100% sequence identity to SEQ ID No. 2 from nucleotide 1431
to 1472 and a nucleic acid sequence with at least 80%, 90%, 95% or
100% sequence identity to SEQ ID No. 3 from nucleotide 220 to 261,
or the complement of said sequences, and also a nucleic acid
sequence with at least 80%, 90%, 95% or 100% sequence identity to
SEQ ID No. 14 from nucleotide 301 to 322 and a nucleic acid
sequence with at least 80%, 90%, 95% or 100% sequence identity to
SEQ ID No. 15 from nucleotide 497 to 518, or the complement of said
sequences; (g) a soybean plant, plant cell, tissue, or seed,
comprising in their genome a nucleic acid molecule comprising a
nucleotide sequence with at least 97, 98, or at least 99% sequence
identity to the nucleotide sequence of SEQ ID No. 20 from
nucleotide position 1452 to nucleotide position 16638 or the
complement thereof, or a nucleotide sequence with at least 97, 98,
or at least 99% sequence identity to SEQ ID No. 20 or the
complement thereof, and comprising in their genome a nucleic acid
molecule comprising a nucleotide sequence with at least 97, 98, or
at least 99% sequence identity to the nucleotide sequence of EE-GM1
or EE-GM2 or the complement thereof, reference seed comprising
EE-GM1 having been deposited under deposit number NCIMB 41658, and
reference seed comprising EE-GM2 having been deposited under
deposit number NCIMB 41660, such as wherein said nucleotide
sequence of EE-GM1 or EE-GM2 comprises or is the foreign DNA
sequence in SEQ ID No 12 or 13, or the foreign DNA sequence in SEQ
ID No 14 or 15, respectively, or the foreign DNA sequence in the
plant genome between the sequence of SEQ ID No 12 and that of SEQ
ID No 13, or the foreign DNA sequence in the plant genome between
the sequence of SEQ ID No 14 and that of SEQ ID No 15,
respectively; or (h) a soybean plant, plant cell, tissue, or seed,
comprising in their genome a nucleic acid molecule hybridizing to
the nucleotide sequence of SEQ ID No 1 or the complement thereof,
or hybridizing to the nucleotide sequence of SEQ ID No. 20 from
nucleotide position 1452 to nucleotide position 16638 or the
complement thereof, or hybridizing to the nucleotide sequence of
SEQ ID No. 20 or the complement thereof, and comprising in their
genome a nucleic acid molecule hybridizing to the nucleotide
sequence of EE-GM1 or EE-GM2 or the complement thereof, reference
seed comprising EE-GM1 having been deposited under deposit number
NCIMB 41658, and reference seed comprising EE-GM2 having been
deposited under deposit number NCIMB 41660, such as wherein said
nucleotide sequence of EE-GM1 or EE-GM2 comprises or is the foreign
DNA sequence in SEQ ID No 12 or 13, or the foreign DNA sequence in
SEQ ID No 14 or 15, or the foreign DNA sequence in the plant genome
between the sequence of SEQ ID No 12 and that of SEQ ID No 13, or
the foreign DNA sequence in the plant genome between the sequence
of SEQ ID No 14 and that of SEQ ID No 15.
69. The transgenic soybean plant, seed, cells, parts or progeny of
claim 68, the genomic DNA of which, when analyzed using the Elite
event identification protocol for EE-GM3 with two primers
comprising the nucleotide sequence of SEQ ID 4 and SEQ ID 5
respectively, yields a DNA fragment of about 263 bp and the genomic
DNA of which, when analyzed using the Elite event identification
protocol for EE-GM2 with two primers comprising the nucleotide
sequence of SEQ ID 18 and SEQ ID 19 respectively, yields a DNA
fragment of about 151 bp.
70. (canceled)
71. (canceled)
72. (canceled)
73. A method for producing a soybean plant or seed comprising elite
event EE-GM3 and EE-GM2 comprising crossing a plant according to
claim 68 with another soybean plant, and planting the seed obtained
from said cross.
74. (canceled)
75. A pair of isolated nucleic acid molecules, the first comprising
a nucleotide sequence essentially similar to SEQ ID No. 2 from
nucleotide 1441 to nucleotide 1452 or SEQ ID No. 3 from nucleotide
230 to 251, or the complement of said sequences, and the second
comprising a nucleotide sequence essentially similar to SEQ ID No.
14 from nucleotide 301 to nucleotide 322 or SEQ ID No. 15 from
nucleotide 497 to 518, or the complement of said sequences.
76. The pair of isolated nucleic acid molecules of claim 75 the
first comprising a nucleotide sequence essentially similar to SEQ
ID No. 2 from nucleotide 1431 to nucleotide 1462 or SEQ ID No. 3
from nucleotide 220 to 261, or the complement of said sequences,
and the second comprising a nucleotide sequence essentially similar
to SEQ ID No. 14 from nucleotide 301 to nucleotide 322 or SEQ ID
No. 15 from nucleotide 487 to 518, or the complement of said
sequences.
77. A soybean plant, comprising in its genome the DNA molecule of
claim 78 (i) or (ii).
78. A DNA molecule comprising (i) in order the following nucleotide
sequences: a) the nucleotide sequence of SEQ ID No 2 from
nucleotide 1 to 1451; b) the nucleotide sequence of the complement
of the nucleotide sequence of SEQ ID 1 from nucleotide 6760 to
nucleotide 6958; c) the nucleotide sequence of SEQ ID 1 from
nucleotide 6874 to nucleotide 7298; d) the nucleotide sequence of
SEQ ID 1 from nucleotide 7 to nucleotide 7291; e) the nucleotide
sequence of SEQ ID 1 from nucleotide 12 to nucleotide 7265; f) the
nucleotide sequence of SEQ ID 3 from nucleotide 217 to nucleotide
240; and g) the nucleotide sequence of SEQ ID No 3 from nucleotide
241 to nucleotide 1408, and further comprising in order the
following sequences: h) the nucleotide sequence of SEQ ID No 14
from nucleotide 1 to 311; i) the nucleotide sequence of SEQ ID 11
from nucleotide 3458 to nucleotide 3848; j) the nucleotide sequence
of SEQ ID 11 from nucleotide 413 to nucleotide 3457; k) the
nucleotide sequence of SEQ ID No 15 from nucleotide 508 to
nucleotide 1880; or (ii) soybean genomic DNA comprising elite event
EE-GM3 and EE-GM2.
79. (canceled)
80. (canceled)
81. (canceled)
82. (canceled)
Description
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims priority to U.S. Provisional Patent
Application No. 61/367,251, filed Jul. 23, 2010; U.S. Provisional
Patent Application No. 61/263,707, filed Nov. 23, 2009; and
European Patent Application No. EP 09014565.7, filed Nov. 23, 2009,
the disclosures of each of which are hereby incorporated by
reference in their entireties.
FIELD OF THE INVENTION
[0002] This invention relates to transgenic soybean plants, plant
material and seeds, characterized by harboring at least two
specific transformation events, particularly by the presence of at
least two sets of genes encoding proteins that confer herbicide
tolerance, each at a specific location in the soybean genome. The
soybean plants of the invention combine the herbicide tolerance
phenotype with an agronomic performance, genetic stability and
functionality in different genetic backgrounds equivalent to the
non-transformed soybean line in the absence of herbicide(s). This
invention further provides methods and kits for identifying the
presence of plant material comprising specifically transformation
event EE-GM3 and EE-GM2 or EE-GM1 in biological samples.
BACKGROUND OF THE INVENTION
[0003] The phenotypic expression of a transgene in a plant is
determined both by the structure of the gene or genes itself and by
its or their location in the plant genome. At the same time the
presence of the transgenes or "foreign DNA" at different locations
in the genome will influence the overall phenotype of the plant in
different ways. The agronomically or industrially successful
introduction of a commercially interesting trait in a plant by
genetic manipulation can be a lengthy procedure dependent on
different factors. The actual transformation and regeneration of
genetically transformed plants are only the first in a series of
selection steps, which include extensive genetic characterization,
breeding, and evaluation in field trials, eventually leading to the
selection of an elite event.
[0004] The unequivocal identification of an elite event is becoming
increasingly important in view of discussions on Novel Food/Feed,
segregation of GMO and non-GMO products and the identification of
proprietary material. Ideally, such identification method is both
quick and simple, without the need for an extensive laboratory
set-up. Furthermore, the method should provide results that allow
unequivocal determination of the elite event without expert
interpretation, but which hold up under expert scrutiny if
necessary. Specific tools for use in the identification of elite
event EE-GM3 and EE-GM1 or EE-GM2 in biological samples are
described herein.
[0005] In this invention, EE-GM3 has been identified as an elite
event from a population of transgenic soybean plants in the
development of herbicide tolerant soybean (Glycine max) comprising
a gene coding for glyphosate tolerance combined with a gene
conferring tolerance to 4-hydroxy phenylpyruvate dioxygenase (HPPD)
inhibitors, each under control of a plant-expressible promoter.
[0006] EE-GM1 and EE-GM2 have previously been identified as elite
events from a population of transgenic soybean plants in the
development of herbicide tolerant soybean (Glycine max) comprising
a gene coding for glufosinate tolerance under control of a
plant-expressible promoter and are described in WO2006/108674 and
WO2006/108675 (both publications herein incorporated by
reference).
[0007] Soybean plants comprising a herbicide tolerance gene have
been disclosed in the art. However, none of the prior art
disclosures teach or suggest the present invention.
[0008] It is known in the art that getting a commercial herbicide
tolerant elite transformation event in soybean plants with
acceptable agronomic performance, with no yield drag, and providing
sufficient herbicide tolerance, certainly to 3 different classes of
herbicides, is by no means straightforward.
[0009] Indeed, it has been reported that the first soybean event
(event 40-3-2) released on the market with herbicide tolerance, had
a significant yield drag compared to (near-)isogenic lines (Elmore
et al. (2001) Agron. J. 93:408-412).
[0010] Also, Optimum.TM. GAT.TM. soybeans (event 356043) were
developed to combine tolerance to glyphosate with tolerance to ALS
herbicides, but it has been reported that these soybeans were not
meeting the standards for glyphosate tolerance by itself (without
combination with another glyphosate tolerance soybean event (such
as event 40-3-2) (see, e.g.,
www.bloomberg.com/apps/news?pid=newsarchive&sid=ad4L0hH9MKWE)).
SUMMARY OF THE PREFERRED EMBODIMENTS OF THE INVENTION
[0011] The present invention relates to a transgenic soybean plant,
or seed, cells or tissues thereof, comprising, stably integrated
into its genome, an expression cassette which comprises a herbicide
tolerance gene comprising the coding sequence of the 2mEPSPS gene
and another herbicide tolerance gene comprising the coding sequence
of HPPD-PF W336 (both as described in Example 1.1 herein and as
represented in SEQ ID No 1) as well as a second expression cassette
comprising a herbicide tolerance gene comprising the coding
sequence of a phosphinothricin acetyl transferase, as described in
Example 1 herein and as represented in SEQ ID No 11. The transgenic
soybean plant, or seed, cells or tissues thereof are tolerant to
herbicides based on glyphosate, based on glufosinate, and an HPPD
inhibitor herbicide such as isoxaflutole, and, in the absence of
herbicide(s), has an agronomic performance which is substantially
equivalent to the non-transgenic isogenic line. After application
of one or more herbicides to which tolerance is provided, the plant
will have a superior agronomic phenotype compared to a
non-transgenic plant.
[0012] According to the present invention the soybean plant or
seed, cells or tissues thereof comprise elite event EE-GM3 and
EE-GM1 or EE-GM3 and EE-GM2.
[0013] More specifically, the present invention relates to a
transgenic soybean plant, seed, cells or tissues thereof, the
genomic DNA of which is characterized by the fact that, when
analyzed in a PCR Identification Protocol as described herein,
using two primers directed to the 5' or 3' flanking region of
EE-GM3 and the foreign DNA comprising herbicide tolerance genes in
EE-GM-3, respectively, yields a fragment which is specific for
EE-GM3 and further when analyzed in a PCR Identification Protocol
as described herein, using two primers directed to the 5' or 3'
flanking region of EE-GM1 or EE-GM2 and the foreign DNA comprising
glufosinate tolerance genes, respectively, yields a fragment which
is specific for EE-GM1 or EE-GM2. The primers for detection of
EE-GM3 may be directed against the 5' flanking region within SEQ ID
NO: 2 and the foreign DNA comprising herbicide tolerance genes,
respectively. The primers for detection of EE-GM3 may also be
directed against the 3' flanking region within SEQ ID NO: 3 and the
foreign DNA comprising herbicide tolerance genes, respectively,
such as the primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID NO: 5 and SEQ ID NO: 4 or SEQ ID No.:
7 respectively, and yield a DNA fragment of between 100 and 800 bp,
such as a fragment of about 263 bp or about 706 bp. The primers for
detection of EE-GM1 may be directed against the 5' flanking region
within SEQ ID NO: 12 and the foreign DNA comprising herbicide
tolerance genes, respectively. The primers for detection of EE-GM1
may also be directed against the 3' flanking region within SEQ ID
NO: 13 and the foreign DNA comprising herbicide tolerance genes,
respectively, such as the primers comprising or consisting
(essentially) of the nucleotide sequence of SEQ ID NO: 16 and SEQ
ID NO: 17 respectively, and yield a DNA fragment of between 100 and
500 bp, such as a fragment of about 183 bp. The primers for
detection of EE-GM2 may be directed against the 5' flanking region
within SEQ ID NO: 14 and the foreign DNA comprising herbicide
tolerance genes, respectively. The primers for detection of EE-GM2
may also be directed against the 3' flanking region within SEQ ID
NO: 15 and the foreign DNA comprising herbicide tolerance genes,
respectively, such as the primers comprising or consisting
(essentially) of the nucleotide sequence of SEQ ID NO: 18 and SEQ
ID NO: 19 respectively, and yield a DNA fragment of between 100 and
500 bp, such as a fragment of about 151 bp.
[0014] Reference seed comprising the elite event EE-GM3 of the
invention has been deposited at the NCIMB under accession number
NCIMB 41659. Reference seed comprising the elite event EE-GM1 of
the invention has been deposited at the NCIMB under accession
number NCIMB 41658. Reference seed comprising the elite event
EE-GM2 of the invention has been deposited at the NCIMB under
accession number NCIMB 41660. Reference seed comprising elite event
EE-GM3 and EE-GM1 was deposited at the ATCC under accession number
PTA-11041. Reference seed comprising elite event EE-GM3 and EE-GM2
was deposited at the ATCC under accession number PTA-11042.
[0015] One embodiment of the invention is seed comprising elite
event EE-GM3 (reference seed comprising said event being deposited
as NCIMB accession number NCIMB 41659) and further comprising elite
event EE-GM1 (reference seed comprising said event being deposited
as NCIMB accession number NCIMB 41658), or seed comprising event
EE-GM3 and EE-GM1 (reference seed comprising said events being
deposited at the ATCC under accession number PTA-11041) which will
grow into a soybean plant tolerant to at least three herbicides,
particularly tolerant to glyphosate and/or HPPD inhibitors such as
isoxaflutole and/or glutamine synthetase inhibitors such as
glufosinate.
[0016] Another embodiment of the invention is seed comprising elite
event EE-GM3 (reference seed comprising said event being deposited
as NCIMB accession number NCIMB 41659) and further comprising elite
event EE-GM2 (reference seed comprising said event being deposited
as NCIMB accession number NCIMB 41660), or seed comprising event
EE-GM3 and EE-GM2 (reference seed comprising said events being
deposited at the ATCC under accession number PTA-11042), which will
grow into a soybean plant tolerant to at least three herbicides,
particularly tolerant to glyphosate and/or HPPD inhibitors such as
isoxaflutole and/or glutamine synthetase inhibitors such as
glufosinate.
[0017] The seed of NCIMB deposit number NCIMB 41659, is a seed lot
consisting of at least about 95% transgenic seeds, comprising elite
event EE-GM3, which will grow into herbicide tolerant plants,
whereby the plants are glyphosate and/or isoxaflutole tolerant
plants. The seed or progeny seed obtainable or obtained from the
deposited seed (e.g., following crossing with other soybean plants
with a different genetic background) can be sown and the growing
plants can be treated with glyphosate or HPPD inhibitors such as
isoxaflutole as described herein to obtain glyphosate or
isoxaflutole-tolerant plants, comprising elite event EE-GM3. The
seed of NCIMB deposit number NCIMB 41658 and NCIMB 41660 are seed
lots consisting of at least about 95% transgenic seeds, comprising
elite events EE-GM1 or EE-GM2, respectively, which will grow into
herbicide tolerant plants, whereby the plants are
glufosinate-tolerant plants. The seed can be sown and the growing
plants can be treated with glufosinate as described herein to
obtain glufosinate tolerant plants, comprising the elite events
EE-GM1 or EE-GM2. The seed of ATCC deposit number PTA-11041, is a
seed lot consisting of at least about 95% transgenic seeds,
comprising elite event EE-GM3 and elite event EE-GM1 in homozygous
form, which will grow into herbicide tolerant plants, whereby the
plants are glyphosate, glufosinate and/or isoxaflutole tolerant
plants. The seed or progeny seed obtainable or obtained from the
deposited seed (e.g., following crossing with other soybean plants
with a different genetic background) can be sown and the growing
plants can be treated with glyphosate, glufosinate and/or HPPD
inhibitors such as isoxaflutole, as described herein to obtain
glyphosate, glufosinate and/or isoxaflutole-tolerant plants,
comprising elite event EE-GM3 and EE-GM1. The seed of ATCC deposit
number PTA-11042, is a seed lot consisting of at least about 95%
transgenic seeds, comprising elite event EE-GM3 and elite event
EE-GM2 in homozygous form, which will grow into herbicide tolerant
plants, whereby the plants are glyphosate, glufosinate and/or
isoxaflutole tolerant plants. The seed or progeny seed obtainable
or obtained from the deposited seed (e.g., following crossing with
other soybean plants with a different genetic background) can be
sown and the growing plants can be treated with glyphosate,
glufosinate and/or HPPD inhibitors such as isoxaflutole, as
described herein to obtain glyphosate, glufosinate and/or
isoxaflutole-tolerant plants, comprising elite event EE-GM3 and
EE-GM2.
[0018] The invention further relates to cells, tissues, progeny,
and descendants from a plant comprising the elite event EE-GM3 and
further comprising elite event EE-GM1, and which may be obtained by
growing a plant comprising the elite event EE-GM3 and EE-GM1
deposited at ATCC as PTA-11041, or by growing a plant comprising
the elite event EE-GM3 from the seed deposited at the NCIMB having
accession number NCIMB 41659 and crossing said plant with a plant
comprising elite event EE-GM1 grown from the seed deposited at the
NCIMB having accession number NCIMB 41658. The invention also
relates to cells, tissues, progeny, and descendants from a plant
comprising the elite event EE-GM3 and further comprising elite
event EE-GM2, and which may be obtained by growing a plant
comprising the elite event EE-GM3 and EE-GM2 deposited at ATCC as
PTA-11042, or by growing a plant comprising the elite event EE-GM3
from the seed deposited at the NCIMB having accession number NCIMB
41659 and crossing said plant with a plant comprising elite event
EE-GM2 grown from the seed deposited at the NCIMB having accession
number NCIMB 41660. The invention further relates to plants
obtainable from (such as by propagation of and/or breeding with) a
soybean plant or seed as described immediately above. The invention
also relates to soybean plants comprising elite event EE-GM3 and
EE-GM1 or EE-GM3 and EE-GM2.
[0019] The invention further relates to a method for identifying a
transgenic plant, or cells or tissues thereof, comprising elite
event EE-GM3 and EE-GM1 or EE-GM3 and EE-GM2, which method is based
on identifying the presence of characterizing DNA sequences or
amino acids encoded by such DNA sequences in the transgenic plant,
cells or tissues. According to a preferred embodiment of the
invention, such characterizing DNA sequences are sequences of at
least 15 bp, 15 bp, at least 20 bp, 20 bp, or 30 bp or more which
comprise the insertion site of the event, i.e., both a part of the
inserted foreign DNA comprising herbicide tolerance genes and a
part of the soybean genome (either the 5' or 3' flanking region)
contiguous therewith, allowing specific identification of the elite
event.
[0020] The present invention further relates to methods for
identifying elite events EE-GM3 and EE-GM1 or elite events EE-GM3
and EE-GM2 in biological samples, which methods are based on
primers or probes which specifically recognize the 5' and/or 3'
flanking sequence of the foreign DNA comprising the herbicide
tolerance genes in EE-GM3 and EE-GMT or EE-GM3 and EE-GM2.
[0021] More specifically, the invention relates to a method
comprising amplifying two sequences of a nucleic acid present in
biological samples, using two polymerase chain reactions each with
at least two primers or one polymerase chain reaction with at least
four primers, the first primer recognizing the 5' or 3' flanking
region of foreign DNA comprising herbicide tolerance genes
comprising the herbicide tolerance genes in EE-GM3, the second
primer recognizing a sequence within the foreign DNA comprising
herbicide tolerance genes of EE-GM3, the third primer recognizing
the 5' or 3' flanking region of foreign DNA comprising the
herbicide tolerance genes in EE-GM1 or EE-GM2, and the fourth
primer recognizing a sequence within the foreign DNA comprising the
herbicide tolerance genes of EE-GM1 or EE-GM2, preferably to obtain
two DNA fragments of between 100 and 800 bp. The primers for
identifying EE-GM3 may recognize a sequence within the 5' flanking
region of EE-GM3 (SEQ ID No. 2, from position 1 to position 1451)
or within the 3' flanking region of EE-GM3 (complement of SEQ ID No
3 from position 241 to position 1408) and a sequence within the
foreign DNA comprising the herbicide tolerance genes (complement of
SEQ ID No 2 from position 1452 to 1843 or SEQ ID No 3 from position
1 to position 240, or SEQ ID No 20 from nucleotide position 1452 to
nucleotide position 16638 or its complement), respectively. The
primer recognizing the 3' flanking region may comprise the
nucleotide sequence of SEQ ID No. 5 and the primer recognizing a
sequence within the foreign DNA comprising herbicide tolerance
genes may comprise the nucleotide sequence of SEQ ID No. 4 or SEQ
ID No.: 7 described herein. The primers for identifying EE-GM1 may
recognize a sequence within the 5' flanking region of EE-GM1 (SEQ
ID No. 12, from position 1 to position 209) or within the 3'
flanking region of EE-GM1 (complement of SEQ ID No 13 from position
569 to position 1000) and a sequence within the foreign DNA
comprising herbicide tolerance gene of EE-GM1 (complement of SEQ ID
No 12 from position 210 to 720, or SEQ ID No 13 from position 1 to
position 568), respectively. The primer recognizing the 5' flanking
region of EE-GM1 may comprise the nucleotide sequence of SEQ ID No.
16 and the primer recognizing a sequence within the foreign DNA of
EE-GM1 may comprise the nucleotide sequence of SEQ ID No. 17
described herein. The primers for identifying EE-GM2 may recognize
a sequence within the 5' flanking region of EE-GM2 (SEQ ID No. 14,
from position 1 to position 311) or within the 3' flanking region
of EE-GM2 (complement of SEQ ID No 15 from position 508 to position
1880) and a sequence within the foreign DNA comprising herbicide
tolerance gene of EE-GM1 (complement of SEQ ID No 14 from position
312 to 810, or SEQ ID No 15 from position 1 to position 507),
respectively. The primer recognizing the 3' flanking region of
EE-GM2 may comprise the nucleotide sequence of SEQ ID No. 18 and
the primer recognizing a sequence within the foreign DNA of EE-GM2
may comprise the nucleotide sequence of SEQ ID No. 19 described
herein. The PCR amplification may be done simultaneously or
sequentially.
[0022] The present invention more specifically relates to a method
for identifying elite event EE-GM3 and EE-GM1 in biological
samples, which method comprises amplifying at least two sequences
of nucleic acids present in a biological sample, using a polymerase
chain reaction with two primers comprising or consisting
(essentially) of the nucleotide sequence of SEQ ID No. 4 and SEQ ID
No. 5, respectively, to obtain a DNA fragment of about 263 bp, or
with two primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID No. 5 and SEQ ID No. 7 respectively,
to obtain a DNA fragment of about 706 bp, and a polymerase chain
reaction with two primers comprising or consisting (essentially) of
the nucleotide sequence of SEQ ID No. 16 and SEQ ID No. 17
respectively, to obtain a DNA fragment of about 183 bp. The two
polymerase chain reactions may be performed simultaneously or
sequentially.
[0023] The present invention more specifically relates to a method
for identifying elite event EE-GM3 and EE-GM2 in biological
samples, which method comprises amplifying at least two sequences
of nucleic acids present in a biological sample, using a polymerase
chain reaction with two primers comprising or consisting
(essentially) of the nucleotide sequence of SEQ ID No. 4 and SEQ ID
No. 5 respectively, to obtain a DNA fragment of about 263 bp, or
with two primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID No. 5 and SEQ ID No. 7 respectively,
to obtain a DNA fragment of about 706 bp, and a polymerase chain
reaction with two primers comprising or consisting (essentially) of
the nucleotide sequence of SEQ ID No. 18 and SEQ ID No. 19
respectively, to obtain a DNA fragment of about 151 bp. The two
polymerase chain reactions may be performed simultaneously or
sequentially.
[0024] The present invention further relates to the specific
flanking sequences of EE-GM3 described herein in combination with
the specific flanking sequences of EE-GM1, which can be used to
develop specific identification methods for simultaneous presence
of EE-GM3 and EE-GM1 in biological samples. Such combined specific
flanking sequences may also be used as reference control material
in identification assays. More particularly, the invention relates
to the 5' and/or 3' flanking regions of EE-GM3 in combination with
the 5' and/or 3' flanking regions of EE-GM1 which can be used for
the development of specific primers and probes as further described
herein. Also suitable as reference material are nucleic acid
molecules, preferably of about 150-850 bp, comprising the sequence
which can be amplified by primers comprising or consisting
(essentially) of the nucleotide sequence of SEQ ID No. 7 and SEQ ID
No. 5 or of SEQ ID No. 4 and SEQ ID No. 5 in combination with
nucleic acid molecules comprising the sequence which can be
amplified by primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID No. 16 and SEQ ID No. 17,
particularly such nucleic acid molecules are obtained using such
primers in material comprising EE-GM3 and EE-GM1.
[0025] The present invention further also relates to the specific
flanking sequences of EE-GM3 described herein in combination with
the specific flanking sequence of EE-GM2, which can be used to
develop specific identification methods for simultaneous presence
of EE-GM3 and EE-GM2 in biological samples. Such combined specific
flanking sequences may also be used as reference control material
in identification assays. More particularly, the invention relates
to the 5' and/or 3' flanking regions of EE-GM3 in combination with
the 5' and/or 3' flanking regions of EE-GM2 which can be used for
the development of specific primers and probes as further described
herein. Also suitable as reference material are nucleic acid
molecules, preferably of about 150-850 bp, comprising the sequence
which can be amplified by primers comprising or consisting
(essentially) of the nucleotide sequence of SEQ ID No. 7 and SEQ ID
No. 5 or of SEQ ID No. 4 and SEQ ID No. 5 in combination with
nucleic acid molecules comprising the sequence which can be
amplified by primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID No. 18 and SEQ ID No. 19,
particularly such nucleic acid molecules are obtained using such
primers in material comprising EE-GM3 and EE-GM2.
[0026] The invention further relates to identification methods for
the simultaneous presence of EE-GM3 and EE-GM1 in biological
samples based on the use of such specific primers or probes.
Primers for EE-GM3 detection may comprise, consist or consist
essentially of a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 2
from nucleotide 1 to nucleotide 1451 or the complement of the
nucleotide sequence of SEQ ID 3 from nucleotide 241 to nucleotide
1408, combined with primers comprising, consisting, or consisting
essentially of a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 1,
such as a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the complement of the nucleotide sequence
of SEQ ID No 2 from nucleotide 1452 to nucleotide 1843 or the
nucleotide sequence of SEQ ID No 3 from nucleotide 1 to nucleotide
240. Primers for EE-GM1 detection may comprise, consist or consist
essentially of a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 12
from nucleotide 1 to nucleotide 209 or the complement of the
nucleotide sequence of SEQ ID 13 from nucleotide 569 to nucleotide
1000, combined with primers comprising, consisting, or consisting
essentially of a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 11,
such as a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the complement of the nucleotide sequence
of SEQ ID No 12 from nucleotide 219 to nucleotide 720 or the
nucleotide sequence of SEQ ID No 13 from nucleotide 1 to nucleotide
568. Primers may also comprise these nucleotide sequences located
at their extreme 3' end, and further comprise unrelated sequences
or sequences derived from the mentioned nucleotide sequences, but
comprising mismatches.
[0027] The invention further relates to identification methods for
the simultaneous presence of EE-GM3 and EE-GM2 in biological
samples based on the use of such specific primers or probes.
Primers for EE-GM3 detection may comprise, consist or consist
essentially of a nucleotide sequence of 17 to about 200 consecutive
nucleotides as described in the previous paragraph. Primers for
EE-GM2 detection may comprise, consist or consist essentially of a
nucleotide sequence of 17 to about 200 consecutive nucleotides
selected from the nucleotide sequence of SEQ ID No 14 from
nucleotide 1 to nucleotide 311 or the complement of the nucleotide
sequence of SEQ ID 15 from nucleotide 508 to nucleotide 1880,
combined with primers comprising, consisting or consisting
essentially of a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the nucleotide sequence of SEQ ID No 11,
such as a nucleotide sequence of 17 to about 200 consecutive
nucleotides selected from the complement of the nucleotide sequence
of SEQ ID No 14 from nucleotide 312 to nucleotide 810 or the
nucleotide sequence of SEQ ID No 15 from nucleotide 1 to nucleotide
507. Primers may also comprise these nucleotide sequences located
at their extreme 3' end, and further comprise unrelated sequences
or sequences derived from the mentioned nucleotide sequences, but
comprising mismatches.
[0028] The invention further relates to kits for identifying elite
events EE-GM3 and EE-GM1 in biological samples, said kits
comprising at least one primer or probe which specifically
recognizes the 5' or 3' flanking region of the foreign DNA
comprising herbicide tolerance genes in EE-GM3 and at least one
primer or probe which specifically recognizes the 5' or 3' flanking
region of the foreign DNA comprising herbicide tolerance genes in
EE-GM1.
[0029] The invention further relates to kits for identifying elite
events EE-GM3 and EE-GM2 in biological samples, said kits
comprising at least one primer or probe which specifically
recognizes the 5' or 3' flanking region of the foreign DNA
comprising herbicide tolerance genes in EE-GM3 and at least one
primer or probe which specifically recognizes the 5' or 3' flanking
region of the foreign DNA comprising a herbicide tolerance gene in
EE-GM2.
[0030] The kits of the invention may comprise, in addition to a
primer which specifically recognizes the 5' or 3' flanking region
of EE-GM3 and the 5' or 3' flanking region of EE-GM1, a further
primer which specifically recognizes a sequence within the foreign
DNA comprising herbicide tolerance genes of EE-GM3 and a further
primer which specifically recognizes a sequence within the foreign
DNA comprising herbicide tolerance genes of EE-GM1, for use in a
PCR Identification Protocol.
[0031] The kits of the invention may also comprise, in addition to
a primer which specifically recognizes the 5' or 3' flanking region
of EE-GM3 and the 5' or 3' flanking region of EE-GM2, a further
primer which specifically recognizes a sequence within the foreign
DNA comprising herbicide tolerance genes of EE-GM3 and a further
primer which specifically recognizes a sequence within the foreign
DNA comprising herbicide tolerance genes of EE-GM2, for use in a
PCR Identification Protocol.
[0032] The printer recognizing the 3' flanking region of EE-GM3 may
comprise the nucleotide sequence of SEQ ID No. 5 and the primer
recognizing the transgenes or foreign DNA comprising herbicide
tolerance genes of EE-GM3 may comprises the nucleotide sequence of
SEQ ID No. 4 or 7, or any other primer or primer combination for
EE-GM3 detection as described herein, in combination with a primer
recognizing the 5' flanking region of EE-GM1 which may comprise the
nucleotide sequence of SEQ ID No. 16 and a primer recognizing the
transgenes of foreign DNA comprising the herbicide tolerance gene
of EE-GM 1 may comprise the nucleotide sequence of SEQ ID No
17.
[0033] The primer recognizing the 3' flanking region of EE-GM3 may
comprise the nucleotide sequence of SEQ ID No. 5 and the primer
recognizing the transgenes or foreign DNA comprising herbicide
tolerance genes of EE-GM3 may comprises the nucleotide sequence of
SEQ ID No. 4 or 7, or any other primer or primer combination for
EE-GM3 detection as described herein, in combination with a primer
recognizing the 5' flanking region of EE-GM2 which may comprise the
nucleotide sequence of SEQ ID No. 18 and a primer recognizing the
transgenes of foreign DNA comprising the herbicide tolerance gene
of EE-GM2 may comprise the nucleotide sequence of SEQ ID No 19.
[0034] The invention further relates to a kit for identifying elite
event EE-GM3 and EE-GM1 in biological samples, said kit comprising
PCR primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID No. 5 and SEQ ID No. 4 and PCR
primers comprising or consisting (essentially) of the nucleotide
sequence of SEQ ID 16 and SEQ ID 17 for use in the EE-GM3/EE-GM1
PCR based identification.
[0035] The invention further relates to a kit for identifying elite
event EE-GM3 and EE-GM2 in biological samples, said kit comprising
PCR primers comprising or consisting (essentially) of the
nucleotide sequence of SEQ ID No. 5 and SEQ ID No. 4 and PCR
primers comprising or consisting (essentially) of the nucleotide
sequence of SEQ ID 18 and SEQ ID 19 for use in the EE-GM3/EE-GM2
PCR based identification.
[0036] The invention also relates to a kit for identifying elite
event EE-GM3 and EE-GM1 in biological samples, which kit comprises
two specific probes, a first probe comprising or consisting
(essentially) of a sequence which corresponds (or is complementary
to) a sequence having between 80% and 100% sequence identity with a
specific region of EE-GM3 and a second probe comprising or
consisting (essentially) of a sequence which corresponds (or is
complementary to) a sequence having between 80% and 100% sequence
identity with a specific region of EE-GM1. Preferably, the sequence
of the first probe corresponds to a specific region comprising part
of the 5' or 3' flanking region of EE-GM3 and the second probe
corresponds to a specific region comprising part of the 5' or 3'
flanking region of EE-GM1. Most preferably the EE-GM3 specific
probe comprises or consists (essentially) of (or is complementary
to) a sequence having between 80% and 100% sequence identity to the
sequence between nucleotide 1441 to 1462 of SEQ ID No 2 or a
sequence having between 80% and 100% sequence identity to the
sequence between nucleotide 220 to 260 of ID No. 3 and the EE-GM1
specific probe comprises, consists (essentially) of (or is
complementary to) a sequence having between 80% and 100% sequence
identity to the sequence between nucleotide 199 to 220 of SEQ ID No
12 or a sequence having between 80% and 100% sequence identity to
the sequence between nucleotide 558 to 579 of ID No. 13.
[0037] The invention also relates to a kit for identifying elite
event EE-GM3 and EE-GM2 in biological samples, which kit comprises
two specific probes, a first probe comprising or consisting
(essentially) of a sequence which corresponds (or is complementary
to) a sequence having between 80% and 100% sequence identity with a
specific region of EE-GM3 and a second probe comprising or
consisting (essentially) of a sequence which corresponds (or is
complementary to) a sequence having between 80% and 100% sequence
identity with a specific region of EE-GM2. Preferably, the sequence
of the first probe corresponds to a specific region comprising part
of the 5' or 3' flanking region of EE-GM3 and the second probe
corresponds to a specific region comprising part of the 5' or 3'
flanking region of EE-GM2. Most preferably the EE-GM3 specific
probe comprises or consists (essentially) of (or is complementary
to) a sequence having between 80% and 100% sequence identity to the
sequence between nucleotide 1441 to 1462 of SEQ ID No 2 or a
sequence having between 80% and 100% sequence identity to the
sequence between nucleotide 220 to 260 of ID No. 3 and the EE-GM2
specific probe comprises or consists (essentially) of (or is
complementary to) a sequence having between 80% and 100% sequence
identity to the sequence between nucleotide 301 to 322 of SEQ ID No
14 or a sequence having between 80% and 100% sequence identity to
the sequence between nucleotide 497 to 518 of ID No. 15.
[0038] According to another aspect of the invention, DNA sequences
are disclosed comprising a junction site of the event and
sufficient length of polynucleotides of both the soybean genomic
DNA and the foreign DNA comprising herbicide tolerance genes
(transgene) of each event, so as to be useful as primer or probe
for the detection of EE-GM3 and EE-GM1. Such sequences may comprise
at least 9 nucleotides of the soybean genomic DNA and a similar
number of nucleotides of the foreign DNA comprising herbicide
tolerance genes (transgene) of EE-GM3 or EE-GM1, at each side of
the junction site respectively. Most preferably, such DNA sequences
comprise at least 9 nucleotides of the soybean genomic DNA and a
similar number of nucleotides of the foreign DNA comprising
herbicide tolerance genes contiguous with the junction site in SEQ
ID NO: 2 or SEQ ID NO: 3 and at least 9 nucleotides of the soybean
genomic DNA and a similar number of nucleotides of the foreign DNA
comprising herbicide tolerance genes contiguous with the junction
site in SEQ ID NO: 12 or SEQ ID NO: 13.
[0039] According to yet another aspect of the invention, DNA
sequences are disclosed comprising a junction site of the event and
sufficient length of polynucleotides of both the soybean genomic
DNA and the foreign DNA comprising herbicide tolerance genes
(transgene) of each event, so as to be useful as primer or probe
for the detection of EE-GM3 and EE-GM2. Such sequences may comprise
at least 9 nucleotides of the soybean genomic DNA and a similar
number of nucleotides of the foreign DNA comprising herbicide
tolerance genes (transgene) of EE-GM3 or EE-GM2, at each side of
the insertion site respectively. Most preferably, such DNA
sequences comprise at least 9 nucleotides of the soybean genomic
DNA and a similar number of nucleotides of the foreign DNA
comprising herbicide tolerance genes contiguous with the junction
site in SEQ ID NO: 2 or SEQ ID NO: 3 and at least 9 nucleotides of
the soybean genomic DNA and a similar number of nucleotides of the
foreign DNA comprising herbicide tolerance genes contiguous with
the junction site in SEQ ID NO: 14 or SEQ ID NO: 15.
[0040] The methods and kits encompassed by the present invention
can be used for different purposes such as, but not limited to the
following: to identify the presence or determine the (lower)
threshold of EE-GM3 and EE-GM1 or of EE-GM3 and EE-GM2 in plants,
plant material or in products such as, but not limited to food or
feed products (fresh or processed) comprising or derived from plant
material; additionally or alternatively, the methods and kits of
the present invention can be used to identify transgenic plant
material for purposes of segregation between transgenic and
non-transgenic material; additionally or alternatively, the methods
and kits of the present invention can be used to determine the
quality (i.e., percentage pure material) of plant material
comprising EE-GM3 and EE-GM1 or EE-GM3 and EE-GM1.
[0041] The invention further relates to the 5' and/or 3' flanking
regions of EE-GM3 GM3 in combination with specific primers and
probes developed from the 5' and/or 3' flanking sequences of EE-GM1
or EE-GM2, as well as to the specific primers and probes developed
from the 5' and/or 3' flanking sequences of EE-GM3 in combination
with specific primers and probes developed from the 5' and/or 3'
flanking sequences of EE-GM1 or EE-GM2.
[0042] The invention also relates to genomic DNA obtained from
plants comprising elite events EE-GM3 and EE-GM1 or plants
comprising elite events EE-GM3 and EE-GM2. Such genomic DNA may be
used as reference control material in the identification assays
herein described.
[0043] Also provided herein is a transgenic herbicide tolerant
soybean plant, or cells, parts, seeds or progeny thereof, each
comprising at least two elite events, said first elite event
comprising a foreign DNA comprising: [0044] i) a first chimeric
gene which comprises a modified epsps gene from Zea mays encoding a
glyphosate tolerant EPSPS enzyme under the control of a
plant-expressible promoter, and [0045] ii) a second chimeric gene
which comprises a modified hppd gene from Pseudomonas fluorescens
encoding an HPPD inhibitor herbicide tolerant enzyme under the
control of a plant-expressible promoter, and said second elite
event comprises a (third) chimeric gene which comprises a modified
glufosinate tolerance gene derived from Streptomyces
viridochromogenes encoding a glufosinate (or phosphinothricin)
acetyltransferase enzyme under the control of a plant-expressible
promoter.
[0046] In one embodiment, said first elite event comprises
nucleotides 1 to 1451 of SEQ ID No 2 immediately upstream of and
contiguous with said foreign DNA and nucleotides 241 to 1408 of SEQ
ID No 3 immediately downstream of and contiguous with said foreign
DNA, and said second event comprises nucleotides 1 to 209 of SEQ ID
No 12 immediately upstream of and contiguous with said foreign DNA
and nucleotides 569 to 1000 of SEQ ID No 13 immediately downstream
of and contiguous with said foreign DNA, or said second event
comprises nucleotides 1 to 311 of SEQ ID No 14 immediately upstream
of and contiguous with said foreign DNA and nucleotides 508 to 1880
of SEQ ID No 15 immediately downstream of and contiguous with said
foreign DNA.
[0047] In a further embodiment, said elite event is obtainable by
breeding with a soybean plant grown from reference seed comprising
said events having been deposited at the ATCC under deposit number
PTA-11041 or PTA-11042, or obtainable from reference seed
comprising said first event having been deposited at NCIMB under
accession number NCIMB 41659, and obtainable from reference seed
comprising said second event having been deposited at NCIMB under
accession number NCIMB 41658 or NCIMB accession number NCIMB
41660.
[0048] In another embodiment, the genomic DNA of said soybean
plant, or cells, parts, seeds or progeny thereof when analyzed
using the elite event identification protocol for said first elite
event with two primers comprising the nucleotide sequence of SEQ ID
No 4 and SEQ ID No 5 respectively, yields a DNA fragment of about
263 bp or 263 bp, and when analyzed using the elite event
identification protocol for said second elite event with two
primers comprising the nucleotide sequence of SEQ ID No 16 and SEQ
ID No 17 respectively, yields a DNA fragment of about 183 bp or 183
bp, or with two primers comprising the nucleotide sequence of SEQ
ID No 18 and SEQ ID No 19 respectively, yields a DNA fragment of
about 151 bp or 151 bp.
[0049] Also provided herein is a method for identifying a
transgenic soybean plant, or cells, parts, seed or progeny thereof
comprising 2 elite events, wherein said plant, cells, seed, or
progeny are tolerant to glyphosate, glufosinate and an HPPD
inhibitor herbicide (such as isoxaflutole), in biological samples,
said method comprising amplifying a DNA fragment of between 100 and
500 bp from a nucleic acid of said first event present in
biological samples using a polymerase chain reaction with at least
two primers, one of said primers recognizing the 5' flanking region
of the first elite event specified above, said 5' flanking region
comprising the nucleotide sequence of SEQ ID No 2 from nucleotide 1
to nucleotide 1451, or the 3' flanking region of said first elite
event, said 3' flanking region comprising the nucleotide sequence
of the complement of SEQ ID No 3 from nucleotide 241 to nucleotide
1408, the other primer of said primers recognizing a sequence
within the foreign DNA of said first event comprising the
nucleotide sequence of the complement of SEQ ID No 2 from
nucleotide 1452 to nucleotide 1843 or the nucleotide sequence of
SEQ ID No 3 from nucleotide 1 to nucleotide 240, and comprising
amplifying a DNA fragment of between 50 and 1000 bp, or between 100
and 500 hp from a nucleic acid of said second event present in
biological samples using a polymerase chain reaction with at least
two primers, one of said primers recognizing the 5' flanking region
of the second elite event specified above, said 5' flanking region
comprising the nucleotide sequence of nucleotides 1 to 209 of SEQ
ID No 12, or the 3' flanking region of said second elite event,
said 3' flanking region comprising the nucleotide sequence of the
complement of nucleotides 569 to 1000 of SEQ ID No 13, the other
primer of said primers recognizing a sequence within the foreign
DNA of said second event comprising the nucleotide sequence of the
complement of SEQ ID No 12 from nucleotide 210 to nucleotide 720 or
the nucleotide sequence of SEQ ID No 13 from nucleotide 1 to
nucleotide 568.
[0050] Also provided herein is a method for identifying a
transgenic soybean plant, or cells, parts, seed or progeny thereof
comprising 2 elite events, wherein said plant, cells, seed, or
progeny are tolerant to glyphosate, glufosinate and/or an HPPD
inhibitor herbicide (such as isoxaflutole), in biological samples,
said method comprising amplifying a DNA fragment of between 50 and
1000 or between 100 and 500 bp from a nucleic acid of said first
event present in biological samples using a polymerase chain
reaction with at least two primers, one of said primers recognizing
the 5' flanking region of the first elite event specified above,
said 5' flanking region comprising the nucleotide sequence of SEQ
ID No 2 from nucleotide 1 to nucleotide 1451, or the 3' flanking
region of said first elite event, said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No 3
from nucleotide 241 to nucleotide 1408, the other primer of said
primers recognizing a sequence within the foreign DNA of said first
event comprising the nucleotide sequence of the complement of SEQ
ID No 2 from nucleotide 1452 to nucleotide 1843 or the nucleotide
sequence of SEQ ID No 3 from nucleotide 1 to nucleotide 240, and
comprising amplifying a DNA fragment of between 50 and 1000 bp or
between 100 and 500 bp from a nucleic acid of said second event
present in biological samples using a polymerase chain reaction
with at least two primers, one of said primers recognizing the 5'
flanking region of the second elite event specified above, said 5'
flanking region comprising the nucleotide sequence of nucleotides 1
to 311 of SEQ ID No 14, or the 3' flanking region of said second
elite event, said 3' flanking region comprising the nucleotide
sequence of the complement of nucleotides 508 to 1880 of SEQ ID No
15, the other primer of said primers recognizing a sequence within
the foreign DNA of said second event comprising the nucleotide
sequence of the complement of SEQ ID No 14 from nucleotide 312 to
nucleotide 810 or the nucleotide sequence of SEQ ID No 15 from
nucleotide 1 to nucleotide 507.
[0051] Also provided herein is a kit for identifying a transgenic
soybean plant, or cells, parts, seed or progeny thereof comprising
2 elite events and being tolerant to glyphosate, glufosinate and an
HPPD inhibitor herbicide (such as isoxaflutole), in biological
samples, said kit comprising one primer recognizing the 5' flanking
region of the first elite event specified above, said 5' flanking
region comprising the nucleotide sequence of SEQ ID No 2 from
nucleotide 1 to nucleotide 1451, or one primer recognizing the 3'
flanking region of said first elite event, said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No 3
from nucleotide 241 to nucleotide 1408, and one primer recognizing
a sequence within the foreign DNA of said first event, said foreign
DNA comprising the nucleotide sequence of the complement of SEQ ID
No. 2 from nucleotide 1452 to nucleotide 1843 or the nucleotide
sequence of SEQ ID No 3 from nucleotide 1 to nucleotide 240, and
said kit comprising one primer recognizing the 5' flanking region
of the second elite event specified above, said 5' flanking region
comprising the nucleotide sequence of nucleotides 1 to 209 of SEQ
ID No 12, or one primer recognizing the 3' flanking region of said
second elite event, said 3' flanking region comprising the
nucleotide sequence of the complement of nucleotides 569 to 1000 of
SEQ ID No 13, the other primer of said primers recognizing a
sequence within the foreign DNA of said second event comprising the
nucleotide sequence of the complement of SEQ ID No 12 from
nucleotide 210 to nucleotide 720 or the nucleotide sequence of SEQ
ID No 13 from nucleotide 1 to nucleotide 568.
[0052] Also provided herein is a kit for identifying a transgenic
soybean plant, or cells, parts, seed or progeny thereof comprising
2 elite events and being tolerant to glyphosate, glufosinate and an
HPPD inhibitor herbicide (such as isoxaflutole), in biological
samples, said kit comprising one primer recognizing the 5' flanking
region of the first elite event specified above, said 5' flanking
region comprising the nucleotide sequence of SEQ ID No 2 from
nucleotide 1 to nucleotide 1451, or one primer recognizing the 3'
flanking region of said first elite event, said 3' flanking region
comprising the nucleotide sequence of the complement of SEQ ID No 3
from nucleotide 241 to nucleotide 1408, and one primer recognizing
a sequence within the foreign DNA of said first event, said foreign
DNA comprising the nucleotide sequence of the complement of SEQ ID
No. 2 from nucleotide 1452 to nucleotide 1843 or the nucleotide
sequence of SEQ ID No 3 from nucleotide 1 to nucleotide 240, and
said kit comprising one primer recognizing the 5' flanking region
of the second elite event specified above, said 5' flanking region
comprising the nucleotide sequence of nucleotides 1 to 311 of SEQ
ID No 14, or the 3' flanking region of said second elite event,
said 3' flanking region comprising the nucleotide sequence of the
complement of nucleotides 508 to 1880 of SEQ ID No 15, the other
primer of said primers recognizing a sequence within the foreign
DNA of said second event comprising the nucleotide sequence of the
complement of SEQ ID No 14 from nucleotide 312 to nucleotide 810 or
the nucleotide sequence of SEQ ID No 15 from nucleotide 1 to
nucleotide 507.
[0053] Also provided herein is a soybean plant, plant cell, tissue,
or seed, comprising in their genome a nucleic acid molecule
comprising a nucleotide sequence with at least 97, 98, or at least
99% or 99.5% sequence identity to the nucleotide sequence of SEQ ID
No. 20 from nucleotide position 1452 to nucleotide position 16638,
the nucleotide sequence of SEQ ID No. 20 from nucleotide position
2257 to nucleotide position 16601 or their complement, or a
nucleotide sequence with at least 97, 98, or at least 99% or 99.5%
sequence identity to SEQ ID No. 20 or the complement thereof, and
comprising in their genome a nucleic acid molecule comprising a
nucleotide sequence with at least 97, 98, or at least 99% or 99.5%
sequence identity to the nucleotide sequence of EE-GM1 or EE-GM2 or
the complement thereof, reference seed comprising EE-GM1 having
been deposited under deposit number NCIMB 41658, and reference seed
comprising EE-GM2 having been deposited under deposit number NCIMB
41660. In one embodiment of this invention, the nucleotide sequence
of EE-GM1 or EE-GM2 in said plant, plant cell, tissue, or seed, is
the DNA sequence (such as the foreign DNA sequence) in SEQ ID No 12
or 13, or the DNA sequence (such as the foreign DNA sequence) in
SEQ ID No 14 or 15, or the DNA sequence in the plant genome (such
as in the deposited seeds comprising EE-GM1 or EE-GM2 of the
invention) comprising SEQ ID No 12 and 13 between the first
nucleotide of the sequence of SEQ ID No 12 and the last nucleotide
of the sequence of SEQ ID No 13, or the DNA sequence in the plant
genome comprising SEQ ID No 14 and 15 between the first nucleotide
of the sequence of SEQ ID No 14 and the last nucleotide of the
sequence of SEQ ID No 15.
[0054] One embodiment of this invention provides a soybean plant,
plant cell, tissue, or seed, comprising in their genome a nucleic
acid molecule hybridizing to the nucleotide sequence of SEQ ID No 1
or the complement thereof, or hybridizing to the nucleotide
sequence of SEQ ID No. 20 from nucleotide position 1452 to
nucleotide position 16638 or the complement thereof, or hybridizing
to the nucleotide sequence of SEQ ID No. 20 or the complement
thereof, and comprising in their genome a nucleic acid molecule
hybridizing to the nucleotide sequence of EE-GM1 or EE-GM2 or the
complement thereof, reference seed comprising EE-GM1 having been
deposited under deposit number NCIMB 41658, and reference seed
comprising EE-GM2 having been deposited under deposit number NCIMB
41660. In one embodiment of this invention, the nucleotide sequence
of EE-GM1 or EE-GM2 in said plant, plant cell, tissue, or seed, is
the foreign DNA in SEQ ID No 12 or 13, or the foreign DNA in SEQ ID
No 14 or 15, or the foreign DNA sequence in the plant genome (such
as in the deposited seeds comprising EE-GM1 or EE-GM2 of the
invention) comprising SEQ ID No 12 and 13 between the first
nucleotide of the sequence of SEQ ID No 12 and the last nucleotide
of the sequence of SEQ ID No 13, or the foreign DNA sequence in the
plant genome comprising SEQ ID No 14 and 15 between the first
nucleotide of the sequence of SEQ ID No 14 and the last nucleotide
of the sequence of SEQ ID No 15.
BRIEF DESCRIPTION OF THE DRAWINGS
[0055] The following Examples, not intended to limit the invention
to specific embodiments described, may be understood in conjunction
with the accompanying Figures, incorporated herein by reference, in
which:
[0056] FIG. 1: Schematic representation of the relationship between
the cited nucleotide sequences and primers for elite event EE-GM3.
black bar: foreign DNA; hatched bar: DNA of plant origin; checkered
arrow (a): chimeric HPPD PF W366 encoding gene (see Table 1 for
composition of the chimeric gene); hatched arrow (b): chimeric
2mEPSPS encoding gene (see Table 1 for composition of the chimeric
gene); black arrows: oligonucleotide primers, the figures under the
bars represent nucleotide positions; (c) refers to complement of
the indicated nucleotide sequence; Note: the scheme is not drawn to
scale.
[0057] FIG. 2: Results obtained by the PCR Identification Protocol
developed for EE-GM3. Loading sequence of the gel: Lane 1:
Molecular weight marker (100 bp ladder); lanes 2 and 3: DNA samples
from soybean plants comprising the transgenic event EE-GM3; lanes
4-7: DNA samples from transgenic soybean plants not comprising
elite event EE-GM3, but comprising the same herbicide tolerance
genes (other transformation events); lane 8: DNA sample from wt
soybean; lane 9: no template DNA control; lane 10: molecular weight
marker.
[0058] FIG. 3: Schematic representation of the relationship between
the cited nucleotide sequences and primers for elite event EE-GM1.
black bar: foreign DNA; hatched bar: DNA of plant origin;
horizontally striped arrow (d): chimeric phosphinothricin
acetyltransferase encoding gene (see SEQ ID No. 11 for composition
of the chimeric gene; black arrows: oligonucleotide primers, the
figures under the bars represent nucleotide positions; (c) refers
to complement of the indicated nucleotide sequence; Note: the
scheme is not drawn to scale.
[0059] FIG. 4: Schematic representation of the relationship between
the cited nucleotide sequences and primers for elite event EE-GM2.
black bar: foreign DNA; hatched bar: DNA of plant origin;
horizontally striped arrow (d): chimeric phosphinothricin
acetyltransferase encoding gene (see SEQ ID No. 11 for composition
of the chimeric gene; black arrows: oligonucleotide primers, the
figures under the bars represent nucleotide positions; (c) refers
to complement of the indicated nucleotide sequence; NA: not
applicable. Note: the scheme is not drawn to scale.
[0060] FIG. 5: PCR Identification Protocol developed for EE-GM1.
Loading sequence of the gel: Lane1: DNA sample from soybean plants
comprising the transgenic event EE-GM1; lane 2: DNA sample from a
transgenic soybean plant not comprising elite event EE-GM1; lane 3:
control DNA samples from wild-type soybean plants; lane 4: no
template control; lane 5: molecular weight marker.
[0061] FIG. 6: PCR Identification Protocol developed for EE-GM2.
Loading sequence of the gel: Lane 1: DNA sample from soybean plants
comprising the transgenic event EE-GM2; lane 2: DNA sample from a
transgenic soybean plant not comprising elite event EE-GM2; lane 3:
control DNA samples from wild-type soybean plants; lane 4: no
template control; lane 5: molecular weight marker.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS OF THE
INVENTION
[0062] The incorporation of a recombinant DNA molecule in the plant
genome typically results from transformation of a cell or tissue.
The particular site of incorporation is usually due to random
integration.
[0063] The DNA introduced into the plant genome as a result of
transformation of a plant cell or tissue with a recombinant DNA or
"transforming DNA", and originating from such transforming DNA is
hereinafter referred to as "foreign DNA" comprising one or more
"transgenes". The transgenes of EE-GM3 are the glyphosate and HPPD
inhibitor herbicide tolerance genes. "Plant DNA" in the context of
the present invention will refer to DNA originating from the plant
which is transformed. Plant DNA will usually be found in the same
genetic locus in the corresponding wild-type plant. The foreign DNA
can be characterized by the location and the configuration at the
site of incorporation of the recombinant DNA molecule in the plant
genome. The site in the plant genome where a recombinant DNA has
been inserted is also referred to as the "insertion site" or
"target site". Insertion of the recombinant DNA into the region of
the plant genome referred to as "pre-insertion plant DNA" can be
associated with a deletion of plant DNA, referred to as "target
site deletion". A "flanking region" or "flanking sequence" as used
herein refers to a sequence of at least 20 bp, preferably at least
50 bp, and up to 5000 bp of DNA different from the introduced DNA,
preferably DNA from the plant genome which is located either
immediately upstream of and contiguous with or immediately
downstream of and contiguous with the foreign DNA. Transformation
procedures leading to random integration of the foreign DNA will
result in transformants with different flanking regions, which are
characteristic and unique for each transformant. When the
recombinant DNA is introduced into a plant through traditional
crossing, its insertion site in the plant genome, or its flanking
regions will generally not be changed.
[0064] An "isolated nucleic acid (sequence)" or "isolated DNA
(sequence)", as used herein, refers to a nucleic acid or DNA
(sequence) which is no longer in the natural environment it was
isolated from, e.g., the nucleic acid sequence in another bacterial
host or in a plant genome, or a nucleic acid or DNA fused to DNA or
nucleic acid from another origin, such as when contained in a
chimeric gene under the control of a plant-expressible
promoter.
[0065] An event is defined as a (artificial) genetic locus that, as
a result of genetic engineering, carries a foreign DNA or transgene
comprising at least one copy of a gene of interest or of the genes
of interest. The typical allelic states of an event are the
presence or absence of the foreign DNA.
[0066] An event is characterized phenotypically by the expression
of the transgene. At the genetic level, an event is part of the
genetic make-up of a plant. At the molecular level, an event can be
characterized by the restriction map (e.g., as determined by
Southern blotting), by the upstream and/or downstream flanking
sequences of the transgene, the location of molecular markers
and/or the molecular configuration of the transgene. Usually
transformation of a plant with a transforming DNA comprising at
least one gene of interest leads to a population of transformants
comprising a multitude of separate events, each of which is unique.
An event is characterized by the foreign DNA and at least one of
the flanking sequences.
[0067] An elite event, as used herein, is an event which is
selected from a group of events, obtained by transformation with
the same transforming DNA, based on the expression and stability of
the transgene(s) and its compatibility with optimal agronomic
characteristics of the plant comprising it. Thus the criteria for
elite event selection are one or more, preferably two or more,
advantageously all of the following: [0068] a) that the presence of
the foreign DNA does not compromise other desired characteristics
of the plant, such as those relating to agronomic performance or
commercial value; [0069] b) that the event is characterized by a
well defined molecular configuration which is stably inherited and
for which appropriate tools for identity control can be developed;
[0070] c) that the gene(s) of interest show(s) a correct,
appropriate and stable spatial and temporal phenotypic expression,
both in heterozygous (or hemizygous) and homozygous condition of
the event, at a commercially acceptable level in a range of
environmental conditions in which the plants carrying the event are
likely to be exposed in normal agronomic use.
[0071] It is preferred that the foreign DNA is associated with a
position in the plant genome that allows easy introgression into
desired commercial genetic backgrounds.
[0072] The status of an event as an elite event is confirmed by
introgression of the elite event in different relevant genetic
backgrounds and observing compliance with one, two or all of the
criteria e.g. a), b) and c) above.
[0073] An "elite event" thus refers to a genetic locus comprising a
foreign DNA, which meets the above-described criteria. A plant,
plant material or progeny such as seeds can comprise one or more
elite events in its genome.
[0074] The tools developed to identify an elite event or the plant
or plant material comprising an elite event, or products which
comprise plant material comprising the elite event, are based on
the specific genomic characteristics of the elite event, such as, a
specific restriction map of the genomic region comprising the
foreign DNA, molecular markers or the sequence of the flanking
region(s) of the foreign DNA.
[0075] Once one or both of the flanking regions of the foreign DNA
have been sequenced, primers and probes can be developed which
specifically recognize this (these) sequence(s) in the nucleic acid
(DNA or RNA) of a sample by way of a molecular biological
technique. For instance a PCR method can be developed to identify
the elite event in biological samples (such as samples of plants,
plant material or products comprising plant material). Such a PCR
is based on at least two specific "primers", one recognizing a
sequence within the 5' or 3' flanking region of the elite event and
the other recognizing a sequence within the foreign DNA. The
primers preferably have a sequence of between 15 and 35 nucleotides
which under optimized PCR conditions "specifically recognize" a
sequence within the 5' or 3' flanking region of the elite event and
the foreign DNA of the elite event respectively, so that a specific
fragment ("integration fragment" or discriminating amplicon) is
amplified from a nucleic acid sample comprising the elite event.
This means that only the targeted integration fragment, and no
other sequence in the plant genome or foreign DNA, is amplified
under optimized PCR conditions.
[0076] PCR primers suitable for identification of EE-GM3 may be the
following: [0077] oligonucleotides ranging in length from 17 nt to
about 200 nt, comprising a nucleotide sequence of at least 17
consecutive nucleotides, preferably 20 consecutive nucleotides,
selected from the plant DNA in the 5' flanking sequence (SEQ ID No
2 from nucleotide 1 to nucleotide 1451) at their 3' end (primers
recognizing 5' flanking sequences); or [0078] oligonucleotides
ranging in length from 17 nt to about 200 nt, comprising a
nucleotide sequence of at least 17 consecutive nucleotides,
preferably 20 consecutive nucleotides, selected from the plant DNA
in the 3' flanking sequence (complement of SEQ ID No 3 from
nucleotide 241 to nucleotide 1408) at their 3' end (primers
recognizing 3' flanking sequences); or [0079] oligonucleotides
ranging in length from 17 nt to about 200 nt, comprising a
nucleotide sequence of at least 17 consecutive nucleotides,
preferably 20 consecutive nucleotides, selected from the inserted
DNA sequences (complement of SEQ ID No 2 from nucleotide 1452 to
nucleotide 1843) at their 3' end (primers recognizing foreign DNA);
or [0080] oligonucleotides ranging in length from 17 nt to about
200 nt, comprising a nucleotide sequence of at least 17 consecutive
nucleotides, preferably 20 consecutive nucleotides, selected from
the inserted DNA sequences (SEQ ID No 3 from nucleotide 1 to
nucleotide 240); or [0081] suitable oligonucleotides ranging in
length from 17 nt to about 200 nt, comprising a nucleotide sequence
of at least 17 consecutive nucleotides, preferably 20 consecutive
nucleotides, selected from the nucleotide sequence of the inserted
DNA fragment or its complement (SEQ ID No 1 or SEQ ID No 20 from
nucleotide position 1452 to 16638).
[0082] The printers may of course be longer than the mentioned 17
consecutive nucleotides, and may, e.g., be 20, 21, 30, 35, 50, 75,
100, 150, 200 nt long or even longer. The primers may entirely
consist of nucleotide sequence selected from the mentioned
nucleotide sequences of flanking sequences and foreign DNA
sequences. However, the nucleotide sequence of the primers at their
5' end (i.e. outside of the 3'-located 17 consecutive nucleotides)
is less critical. Thus, the 5' sequence of the primers may comprise
or consist of a nucleotide sequence selected from the flanking
sequences or foreign DNA, as appropriate, but may contain several
(e.g., 1, 2, 5, or 10) mismatches. The 5' sequence of the primers
may even entirely be a nucleotide sequence unrelated to the
flanking sequences or foreign DNA, such as, e.g., a nucleotide
sequence representing one or more restriction enzyme recognition
sites. Such unrelated sequences or flanking DNA sequences with
mismatches should preferably be not longer than 100, more
preferably not longer than 50 or even 25 nucleotides.
[0083] Moreover, suitable primers may comprise, consist or consist
essentially of a nucleotide sequence at their 3' end spanning the
joining region between the plant DNA derived sequences and the
foreign DNA sequences (located at nucleotides 1451-1452 in SEQ ID
No 2 and nucleotides 240-241 in SEQ ID No 3 for EE-GM3) provided
the mentioned 3'-located 17 consecutive nucleotides are not derived
exclusively from either the foreign DNA or plant-derived sequences
in SEQ ID No 2 or 3.
[0084] It will also be immediately clear to the skilled artisan
that properly selected PCR primer pairs should also not comprise
sequences complementary to each other.
[0085] For the purpose of the invention, the "complement of a
nucleotide sequence represented in SEQ ID No: X" is the nucleotide
sequence which can be derived from the represented nucleotide
sequence by replacing the nucleotides with their complementary
nucleotide according to Chargaff's rules (AT; GC) and reading the
sequence in the 5' to 3' direction, i.e., in opposite direction of
the represented nucleotide sequence.
[0086] Examples of suitable primers for EE-GM3 are the
oligonucleotide sequences of SEQ ID No 5 (3' flanking sequence
recognizing primer), SEQ ID No 4 (foreign DNA recognizing primer
for use with a 3' flanking sequence recognizing primers), or SEQ ID
No 7 (foreign DNA recognizing primer for use with a 3' flanking
sequence recognizing primers).
[0087] Other examples of suitable oligonucleotide primers for
EE-GM3 comprise at their 3' end the following sequences or consist
(essentially) of such sequences:
a. 5' flanking sequence recognizing primers: [0088] the nucleotide
sequence of SEQ ID No 2 from nucleotide 264 to nucleotide 283
[0089] the nucleotide sequence of SEQ ID No 2 from nucleotide 266
to nucleotide 285 [0090] the nucleotide sequence of SEQ ID No 2
from nucleotide 1240 to nucleotide 1259 [0091] the nucleotide
sequence of SEQ ID No 2 from nucleotide 265 to nucleotide 285
[0092] the nucleotide sequence of SEQ ID No 2 from nucleotide 265
to nucleotide 283 [0093] the nucleotide sequence of SEQ ID No 2
from nucleotide 1239 to nucleotide 1259 [0094] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1241 to nucleotide 1259
[0095] the nucleotide sequence of SEQ ID No 2 from nucleotide 1244
to nucleotide 1263 [0096] the nucleotide sequence of SEQ ID No 2
from nucleotide 1248 to nucleotide 1267 [0097] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1250 to nucleotide 1269
[0098] the nucleotide sequence of SEQ ID No 2 from nucleotide 262
to nucleotide 279 [0099] the nucleotide sequence of SEQ ID No 2
from nucleotide 263 to nucleotide 279 [0100] the nucleotide
sequence of SEQ ID No 2 from nucleotide 264 to nucleotide 285
[0101] the nucleotide sequence of SEQ ID No 2 from nucleotide 266
to nucleotide 283 [0102] the nucleotide sequence of SEQ ID No 2
from nucleotide 1238 to nucleotide 1259 [0103] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1242 to nucleotide 1259
[0104] the nucleotide sequence of SEQ ID No 2 from nucleotide 1243
to nucleotide 1263 [0105] the nucleotide sequence of SEQ ID No 2
from nucleotide 1245 to nucleotide 1263 [0106] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1247 to nucleotide 1267
[0107] the nucleotide sequence of SEQ ID No 2 from nucleotide 1249
to nucleotide 1269 [0108] the nucleotide sequence of SEQ ID No 2
from nucleotide 1249 to nucleotide 1267 [0109] the nucleotide
sequence of SEQ ID No 2 from nucleotide 263 to nucleotide 285
[0110] the nucleotide sequence of SEQ ID No 2 from nucleotide 267
to nucleotide 283 [0111] the nucleotide sequence of SEQ ID No 2
from nucleotide 1242 to nucleotide 1263 [0112] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1243 to nucleotide 1259
[0113] the nucleotide sequence of SEQ ID No 2 from nucleotide 1246
to nucleotide 1267 [0114] the nucleotide sequence of SEQ ID No 2
from nucleotide 1246 to nucleotide 1263 [0115] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1248 to nucleotide 1269
[0116] the nucleotide sequence of SEQ ID No 2 from nucleotide 1250
to nucleotide 1271 [0117] the nucleotide sequence of SEQ ID No 2
from nucleotide 1250 to nucleotide 1267 [0118] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1241 to nucleotide 1263
[0119] the nucleotide sequence of SEQ ID No 2 from nucleotide 1245
to nucleotide 1267 [0120] the nucleotide sequence of SEQ ID No 2
from nucleotide 1247 to nucleotide 1269 [0121] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1247 to nucleotide 1263
[0122] the nucleotide sequence of SEQ ID No 2 from nucleotide 1249
to nucleotide 1271 [0123] the nucleotide sequence of SEQ ID No 2
from nucleotide 1242 to nucleotide 1261 [0124] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1241 to nucleotide 1261
[0125] the nucleotide sequence of SEQ ID No 2 from nucleotide 1243
to nucleotide 1261 [0126] the nucleotide sequence of SEQ ID No 2
from nucleotide 1240 to nucleotide 1261 [0127] the nucleotide
sequence of SEQ ID No 2 from nucleotide 1244 to nucleotide 1261
[0128] the nucleotide sequence of SEQ ID No 2 from nucleotide 1239
to nucleotide 1261 [0129] the nucleotide sequence of SEQ ID No 2
from nucleotide 1245 to nucleotide 1261 b. foreign DNA sequence
recognizing primers for use with 5' flanking sequence recognizing
primers: [0130] the complement of the nucleotide sequence of SEQ ID
No 2 from nucleotide 1732 to nucleotide 1751 [0131] the complement
of the nucleotide sequence of SEQ ID No 2 from nucleotide 1735 to
nucleotide 1754 [0132] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1731 to nucleotide 1750 [0133] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1732 to nucleotide 1750 [0134] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1732 to
nucleotide 1752 [0135] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1731 to nucleotide 1749 [0136] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1732 to nucleotide 1749 [0137] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1731 to
nucleotide 1751 [0138] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1732 to nucleotide 1753 [0139] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1731 to nucleotide 1748 [0140] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1732 to
nucleotide 1748 [0141] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1735 to nucleotide 1751 [0142] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1731 to nucleotide 1752 [0143] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1732 to
nucleotide 1754 [0144] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1731 to nucleotide 1747 [0145] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1731 to nucleotide 1753 [0146] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1727 to
nucleotide 1746 [0147] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1727 to nucleotide 1745 [0148] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1727 to nucleotide 1747 [0149] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1727 to
nucleotide 1744 [0150] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1727 to nucleotide 1748 [0151] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1727 to nucleotide 1749 [0152] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1726 to
nucleotide 1745 [0153] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1726 to nucleotide 1744 [0154] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1726 to nucleotide 1746 [0155] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1726 to
nucleotide 1747 [0156] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1726 to nucleotide 1748 [0157] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1724 to nucleotide 1744 [0158] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1724 to
nucleotide 1745 [0159] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1724 to nucleotide 1746 [0160] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1461 to nucleotide 1478 [0161] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1670 to
nucleotide 1686 [0162] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1469 to nucleotide 1486 [0163] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1508 to nucleotide 1527 [0164] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1667 to
nucleotide 1686 [0165] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1670 to nucleotide 1687 [0166] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1673 to nucleotide 1689 [0167] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1688 to
nucleotide 1704 [0168] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1688 to nucleotide 1705 [0169] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1692 to nucleotide 1709 [0170] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1467 to
nucleotide 1486 [0171] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1481 to nucleotide 1497 [0172] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1481 to nucleotide 1498 [0173] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1491 to
nucleotide 1507 [0174] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1491 to nucleotide 1508 [0175] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1672 to nucleotide 1688 [0176] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1673 to
nucleotide 1690 [0177] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1673 to nucleotide 1691 [0178] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1688 to nucleotide 1706 [0179] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1691 to
nucleotide 1707 [0180] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1691 to nucleotide 1708 [0181] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1469 to nucleotide 1487 [0182] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1481 to
nucleotide 1499 [0183] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1489 to nucleotide 1505 [0184] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1489 to nucleotide 1506 [0185] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1489 to
nucleotide 1507 [0186] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1489 to nucleotide 1508 [0187] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1666 to nucleotide 1686 [0188] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1667 to
nucleotide 1687 [0189] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1670 to nucleotide 1688 [0190] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1672 to nucleotide 1689 [0191] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1688 to
nucleotide 1707 [0192] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1691 to nucleotide 1709 [0193] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1692 to nucleotide 1710 [0194] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1481 to
nucleotide 1500 [0195] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1491 to nucleotide 1509 [0196] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1670 to nucleotide 1689 [0197] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1672 to
nucleotide 1690 [0198] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1672 to nucleotide 1691 [0199] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1687 to nucleotide 1705 [0200] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1687 to
nucleotide 1706 [0201] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1691 to nucleotide 1710 [0202] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1472 to nucleotide 1488 [0203] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1488 to
nucleotide 1507 [0204] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1491 to nucleotide 1510 [0205] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1495 to nucleotide 1512 [0206] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1495 to
nucleotide 1513 [0207] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1495 to nucleotide 1514 [0208] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1673 to nucleotide 1692 [0209] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1678 to
nucleotide 1694 [0210] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1678 to nucleotide 1695 [0211] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1678 to nucleotide 1696 [0212] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1687 to
nucleotide 1703 [0213] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1687 to nucleotide 1704 [0214] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1692 to nucleotide 1711 [0215] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1469 to
nucleotide 1488 [0216] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1488 to nucleotide 1506 [0217] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1491 to nucleotide 1511 [0218] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1670 to
nucleotide 1690 [0219] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1678 to nucleotide 1697 [0220] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1688 to nucleotide 1709 [0221] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1467 to
nucleotide 1487 [0222] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1488 to nucleotide 1508 [0223] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1495 to nucleotide 1511 [0224] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1491 to
nucleotide 1512 [0225] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1666 to nucleotide 1687 [0226] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1667 to nucleotide 1688 [0227] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1672 to
nucleotide 1692 [0228] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1673 to nucleotide 1693 [0229] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1687 to nucleotide 1707 [0230] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1472 to
nucleotide 1490 [0231] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1472 to nucleotide 1491 [0232] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1481 to nucleotide 1501 [0233] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1489 to
nucleotide 1509 [0234] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1495 to nucleotide 1515 [0235] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1670 to nucleotide 1691 [0236] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1673 to
nucleotide 1694 [0237] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1678 to nucleotide 1698 [0238] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1469 to nucleotide 1489
[0239] the complement of the nucleotide sequence of SEQ ID No 2
from nucleotide 1667 to nucleotide 1689 [0240] the complement of
the nucleotide sequence of SEQ ID No 2 from nucleotide 1687 to
nucleotide 1708 [0241] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1688 to nucleotide 1710 [0242] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1691 to nucleotide 1711 [0243] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1472 to
nucleotide 1492 [0244] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1489 to nucleotide 1510 [0245] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1666 to nucleotide 1688 [0246] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1687 to
nucleotide 1709 [0247] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1692 to nucleotide 1712 [0248] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1467 to nucleotide 1488 [0249] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1469 to
nucleotide 1490 [0250] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1488 to nucleotide 1509 [0251] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1489 to nucleotide 1511 [0252] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1678 to
nucleotide 1699 [0253] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1472 to nucleotide 1493 [0254] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1472 to nucleotide 1494 [0255] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1481 to
nucleotide 1502 [0256] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1670 to nucleotide 1692 [0257] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1469 to nucleotide 1491 [0258] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1488 to
nucleotide 1510 [0259] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1691 to nucleotide 1712 [0260] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1692 to nucleotide 1713 [0261] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1692 to
nucleotide 1714 [0262] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1467 to nucleotide 1489 [0263] the
complement of the nucleotide sequence of SEQ ID No 2 from
nucleotide 1678 to nucleotide 1700 [0264] the complement of the
nucleotide sequence of SEQ ID No 2 from nucleotide 1481 to
nucleotide 1503 [0265] the complement of the nucleotide sequence of
SEQ ID No 2 from nucleotide 1691 to nucleotide 1713 c. 3' flanking
sequence recognizing primers: [0266] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 828 to
nucleotide 847 [0267] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 830 to nucleotide 849 [0268] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 828 to nucleotide 846 [0269] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 828 to
nucleotide 848 [0270] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 830 to nucleotide 848 [0271] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 830 to nucleotide 850 [0272] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 828 to
nucleotide 845 [0273] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 830 to nucleotide 847 [0274] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 828 to nucleotide 849 [0275] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 830 to
nucleotide 851 [0276] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 828 to nucleotide 844 [0277] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 830 to nucleotide 846 [0278] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 828 to
nucleotide 850 [0279] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 830 to nucleotide 852 [0280] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 992 to nucleotide 1009 [0281] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 731 to
nucleotide 752 [0282] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 776 to nucleotide 795 [0283] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 731 to nucleotide 753 [0284] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 776 to
nucleotide 794 [0285] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 776 to nucleotide 796 [0286] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 776 to nucleotide 793 [0287] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 776 to
nucleotide 797 [0288] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 776 to nucleotide 792 [0289] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 776 to nucleotide 798 [0290] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 733 to
nucleotide 752 [0291] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 733 to nucleotide 753 [0292] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 733 to nucleotide 754 [0293] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 733 to
nucleotide 755 [0294] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 838 to nucleotide 854 [0295] the
complement of the nucleotide sequence of SEQ ID No 3 from
nucleotide 246 to nucleotide 263 [0296] the complement of the
nucleotide sequence of SEQ ID No 3 from nucleotide 838 to
nucleotide 855 [0297] the complement of the nucleotide sequence of
SEQ ID No 3 from nucleotide 245 to nucleotide 264 d. foreign DNA
sequence recognizing primers for use with 3' flanking sequence
recognizing primers: [0298] the nucleotide sequence of SEQ ID No 3
from nucleotide 173 to nucleotide 192 [0299] the nucleotide
sequence of SEQ ID No 3 from nucleotide 22 to nucleotide 41 [0300]
the nucleotide sequence of SEQ ID No 3 from nucleotide 172 to
nucleotide 192 [0301] the nucleotide sequence of SEQ ID No 3 from
nucleotide 174 to nucleotide 192 [0302] the nucleotide sequence of
SEQ ID No 3 from nucleotide 191 to nucleotide 210 [0303] the
nucleotide sequence of SEQ ID No 3 from nucleotide 171 to
nucleotide 192 [0304] the nucleotide sequence of SEQ ID No 3 from
nucleotide 175 to nucleotide 192 [0305] the nucleotide sequence of
SEQ ID No 3 from nucleotide 190 to nucleotide 210 [0306] the
nucleotide sequence of SEQ ID No 3 from nucleotide 192 to
nucleotide 210 [0307] the nucleotide sequence of SEQ ID No 3 from
nucleotide 176 to nucleotide 192 [0308] the nucleotide sequence of
SEQ ID No 3 from nucleotide 189 to nucleotide 210 [0309] the
nucleotide sequence of SEQ ID No 3 from nucleotide 193 to
nucleotide 210 [0310] the nucleotide sequence of SEQ ID No 3 from
nucleotide 188 to nucleotide 210 [0311] the nucleotide sequence of
SEQ ID No 3 from nucleotide 194 to nucleotide 210 [0312] the
nucleotide sequence of SEQ ID No 3 from nucleotide 199 to
nucleotide 218 [0313] the nucleotide sequence of SEQ ID No 3 from
nucleotide 200 to nucleotide 218 [0314] the nucleotide sequence of
SEQ ID No 3 from nucleotide 197 to nucleotide 218 [0315] the
nucleotide sequence of SEQ ID No 3 from nucleotide 201 to
nucleotide 218 [0316] the nucleotide sequence of SEQ ID No 3 from
nucleotide 201 to nucleotide 220 [0317] the nucleotide sequence of
SEQ ID No 3 from nucleotide 200 to nucleotide 220 [0318] the
nucleotide sequence of SEQ ID No 3 from nucleotide 199 to
nucleotide 220 [0319] the nucleotide sequence of SEQ ID No 3 from
nucleotide 200 to nucleotide 221 [0320] the nucleotide sequence of
SEQ ID No 3 from nucleotide 199 to nucleotide 221 [0321] the
nucleotide sequence of SEQ ID No 3 from nucleotide 150 to
nucleotide 172
[0322] PCR primers suitable for the identification of EE-GM1 have
been described in WO2006/108674, particularly on page 8, line 4 to
page 26, line 7 (herein incorporated by reference).
[0323] PCR primers suitable for the identification of EE-GM2 have
been described in WO2006/108675, particularly on pages 8, line 4 to
page 33, line 4 (herein incorporated by reference).
[0324] As used herein, "the nucleotide sequence of SEQ ID No. Z
from position X to position Y" indicates the nucleotide sequence
including both nucleotide endpoints.
[0325] Preferably, the amplified fragment has a length of between
50 and 500 nucleotides, such as a length between 100 and 350
nucleotides. The specific primers may have a sequence which is
between 80 and 100% identical to a sequence within the 5' or 3'
flanking region of the elite event and the foreign DNA of the elite
event, respectively, provided the mismatches still allow specific
identification of the elite event with these primers under
optimized PCR conditions. The range of allowable mismatches
however, can easily be determined experimentally and are known to a
person skilled in the art.
[0326] Detection of integration fragments can occur in various
ways, e.g., via size estimation after gel analysis. The integration
fragments may also be directly sequenced. Other sequence specific
methods for detection of amplified DNA fragments are also known in
the art.
[0327] As the sequence of the primers and their relative location
in the genome are unique for the elite event, amplification of the
integration fragment will occur only in biological samples
comprising (the nucleic acid of) the elite event. Preferably when
performing a PCR to identify the presence of elite events EE-GM3
and EE-GM1 or elite events EE-GM3 and EE-GM2 in unknown samples, a
control is included of a set of primers with which a fragment
within a "housekeeping gene" of the plant species of the event can
be amplified. Housekeeping genes are genes that are expressed in
most cell types and which are concerned with basic metabolic
activities common to all cells. Preferably, the fragment amplified
from the housekeeping gene is a fragment which is larger than the
amplified integration fragment. Depending on the samples to be
analyzed, other controls can be included.
[0328] Standard PCR protocols are described in the art, such as in
`PCR Applications Manual" (Roche Molecular Biochemicals, 2nd
Edition, 1999) and other references. The optimal conditions for the
PCR, including the sequence of the specific primers, are specified
in a "PCR (or Polymerase Chain Reaction) Identification Protocol"
for each elite event. It is however understood that a number of
parameters in the PCR Identification Protocol may need to be
adjusted to specific laboratory conditions, and may be modified
slightly to obtain similar results. For instance, use of a
different method for preparation of DNA may require adjustment of,
for instance, the amount of primers, polymerase and annealing
conditions used. Similarly, the selection of other primers may
dictate other optimal conditions for the PCR Identification
Protocol. These adjustments will however be apparent to a person
skilled in the art, and are furthermore detailed in current PCR
application manuals such as the one cited above.
[0329] Alternatively, specific primers can be used to amplify
integration fragments that can be used as "specific probes" for
identifying EE-GM3 and EE-GM1 or EE-GM3 and EE-GM2 in biological
samples. Contacting nucleic acid of a biological sample, with the
probes, under conditions which allow hybridization of the probes
with their corresponding fragments in the sample nucleic acid,
results in the formation of nucleic acid/probe hybrids. The
formation of these hybrids can be detected (e.g. via labeling of
the nucleic acid or probe), whereby the formation of these hybrids
indicates the presence of EE-GM3 and EE-GM1 or EE-GM3 and EE-GM2.
Such identification methods based on hybridization with a specific
probe (either on a solid phase carrier or in solution) have been
described in the art. The specific probe is preferably a sequence
which, under optimized conditions, hybridizes specifically to a
region within the 5' or 3' flanking region of the elite event and
preferably also comprising part of the foreign DNA contiguous
therewith (hereinafter referred to as "specific region").
Preferably, the specific probe comprises a sequence of between 50
and 500 bp, preferably of 100 to 350 bp which is at least 80%,
preferably between 80 and 85%, more preferably between 85 and 90%,
especially preferably between 90 and 95%, most preferably between
95% and 100% identical (or complementary) to the nucleotide
sequence of a specific region. Preferably, the specific probe will
comprise a sequence of about 15 to about 100 contiguous nucleotides
identical (or complementary) to a specific region of the elite
event.
[0330] Furthermore, detection methods specific for elite events
EE-GM3 and EE-GM1 or for elite events EE-GM3 and EE-GM2 which
differ from PCR based amplification methods can also be developed
using the elite event specific sequence information provided
herein. Such alternative detection methods include linear signal
amplification detection methods based on invasive cleavage of
particular nucleic acid structures, also known as Invader.TM.
technology, (as described e.g. in U.S. Pat. No. 5,985,557 "Invasive
Cleavage of Nucleic Acids", 6,001,567 "Detection of Nucleic Acid
sequences by Invader Directed Cleavage, incorporated herein by
reference). For EE-GM3 detection by this method, the target
sequence may hybridized with a labeled first nucleic acid
oligonucleotide comprising the nucleotide sequence of SEQ ID No 2
from nucleotide 1452 to nucleotide 1469 or its complement or said
labeled nucleic acid probe comprising the nucleotide sequence of
SEQ ID No 3 from nucleotide 223 to nucleotide 240 or its complement
and is further hybridized with a second nucleic acid
oligonucleotide comprising the nucleotide sequence of SEQ ID No 2
from nucleotide 1434 to nucleotide 1451 or its complement or said
labeled nucleic acid probe comprising the nucleotide sequence of
SEQ ID No 3 from nucleotide 241 to nucleotide 258 or its
complement, wherein the first and second oligonucleotide overlap by
at least one nucleotide. The duplex or triplex structure which is
produced by this hybridization allows selective probe cleavage with
an enzyme (Cleavase0) leaving the target sequence intact. The
cleaved labeled probe is subsequently detected, potentially via an
intermediate step resulting in further signal amplification. For
EE-GM1 detection by this method, the target sequence may hybridized
with a labeled first nucleic acid oligonucleotide comprising the
nucleotide sequence of SEQ ID No 12 from nucleotide 210 to
nucleotide 227 or its complement or said labeled nucleic acid probe
comprising the nucleotide sequence of SEQ ID No 13 from nucleotide
561 to nucleotide 568 or its complement and is further hybridized
with a second nucleic acid oligonucleotide comprising the
nucleotide sequence of SEQ ID No 12 from nucleotide 192 to
nucleotide 209 or its complement or said labeled nucleic acid probe
comprising the nucleotide sequence of SEQ ID No 13 from nucleotide
569 to nucleotide 586 or its complement, wherein the first and
second oligonucleotide overlap by at least one nucleotide. The
duplex or triplex structure which is produced by this hybridization
allows selective probe cleavage with an enzyme (Cleavase.RTM.)
leaving the target sequence intact. The cleaved labeled probe is
subsequently detected, potentially via an intermediate step
resulting in further signal amplification. For EE-GM2 detection by
this method, the target sequence may hybridized with a labeled
first nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 14 from nucleotide 312 to nucleotide 329 or
its complement or said labeled nucleic acid probe comprising the
nucleotide sequence of SEQ ID No 15 from nucleotide 490 to
nucleotide 507 or its complement and is further hybridized with a
second nucleic acid oligonucleotide comprising the nucleotide
sequence of SEQ ID No 14 from nucleotide 294 to nucleotide 311 or
its complement or said labeled nucleic acid probe comprising the
nucleotide sequence of SEQ ID No 15 from nucleotide 508 to
nucleotide 525 or its complement, wherein the first and second
oligonucleotide overlap by at least one nucleotide. The duplex or
triplex structure which is produced by this hybridization allows
selective probe cleavage with an enzyme (Cleavase.RTM.) leaving the
target sequence intact. The cleaved labeled probe is subsequently
detected, potentially via an intermediate step resulting in further
signal amplification.
[0331] A "kit" as used herein refers to a set of reagents for the
purpose of performing the method of the invention, more
particularly, the identification of the elite event EE-GM3 in
biological samples or the determination of the zygosity status of
EE-GM3 containing plant material. More particularly, a preferred
embodiment of the kit of the invention comprises at least one or
two specific primers, as described above for identification of the
elite event, or three specific primers for the determination of the
zygosity status. Optionally, the kit can further comprise any other
reagent described herein in the PCR Identification Protocol.
Alternatively, according to another embodiment of this invention,
the kit can comprise a specific probe, as described above, which
specifically hybridizes with nucleic acid of biological samples to
identify the presence of EE-GM3 therein. Optionally, the kit can
further comprise any other reagent (such as but not limited to
hybridizing buffer, label) for identification of EE-GM3 in
biological samples, using the specific probe.
[0332] The kit of the invention can be used, and its components can
be specifically adjusted, for purposes of quality control (e.g.,
purity of seed lots), detection of the presence or absence of the
elite event in plant material or material comprising or derived
from plant material, such as but not limited to food or feed
products.
[0333] As used herein, "sequence identity" with regard to
nucleotide sequences (DNA or RNA), refers to the number of
positions with identical nucleotides divided by the number of
nucleotides in the shorter of the two sequences. The alignment of
the two nucleotide sequences is performed by the Wilbur and Lipmann
algorithm (Wilbur and Lipmann, 1983, Proc. Nat. Acad. Sci. USA
80:726) using a window-size of 20 nucleotides, a word length of 4
nucleotides, and a gap penalty of 4. Computer-assisted analysis and
interpretation of sequence data, including sequence alignment as
described above, can, e.g., be conveniently performed using the
sequence analysis software package of the Genetics Computer Group
(GCG, University of Wisconsin Biotechnology Center). Sequences are
indicated as "essentially similar" when such sequences have a
sequence identity of at least about 75%, particularly at least
about 80%, more particularly at least about 85%, quite particularly
at least about 90%, especially at least about 95%, more especially
at least about 98%, or at least about 99%. It is clear that when
RNA sequences are said to be essentially similar or have a certain
degree of sequence identity with DNA sequences, thymidine (T) in
the DNA sequence is considered equal to uracil (U) in the RNA
sequence. Also, it is clear that small differences or mutations may
appear in DNA sequences over time and that some mismatches can be
allowed for the event-specific primers or probes of the invention,
so any DNA sequence indicated herein in any embodiment of this
invention for any 3' or 5' flanking DNA or for any insert or
foreign DNA or any primer or probe of this invention, also includes
sequences essentially similar to the sequences provided herein,
such as sequences hybridizing to or with at least 90%, 95%, 96%,
97%, 98%, or at least 99% sequence identity to the sequence given
for any 3' or 5' flanking DNA, for any primer or probe or for any
insert or foreign DNA of this invention.
[0334] The term "primer" as used herein encompasses any nucleic
acid that is capable of priming the synthesis of a nascent nucleic
acid in a template-dependent process, such as PCR. Typically,
primers are oligonucleotides from 10 to 30 nucleotides, but longer
sequences can be employed. Primers may be provided in
double-stranded form, though the single-stranded form is preferred.
Probes can be used as primers, but are designed to bind to the
target DNA or RNA and need not be used in an amplification
process.
[0335] The term "recognizing" as used herein when referring to
specific primers, refers to the fact that the specific primers
specifically hybridize to a nucleic acid sequence in the elite
event under the conditions set forth in the method (such as the
conditions of the PCR Identification Protocol), whereby the
specificity is determined by the presence of positive and negative
controls.
[0336] The term "hybridizing" as used herein when referring to
specific probes, refers to the fact that the probe binds to a
specific region in the nucleic acid sequence of the elite event
under standard stringency conditions. Standard stringency
conditions as used herein refers to the conditions for
hybridization described herein or to the conventional hybridizing
conditions as described by Sambrook et al., 1989 (Molecular
Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor
Laboratory Press, NY) which for instance can comprise the following
steps: 1) immobilizing plant genomic DNA fragments on a filter, 2)
prehybridizing the filter for 1 to 2 hours at 42.degree. C. in 50%
formamide, 5.times.SSPE, 2.times.Denhardt's reagent and 0.1% SDS,
or for 1 to 2 hours at 68.degree. C. in 6.times.SSC,
2.times.Denhardt's reagent and 0.1% SDS, 3) adding the
hybridization probe which has been labeled, 4) incubating for 16 to
24 hours, 5) washing the filter for 20 min. at room temperature in
1.times.SSC, 0.1% SDS, 6) washing the filter three times for 20
min. each at 68.degree. C. in 0.2.times.SSC, 0.1% SDS, and 7)
exposing the filter for 24 to 48 hours to X-ray film at -70.degree.
C. with an intensifying screen.
[0337] As used in herein, a biological sample is a sample of a
plant, plant material or products comprising plant material. The
term "plant" is intended to encompass soybean (Glycine max) plant
tissues, at any stage of maturity, as well as any cells, tissues,
or organs taken from or derived from any such plant, including
without limitation, any seeds, leaves, stems, flowers, roots,
single cells, gametes, cell cultures, tissue cultures or
protoplasts. "Plant material", as used herein refers to material
which is obtained or derived from a plant. Products comprising
plant material relate to food, feed or other products which are
produced using plant material or can be contaminated by plant
material. It is understood that, in the context of the present
invention, such biological samples are tested for the presence of
nucleic acids specific for EE-GM3, EE-GM1 and EE-GM2 implying the
presence of nucleic acids in the samples. Thus the methods referred
to herein for identifying elite event EE-GM3 and EE-GM2 or EE-GM3
and EE-GM1 in biological samples, relate to the identification in
biological samples of nucleic acids which comprise the elite
event.
[0338] As used herein "comprising" is to be interpreted as
specifying the presence of the stated features, integers, steps,
reagents or components as referred to, but does not preclude the
presence or addition of one or more features, integers, steps or
components, or groups thereof. Thus, e.g., a nucleic acid or
protein comprising a sequence of nucleotides or amino acids, may
comprise more nucleotides or amino acids than the actually cited
ones, i.e., be embedded in a larger nucleic acid or protein. A
chimeric gene comprising a DNA sequence which is functionally or
structurally defined, may comprise additional DNA sequences, such
as promoter and transcript termination sequences.
[0339] The present invention also relates to the development of a
stack of elite event EE-GM3 and elite event EE-GM1 or a stack of
elite event EE-GM3 and elite event EE-GM2 in soybean, to the plants
comprising a stack of these events, the progeny obtained from these
plants and to the plant cells, or plant material derived from
plants comprising these stacks. Plants comprising elite event
EE-GM3 and EE-GM1 or EE-GM3 and EE-GM2 can be obtained as described
in example 1. Stacks are obtained by crossing plants comprising
single events using conventional breeding methods and
identification of progeny thereof comprising two different
events.
[0340] Soybean plants or plant material comprising EE-GM3 and
EE-GM1 can be identified according to the PCR Identification
Protocol described for EE-GM3 and EE-GM1 in Example 2. Briefly,
soybean genomic DNA present in the biological sample is amplified
by PCR using a primer which specifically recognizes a sequence
within the 5' or 3' flanking sequence of EE-GM3 such as the primer
with the sequence of SEQ ID NO: 5, and a primer which recognizes a
sequence in the foreign DNA, such as the primer with the sequence
of SEQ ID NO: 4 and further using a primer which specifically
recognizes a sequence within the 5' or 3' flanking sequence of
EE-GM1 such as the primer with the sequence of SEQ ID NO: 16, and a
primer which recognizes a sequence in the foreign DNA, such as the
primer with the sequence of SEQ ID NO: 17.
[0341] Soybean plants or plant material comprising EE-GM3 and
EE-GM2 can be identified according to the PCR Identification
Protocol described for EE-GM3 and EE-GM2 in Example 2. Briefly,
soybean genomic DNA present in the biological sample is amplified
by PCR using a primer which specifically recognizes a sequence
within the 5' or 3' flanking sequence of EE-GM3 such as the primer
with the sequence of SEQ ID NO: 5, and a primer which recognizes a
sequence in the foreign DNA, such as the primer with the sequence
of SEQ ID NO: 4 and further using a primer which specifically
recognizes a sequence within the 5' or 3' flanking sequence of
EE-GM2 such as the primer with the sequence of SEQ ID NO: 18, and a
primer which recognizes a sequence in the foreign DNA, such as the
primer with the sequence of SEQ ID NO: 19.
[0342] DNA primers which amplify part of an endogenous soybean
sequence are used as positive control for the PCR amplification. If
upon PCR amplification, the material yields the fragments of the
expected sizes, the material contains plant material from a soybean
plant harboring elite event EE-GM3 and EE-GM1 or from a soybean
plant harboring elite event EE-GM3 and EE-GM2.
[0343] Plants harboring EE-GM3 and EE-GM1 or EE-GM3 and EE-GM2 are
characterized by their glyphosate tolerance, as well as by their
tolerance to HPPD inhibitors such as isoxaflutol and further by
their tolerance to glufosinate. Plants harboring the event stacks
are also characterized by having agronomical characteristics that
are comparable to commercially available varieties of soybean, in
the absence of herbicide application. It has been observed that the
presence of foreign DNA in the insertion regions of the soybean
plant genome described herein, confers particularly interesting
phenotypic and molecular characteristics to the plants comprising
this event.
[0344] One embodiment of this invention provides a combination or
elite events EE-GM3 and EE-GM1 and/or EE-GM2 in soybean plants,
obtainable by insertion of transgenes at specific locations in the
soybean genome, which elite events confers tolerance to glyphosate,
glufosinate and an HPPD inhibitor herbicide such as isoxaflutole on
such soybean plants, and wherein such elite events do not cause any
effect on the agronomic performance of such soybeans negatively
affecting the yield of such soybean plants, compared to isogenic
lines (as used herein, "isogenic lines" or "near-isogenic lines"
are soybean lines of the same genetic background but lacking the
transgenes, such as plants of the same genetic background as the
plant used for transformation, or segregating sister lines having
lost the transgenes). Particularly, the current invention provides
a combination of elite events EE-GM3 and EE-GM1 and/or EE-GM2 in
soybean plants, wherein the insertion or presence of said elite
event in the genome of such soybean plants does not cause an
increased susceptibility to disease, does not cause a yield drag,
or does not cause increased lodging, in such soybean plants, as
compared to isogenic lines. Hence, the current invention provides a
combination of elite events in soybean plants, designated as EE-GM3
and EE-GM1 and/or EE-GM2, which results in soybean plants that can
tolerate the application of glyphosate, glufosinate and an HPPD
inhibitor herbicide (either simultaneously or separately) without
negatively affecting the yield of said soybean plants compared to
isogenic lines, which soybean plants have no statistically
significant difference in their disease susceptibility, or lodging,
compared to isogenic soybean plants. These characteristics make the
current combination of elite events very interesting to control
glyphosate-resistant weeds in soybean fields, and can also be used
in approaches to prevent or delay further glyphosate resistance
development in soybean fields (e.g., by application of glyphosate
and isoxaflutole and/or glufosinate, or by application of
isoxaflutole and glyphosate and/or glufosinate, or by application
of glufosinate and glyphosate and/or isoxafulote, securing at least
2 or even 3 different modes of actions of herbicides applied on a
soybean field).
[0345] Provided herein is also a soybean plant or part thereof
comprising event EE-GM3 and elite event EE-GM1 or EE-GM2, wherein
representative soybean seed comprising event EE-GM3 has been
deposited under NCIMB accession number 41659, representative
soybean seed comprising elite event EE-GM1 has been deposited at
the NCIMB under accession number NCIMB 41658, representative seed
comprising elite event EE-GM2 has been deposited at the NCIMB under
accession number NCIMB 41660, representative soybean seed
comprising event EE-GM3 and EE-GM1 has been deposited at the ATCC
under accession number PTA-11041, and representative soybean seed
comprising event EE-GM3 and EE-GM2 has been deposited at the ATCC
under accession number PTA-11042.
[0346] Soybean plants or parts thereof comprising EE-GM3 and EE-GM1
or EE-GM3 and EE-GM2 may be obtained by combining the respective
elite events as can be found in the respective deposited seeds
through any means available in the art, including by crossing
plants from the deposited seeds, collecting the progeny thereof,
and identifying those progeny plants comprising the appropriate
combination of elite events. Further provided herein are seeds of
such plants, comprising such events, as well as a soybean product
produced from such seeds, wherein said soybean product comprises
event EE-GM3 and EE-GM1 or EE-GM2. Such soybean product can be or
can comprise meal, ground seeds, flour, flakes, etc. Particularly,
such soybean product comprises a nucleic acid that produces
amplicons diagnostic for event EE-GM3 and elite event EE-GM1 or
EE-GM2, such amplicons comprising SEQ ID No. 2 or 3, SEQ ID No. 14
or 15 and/or SEQ ID No. 12 or 13. Also provided herein is a method
for producing a soybean product, comprising obtaining soybean seed
comprising event EE-GM3 and elite event EE-GM1 or EE-GM2, and
producing such soybean product therefrom.
[0347] Also provided herein is a soybean plant, which is progeny of
any of the above soybean plants, and which comprises event EE-GM3
and EE-GM1 or EE-GM2.
[0348] Further provided herein is a method for producing a soybean
plant tolerant to glyphosate and/or glufosinate and/or isoxaflutole
herbicides, comprising introducing into the genome of such plant
event EE-GM3 and event EE-GM1 or EE-GM2, particularly by crossing a
first soybean plant containing event EE-GM3 with a soybean plant
comprising EE-GM1 and/or EE-GM2, and selecting a progeny plant
tolerant to glyphosate and/or glufosinate and/or isoxaflutole.
[0349] Also provided herein is a glyphosate and glufosinate and/or
isoxaflutole tolerant plant, particularly without yield drag, and
with acceptable agronomical characteristics, comprising a 2mEPSPS,
HPPD and PAT protein, and capable of producing an amplicon
diagnostic for events EE-GM3 and EE-GM1 or EE-GM3 and EE-GM2.
[0350] Further provided herein is a method for controlling weeds in
a field of soybean plants comprising events EE-GM3 and EE-GM1 or
EE-GM3 and EE-GM2, or a field to be planted with such soybean
plants, comprising treating the field with an effective amount of
an isoxaflutole-based, glyphosate-based and/or glufosinate-based
herbicide, wherein such plants are tolerant to such
herbicide(s).
[0351] Further provided herein is a soybean plant, cell, tissue or
seed, comprising EE-GM3 and EE-GM1, characterized by comprising in
the genome of its cells a nucleic acid sequence with at least 80%,
90%, 95% or 100% sequence identity to SEQ ID No. 2 from nucleotide
1431 to 1472 and a nucleic acid sequence with at least 80%, 90%,
95% or 100% sequence identity to SEQ ID No. 3 from nucleotide 220
to 261, or the complement of said sequences, and also a nucleic
acid sequence with at least 80%, 90%, 95% or 100% sequence identity
to SEQ ID No. 12 from nucleotide 199 to 220 and a nucleic acid
sequence with at least 80%, 90%, 95% or 100% sequence identity to
SEQ ID No. 13 from nucleotide 558 to 579, or the complement of said
sequences.
[0352] Also provided herein is a soybean plant, cell, tissue or
seed, comprising EE-GM3 and EE-GM2, characterized by comprising in
the genome of its cells a nucleic acid sequence with at least 80%,
90%, 95% or 100% sequence identity to SEQ ID No. 2 from nucleotide
1431 to 1472 and a nucleic acid sequence with at least 80%, 90%,
95% or 100% sequence identity to SEQ ID No. 3 from nucleotide 220
to 261, or the complement of said sequences, and also a nucleic
acid sequence with at least 80%, 90%, 95% or 100% sequence identity
to SEQ ID No. 14 from nucleotide 301 to 322 and a nucleic acid
sequence with at least 80%, 90%, 95% or 100% sequence identity to
SEQ ID No. 15 from nucleotide 497 to 518, or the complement of said
sequences.
[0353] The term "isoxaflutole", as used herein, refers to the
herbicide isoxaflutole [i.e.
(5-cyclopropyl-4-isoxazolyl)[2-(methylsulfonyl)-4-(trifluoromethyl)phenyl-
]methanone], the active metabolite thereof, diketonitrile, and any
mixtures or solutions comprising said compounds. HPPD inhibiting
herbicides useful for application on the plants comprising the
events of this invention are the diketonitriles, e.g.
2-cyano-3-cyclopropyl-1-(2-methylsulphonyl-4-trifluoromethylphenyl)-propa-
ne-1,3-dione and
2-cyano-1-[4-(methylsulphonyl)-2-trifluoromethylphenyl]-3-(1-methylcyclop-
ropyl)propane-1,3-fione; other isoxazoles; and the pyrazolinates,
e.g. topramezonc
[i.e.[3-(4,5-dihydro-3-isoxazolyl)-2-methyl-4-(methylsulfonyl)phenyl](5-h-
ydroxy-1-methyl-1H-pyrazol-4-yl)methanone], and pyrasulfotole
[(5-hydroxy-1,3-dimethylpyrazol-4-yl(2-mesyl-4-trifluaromethylphenyl)meth-
anone]; or pyrazofen
[2-[4-(2,4-dichlorobenzoyl)-1,3-dimethylpyrazol-5-yloxy]acetophenone].
[0354] In one embodiment of this invention, a field to be planted
with soybean plants containing the EE-GM3 event, can be treated
with an HPPD inhibitor herbicide, such as isoxaflutole (`IFT`),
before the soybean plants are planted or the seeds are sown, which
cleans the field of weeds that are killed by the HPPD inhibitor,
allowing for no-till practices, followed by planting or sowing of
the soybeans in that same pre-treated field later on (burndown
application using an HPPD inhibitor herbicide). The residual
activity of IFT will also protect the emerging and growing soybean
plants from competition by weeds in the early growth stages. Once
the soybean plants have a certain size, and weeds tend to
re-appear, glyphosate, or an HPPD inhibitor-glyphosate mixture, can
be applied as post-emergent herbicide over the top of the
plants.
[0355] In another embodiment of this invention, a field in which
seeds containing the EE-GM3 event were sown, can be treated with an
HPPD inhibitor herbicide, such as IFT, before the soybean plants
emerge but after the seeds are sown (the field can be made
weed-free before sowing using other means, typically conventional
tillage practices such as ploughing, chissel ploughing, or seed bed
preparation), where residual activity will keep the field free of
weeds killed by the herbicide so that the emerging and growing
soybean plants have no competition by weeds (pre-emergence
application of an HPPD inhibitor herbicide). Once the soybean
plants have a certain size, and weeds tend to re-appear,
glyphosate--or an HPPD inhibitor-glyphosate mixture--can be applied
as post-emergent herbicide over the top of the plants.
[0356] In another embodiment of this invention, plants containing
the EE-GM3 event, can be treated with an HPPD inhibitor herbicide,
such as IFT, over the top of the soybean plants (that have emerged
from the seeds that were sown), which cleans the field of weeds
killed by the HPPD inhibitor, which application can be together
with (e.g., in a spray tank mix), followed by or preceded by a
treatment with glyphosate as post-emergent herbicide over the top
of the plants (post-emergence application of an HPPD inhibitor
herbicide (with or without glyphosate)).
[0357] Also, in accordance with the current invention, soybean
plants harboring EE-GM3 and EE-GM1 or EE-GM2 may be treated with
the following insectides, herbicides or fungicides or soybean seeds
harboring EE-GM3 and EE-GM1 or EE-GM2 may be coated with a seed
coating comprising the following insectides, herbicides or
fungicides:
[0358] Soybean Herbicides:
[0359] Alachlor, Bentazone, Trifluralin, Chlorimuron-Ethyl,
Cloransulam-Methyl, Fenoxaprop, Fomesafen, Fluazifop, Glyphosate,
Imazamox, Imazaquin, Imazethapyr, (S-)Metolachlor, Metribuzin,
Pendimethalin, Tepraloxydim, Isoxaflutole, Glufosinate.
[0360] Soybean Insecticides:
[0361] Lambda-cyhalothrin, Methomyl, Parathion, Thiocarb,
Imidacloprid, Clothianidin, Thiamethoxam, Thiacloprid, Acetamiprid,
Dinetofuran, Flubendi amide, Rynaxypyr, Cyazypyr, Spinosad,
Spinotoram, Emamectin-Benzoate, Fipronil, Ethiprole, Deltamethrin,
.beta.-Cyfluthrin, gamma and lambda Cyhalothrin,
4-[[(6-Chlorpyridin-3-yl)methyl](2,2-difluorethyl)amino]furan-2(5H)-on,
Spirotetramat, Spinodiclofen, Triflumuron, Flonicamid, Thiodicarb,
beta-Cyfluthrin.
[0362] Soybean Fungicides:
[0363] Azoxystrobin, Cyproconazole, Epoxiconazole, Flutriafol,
Pyraclostrobin, Tebuconazole, Trifloxystrobin, Prothioconazole,
Tetraconazole.
[0364] The following examples describe the identification of elite
events EE-GM3, EE-GM1 and EE-GM2 and of plants containing a stack
of event EE-GM3 with EE-GM1 or EE-GM3 with EE-GM2 and the
development of tools for the specific identification of elite event
EE-GM3, EE-GM1 or EE-GM2 and stacks thereof in biological
samples.
[0365] Unless stated otherwise in the Examples, all recombinant
techniques are carried out according to standard protocols as
described in "Sambrook J and Russell D W (eds.) (2001) Molecular
Cloning: A Laboratory Manual, 3rd Edition, Cold Spring Harbor
Laboratory Press, New York" and in "Ausubel F A, Brent R, Kingston
R E, Moore D D, Seidman J G, Smith J A and Struhl K (eds.) (2006)
Current Protocols in Molecular Biology. John Wiley & Sons, New
York".
[0366] Standard materials and references are described in "Croy R D
D (ed.) (1993) Plant Molecular Biology LabFax, BIOS Scientific
Publishers Ltd., Oxford and Blackwell Scientific Publications,
Oxford" and in "Brown TA, (1998) Molecular Biology LabFax, 2nd
Edition, Academic Press, San Diego". Standard materials and methods
for polymerase chain reactions (PCR) can be found in "McPherson M J
and WOller S G (2000) PCR (The Basics), BIOS Scientific Publishers
Ltd., Oxford" and in "PCR Applications Manual, 3rd Edition (2006),
Roche Diagnostics GmbH, Mannheim or
www.roche-applied-science.com".
[0367] It should be understood that a number of parameters in any
lab protocol such as the PCR protocols in the below Examples may
need to be adjusted to specific laboratory conditions, and may be
modified slightly to obtain similar results. For instance, use of a
different method for preparation of DNA or the selection of other
primers in a PCR method may dictate other optimal conditions for
the PCR protocol. These adjustments will however be apparent to a
person skilled in the art, and are furthermore detailed in current
PCR application manuals.
[0368] In the description and examples, reference is made to the
following sequences: [0369] SEQ ID No. 1: SalI fragment nucleotide
sequence of vector pSF10. [0370] SEQ ID No. 2: nucleotide sequence
comprising the 5' region flanking the foreign DNA comprising the
herbicide tolerance genes in EE-GM3. [0371] SEQ ID No. 3:
nucleotide sequence comprising the 3' region flanking the foreign
DNA comprising the herbicide tolerance genes in EE-GM3. [0372] SEQ
ID No. 4: primer SOY028 [0373] SEQ ID No. 5: primer SOY029 [0374]
SEQ ID No. 6: primer SMP187 [0375] SEQ ID No. 7: primer STV019
[0376] SEQ ID No. 8: nucleotide sequence of the amplicon [0377] SEQ
ID No. 9: primer 1 for amplification of control fragment (SOY01)
[0378] SEQ ID No. 10: primer 2 for amplification of control
fragment (SOY02) [0379] SEQ ID No. 11: nucleotide sequence of
pB2/P35SAcK [0380] SEQ ID No. 12: nucleotide sequence comprising
the 5' region flanking the foreign DNA in EE-GM1 [0381] SEQ ID No.
13: nucleotide sequence comprising the 3' region flanking the
foreign DNA in EE-GM1 [0382] SEQ ID No. 14: nucleotide sequence
comprising the 5' region flanking the foreign DNA in EE-GM2 [0383]
SEQ ID No. 15: nucleotide sequence comprising the 3' region
flanking the foreign DNA in EE-GM2 [0384] SEQ ID No. 16: primer
SOY06 [0385] SEQ ID No. 17: primer SOY07 [0386] SEQ ID No. 18:
primer SOY09 [0387] SEQ ID No. 19: primer SOY010 [0388] SEQ ID No.
20: nucleotide sequence of a foreign DNA and plant flanking
sequences in EE-GM3 [0389] SEQ ID No. 21: primer SHA130 [0390] SEQ
ID No. 22: primer SHA178
EXAMPLES
1. Transformation of Glycine max with Herbicide Tolerance Genes
[0391] 1.1. Description of the Foreign DNA Comprising the 2mEPSPS
and HPPD-Pf-W336 Chimeric Genes
[0392] Plasmid pSF10 is a pUC19 derived cloning vector which
contains a chimeric 2mepsps gene and a chimeric hppd-Pf-W336 gene
located on a SalI fragment of about 7.3 kb. A full description of
the DNA comprised between the two SalI restriction sites is given
in Table 1 below. The nucleotide sequence is represented in SEQ ID
No. 1.
TABLE-US-00001 TABLE 1 Nucleotide positions of the DNA comprised
between the SalI restriction sites of pSF10 (SEQ ID No 1)
Nucleotide positions Orientation Description and references 188-479
complement 3'nos: sequence including the 3' untranslated region of
the nopaline synthase gene from the T-DNA of pTiT37 of
Agrobacterium tumefaciens (Depicker et al., 1982, Journal of
Molecular and Applied Genetics, 1, 561-573) 480-1556 complement
hppdPf W336: the coding sequence of the 4- hydroxyphenylpyruvate
dioxygenase of Pseudomonas fluorescens strain A32 modified by the
replacement of the amino acid Glycine 336 with a Tryptophane, as
described by Boudec et al. (2001) U.S. Pat. No. 6,245,968 B1
1557-1928 complement TPotp Y: coding sequence of an optimized
transit peptide derivative (position 55 changed into Tyrosine),
containing sequence of the RuBisCO small subunit genes of Zea mays
(corn) and Helianthus annuus (sunflower), as described by Lebrun et
al. (1996) U.S. Pat. No. 5,510,471 1929-2069 complement 5'tev:
sequence including the leader sequence of the tobacco etch virus as
described by Carrington and Freed (1990) Journal of Virology, 64,
1590-1597 2070-3359 complement Ph4a748 ABBC: sequence including the
promoter region of the histone H4 gene of Arabidopsis thaliana,
containing an internal duplication (Chaboute et al., 1987) Plant
Molecular Biology, 8, 179-191. 3360-4374 Ph4a748: sequence
including the promoter region of the histone H4 gene of Arabidopsis
thaliana (Chaboute et al., 1987) Plant Molecular Biology, 8,
179-191. 4375-4855 intron1 h3At: first intron of gene II of the
histone H3.III variant of Arabidopsis thaliana (Chaubet et al.,
1992) Journal of Molecular Biology, 225, 569-574. 4856-5227 TPotp
C: coding sequence of the optimized transit peptide, containing
sequence of the RuBisCO small subunit genes of Zea mays (corn) and
Helianthus annuus (sunflower), as described by Lebrun et al. (1996)
U.S. Pat. No. 5,510,471 5228-6565 2mepsps: the coding sequence of
the double- mutant 5-enol-pyruvylshikimate-3-phosphate synthase
gene of Zea mays (corn) (Lebrun et al., 1997) WO9704103-A 1
6566-7252 3'histonAt: sequence including the 3' untranslated region
of the histone H4 gene of Arabidopsis thaliana (Chaboute et al.,
1987) Plant Molecular Biology, 8, 179-191.
1.2. Event EE-GM3
[0393] The HPLC purified SalI-linearized pSF10 fragment of about
7.3 kb (containing the 2mEPSPS glyphosate-tolerance gene and the
HPPD inhibitor tolerance gene HPPD-Pf-W336) was used to obtain
transformed soybean plants by means of direct gene transfer into
cells of soybean type Jack (Nickell, C. D., G. R. Noel, D. J.
Thomas, and R. Waller. Registration of `Jack` soybean. Crop Sci
1365. 30.1990), followed by regeneration of transformed plant cells
into transgenic fertile soybean plants.
1.2.1 Identification of Elite Event EE-GM3
[0394] Elite event EE-GM3 was selected based on an extensive
selection procedure based on good expression and stability of the
herbicide tolerance genes, and its compatibility with optimal
agronomic characteristics such as plant height, height to node,
stand, vigor, seed yield, were evaluated. Soybean plants containing
this event were selected from a wide range of different
transformation events obtained using the same chimeric genes.
Parameters used in the selection of this event were: a) acceptable
tolerance to isoxaflutole herbicide application in field trials, b)
acceptable tolerance to glyphosate herbicide application in field
trials, c) acceptable tolerance to combined application of
isoxaflutole and glyphosate herbicides in field trials, d) an
insertion of the herbicide tolerance transgenes at a single locus
in the soybean plant genome, with absence of vector backbone, e)
overall agronomy similar to the parent plants used for
transformation (maturity, lodging, disease susceptibility, etc.),
and f) no significant yield drag caused by the insertion of the
transforming DNA (as compared to an isogenic line without the
event, such as the plant line used for transformation, grown under
the same conditions).
[0395] At the T3 generation, a homozygous line of the soybean
transformation event EE-GM3 was selected for seed production.
Multi-location replicated agronomic field studies were conducted in
the regions of adaptation of the parent variety, Jack. Field
evaluations included herbicide tolerance and agronomic performance.
The agronomic performance of plants containing EE-GM3 was found
comparable to Jack (when no herbicides were applied).
[0396] The field evaluations also showed that plants carrying the
EE-GM3 event have: [0397] similar plant morphology and seed
characteristics compared to Jack, [0398] no change in response to
soybean diseases compared to Jack, and [0399] no changes in seed
germination or dormancy compared to Jack.
[0400] Seed (T1 or S1 generation) harvested from the initial
transformant (TO) plant (the plant transformed with the construct
so as to produce event EE-GM3) in the greenhouse were planted in
the field. Three blocks were planted and sprayed with 0, 2, or 4
kg/ha glyphosate. Seed was harvested from plants demonstrating the
desired level of tolerance to the herbicide, glyphosate.
[0401] Seeds (T2 generation) harvested from self-pollinated T1
plants grown in the field were sown "plant to row". Chi square
analysis of segregation data for rows (fully or partially tolerant)
and of individual plants within rows (tolerant or sensitive)
demonstrates the expected Mendelian inheritance of a single
insertion for EE-GM3.
[0402] Selection and seed increase continued until a line was
determined to be homozygous for transformation event EE-GM3 and
selected for core seed production in the fourth generation. Then,
T5 generation seed served as a candidate for the development of
different varieties. Plants in the sixth generation (T6 generation)
were crossed with conventional soybean breeding lines in an
introgression program designed to move the event into a broader
base of commercial soybean germplasm. F1 hybrid plants (EE-GM3
lines.times.conventional lines) were grown to maturity and the F2
seed was planted. Leaf samples of 901 F2 plants were analyzed by
PCR primers designed to identify the zygosity of the EE-GM3 insert.
The expected ratio of 1:2:1 for a single insertion segregation by
the rules of Mendel was observed.
[0403] The selected event EE-GM3 was introduced in different
commercial genetic backgrounds, and results of field trials on
different locations were compared. Plants were challenged with
glyphosate herbicide and/or isoxaflutole herbicide using different
treatments. The plants exhibited good herbicide tolerance. Hundreds
of different soybean cultivars containing event EE-GM3 were used in
an inheritance study, and herbicides were applied. Selected lines
from this trial were later increased in the field and also treated
with herbicide. From that trial, 50 selected lines were increased,
and these were also herbicide treated. The phytotoxicity scores for
the latter lines sprayed with isoxaflutole and glyphosate showed
some variability in response, but the range of responses among the
lines reflected similar variability as was observed across 4
replications of the EE-GM3 event in the original Jack background,
grown under the same treatment and environmental conditions. Hence,
tolerance to the relevant herbicides across a broad range of
germplasm was observed for plants comprising EE-GM3.
[0404] Furthermore, plants containing the event EE-GM3 had normal
leaf, flower and pod morphology, excellent fertility, and showed no
disease or abnormal insect susceptibility in multiple genetic
backgrounds. During introgression into multiple genetic backgrounds
no aberrant problems or abnormalities were observed.
[0405] In one season, a 10 location study was designed to compare
the agronomic performance of double herbicide tolerant soybean
comprising transformation event EE-GM3 to the transformation parent
variety, Jack and some non-transgenic soybean varieties. Using a
randomized complete block design, EE-GM3 plants were grown in
replicated plots with either conventional weed control or with the
intended herbicides, glyphosate and isoxaflutole. Plots with
soybean plants containing transformation event EE-GM3 were sprayed
with isoxaflutole herbicide at a target rate of 70 grams ai/Ha and
with glyphosate herbicide at a target rate of 1060 grams ai/Ha.
Herbicide application was made to these plants as a foliar spray at
about the V4-V5 plant growth stage. Agronomic observations were
made in the early, mid and late season. The plant density
(parameter; stand count) was higher for the Jack and the
non-transgenic variety plots than in the event EE-GM3 plots by one
standard deviation. The early stand count difference may have been
the result of seed lot quality, as the EE-GM3 planting seed was
produced in counter season nursery, while the seed of the
non-transgenic varieties was produced in the contiguous US, normal
production season. However, the number of days to achieve 50%
emergence and the plant vigor ratings were the same, indicating
that the seed lots were comparable for these performance
parameters. In the late season stand counts, Jack and the
non-transgenic varieties remained different by one standard
deviation from EE-GM3 plants. Plot yields of EE-GM3 event plants
were also lower than those of Jack by one standard deviation,
perhaps a result of the lower plant density of the EE-GM3 event
plots. The yield of the non-transgenic varieties was more than Jack
as could be expected because of the advancement in yield potential
found in more recent varieties.
[0406] In one trial, plant health ratings were made at three growth
stages: V4-5, R1 and full maturity. The first evaluation was
shortly after the intended herbicide application. At the time of
the final plant health evaluation, the EE-GM3-containing plants
sprayed with both herbicides had the same score as the unsprayed
Jack plants, or the unsprayed plants comprising EE-GM3. In ratings
by the agronomic staff, the herbicide-sprayed plants received a
health rating of 3-4 (moderate injury) at the V4-5 and R1 plant
growth stages. The unsprayed plants (untransformed Jack or soybean
plants containing EE-GM3) were rated as 4.6-4.8 (rating of 5
indicates no injury). At the final plant health rating, all the
plots received the same rating of 5 (no injury).
[0407] One trial season was one of exceptional rainfall and crop
injury in the EE-GM3 plants following the intended herbicide was
more obvious than observed in other seasons. The field evaluations
also included monitoring of the fitness characters (reproduction,
disease resistance, fecundity, seed dispersal, dormancy,
persistence). For the reproductive characteristics; days to
emergence, days to 50% flowering and days to 90% pods maturing, the
EE-GM3 and Jack plants were not different. No difference was noted
in the reaction to natural infestations of plant diseases and
insect pests. Although EE-GM3 produced less ultimate yield than
Jack, no difference in fecundity (100 seed weight) was found. The
assessment of seed dispersal parameters (pod shattering and plant
lodging) found EE-GM3 and Jack to have the same pod shattering
score, but found EE-GM3 plants to be less prone to lodging.
Evaluation of seed harvested from the 10 locations found no
concerns raised by germination or dormancy testing.
[0408] In these trials during the season with exceptional rainfall,
the final yield of EE-GM3 plants, regardless of the weed control
treatment, was less than the yield of Jack by one standard
deviation (perhaps a result of the lower plant density of the
EE-GM3 event plots). In the exceptionally wet season, crop injury
(bleaching in 10-30% of the crop area) was reported for EE-GM3
plots up to six weeks following foliar application of the
glyphosate and isoxaflutole herbicides. However, by maturity, "no
injury" plant health ratings were assigned to all the plots.
Replicated multi-location field trials with EE-GM3 introgressed in
elite soybean cultivar background, when compared to near-isogenic
sister lines not containing the transgene, are expected to show no
yield difference between plants containing event EE-GM3 and the
near-isogenic lines (in the absence of herbicide treatment).
[0409] Further, in a replicated field trial significant crop
tolerance (bleaching of less than 10%) was found in soybean plants
comprising EE-GM3 when treated either pre- or post-emergence with
IFT (70 gr ai/ha with 0.5% NIS, Agridex), but also significant crop
tolerance (bleaching of less than 10%) was found in soybean plants
comprising EE-GM3 when treated with a post-emergence application of
pyrasulfotole (35 gr ai/ha with 0.5% NIS, Agridex), another HPPD
inhibitor herbicide.
1.2.2 Identification of the Flanking Regions and Foreign DNA of
Elite Event EE-GM3
[0410] The sequence of the regions flanking the foreign DNA
comprising the herbicide tolerance genes in the EE-GM3 elite event
was determined to be as follows:
1.2.2.1. Right (5') Flanking Region
[0411] The fragment identified as comprising the 5' flanking region
was sequenced and its nucleotide sequence is represented in SEQ ID
No. 2. The sequence between nucleotide 1 and 1451 corresponds to
plant DNA, while the sequence between nucleotide 1452 and 1843
corresponds to foreign DNA.
1.2.2.2. Left (3') Flanking Region
[0412] The fragment identified as comprising the 3' flanking region
was sequenced and its nucleotide sequence is represented in SEQ ID
No. 3. The sequence between nucleotide 1 and 240 corresponds to
foreign DNA, while the sequence between nucleotide 241 and 1408
corresponds to plant DNA.
1.2.2.3. Foreign DNA Comprising the Herbicide Tolerance Genes of
EE-GM3
[0413] Using different molecular techniques, it has been determined
that the foreign DNA of elite event EE-GM3 comprising the herbicide
tolerance genes contains two partial 3' histonAt sequences in a
head-to-head orientation, followed by 2 almost complete copies of
the SalI fragment of pSF10 arranged in head-to-tail orientation
(see FIG. 1).
[0414] The foreign DNA comprising the herbicide tolerance genes of
EE-GM3 thus contains in order the following sequences: [0415] from
nucleotide 1 to nucleotide 199: the nucleotide sequence
corresponding to complement of the nucleotide sequence of SEQ ID 1
from nt 6760 to nt 6958; [0416] from nucleotide 200 to nucleotide
624: the nucleotide sequence corresponding to the nucleotide
sequence of SEQ ID 1 from nt 6874 to nt 7298; [0417] from
nucleotide 625 to nucleotide 7909: the nucleotide sequence
corresponding to the nucleotide sequence of SEQ ID 1 from nt 7 to
nt 7291; [0418] from nucleotide 7910 to nucleotide 15163: the
nucleotide sequence corresponding to the nucleotide sequence of SEQ
ID 1 from nt 12 to nt 7265; and [0419] from nucleotide 15164 to
nucleotide 15187: the nucleotide sequence corresponding to the
nucleotide sequence of SEQ ID 3 from nt 217 to nt 240 (this
sequence does not correspond to either pSF10 plasmid DNA or wt
plant DNA and therefore is designated filler DNA). This foreign DNA
is preceded immediately upstream and contiguous with the foreign
DNA by the 5' flanking sequence of SEQ ID No 2 from nucleotide 1 to
1451 and is followed immediately downstream and contiguous with the
foreign DNA by the 3' flanking sequence of SEQ ID No 3 from
nucleotide 241 to nucleotide 1408.
[0420] Confirmed full DNA sequencing of the foreign DNA and
flanking DNA sequences in EE-GM3 resulted in the sequence reported
in SEQ ID No. 20. In this sequence, the inserted DNA is from
nucleotide position 1452 to nucleotide position 16638, and the 2
almost complete copies from pSF10 arranged in head-to-tail
orientation are from nucleotide position 2257 to nucleotide
position 16601. The 5' flanking DNA sequence in SEQ ID No. 20 is
the sequence from nucleotide position 1 to nucleotide position 1451
in SEQ ID No. 20, and the 3' flanking DNA sequence in SEQ ID No. 20
is the sequence from nucleotide position 16639 to nucleotide
position 17806 in SEQ ID No. 20.
1.3. Description of the Foreign DNA Comprising the
Phosphinothricinacetyltransferase Chimeric Genes
[0421] Plasmid pB2/P35SAcK is a pUC19 derived cloning vector which
contains a chimeric pat gene. A description of the vector is given
in Table 2 below. The nucleotide sequence thereof is represented in
SEQ ID No. 11.
TABLE-US-00002 TABLE 2 Nucleotide positions of constituents of
pB2/P35SAcK (SEQ ID No 11) Nucleotide positions Description and
references 461-1003 35S promotor from Cauliflower Mosaic Virus
1004-1011 Synthetic polylinker derived sequences 1012-1563
Synthetic pat gene (amino acid sequence from Streptomyces
viridochromogenes) 1564-1581 Synthetic polylinker derived sequences
1582-1784 35S terminator from Cauliflower Mosaic Virus
1.4. Event EE-GM1
1.4.1 Identification of EE-GM1
[0422] Herbicide-resistant soybean was developed by transformation
of soybean with vector pB2/P35SAcK using direct gene transfer.
[0423] Elite event EE-GM1 was selected based on an extensive
selection procedure based on good expression and stability of the
herbicide resistance gene and its compatibility with optimal
agronomic characteristics.
1.4.2 Identification of the Flanking Regions and Foreign DNA of
Elite Event EE-GM1
1.4.2.1. Right (5') Flanking Region
[0424] The fragment identified as comprising the 5' flanking region
was sequenced and its nucleotide sequence is represented in SEQ ID
No. 12. The sequence between nucleotide 1 and 209 corresponds to
plant DNA, while the sequence between nucleotide 210 and 720
corresponds to foreign DNA.
1.4.2.2. Left (3') Flanking Region
[0425] The fragment identified as comprising the 3' flanking region
was sequenced and its nucleotide sequence is represented in SEQ ID
No. 13. The sequence between nucleotide 1 and 568 corresponds to
foreign DNA, while the sequence between nucleotide 569 and 1000
corresponds to plant DNA.
1.4.2.3. Foreign DNA Comprising the Herbicide Tolerance Genes of
EE-GM1
[0426] Using different molecular techniques, it has been determined
that the foreign DNA of elite event EE-GM1 comprising the herbicide
tolerance gene comprises two copies of the chimeric pat gene in a
direct repeat structure (see FIG. 3).
[0427] The foreign DNA comprising the herbicide tolerance genes of
EE-GM1 thus contains in order the following sequences: [0428] from
nucleotide 1 to nucleotide 3122: the nucleotide sequence
corresponding to the nucleotide sequence of SEQ ID 11 from nt 340
to nt 3461; [0429] from nucleotide 3123 to nucleotide 3458: the
nucleotide sequence corresponding to the complement of the
nucleotide sequence of SEQ ID 11 from nt 1 to nt 336; [0430] from
nucleotide 3459 to nucleotide 4073: the nucleotide sequence
corresponding to the complement of the nucleotide sequence of SEQ
ID 11 from nt 3462 to nt 4076; and [0431] from nucleotide 4074 to
nucleotide 6780: the nucleotide sequence corresponding to the
nucleotide sequence of SEQ ID 11 from nt 337 to nt 3043; and [0432]
from nucleotide 6781 to nucleotide 6790: the nucleotide sequence
corresponding to the nucleotide sequence of SEQ ID 13 from nt 559
to nt 568 (this sequence does not correspond to either plasmid DNA
or wt plant DNA and therefore is designated filler DNA).
[0433] This foreign DNA of EE-GM1 is preceded immediately upstream
and contiguous with the foreign DNA at the 5' flanking sequence of
SEQ ID No 12 from nucleotide 1 to 209 and is followed immediately
downstream and contiguous with the foreign DNA at the 3' flanking
sequence of SEQ ID No 13 from nucleotide 569 to nucleotide
1000.
1.5. Event EE-GM2
[0434] Herbicide-resistant soybean was developed by transformation
of soybean with vector pB2/P35SAcK using direct gene transfer.
[0435] Elite event EE-GM2 was selected based on an extensive
selection procedure based on good expression and stability of the
herbicide resistance gene and its compatibility with optimal
agronomic characteristics.
1.5.1. Identification of the Flanking Regions and Foreign DNA of
Elite Event EE-GM2
1.5.1.1. Right (5') Flanking Region
[0436] The fragment identified as comprising the 5' flanking region
was sequenced and its nucleotide sequence is represented in SEQ ID
No. 14. The sequence between nucleotide 1 and 311 corresponds to
plant DNA, while the sequence between nucleotide 312 and 810
corresponds to foreign DNA.
1.5.1.2. Left (3') Flanking Region
[0437] The fragment identified as comprising the 3' flanking region
was sequenced and its nucleotide sequence is represented in SEQ ID
No. 15. The sequence between nucleotide 1 and 507 corresponds to
foreign DNA, while the sequence between nucleotide 569 and 1880
corresponds to plant DNA.
1.5.1.3. Foreign DNA Comprising the Herbicide Tolerance Genes of
EE-GM2
[0438] Using different molecular techniques, it has been determined
that the foreign DNA of elite event EE-GM2 comprising the herbicide
tolerance gene comprises one copy of the chimeric pat gene (see
FIG. 4).
[0439] The foreign DNA comprising the herbicide tolerance genes of
EE-GM2 thus contains in order the following sequences: [0440] from
nucleotide 1 to nucleotide 391: the nucleotide sequence
corresponding to the nucleotide sequence of SEQ ID 11 from nt 3458
to nt 3848; and [0441] from nucleotide 392 to nucleotide 3436: the
nucleotide sequence corresponding to the nucleotide sequence of SEQ
ID 11 from nt 413 to nt 3457.
[0442] This foreign DNA of EE-GM2 is preceded immediately upstream
and contiguous with the foreign DNA at the 5' flanking sequence of
SEQ ID No 14 from nucleotide 1 to 311 and is followed immediately
downstream and contiguous with the foreign DNA at the 3' flanking
sequence of SEQ ID No 15 from nucleotide 508 to nucleotide
1880.
2. Development of Polymerase Chain Reaction Identification
Protocols for EE-GM3
2.1. Primers
[0443] Specific primers were developed which recognize sequences
within the elite event.
[0444] A primer was developed which recognizes a sequence within
the 3' flanking region of EE-GM3. A second primer was then selected
within the sequence of the foreign DNA so that the primers span a
sequence of about 263 nucleotides. The following primers were found
to give particularly clear and reproducible results in a PCR
reaction on EE-GM3 DNA:
TABLE-US-00003 SOY028: (SEQ ID No.: 4)
5'-ATC.gCT.TTA.ACg.TCC.CTC.Ag-3 (target: insert DNA) SOY029: (SEQ
ID No.: 5) 5'-CAA.ggC.CTC.gAg.ATT.ATC-3' (target: plant DNA)
[0445] Primers targeting an endogenous sequence are preferably
included in the PCR cocktail. These primers serve as an internal
control in unknown samples and in the DNA positive control. A
positive result with the endogenous primer-pair (presence of an PCR
amplified fragment of 413 bp) demonstrates that there is ample DNA
of adequate quality in the genomic DNA preparation for a PCR
product to be generated. The endogenous primers were selected to
recognize the endogenous actin soybean gene:
TABLE-US-00004 SOY01 (SEQ ID No.: 9)
5'-gTC.AgC.CAC.ACA.gTg.CCT.AT-3' SOY02 (SEQ ID No.: 10)
5'-gTT.ACC.gTA.CAg.gTC.TTT.CC-3'
2.2. Amplified Fragments
[0446] The expected amplified fragments in the PCR reaction
are:
For primer pair SOY01-SOY02: 413 bp (endogenous control) For primer
pair SOY028-SOY029: 263 bp (EE-GM3 elite event)
2.3. Template DNA
[0447] Template DNA was prepared from a leaf punch according to
Edwards et al. (Nucleic Acid Research, 19, p 1349, 1991). When
using DNA prepared with other methods, a test run utilizing
different amounts of template should be done. Usually 50 ng of
genomic template DNA yields the best results.
2.4. Assigned Positive and Negative Controls
[0448] To avoid false positives or negatives, it was determined
that the following positive and negative controls should be
included in a PCR run: [0449] Master Mix control (DNA negative
control). This is a PCR in which no DNA is added to the reaction.
When the expected result, no PCR products, is observed this
indicates that the PCR cocktail was not contaminated with target
DNA. [0450] A DNA positive control (genomic DNA sample known to
contain the transgenic sequences). Successful amplification of this
positive control demonstrates that the PCR was run under conditions
which allow for the amplification of target sequences. [0451] A
wild-type DNA control. This is a PCR in which the template DNA
provided is genomic DNA prepared from a non-transgenic plant. When
the expected result, no amplification of a transgene PCR product
but amplification of the endogenous PCR product, is observed this
indicates that there is no detectable transgene background
amplification in a genomic DNA sample.
2.5. PCR Conditions
[0452] Optimal results were obtained under the following conditions
(In describing the various conditions for optimal results is meant
to provide examples of such conditions. Clearly one skilled in the
art could vary conditions, reagents and parameters such as using
other Taq polymerases, and achieve desirable results): [0453] the
PCR mix for 25 .mu.l reactions contains: [0454] 20 ng template DNA
[0455] 2.5 .mu.l 10.times. Amplification Buffer (supplied by the
manufacturer with the Taq polymerase) [0456] 0.5 .mu.l 10 mM dNTP's
[0457] 0.4 .mu.l SOY01 (10 pmoles/.mu.l) [0458] 0.4 .mu.l SOY02 (10
pmoles/.mu.l) [0459] 0.7 .mu.l SOY028 (10 pmoles/.mu.l) [0460] 0.7
.mu.l SOY029 (10 pmoles/.mu.l) [0461] 0.1 .mu.l Taq DNA polymerase
(5 units/.mu.l) [0462] water up to 25 .mu.l [0463] the
theimocycling profile to be followed for optimal results is the
following: [0464] 4 min. at 95.degree. C. [0465] Followed by: 1
min. at 95.degree. C. [0466] 1 min at 57.degree. C. [0467] 2 min at
72.degree. C. [0468] For 5 cycles [0469] Followed by: 30 sec. at
92.degree. C. [0470] 30 sec. at 57.degree. C. [0471] 1 min. at
72.degree. C. [0472] For 25 cycles [0473] Followed by: 10 minutes
at 72.degree. C.
2.6. Agarose Gel Analysis
[0474] To optimally visualize the results of the PCR it was
determined that between 10 and 20 .mu.l of the PCR samples should
be applied on a 1.5% agarose gel (Tris-borate buffer) with an
appropriate molecular weight marker (e.g. 100 bp ladder
Pharmacia).
2.7. Validation of the Results
[0475] It was determined that data from transgenic plant DNA
samples within a single PCR run and a single PCR cocktail should
not be acceptable unless 1) the DNA positive control shows the
expected PCR products (transgenic and endogenous fragments), 2) the
DNA negative control is negative for PCR amplification (no
fragments) and 3) the wild-type DNA control shows the expected
result (endogenous fragment amplification).
[0476] When following the PCR Identification Protocol for EE-GM3 as
described above, lanes showing visible amounts of the transgenic
and endogenous PCR products of the expected sizes, indicate that
the corresponding plant from which the genomic template DNA was
prepared, has inherited the EE-GM3 elite event. Lanes not showing
visible amounts of either of the transgenic PCR products and
showing visible amounts of the endogenous PCR product, indicate
that the corresponding plant from which the genomic template DNA
was prepared, does not comprise the elite event. Lanes not showing
visible amounts of the endogenous and transgenic PCR products,
indicate that the quality and/or quantity of the genomic DNA didn't
allow for a PCR product to be generated. These plants cannot be
scored. The genomic DNA preparation should be repeated and a new
PCR run, with the appropriate controls, has to be performed.
2.8. Use of Discriminating PCR Protocol to Identify EE-GM3
[0477] Before attempting to screen unknowns, a test run, with all
appropriate controls, is performed. The developed protocol might
require optimization for components that may differ between labs
(template DNA preparation, Taq DNA polymerase, quality of the
primers, dNTP's, thermocyler, etc.).
[0478] Amplification of the endogenous sequence plays a key role in
the protocol. One has to attain PCR and thermocycling conditions
that amplify equimolar quantities of both the endogenous and the
transgenic sequence in a known transgenic genomic DNA template.
Whenever the targeted endogenous fragment is not amplified or
whenever the targeted sequences are not amplified with the same
ethidium bromide staining intensities, as judged by agarose gel
electrophoresis, optimization of the PCR conditions may be
required.
[0479] Leaf material from a number of soybean plants, some of which
comprising EE-GM3 were tested according to the above-described
protocol. Samples from elite event EE-GM3 and from soybean
wild-type were taken as positive and negative controls,
respectively.
[0480] FIG. 2 illustrates the result obtained with the elite event
PCR Identification Protocol for EE-GM3 on a number of soybean plant
samples. The samples in lanes 2 and 3 were found to contain elite
event EE-GM3 as the 263 bp band is detected, while the samples in
lanes 4 to 8 do not comprise EE-GM3. Lanes 6 and 7 comprise samples
from other soybean transformation events obtained using the same
herbicide tolerance chimeric genes; lane 8 contains DNA from wild
type soybean plants and lane 9 represents the negative control
(water) sample, lanes 1 and 10 represent the Molecular Weight
Marker (100 bp ladder).
2.9. dPCR Assay for EE-GM3 Detection in Bulked Seed
[0481] A discriminating PCR (dPCR) assay is set up to detect low
level presence of EE-GM3 in bulked seeds. A minimum level of 0.4%
(w/w) of transgenic seeds in a bulk of non transgenic seeds was
successfully detected under repeatable conditions. Therefore the
Limit of Detection is determined to be 0.4% (w/w).
[0482] The following primers are applied in this target PCR
reaction:
TABLE-US-00005 Forward primer targeted to the T-DNA sequence:
SHA130 (SEQ ID No. 12) 5'-CTA.TAT.TCT.ggT.TCC.AAT.TTA.TC-3' Reverse
primer targeted to the 3' flanking sequence: SMP178 (SEQ ID No. 13)
5'-TgA.ggC.ACg.TAT.TgA.TgA.CC-3'
[0483] The expected amplified fragment in the PCR reaction from
these primers is 115 bp.
[0484] The target PCR reaction is performed on approximately 200 ng
of template DNA prepared from ground bulked seed according to a
modified Gentra Puregene DNA purification extraction kit (Qiagen).
When using DNA prepared with other methods, a test run using
samples with known relative levels of EE-GM3 should be
performed.
[0485] A validated reference system PCR reaction, targeting an
endogenous sequence, should ideally be performed in a separate PCR
run to verify the suitability of the DNA sample for PCR analysis to
avoid false negative results.
[0486] For unknown test samples the PCR experiment should ideally
include the appropriate positive and negative control samples,
i.e.: [0487] Master Mix control (DNA negative control). This is a
PCR in which no DNA is added to the reaction. When the expected
result (no PCR product) is observed for both the target and the to
reference system reaction this indicates that the PCR cocktail was
not contaminated with target DNA. [0488] A DNA positive control
(genomic DNA sample known to contain the transgenic sequences).
Successful amplification of this positive control demonstrates that
the PCR was run under conditions which allow for the amplification
of target sequences. [0489] Also a wild-type DNA control can be
added in this PCR. This is a PCR in which the template DNA provided
is genomic DNA prepared from a non-transgenic plant. When the
expected result, no amplification of a transgene PCR product but
amplification of the endogenous PCR product, is observed this
indicates that there is no detectable transgene background
amplification in a genomic DNA sample.
[0490] Optimal results are obtained under the following conditions:
[0491] the PCR mix for 25 .mu.l reactions contains: [0492] 200 ng
template DNA [0493] 5 .mu.l 5.times. Reaction Buffer [0494] 0.25
.mu.l 20 mM dNTP's [0495] 0.7 .mu.l SHA130 (10 pmoles/l) [0496] 0.4
.mu.l SMP178 (10 pmoles/l) [0497] 0.1 .mu.l GO-Taq DNA polymerase
(5 units/l) [0498] Add water up to 25 ml [0499] the thermocycling
profile to be followed for optimal results is the following: [0500]
4 min. at 95.degree. C. [0501] Followed by: 1 min. at 95.degree. C.
[0502] 1 min. at 57.degree. C. [0503] 2 min. at 72.degree. C.
[0504] For 5 cycles [0505] Followed by: 30 sec. at 92.degree. C.
[0506] 30 sec. at 57.degree. C. [0507] 1 min. at 72.degree. C.
[0508] For 30 cycles [0509] Followed by: 10 minutes at 72.degree.
C.
[0510] To optimally visualize the results of the PCR it was
determined that 25 .mu.l of the PCR product should be applied on a
1.5% agarose gel (Tris-borate buffer) with an appropriate molecular
weight marker (e.g. 50 bp ladder).
[0511] When following the PCR method as described above, lanes
showing visible amounts of the target and reference system PCR
products of the expected sizes, indicate that the test sample from
which the genomic template DNA was prepared, contained levels of
EE-GM3 elite event above the detection limit of the target
reaction
[0512] Lanes not showing visible amounts of the target PCR products
but showing visible amounts of the reference system PCR product,
indicate that the test sample from which the genomic template DNA
was prepared, contained levels of EE-GM3 elite event below the
detection limit of the target reaction
[0513] Lanes not showing visible amounts of the endogenous and
transgenic PCR products, indicate that the quality and/or quantity
of the genomic DNA didn't allow for a PCR product to be
generated.
[0514] These plants cannot be scored. The genomic DNA preparation
should be repeated and a new PCR run, with the appropriate
controls, has to be performed.
3. Use of a Specific Integration Fragment as a Probe for Detection
of Material Comprising EE-GM3
[0515] A specific integration fragment of EE-GM3 is obtained by PCR
amplification using specific primers SOY028 (SEQ ID No. 4) and
SOY029 (SEQ ID No. 5) yielding an amplicon with the nucleotide
sequence of SEQ ID No 8 or by chemical synthesis and is labeled.
This integration fragment is used as a specific probe for the
detection of EE-GM3 in biological samples. Nucleic acid is
extracted from the samples according to standard procedures. This
nucleic acid is then contacted with the specific probe under
hybridization conditions which are optimized to allow formation of
a hybrid. The formation of the hybrid is then detected to indicate
the presence of EE-GM3 nucleic acid in the sample. Optionally, the
nucleic acid in the samples is amplified using the specific primers
prior to contact with the specific probe. Alternatively, the
nucleic acid is labeled prior to contact with the specific probe
instead of the integration fragment. Optionally, the specific probe
is attached to a solid carrier (such as, but not limited to a
filter, strip or beads), prior to contact with the samples.
4. Polymerase Chain Reaction Identification Protocol for EE-GM1
4.1. Primers
[0516] Specific primers were developed which recognize sequences
within the elite event. More particularly, a primer was developed
which recognizes a sequence within the 5' flanking region of
EE-GM1. A second primer was then selected within the sequence of
the foreign DNA so that the primers span a sequence of about 183
nucleotides. The following primers were found to give particularly
clear and reproducible results in a PCR reaction on EE-GM1 DNA:
TABLE-US-00006 SOY06: (SEQ ID No.: 16)
5'-ggC.gTT.CgT.AgT.gAC.TgA.gg-3' (target: plant DNA) SOY07: (SEQ ID
No.: 17) 5'-gTT.TTA.CAA.CgT.CgT.gAC.Tgg-3' (target: insert DNA)
[0517] Primers targeting an endogenous sequence are preferably
included in the PCR cocktail. These primers serve as an internal
control in unknown samples and in the DNA positive control. A
positive result with the endogenous primer-pair demonstrates that
there is ample DNA of adequate quality in the genomic DNA
preparation for a PCR product to be generated. The endogenous
primers were selected to recognize a housekeeping gene in Glycine
max:
TABLE-US-00007 SOY01: (SEQ ID No.: 9)
5'-gTC.AgC.CAC.ACA.gTg.CCT.AT-3' (located in Glycine max actin 1
gene (Accession J01298)) SOY02: (SEQ ID No.: 10)
5'-gTT.ACC.gTA.CAg.gTC.TTT.CC-3' (located in Glycine max actin 1
gene (Accession J01298))
4.2. Amplified Fragments
[0518] The expected amplified fragments in the PCR reaction
are:
[0519] For primer pair SOY01-SOY02: 413 bp (endogenous control)
[0520] For primer pair SOY06-SOY07: 183 bp (EE-GM1 elite Event)
4.3. Template DNA
[0521] Template DNA was prepared from a leaf punch according to
Edwards et al. (Nucleic Acid Research, 19, p 1349, 1991). When
using DNA prepared with other methods, a test run utilizing
different amounts of template should be done. Usually 50 ng of
genomic template DNA yields the best results.
4.4. Assigned Positive and Negative Controls
[0522] To avoid false positives or negatives, it was determined
that the following positive and negative controls should be
included in a PCR run: [0523] Master Mix control (DNA negative
control). This is a PCR in which no DNA is added to the reaction.
When the expected result, no PCR products, is observed this
indicates that the PCR cocktail was not contaminated with target
DNA. [0524] A DNA positive control (genomic DNA sample known to
contain the transgenic sequences). Successful amplification of this
positive control demonstrates that the PCR was run under conditions
which allow for the amplification of target sequences. [0525] A
wild-type DNA control. This is a PCR in which the template DNA
provided is genomic DNA prepared from a non-transgenic plant. When
the expected result, no amplification of a transgene PCR product
but amplification of the endogenous PCR product, is observed this
indicates that there is no detectable transgene background
amplification in a genomic DNA sample.
4.5. PCR Conditions
[0526] Optimal results were obtained under the following
conditions: [0527] the PCR mix for 25 .mu.l reactions contains:
[0528] 2.5 .mu.l template DNA [0529] 2.5 .mu.l 10.times.
Amplification Buffer (supplied with Taq polymerase) [0530] 0.5
.mu.l 10 mM dNTP's [0531] 0.5 .mu.l SOY06 (10 pmoles/.mu.l) [0532]
0.5 .mu.l SOY07 (10 pmoles/.mu.l) [0533] 0.25 .mu.l SOY01 (10
pmoles/.mu.l) [0534] 0.25 .mu.l SOY02 (10 pmoles/.mu.l) [0535] 0.1
.mu.l Taq DNA polymerase (5 units/.mu.l) [0536] water up to 25
.mu.l [0537] the thermocycling profile to be followed for optimal
results is the following: [0538] 4 min. at 95.degree. C. [0539]
Followed by: 1 min. at 95.degree. C. [0540] 1 min. at 57.degree. C.
[0541] 2 min. at 72.degree. C. [0542] For 5 cycles [0543] Followed
by: 30 sec. at 92.degree. C. [0544] 30 sec. at 57.degree. C. [0545]
1 min. at 72.degree. C. [0546] For 25 cycles [0547] Followed by: 5
minutes at 72.degree. C.
4.6. Agarose Gel Analysis
[0548] To optimally visualize the results of the PCR it was
determined that between 10 and 20 .mu.l of the PCR samples should
be applied on a 1.5% agarose gel (Tris-borate buffer) with an
appropriate molecular weight marker (e.g. 100 bp ladder
Pharmacia).
4.7. Validation of the Results
[0549] It was determined that data from transgenic plant DNA
samples within a single PCR run and a single PCR cocktail should
not be acceptable unless 1) the DNA positive control shows the
expected PCR products (transgenic and endogenous fragments), 2) the
DNA negative control is negative for PCR amplification (no
fragments) and 3) the wild-type DNA control shows the expected
result (endogenous fragment amplification).
[0550] When following the PCR Identification Protocol for EE-GM1 as
described above, lanes showing visible amounts of the transgenic
and endogenous PCR products of the expected sizes, indicate that
the corresponding plant from which the genomic template DNA was
prepared, has inherited the EE-GM1 elite event. Lanes not showing
visible amounts of either of the transgenic PCR products and
showing visible amounts of the endogenous PCR product, indicate
that the corresponding plant from which the genomic template DNA
was prepared, does not comprise the elite event. Lanes not showing
visible amounts of the endogenous and transgenic PCR products,
indicate that the quality and/or quantity of the genomic DNA didn't
allow for a PCR product to be generated. These plants cannot be
scored. The genomic DNA preparation should be repeated and a new
PCR run, with the appropriate controls, has to be performed.
4.8. Use of Discriminating PCR Protocol to Identify EE-GM1
[0551] Before attempting to screen unknowns, a test run, with all
appropriate controls, has to be performed. The developed protocol
might require optimization for components that may differ between
labs (template DNA preparation, Taq DNA polymerase, quality of the
primers, dNTP's, thermocyler, etc.).
[0552] Amplification of the endogenous sequence plays a key role in
the protocol. One has to attain PCR and thermocycling conditions
that amplify equimolar quantities of both the endogenous and
transgenic sequence in a known transgenic genomic DNA template.
Whenever the targeted endogenous fragment is not amplified or
whenever the targeted sequences are not amplified with the same
ethidium bromide staining intensities, as judged by agarose gel
electrophoresis, optimization of the PCR conditions may be
required.
[0553] Glycine max leaf material from a number of plants, some of
which comprising EE-GM1 were tested according to the
above-described protocol. Samples from elite event EE-GM1 and from
Glycine max wild-type were taken as positive and negative controls,
respectively.
[0554] FIG. 5 illustrates the result obtained with the elite event
PCR Identification Protocol for EE-GM1 on a number of soybean plant
samples (lanes 1 to 14). The samples in lane 1 were found to
contain the elite event as the 185 bp band is detected, while the
samples in lanes 2, 3 and 4 do not comprise EE-GM1. Lane 2
comprises another soybean elite event, lane 3 represents a
non-transgenic Glycine max control; lane 4 represents the negative
control (water) sample, and lane 5 to represents the Molecular
Weight Marker (100 bp).
5. Use of a Specific Integration Fragment as a Probe for Detection
of Material Comprising EE-GM1
[0555] A specific integration fragment of EE-GM1 is obtained by PCR
amplification using specific primers SOY06 (SEQ ID No. 16) and
SOY07 (SEQ ID No. 17) or by chemical synthesis and is labeled. This
integration fragment is used as a specific probe for the detection
of EE-GM1 in biological samples. Nucleic acid is extracted from the
samples according to standard procedures. This nucleic acid is then
contacted with the specific probe under hybridization conditions
which are optimized to allow formation of a hybrid. The formation
of the hybrid is then detected to indicate the presence of EE-GM1
nucleic acid in the sample. Optionally, the nucleic acid in the
samples is amplified using the specific primers prior to contact
with the specific probe. Alternatively, the nucleic acid is labeled
prior to contact with the specific probe instead of the integration
fragment. Optionally, the specific probe is attached to a solid
carrier (such as, but not limited to a filter, strip or beads),
prior to contact with the samples.
6. Polymerase Chain Reaction Identification Protocol for EE-GM2
6.1. Primers
[0556] Specific primers were developed which recognize sequences
within the elite event. More particularly, a primer was developed
which recognizes a sequence within the 3' flanking region of
EE-GM2. A second primer was then selected within the sequence of
the foreign DNA so that the primers span a sequence of about 150
nucleotides. The following primers were found to give particularly
clear and reproducible results in a PCR reaction on EE-GM2 DNA:
TABLE-US-00008 SOY9: (SEQ ID No.: 18)
5'-TgT.ggT.TAT.ggC.ggT.gCC.ATC-3' (target: plant DNA) SOY10: (SEQ
ID No.: 19) 5'-TgC.TAC.Agg.CAT.CgT.ggT.gTC-3' (target: insert
DNA)
[0557] Primers targeting an endogenous sequence are preferably
included in the PCR cocktail. These primers serve as an internal
control in unknown samples and in the DNA positive control. A
positive result with the endogenous primer-pair demonstrates that
there is ample DNA of adequate quality in the genomic DNA
preparation for a PCR product to be generated. The endogenous
primers were selected to recognize a housekeeping gene in Glycine
max:
TABLE-US-00009 SOY1: (SEQ ID No.: 9)
5'-gTC.AgC.CAC.ACA.gTg.CCT.AT-3' (located in Glycine max actin 1
gene (Accession J01298)) SOY2: (SEQ ID No.: 10)
5'-gTT.ACC.gTA.CAg.gTC.TTT.CC-3' (located in Glycine max actin 1
gene (Accession J01298))
6.2. Amplified Fragments
[0558] The expected amplified fragments in the PCR reaction
are:
[0559] For primer pair SOY01-SOY02: 413 bp (endogenous control)
[0560] For primer pair SOY09-SOY010: 151 bp (EE-GM2 elite
Event)
6.3. Template DNA
[0561] Template DNA was prepared from a leaf punch according to
Edwards et al. (Nucleic Acid Research, 19, p 1349, 1991). When
using DNA prepared with other methods, a test run utilizing
different amounts of template should be done. Usually 50 ng of
genomic template DNA yields the best results.
6.4. Assigned Positive and Negative Controls
[0562] To avoid false positives or negatives, it was determined
that the following positive and negative controls should be
included in a PCR run: [0563] Master Mix control (DNA negative
control). This is a PCR in which no DNA is added to the reaction.
When the expected result, no PCR products, is observed this
indicates that the PCR cocktail was not contaminated with target
DNA. [0564] A DNA positive control (genomic DNA sample known to
contain the transgenic sequences). Successful amplification of this
positive control demonstrates that the PCR was run under conditions
which allow for the amplification of target sequences. [0565] A
wild-type DNA control. This is a PCR in which the template DNA
provided is genomic
[0566] DNA prepared from a non-transgenic plant. When the expected
result, no amplification of a transgene PCR product but
amplification of the endogenous PCR product, is observed this
indicates that there is no detectable transgene background
amplification in a genomic DNA sample.
6.5. PCR Conditions
[0567] Optimal results were obtained under the following
conditions: [0568] the PCR mix for 25 .mu.l reactions contains:
[0569] 2.5 .mu.l template DNA [0570] 2.5 .mu.l 10.times.
Amplification Buffer (supplied with Taq polymerase) [0571] 0.5
.mu.l 10 mM dNTP's [0572] 0.5 .mu.l SOY09 (10 pmoles/.mu.l) [0573]
0.5 .mu.l SOY010 (10 pmoles/.mu.l) [0574] 0.25 .mu.l SOY01 (10
pmoles/.mu.l) [0575] 0.25 .mu.l SOY02 (10 pmoles/.mu.l) [0576] 0.1
.mu.l Taq DNA polymerase (5 units/.mu.l) [0577] water up to 25
.mu.l [0578] the thermocycling profile to be followed for optimal
results is the following: [0579] 4 min. at 95.degree. C. [0580]
Followed by: 1 min. at 95.degree. C. [0581] 1 min. at 57.degree. C.
[0582] 2 min. at 72.degree. C. [0583] For 5 cycles [0584] Followed
by: 30 sec. at 92.degree. C. [0585] 30 sec. at 57.degree. C. [0586]
1 min. at 72.degree. C. [0587] For 25 cycles [0588] Followed by: 5
minutes at 72.degree. C.
6.6. Agarose Gel Analysis
[0589] To optimally visualize the results of the PCR it was
determined that between 10 and 20 .mu.l of the PCR samples should
be applied on a 1.5% agarose gel (Tris-borate buffer) with an
appropriate molecular weight marker (e.g. 100 bp ladder
Pharmacia).
6.7. Validation of the Results
[0590] It was determined that data from transgenic plant DNA
samples within a single PCR run and a single PCR cocktail should
not be acceptable unless 1) the DNA positive control shows the
expected PCR products (transgenic and endogenous fragments), 2) the
DNA negative control is negative for PCR amplification (no
fragments) and 3) the wild-type DNA control shows the expected
result (endogenous fragment amplification).
[0591] When following the PCR Identification Protocol for EE-GM2 as
described above, lanes showing visible amounts of the transgenic
and endogenous PCR products of the expected sizes, indicate that
the corresponding plant from which the genomic template DNA was
prepared, has inherited the EE-GM2 elite event. Lanes not showing
visible amounts of either of the transgenic PCR products and
showing visible amounts of the endogenous PCR product, indicate
that the corresponding plant from which the genomic template DNA
was prepared, does not comprise the elite event. Lanes not showing
visible amounts of the endogenous and transgenic PCR products,
indicate that the quality and/or quantity of the genomic DNA didn't
allow for a PCR product to be generated. These plants cannot be
scored. The genomic DNA preparation should be repeated and a new
PCR run, with the appropriate controls, has to be performed.
6.8. Use of Discriminating PCR Protocol to Identify EE-GM2
[0592] Before attempting to screen unknowns, a test run, with all
appropriate controls, has to be performed. The developed protocol
might require optimization for components that may differ between
labs (template DNA preparation, Taq DNA polymerase, quality of the
primers, dNTP's, thermocyler, etc.).
[0593] Amplification of the endogenous sequence plays a key role in
the protocol. One has to attain PCR and thermocycling conditions
that amplify equimolar quantities of both the endogenous and
transgenic sequence in a known transgenic genomic DNA template.
Whenever the targeted endogenous fragment is not amplified or
whenever the targeted sequences are not amplified with the same
ethidium bromide staining intensities, as judged by agarose gel
electrophoresis, optimization of the PCR conditions may be
required.
[0594] Glycine max leaf material from a number of plants, some of
which comprising EE-GM2 were tested according to the
above-described protocol. Samples from elite event EE-GM2 and from
Glycine max wild-type were taken as positive and negative controls,
respectively.
[0595] FIG. 6 illustrates the result obtained with the elite event
PCR Identification Protocol for EE-GM2 on a number of soybean plant
samples (lanes 1 to 14). The samples in lane 1 were found to
contain the elite event as the 185 hp band is detected, while the
samples in lanes 2, 3 and 4 do not comprise EE-GM2. Lane 2
comprises another soybean elite event, lane 3 represents a
non-transgenic Glycine max control; lane 4 represents the negative
control (water) sample, and lane 5 represents the Molecular Weight
Marker (100 bp).
7. Use of a Specific Integration Fragment as a Probe for Detection
of Material Comprising EE-GM2
[0596] A specific integration fragment of EE-GM2 is obtained by PCR
amplification using specific primers SOY09 (SEQ ID No. 18) and
SOY010 (SEQ ID No. 19) or by chemical synthesis and is labeled.
This integration fragment is used as a specific probe for the
detection of EE-GM2 in biological samples. Nucleic acid is
extracted from the samples according to standard procedures.
[0597] This nucleic acid is then contacted with the specific probe
under hybridization conditions which are optimized to allow
formation of a hybrid. The formation of the hybrid is then detected
to indicate the presence of EE-GM2 nucleic acid in the sample.
Optionally, the nucleic acid in the samples is amplified using the
specific primers prior to contact with the specific probe.
Alternatively, the nucleic acid is labeled prior to contact with
the specific probe instead of the integration fragment. Optionally,
the specific probe is attached to a solid carrier (such as, but not
limited to a filter, strip or heads), prior to contact with the
samples.
8. Generation of Soybean Plants Comprising EE-GM3 and EE-GM1 or
EE-GM3 and EE-GM2 and Assessment of Agronomic Performance of Such
Plants
[0598] A soybean plant containing a combination of elite events
EE-GM3 and EE-GM1 has been obtained by conventional crossing
between a parent soybean plant comprising EE-GM3 and a parent
soybean plant comprising EE-GM1. Progeny plants comprising both
events are identified using PCR Identification Protocols for EE-GM1
and EE-GM3 as described herein. Specifically, crosses were made
with plants containing EE-GM3 and several EE-GM1 lines. Resulting
F1 plants were grown and sprayed with glyphosate and glufosinate.
F2 seed was harvested from F1 plants and planted (F2 plants were
not sprayed). F2 single plants were pulled. F2:F3 plant rows were
grown and sprayed with glyphosate and glufosinate. Rows homozygous
for both EE-GM3 and EE-GM1 were identified and later harvested.
Segregation data from this trial showed an expected Mendelian
segregation of the events.
[0599] A soybean plant containing a combination of elite events
EE-GM3 and EE-GM2 has been obtained by conventional crossing
between a parent soybean plant comprising EE-GM3 and a parent
soybean plant comprising EE-GM2. Progeny plants comprising both
events are identified using PCR Identification Protocols for EE-GM2
and EE-GM3 as described herein. Specifically, crosses were made
with plants containing EE-GM3 and plants containing EE-GM2. The
resulting F1 plants were crossed to 4 conventional lines. The F1s
from these crosses were grown in the field and sprayed with
glyphosate and glufosinate. F2 seed harvested from F1 plants
resistant to both herbicides was then planted. The F2 plants were
sprayed with both glyphosate and glufosinate. Nine hundred plants
tolerant to both herbicides were harvested and planted in a field
trial. Expected Mendelian segregation data for the events was
obtained in this trial. Approximately 40 lines homozygous for
tolerance to both herbicides were selected for agronomic uniformity
for further studies. These lines had good tolerance to both
herbicides with good agronomic characteristics.
[0600] Field trials with such soybean plants comprising the
combined events in different types of commercial germplasm are
being conducted at multiple locations and various agronomic
parameters of the plants are being evaluated, including plant
height, height to node, stand, vigor, seed yield, and glyphosate,
isoxaflutole and glufosinate tolerance levels.
9. Introgression of EE-GM3 and EE-GM1 or EE-GM2 into Preferred
Cultivars
[0601] Elite event EE-GM3 and elite event EE-GM1 or EE-GM2 are
introduced by repeated back-crossing into commercial soybean
cultivars such as but not limited to Soybean Cultivar 7631014
(US2009252860); Soybean Cultivar 7431014 (US2009252859); Soybean
Cultivar 7925084
(US2009252858); Soybean Cultivar 7311153 (US2009252857); Soybean
Cultivar S070159 (US2009252856); Soybean Cultivar 7535357
(US2009246353); Soybean Cultivar S070160 (US2009246352); Soybean
Cultivar 26074414 (US2009249508); Soybean Cultivar 7509171
(US2009249507); Soybean Cultivar S070158 (US2009246351); Soybean
Cultivar 7511119 (US2009249506); Soybean Cultivar 7113111
(US2009238945); Soybean cultivar S06-02RM018047 (U.S. Pat. No.
7,592,518); Soybean Cultivar 7013345 (US2009232957); Soybean
Cultivar 7041461 (US2009235376); Soybean Cultivar 7549450
(US2009232956); Soybean Cultivar 7317090 (US2009232955); Soybean
Cultivar 2N2V58015 (US2009226597); Soybean Cultivar 7243182
(US2009226596); Soybean Cultivar 7143182 (US2009226595); Soybean
Cultivar 7043182 (US2009220673); Soybean Cultivar S070157
(US2009222950); Soybean Cultivar 306924721 (US2009220672); Soybean
Cultivar 7614385 (US2009220671); Soybean Cultivar 7925118
(US2009214750); Soybean Cultivar 7821295 (US2009214749); Soybean
Cultivar 7811336 (US2009214748); Soybean Cultivar S070150
(US2009214747); Soybean Cultivar 6214260 (US2009214746); Soybean
Cultivar S070152 (US2009214745); Soybean Cultivar 7429331
(US2009214751); Soybean Cultivar 26034631 (US2009208634); Soybean
cultivar S07-03JR108674 (U.S. Pat. No. 7,560,621); Soybean cultivar
S07-031KL016279 (U.S. Pat. No. 7,560,620); Soybean cultivar
S06-CL959411 (U.S. Pat. No. 7,554,017); SOYBEAN CULTIVAR SG3870NRR
(US2009158453); SOYBEAN CULTIVAR HFPR-G (CA2645702); Soybean
cultivar S06-02JR423016 (U.S. Pat. No. 7,521,606); Soybean cultivar
S06-01JR119814 (U.S. Pat. No. 7,518,039); Soybean cultivar
S06-01JR119448 (U.S. Pat. No. 7,518,038); Soybean Cultivar 6540220
(US2009055960); Soybean Cultivar S060292 (US2009055959); Soybean
Cultivar S050228 (US2009055958); Soybean cultivar S06-02JR423003
(U.S. Pat. No. 7,491,873); Soybean cultivar S06-02JR423005 (U.S.
Pat. No. 7,491,872); Soybean cultivar S06-02JR409114 (U.S. Pat. No.
7,485,782); Soybean cultivar S06-SJ144056 (U.S. Pat. No.
7,473,823); Soybean cultivar (U.S. Pat. No. 7,470,835); Soybean
cultivar 6910450 (US2008282369); SOYBEAN CULTIVAR 6223012 (U.S.
Pat. No. 7,446,246); SOYBEAN CULTIVAR 6549250 (U.S. Pat. No.
7,446,245); Soybean Cultivar 17731225 (US2008271204); Soybean
Cultivar 6928285 (US2008271203); Soybean Cultivar 6736054
(US2008271169); Soybean Cultivar S060299 (US2008271199); Soybean
Cultivar S060294 (US2008271202); Soybean Cultivar 6943322
(US2008271201); Soybean cultivar 5343260 (US2008263719); Soybean
cultivar 6439359 (US2008263704); Soybean cultivar 6238359
(US2008263703); Soybean cultivar 6547272 (US2008263702); Soybean
cultivar 6929431 (US2008263701); Soybean cultivar 6703392
(US2008263700); Soybean cultivar 6044483 (US2008263699); Soybean
cultivar S050224 (US2008263698); Soybean cultivar 6719022
(US2008263697); Soybean cultivar 5826056 (US2008263696); Soybean
cultivar 6265047 (US2008263724); Soybean cultivar 6928331
(US2008263695); Soybean cultivar 6719331 (US2008263694); Soybean
cultivar 6636454 (US2008263693); Soybean cultivar 6226454
(US2008263718); Soybean cultivar Q0073801 (US2008256657); SOYBEAN
CULTIVAR 6326393 (US2008256652); SOYBEAN CULTIVAR 6408448
(US2008256651); Soybean cultivar 6449315 (US2008250524); Soybean
cultivar S060296 (US2008250523); Soybean cultivar 6012078
(US2008250522); Soybean cultivar 6342078 (US2008250521); Soybean
cultivar 6419156 (US2008250520); Soybean cultivar 5723264
(US2008250519); Soybean cultivar S050225 (US2008250518); Soybean
cultivar S060298 (US2008244783); Soybean cultivar 6935331
(US2008244782); Soybean cultivar 6819456 (US2008244787); Soybean
cultivar S060297 (US2008244781); Soybean cultivar 6135319
(US2008244786); Soybean cultivar 6819331 (US2008244780); Soybean
cultivar 6137445 (US2008244779); Soybean cultivar 6917445
(US2008244778); Soybean cultivar 6111333 (US2008244777); Soybean
Cultivar S050229 (US2008244776); Soybean Cultivar 6114011
(US2008244775); Soybean Cultivar 6900358 (US2008244784); Soybean
Cultivar 6345184 (US2008244774); Soybean Cultivar 6836085
(US2008244773); Soybean Cultivar 6635047 (US2008244772); Soybean
Cultivar 6139105 (US2008244771); SOYBEAN CULTIVAR 6434385
(US2008244770); SOYBEAN CULTIVAR 5060295 (US2008244769); Soybean
Cultivar 6035184 (US2008244768); Soybean Cultivar S060293
(US2008209590); Soybean Cultivar 6733322 (US2008209594); SOYBEAN
CULTIVAR 6421326 (US2008209593); Soybean Cultivar S060077
(US2008209589); SOYBEAN CULTIVAR 6600375 (US2008209592); Soybean
cultivar S06-CL821457 (U.S. Pat. No. 7,420,104); Soybean cultivar
S07-02KG294306 (U.S. Pat. No. 7,414,178); Soybean cultivar
S06-BA046119 (U.S. Pat. No. 7,414,175); Soybean cultivar
S07-02KG294307 (U.S. Pat. No. 7,411,114); Soybean Cultivar SG3865N
(US2008189802); Soybean cultivar 6701475 (U.S. Pat. No. 7,408,097);
Soybean Cultivar 1335025 (US2008178316); Soybean Cultivar 1686017
(US2008178315); Soybean Cultivar 2388028 (US2008178314); Soybean
Cultivar 2387029 (US2008178313); Soybean cultivar S06-WW152330
(U.S. Pat. No. 7,388,129); Soybean cultivar 6424090 (U.S. Pat. No.
7,385,118); Soybean cultivar 6723322 (U.S. Pat. No. 7,385,115);
Soybean cultivar SG4377NRR (U.S. Pat. No. 7,385,114); Soybean
cultivar S06-02JR111334 (U.S. Pat. No. 7,381,864); Soybean cultivar
6141287 (U.S. Pat. No. 7,378,577); Soybean cultivar MT110501 (U.S.
Pat. No. 7,378,576); Soybean cultivar (U.S. Pat. No. 7,378,575);
Soybean cultivar S06-WW169267 (U.S. Pat. No. 7,375,261); Soybean
cultivar 6223392 (U.S. Pat. No. 7,371,939); Soybean cultivar
S06-CL968413 (U.S. Pat. No. 7,371,937); Soybean cultivar
S06-CL951107 (U.S. Pat. No. 7,368,636); Soybean cultivar
S06-MT9152077 (U.S. Pat. No. 7,361,810); Soybean Cultivar 4211676
(US2008092253); Soybean cultivar S06-M059029 (U.S. Pat. No.
7,355,101); Soybean Cultivar 6548193 (U.S. Pat. No. 7,345,228);
Soybean cultivar 6440261 (U.S. Pat. No. 7,345,227); Soybean
cultivar S060291 (U.S. Pat. No. 7,342,151); Soybean cultivar
S06-MT9206166 (U.S. Pat. No. 7,339,094); Soybean cultivar
S06-WW013107 (U.S. Pat. No. 7,339,093); Soybean cultivar S06-M03256
(U.S. Pat. No. 7,335,820); Soybean cultivar 6134466 (U.S. Pat. No.
7,332,656); Soybean cultivar S06-01JR123373 (U.S. Pat. No.
7,329,800); Soybean cultivar S06-MT9211059 (U.S. Pat. No.
7,326,831); Soybean cultivar 26170838 (US2008016590); Soybean
cultivar 306612412 (US2008016588); Soybean cultivar 26660135
(US2008016587); Soybean cultivar 306734323 (US2008016586); Soybean
cultivar S06-01JR122235 (U.S. Pat. No. 7,317,144); SOYBEAN CULTIVAR
5900450 (U.S. Pat. No. 7,314,986); Soybean cultivar S06-MT116260
(U.S. Pat. No. 7,314,984); Soybean cultivar S06-SJ143606 (U.S. Pat.
No. 7,312,381); Soybean cultivar S06-98181-G01-35167 (U.S. Pat. No.
7,309,819); SOYBEAN CULTIVAR 26082635 (U.S. Pat. No. 7,304,219);
Soybean cultivar BA922834 (U.S. Pat. No. 7,304,217); Soybean
cultivar 01JR123480 (U.S. Pat. No. 7,304,216); Soybean cultivar
M061422 (U.S. Pat. No. 7,304,215); Soybean cultivar 17082821
(US2007277262); Soybean cultivar 17621620 (US2007277261); Soybean
cultivar 00977706 (US2007277260); Soybean cultivar S060182
(US2007277259); Soybean cultivar 26312034 (U.S. Pat. No.
7,301,078); Soybean cultivar 26143837 (U.S. Pat. No. 7,301,077);
Soybean cultivar 435.TCS (US2007271626); Soybean cultivar 495.RC
(US2007271625); Soybean cultivar 5306230 (U.S. Pat. No. 7,297,845);
Soybean cultivar S06-WW167686 (U.S. Pat. No. 7,291,772); Soybean
cultivar 6141145 (US2007245426); Soybean cultivar S050232
(US2007226829); Soybean cultivar 5333301 (US2007226828); SOYBEAN
CULTIVAR S050215 (US2007226827); SOYBEAN CULTIVAR 3235020
(US2007226826); Soybean cultivar 5720482 (US2007226825); Soybean
cultivar S050216 (US2007226824); Soybean Cultivar 5512112
(US2007226823); Soybean cultivar 3233021 (US2007226822); SOYBEAN
CULTIVAR 1336024 (US2007226821); Soybean cultivar 5348287
(US2007226820); Soybean cultivar 5204220 (US2007226819); Soybean
cultivar 6188027 (US2007226818); Soybean cultivar 4183026
(US2007226817); Soybean cultivar S06-WW157958 (U.S. Pat. No.
7,271,325); Soybean cultivar 5733056 (US2007209091); Soybean
cultivar 90501911 (US2007209090); Soybean cultivar S050221
(US2007204361); SOYBEAN CULTIVAR 5802205 (US2007204360); Soybean
cultivar 1000642 (US2007204359); Soybean cultivar 5420128
(US2007204358); Soybean cultivar S050222 (US2007199094); Soybean
cultivar S050217 (US2007199093); SOYBEAN CULTIVAR S050223
(US2007199092); Soybean cultivar S050218 (US2007199091); Soybean
cultivar 5419227 (US2007199089); Soybean cultivar 5319227
(US2007199088); Soybean cultivar 5723045 (US2007199087); SOYBEAN
CULTIVAR 5051007 (US2007199086); Soybean cultivar 5826175
(US2007192893); Soybean cultivar S050231 (US2007192892); SOYBEAN
CULTIVAR 5826376 (US2007192891); SOYBEAN CULTIVAR 5628386
(US2007192890); Soybean cultivar 5138236 (US2007186307); Soybean
cultivar 5608398 (US2007186306); SOYBEAN CULTIVAR S050230
(US2007186305); SOYBEAN CULTIVAR 5624126 (US2007180561); SOYBEAN
CULTIVAR 5019225 (US2007180560); SOYBEAN CULTIVAR 5549483
(US2007180559); SOYBEAN CULTIVAR 4189010 (US2007180551); SOYBEAN
CULTIVAR 1486018 (US2007180550); SOYBEAN CULTIVAR S050235
(US2007180549); SOYBEAN CULTIVAR 5023230 (US2007180548); SOYBEAN
CULTIVAR S050238 (US2007174930); SOYBEAN CULTIVAR 5830261
(US2007174928); SOYBEAN CULTIVAR S050226 (U.S. Pat. No. 7,247,772);
SOYBEAN CULTIVAR 5806063 (U.S. Pat. No. 7,247,771); SOYBEAN
CULTIVAR S050233 (U.S. Pat. No. 7,244,881); SOYBEAN CULTIVAR
5726085 (U.S. Pat. No. 7,241,939); Soybean cultivar MT000792 (U.S.
Pat. No. 7,238,867); Soybean cultivar 5521161 (U.S. Pat. No.
7,235,718); Soybean cultivar WW109447 (U.S. Pat. No. 7,235,717);
Soybean cultivar BA947474 (U.S. Pat. No. 7,220,898); Soybean
cultivar 5939002 (U.S. Pat. No. 7,217,870); Soybean cultivar
5726175 (U.S. Pat. No. 7,217,869); Soybean cultivar 5432082 (U.S.
Pat. No. 7,217,868); Soybean cultivar SG0850RR (U.S. Pat. No.
7,211,715); Soybean cultivar SG1750NRR (U.S. Pat. No. 7,208,658);
Soybean cultivar MT017827 (U.S. Pat. No. 7,208,657); Soybean
cultivar 4N2V74028 (U.S. Pat. No. 7,205,458); Soybean cultivar
CL431203 (U.S. Pat. No. 7,202,400); Soybean cultivar 4NOS63222
(U.S. Pat. No. 7,199,288); Soybean cultivar 5520279 (U.S. Pat. No.
7,196,253); Soybean cultivar 5834401 (U.S. Pat. No. 7,196,252);
Soybean cultivar 5621161 (U.S. Pat. No. 7,196,251); Soybean
cultivar CL722114 (U.S. Pat. No. 7,196,250); Soybean cultivar
5741081 (U.S. Pat. No. 7,193,140); Soybean cultivar CL727422 (U.S.
Pat. No. 7,186,895); Soybean cultivar 4N2V5502 (U.S. Pat. No.
7,183,468); Soybean cultivar S083011 (U.S. Pat. No. 7,173,169);
Soybean cultivar 5626085 (U.S. Pat. No. 7,169,976); SOYBEAN
CULTIVAR S050051 (U.S. Pat. No. 7,169,974); SOYBEAN CULTIVAR
4506816 (US2006294626); Soybean cultivar WW152201 (U.S. Pat. No.
7,132,594); Soybean cultivar CL727636 (U.S. Pat. No. 7,132,593);
Soybean cultivar M08851 (U.S. Pat. No. 7,126,047); Soybean cultivar
4324401 (U.S. Pat. No. 7,105,728); Soybean cultivar S050164 (U.S.
Pat. No. 7,105,727); Soybean cultivar 4136015 (US2006195931);
Soybean cultivar 3133014 (US2006195930); Soybean cultivar S040132
(US2006195929); Soybean Cultivar 4328386 (US2006195928); Soybean
cultivar 1339013 (US2006195927); SOYBEAN CULTIVAR 4423183
(US2006195925); Soybean cultivar S040131 (US2006195924); Soybean
cultivar 4929388 (US2006195923); Soybean cultivar 4817034
(US2006195922); Soybean cultivar 4916816 (U.S. Pat. No. 7,098,385);
Soybean cultivar 4713487 (US2006191032); Soybean cultivar 4348019
(US2006191031); Soybean cultivar S040122 (US2006191030); Soybean
cultivar S040133 (US2006185031); Soybean cultivar CL821418 (U.S.
Pat. No. 7,091,404); SOYBEAN CULTIVAR 4441080 (U.S. Pat. No.
7,091,403); Soybean cultivar 4805442 (US2006179509); Soybean
cultivar 4921237 (US2006179508); Soybean cultivar 4417380
(US2006174369); Soybean cultivar 4405070 (US2006174368); Soybean
cultivar 4417779 (U.S. Pat. No. 7,084,328); Soybean cultivar
S040125 (US2006168678); Soybean cultivar 4909380 (U.S. Pat. No.
7,081,572); Soybean cultivar S050162 (U.S. Pat. No. 7,081,571);
Soybean cultivar 6084016 (U.S. Pat. No. 7,081,570); Soybean
cultivar S050163 (U.S. Pat. No. 7,078,600); Soybean cultivar
S040135 (U.S. Pat. No. 7,078,598); Soybean cultivar S040117 (U.S.
Pat. No. 7,078,597); Soybean cultivar M03393 (U.S. Pat. No.
7,071,391); Soybean cultivar 4145306 (U.S. Pat. No. 7,064,253);
Soybean cultivar 900213 (US2006117405); Soybean cultivar 1000126
(US2006117404); Soybean cultivar 901023 (US2006117403); Soybean
cultivar S040130 (U.S. Pat. No. 7,053,280); Soybean cultivar
4706198 (U.S. Pat. No. 7,053,279); Soybean cultivar S040118 (U.S.
Pat. No. 7,053,278); Soybean cultivar S040119 (U.S. Pat. No.
7,053,277); Soybean cultivar S040123 (U.S. Pat. No. 7,053,276);
Soybean cultivar 4442112 (U.S. Pat. No. 7,049,497); SOYBEAN
CULTIVAR 917013 (U.S. Pat. No. 7,045,689); Soybean cultivar S040124
(U.S. Pat. No. 7,045,691); Soybean cultivar 4238491 (U.S. Pat. No.
7,045,690); Soybean cultivar S010136 (U.S. Pat. No. 7,041,882);
Soybean cultivar 900613 (U.S. Pat. No. 7,030,297); Soybean cultivar
4337175 (U.S. Pat. No. 7,030,301); Soybean cultivar S040121 (U.S.
Pat. No. 7,030,300); Soybean cultivar 4216033 (U.S. Pat. No.
7,030,299); Soybean cultivar S040128 (U.S. Pat. No. 7,022,901);
Soybean cultivar S040120 (U.S. Pat. No. 7,022,900); Soybean
cultivar S040127 (U.S. Pat. No. 7,019,199); Soybean cultivar
S040134 (U.S. Pat. No. 7,015,378); Soybean cultivar S040129 (U.S.
Pat. No. 7,015,377); Soybean cultivar 4513420 (U.S. Pat. No.
7,005,564); Soybean cultivar 943013 (US2006031958); Soybean
cultivar S030136 (US2006021081); Soybean cultivar 927013
(US2006021080); Soybean cultivar 1000109 (US2006015962); Soybean
cultivar 90046112 (US2006010530); Soybean cultivar 90897327
(US2006010529); Soybean cultivar 90362421 (US2006010528); Soybean
cultivar 03022253 (US2006010527); Soybean cultivar 02022433
(US2006010526); Soybean cultivar 02022323 (US2006010525); Soybean
cultivar 02912951 (US2006010524); Soybean cultivar 0102115
(US2006010523); Soybean cultivar 915034 (US2006010522); Soybean
cultivar 0509255 (US2006010521); Soybean cultivar 4803070 (U.S.
Pat. No. 6,982,368); Soybean cultivar 4704310 (U.S. Pat. No.
6,979,762); Soybean cultivar SJ919784 (US2005268362); Soybean
cultivar CL615261 (US2005268361); Novel soybean (US2004199964);
Soybean cultivar 0509214 (US2005210542); Soybean cultivar 70826751
(US2005193442); Soybean cultivar 0509243 (US2005193441); Soybean
cultivar 0509246 (US2005193440); Soybean cultivar 0509253
(US2005193439); Soybean cultivar 0509247 (US2005193438); Soybean
cultivar 0509252 (US2005193437); Soybean cultivar 0509241
(US2005193436); Soybean cultivar 0509249 (U.S. Pat. No. 6,884,927);
Soybean cultivar 0509244 (US2005183158); Soybean cultivar 0509240
(US2005183157); Soybean cultivar 0509239 (US2005183156); Soybean
cultivar 0509254 (US2005183155); Soybean cultivar 0509245
(US2005183154); Soybean cultivar 0509251 (US2005183153); Soybean
cultivar 4283008 (U.S. Pat. No. 6,888,050); Soybean cultivar
2386009 (US2005183152); Soybean cultivar 3282002 (U.S. Pat. No.
6,870,080); Soybean cultivar 0509248 (US2005183151); Soybean
cultivar S091007 (U.S. Pat. No. 6,906,249); Soybean cultivar
0509236 (US2005166281); Soybean cultivar 0509235 (US2005166280);
Soybean cultivar 0509237 (US2005166279); Soybean cultivar SG5322NRR
(US2005164390); Soybean cultivar SG5030NRR (US2005166278); Soybean
cultivar SG4911NRR (US2005166277); Soybean cultivar S030153
(US2005160504); Soybean cultivar S030158 (US2005144680); SOYBEAN
CULTIVAR 5030160 (US2005144679); Soybean cultivar S030161
(US2005144678); Soybean cultivar S030157 (US2005144677); Soybean
cultivar S030155 (US2005144676); Soybean cultivar S030156
(US2005144675); SOYBEAN CULTIVAR S030159 (US2005144674); Soybean
cultivar S030154 (U.S. Pat. No. 6,900,376); Soybean cultivar
S020030 (US2005114929); Soybean cultivar S030010 (US2005114928);
Soybean cultivar SG1431RR (US2005097629); SOYBEAN CULTIVAR
SG1330NRR (US2005097642); Soybean cultivar S030150 (US2005071900);
SOYBEAN CULTIVAR 5022209 (US2005050601); Soybean cultivar S022217
(US2005050600); Soybean cultivar S022219 (US2005050599); Soybean
cultivar S030151 (US2005050598); Soybean cultivar 0491735
(US2005022272); Soybean cultivar S022218 (US2005022271); Soybean
cultivar 6190006 (US2004268447); Soybean cultivar SO1120RR
(US2004250316); Soybean cultivar 0487681 (US2004237153); Soybean
cultivar 0491717 (US2004237152); Soybean cultivar S022220
(US2004237151); Soybean cultivar 0491715 (US2004237150); Soybean
cultivar 0491712 (US2004237149); Soybean cultivar 0491718
(US2004237148); Soybean cultivar 99271316 (US2004221344); Soybean
cultivar S022212 (US2004221343); Soybean cultivar 0491737
(US2004221342); Soybean cultivar S022211 (US2004221341); Soybean
cultivar S022210 (US2004221340); Soybean cultivar S022213
(US2004221339); Soybean cultivar 0491725 (US2004221346); Soybean
cultivar 03129016 (US2004221329); Soybean cultivar S022208
(US2004221328); Soybean cultivar S022207 (US2004221345); Soybean
cultivar 02932 (US2004210968); Soybean cultivar 94137321
(US2004205862); Soybean cultivar 94106224 (US2004205861); Soybean
cultivar 94143901 (US2004205859); SOYBEAN CULTIVAR 0487685
(US2004205858); SOYBEAN CULTIVAR 92440927 (US2004205857); Soybean
cultivar 0487686 (US2004205856); Soybean cultivar S022215
(US2004205855); Soybean cultivar S022214 (US2004205854); SOYBEAN
CULTIVAR 0491726 (US2004205849); SOYBEAN CULTIVAR 92478609
(US2004205853); Soybean cultivar 922013 (U.S. Pat. No. 6,781,040);
SOYBEAN CULTIVAR 0491727 (US2004205852); SOYBEAN CULTIVAR 0491728
(US2004205851); Soybean cultivar
1465003 (US2004098766); Soybean cultivar 3186004 (US2004019936);
Soybean cultivar 7085005 (US2004205850); Soybean cultivar S022204
(US2004199958); Soybean cultivar S022206 (US2004199957); Soybean
cultivar 0491731 (US2004199956); Soybean cultivar 0491733
(US2004199955); Soybean cultivar 0491738 (US2004199954); Soybean
cultivar 0491732 (US2004199953); Soybean cultivar 0491729
(US2004199952); Soybean cultivar S020011 (US2004199951); Soybean
cultivar 0491739 (US2004199950); Soybean cultivar 0491730
(US2004199949); Soybean cultivar 13873 (US2004199948); Soybean
cultivar 954011 (US2004181822); Soybean cultivar 010022
(US2004181831); Soybean cultivar 4181001 (US2003229926); Soybean
cultivar 0491721 (US2004168228); Soybean cultivar 0491723 (U.S.
Pat. No. 6,911,581); Soybean cultivar 0491716 (US2004168226);
Soybean cultivar 0491713 (US2004168225); Soybean cultivar 0491711
(US2004168224); Soybean cultivar 0491722 (US2004168223); Soybean
cultivar 0491724 (US2004168222); Soybean cultivar 0491720
(US2004168221); Soybean cultivar 0487682 (US2004168220); Soybean
cultivar 0491714 (US2004168219); Soybean cultivar 0491719
(US2004168218); Soybean cultivar DP 5634 RR (US2003177540); Soybean
Cultivar S56-D7 (US2004098765); Soybean cultivar 926877
(US2004064859); Soybean cultivar SE73753 (US2004055059); Soybean
cultivar SN83594 (US2004055058); Soybean cultivar SE71112
(US2004055056); Soybean cultivar SE73090 (US2004055054); Soybean
cultivar SN79526 (US2004055053); Soybean cultivar SW90702
(US2004055052); Soybean cultivar SN79525 (US2004055051); Soybean
cultivar SE90345 (US2004055050); Soybean cultivar 0149928
(US2004055049); Soybean cultivar SN83780 (US2004055048); Soybean
cultivar 0053840 (US2004055047); Soybean cultivar 924001
(US2004055046); Soybean cultivar 0004747 (US2004055057); Soybean
cultivar 0037357 (US2004055045); Soybean cultivar SN83366
(US2004055044); Soybean cultivar SN76208 (US2004055043); Soybean
cultivar 0037370 (US2004055042); Soybean cultivar SX95512
(US2004049821); Soybean cultivar 0096008 (US2004049820); Soybean
cultivar SN83544 (US2004049819); Soybean cultivar 0088401
(US2004049818); Soybean cultivar SN64195 (US2004049817); Soybean
cultivar 0034754 (US2004049816); Soybean cultivar SN71173
(US2004049815); Soybean cultivar SN83211 (US2004049814); Soybean
cultivar 92422749 (US2004045058); Soybean cultivar 0120311
(US2004045057); Soybean cultivar S010344 (US2004003438); Soybean
cultivar 70876922 (US2004003437); Soybean cultivar 924496
(US2004003436); Soybean cultivar 19705120 (US2003237116); Soybean
cultivar 19704220 (US2003235914); Soybean Cultivar 19704280
(US2003237115); Soybean cultivar 19704210 (US2003237114); Soybean
cultivar S37-N4 (US2003237113); Soybean cultivar 19602310
(US2003233685); Soybean cultivar 19704120 (US2003233684); Soybean
cultivar 19704230 (US2003233683); Soybean cultivar 1000126
(US2003233682); Soybean cultivar 93831526 (US2003221226); Soybean
cultivar 0322581 (US2003221225); Soybean cultivar 0332149
(US2003213028); Soybean cultivar 0332144 (US2003213027); Soybean
cultivar 924788 (US2003213026); Soybean cultivar 924861
(US2003213025); Soybean cultivar 928070 (US2003213024); Soybean
cultivar S010354 (US2003213023); Soybean cultivar S010360
(US2003213022); Soybean cultivar S010361 (US2003213021); Soybean
cultivar S010363 (US2003213020); Soybean cultivar S010364
(US2003213019); Soybean cultivar 0332148 (US2003208805); Soybean
cultivar 0332147 (US2003208804); Soybean cultivar 0332146
(US2003208803); Soybean cultivar 0332135 (US2003208802); Soybean
cultivar 1000144 (US2003208801); Soybean cultivar 0332143
(US2003208800); Soybean cultivar 0332145 (US2003208799); Soybean
cultivar S010345 (US2003204884); Soybean cultivar 0332131
(US2003204883); Soybean cultivar 0332130 (US2003204882); Soybean
cultivar 0332129 (US2003204881); Soybean cultivar 0332122
(US2003204880); Soybean cultivar S010350 (US2003204879); Soybean
cultivar S010355 (US2003204878); Soybean cultivar 031766
(US2003204877); Soybean cultivar S010353 (US2003204876); Soybean
cultivar 0322580 (US2003200579); Soybean cultivar 0322579
(US2003200578); Soybean cultivar S010347 (US2003200577); Soybean
cultivar S010349 (US2003200576); Soybean cultivar 0332141
(US2003200575); Soybean cultivar 0332142 (US2003200574); Soybean
Cultivar 0332133 (US2003200573); Soybean cultivar 0332134
(US2003200572); Soybean cultivar 0332139 (US2003200571); Soybean
cultivar 0332137 (US2003200570); Soybean variety XB33U08 (U.S. Pat.
No. 7,598,435); Soybean variety XB27D08 (U.S. Pat. No. 7,592,519);
Soybean variety XB41M08 (U.S. Pat. No. 7,589,261); Soybean variety
XBO5J08 (U.S. Pat. No. 7,589,260); Soybean variety XB33T08 (U.S.
Pat. No. 7,589,259); Soybean variety XB30Y08 (U.S. Pat. No.
7,586,025); Soybean variety XB40U08 (U.S. Pat. No. 7,582,813);
Soybean variety XB29M08 (U.S. Pat. No. 7,582,811); SOYBEAN VARIETY
93Y10 (US2009144843); SOYBEAN VARIETY D4325666 (US2009055957);
SOYBEAN VARIETY D4125897 (US2009055956); SOYBEAN VARIETY D4698573
(US2009055955); SOYBEAN VARIETY D4356652 (US2009019592); SOYBEAN
VARIETY D4456885 (US2009019591); SOYBEAN VARIETY D4698013
(US2009019590); SOYBEAN VARIETY D4637114 (US2009019589); SOYBEAN
VARIETY D4102367 (US2009019595); SOYBEAN VARIETY D4266582
(US2009019594); SOYBEAN VARIETY D4422801 (US2009019593); SOYBEAN
VARIETY D4520980 (US2009019588); SOYBEAN VARIETY D4521369
(US2009019587); SOYBEAN VARIETY D4223057 (US2009019586); SOYBEAN
VARIETY D4682156 (US2009019585); SOYBEAN VARIETY D4233569
(US2009019584); SOYBEAN VARIETY D4925614 (US2009019583); SOYBEAN
VARIETY D4203144 (US2009019604); SOYBEAN VARIETY D4102536
(US2009019582); SOYBEAN VARIETY D4865324 (US2009019581); SOYBEAN
VARIETY D4825495 (US2009019580); SOYBEAN VARIETY D4659251
(US2009019579); SOYBEAN VARIETY D4258962 (US2009019578); SOYBEAN
VARIETY D4253969 (US2009019577); SOYBEAN VARIETY D4696658
(US2009019603); SOYBEAN VARIETY D4256925 (US2009019576); SOYBEAN
VARIETY D4253681 (US2009019575); SOYBEAN VARIETY D4789254
(US2009019574); SOYBEAN VARIETY D4713125 (US2009019573); SOYBEAN
VARIETY D4526223 (US2009019572); SOYBEAN VARIETY D4556201
(US2009019571); SOYBEAN VARIETY D4012368 (US2009019570); SOYBEAN
VARIETY D4452019 (US2009019569); SOYBEAN VARIETY D4201483
(US2009019568); SOYBEAN VARIETY D4463892 (US2009019567); SOYBEAN
VARIETY D4159630 (US2009019566); SOYBEAN VARIETY D4470236
(US2009019565); SOYBEAN VARIETY D4063284 (US2009019564); SOYBEAN
VARIETY D4021792 (US2009013429); SOYBEAN VARIETY D4902530
(US2009013428); SOYBEAN VARIETY D4367012 (US2009013427); SOYBEAN
VARIETY D4923560 (US2009013426); SOYBEAN VARIETY D4253854
(US2009013425); SOYBEAN VARIETY D4210110 (US2009007290); SOYBEAN
VARIETY D4523081 (US2009007289); SOYBEAN VARIETY D4328762
(US2009007288); SOYBEAN VARIETY D4483789 (US2009007287); SOYBEAN
VARIETY D4311702 (US2009007286); SOYBEAN VARIETY D4127789
(US2008313765); SOYBEAN VARIETY D4361423 (US2008313764); SOYBEAN
VARIETY D4208814 (US2008313763); SOYBEAN VARIETY D4201139
(US2008313762); SOYBEAN VARIETY D4120384 (US2008313761); SOYBEAN
VARIETY D4572906 (US2008313760); SOYBEAN VARIETY D4301279
(US2008313759); SOYBEAN VARIETY D4422957 (US2008313758); SOYBEAN
VARIETY D4256958 (US2008313757); SOYBEAN VARIETY 4074328
(US2008282366); SOYBEAN VARIETY XB47Q06 (US2008244767); SOYBEAN
VARIETY XB26R06 (US2008244766); SOYBEAN VARIETY 4991629
(US2008216190); SOYBEAN VARIETY 4158090 (US2008216189); Soybean
Variety XB40K07 (US2008209582); SOYBEAN VARIETY D0069201
(US2008178345); SOYBEAN VARIETY D0064801 (US2008178320); SOYBEAN
VARIETY D0063801 (US2008178344); SOYBEAN VARIETY D0061501
(US2008178343); SOYBEAN VARIETY 4938051 (US2008178319); SOYBEAN
VARIETY 4880500 (US2008178318); SOYBEAN VARIETY 4835953
(US2008178317); SOYBEAN VARIETY 4684181 (US2008178342); SOYBEAN
VARIETY 4427363 (US2008178340); SOYBEAN VARIETY 4676311
(US2008178339); SOYBEAN VARIETY 4953710 (US2008178337); SOYBEAN
VARIETY 4857548 (US2008178336); SOYBEAN VARIETY 4551757
(US2008178335); SOYBEAN VARIETY 4027271 (US2008178334); SOYBEAN
VARIETY 4274171 (US2008178333); SOYBEAN VARIETY 0341931
(US2008178332); SOYBEAN VARIETY 4282159 (US2008178331); SOYBEAN
VARIETY 4852004 (US2008178330); SOYBEAN VARIETY 4688589
(US2008178329); SOYBEAN VARIETY 4614131 (US2008178327); SOYBEAN
VARIETY 4201823 (US2008178326); SOYBEAN VARIETY 92M22
(US2008178350); SOYBEAN VARIETY 4174206 (US2008178322); SOYBEAN
VARIETY 4305498 (US2008178321); SOYBEAN VARIETY 4423586
(US2008172761); SOYBEAN VARIETY 4568207 (US2008172756); SOYBEAN
VARIETY 4840308 (US2008172755); SOYBEAN VARIETY 4256323
(US2008172754); SOYBEAN VARIETY 4789516 (U.S. Pat. No. 7,399,907);
SOYBEAN VARIETY 90Y40 (US2008168581); SOYBEAN VARIETY 4959932 (U.S.
Pat. No. 7,396,983); SOYBEAN VARIETY 4062885 (U.S. Pat. No.
7,394,000); Soybean variety 4858197 (U.S. Pat. No. 7,390,940);
Soybean variety 4092390 (U.S. Pat. No. 7,390,939); Soybean variety
4735486 (U.S. Pat. No. 7,390,938); Soybean variety 4219527 (U.S.
Pat. No. 7,388,132); Soybean variety 4599695 (U.S. Pat. No.
7,388,131); Soybean variety 4554257 (U.S. Pat. No. 7,388,130);
Soybean variety 4896902 (U.S. Pat. No. 7,385,113); Soybean variety
4367308 (U.S. Pat. No. 7,385,112); Soybean variety 4589609 (U.S.
Pat. No. 7,385,111); Soybean variety 4640250 (U.S. Pat. No.
7,385,110); Soybean variety 4540394 (U.S. Pat. No. 7,385,109);
Soybean variety 4297661 (U.S. Pat. No. 7,385,108); Soybean variety
4958786 (U.S. Pat. No. 7,381,866); Soybean variety 4440685 (U.S.
Pat. No. 7,375,262); Soybean variety 4008211 (U.S. Pat. No.
7,371,938); Soybean variety 4778469 (U.S. Pat. No. 7,368,637);
Soybean variety 4766295 (U.S. Pat. No. 7,355,103); Soybean variety
4436909 (U.S. Pat. No. 7,355,102); Soybean variety 4812469 (U.S.
Pat. No. 7,351,886); Soybean variety 4761767 (U.S. Pat. No.
7,351,885); Soybean variety 4142393 (U.S. Pat. No. 7,329,801);
Soybean variety 4502135 (U.S. Pat. No. 7,326,832); Soybean variety
4353363 (U.S. Pat. No. 7,321,082); Soybean variety 91B42 (U.S. Pat.
No. 7,317,143); SOYBEAN VARIETY 0330739 (US2007271622); Soybean
variety 0384279 (U.S. Pat. No. 7,294,768); SOYBEAN VARIETY 4175567
(US2007256187); SOYBEAN VARIETY 4336643 (US2007256186); SOYBEAN
VARIETY 4671685 (US2007256185); SOYBEAN VARIETY 4309194
(US2007256190); SOYBEAN VARIETY 0330738 (US2007256184); SOYBEAN
VARIETY 0045477 (US2007256183); SOYBEAN VARIETY 0437973
(US2007256182); SOYBEAN VARIETY 0457028 (US2007256181); SOYBEAN
VARIETY 0367478 (US2007256180); SOYBEAN VARIETY 0358232
(US2007256179); SOYBEAN VARIETY 0417158 (US2007256178); SOYBEAN
VARIETY 4559809 (US2007256177); SOYBEAN VARIETY 0196172
(US2007256176); SOYBEAN VARIETY 4785923 (US2007256175); SOYBEAN
VARIETY 4587513 (US2007256174); SOYBEAN VARIETY 0409670
(US2007256173); SOYBEAN VARIETY 4010165 (US2007256172); SOYBEAN
VARIETY 0421133 (US2007256171); SOYBEAN VARIETY 0240187
(US2007256170); SOYBEAN VARIETY 0387907 (US2007256169); SOYBEAN
VARIETY 0232405 (US2007256168); SOYBEAN VARIETY 0146529
(US2007256167); SOYBEAN VARIETY 4788561 (US2007256166); SOYBEAN
VARIETY 457114 (US2007256165); SOYBEAN VARIETY 0149217
(US2007256164); SOYBEAN VARIETY 4247825 (US2007254366); SOYBEAN
VARIETY 0212938 (US2007256163); SOYBEAN VARIETY 0146565
(US2007256162); SOYBEAN VARIETY 4647672 (US2007256161); SOYBEAN
VARIETY 0215818 (US2007256160); SOYBEAN VARIETY 0384531
(US2007256159); SOYBEAN VARIETY 4878185 (US2007254365); SOYBEAN
VARIETY 4498438 (US2007256158); SOYBEAN VARIETY 0436052
(US2007256157); SOYBEAN VARIETY 4782157 (US2007256156); SOYBEAN
VARIETY 0385457 (US2007256155); SOYBEAN VARIETY 0385240
(US2007256154); SOYBEAN VARIETY 4735316 (US2007256153); SOYBEAN
VARIETY 0277524 (US2007256152); SOYBEAN VARIETY 0276951
(US2007256151); Soybean Variety XB37L07 (US2007245429); Soybean
Variety XB35X07 (US2007226837); Soybean Variety XB35S07
(US2007226836); Soybean Variety XB35F07 (US2007226835); Soybean
Variety XB34R07 (US2007226834); Soybean Variety XB34L07
(US2007226833); Soybean Variety XB34D07 (US2007226832); Soybean
Variety XB33G07 (US2007226831); Soybean Variety 98Y11
(US2007169220); Soybean variety 0137335 (U.S. Pat. No. 7,241,941);
Soybean Variety XB15E07 (US2007150980); Soybean Variety 92M52
(US2007150979); Soybean Variety XB47R07 (US2007136888); Soybean
Variety XB46V07 (US2007136887); Soybean Variety XB57E07
(US2007136886); Soybean Variety XB54X07 (US2007136885); Soybean
Variety XB54V07 (US2007136884); Soybean Variety XB52Q07
(US2007136883); Soybean Variety XB37M07 (US2007136882); Soybean
Variety XB37J07 (US2007136881); Soybean Variety XB34Q07
(US2007136880); Soybean Variety XB32S07 (US2007136879); Soybean
Variety XB32J07 (US2007136878); Soybean Variety XB31R07
(US2007136877); Soybean Variety XB31J07 (US2007136876); Soybean
Variety XB29K07 (US2007136875); Soybean Variety XB31H07
(US2007136874); Soybean Variety XB30G07 (US2007136873); Soybean
Variety XB30E07 (US2007136872); Soybean Variety XB25E07
(US2007136871); Soybean Variety XB26X07 (US2007136870); Soybean
Variety XB23L07 (US2007136869); Soybean Variety XB19Z07
(US2007136868); Soybean Variety XB19E07 (US2007136867); Soybean
Variety XB18M07 (US2007136866); Soybean Variety XB18K07
(US2007136865); Soybean Variety XB18J07 (US2007136864); Soybean
Variety XB17WO7 (US2007136863); Soybean Variety XB17U07
(US2007136862); Soybean Variety XB15B07 (US2007136861); Soybean
Variety XB12R07 (US2007136860); Soybean Variety XB11J07
(US2007136859); Soybean Variety XBO4E07 (US2007136858); Soybean
Variety XBO2K07 (US2007136857); Soybean Variety XB49V07
(US2007136856); Soybean Variety XB48X07 (US2007136855); Soybean
Variety 92M75 (US2007136854); Soybean Variety XB48WO7
(US2007136853); Soybean Variety XB44G07 (US2007136852); Soybean
Variety XB42K07 (US2007136851); Soybean Variety XB42H07
(US2007136850); Soybean Variety XB41J07 (US2007136849); Soybean
Variety XB40Y07 (US2007136848); Soybean Variety XB40X07
(US2007136847); Soybean Variety XB39E07 (US2007136846); Soybean
Variety XB38WO7 (US2007136845); Soybean Variety XB38S07
(US2007136844); Soybean Variety XB23V07 (US2007136843); Soybean
Variety XB31M07 (US2007130652); Soybean Variety XB28E07
(US2007130651); Soybean Variety XB25S07 (US2007130650); Soybean
Variety XB21N07 (US2007130649); Soybean Variety XBO3Q07
(US2007130648); Soybean Variety XB49Q07 (US2007130647); Soybean
Variety XBO6M07 (US2007130646); Soybean variety S04-97130-15-02
(U.S. Pat. No. 7,196,249); Soybean variety S04-97026-N99-42648-01
(U.S. Pat. No. 7,189,896); Soybean variety S05-97016-G99-21212
(U.S. Pat. No. 7,186,894); Soybean variety S05-99048-19 (U.S. Pat.
No. 7,164,064); Soybean variety 92B14 (U.S. Pat. No. 7,161,065);
Soybean Variety 98R31 (US2007006350); Soybean variety
S05-97177-N00-22972 (U.S. Pat. No. 7,132,592); Soybean variety
XB25G06 (US2006225160); Soybean variety 91M70 (US2006174381);
Soybean variety XB24R06 (US2006162029); Soybean variety
S03-95368-N98-52902 (U.S. Pat. No. 7,078,594); Soybean variety
S05-97130-51 (U.S. Pat. No. 7,078,599); Soybean variety XB11L06
(US2006130187); Soybean variety 94B13 (U.S. Pat. No. 7,064,251);
Soybean variety 94B74 (U.S. Pat. No. 7,064,250); Soybean variety
XB27J06 (US2006112462); Soybean variety XB29N06 (US2006112460);
Soybean variety XB28T06 (US2006112459); Soybean variety XB16WO6
(US2006112458); Soybean variety XB18C06 (US2006112456); Soybean
variety XB10M06 (US2006107391); Soybean variety XBO6K06
(US2006107390); Soybean variety XB28V06 (US2006107389); Soybean
variety XBOO4A06 (US2006107388); Soybean variety XB12L06
(US2006107387); Soybean variety XBOO5A06 (US2006107386); Soybean
variety XB25H06 (US2006107385); Soybean variety XB39WO6
(US2006107384); Soybean variety XB27K06 (US2006107383); Soybean
variety XB29R06 (US2006107382); Soybean variety XB16S06
(US2006107381); Soybean variety XB36V06 (US2006107380); Soybean
variety XBO7N06 (US2006107379); Soybean variety XB23H06
(US2006107378); Soybean variety XB35C06 (US2006107377); Soybean
variety XB32L06 (US2006107376); Soybean variety XB58P06
(US2006107375); Soybean variety XB36M06 (US2006107374); Soybean
variety XB22G06 (US2006107373); Soybean variety XB36Q06
(US2006107372); Soybean variety 91M61 (US2006107371); Soybean
variety XB32A06 (US2006107370); Soybean variety XB19V06
(US2006107369); Soybean variety XB43C06 (US2006107368); Soybean
variety XB22N06 (US2006107367); Soybean variety XB38E06
(US2006107366); Soybean variety XB37U06 (US2006107365); Soybean
variety XB37Q06 (US2006107364); Soybean variety XB00DO6
(US2006107363); Soybean variety XB14N06 (US2006107362); Soybean
variety XB31H06 (US2006107361); Soybean variety XB21Z06
(US2006107360); Soybean variety XBOO5B06 (US2006107359); Soybean
variety XB15WO6 (US2006107358); Soybean variety XB33N06
(US2006107357); Soybean variety XB18WO6 (US2006107356); Soybean
variety XB32M06 (US2006107355); Soybean variety XB19F06
(US2006107354); Soybean variety S03-95021-55-138-AB (U.S. Pat. No.
7,026,531); Soybean variety 94M41 (U.S. Pat. No. 7,002,061);
Soybean variety 91M50 (U.S. Pat. No. 6,998,518); Soybean variety
92B13 (U.S. Pat. No. 6,989,475); Soybean variety 93B68 (U.S. Pat.
No. 6,989,474); Soybean variety 93B09 (U.S. Pat. No. 6,979,759);
Soybean variety 92M00 (U.S. Pat. No. 6,972,352); Soybean variety
XBO8P05 (US2005120433); Soybean variety XB26V05 (US2005150023);
Soybean variety XB21R05 (US2005108795); Soybean variety XB28E05
(US2005114942); Soybean variety XB58K05 (US2005114941); Soybean
variety XB27B05 (US2005114940); Soybean variety XB21S05
(US2005150022); Soybean variety XB26U05 (US2005138695); Soybean
variety XB35K05 (US2005150021); Soybean variety XB18S05
(US2005120436); Soybean variety XB25C05 (US2005120435); Soybean
variety 90M01 (US2005120434); Soybean variety XB22H05
(US2005150020); Soybean variety XB22K05 (US2005114939); Soybean
variety XB58G05 (US2005114938); Soybean variety
XB57U05 (US2005120432); Soybean variety XB49M05 (US2005120431);
Soybean variety XB20D05 (US2005144683); Soybean variety XB41BO5
(US2005150019); Soybean variety XB38T05 (US2005120430); Soybean
variety XB13T05 (US2005120429); Soybean variety XB19Y05
(US2005120428); Soybean variety XB43D05 (US2005120427); Soybean
variety XB40E05 (US2005120426); Soybean variety XB39N05
(US2005120425); Soybean variety 93M01 (US2005120424); SOYBEAN
VARIETY XB31WO5 (US2005223439); Soybean variety XB32C05
(US2005114937); Soybean variety XB40D05 (US2005120423); Soybean
variety 92M61 (US2005120422); Soybean variety 91M91 (US2005114936);
Soybean variety XB33Y05 (US2005120421); Soybean variety XB34A05
(US2005120420); Soybean variety XB13U05 (US2005114935); Soybean
variety XB12K05 (US2005114934); Soybean variety XB30P05
(US2005120419); Soybean variety XB57T05 (US2005114933); Soybean
variety XB17S05 (US2005114932); Soybean variety XB25Y05
(US2005114930); Soybean variety XB25S05 (US2005150017); Soybean
variety XB43WO4 (US2004177420); Soybean variety XB44WO4
(US2004177419); Soybean variety XB53J04 (US2004199960); Soybean
variety XB43VO4 (US2004216192); Soybean variety XB49K04
(US2004172668); Soybean variety XB27P04 (US2004205864); Soybean
variety XB29L04 (US2004177418); Soybean variety XB29K04
(US2004177417); Soybean variety XB41U04 (US2004231017); Soybean
variety XB34D04 (US2004177416); Soybean variety XB09J04
(US2004172711); Soybean variety XB32Y04 (US2004194169); Soybean
variety XB44D04 (US2004172710); Soybean variety XB44C04
(US2004172709); Soybean variety XB10L04 (US2004172708); Soybean
variety XB19U04 (US2004172707); Soybean variety XBO2F04
(US2004172706); Soybean variety XB25X04 (US2004172705); Soybean
variety XB26L04 (US2004172704); Soybean variety XB11F04
(US2004172703); Soybean variety XB40Z04 (US2004177415); Soybean
variety XB40Y04 (US2004181833); Soybean variety XBOO7C04
(US2004181832); Soybean variety 96M20 (US2004172702); Soybean
variety XB39J04 (US2004172701); Soybean variety XB29A04
(US2004172700); Soybean variety XB35P04 (US2004172699); Soybean
variety XB58Z04 (US2004177414); Soybean variety XB43R04
(US2004172698); Soybean variety XB35L04 (US2004172697); Soybean
variety XBO6H04 (US2004172696); Soybean variety XB59U04
(US2004172695); Soybean variety XB64C04 (US2004172694); Soybean
variety 95M80 (US2004172693); Soybean variety XB35Q04
(US2004177413); Soybean variety XBO4D04 (US2004177412); Soybean
variety XBO8L04 (US2004177411); Soybean variety XB18Q04
(US2004177410); Soybean variety XB16Q04 (US2004177409); Soybean
variety XB55K04 (US2004172692); Soybean variety XB57M04
(US2004172691); Soybean variety XB25L04 (US2004205863); Soybean
variety XB48T04 (US2004194168); Soybean variety XB42X04
(US2004199959); Soybean variety XB31T04 (US2004177408); Soybean
variety XB31U04 (US2004194167); Soybean variety XB30E04
(US2004177407); Soybean variety XB31R04 (US2004177406); Soybean
variety S03-95341-A98-60618 (U.S. Pat. No. 6,909,033); Soybean
variety SN97-6946 (US2004168227); Soybean variety 94M70 (U.S. Pat.
No. 6,864,408); Soybean variety 92M70 (U.S. Pat. No. 6,797,866);
Soybean variety 92M71 (U.S. Pat. No. 6,858,782); Soybean variety
91M40 (U.S. Pat. No. 6,828,490); Soybean variety 93M80 (U.S. Pat.
No. 6,849,789); Soybean variety XB39N03 (U.S. Pat. No. 6,864,407);
Soybean variety 93M90 (U.S. Pat. No. 6,846,975); Soybean variety
90M90 (U.S. Pat. No. 6,852,913); Soybean variety 92M72 (U.S. Pat.
No. 6,960,708); Soybean variety 91M90 (U.S. Pat. No. 6,849,788);
Soybean variety 92M50 (U.S. Pat. No. 6,855,876); Soybean variety
92M30 (U.S. Pat. No. 6,951,974); Soybean variety 93M60 (U.S. Pat.
No. 6,797,865); Soybean variety 93M40 (U.S. Pat. No. 6,791,016);
Soybean variety 93M41 (U.S. Pat. No. 6,835,875); Soybean variety
XB15P03 (U.S. Pat. No. 6,797,864); Soybean variety XB24H03 (U.S.
Pat. No. 6,936,752); Soybean variety XB05A03 (U.S. Pat. No.
6,815,585); Soybean variety 92M80 (U.S. Pat. No. 6,849,787);
Soybean variety XB33S03 (U.S. Pat. No. 6,855,875); Soybean variety
XB48P03 (U.S. Pat. No. 6,797,863); Soybean variety XB29X03 (U.S.
Pat. No. 6,806,406); Soybean variety XBO2C03 (U.S. Pat. No.
6,800,795); Soybean variety XB29WO3 (U.S. Pat. No. 6,858,781);
Soybean variety 91M10 (U.S. Pat. No. 6,958,437); Soybean variety
92M10 (U.S. Pat. No. 6,916,975); Soybean variety XB10G03 (U.S. Pat.
No. 6,806,405); Soybean variety 92M31 (U.S. Pat. No. 6,846,974);
Soybean variety XB38D03 (U.S. Pat. No. 6,806,404); Soybean variety
XB34N03 (U.S. Pat. No. 6,803,508); Soybean variety XB30WO3 (U.S.
Pat. No. 6,809,236); Soybean variety XB37J03 (U.S. Pat. No.
6,844,488); Soybean variety SE72581 (US2004148665); Soybean variety
SE90076 (US2004148664); Soybean variety SD82997 (US2004148663);
Soybean variety 0037393 (US2004148662); Soybean variety 0088414
(US2004148661); Soybean variety 0149926 (US2004148660); Soybean
variety 0037209 (US2004148659); Soybean variety 93B36 (U.S. Pat.
No. 6,833,498); Soybean variety 90B74 (U.S. Pat. No. 6,812,384);
Soybean variety 90B51 (U.S. Pat. No. 6,818,809); Soybean variety
91B03 (U.S. Pat. No. 6,815,584); Soybean variety 95B43 (U.S. Pat.
No. 6,818,808); Soybean variety 95B42 (U.S. Pat. No. 6,815,583);
Soybean variety 92B47 (U.S. Pat. No. 6,812,383); Soybean variety
SE90346 (US2004055055); Soybean variety 0007583 (US2004010824);
Soybean variety 0008079 (US2004010823); Soybean variety
S02-AP98041-2-333-01 (US2003121076); Soybean variety
S02-98041-2-251-01 (US2003182694); Soybean variety
S02-AP98041-2-262-02 (US2003196220); Soybean variety
S02-95021-55-240-BA (US2003188348); Soybean variety APA94-31572
(US2003061641); Soybean variety AP98041-1-203 (US2003056251);
Soybean variety APA95-15294 (US2003061640); Soybean variety
AP98041-4-117 (US2003056250); Soybean variety 91B33 (U.S. Pat. No.
6,580,018); Soybean variety 93B85 (U.S. Pat. No. 6,605,762);
Soybean variety 92B76 (U.S. Pat. No. 6,610,911); Soybean variety
92B38 (U.S. Pat. No. 6,605,761); Soybean variety 94B24 (U.S. Pat.
No. 6,613,967); Soybean variety 94B73 (U.S. Pat. No. 6,605,760);
Soybean variety 93B86 (U.S. Pat. No. 6,610,910); Soybean variety
91B12 (U.S. Pat. No. 6,583,343); Soybean variety 95B34 (U.S. Pat.
No. 6,605,759); Soybean variety 94B23 (U.S. Pat. No. 6,605,758);
Soybean variety 90B11 (U.S. Pat. No. 6,583,342); Soybean variety
91B92 (U.S. Pat. No. 6,586,659); Soybean variety 95B96 (U.S. Pat.
No. 6,605,757); Soybean variety 93B72 (U.S. Pat. No. 6,566,589);
Soybean variety 95B97 (U.S. Pat. No. 6,613,966); Soybean variety
92B95 (U.S. Pat. No. 6,608,243); Soybean variety 93B47 (U.S. Pat.
No. 6,583,341); Soybean variety 97B52 (U.S. Pat. No. 6,605,756);
Soybean variety 93B15 (U.S. Pat. No. 6,617,499); Soybean variety
94B54 (U.S. Pat. No. 6,613,965); Soybean variety 93B67 (U.S. Pat.
No. 6,573,433); Soybean variety 93B87 (U.S. Pat. No. 6,727,410);
Soybean variety 96B51 (U.S. Pat. No. 6,613,964); Soybean variety
92B84 (U.S. Pat. No. 6,730,829); Soybean variety 92B12 (U.S. Pat.
No. 6,605,755); Soybean variety 90A07 (U.S. Pat. No. 6,320,105);
Soybean variety 93B26 (U.S. Pat. No. 6,342,659); Soybean variety
96B21 (U.S. Pat. No. 6,369,301); Soybean variety 92B63 (U.S. Pat.
No. 6,326,529); Soybean variety 93B46 (U.S. Pat. No. 6,323,402);
Soybean variety 92B75 (U.S. Pat. No. 6,362,400); Soybean variety
93B08 (U.S. Pat. No. 6,323,401); Soybean variety 97B62 (U.S. Pat.
No. 6,323,400); Soybean variety 92B37 (U.S. Pat. No. 6,323,399);
Soybean variety 92B56 (U.S. Pat. No. 6,339,186); Soybean variety
93B66 (U.S. Pat. No. 6,307,131); Soybean variety 92B62 (U.S. Pat.
No. 6,346,657); Soybean variety 92B36 (U.S. Pat. No. 6,369,300);
Soybean variety 90B73 (U.S. Pat. No. 6,316,700); Soybean variety
95B95 (U.S. Pat. No. 6,323,398); Soybean variety 93B65 (U.S. Pat.
No. 6,229,074); Soybean variety 92B24 (U.S. Pat. No. 6,284,950);
Soybean variety 94B53 (U.S. Pat. No. 6,235,976); Soybean variety
94B22 (U.S. Pat. No. 6,140,557); Soybean variety 93B84 (U.S. Pat.
No. 6,143,956); Soybean variety 95B32 (U.S. Pat. No. 6,229,073);
Soybean variety 95B53 (U.S. Pat. No. 6,147,283); Soybean variety
93B35 (U.S. Pat. No. 6,153,816); Soybean variety 93B07 (U.S. Pat.
No. 6,143,955); Soybean variety 92B74 (U.S. Pat. No. 6,124,526);
Soybean variety 92B35 (U.S. Pat. No. 6,166,296); Soybean variety
94B45 (U.S. Pat. No. 6,162,968); Soybean variety 96B01 (U.S. Pat.
No. 6,143,954); Soybean variety 93B53 (U.S. Pat. No.
6,335,197).
[0603] It is observed that the introgression of the elite events
into these cultivars does not significantly influence any of the
desirable phenotypic or agronomic characteristics of these
cultivars (no yield drag) while expression of the transgene, as
determined by glyphosate and/or isoxaflutole or glufosinate
tolerance, meets commercially acceptable levels.
[0604] The stacks may be advantageously further combined with one
or more other soybean events available in the market, including but
not limited to other herbicide tolerance events, such as events
described in USDA-APHIS petitions: 09-349-01p, 09-201-01p,
09-183-01p, 09-082-01p, 09-015-01p, 06-354-01p, 06-271-01p,
06-178-01p, 98-238-01p, 98-014-01p, 97-008-01p, 96-068-01p,
95-335-01p, 93-258-01p, (see, e.g.,
www.aphis.usda.gov/brs/not_reg.html) or event MON89788 (Glyphosate
tolerance) described in US 2006-282915, event DP-305423-1 (High
oleic acid/ALS inhibitor tolerance) described in WO 2008/054747,
MON87701 described in US2009130071, event 3560.4.3.5 described in
US2009036308, or event DP-305423-1 described in US2008312082, or
event BPS-CV127-9 (Event 127) of WO 2010/080829.
[0605] As used in the claims below, unless otherwise clearly
indicated, the term "plant" is intended to encompass plant tissues,
at any stage of maturity, as well as any cells, tissues, or organs
taken from or derived from any such plant, including without
limitation, any seeds, leaves, stems, flowers, roots, single cells,
gametes, cell cultures, tissue cultures or protoplasts.
[0606] Reference seed comprising elite event EE-GM3 was deposited
as 32-RRMM-0531 at the NCIMB (Ferguson Building, Craibstone Estate,
Bucksburn, Aberdeen AB9YA, Scotland) on Oct. 12, 2009, under NCIMB
accession number NCIMB 41659, and the viability thereof was
confirmed. An alternative name for EE-GM3 is event FG-072, or
MST-FG072-3.
[0607] Reference seed comprising elite event EE-GM1 was deposited
as 32RRMM0368 at the NCIMB (Ferguson Building, Craibstone Estate,
Bucksburn, Aberdeen AB9YA, Scotland) on Oct. 12, 2009, under NCIMB
accession number NCIMB 41658. An alternative name for EE-GM1 is
LL27, A2704-12, or ACS-GM005-3.
[0608] Reference seed comprising elite event EE-GM2 was deposited
as 32CON0688 at the NCIMB (Ferguson Building, Craibstone Estate,
Bucksburn, Aberdeen AB9YA, Scotland) on Oct. 12, 2009, under NCIMB
accession number NCIMB 41660. An alternative name for EE-GM2 is
LL55, A5547-127, or ACS-GM006-4.
[0609] Reference seed comprising elite event EE-GM3 and EE-GM1 was
deposited as 111606 soybean at the ATCC (American Type Culture
Collection, 10801 University Blvd., Manassas, Va. 20110-2209, USA)
on Jun. 11, 2010, under ATCC accession number PTA-11041.
[0610] Reference seed comprising elite event EE-GM3 and EE-GM2 was
deposited as 05SHX2XEB Soybean at the ATCC (American Type Culture
Collection, 10801 University Blvd., Manassas, Va. 20110-2209, USA)
on Jun. 11, 2010, under ATCC accession number PTA-11042.
[0611] The above description of the invention is intended to be
illustrative and not limiting.
[0612] Various changes or modifications in the embodiments
described may occur to those skilled in the art. These can be made
without departing from the spirit or scope of the invention.
Sequence CWU 1
1
2217296DNAArtificial SequenceSalI fragment of vector pSF10
1gtcgactcta gcagatctgg ccggcccacc ggtgggccat atgggcccgc ggccgcgaat
60tcgagctcgg tacctacctg gcgaaagggg gatgtgctgc aaggcgatta agttgggtaa
120cgccagggtt ttcccagtca cgacgttgta aaacgacggc cagtgaattg
cggccgcaat 180tcccgatcta gtaacataga tgacaccgcg cgcgataatt
tatcctagtt tgcgcgctat 240attttgtttt ctatcgcgta ttaaatgtat
aattgcggga ctctaatcat aaaaacccat 300ctcataaata acgtcatgca
ttacatgtta attattacat gcttaacgta attcaacaga 360aattatatga
taatcatcgc aagaccggca acaggattca atcttaagaa actttattgc
420caaatgtttg aacgatcggg gaaattcgtc gagtcaccct cggccgggct
ttttgacgct 480taatcggcgg tcaatacacc acgacgcacc tggtcacgtt
cgatggactc gaacagcgcc 540ttgaagttcc actcgccaaa cccatcgtcg
cccttgcgct ggatgaattc gaagaacacc 600gggcccatca gggtttccga
gaagatctgc agcagcaggc gtttgtcgcc ttccacggaa 660gatccgtcca
gcaggatacc gcgtgcctgc agttgatcca ccggctcgcc gtggtcaggc
720aggcggcctt cgagcatttc gtaataagtg tctggcggcg cggtcatgaa
gcgcatgccg 780attttcttca acgcgtccca ggtcttgacc aggtcgtcgg
tgaggaacgc cacgtgctgg 840atgccttcgc cgttgaactg catcaggaac
tcttcgatct gccccgcgcc cttggacgac 900tcttcgttca gcgggatgcg
gatcatgccg tccggcgcac tcatggcctt ggaagtcagg 960ccggtgtact
cgcccttgat atcgaagtaa cgcgcttcac ggaagttgaa caatttctcg
1020tagaagttgg cccagtagac catgcggccg cgatagacgt tgtgggtcag
gtggtcgatg 1080actttgagac ctgcaccgac cggattgcgc tccacacctt
cgaggtacac gaagtcgatg 1140tcgtagatcg agctgccttc gccgaaacgg
tcgatcaggt acaacggcgc gccgccgatg 1200cccttgatcg ccggcaggtt
caattccatc ggcccggtgt caatatggat cggctgggcg 1260ccgagttcca
gggcgcggtt gtaggccttt tgcgagtcct tcacgcggaa cgccatgccg
1320cacaccgacg ggccgtgttc ggccgcaaag taggaggcga tgctgttggg
ctcgttgttg 1380aggatcaggt tgatctcgcc ctggcggtac aggtgcacgt
tcttggaacg gtgggtcgcg 1440actttggtga agcccatgat ctcgaagatc
ggctccaggg tacccggcgt cggcgacgcg 1500aattcgatga attcaaagcc
catcaggccc attgggtttt cgtatagatc tgccatgcac 1560cggatccttc
cgccgttgct gacgttgccg aggcttctgg aggagcggcg ggcgacgggg
1620aggctggcgg tggacttgag cccctggaac ggagcgacgg cggtggccga
cgaggccatc 1680atcacggtgg gcgccataga cagcggcggc aggtacgaca
gcgtctcgaa cttcttgttg 1740ccgtaggccg gccacacctg catatattga
actcttccac cgttgctggg aagggtggag 1800aagtcgttag ccttcttggt
ggtggggaag gcggcgttgg acttaaggcc ggtgaacgga 1860gccaccatgt
tggcctgagc aggggcggtc cggctaacgg tcgcgactga ggaggagatc
1920gaagccatgg ctatcgttcg taaatggtga aaattttcag aaaattgctt
ttgctttaaa 1980agaaatgatt taaattgctg caatagaagt agaatgcttg
attgcttgag attcgtttgt 2040tttgtatatg ttgtgtttcg aattctagag
tcgagagaaa ttgatgtctg tagaagaaga 2100agaacggtta agagtagatt
tgggtgagaa agatgtgaaa ttgtttttat aggcaaagac 2160ggagagtcta
ttttttgagc aatcagatcg catattaaat ctaacggctg agatatcgat
2220ccgtgtgtac aataaaatga tgtataaacc gtcgatctgt tttaatcgac
ggttcatatt 2280agtgatccgc gtgatggcag tgatagccac taagaatcgt
cttttgtttt acatgtggcg 2340ccacaaatta gggtaatgaa gcggcaatat
tttggaactc ggaaaataaa attgcgccat 2400cacattattt gaaaattttc
acatgctttt attttaaaaa cccacgaatt acaagttaca 2460accgaaaaag
atttataata tagtgattta tactaatttt gtagtagctt aatgtatatt
2520gatactggaa aaacaatgac aatcatacga tccgtgtgta caataaaatg
atgtataaac 2580cgtcgatctg ttttaatcga cggttcatat tagtgatccg
cgtgatggca gtgatagcca 2640ctaagaatcg tcttttgttt tacatgtggc
gccacaaatt agggtaatga agcggcaata 2700ttttggaact cggaaaataa
aattgcgcca tcacattatt tgaaaatttt cacatgcttt 2760tattttaaaa
acccacgaat tacaagttac aaccgaaaaa gatttataat atagtgattt
2820atactaattt tgtagtagct taatgtatat tgatactgga aaaacaatga
caatcatatg 2880ttagtattat caagttatcg tattgatatt gatattggaa
catacaatgg gtattgcctt 2940ctttcgacca taaatatcac caaatttaca
aagtttgtgt ataccaagtt atcaattgta 3000aatgggatgt caacatttta
atttcccttt gagaaactat agaccacaag aacacacttc 3060aatagataaa
gtaactattt acataagagg ttttaaaatc acattaacaa aaataattac
3120caaccggcac tcacaaatac aaacagagca cacgacatgt caaagccaca
agtaaattcg 3180ttgagtggtg gtttcattac aattgtgtca cttgcagcac
aaactatctt gctctgggaa 3240tcatctcagc atcaaagatc atgctcactt
caggggaact tagtgtatcc atgcctcgac 3300tcatatttct cctcgacctg
caggcatgca agctctagag cggccgccac cgcggtggag 3360gtactcgagt
cgcgacgtac gttcgaacaa ttggttttaa aagcttgcat gcctgcaggt
3420cgaggagaaa tatgagtcga ggcatggata cactaagttc ccctgaagtg
agcatgatct 3480ttgatgctga gatgattccc agagcaagat agtttgtgct
gcaagtgaca caattgtaat 3540gaaaccacca ctcaacgaat ttacttgtgg
ctttgacatg tcgtgtgctc tgtttgtatt 3600tgtgagtgcc ggttggtaat
tatttttgtt aatgtgattt taaaacctct tatgtaaata 3660gttactttat
ctattgaagt gtgttcttgt ggtctatagt ttctcaaagg gaaattaaaa
3720tgttgacatc ccatttacaa ttgataactt ggtatacaca aactttgtaa
atttggtgat 3780atttatggtc gaaagaaggc aatacccatt gtatgttcca
atatcaatat caatacgata 3840acttgataat actaacatat gattgtcatt
gtttttccag tatcaatata cattaagcta 3900ctacaaaatt agtataaatc
actatattat aaatcttttt cggttgtaac ttgtaattcg 3960tgggttttta
aaataaaagc atgtgaaaat tttcaaataa tgtgatggcg caattttatt
4020ttccgagttc caaaatattg ccgcttcatt accctaattt gtggcgccac
atgtaaaaca 4080aaagacgatt cttagtggct atcactgcca tcacgcggat
cactaatatg aaccgtcgat 4140taaaacagat cgacggttta tacatcattt
tattgtacac acggatcgat atctcagccg 4200ttagatttaa tatgcgatct
gattgctcaa aaaatagact ctccgtcttt gcctataaaa 4260acaatttcac
atctttctca cccaaatcta ctcttaaccg ttcttcttct tctacagaca
4320tcaatttctc tcgactctag aggatccaag cttatcgatt tcgaacccct
caggcgaaga 4380acaggtatga tttgtttgta attagatcag gggtttaggt
ctttccatta ctttttaatg 4440ttttttctgt tactgtctcc gcgatctgat
tttacgacaa tagagtttcg ggttttgtcc 4500cattccagtt tgaaaataaa
ggtccgtctt ttaagtttgc tggatcgata aacctgtgaa 4560gattgagtct
agtcgattta ttggatgatc cattcttcat cgtttttttc ttgcttcgaa
4620gttctgtata accagatttg tctgtgtgcg attgtcatta cctagccgtg
tatcgagaac 4680tagggttttc gagtcaattt tgcccctttt ggttatatct
ggttcgataa cgattcatct 4740ggattagggt tttaagtggt gacgtttagt
attccaattt cttcaaaatt tagttatgga 4800taatgaaaat ccccaattga
ctgttcaatt tcttgttaaa tgcgcagatc cccatggctt 4860cgatctcctc
ctcagtcgcg accgttagcc ggaccgcccc tgctcaggcc aacatggtgg
4920ctccgttcac cggccttaag tccaacgccg ccttccccac caccaagaag
gctaacgact 4980tctccaccct tcccagcaac ggtggaagag ttcaatgtat
gcaggtgtgg ccggcctacg 5040gcaacaagaa gttcgagacg ctgtcgtacc
tgccgccgct gtctatggcg cccaccgtga 5100tgatggcctc gtcggccacc
gccgtcgctc cgttccaggg gctcaagtcc accgccagcc 5160tccccgtcgc
ccgccgctcc tccagaagcc tcggcaacgt cagcaacggc ggaaggatcc
5220ggtgcatggc cggcgccgag gagatcgtgc tgcagcccat caaggagatc
tccggcaccg 5280tcaagctgcc ggggtccaag tcgctttcca accggatcct
cctactcgcc gccctgtccg 5340aggggacaac agtggttgat aacctgctga
acagtgagga tgtccactac atgctcgggg 5400ccttgaggac tcttggtctc
tctgtcgaag cggacaaagc tgccaaaaga gctgtagttg 5460ttggctgtgg
tggaaagttc ccagttgagg atgctaaaga ggaagtgcag ctcttcttgg
5520ggaatgctgg aatcgcaatg cggtccttga cagcagctgt tactgctgct
ggtggaaatg 5580caacttacgt gcttgatgga gtaccaagaa tgagggagag
acccattggc gacttggttg 5640tcggattgaa gcagcttggt gcagatgttg
attgtttcct tggcactgac tgcccacctg 5700ttcgtgtcaa tggaatcgga
gggctacctg gtggcaaggt caagctgtct ggctccatca 5760gcagtcagta
cttgagtgcc ttgctgatgg ctgctccttt ggctcttggg gatgtggaga
5820ttgaaatcat tgataaatta atctccattc cgtacgtcga aatgacattg
agattgatgg 5880agcgttttgg tgtgaaagca gagcattctg atagctggga
cagattctac attaagggag 5940gtcaaaaata caagtcccct aaaaatgcct
atgttgaagg tgatgcctca agcgcaagct 6000atttcttggc tggtgctgca
attactggag ggactgtgac tgtggaaggt tgtggcacca 6060ccagtttgca
gggtgatgtg aagtttgctg aggtactgga gatgatggga gcgaaggtta
6120catggaccga gactagcgta actgttactg gcccaccgcg ggagccattt
gggaggaaac 6180acctcaaggc gattgatgtc aacatgaaca agatgcctga
tgtcgccatg actcttgctg 6240tggttgccct ctttgccgat ggcccgacag
ccatcagaga cgtggcttcc tggagagtaa 6300aggagaccga gaggatggtt
gcgatccgga cggagctaac caagctggga gcatctgttg 6360aggaagggcc
ggactactgc atcatcacgc cgccggagaa gctgaacgtg acggcgatcg
6420acacgtacga cgaccacagg atggcgatgg ctttctccct tgccgcctgt
gccgaggtcc 6480ccgtcaccat ccgggaccct gggtgcaccc ggaagacctt
ccccgactac ttcgatgtgc 6540tgagcacttt cgtcaagaat taagctctag
aactagtgga tcccccgatc cgcgtttgtg 6600ttttctgggt ttctcactta
agcgtctgcg ttttactttt gtattgggtt tggcgtttag 6660tagtttgcgg
tagcgttctt gttatgtgta attacgcttt ttcttcttgc ttcagcagtt
6720tcggttgaaa tataaatcga atcaagtttc actttatcag cgttgtttta
aattttggca 6780ttaaattggt gaaaattgct tcaattttgt atctaaatag
aagagacaac atgaaattcg 6840acttttgacc tcaaatcttc gaacatttat
ttcctgattt cacgatggat gaggataacg 6900aaagggcggt tcctatgtcc
gggaaagttc ccgtagaaga caatgagcaa agctactgaa 6960acgcggacac
gacgtcgcat tggtacggat atgagttaaa ccgactcaat tcctttatta
7020agacataaac cgattttggt taaagtgtaa cagtgagctg atataaaacc
gaaacaaacc 7080ggtacaagtt tgattgagca acttgatgac aaacttcaga
attttggtta ttgaatgaaa 7140atcatagtct aatcgtaaaa aatgtacaga
agaaaagcta gagcagaaca aagattctat 7200attctggttc caatttatca
tcgctttaac gtccctcaga tttgatcggg ctgcaggaat 7260taaacgcccg
ggcacgtggg atcctctaga gtcgac 729621843DNAArtificial Sequence5'
flanking region of the foreign DNA comprising herbicide tolerance
genes in EE-GM3 2gacttccatg tctagattca ttgtactaag atttcaaacg
atatatatat atatatatat 60atatatattc aattacatct ttttcaaaaa acatatatgc
atcgtatttt ctaatacatt 120tttttatata tgttattagt taaaatttat
taaaaatcat aaaattaagt aagtttcaca 180taacatccaa tgattttctc
gtaattttaa gactggacta aagaatatag tagtaacact 240tctcttcaaa
taatatactt tatttgcccg aggaatagca ttgccatatt gaactattag
300gaaagctgaa catcaattgg tacacttgga tggttcccac ggtttattat
tgtctacatc 360tggtcatcca agcagaggtt atatcttcta taactcgaca
aatcttcgtt gtgcctatat 420agagttgctt gtacgactaa aacgcttata
ataatcgtta tacaatctat gattcacagt 480tatgatacgt gtatgcaata
aatgaataga tagataaata tgatacaatt atacaattat 540tctaaaatat
atagaataca atatatgtat gtataaaaaa ttcataaaac accaataagc
600atataattgc aattttgcaa aaccaaatta agaatataac tcaaatatta
ctagaaacaa 660aaaaaattat aaatcattgt cttcataaat taattctaag
tatctacaaa tagaaataat 720atgaatttta tataaaaaag taatataaat
tttattcctt tcttaaattt atgaaaaata 780atacttctat atttctatac
atgtttctat acatgcgttt caatgtctga tagtgatagg 840aaactctact
gtattttcaa aagttttttt ttgtttaaat atattttttg tcatgtaatt
900gtgtgtgttt tcatttacgt ccatgtaaaa agaaaatatt ttagttctat
taaaatattt 960tttttatttt ttatccttaa aatactttaa ataatatttt
ttcctattta aagcattttt 1020tataatttaa agcgctattt aaaacgtttt
tagaataaaa acataaaaca aacacatttt 1080aaaatgattg aaatgaaaaa
taaaactaat gaaaacgaaa acaatactaa attacaggaa 1140agaaaaatat
attcaaactt ttatgtttaa aggtttttga atatttctct gattcgtttg
1200aaatatgtga agaaaattaa aatatcaagt agtaggttac aacagttcgg
gtgcaacagt 1260gactatgaca gcaagataat agggccaata tatttggata
cctctcttaa gacgtaaaca 1320ttttgagcga gaaaataatg gaaaaaaaat
aagtcattca aatgataata gatatataaa 1380ttatttttta ttttaaatat
cttattaata tttttatttt tttatcatat tataaattat 1440attatattta
tgtagctttg ctcattgtct tctacgggaa ctttcccgga cataggaacc
1500gccctttcgt tatcctcatc catcgtgaaa tcaggaaata aatgttcgaa
gatttgaggt 1560caaaagtcga atttcatgtt gtctcttcta tttagataca
aaattgaagc aattttcacc 1620aatttaatgc caaaatttaa aacaacgctg
tcctgatttc acgatggatg aggataacga 1680aagggcggtt cctatgtccg
ggaaagttcc cgtagaagac aatgagcaaa gctactgaaa 1740cgcggacacg
acgtcgcatt ggtacggata tgagttaaac cgactcaatt cctttattaa
1800gacataaacc gattttggtt aaagtgtaac agtgagctga tat
184331408DNAArtificial Sequence3' flanking sequence of foreign DNA
comprising herbicide tolerance genes in EE-GM3 3taacagtgag
ctgatataaa accgaaacaa accggtacaa gtttgattga gcaacttgat 60gacaaacttc
agaattttgg ttattgaatg aaaatcatag tctaatcgta aaaaatgtac
120agaagaaaag ctagagcaga acaaagattc tatattctgg ttccaattta
tcatcgcttt 180aacgtccctc agatttgatc gggctgcagg aattaatgtg
gttcatccgt ctttttgtta 240atgcggtcat caatacgtgc ctcaaagatt
gccaaataga ttaatgtggt tcatctccct 300atatgttttg cttgttggat
tttgctatca catgtttatt gctccaaact aattataata 360aaatgacttt
caaatgattg gtgttgacat tcttttcaaa ttgttcgctg aagaaaagat
420aatctcgagg ccttgatttg ttaatgcttt cattaataaa taaataaaat
aactctttcc 480aaatttcaat tcatgctttt atattgtgtg gttcatcctc
atcttatgtc actattatca 540tttcatgttt gagactttac ttggccatat
ttgagaagac cttcttcatt ataggcaatt 600ttatctccac aataatataa
gagaatatct tgaattaata attattgagg atatattata 660gggttctatg
tggaactaaa gacatggtta ccccattaag agagagtata gaggaattac
720ttttatttgc cacgaggcga cgcgacttgt atttattttg gaattgtact
tttgcgtgag 780cagtgtggct ctatgttggg gcctccactt gttggtgttt
tatatatgtg aaaggaggat 840gagggtgatg gttcatttct ttgcattatt
tttgttattc gcgcgaatga tatatgccct 900gtttttgaag attgataggg
aagtccatat ataggaattg aagtgtcaaa agggtgtgag 960tatgtgctat
gataatcacc caattaatgt acatctggtg tggtgtttga atttgtaggt
1020cattaattaa tattcctctt ggtgaagttt ggagttcttt tgcaattaca
attctgtttt 1080gtaagtgatt atgatggact tttagatgtt tctcaaacag
taggtgtaaa gaaaaatggg 1140ccctggtatg aaaatttgtt ttcactcttt
ctcattcata tctttaaaaa aagaatgata 1200attttgtaat aaaaataaaa
aaatattaaa tattttctca aatcaaacaa cctttatttt 1260ttatgccaac
aataattttg ttaaagatgg agatttcaat tattatataa gagttcatta
1320tagttgaaaa ttgaatgaat gtatatgttt acgttttttg tctcaagtga
aactaagatc 1380aaatattcat atctattgag ctggtctt 1408420DNAArtificial
Sequenceprimer SOY028 4atcgctttaa cgtccctcag 20518DNAArtificial
Sequenceprimer SOY029 5caaggcctcg agattatc 18620DNAArtificial
Sequenceprimer SMP187 6atatcaaccc gtagctcgac 20723DNAArtificial
Sequenceprimer STV019 7ggcattaaat tggtgaaaat tgc
238263DNAArtificial Sequencenucleotide sequence of PCR amplicon
using primers SOY028 - SOY029 8atcgctttaa cgtccctcag atttgatcgg
gctgcaggaa ttaatgtggt tcatccgtct 60ttttgttaat gcggtcatca atacgtgcct
caaagattgc caaatagatt aatgtggttc 120atctccctat atgttttgct
tgttggattt tgctatcaca tgtttattgc tccaaactaa 180ttataataaa
atgactttca aatgattggt gttgacattc ttttcaaatt gttcgctgaa
240gaaaagataa tctcgaggcc ttg 263920DNAArtificial Sequenceprimer 1
for amplication of control fragment (SOY01) 9gtcagccaca cagtgcctat
201020DNAArtificial Sequenceprimer 2 for amplication of control
fragment (SOY02) 10gttaccgtac aggtctttcc 20114076DNAArtificial
Sequencenucleotide sequence of pB2/P35SAcK 11tcgcgcgttt cggtgatgac
ggtgaaaacc tctgacacat gcagctcccg gagacggtca 60cagcttgtct gtaagcggat
gccgggagca gacaagcccg tcagggcgcg tcagcgggtg 120ttggcgggtg
tcggggctgg cttaactatg cggcatcaga gcagattgta ctgagagtgc
180accatatgca aacaaacata cacagcgact tatgctcaaa ttacaacggt
atatatcctg 240ccacatatgc ggtgtgaaat accgcacaga tgcgtaagga
gaaaataccg catcaggcgc 300cattcgccat tcaggctgcg caactgttgg
gaagggcgat cggtgcgggc ctcttcgcta 360ttacgccagc tggcgaaagg
gggatgtgct gcaaggcgat taagttgggt aacgccaggg 420ttttcccagt
cacgacgttg taaaacgacg gccagtgaat tcccatggag tcaaagattc
480aaatagagga cctaacagaa ctcgccgtaa agactggcga acagttcata
cagagtctct 540tacgactcaa tgacaagaag aaaatcttcg tcaacatggt
ggagcacgac acgcttgtct 600actccaaaaa tatcaaagat acagtctcag
aagaccaaag ggcaattgag acttttcaac 660aaagggtaat atccggaaac
ctcctcggat tccattgccc agctatctgt cactttattg 720tgaagatagt
ggaaaaggaa ggtggctcct acaaatgcca tcattgcgat aaaggaaagg
780ccatcgttga agatgcctct gccgacagtg gtcccaaaga tggaccccca
cccacgagga 840gcatcgtgga aaaagaagac gttccaacca cgtcttcaaa
gcaagtggat tgatgtgata 900tctccactga cgtaagggat gacgcacaat
cccactatcc ttcgcaagac ccttcctcta 960tataaggaag ttcatttcat
ttggagagga cagggtaccc ggggatccac catgtctccg 1020gagaggagac
cagttgagat taggccagct acagcagctg atatggccgc ggtttgtgat
1080atcgttaacc attacattga gacgtctaca gtgaacttta ggacagagcc
acaaacacca 1140caagagtgga ttgatgatct agagaggttg caagatagat
acccttggtt ggttgctgag 1200gttgagggtg ttgtggctgg tattgcttac
gctgggccct ggaaggctag gaacgcttac 1260gattggacag ttgagagtac
tgtttacgtg tcacataggc atcaaaggtt gggcctagga 1320tccacattgt
acacacattt gcttaagtct atggaggcgc aaggttttaa gtctgtggtt
1380gctgttatag gccttccaaa cgatccatct gttaggttgc atgaggcttt
gggatacaca 1440gcccggggta cattgcgcgc agctggatac aagcatggtg
gatggcatga tgttggtttt 1500tggcaaaggg attttgagtt gccagctcct
ccaaggccag ttaggccagt tacccagatc 1560tgagtcgacc tgcaggcatg
cccgctgaaa tcaccagtct ctctctacaa atctatctct 1620ctctataata
atgtgtgagt agttcccaga taagggaatt agggttctta tagggtttcg
1680ctcatgtgtt gagcatataa gaaaccctta gtatgtattt gtatttgtaa
aatacttcta 1740tcaataaaat ttctaattcc taaaaccaaa atccagggcg
agctcgaatt cgagctcggt 1800acccggggat cctctagagt cgacctgcag
gcatgcaagc ttggcgtaat catggtcata 1860gctgtttcct gtgtgaaatt
gttatccgct cacaattcca cacaacatac gagccggaag 1920cataaagtgt
aaagcctggg gtgcctaatg agtgagctaa ctcacattaa ttgcgttgcg
1980ctcactgccc gctttccagt cgggaaacct gtcgtgccag ctgcattaat
gaatcggcca 2040acgcgcgggg agaggcggtt tgcgtattgg gcgctcttcc
gcttcctcgc tcactgactc 2100gctgcgctcg gtcgttcggc tgcggcgagc
ggtatcagct cactcaaagg cggtaatacg 2160gttatccaca gaatcagggg
ataacgcagg aaagaacatg tgagcaaaag gccagcaaaa 2220ggccaggaac
cgtaaaaagg ccgcgttgct ggcgtttttc cataggctcc gcccccctga
2280cgagcatcac aaaaatcgac gctcaagtca gaggtggcga aacccgacag
gactataaag 2340ataccaggcg tttccccctg gaagctccct cgtgcgctct
cctgttccga ccctgccgct 2400taccggatac ctgtccgcct ttctcccttc
gggaagcgtg gcgctttctc atagctcacg 2460ctgtaggtat ctcagttcgg
tgtaggtcgt tcgctccaag ctgggctgtg tgcacgaacc 2520ccccgttcag
cccgaccgct gcgccttatc cggtaactat cgtcttgagt ccaacccggt
2580aagacacgac ttatcgccac tggcagcagc cactggtaac aggattagca
gagcgaggta 2640tgtaggcggt gctacagagt tcttgaagtg gtggcctaac
tacggctaca ctagaagaac 2700agtatttggt atctgcgctc tgctgaagcc
agttaccttc ggaaaaagag ttggtagctc 2760ttgatccggc aaacaaacca
ccgctggtag cggtggtttt tttgtttgca agcagcagat 2820tacgcgcaga
aaaaaaggat ctcaagaaga tcctttgatc ttttctacgg ggtctgacgc
2880tcagtggaac gaaaactcac gttaagggat tttggtcatg agattatcaa
aaaggatctt 2940cacctagatc cttttaaatt aaaaatgaag ttttaaatca
atctaaagta tatatgagta 3000aacttggtct gacagttacc aatgcttaat
cagtgaggca cctatctcag cgatctgtct 3060atttcgttca tccatagttg
cctgactccc cgtcgtgtag ataactacga
tacgggaggg 3120cttaccatct ggccccagtg ctgcaatgat accgcgagac
ccacgctcac cggctccaga 3180tttatcagca ataaaccagc cagccggaag
ggccgagcgc agaagtggtc ctgcaacttt 3240atccgcctcc atccagtcta
ttaattgttg ccgggaagct agagtaagta gttcgccagt 3300taatagtttg
cgcaacgttg ttgccattgc tacaggcatc gtggtgtcac gctcgtcgtt
3360tggtatggct tcattcagct ccggttccca acgatcaagg cgagttacat
gatcccccat 3420gttgtgcaaa aaagcggtta gctccttcgg tcctccgatc
gttgtcagaa gtaagttggc 3480cgcagtgtta tcactcatgg ttatggcagc
actgcataat tctcttactg tcatgccatc 3540cgtaagatgc ttttctgtga
ctggtgagta ctcaaccaag tcattctgag aatagtgtat 3600gcggcgaccg
agttgctctt gcccggcgtc aatacgggat aataccgcgc cacatagcag
3660aactttaaaa gtgctcatca ttggaaaacg ttcttcgggg cgaaaactct
caaggatctt 3720accgctgttg agatccagtt cgatgtaacc cactcgtgca
cccaactgat cttcagcatc 3780ttttactttc accagcgttt ctgggtgagc
aaaaacagga aggcaaaatg ccgcaaaaaa 3840gggaataagg gcgacacgga
aatgttgaat actcatactc ttcctttttc aatattattg 3900aagcatttat
cagggttatt gtctcatgag cggatacata tttgaatgta tttagaaaaa
3960taaacaaata ggggttccgc gcacatttcc ccgaaaagtg ccacctgacg
tctaagaaac 4020cattattatc atgacattaa cctataaaaa taggcgtatc
acgaggccct ttcgtc 407612720DNAArtificial Sequencenucleotide
sequence comprising the 5' region flanking the foreign DNA in
EE-GM1 12gagaagaaaa aggaaggcat taagagaccc tcctggcaca accctagaca
ctctaagatc 60ctttttcaaa cctgctccca ccatttcgag tcaagagata gataaataga
cacatctcat 120tgcaccgatc gggggcgttc gtagtgactg agggggtcaa
agaccaagaa gtgagttatt 180tatcagccaa gcattctatt cttcttatgt
cggtgcgggc ctcttcgcta ttacgccagc 240tggcgaaagg gggatgtgct
gcaaggcgat taagttgggt aacgccaggg ttttcccagt 300cacgacgttg
taaaacgacg gccagtgaat tcccatggag tcaaagattc aaatagagga
360cctaacagaa ctcgccgtaa agactggcga acagttcata cagagtctct
tacgactcaa 420tgacaagaag aaaatcttcg tcaacatggt ggagcacgac
acgcttgtct actccaaaaa 480tatcaaagat acagtctcag aagaccaaag
ggcaattgag acttttcaac aaagggtaat 540atccggaaac ctcctcggat
tccattgccc agctatctgt cactttattg tgaagatagt 600ggaaaaggaa
ggtggctcct acaaatgcca tcattgcgat aaaggaaagg ccatcgttga
660agatgcctct gccgacagtg gtcccaaaga tggaccccca cccacgagga
gcatcgtgga 720131000DNAArtificial Sequencenucleotide sequence
comprising the 3' region flanking the foreign DNA in EE-GM1
13ttcggtgtag gtcgttcgct ccaagctggg ctgtgtgcac gaaccccccg ttcagcccga
60ccgctgcgcc ttatccggta actatcgtct tgagtccaac ccggtaagac acgacttatc
120gccactggca gcagccactg gtaacaggat tagcagagcg aggtatgtag
gcggtgctac 180agagttcttg aagtggtggc ctaactacgg ctacactaga
agaacagtat ttggtatctg 240cgctctgctg aagccagtta ccttcggaaa
aagagttggt agctcttgat ccggcaaaca 300aaccaccgct ggtagcggtg
gtttttttgt ttgcaagcag cagattacgc gcagaaaaaa 360aggatctcaa
gaagatcctt tgatcttttc tacggggtct gacgctcagt ggaacgaaaa
420ctcacgttaa gggattttgg tcatgagatt atcaaaaagg atcttcacct
agatcctttt 480aaattaaaaa tgaagtttta aatcaatcta aagtatatat
gagtaaactt ggtctgacag 540ttaccaatgc ttaatcagtg aggcaccttt
aatctagatg atctgtctca actttaccaa 600aagttttgag cacatgtttg
gattcacctt aaataatcta aaatcacagc ttgtttgatc 660ccaaaggagt
taattctaag taaaattgat tgagttaaaa caattgtgtt agatagagaa
720attttctttg aataaaaaca tctagacaca aatcatttca cttcaaaata
attttaaaca 780aaataaattt tgcaattcat tcatccaaac aaacatttga
attaactata atcaattcaa 840attgttacag tgtgttgcat tcatatcatt
cctaataagt ctacattaaa gattaagagt 900gagaatgaga ggaagagaga
acggtttcag ggttaaccct ttgtttggaa gaaccatcaa 960acagtggcaa
cggatcatcc ttgctgcaaa acatagcttt 100014810DNAArtificial
Sequencenucleotide sequence comprising the 5' region flanking the
foreign DNA in EE-GM2 14gtcatcgtcg tcgcgctgga gttcttgtgg tgccgctggt
cgcactggag tttgggtgtt 60gttgttcatg cttgcgctgc taatcccctt ttgtatgcga
aaatcgggtt tgggtcgggt 120cgggtcagcc caacacgacc taatttgtgt
tacgaaaatt tcaacaaaaa aaaaaagtta 180tcttccgcca ttatcgccat
tccgccacga tcattaaggc tatggcggcc gcaatggcgc 240cgccatatga
aacccgcaat gccatcgcta tttggtggca tttttccaaa aacccgcaat
300gtcataccgt catcgttgtc agaagtaagt tggccgcagt gttatcactc
atggttatgg 360cagcactgca taattctctt actgtcatgc catccgtaag
atgcttttct gtgactggtg 420agtactcaac caagtcattc tgagaatagt
gtatgcggcg accgagttgc tcttgcccgg 480cgtcaatacg ggataatacc
gcgccacata gcagaacttt aaaagtgctc atcattggaa 540aacgttcttc
ggggcgaaaa ctctcaagga tcttaccgct gttgagatcc agttcgatgt
600aacccactcg tgcacccaac tgatcttcag catcttttac tttcaccagc
gtttctgggt 660gagcaaaaac aggaaggcaa aatgccgcaa aaaagggaat
aacgccaggg ttttcccagt 720cacgacgttg taaaacgacg gccagtgaat
tcccatggag tcaaagattc aaatagagga 780cctaacagaa ctcgccgtaa
agactggcga 810151880DNAArtificial Sequencenucleotide sequence
comprising the 3' region flanking the foreign DNA in EE-GM2
15cttttaaatt aaaaatgaag ttttaaatca atctaaagta tatatgagta aacttggtct
60gacagttacc aatgcttaat cagtgaggca cctatctcag cgatctgtct atttcgttca
120tccatagttg cctgactccc cgtcgtgtag ataactacga tacgggaggg
cttaccatct 180ggccccagtg ctgcaatgat accgcgagac ccacgctcac
cggctccaga tttatcagca 240ataaaccagc cagccggaag ggccgagcgc
agaagtggtc ctgcaacttt atccgcctcc 300atccagtcta ttaattgttg
ccgggaagct agagtaagta gttcgccagt taatagtttg 360cgcaacgttg
ttgccattgc tacaggcatc gtggtgtcac gctcgtcgtt tggtatggct
420tcattcagct ccggttccca acgatcaagg cgagttacat gatcccccat
gttgtgcaaa 480aaagcggtta gctccttcgg tcctccgatg gcaccgccat
aaccacaatt taacaacttt 540ataaatgact tagtatatta gcaatttatc
ttgtcacatg cacatatttt ataactataa 600taggagtttg agtttaaatg
atgtaatgaa ttttggattg catgttgttt tgtactatat 660tggtagcttt
ttccaatgaa gtgttaaatt tgtatttttc atattcaggg tcacgtttga
720ccttctctag tcactgccct aattaagccc tttctcttgc actcttgatg
cttacttaac 780ctgggcatca ggcatatgta atgttatcaa tcaaactatc
acgtttcatg catttattaa 840tcttcattga tgcccttgtc tcgctcttgc
ccctttttcc aatttatgct tcaaatcttt 900gacatgttcc atgtccttat
tccttttctc tgtaactgtt cattttcgtt atgaaccatg 960aagataaact
actattgtta aagtctcggt tcaaatttaa cttttctgct tttccccata
1020taattgaata agacttggtc gtggttgttc tcattgcata tacctttatt
atatgcatag 1080aagtgatttt tttgcctaac ttgtacattt ttttatggca
gtgatganga tgtagagagg 1140cttatcgagc ttgtgaaggg aatttcttgc
aagattaatc taatctcatt caatccgcac 1200agtggatcat tcttcaaacc
aaccaaatat gaaaggatga ttgaattccg aaatacattg 1260gctggggcag
gattgatagt atttttaaga cttagtagag gtgatgatca attggcttcc
1320tgtggtcaat tgggtaagcc tggcaccatt caagctccat ttcttcgtgt
accagagcaa 1380ttccaaatgg caattggaag ttcaacttga ttctttgtgg
aggttctgtg gcaaattgat 1440cttacagtta ttaacgaaga attatatagg
acacttgtgg tgggggtagc tagggatgac 1500ttcatactga caatgcaaga
ccaagagcta aattaggggg atgtctgtct gttttcatat 1560tgtacttttc
cattttacag ttaattgata tatttttttt tattaatgtg acggatccag
1620attacttact ggctaagaaa taagaaataa aaatgattta aatatatttt
tagtcgaagt 1680ctgtattttt tagtttccca aattaaaatt tgcatttttt
aatctctcat ttataaaatg 1740cctttttaag ttcttcttag ctgatttttg
gcaacttgga tgcacaatgt gcaactatcg 1800taacaatatt tttcttgaaa
tttaaagaga ctaaaatata tgttttacca taacactcat 1860gttagtaaaa
ccattatttg 18801620DNAArtificial Sequenceprimer SOY06 16ggcgttcgta
gtgactgagg 201721DNAArtificial Sequenceprimer SOY 07 17gttttacaac
gtcgtgactg g 211821DNAArtificial Sequenceprimer SOY 09 18tgtggttatg
gcggtgccat c 211921DNAArtificial SequenceSOY 010 19tgctacaggc
atcgtggtgt c 212017806DNAArtificial Sequencenucleotide sequence of
a foreign DNA and flanking plant sequences in EE-GM3 20gacttccatg
tctagattca ttgtactaag atttcaaacg atatatatat atatatatat 60atatatattc
aattacatct ttttcaaaaa acatatatgc atcgtatttt ctaatacatt
120tttttatata tgttattagt taaaatttat taaaaatcat aaaattaagt
aagtttcaca 180taacatccaa tgattttctc gtaattttaa gactggacta
aagaatatag tagtaacact 240tctcttcaaa taatatactt tatttgcccg
aggaatagca ttgccatatt gaactattag 300gaaagctgaa catcaattgg
tacacttgga tggttcccac ggtttattat tgtctacatc 360tggtcatcca
agcagaggtt atatcttcta taactcgaca aatcttcgtt gtgcctatat
420agagttgctt gtacgactaa aacgcttata ataatcgtta tacaatctat
gattcacagt 480tatgatacgt gtatgcaata aatgaataga tagataaata
tgatacaatt atacaattat 540tctaaaatat atagaataca atatatgtat
gtataaaaaa ttcataaaac accaataagc 600atataattgc aattttgcaa
aaccaaatta agaatataac tcaaatatta ctagaaacaa 660aaaaaattat
aaatcattgt cttcataaat taattctaag tatctacaaa tagaaataat
720atgaatttta tataaaaaag taatataaat tttattcctt tcttaaattt
atgaaaaata 780atacttctat atttctatac atgtttctat acatgcgttt
caatgtctga tagtgatagg 840aaactctact gtattttcaa aagttttttt
ttgtttaaat atattttttg tcatgtaatt 900gtgtgtgttt tcatttacgt
ccatgtaaaa agaaaatatt ttagttctat taaaatattt 960tttttatttt
ttatccttaa aatactttaa ataatatttt ttcctattta aagcattttt
1020tataatttaa agcgctattt aaaacgtttt tagaataaaa acataaaaca
aacacatttt 1080aaaatgattg aaatgaaaaa taaaactaat gaaaacgaaa
acaatactaa attacaggaa 1140agaaaaatat attcaaactt ttatgtttaa
aggtttttga atatttctct gattcgtttg 1200aaatatgtga agaaaattaa
aatatcaagt agtaggttac aacagttcgg gtgcaacagt 1260gactatgaca
gcaagataat agggccaata tatttggata cctctcttaa gacgtaaaca
1320ttttgagcga gaaaataatg gaaaaaaaat aagtcattca aatgataata
gatatataaa 1380ttatttttta ttttaaatat cttattaata tttttatttt
tttatcatat tataaattat 1440attatattta tgtagctttg ctcattgtct
tctacgggaa ctttcccgga cataggaacc 1500gccctttcgt tatcctcatc
catcgtgaaa tcaggaaata aatgttcgaa gatttgaggt 1560caaaagtcga
atttcatgtt gtctcttcta tttagataca aaattgaagc aattttcacc
1620aatttaatgc caaaatttaa aacaacgctg tcctgatttc acgatggatg
aggataacga 1680aagggcggtt cctatgtccg ggaaagttcc cgtagaagac
aatgagcaaa gctactgaaa 1740cgcggacacg acgtcgcatt ggtacggata
tgagttaaac cgactcaatt cctttattaa 1800gacataaacc gattttggtt
aaagtgtaac agtgagctga tataaaaccg aaacaaaccg 1860gtacaagttt
gattgagcaa cttgatgaca aacttcagaa ttttggttat tgaatgaaaa
1920tcatagtcta atcgtaaaaa atgtacagaa gaaaagctag agcagaacaa
agattctata 1980ttctggttcc aatttatcat cgctttaacg tccctcagat
ttgatcgggc tgcaggaatt 2040aaacgcccgg gcacgtggga tcctctagag
tcgactctag cagatctggc cggcccaccg 2100gtgggccata tgggcccgcg
gccgcgaatt cgagctcggt acctacctgg cgaaaggggg 2160atgtgctgca
aggcgattaa gttgggtaac gccagggttt tcccagtcac gacgttgtaa
2220aacgacggcc agtgaattgc ggccgcaatt cccgatctag taacatagat
gacaccgcgc 2280gcgataattt atcctagttt gcgcgctata ttttgttttc
tatcgcgtat taaatgtata 2340attgcgggac tctaatcata aaaacccatc
tcataaataa cgtcatgcat tacatgttaa 2400ttattacatg cttaacgtaa
ttcaacagaa attatatgat aatcatcgca agaccggcaa 2460caggattcaa
tcttaagaaa ctttattgcc aaatgtttga acgatcgggg aaattcgtcg
2520agtcaccctc ggccgggctt tttgacgctt aatcggcggt caatacacca
cgacgcacct 2580ggtcacgttc gatggactcg aacagcgcct tgaagttcca
ctcgccaaac ccatcgtcgc 2640ccttgcgctg gatgaattcg aagaacaccg
ggcccatcag ggtttccgag aagatctgca 2700gcagcaggcg tttgtcgcct
tccacggaag atccgtccag caggataccg cgtgcctgca 2760gttgatccac
cggctcgccg tggtcaggca ggcggccttc gagcatttcg taataagtgt
2820ctggcggcgc ggtcatgaag cgcatgccga ttttcttcaa cgcgtcccag
gtcttgacca 2880ggtcgtcggt gaggaacgcc acgtgctgga tgccttcgcc
gttgaactgc atcaggaact 2940cttcgatctg ccccgcgccc ttggacgact
cttcgttcag cgggatgcgg atcatgccgt 3000ccggcgcact catggccttg
gaagtcaggc cggtgtactc gcccttgata tcgaagtaac 3060gcgcttcacg
gaagttgaac aatttctcgt agaagttggc ccagtagacc atgcggccgc
3120gatagacgtt gtgggtcagg tggtcgatga ctttgagacc tgcaccgacc
ggattgcgct 3180ccacaccttc gaggtacacg aagtcgatgt cgtagatcga
gctgccttcg ccgaaacggt 3240cgatcaggta caacggcgcg ccgccgatgc
ccttgatcgc cggcaggttc aattccatcg 3300gcccggtgtc aatatggatc
ggctgggcgc cgagttccag ggcgcggttg taggcctttt 3360gcgagtcctt
cacgcggaac gccatgccgc acaccgacgg gccgtgttcg gccgcaaagt
3420aggaggcgat gctgttgggc tcgttgttga ggatcaggtt gatctcgccc
tggcggtaca 3480ggtgcacgtt cttggaacgg tgggtcgcga ctttggtgaa
gcccatgatc tcgaagatcg 3540gctccagggt acccggcgtc ggcgacgcga
attcgatgaa ttcaaagccc atcaggccca 3600ttgggttttc gtatagatct
gccatgcacc ggatccttcc gccgttgctg acgttgccga 3660ggcttctgga
ggagcggcgg gcgacgggga ggctggcggt ggacttgagc ccctggaacg
3720gagcgacggc ggtggccgac gaggccatca tcacggtggg cgccatagac
agcggcggca 3780ggtacgacag cgtctcgaac ttcttgttgc cgtaggccgg
ccacacctgc atatattgaa 3840ctcttccacc gttgctggga agggtggaga
agtcgttagc cttcttggtg gtggggaagg 3900cggcgttgga cttaaggccg
gtgaacggag ccaccatgtt ggcctgagca ggggcggtcc 3960ggctaacggt
cgcgactgag gaggagatcg aagccatggc tatcgttcgt aaatggtgaa
4020aattttcaga aaattgcttt tgctttaaaa gaaatgattt aaattgctgc
aatagaagta 4080gaatgcttga ttgcttgaga ttcgtttgtt ttgtatatgt
tgtgttgaga attctagagt 4140cgagagaaat tgatgtctgt agaagaagaa
gaacggttaa gagtagattt gggtgagaaa 4200gatgtgaaat tgtttttata
ggcaaagacg gagagtctat tttttgagca atcagatcgc 4260atattaaatc
taacggctga gatatcgatc cgtgtgtaca ataaaatgat gtataaaccg
4320tcgatctgtt ttaatcgacg gttcatatta gtgatccgcg tgatggcagt
gatagccact 4380aagaatcgtc ttttgtttta catgtggcgc cacaaattag
ggtaatgaag cggcaatatt 4440ttggaactcg gaaaataaaa ttgcgccatc
acattatttg aaaattttca catgctttta 4500ttttaaaaac ccacgaatta
caagttacaa ccgaaaaaga tttataatat agtgatttat 4560actaattttg
tagtagctta atgtatattg atactggaaa aacaatgaca atcataatcg
4620atccgtgtgt acaataaaat gatgtataaa ccgtcgatct gttttaatcg
acggttcata 4680ttagtgatcc gcgtgatggc agtgatagcc actaagaatc
gtcttttgtt ttacatgtgg 4740cgccacaaat tagggtaatg aagcggcaat
attttggaac tcggaaaata aaattgcgcc 4800atcacattat ttgaaaattt
tcacatgctt ttattttaaa aacccacgaa ttacaagtta 4860caaccgaaaa
agatttataa tatagtgatt tatactaatt ttgtagtagc ttaatgtata
4920ttgatactgg aaaaacaatg acaatcatat gttagtatta tcaagttatc
gtattgatat 4980tgatattgga acatacaatg ggtattgcct tctttcgacc
ataaatatca ccaaatttac 5040aaagtttgtg tataccaagt tatcaattgt
aaatgggatg tcaacatttt aatttccctt 5100tgagaaacta tagaccacaa
gaacacactt caatagataa agtaactatt tacataagag 5160gttttaaaat
cacattaaca aaaataatta ccaaccggca ctcacaaata caaacagagc
5220acacgacatg tcaaagccac aagtaaattc gttgagtggt ggtttcatta
caattgtgtc 5280acttgcagca caaactatct tgctctggga atcatctcag
catcaaagat catgctcact 5340tcaggggaac ttagtgtatc catgcctcga
ctcatatttc tcctcgacct gcaggcatgc 5400aagctctaga gcggccgcca
ccgcggtgga ggtactcgag tcgcgacgta cgttcgaaca 5460attggtttta
aaagcttgca tgcctgcagg tcgaggagaa atatgagtcg aggcatggat
5520acactaagtt cccctgaagt gagcatgatc tttgatgctg agatgattcc
cagagcaaga 5580tagtttgtgc tgcaagtgac acaattgtaa tgaaaccacc
actcaacgaa tttacttgtg 5640gctttgacat gtcgtgtgct ctgtttgtat
ttgtgagtgc cggttggtaa ttatttttgt 5700taatgtgatt ttaaaacctc
ttatgtaaat agttacttta tctattgaag tgtgttcttg 5760tggtctatag
tttctcaaag ggaaattaaa atgttgacat cccatttaca attgataact
5820tggtatacac aaactttgta aatttggtga tatttatggt cgaaagaagg
caatacccat 5880tgtatgttcc aatatcaata tcaatacgat aacttgataa
tactaacata tgattgtcat 5940tgtttttcca gtatcaatat acattaagct
actacaaaat tagtataaat cactatatta 6000taaatctttt tcggttgtaa
cttgtaattc gtgggttttt aaaataaaag catgtgaaaa 6060ttttcaaata
atgtgatggc gcaattttat tttccgagtt ccaaaatatt gccgcttcat
6120taccctaatt tgtggcgcca catgtaaaac aaaagacgat tcttagtggc
tatcactgcc 6180atcacgcgga tcactaatat gaaccgtcga ttaaaacaga
tcgacggttt atacatcatt 6240ttattgtaca cacggatcga tatctcagcc
gttagattta atatgcgatc tgattgctca 6300aaaaatagac tctccgtctt
tgcctataaa aacaatttca catctttctc acccaaatct 6360actcttaacc
gttcttcttc ttctacagac atcaatttct ctcgactcta gaggatccaa
6420gcttatcgat ttcgaacccc tcaggcgaag aacaggtatg atttgtttgt
aattagatca 6480ggggtttagg tctttccatt actttttaat gttttttctg
ttactgtctc cgcgatctga 6540ttttacgaca atagagtttc gggttttgtc
ccattccagt ttgaaaataa aggtccgtct 6600tttaagtttg ctggatcgat
aaacctgtga agattgagtc tagtcgattt attggatgat 6660ccattcttca
tcgttttttt cttgcttcga agttctgtat aaccagattt gtctgtgtgc
6720gattgtcatt acctagccgt gtatcgagaa ctagggtttt cgagtcaatt
ttgccccttt 6780tggttatatc tggttcgata acgattcatc tggattaggg
ttttaagtgg tgacgtttag 6840tattccaatt tcttcaaaat ttagttatgg
ataatgaaaa tccccaattg actgttcaat 6900ttcttgttaa atgcgcagat
ccccatggct tcgatctcct cctcagtcgc gaccgttagc 6960cggaccgccc
ctgctcaggc caacatggtg gctccgttca ccggccttaa gtccaacgcc
7020gccttcccca ccaccaagaa ggctaacgac ttctccaccc ttcccagcaa
cggtggaaga 7080gttcaatgta tgcaggtgtg gccggcctac ggcaacaaga
agttcgagac gctgtcgtac 7140ctgccgccgc tgtctatggc gcccaccgtg
atgatggcct cgtcggccac cgccgtcgct 7200ccgttccagg ggctcaagtc
caccgccagc ctccccgtcg cccgccgctc ctccagaagc 7260ctcggcaacg
tcagcaacgg cggaaggatc cggtgcatgg ccggcgccga ggagatcgtg
7320ctgcagccca tcaaggagat ctccggcacc gtcaagctgc cggggtccaa
gtcgctttcc 7380aaccggatcc tcctactcgc cgccctgtcc gaggggacaa
cagtggttga taacctgctg 7440aacagtgagg atgtccacta catgctcggg
gccttgagga ctcttggtct ctctgtcgaa 7500gcggacaaag ctgccaaaag
agctgtagtt gttggctgtg gtggaaagtt cccagttgag 7560gatgctaaag
aggaagtgca gctcttcttg gggaatgctg gaatcgcaat gcggtccttg
7620acagcagctg ttactgctgc tggtggaaat gcaacttacg tgcttgatgg
agtaccaaga 7680atgagggaga gacccattgg cgacttggtt gtcggattga
agcagcttgg tgcagatgtt 7740gattgtttcc ttggcactga ctgcccacct
gttcgtgtca atggaatcgg agggctacct 7800ggtggcaagg tcaagctgtc
tggctccatc agcagtcagt acttgagtgc cttgctgatg 7860gctgctcctt
tggctcttgg ggatgtggag attgaaatca ttgataaatt aatctccatt
7920ccgtacgtcg aaatgacatt gagattgatg gagcgttttg gtgtgaaagc
agagcattct 7980gatagctggg acagattcta cattaaggga ggtcaaaaat
acaagtcccc taaaaatgcc 8040tatgttgaag gtgatgcctc aagcgcaagc
tatttcttgg ctggtgctgc aattactgga 8100gggactgtga ctgtggaagg
ttgtggcacc accagtttgc agggtgatgt gaagtttgct 8160gaggtactgg
agatgatggg agcgaaggtt acatggaccg agactagcgt aactgttact
8220ggcccaccgc gggagccatt tgggaggaaa cacctcaagg cgattgatgt
caacatgaac 8280aagatgcctg atgtcgccat gactcttgct gtggttgccc
tctttgccga tggcccgaca 8340gccatcagag acgtggcttc ctggagagta
aaggagaccg agaggatggt tgcgatccgg 8400acggagctaa ccaagctggg
agcatctgtt gaggaagggc cggactactg catcatcacg 8460ccgccggaga
agctgaacgt gacggcgatc gacacgtacg acgaccacag gatggcgatg
8520gctttctccc ttgccgcctg tgccgaggtc cccgtcacca tccgggaccc
tgggtgcacc 8580cggaagacct tccccgacta cttcgatgtg ctgagcactt
tcgtcaagaa ttaagctcta 8640gaactagtgg atcccccgat ccgcgtttgt
gttttctggg
tttctcactt aagcgtctgc 8700gttttacttt tgtattgggt ttggcgttta
gtagtttgcg gtagcgttct tgttatgtgt 8760aattacgctt tttcttcttg
cttcagcagt ttcggttgaa atataaatcg aatcaagttt 8820cactttatca
gcgttgtttt aaattttggc attaaattgg tgaaaattgc ttcaattttg
8880tatctaaata gaagagacaa catgaaattc gacttttgac ctcaaatctt
cgaacattta 8940tttcctgatt tcacgatgga tgaggataac gaaagggcgg
ttcctatgtc cgggaaagtt 9000cccgtagaag acaatgagca aagctactga
aacgcggaca cgacgtcgca ttggtacgga 9060tatgagttaa accgactcaa
ttcctttatt aagacataaa ccgattttgg ttaaagtgta 9120acagtgagct
gatataaaac cgaaacaaac cggtacaagt ttgattgagc aacttgatga
9180caaacttcag aattttggtt attgaatgaa aatcatagtc taatcgtaaa
aaatgtacag 9240aagaaaagct agagcagaac aaagattcta tattctggtt
ccaatttatc atcgctttaa 9300cgtccctcag atttgatcgg gctgcaggaa
ttaaacgccc gggcacgtgg gatcctctag 9360cagatctggc cggcccaccg
gtgggccata tgggcccgcg gccgcgaatt cgagctcggt 9420acctacctgg
cgaaaggggg atgtgctgca aggcgattaa gttgggtaac gccagggttt
9480tcccagtcac gacgttgtaa aacgacggcc agtgaattgc ggccgcaatt
cccgatctag 9540taacatagat gacaccgcgc gcgataattt atcctagttt
gcgcgctata ttttgttttc 9600tatcgcgtat taaatgtata attgcgggac
tctaatcata aaaacccatc tcataaataa 9660cgtcatgcat tacatgttaa
ttattacatg cttaacgtaa ttcaacagaa attatatgat 9720aatcatcgca
agaccggcaa caggattcaa tcttaagaaa ctttattgcc aaatgtttga
9780acgatcgggg aaattcgtcg agtcaccctc ggccgggctt tttgacgctt
aatcggcggt 9840caatacacca cgacgcacct ggtcacgttc gatggactcg
aacagcgcct tgaagttcca 9900ctcgccaaac ccatcgtcgc ccttgcgctg
gatgaattcg aagaacaccg ggcccatcag 9960ggtttccgag aagatctgca
gcagcaggcg tttgtcgcct tccacggaag atccgtccag 10020caggataccg
cgtgcctgca gttgatccac cggctcgccg tggtcaggca ggcggccttc
10080gagcatttcg taataagtgt ctggcggcgc ggtcatgaag cgcatgccga
ttttcttcaa 10140cgcgtcccag gtcttgacca ggtcgtcggt gaggaacgcc
acgtgctgga tgccttcgcc 10200gttgaactgc atcaggaact cttcgatctg
ccccgcgccc ttggacgact cttcgttcag 10260cgggatgcgg atcatgccgt
ccggcgcact catggccttg gaagtcaggc cggtgtactc 10320gcccttgata
tcgaagtaac gcgcttcacg gaagttgaac aatttctcgt agaagttggc
10380ccagtagacc atgcggccgc gatagacgtt gtgggtcagg tggtcgatga
ctttgagacc 10440tgcaccgacc ggattgcgct ccacaccttc gaggtacacg
aagtcgatgt cgtagatcga 10500gctgccttcg ccgaaacggt cgatcaggta
caacggcgcg ccgccgatgc ccttgatcgc 10560cggcaggttc aattccatcg
gcccggtgtc aatatggatc ggctgggcgc cgagttccag 10620ggcgcggttg
taggcctttt gcgagtcctt cacgcggaac gccatgccgc acaccgacgg
10680gccgtgttcg gccgcaaagt aggaggcgat gctgttgggc tcgttgttga
ggatcaggtt 10740gatctcgccc tggcggtaca ggtgcacgtt cttggaacgg
tgggtcgcga ctttggtgaa 10800gcccatgatc tcgaagatcg gctccagggt
acccggcgtc ggcgacgcga attcgatgaa 10860ttcaaagccc atcaggccca
ttgggttttc gtatagatct gccatgcacc ggatccttcc 10920gccgttgctg
acgttgccga ggcttctgga ggagcggcgg gcgacgggga ggctggcggt
10980ggacttgagc ccctggaacg gagcgacggc ggtggccgac gaggccatca
tcacggtggg 11040cgccatagac agcggcggca ggtacgacag cgtctcgaac
ttcttgttgc cgtaggccgg 11100ccacacctgc atatattgaa ctcttccacc
gttgctggga agggtggaga agtcgttagc 11160cttcttggtg gtggggaagg
cggcgttgga cttaaggccg gtgaacggag ccaccatgtt 11220ggcctgagca
ggggcggtcc ggctaacggt cgcgactgag gaggagatcg aagccatggc
11280tatcgttcgt aaatggtgaa aattttcaga aaattgcttt tgctttaaaa
gaaatgattt 11340aaattgctgc aatagaagta gaatgcttga ttgcttgaga
ttcgtttgtt ttgtatatgt 11400tgtgttgaga attctagagt cgagagaaat
tgatgtctgt agaagaagaa gaacggttaa 11460gagtagattt gggtgagaaa
gatgtgaaat tgtttttata ggcaaagacg gagagtctat 11520tttttgagca
atcagatcgc atattaaatc taacggctga gatatcgatc cgtgtgtaca
11580ataaaatgat gtataaaccg tcgatctgtt ttaatcgacg gttcatatta
gtgatccgcg 11640tgatggcagt gatagccact aagaatcgtc ttttgtttta
catgtggcgc cacaaattag 11700ggtaatgaag cggcaatatt ttggaactcg
gaaaataaaa ttgcgccatc acattatttg 11760aaaattttca catgctttta
ttttaaaaac ccacgaatta caagttacaa ccgaaaaaga 11820tttataatat
agtgatttat actaattttg tagtagctta atgtatattg atactggaaa
11880aacaatgaca atcataatcg atccgtgtgt acaataaaat gatgtataaa
ccgtcgatct 11940gttttaatcg acggttcata ttagtgatcc gcgtgatggc
agtgatagcc actaagaatc 12000gtcttttgtt ttacatgtgg cgccacaaat
tagggtaatg aagcggcaat attttggaac 12060tcggaaaata aaattgcgcc
atcacattat ttgaaaattt tcacatgctt ttattttaaa 12120aacccacgaa
ttacaagtta caaccgaaaa agatttataa tatagtgatt tatactaatt
12180ttgtagtagc ttaatgtata ttgatactgg aaaaacaatg acaatcatat
gttagtatta 12240tcaagttatc gtattgatat tgatattgga acatacaatg
ggtattgcct tctttcgacc 12300ataaatatca ccaaatttac aaagtttgtg
tataccaagt tatcaattgt aaatgggatg 12360tcaacatttt aatttccctt
tgagaaacta tagaccacaa gaacacactt caatagataa 12420agtaactatt
tacataagag gttttaaaat cacattaaca aaaataatta ccaaccggca
12480ctcacaaata caaacagagc acacgacatg tcaaagccac aagtaaattc
gttgagtggt 12540ggtttcatta caattgtgtc acttgcagca caaactatct
tgctctggga atcatctcag 12600catcaaagat catgctcact tcaggggaac
ttagtgtatc catgcctcga ctcatatttc 12660tcctcgacct gcaggcatgc
aagctctaga gcggccgcca ccgcggtgga ggtactcgag 12720tcgcgacgta
cgttcgaaca attggtttta aaagcttgca tgcctgcagg tcgaggagaa
12780atatgagtcg aggcatggat acactaagtt cccctgaagt gagcatgatc
tttgatgctg 12840agatgattcc cagagcaaga tagtttgtgc tgcaagtgac
acaattgtaa tgaaaccacc 12900actcaacgaa tttacttgtg gctttgacat
gtcgtgtgct ctgtttgtat ttgtgagtgc 12960cggttggtaa ttatttttgt
taatgtgatt ttaaaacctc ttatgtaaat agttacttta 13020tctattgaag
tgtgttcttg tggtctatag tttctcaaag ggaaattaaa atgttgacat
13080cccatttaca attgataact tggtatacac aaactttgta aatttggtga
tatttatggt 13140cgaaagaagg caatacccat tgtatgttcc aatatcaata
tcaatacgat aacttgataa 13200tactaacata tgattgtcat tgtttttcca
gtatcaatat acattaagct actacaaaat 13260tagtataaat cactatatta
taaatctttt tcggttgtaa cttgtaattc gtgggttttt 13320aaaataaaag
catgtgaaaa ttttcaaata atgtgatggc gcaattttat tttccgagtt
13380ccaaaatatt gccgcttcat taccctaatt tgtggcgcca catgtaaaac
aaaagacgat 13440tcttagtggc tatcactgcc atcacgcgga tcactaatat
gaaccgtcga ttaaaacaga 13500tcgacggttt atacatcatt ttattgtaca
cacggatcga tatctcagcc gttagattta 13560atatgcgatc tgattgctca
aaaaatagac tctccgtctt tgcctataaa aacaatttca 13620catctttctc
acccaaatct actcttaacc gttcttcttc ttctacagac atcaatttct
13680ctcgactcta gaggatccaa gcttatcgat ttcgaacccc tcaggcgaag
aacaggtatg 13740atttgtttgt aattagatca ggggtttagg tctttccatt
actttttaat gttttttctg 13800ttactgtctc cgcgatctga ttttacgaca
atagagtttc gggttttgtc ccattccagt 13860ttgaaaataa aggtccgtct
tttaagtttg ctggatcgat aaacctgtga agattgagtc 13920tagtcgattt
attggatgat ccattcttca tcgttttttt cttgcttcga agttctgtat
13980aaccagattt gtctgtgtgc gattgtcatt acctagccgt gtatcgagaa
ctagggtttt 14040cgagtcaatt ttgccccttt tggttatatc tggttcgata
acgattcatc tggattaggg 14100ttttaagtgg tgacgtttag tattccaatt
tcttcaaaat ttagttatgg ataatgaaaa 14160tccccaattg actgttcaat
ttcttgttaa atgcgcagat ccccatggct tcgatctcct 14220cctcagtcgc
gaccgttagc cggaccgccc ctgctcaggc caacatggtg gctccgttca
14280ccggccttaa gtccaacgcc gccttcccca ccaccaagaa ggctaacgac
ttctccaccc 14340ttcccagcaa cggtggaaga gttcaatgta tgcaggtgtg
gccggcctac ggcaacaaga 14400agttcgagac gctgtcgtac ctgccgccgc
tgtctatggc gcccaccgtg atgatggcct 14460cgtcggccac cgccgtcgct
ccgttccagg ggctcaagtc caccgccagc ctccccgtcg 14520cccgccgctc
ctccagaagc ctcggcaacg tcagcaacgg cggaaggatc cggtgcatgg
14580ccggcgccga ggagatcgtg ctgcagccca tcaaggagat ctccggcacc
gtcaagctgc 14640cggggtccaa gtcgctttcc aaccggatcc tcctactcgc
cgccctgtcc gaggggacaa 14700cagtggttga taacctgctg aacagtgagg
atgtccacta catgctcggg gccttgagga 14760ctcttggtct ctctgtcgaa
gcggacaaag ctgccaaaag agctgtagtt gttggctgtg 14820gtggaaagtt
cccagttgag gatgctaaag aggaagtgca gctcttcttg gggaatgctg
14880gaatcgcaat gcggtccttg acagcagctg ttactgctgc tggtggaaat
gcaacttacg 14940tgcttgatgg agtaccaaga atgagggaga gacccattgg
cgacttggtt gtcggattga 15000agcagcttgg tgcagatgtt gattgtttcc
ttggcactga ctgcccacct gttcgtgtca 15060atggaatcgg agggctacct
ggtggcaagg tcaagctgtc tggctccatc agcagtcagt 15120acttgagtgc
cttgctgatg gctgctcctt tggctcttgg ggatgtggag attgaaatca
15180ttgataaatt aatctccatt ccgtacgtcg aaatgacatt gagattgatg
gagcgttttg 15240gtgtgaaagc agagcattct gatagctggg acagattcta
cattaaggga ggtcaaaaat 15300acaagtcccc taaaaatgcc tatgttgaag
gtgatgcctc aagcgcaagc tatttcttgg 15360ctggtgctgc aattactgga
gggactgtga ctgtggaagg ttgtggcacc accagtttgc 15420agggtgatgt
gaagtttgct gaggtactgg agatgatggg agcgaaggtt acatggaccg
15480agactagcgt aactgttact ggcccaccgc gggagccatt tgggaggaaa
cacctcaagg 15540cgattgatgt caacatgaac aagatgcctg atgtcgccat
gactcttgct gtggttgccc 15600tctttgccga tggcccgaca gccatcagag
acgtggcttc ctggagagta aaggagaccg 15660agaggatggt tgcgatccgg
acggagctaa ccaagctggg agcatctgtt gaggaagggc 15720cggactactg
catcatcacg ccgccggaga agctgaacgt gacggcgatc gacacgtacg
15780acgaccacag gatggcgatg gctttctccc ttgccgcctg tgccgaggtc
cccgtcacca 15840tccgggaccc tgggtgcacc cggaagacct tccccgacta
cttcgatgtg ctgagcactt 15900tcgtcaagaa ttaagctcta gaactagtgg
atcccccgat ccgcgtttgt gttttctggg 15960tttctcactt aagcgtctgc
gttttacttt tgtattgggt ttggcgttta gtagtttgcg 16020gtagcgttct
tgttatgtgt aattacgctt tttcttcttg cttcagcagt ttcggttgaa
16080atataaatcg aatcaagttt cactttatca gcgttgtttt aaattttggc
attaaattgg 16140tgaaaattgc ttcaattttg tatctaaata gaagagacaa
catgaaattc gacttttgac 16200ctcaaatctt cgaacattta tttcctgatt
tcacgatgga tgaggataac gaaagggcgg 16260ttcctatgtc cgggaaagtt
cccgtagaag acaatgagca aagctactga aacgcggaca 16320cgacgtcgca
ttggtacgga tatgagttaa accgactcaa ttcctttatt aagacataaa
16380ccgattttgg ttaaagtgta acagtgagct gatataaaac cgaaacaaac
cggtacaagt 16440ttgattgagc aacttgatga caaacttcag aattttggtt
attgaatgaa aatcatagtc 16500taatcgtaaa aaatgtacag aagaaaagct
agagcagaac aaagattcta tattctggtt 16560ccaatttatc atcgctttaa
cgtccctcag atttgatcgg gctgcaggaa ttaatgtggt 16620tcatccgtct
ttttgttaat gcggtcatca atacgtgcct caaagattgc caaatagatt
16680aatgtggttc atctccctat atgttttgct tgttggattt tgctatcaca
tgtttattgc 16740tccaaactaa ttataataaa atgactttca aatgattggt
gttgacattc ttttcaaatt 16800gttcgctgaa gaaaagataa tctcgaggcc
ttgatttgtt aatgctttca ttaataaata 16860aataaaataa ctctttccaa
atttcaattc atgcttttat attgtgtggt tcatcctcat 16920cttatgtcac
tattatcatt tcatgtttga gactttactt ggccatattt gagaagacct
16980tcttcattat aggcaatttt atctccacaa taatataaga gaatatcttg
aattaataat 17040tattgaggat atattatagg gttctatgtg gaactaaaga
catggttacc ccattaagag 17100agagtataga ggaattactt ttatttgcca
cgaggcgacg cgacttgtat ttattttgga 17160attgtacttt tgcgtgagca
gtgtggctct atgttggggc ctccacttgt tggtgtttta 17220tatatgtgaa
aggaggatga gggtgatggt tcatttcttt gcattatttt tgttattcgc
17280gcgaatgata tatgccctgt ttttgaagat tgatagggaa gtccatatat
aggaattgaa 17340gtgtcaaaag ggtgtgagta tgtgctatga taatcaccca
attaatgtac atctggtgtg 17400gtgtttgaat ttgtaggtca ttaattaata
ttcctcttgg tgaagtttgg agttcttttg 17460caattacaat tctgttttgt
aagtgattat gatggacttt tagatgtttc tcaaacagta 17520ggtgtaaaga
aaaatgggcc ctggtatgaa aatttgtttt cactctttct cattcatatc
17580tttaaaaaaa gaatgataat tttgtaataa aaataaaaaa atattaaata
ttttctcaaa 17640tcaaacaacc tttatttttt atgccaacaa taattttgtt
aaagatggag atttcaatta 17700ttatataaga gttcattata gttgaaaatt
gaatgaatgt atatgtttac gttttttgtc 17760tcaagtgaaa ctaagatcaa
atattcatat ctattgagct ggtctt 178062123DNAArtificial Sequenceprimer
SHA130 21ctatattctg gttccaattt atc 232220DNAArtificial
Sequenceprimer SMP178 22tgaggcacgt attgatgacc 20
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References