U.S. patent application number 13/379676 was filed with the patent office on 2012-04-19 for immunogenic composition comprising peptides derived from cytomegalovirus and the use thereof.
This patent application is currently assigned to VECTORITE BIOMEDICA INC.. Invention is credited to Yu-Ju Huang, Yin Lian, Fu-Hung Yang.
Application Number | 20120093848 13/379676 |
Document ID | / |
Family ID | 43385855 |
Filed Date | 2012-04-19 |
United States Patent
Application |
20120093848 |
Kind Code |
A1 |
Lian; Yin ; et al. |
April 19, 2012 |
IMMUNOGENIC COMPOSITION COMPRISING PEPTIDES DERIVED FROM
CYTOMEGALOVIRUS AND THE USE THEREOF
Abstract
The present invention provides (poly)peptides, which are
recognized by human cytomegalovirus (CMV)-specific immune cells.
The present invention further provides a combination of multiple
CMV (poly)peptides, comprising at least two different groups of
(poly)peptides according to the invention as well as conjugates,
comprising said (poly)peptides and/or immune adjuvants thereof.
Furthermore, this invention provides mixtures, comprising said
(poly)peptides and/or immune cells thereof, which are used to
generate CMV-specific immune effector cells with high sensitivity
and specificity. In addition, the present invention provides a
preparation method of CMV-specific immune effector cells, by using
said (poly)peptides, adjuvants, immune cells and/or mixtures
thereof to generate anti-CMV immune response.
Inventors: |
Lian; Yin; (Taipei, TW)
; Huang; Yu-Ju; (Taipei, TW) ; Yang; Fu-Hung;
(Taipei, TW) |
Assignee: |
VECTORITE BIOMEDICA INC.
Taipei
TW
|
Family ID: |
43385855 |
Appl. No.: |
13/379676 |
Filed: |
June 26, 2009 |
PCT Filed: |
June 26, 2009 |
PCT NO: |
PCT/CN09/00718 |
371 Date: |
December 21, 2011 |
Current U.S.
Class: |
424/186.1 ;
435/373; 435/375 |
Current CPC
Class: |
A61P 31/22 20180101;
C12N 2710/16134 20130101; A61K 39/12 20130101; A61P 37/04 20180101;
C12N 2710/16122 20130101; A61K 2039/5158 20130101; A61K 2039/5154
20130101; A61K 39/245 20130101 |
Class at
Publication: |
424/186.1 ;
435/375; 435/373 |
International
Class: |
A61K 39/245 20060101
A61K039/245; C12N 5/0783 20100101 C12N005/0783; C12N 5/0789
20100101 C12N005/0789; A61P 37/04 20060101 A61P037/04; A61P 31/22
20060101 A61P031/22; C12N 5/078 20100101 C12N005/078; C12N 5/0781
20100101 C12N005/0781 |
Claims
1. An immunogenic composition, comprising: (a) at least one peptide
pool selected from CMV pp65 and CMV IE-1 polypeptides-derived
peptide pools; and (b) one or more peptide pool(s) selected from
the group consisting of CMV VGLB, CMV VPAP and CMVp100
polypeptides-derived peptide pools.
2. The immunogenic composition according to claim 1, wherein the
CMV pp65 has a sequence essentially identical to the sequence as
set forth in SEQ ID NO: 1; the CMV IE-1 has a sequence essentially
identical to the sequence as set forth in SEQ ID NO: 2; the CMV
VGLB has a sequence essentially identical to the sequence as set
forth in SEQ ID NO: 3; the CMV VPAP has a sequence essentially
identical to the sequence as set forth in SEQ ID NO: 4; and the CMV
p100 has a sequence essentially identical to the sequence as set
forth in SEQ ID NO: 5.
3. The immunogenic composition according to claim 1, wherein the
peptide pools comprise CMV pp65, CMV IE-1, CMV VGLB, CMV VPAP and
CMVp100 polypeptide-derived peptide pools.
4. The immunogenic composition according to claim 1, wherein each
polypeptide-derived peptide pool contains peptides having a length
of 12 to 18 amino acids.
5. The immunogenic composition according to claim 1, wherein each
polypeptide-derived peptide pool of the immunogenic composition
includes pentadecapeptides.
6. The immunogenic composition according to claim 5, wherein the
two adjacent pentadecapeptides in each polypeptide-derived peptide
pool has 11 continuous amino acid residues overlapping in
sequence.
7. The immunogenic composition according to claim 1, wherein two
adjacent peptides of each peptide pool of the immunogenic
composition has 10 to 15 continuous amino acid residues overlapping
in sequence.
8. A method for activating immune cells, comprising steps of:
mixing an immune cell and an immunogenic composition as claims 1 to
a mixed culture; then incubating the mixed cell culture in a
suitable medium to obtain the activated immune cell; wherein the
immunogenic composition containing CMV-derived peptide, comprises :
(a) one or more peptide pool(s) selected from CMV pp65 and CMV IE-1
polypeptides-derived peptide pools; and (b) one or more peptide
pool(s) selected from the group consisting of CMV VGLB, CMV VPAP
and CMVp100 polypeptides-derived peptide pools.
9. The immunogenic composition according to claim 8, wherein the
CMV pp65 has a sequence essentially identical to the sequence as
set forth in SEQ ID NO: 1; the CMV IE-1 has a sequence essentially
identical to the sequence as set forth in SEQ ID NO: 2; the CMV
VGLB has a sequence essentially identical to the sequence as set
forth in SEQ ID NO: 3; the CMV VPAP has a sequence essentially
identical to the sequence as set forth in SEQ ID NO: 4; and the CMV
p100 has a sequence essentially identical to the sequence as set
forth in SEQ ID NO: 5.
10. The immunogenic composition according to claim 8, wherein the
peptide pools comprise CMV pp65, CMV IE-1, CMV VGLB, CMV VPAP and
CMVp100 polypeptide-derived peptide pools.
11. The immunogenic composition according to claim 8, wherein each
polypeptide-derived peptide pool contains peptides having a length
of 12 to 18 amino acids.
12. The immunogenic composition according to claim 8, wherein each
polypeptide-derived peptide pool of the immunogenic composition
includes pentadecapeptides.
13. The immunogenic composition according to claim 12, wherein the
two adjacent pentadecapeptides in each polypeptide-derived peptide
pool has 11 continuous amino acid residues overlapping in
sequence.
14. The immunogenic composition according to claim 8, wherein two
adjacent peptides of each peptide pool of the immunogenic
composition has 10 to 15 continuous amino acid residues overlapping
in sequence.
15. The method according to claim 8, wherein the immunogenic
composition further includes an immunostimulant.
16. The method according to claim 8, wherein the immune cells are
derived from peripheral blood mononuclear cells, bone marrow cells,
hematopoietic progenitor cells or dendritic cells of stem
cells.
17. The method according to claim 8, wherein the suitable medium
comprises cytokines or growth factors; the cytokines are selected
from the group consisting of IL-2, IL-7 and a combination
thereof.
18. A method for inducing production of immune effector cells,
comprising steps of: providing an activated immune cell as claims 8
and a lymphocyte; and co-incubating the activated immune cell and
the lymphocyte in a suitable medium to obtain an immune effector
cell.
19. The method according to claim 18, wherein the immunogenic
composition further includes an immunostimulant.
20. The method according to claim 18, wherein the immune cells are
derived from peripheral blood mononuclear cells, bone marrow cells,
hematopoietic progenitor cells or dendritic cells of stem
cells.
21. The method according to claim 18, wherein the suitable medium
comprises cytokines or growth factors; the cytokines are selected
from the group consisting of IL-2, IL-7 and a combination
thereof.
22. The method according to claim 18, wherein the lymphocyte is
derived from non-adherent peripheral blood mononuclear cells.
23. The method according to claim 18, wherein the lymphocyte is T
lymphocyte or B lymphocyte.
Description
BACKGROUND OF THE INVENTION
[0001] 1. Field of the Invention
[0002] The present invention relates to an anti-herpes virus
vaccine, particularly for producing the antigen composition of
anti-herpes virus of immune effector cells. The present invention
also relates to the use of the above antigen composition and the
method for activating immune cells.
[0003] 2. Description of the Prior Arts
[0004] Herpes virus belongs to Herpesviridae. As currently known,
eight kinds of viruses cause diseases; these viruses are called
human herpes viruses (HHV), including: (1) human herpes cirus-1
(HHV-1), also known as herpes simplex virus-1 (HSV-1); (2) human
herpes virus-2 (HHV-2), also known as herpes simplex virus-2
(HSV-2); (3) human herpes virus-3 (HHV-3), also known as Varicella
Zoster Virus (VZV), which causes chicken pox and herpes zoster and
is also called varicella virus; (4) human herpes virus-4 (HHV-4),
also known as Epstein-Barr Virus (EBV), which is a lymphocytic
virus, causes Burkitt's lymphoma and nasopharyngeal carcinoma; (5)
human herpes virus-5 (HHV-5), also known as cytomegalovirus (CMV);
(6) human herpes virus-6 (HHV-6), also known as roseolovirus, which
causes the sixth syndrone including roseola infantum and exanthema
subitum; (7) human herpes virus-7 (HHV-7), related to HHV-6 and
causing similar symptoms; and (8) human herpes virus-8 (HHV-8),
which is Genus Rhadinovirus, referred to as kSHV, and could be
found in Kaposi's sarcoma.
[0005] Current management of herpes virus infections in transplant
recipients includes prophylaxis or preemptive treatment with
antiviral agents Taking Cytomegalovirus (CMV) as an example, for
the former is positive in culture test or expresses virus active
replication in test, to heal beforehand without any symptoms. The
latter is aimed at serum positive for healing beforehand without
any symptoms. There are several antiviral drugs available against
CMV replication, including ganciclovir, foscarnet, and cidofovir.
(Gandhi M K, et al., Lancet Infect. Dis., 2004, 4:725-38)
Significant progress has been made in the control of CMV infection
in transplant recipients with these agents.
[0006] However, these pharmacological strategies have limitations,
e.g., drug toxicities, development of resistance, poor oral
bioavailability, and low potency. Mortality remains high even
though patients are treated with antiviral agents, especially when
therapy is not initiated early in the course. (Gandhi M K, et al.,
Lancet Infect. Dis., 2004, 4:725-38; Ison M G, et al., Clin. Chest
Med., 2005, 26:691-705; Gandhi M K, et al., Blood Rev., 2003,
17:259-64) In addition, resistance to antiviral agents emerges in
patients after prolonged exposure to this agent (Ison M G, et al.,
supra; Biron K K., Antiviral Res., 2006, 71: 154-63).
[0007] Existing immune-therapies for herpes virus infected diseases
use herpes virus antigen sources based on live viruses, herpes
virus-infected cells, herpes virus gene expression vectors, or
synthetic herpes virus proteins or peptides to prime
antigen-presenting cells for the activation of herpes
virus-specific immune response. The use of viruses or
virus-infected cells as antigen source has potential risk of virus
contamination and infection. The use of full-length herpes virus
genes or proteins as antigen source has potential risk of induction
of immune suppression or tolerance.
SUMMARY OF THE INVENTION
[0008] Given that the aforesaid drawbacks of the prior art such as
virus-infection and immune tolerance, the objective of the present
invention provides an immune therapy for herpes virus, which does
not produce problems as which are caused by using live viruses,
herpes virus-infected cells or full-length herpes virus
proteins.
[0009] Therefore, in one aspect, the present invention provides an
immunogenic composition containing peptides derived from CMV, which
comprises: (a) at least one peptide fragment selected from CMV
pp65-derived and CMV IE-1-derived peptide fragments; and (b) one or
more peptide fragment(s) selected from the group consisting of CMV
VGLB, CMV VPAP and CMVp100 polypeptide-derived peptide
fragments.
[0010] In a second aspect, the present invention provides an
immunogenic composition containing peptides derived from CMV, which
comprises: (a) at least one peptide pool selected from CMV pp65 and
CMV IE-1 polypeptides-derived peptide pools; and (b) one or more
peptide pool(s) selected from the group consisting of CMV VGLB, CMV
VPAP and CMVp100 polypeptide-derived peptide pool.
[0011] In a preferred embodiment of the immunogenic composition of
the present invention, CMV pp65 has a sequence essentially
identical to the sequence as set forth in SEQ ID NO: 1; CMV IE-1
has a sequence essentially identical to the sequence as set forth
in SEQ ID NO: 2; CMV VGLB has a sequence essentially identical to
the sequence as set forth in SEQ ID NO: 3; CMV VPAP has a sequence
essentially identical to the sequence as set forth in SEQ ID NO: 4;
and CMV p100 has a sequence essentially identical to the sequence
as set forth in SEQ ID NO: 5.
[0012] Preferably, said immunogenic composition comprises CMV pp65,
CMV IE-1, CMV VGLB, CMV VPAP and CMV p100 polypeptide-derived
peptide pools.
[0013] In a third aspect, the present invention provides use of the
immunogenic composition as in any of the aforesaid first to second
aspects for ex vivo inducing immune response for herpes virus.
[0014] In a fourth aspect, the present invention provides use of
the immunogenic composition as in any of the aforesaid first to
second aspects for manufacturing medicament for treating herpes
virus infection diseases.
[0015] In a fifth aspect, the present invention provides a method
for ex vivo activating immune cell, comprising steps of: mixing an
immune cell and an immunogenic composition, as in any of the
aforesaid first to second aspects, to form a mixed culture; then
incubating the mixed culture in a suitable medium to obtain the
activated immune cell.
[0016] In an sixth aspect, the present invention provides a method
for ex vivo inducing production of immune effector cells,
comprising steps of: providing an activated immune cell as in any
of the aforesaid first to second aspects and a lymphocyte; then
co-incubating the activated immune cell and lymphocyte in a
suitable medium to obtain the immune effector cell.
[0017] The objective of the present invention proves the
immunogenic composition could activate anti-CMV immune response
effectively, and the peptide pool has non-live virus,
non-CMV-infected cell, therefore not producing potential risk such
as infection, immune inhibition and immune tolerance. Moreover, the
method according to the present invention could activate immune
cells effectively, and further activate lymphocytes, and produce
the immune cells having activity against CMV.
BRIEF DESCRIPTION OF THE DRAWINGS
[0018] FIG. 1 is a schematic flow chart diagram illustrating the
method of the present invention;
[0019] FIG. 2 illustrates the diagram of CMV polypeptide-derived
peptide pool, with pp65 as the polypeptide;
[0020] FIG. 3 illustrates the flow chart of production of activated
lymphocytes, which are activated by dendritic cells;
[0021] FIG. 4 illustrates the effect of various CMV
proteins-derived peptide pools and their combinations on inducing
proliferation of PBMC, wherein panel A illustrates the result of
CFSE staining analysis, and panel B illustrates the result of
intracellular cytokine staining analysis;
[0022] FIG. 5 illustrates the effect of various CMV
proteins-derived peptide pools and their combinations on inducing
immune response of PBMC, wherein panel A and B illustrate the
results of various donators' PBMCs;
[0023] FIG. 6 illustrates the effect of various CMV
proteins-derived peptide pools and their combination on cell
proliferations of populations of CD4.sup.+ and CD8.sup.+ cells in
PBMCs;
[0024] FIG. 7, in panels A and B, illustrates the cytokine
secretion of PBMCs of various origins stimulated by various CMV
proteins-derived peptide pools and their combinations;
[0025] FIG. 8 illustrates the result of cellular cytokine staining
analysis of CMV-specific immune effector cells, which were
non-adherent PBMCs stimulated by DCs pulsed with the mixed pool of
5 CMV pentadecapeptides ; and
[0026] FIG. 9 is the bar chart of the result of FIG. 8; panel A
illustrates expression of IL-2 of each group, and panel B
illustrates expression of CD107a of each group.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0027] The applicants of the present invention develop an
immunogenic composition and a method for immune effector cells
against herpes virus. With reference to FIG. 1, the method of the
present invention involves the following aspects. First, using
various immunogenic compositions (10) containing peptides derived
from CMV peptides to stimulate immune cells (20), wherein the
immunogenic composition (10), for example, includes peptide pools
derived from CMV pp65, CMV IE-1, CMV VGLB, CMV VPAP and CMV p100
polypeptides (11) (12) (13) (14) (15) to obtain activated immune
cells (21) with capability of activating lymphocytes such as T
lymphocytes. Second, activated immune cells and lymphocytes are
co-incubated to obtain immune effector cells (31). Then, the immune
effector cells are further implanted into individuals (40) to
achieve the purpose of preventing and treating herpes virus related
diseases.
[0028] Applicants discover the mixed pools of two, three, four or
five CMV peptide pools, compared with only single or double CMV
protein-derived peptide pools, are more effective in activating
anti-CMV immune response; especially CMV specific CD8.sup.+ and
CD4.sup.+T lymphocytes are proved activated to generate high
effector functions. Such reveals that CMV immunogenic composition
and immune treatment of the present invention could be used to
prevent and treat herpes virus related diseases.
[0029] Therefore, in one aspect, the present invention provides an
immunogenic composition containing peptides derived from CMV, which
comprises: (a) at least one peptide selected from CMV pp65 and CMV
IE-1 polypeptides-derived peptide; and (b) one or more peptide
pool(s) selected from the group consisting of peptide pools of CMV
VGLB, CMV VPAP and CMVp100 polypeptides-derived peptide.
[0030] In another aspect, the present invention provides an
immunogenic composition containing peptides derived from CMV, which
comprises: (a) at least one peptide pool selected from CMV pp65 and
CMV IE-1 polypeptides-derived peptide pools; and (b) one or more
peptide pool(s) selected from the group consisting of CMV VGLB, CMV
VPAP and CMVp100 polypeptides-derived peptide pools.
[0031] CMV pp65 is a CMV structural protein, which is referred to
as HCMV phosphorylated matrix protein, and includes the following
characteristics: (1) Name: pp65, 65 kDa lower matrix
phosphoprotein, i.e. Tegument protein UL83; (2) Organism: Human
cytomegalovirus, belonging to Human herpesvirus-5 (HHV-5); (3)
Sequence length: 561 amino acids; and (4) Function: forming part of
the matrix of the HCMV virion. In a preferred embodiment, the
sequence is as set forth in serial number Swiss-Prot: P06725, NCBI
Accession NO: NP.sub.--040018 or SEQ ID NO: 1.
[0032] CMV IE-1 is a CMV major immediate early protein-1, which is
a transcription regulatory protein, and includes the following
characteristics: (1) Name: IE-1, UL123; (2) Organism: Human
cytomegalovirus, belonging to Human herpesvirus-5 (HHV-5); (3)
Sequence length: 491 amino acids; and (4) Function: Immediate-early
transcriptional regulator. The IE1 protein augments the activation
of the E1.7 promoter by EI2. In a preferred embodiment, the
sequence is as set forth in serial number Swiss-Prot: P13202
sequence, NCBI Accession NO: NP.sub.--040060 or SEQ ID NO: 2.
[0033] CMV VGLB is a CMV viral envelope glycoprotein, and includes
the following characteristics: (1) Name: Glycoprotein B (gB), also
named Glycoprotein GP55, and UL55; (2) Organism: Human
cytomegalovirus, belonging to Human herpesvirus-5 (HHV-5); (3)
Sequence length: 907 amino acids; and (4) Function: Type 1 membrane
protein and also as a viral ligand for CD209/DC-SIGN to allow
capturing of viral particles by dendritic cells (DCs) and
subsequently transferring viruses to permissive cells. In a
preferred embodiment, the sequence is as set forth in serial number
NCBI Accession NO: YP.sub.--081514 or SEQ ID NO: 3.
[0034] CMV VPAP is a CMV DNA polymerase processivity factor, which
is subunit of HCMV polymerase protein, and includes the following
characteristics: (1) Name: DNA polymerase processivity factor, also
named Polymerase accessory protein (PAP), and UL44; (2) Organism:
Human cytomegalovirus, belonging to Human herpesvirus-5 (HHV-5);
(3) Sequence length: 433 amino acids; and (4) Function: accessory
subunit of the DNA polymerase that acts to increase the
processivity of polymerization by similarity. In a preferred
embodiment, the sequence is as set forth in serial number NCBI
Accession NO: AAO73452 or SEQ ID NO: 4.
[0035] CMV p100 is a CMV capsid protein, which is 150 kDa HCMV
phosphoprotein and includes the following characteristics: (1)
Name: pp150, also named basic phosphoprotein (BPP), and UL32; (2)
Organism: Human cytomegalovirus, belonging to Human herpesvirus-5
(HHV-5); (3) Sequence length: 1046 amino acids; and (4) Function:
large structural phosphoprotein. In a preferred embodiment, the
sequence is as set forth in serial number NCBI Accession NO:
AAO73452 or SEQ ID NO: 5.
[0036] In a preferred embodiment of the present invention, CMV
pp65, IE-1, VGLB, VPAP and CMV p100 polypeptides respectively have
a sequence essentially identical to their corresponding sequences
as mentioned above.
[0037] According to the present invention, the term "-derived
peptide fragment" refers to peptide fragment or peptide that has
sequences of whole or a portion of protein.
[0038] According to the present invention, the term "essentially
identical to" refers to the variation of amino acid sequence that
is not necessarily affecting the activity of formed protein in
various species. Therefore, said variation will not affect the
activity of formed protein only if the amino acid sequence has a
certain homology among identified sequences. Preferably, said
certain homology is more than 70%, more preferably, having 80% of
homology, and the most preferably, having 90% of homology.
[0039] In a preferred embodiment of the present invention, the
above-mentioned immunogenic composition includes CMV pp65, CMV
IE-1, CMV VGLB, CMV VPAP and CMV p100 polypeptide-derived peptide
pools. The term "peptide pool", as used hereby, refers to a
combination containing partially overlapping peptides spanning
whole sequence or a portion sequence of a gene product.
[0040] In a preferred embodiment of the present invention, each
peptide of the polypeptides-derived peptide pool has a length of 12
to 18 amino acids.
[0041] In a preferred embodiment of the present invention, wherein
the two adjacent peptides of each peptide pool has a 10 to 15
continuous amino acid residues overlapping in sequence.
[0042] For example, if the aforesaid polypeptide-derived peptide
pool includes pentadecapeptides, that means a peptide pool of
15-mer peptide spanning full-length gene product with partial amino
acid overlapping in sequence, and likewise the peptide pools with
peptides of other lengths.
[0043] In a preferred embodiment of the present invention, the two
adjacent pentadecapeptides in the peptide pool derived from each
polypeptide have 11 continuous amino acid residues overlapping in
sequence. For instance, as shown in FIG. 2, the gene product of CMV
pp65 gene has a sequence as set forth in SEQ ID NO: 1, including
561 amino acids. The pentadecapeptides (11) derived from CMV pp65
polypeptide include multiple peptides, wherein a 15-mer peptide
(111) has a sequence of 15 continuous amino acids from the site
1.sup.st to 15.sup.th. Another adjacent 15-mer peptide (112) has a
sequence of 15 continuous amino acids from the site 5.sup.th to
15.sup.th, containing 11 continuous and partially overlapping amino
acids, and 4 continuous amino acid residue sequences from the site
16.sup.th to 19.sup.th. Yet another adjacent 15-mer peptide (113)
has a sequence of amino acids from the site 9.sup.th to 19.sup.th,
containing 11 continuous and partially overlapping amino acids and
4 continuous amino acid residues from the site 20.sup.th to
23.sup.rd, and so on. For the last sequence that has less than four
continuous amino acid residues, number of its overlapping amino
acids is increased to be pentadecapeptide such that each peptide of
the peptide pools is 15-mer.
[0044] According to the present invention, the above principle is
also adapted to the CMV IE-1, CMV VGLB, CMV VPAP and CMV p100
polypeptide-derived peptide pools.
[0045] According to the present invention, said peptide pools are
prepared by methods for preparing peptide pools known in the art.
In a preferred embodiment of the present invention, said peptide
pools are composed of synthetic peptides.
[0046] According to the present invention, said adjacent peptides
in said peptide pool refer to two peptides having the maximal
overlapping continuous amino acid sequences. Take said peptide pool
of 15-mer peptides for example, if the peptide pool is set to have
11 continuous amino acid sequences overlapping, the two adjacent
peptides respectively have 11 continuous amino acid sequences close
to C-terminal and 11 continuous amino acid sequences close to
N-terminal, which are identical.
[0047] According to the present invention, said immunogenic
composition further includes a physiologically acceptable carrier
or excipient.
[0048] According to the present invention, said immunogenic
composition further includes an immunostimulant.
[0049] The term "immunostimulant" as used hereby refers to any
material, which could substantially improve or enhance external
antibody- or cell-mediated immune responses against exogenous
antigen. A preferable immunostimulant includes an adjuvant. The
adjuvant includes materials which are designed to protect antigen
from fast metabolism, such as aluminum hydroxide or mineral oil;
and a stimulator of immune responses, such as copolymer of surface
active agent, including lipid A. Also included are Bordetalla
pertussis derived proteins and Mycobacterium tuberculosis derived
proteins, and glycolipids used as Immunoregulator, such as
.alpha.-galatosylceramide (.alpha.-GalCer) and derivatives, and CqG
derived polynucleotides.
[0050] Specifically, adjuvants were any commercially available
agent such as Freund's Incomplete Adjuvant and Complete Adjuvant
(Difco Laboratories, Detroit, Mich.); Merck Adjuvant 65 (Merck and
Company, Inc., Rahway, N.J.); AS-2 (SmithKline Beecham,
Philadelphia, Pa.); aluminum salt, such as aluminum hydroxide gel
or aluminum phosphate; the salt of calcium, iron or zinc; insoluble
suspension of acylated tyrosine; acylated sugars, cationically or
anionically derivatized polysaccharides; polyphosphazenes;
biodegradable microspheres; monophosphoryl lipid A and Quillaja
saponaria A (Quil A); and others such as GM-CSF, Interleukin-2, -7,
-12 cytokines and other similar growth factors also could be used
as adjuvants.
[0051] In another aspect, the present invention provides a method
for ex vivo activating immune cells, comprising steps of: mixing an
immune cell and the aforesaid immunogenic composition to form a
mixed cell culture; then incubating the mixed culture in a suitable
medium to obtain the activated immune cell.
[0052] According to the present invention, said immune cell is an
antigen-presenting cell; preferably, said immune cells include
dendritic cells; preferably dendritic cells are derived from
peripheral blood mononuclear cells, bone marrow cells,
hematopoietic progenitor cells or stem cells.
[0053] As known by persons of ordinary skill in the art, dendritic
cells are leukocytes existing in mammals, mainly in blood, exposed
tissues and other tissues, such as in epithelia tissue of skin,
nasal cavity, lung, stomach and intestine. The functions of
dendritic cells are regulating innate and acquired immune responses
induced by environmental stimulus; wherein the most important
function thereof is to process antigen and then present the
processed antigen to other leukocytes of immune system; therefore
dendritic cells belong to antigen-presenting cells. (Science, 288:
522-527, 2000; Curr Med. Chem., 13(14): 1591-607, 2006; Nat. Rev.
Cancer, 8(5): 351-60, 2008) In a preferred embodiment of the
present invention, the dendritic cells are human dendritic
cells.
[0054] According to the present invention, said suitable medium
comprises cytokines or growth factors; the cytokines are selected
from the group consisting of IL-2, IL-7 and combination
thereof.
[0055] In yet another aspect, the present invention provides a
method for ex vivo inducing immune effector cells, comprising steps
of: providing an aforesaid activated immune cell and a lymphocyte;
then co-incubating the activated immune cell and lymphocyte in a
suitable medium to obtain an immune effector cell.
[0056] Preferably, the lymphocyte is an autologous or allergenic
lymphocyte. More preferably, the lymphocyte is an autologous
lymphocyte.
[0057] According to the present invention, the lymphocytes are
derived from non-adherent peripheral blood mononuclear cells. In a
preferred embodiment of the present invention, the lymphocyte is T
lymphocyte or B lymphocyte; more preferably, the T lymphocyte is an
autologous lymphocyte.
[0058] The term "autologous" as used hereby and known by persons of
ordinary skill in the art, refers to being derived from the same
individual. For instance, said autologous immune cells refer to the
provided dendritic cells derived from selfsame individual, whereby
avoiding unwanted immune response, such as heterologous immune
response.
[0059] Based on the immunogenic composition of the present
invention, which is derived from cytomegalovirus belonging to
herpes virus family, the obtained activated immune cell according
to the method of the present invention could also activate herpes
virus-specific lymphocyte, and then be applied for inducing immune
response against herpes virus.
[0060] In accordance with the present invention, the herpes virus
includes, but is not limited to: cytomegalovirus, Herpes simplex
virus-1 (HSV-1), Herpes simplex virus-2 (HSV-2), Varicella Zoster
virus (VSV), Epstein-Barr Virus (EBV), Human herpes virus-6
(HHV-6), Human herpes virus-7 (HHV-7) and Human herpes virus-8
(HHV-8).
[0061] The present invention was further illustrated by the
following examples; it should be understood that the examples and
embodiments described herein are for illustrative purposes only and
should not be construed as limiting the embodiments set forth
herein.
Materials and Methods:
1. Peptides and Antigens
[0062] The 15-mer peptide pools were purchased from JPT Peptide
Technologies GmbH (Berlin, Germany), including the mixtures of
pentadecapeptides of 11 partially overlapping amino acids spanning
the entire 427 amino acids of the HCMVA pp65 (SEQ ID NO:1) (561
amino acids, 138 peptides), HCMVA IE-1(SEQ ID NO:2) (491 amino
acids, 120 peptides), HCMVA VPAP (SEQ ID NO:3) (433 amino acids,
106 peptides), HCMVA p100 (SEQ ID NO:4) (1048 amino acids, 259
peptides), and HCMVT VGLB (SEQ ID NO:5) (907 amino acids, 224
peptides). Other antigens and peptides can be synthesized by
different methods, including WT-1 (Wilm's tumor 1)-derived peptide
pool (Swiss prot: P19544; as shown by SEQ ID. NO:6) (WT33; JPT
Peptide Technologies GmbH, Berlin, Germany) and core protein of
Hepatitis C virus-derived peptide pool (NCBI ACCESSION: ABV46234
(1-191 //product="core protein"; as shown by SEQ ID. NO: 7), and
Peptide Scan 15/11, from JPT Peptide Technologies GmbH, Berlin,
Germany, all of which are used as non-specific peptide pools.
2. Isolation of Peripheral Blood Mononuclear Cells (PBMCs)
[0063] Apheresis blood or whole blood was voluntarily donated by
healthy donors. PBMCs were prepared by gradient density
centrifugation in Ficoll-Hypaque (GE Healthcare Bio-Sciences AB,
NJ, USA) as previously described {Han, 2008 #5292}. Viability of
the human PBMCs was determined by trypan blue staining and only
cells with a viability of .gtoreq.80% were used.
3. Preparation of Dendritic Cells (DCs)
[0064] PBMCs were placed into 6-well plates of 1.times.10.sup.7
cells/well and adhered for 2 hours in the medium AIM-V (Gibco-BRL,
CA, USA). Then, non-adherent cells were removed gently and frozen
as source of T cells for further co-culture. Adherent cells were
cultured in the medium AIM-V supplemented with 50 ng/ml GM-CSF
(Biosource, CA, USA) and 25 ng/ml IL-4 (Biosource, CA, USA). For
the generation of DCs, cells were cultured with GM-CSF and IL-4 for
24 hours and incubated for another 24 hours with IFN-.gamma. (20
ng/ml) (Gentaur), TNF-.alpha. (50 ng/ml) (R&D systems, MN,
USA), IL-1.beta. (10 ng/ml) (R&D systems, MN, USA), IL-6 (10
ng/ml) (R&D systems) and PGE2 (1 .mu.M) (Sigma-Aldrich, MO,
USA) for maturation. The phenotype of DCs was analyzed with flow
cytometry.
4. Dendritic Cell-Activated and Ex Vivo Expanded Antigen-Specific
Immune Cells
[0065] As shown in FIG. 3, the methods were approximately processed
as shown in the figure. Dendritic cell-activated immune cells were
generated as previously described (Han et al, supra). In brief,
mature DCs were loaded with peptides (5 .mu.g/ml) or other antigens
for 3 hours and irradiated (2,500 rads). The DCs were cocultured
with autologous non-adherent PBMCs at a ratio of 1:20 in AIM-V with
2% human AB serum. On Day 3, IL-2 (Gentaur, Aachen, Germany), IL-7
(Gentaur) and IL-15 (Gentaur) were added. Then, fresh medium with
cytokines were added every other days. The function of T cells was
analyzed by intracellular cytokine staining.
5. CFSE Cell Proliferating Analysis
[0066] Briefly, 1.times.10.sup.6 PBMCs were labeled with CFSE
(carboxyfluorescein diacetate succinimidyl ester-based), and then
stimulated by antigens in culture. On Day 3, IL-2 (Gentaur, Aachen,
Germany) and IL-15 (Gentaur) were added. Then, fresh medium with
cytokines were added every other days until Day 7 and then were
subjected to flow cytometry analysis.
6. CD107a and Intracellular Cytokine Staining
[0067] The assay was performed as described (Han et al., supra).
Briefly, 3.times.10.sup.5 expanded CMV immune effector cells were
stimulated with antigen-loaded autologous DCs or monocytes in AIM-V
with or without anti-CD107a-FITC. Monensin (Sigma) was added 1 hour
after stimulation. After 5 hours, cells were stained for CD4 and
CD8, fixed, permeabilized, and stained with antibodies against
IFN-.gamma. (or TNF-.alpha., or IL-2) (all from BD Bioscience)
using FIX/PERM and PERM/Wash solution (BD).
7. Enzyme-Linked ImmunoSpot Assay (ELISpot Assay)
[0068] Interferon-.gamma. (IFN-.gamma.) ELISPOT assays were
performed by incubation of 1.times.10.sup.5 PBMCs/well with
different combinations of pepmix in ninety-six-well, ELISPOT plates
(Millipore, Mass.) precoated with anti-human IFN-.gamma. monoclonal
antibody (1-D1K; MabTech, Sweden) and blocked by 5% inactivated
human AB serum in duplicate. After 18 to 20 hours of culturing at
37.degree. C. in a humidified incubator under 5% CO.sub.2, plates
were washed and stained with 1 .mu.ml biotinylated anti-human
IFN-.gamma. as the secondary antibody (7-B6-1; MabTech), followed
by streptavidin conjugated alkaline phosphatase (streptavidin
conjugated ALP) (MabTech) and BCIP/NBT-plus substrate (Bio-Rad) to
develop the color reaction. The colored spots were counted using
the EliSpot Reader (AutoImmune Diagnostika). Results were presented
by IFN-.gamma. spot-forming cells (SFC)/10.sup.6 PBMCs.
EXAMPLE 1
To Analyze the Effect of Peptide Pools of Various CMV Proteins and
Their Combinations on Stimulating PBMC By CFSE Staining Method
[0069] The objective of the present example is to use peptide pools
of various CMV proteins and their combinations to stimulate PBMC,
and analyze the effect of peptide pools of various CMV-derived
proteins and their combinations on proliferation of PBMC by CFSE
staining, to understand the effect of various combinations on
inducing immune response.
[0070] By method as described in General materials and method,
CFSE-labeled PBMCs were stimulated by various peptide pools or
their combinations for 7 days, as divided into the following
groups: [0071] (1) The CMV pentadecapeptides of pp65 were indicated
as sample 1. [0072] (2) The CMV pentadecapeptides of VGLB were
indicated as sample 2. [0073] (3) The CMV pentadecapeptides of IE-1
were indicated as sample 3. [0074] (4) The CMV pentadecapeptides of
p100 were indicated as sample 4. [0075] (5) The CMV
pentadecapeptides of VPAP were indicated as sample 5. [0076] (6)
The CMV pentadecapeptides of pp65 and VGLB were indicated as sample
6. [0077] (7) The CMV pentadecapeptides of pp65 and IE-1 were
indicated as sample 7. [0078] (8) The CMV pentadecapeptides of VGLB
and IE-1 were indicated as sample 8. [0079] (9) The CMV
pentadecapeptides of pp65, VGLB and IE-1 were indicated as sample
9. [0080] (10) The CMV pentadecapeptides of pp65, VGLB, IE-1 and
p100 were indicated as sample 10. [0081] (11) The CMV
pentadecapeptides of pp65, VGLB, IE-1, p100 and VPAP were indicated
as sample 11.
[0082] Further, the following groups worked as the control: [0083]
(12) CFSE-labeled PBMCs were indicated as no stimulation control
for background value as sample 12. [0084] (13) Co-culture of
CFSE-labeled PBMCs and dendritic cells loaded with core protein of
Hepatitis C virus derived peptide pool worked as the negative
control, indicated as sample 13.
[0085] The above stimulated-PBMCs were subjected to
antigen-specific proliferation and intracellular cytokine staining
analysis by the method as described in General materials and
method. The obtained results were minus value obtained from PBMCs
before being plotted as a graph.
[0086] As shown in FIG. 4, panel A illustrates the situation of
cell proliferation under the stimulation by various mixed peptide
pools; panel B illustrates cells' abilities to express IFN-.gamma.,
wherein the cells proliferate under the stimulations by various
mixed peptide pools.
[0087] The above results show that: (1) 5 CMV proteins-derived
peptide pools individually induce responses; (2) any single
polypeptide of pp65, VGLB or p100 polypeptide derived peptide pool
could also induce immune response; (3) the result of two peptide
pools mixed is better than only one peptide pool, and (4) the
immune response induced by the peptide pool either of pp65 or VGLB
is better than any of the rest CMV protein-derived peptide pool,
combination of said peptide pools has additive effect on enhancing
immune response, and the effect is better when more peptide pools
are mixed.
EXAMPLE 2
To Analyze the Effect of Peptide Pools of Various CMV Proteins and
Their Combinations on Stimulating PBMC By ELISpot Assay
[0088] The objective of the present example is to use various CMV
protein-derived peptide pools and their combinations to stimulate
PBMC, and analyze the effect of various CMV protein-derived peptide
pools and their combinations on cellular function of PBMC by
ELISpot assay.
[0089] By method as described in General materials and method,
newly-isolated PBMCs were separately obtained from various
donators. PBMCs were further stimulated by the following groups of
various combinations of peptide, incubated for 20 hours, and
processed with IFN-.gamma. analysis by ELISpot as above-mentioned
in General materials and method. [0090] (1) The CMV
pentadecapeptides of pp65 were indicated as sample 1. [0091] (2)
The CMV pentadecapeptides of VGLB were indicated as sample 2.
[0092] (3) The CMV pentadecapeptides of IE-1 were indicated as
sample 3. [0093] (4) The CMV pentadecapeptides of pp65 and VGLB
were indicated as sample 4. [0094] (5) The CMV pentadecapeptides of
pp65 and IE-1 were indicated as sample 5. [0095] (6) The CMV
pentadecapeptides of pp65, VGLB and IE-1 were indicated as sample
6. [0096] (7) The CMV pentadecapeptides of pp65 VGLB, IE-1 and p100
were indicated as sample 7. [0097] (8) The CMV pentadecapeptides of
pp65, VGLB, IE-1, p100 and VPAP were indicated as sample 8.
[0098] As shown in FIG. 5, the effect of the group pp65+VGLB (as
bar 4) or pp65+IE-1 (as bar 5) on stimulating PMBC to produce
IFN-.gamma. is more prominent than that of pp65 (as bar 1). The
stimulating effect of pp65+VGLB (bar 4) is better than pp65+IE-1
(as bar 5). And the effect of combination of various CMV
protein-derived peptide pools (as bar 6, 7 or 8) is better than
that of the group having only two CMV protein-derived peptide pools
(as bar 4 or 5) or that of the group of pp65 alone (as bar 1).
EXAMPLE 3
To Analyze the Proliferation of Cell Populations of PBMC Stimulated
By CMV Proteins-Derived Peptide Pool and Their Combinations
[0099] The objective of the present example is to use various CMV
protein-derived peptide pools and their combinations to stimulate
PBMC, and to analyze the effect of the CMV protein-derived peptide
pools and their combinations on inducing proliferation of CD4.sup.+
and CD8.sup.+ populations in PBMC.
[0100] The CFSE-labeled PBMCs were respectively cultured with the
stimulus as indicated as the following: (1) the pentadecapeptides
of HCMVA pp65 was indicated as "pp65"; (2) the mixed pool of
pentadecapeptides of both HCMVA pp65 and HCMVA IE-1, including
HCMVA pp65 polypeptide-derived peptide pool and HCMVA IE-1
polypeptide-derived peptide pool, were indicated as "pp65/IE-1";
(3) the mixed pool of the pentadecapeptides of HCMVA pp65, HCMVA
IE-1, HCMVA VPAP, HCMVA p100 and HCMVT VGLB were indicated as "5
pepmix"; (4) the nonspecific pentadecapeptides were indicated as
"WT-1"; (5) anti-CD3 antibody as positive control was indicated as
"anti-CD3", and, incubated for seven days, and were subjected to
antigen-specific proliferation by the method as mentioned in
General materials and method, especially to cell proliferation of
CD4.sup.+ and CD8.sup.+ cell populations, and separately incubated
CFSE-labeled PBMC as no stimulation control was indicated as
"PBMC".
[0101] As shown in FIG. 6, the percentage of CFSE-diluted cells
(i.e. proliferation cell) of each group was as indicated. Among the
mixed pool of CMV protein-derived pentadecapeptides (pp65) or the
mixed pool of two CMV-derived protein pentadecapeptides
(pp65/IE-1), the mixed pool of pentadecapeptides derived from five
CMV protein (5 pepmix) induced the highest proliferation of
CD4.sup.+ and CD8.sup.+ groups cell populations within PBMC,
demonstrating that the mixture of peptide pools derived from five
CMV protein had the best immunogenicity.
EXAMPLE 4
Functional Analysis of Various Peptide Pools Derived From CMV
Protein Stimulating PBMC
[0102] The present invention further analyzed the effect of CMV
protein-derived peptide pools and their combinations on stimulating
the cells within PBMC, and analyzed cytokinessecretion of PBMC to
determine immune function and confirm the immunogenicity of various
combinations of peptide pools.
[0103] The PBMCs from two donators were respectively stimulated by
the stimulus as follows: (1) the pentadecapeptides of HCMVA pp65
were indicated as "pp65"; (2) the mixed pool of pentadecapeptides
of both HCMVA pp65 and HCMVA IE-1, including HCMVA pp65
polypeptide-derived peptide pool and HCMVA IE-1 polypeptide-derived
peptide pool, was indicated as "pp65/IE-1"; (3) the mixed pool of
pentadecapeptides of HCMVA pp65, HCMVA IE-1, HCMVA VPAP, HCMVA p100
and HCMVT VGLB was indicated as "5 pepmix"; (4) the nonspecific
pentadecapeptides were indicated as "WT-1"; (5) the anti-CD3
antibody as positive control was indicated as "anti-CD3", and was
incubated for seven days and processed with intracellular cytokine
staining (ICCS) as mentioned in General materials and method, to
analyze expression of IL-2 and IFN-.gamma.. Separately incubated
PBMC was used as no stimulation control and indicated as "PBMC
only".
[0104] FIG. 7, panels A and B respectively expressed results of
PMBCs from various origins by the above-mentioned analysis, as
illustrated by the bar chart, respectively representing expression
of IL-2 and/or IFN-.gamma. of PBMC. Based on the results, among the
peptide pool derived from single CMV protein (pp65) or the mixed
pool of peptide pool derived from two CMV proteins (pp65/IE-1), the
mixed pool of peptide pools of five CMV antigen (5 pepmix)
stimulated had a highest activity to stimulate PBMCs to express
IL-2 and/or IFN-.gamma., demonstrating that the combination of
peptide pools of five CMV proteins had the best immunogenicity.
EXAMPLE 5
To Produce CMV-Specific Immune Cells By Stimulating PMBC with
Dendritic Cells (DCs)
[0105] The present example used DCs that were pulsed with the mixed
pool of pentadecapeptides derived from five CMV proteins to
stimulate non-adherent PBMC to evaluate its effect on generation of
CMV-specific immune cells.
[0106] The dendritic cells treated by the mixed pool of
pentadecapeptides derived from 5 CMV proteins and non-adherent PMBC
(as the source of T lymphocytes) were prepared by the method as
mentioned in General materials and method, and co-incubated (as
shown in FIG. 3). After being co-incubated for 15 days, the
DC-activated lymphocytes were respectively re-stimulated by the
dendritic cells loaded with an individual peptide pool derived from
each CMV protein (pp65, IE-1, VGLB, VPAP and p100) and their
combination for five hours, meanwhile Phorbol (PMA) and Ionomycin
(PMA+Ionomycin) were used to stimulate DC-activated lymphocytes as
positive control and homologous dendritic cell treated with
non-specific antigen was used as control. For evaluating the
function of antigen specific-immune cell, the re-stimulated
lymphocytes were examined by intracellular cytokine staining (ICCS)
to IFN-.gamma., IL-2 and TNF-.alpha., and by the staining the cell
marker of degranulation CD107a.
[0107] FIG. 8 was the result of the above intracellular cytokine
staining, wherein the expression of cytokine such as IFN-.gamma.,
IL-2, TNF-.alpha. and CD107a was as indicated. The bar chart
illustrated in panel A and panel B of FIG. 9 was plotted based on
the result of FIG. 8, and respectively demonstrated the percentages
of cell populations expressing IL-2 and/or TNF-.alpha., and the
percentages of cell populations expressing IFN-.gamma. and/or
CD107a. The result showed that activated-immune cells induced by 5
pepmix had specific response to the pentadecapeptides derived from
any of CMV proteins, wherein the immune response against pp65 and
VGLB was the most prominent one. The group that is re-stimulated
group by dendritic cells treated with 5 pepmix induced a highest
cytokine production of immune cells.
[0108] The result of the above examples demonstrated that the
combined pools of pentadecapeptides derived from multiple CMV
proteins (up to five proteins) could effectively activate both
CD4.sup.+ and CD8.sup.+ T lymphocytes in a short period of time.
The antigen-specific proliferation and the production of effector
cytokine of CD4.sup.+ and CD8.sup.+ T lymphocytes were improved
obviously, demonstrating that the combination of pentadecapeptides
derived from CMV proteins was useful as an effective vaccine or
immune treatment for establishing anti-CMV immunity. As shown in
FIG. 6 and FIG. 7, the combination of pentadecapeptides derived
from five CMV proteins induced proliferation and cytokine
production from CD4.sup.+ and CD8.sup.+ cells in PBMC. Although
pentadecapeptides derived from single or two CMV proteins could
stimulate immune response, the combination of pentadecapeptides
derived from five CMV proteins could generate the strongest antigen
specific immune response. The function of immune effector cells was
analyzed and assessed by multi-color flow cytometry staining immune
effector cell cytokines and cell marker of degranulation, CD107a.
As shown in FIG. 8 and FIG. 9, compared with pentadecapeptides
derived from only one or two CMV proteins, the combination of
pentadecapeptides derived from five CMV proteins (5 pepmix) is the
most effective to induce production of immune effector cytokine and
cell marker of degranulation, of CD107a, with the combination of
the five CMV peptide pools being the most effective CMV vaccine or
immunogen.
[0109] Even though numerous characteristics and advantages of the
present invention have been set forth in the foregoing description,
together with details of the structure and features of the
invention, the disclosure is illustrative only. Changes may be made
in the details, especially in matters of shape, size, and
arrangement of parts within the principles of the invention to the
full extent indicated by the broad general meaning of the terms in
which the appended claims are expressed.
Sequence CWU 1
1
71561PRTHuman cytomegalovirus (strain AD169)pp65(1)..(561) 1Met Glu
Ser Arg Gly Arg Arg Cys Pro Glu Met Ile Ser Val Leu Gly1 5 10 15Pro
Ile Ser Gly His Val Leu Lys Ala Val Phe Ser Arg Gly Asp Thr 20 25
30Pro Val Leu Pro His Glu Thr Arg Leu Leu Gln Thr Gly Ile His Val
35 40 45Arg Val Ser Gln Pro Ser Leu Ile Leu Val Ser Gln Tyr Thr Pro
Asp 50 55 60Ser Thr Pro Cys His Arg Gly Asp Asn Gln Leu Gln Val Gln
His Thr65 70 75 80Tyr Phe Thr Gly Ser Glu Val Glu Asn Val Ser Val
Asn Val His Asn 85 90 95Pro Thr Gly Arg Ser Ile Cys Pro Ser Gln Glu
Pro Met Ser Ile Tyr 100 105 110Val Tyr Ala Leu Pro Leu Lys Met Leu
Asn Ile Pro Ser Ile Asn Val 115 120 125His His Tyr Pro Ser Ala Ala
Glu Arg Lys His Arg His Leu Pro Val 130 135 140Ala Asp Ala Val Ile
His Ala Ser Gly Lys Gln Met Trp Gln Ala Arg145 150 155 160Leu Thr
Val Ser Gly Leu Ala Trp Thr Arg Gln Gln Asn Gln Trp Lys 165 170
175Glu Pro Asp Val Tyr Tyr Thr Ser Ala Phe Val Phe Pro Thr Lys Asp
180 185 190Val Ala Leu Arg His Val Val Cys Ala His Glu Leu Val Cys
Ser Met 195 200 205Glu Asn Thr Arg Ala Thr Lys Met Gln Val Ile Gly
Asp Gln Tyr Val 210 215 220Lys Val Tyr Leu Glu Ser Phe Cys Glu Asp
Val Pro Ser Gly Lys Leu225 230 235 240Phe Met His Val Thr Leu Gly
Ser Asp Val Glu Glu Asp Leu Thr Met 245 250 255Thr Arg Asn Pro Gln
Pro Phe Met Arg Pro His Glu Arg Asn Gly Phe 260 265 270Thr Val Leu
Cys Pro Lys Asn Met Ile Ile Lys Pro Gly Lys Ile Ser 275 280 285His
Ile Met Leu Asp Val Ala Phe Thr Ser His Glu His Phe Gly Leu 290 295
300Leu Cys Pro Lys Ser Ile Pro Gly Leu Ser Ile Ser Gly Asn Leu
Leu305 310 315 320Met Asn Gly Gln Gln Ile Phe Leu Glu Val Gln Ala
Ile Arg Glu Thr 325 330 335Val Glu Leu Arg Gln Tyr Asp Pro Val Ala
Ala Leu Phe Phe Phe Asp 340 345 350Ile Asp Leu Leu Leu Gln Arg Gly
Pro Gln Tyr Ser Glu His Pro Thr 355 360 365Phe Thr Ser Gln Tyr Arg
Ile Gln Gly Lys Leu Glu Tyr Arg His Thr 370 375 380Trp Asp Arg His
Asp Glu Gly Ala Ala Gln Gly Asp Asp Asp Val Trp385 390 395 400Thr
Ser Gly Ser Asp Ser Asp Glu Glu Leu Val Thr Thr Glu Arg Lys 405 410
415Thr Pro Arg Val Thr Gly Gly Gly Ala Met Ala Gly Ala Ser Thr Ser
420 425 430Ala Gly Arg Lys Arg Lys Ser Ala Ser Ser Ala Thr Ala Cys
Thr Ser 435 440 445Gly Val Met Thr Arg Gly Arg Leu Lys Ala Glu Ser
Thr Val Ala Pro 450 455 460Glu Glu Asp Thr Asp Glu Asp Ser Asp Asn
Glu Ile His Asn Pro Ala465 470 475 480Val Phe Thr Trp Pro Pro Trp
Gln Ala Gly Ile Leu Ala Arg Asn Leu 485 490 495Val Pro Met Val Ala
Thr Val Gln Gly Gln Asn Leu Lys Tyr Gln Glu 500 505 510Phe Phe Trp
Asp Ala Asn Asp Ile Tyr Arg Ile Phe Ala Glu Leu Glu 515 520 525Gly
Val Trp Gln Pro Ala Ala Gln Pro Lys Arg Arg Arg His Arg Gln 530 535
540Asp Ala Leu Pro Gly Pro Cys Ile Ala Ser Thr Pro Lys Lys His
Arg545 550 555 560Gly2491PRTHuman cytomegalovirus (strain
AD169)IE-1(1)..(491) 2Met Glu Ser Ser Ala Lys Arg Lys Met Asp Pro
Asp Asn Pro Asp Glu1 5 10 15Gly Pro Ser Ser Lys Val Pro Arg Pro Glu
Thr Pro Val Thr Lys Ala 20 25 30Thr Thr Phe Leu Gln Thr Met Leu Arg
Lys Glu Val Asn Ser Gln Leu 35 40 45Ser Leu Gly Asp Pro Leu Phe Pro
Glu Leu Ala Glu Glu Ser Leu Lys 50 55 60Thr Phe Glu Gln Val Thr Glu
Asp Cys Asn Glu Asn Pro Glu Lys Asp65 70 75 80Val Leu Ala Glu Leu
Val Lys Gln Ile Lys Val Arg Val Asp Met Val 85 90 95Arg His Arg Ile
Lys Glu His Met Leu Lys Lys Tyr Thr Gln Thr Glu 100 105 110Glu Lys
Phe Thr Gly Ala Phe Asn Met Met Gly Gly Cys Leu Gln Asn 115 120
125Ala Leu Asp Ile Leu Asp Lys Val His Glu Pro Phe Glu Glu Met Lys
130 135 140Cys Ile Gly Leu Thr Met Gln Ser Met Tyr Glu Asn Tyr Ile
Val Pro145 150 155 160Glu Asp Lys Arg Glu Met Trp Met Ala Cys Ile
Lys Glu Leu His Asp 165 170 175Val Ser Lys Gly Ala Ala Asn Lys Leu
Gly Gly Ala Leu Gln Ala Lys 180 185 190Ala Arg Ala Lys Lys Asp Glu
Leu Arg Arg Lys Met Met Tyr Met Cys 195 200 205Tyr Arg Asn Ile Glu
Phe Phe Thr Lys Asn Ser Ala Phe Pro Lys Thr 210 215 220Thr Asn Gly
Cys Ser Gln Ala Met Ala Ala Leu Gln Asn Leu Pro Gln225 230 235
240Cys Ser Pro Asp Glu Ile Met Ala Tyr Ala Gln Lys Ile Phe Lys Ile
245 250 255Leu Asp Glu Glu Arg Asp Lys Val Leu Thr His Ile Asp His
Ile Phe 260 265 270Met Asp Ile Leu Thr Thr Cys Val Glu Thr Met Cys
Asn Glu Tyr Lys 275 280 285Val Thr Ser Asp Ala Cys Met Met Thr Met
Tyr Gly Gly Ile Ser Leu 290 295 300Leu Ser Glu Phe Cys Arg Val Leu
Cys Cys Tyr Val Leu Glu Glu Thr305 310 315 320Ser Val Met Leu Ala
Lys Arg Pro Leu Ile Thr Lys Pro Glu Val Ile 325 330 335Ser Val Met
Lys Arg Arg Ile Glu Glu Ile Cys Met Lys Val Phe Ala 340 345 350Gln
Tyr Ile Leu Gly Ala Asp Pro Leu Arg Val Cys Ser Pro Ser Val 355 360
365Asp Asp Leu Arg Ala Ile Ala Glu Glu Ser Asp Glu Glu Glu Ala Ile
370 375 380Val Ala Tyr Thr Leu Ala Thr Ala Gly Val Ser Ser Ser Asp
Ser Leu385 390 395 400Val Ser Pro Pro Glu Ser Pro Val Pro Ala Thr
Ile Pro Leu Ser Ser 405 410 415Val Ile Val Ala Glu Asn Ser Asp Gln
Glu Glu Ser Glu Gln Ser Asp 420 425 430Glu Glu Glu Glu Glu Gly Ala
Gln Glu Glu Arg Glu Asp Thr Val Ser 435 440 445Val Lys Ser Glu Pro
Val Ser Glu Ile Glu Glu Val Ala Pro Glu Glu 450 455 460Glu Glu Asp
Gly Ala Glu Glu Pro Thr Ala Ser Gly Gly Lys Ser Thr465 470 475
480His Pro Met Val Thr Arg Ser Lys Ala Asp Gln 485 4903907PRTHuman
cytomegalovirus (strain Merlin)VGLB(1)..(907) 3Met Glu Ser Arg Ile
Trp Cys Leu Val Val Cys Val Asn Leu Cys Ile1 5 10 15Val Cys Leu Gly
Ala Ala Val Ser Ser Ser Ser Thr Arg Gly Thr Ser 20 25 30Ala Thr His
Ser His His Ser Ser His Thr Thr Ser Ala Ala His Ser 35 40 45Arg Ser
Gly Ser Val Ser Gln Arg Val Thr Ser Ser Gln Thr Val Ser 50 55 60His
Gly Val Asn Glu Thr Ile Tyr Asn Thr Thr Leu Lys Tyr Gly Asp65 70 75
80Val Val Gly Val Asn Thr Thr Lys Tyr Pro Tyr Arg Val Cys Ser Met
85 90 95Ala Gln Gly Thr Asp Leu Ile Arg Phe Glu Arg Asn Ile Val Cys
Thr 100 105 110Ser Met Lys Pro Ile Asn Glu Asp Leu Asp Glu Gly Ile
Met Val Val 115 120 125Tyr Lys Arg Asn Ile Val Ala His Thr Phe Lys
Val Arg Val Tyr Gln 130 135 140Lys Val Leu Thr Phe Arg Arg Ser Tyr
Ala Tyr Ile His Thr Thr Tyr145 150 155 160Leu Leu Gly Ser Asn Thr
Glu Tyr Val Ala Pro Pro Met Trp Glu Ile 165 170 175His His Ile Asn
Ser His Ser Gln Cys Tyr Ser Ser Tyr Ser Arg Val 180 185 190Ile Ala
Gly Thr Val Phe Val Ala Tyr His Arg Asp Ser Tyr Glu Asn 195 200
205Lys Thr Met Gln Leu Met Pro Asp Asp Tyr Ser Asn Thr His Ser Thr
210 215 220Arg Tyr Val Thr Val Lys Asp Gln Trp His Ser Arg Gly Ser
Thr Trp225 230 235 240Leu Tyr Arg Glu Thr Cys Asn Leu Asn Cys Met
Val Thr Ile Thr Thr 245 250 255Ala Arg Ser Lys Tyr Pro Tyr His Phe
Phe Ala Thr Ser Thr Gly Asp 260 265 270Val Val Asp Ile Ser Pro Phe
Tyr Asn Gly Thr Asn Arg Asn Ala Ser 275 280 285Tyr Phe Gly Glu Asn
Ala Asp Lys Phe Phe Ile Phe Pro Asn Tyr Thr 290 295 300Ile Val Ser
Asp Phe Gly Arg Pro Asn Ser Ala Leu Glu Thr His Arg305 310 315
320Leu Val Ala Phe Leu Glu Arg Ala Asp Ser Val Ile Ser Trp Asp Ile
325 330 335Gln Asp Glu Lys Asn Val Thr Cys Gln Leu Thr Phe Trp Glu
Ala Ser 340 345 350Glu Arg Thr Ile Arg Ser Glu Ala Glu Asp Ser Tyr
His Phe Ser Ser 355 360 365Ala Lys Met Thr Ala Thr Phe Leu Ser Lys
Lys Gln Glu Val Asn Met 370 375 380Ser Asp Ser Ala Leu Asp Cys Val
Arg Asp Glu Ala Ile Asn Lys Leu385 390 395 400Gln Gln Ile Phe Asn
Thr Ser Tyr Asn Gln Thr Tyr Glu Lys Tyr Gly 405 410 415Asn Val Ser
Val Phe Glu Thr Thr Gly Gly Leu Val Val Phe Trp Gln 420 425 430Gly
Ile Lys Gln Lys Ser Leu Val Glu Leu Glu Arg Leu Ala Asn Arg 435 440
445Ser Ser Leu Asn Leu Thr His Asn Arg Thr Lys Arg Ser Thr Asp Gly
450 455 460Asn Asn Ala Thr His Leu Ser Asn Met Glu Ser Val His Asn
Leu Val465 470 475 480Tyr Ala Gln Leu Gln Phe Thr Tyr Asp Thr Leu
Arg Gly Tyr Ile Asn 485 490 495Arg Ala Leu Ala Gln Ile Ala Glu Ala
Trp Cys Val Asp Gln Arg Arg 500 505 510Thr Leu Glu Val Phe Lys Glu
Leu Ser Lys Ile Asn Pro Ser Ala Ile 515 520 525Leu Ser Ala Ile Tyr
Asn Lys Pro Ile Ala Ala Arg Phe Met Gly Asp 530 535 540Val Leu Gly
Leu Ala Ser Cys Val Thr Ile Asn Gln Thr Ser Val Lys545 550 555
560Val Leu Arg Asp Met Asn Val Lys Glu Ser Pro Gly Arg Cys Tyr Ser
565 570 575Arg Pro Val Val Ile Phe Asn Phe Ala Asn Ser Ser Tyr Val
Gln Tyr 580 585 590Gly Gln Leu Gly Glu Asp Asn Glu Ile Leu Leu Gly
Asn His Arg Thr 595 600 605Glu Glu Cys Gln Leu Pro Ser Leu Lys Ile
Phe Ile Ala Gly Asn Ser 610 615 620Ala Tyr Glu Tyr Val Asp Tyr Leu
Phe Lys Arg Met Ile Asp Leu Ser625 630 635 640Ser Ile Ser Thr Val
Asp Ser Met Ile Ala Leu Asp Ile Asp Pro Leu 645 650 655Glu Asn Thr
Asp Phe Arg Val Leu Glu Leu Tyr Ser Gln Lys Glu Leu 660 665 670Arg
Ser Ser Asn Val Phe Asp Leu Glu Glu Ile Met Arg Glu Phe Asn 675 680
685Ser Tyr Lys Gln Arg Val Lys Tyr Val Glu Asp Lys Val Val Asp Pro
690 695 700Leu Pro Pro Tyr Leu Lys Gly Leu Asp Asp Leu Met Ser Gly
Leu Gly705 710 715 720Ala Ala Gly Lys Ala Val Gly Val Ala Ile Gly
Ala Val Gly Gly Ala 725 730 735Val Ala Ser Val Val Glu Gly Val Ala
Thr Phe Leu Lys Asn Pro Phe 740 745 750Gly Ala Phe Thr Ile Ile Leu
Val Ala Ile Ala Val Val Ile Ile Thr 755 760 765Tyr Leu Ile Tyr Thr
Arg Gln Arg Arg Leu Cys Thr Gln Pro Leu Gln 770 775 780Asn Leu Phe
Pro Tyr Leu Val Ser Ala Asp Gly Thr Thr Val Thr Ser785 790 795
800Gly Ser Thr Lys Asp Thr Ser Leu Gln Ala Pro Pro Ser Tyr Glu Glu
805 810 815Ser Val Tyr Asn Ser Gly Arg Lys Gly Pro Gly Pro Pro Ser
Ser Asp 820 825 830Ala Ser Thr Ala Ala Pro Pro Tyr Thr Asn Glu Gln
Ala Tyr Gln Met 835 840 845Leu Leu Ala Leu Ala Arg Leu Asp Ala Glu
Gln Arg Ala Gln Gln Asn 850 855 860Gly Thr Asp Ser Leu Asp Gly Arg
Thr Gly Thr Gln Asp Lys Gly Gln865 870 875 880Lys Pro Asn Leu Leu
Asp Arg Leu Arg His Arg Lys Asn Gly Tyr Arg 885 890 895His Leu Lys
Asp Ser Asp Glu Glu Glu Asn Val 900 9054433PRTHuman cytomegalovirus
(strain Towne)VPAP(1)..(433) 4Met Asp Arg Lys Thr Arg Leu Ser Glu
Pro Pro Thr Leu Ala Leu Arg1 5 10 15Leu Lys Pro Tyr Lys Thr Ala Ile
Gln Gln Leu Arg Ser Val Ile Arg 20 25 30Ala Leu Lys Glu Asn Thr Thr
Val Thr Phe Leu Pro Thr Pro Ser Leu 35 40 45Ile Leu Gln Thr Val Arg
Ser His Cys Val Ser Lys Ile Thr Phe Asn 50 55 60Ser Ser Cys Leu Tyr
Ile Thr Asp Lys Ser Phe Gln Pro Lys Thr Ile65 70 75 80Asn Asn Ser
Thr Pro Leu Leu Gly Asn Phe Met Tyr Leu Thr Ser Ser 85 90 95Lys Asp
Leu Thr Lys Phe Tyr Val Gln Asp Ile Ser Asp Leu Ser Ala 100 105
110Lys Ile Ser Met Cys Ala Pro Asp Phe Asn Met Glu Phe Ser Ser Ala
115 120 125Cys Val His Gly Gln Asp Ile Val Arg Glu Ser Glu Asn Ser
Ala Val 130 135 140His Val Asp Leu Asp Phe Gly Val Val Ala Asp Leu
Leu Lys Trp Ile145 150 155 160Gly Pro His Thr Arg Val Lys Arg Asn
Val Lys Lys Ala Pro Cys Pro 165 170 175Thr Gly Thr Val Gln Ile Leu
Val His Ala Gly Pro Pro Ala Ile Lys 180 185 190Phe Ile Leu Thr Asn
Gly Ser Glu Leu Glu Phe Thr Ala Asn Asn Arg 195 200 205Val Ser Phe
His Gly Val Lys Asn Met Arg Ile Asn Val Gln Leu Lys 210 215 220Asn
Phe Tyr Gln Thr Leu Leu Asn Cys Ala Val Thr Lys Leu Pro Cys225 230
235 240Thr Leu Arg Ile Val Thr Glu His Asp Thr Leu Leu Tyr Val Ala
Ser 245 250 255Arg Asn Gly Leu Phe Ala Val Glu Asn Phe Leu Thr Glu
Glu Pro Phe 260 265 270Arg Arg Gly Asp Pro Phe Asp Lys Asn Tyr Val
Gly Asn Ser Gly Lys 275 280 285Ser Arg Gly Gly Gly Gly Gly Gly Gly
Ser Leu Ser Ser Leu Ala Asn 290 295 300Ala Gly Gly Leu His Asp Asp
Gly Pro Gly Leu Asp Asn Asp Leu Met305 310 315 320Asn Glu Pro Met
Gly Leu Gly Gly Leu Gly Gly Gly Gly Gly Gly Gly 325 330 335Gly Lys
Lys His Asp Arg Gly Gly Gly Gly Gly Ser Gly Thr Arg Lys 340 345
350Met Ser Ser Gly Gly Gly Gly Gly Asp His Asp His Gly Leu Ser Ser
355 360 365Lys Glu Lys Tyr Glu Gln His Lys Ile Thr Ser Tyr Leu Thr
Ser Lys 370 375 380Gly Gly Ser Gly Gly Gly Gly Gly Gly Gly Gly Gly
Gly Leu Asp Arg385 390 395 400Asn Ser Gly Asn Tyr Phe Asn Asp Ala
Lys Glu Glu Ser Asp Ser Glu 405 410 415Asp Ser Val Thr Phe Glu Phe
Val Pro Asn Thr Lys Lys Gln Lys Cys 420 425 430Gly51046PRTHuman
cytomegalovirus (strain Towne)p100(1)..(1046) 5Met Ser Leu Gln Phe
Ile Gly Leu Gln Arg Arg Asp Val Val Ala Leu1 5 10 15Val Asn Phe Leu
Arg His Leu Thr Gln Lys Pro Asp Val Asp Leu Glu 20 25 30Ala His Pro
Lys Ile Leu Lys Lys Cys Gly Glu Lys Arg Leu His Arg 35 40
45Arg Thr Val Leu Phe Asn Glu Leu Met Leu Trp Leu Gly Tyr Tyr Arg
50 55 60Glu Leu Arg Phe His Asn Pro Asp Leu Ser Ser Val Leu Glu Glu
Phe65 70 75 80Glu Val Arg Cys Ala Ala Val Ala Arg Arg Gly Tyr Thr
Tyr Pro Phe 85 90 95Gly Asp Arg Gly Lys Ala Arg Asp His Leu Ala Val
Leu Asp Arg Thr 100 105 110Glu Phe Asp Thr Asp Val Arg His Asp Ala
Glu Ile Val Glu Arg Ala 115 120 125Leu Val Ser Ala Val Ile Leu Ala
Lys Met Ser Val Arg Glu Thr Leu 130 135 140Val Thr Ala Ile Gly Gln
Thr Glu Pro Ile Ala Phe Val His Leu Lys145 150 155 160Asp Thr Glu
Val Gln Arg Ile Glu Glu Asn Leu Glu Gly Val Arg Arg 165 170 175Asn
Met Phe Cys Val Lys Pro Leu Asp Leu Asn Leu Asp Arg His Ala 180 185
190Asn Thr Ala Leu Val Asn Ala Val Asn Lys Leu Val Tyr Thr Gly Arg
195 200 205Leu Ile Met Asn Val Arg Arg Ser Trp Glu Glu Leu Glu Arg
Lys Cys 210 215 220Leu Ala Arg Ile Gln Glu Arg Cys Lys Leu Leu Val
Lys Glu Leu Arg225 230 235 240Met Cys Leu Ser Phe Asp Ser Asn Tyr
Cys Arg Asn Ile Leu Lys His 245 250 255Ala Val Glu Asn Gly Asp Ser
Ala Asp Thr Leu Leu Glu Leu Leu Ile 260 265 270Glu Asp Phe Asp Ile
Tyr Val Asp Ser Phe Pro Gln Ser Ala His Thr 275 280 285Phe Leu Gly
Ala Arg Pro Pro Ser Leu Glu Phe Asp Asp Asp Ala Asn 290 295 300Leu
Leu Ser Leu Gly Gly Gly Ser Ala Phe Ser Ser Val Pro Lys Lys305 310
315 320His Val Pro Thr Gln Pro Leu Asp Gly Trp Ser Trp Ile Ala Ser
Pro 325 330 335Trp Lys Gly His Lys Pro Phe Arg Phe Glu Ala His Gly
Ser Leu Ala 340 345 350Pro Ala Ala Asp Ala His Ala Ala Arg Ser Ala
Ala Val Gly Tyr Tyr 355 360 365Asp Glu Glu Glu Lys Arg Arg Glu Arg
Gln Lys Arg Val Asp Asp Glu 370 375 380Val Val Gln Arg Glu Lys Gln
Gln Leu Lys Ala Trp Glu Glu Arg Gln385 390 395 400Gln Asn Leu Gln
Gln Arg Gln Gln Gln Pro Pro Pro Pro Thr Arg Lys 405 410 415Pro Gly
Ala Ser Arg Arg Leu Phe Gly Ser Ser Ala Asp Glu Asp Asp 420 425
430Asp Asp Asp Asp Asp Glu Lys Asn Ile Phe Thr Pro Ile Lys Lys Pro
435 440 445Gly Thr Ser Gly Lys Gly Ala Ala Ser Gly Asn Gly Val Ser
Ser Ile 450 455 460Phe Ser Gly Met Leu Ser Ser Gly Ser Gln Lys Pro
Thr Ser Gly Pro465 470 475 480Leu Asn Ile Pro Gln Gln Gln Gln Arg
His Ala Ala Phe Ser Leu Val 485 490 495Ser Pro Gln Val Thr Lys Ala
Ser Pro Gly Arg Val Arg Arg Asp Ser 500 505 510Ala Trp Asp Val Arg
Pro Leu Thr Glu Thr Arg Gly Asp Leu Phe Ser 515 520 525Gly Asp Glu
Asp Ser Asp Ser Ser Asp Gly Tyr Pro Pro Asn Arg Gln 530 535 540Asp
Pro Arg Phe Thr Asp Thr Pro Val Asp Ile Thr Asp Thr Glu Thr545 550
555 560Ser Ala Lys Pro Pro Val Thr Thr Ala Tyr Lys Phe Glu Gln Pro
Thr 565 570 575Leu Thr Phe Gly Ala Gly Val Asn Val Pro Ala Gly Ala
Gly Ala Ala 580 585 590Ile Leu Thr Pro Thr Pro Val Asn Pro Ser Thr
Ala Pro Ala Pro Ala 595 600 605Pro Thr Pro Thr Phe Ala Gly Thr Gln
Thr Pro Val Asn Gly Asn Ser 610 615 620Pro Trp Ala Pro Thr Ala Pro
Leu Pro Gly Asp Met Asn Pro Ala Asn625 630 635 640Trp Pro Arg Glu
Arg Ala Trp Ala Leu Lys Asn Pro His Leu Ala Tyr 645 650 655Asn Pro
Phe Arg Met Pro Thr Thr Ser Thr Thr Ser Gln Asn Asn Val 660 665
670Ser Thr Thr Pro Arg Arg Pro Ser Thr Pro Arg Ala Ala Val Thr Gln
675 680 685Thr Ala Ser Gln Asn Ala Ala Asp Glu Val Trp Ala Leu Arg
Asp Gln 690 695 700Thr Ala Glu Ser Pro Val Glu Asp Ser Glu Glu Glu
Asp Asp Asp Ser705 710 715 720Ser Asp Thr Gly Ser Val Val Ser Leu
Gly His Thr Thr Pro Ser Ser 725 730 735Asp Tyr Asn Asp Val Ile Ser
Pro Pro Ser Gln Thr Pro Glu Gln Ser 740 745 750Thr Pro Ser Arg Ile
Arg Lys Ala Lys Leu Ser Ser Pro Met Thr Thr 755 760 765Thr Ser Thr
Ser Gln Lys Pro Val Leu Gly Lys Arg Val Ala Thr Pro 770 775 780His
Ala Ser Ala Arg Ala Gln Thr Val Thr Ser Thr Pro Val Gln Gly785 790
795 800Arg Val Glu Lys Gln Val Ser Gly Thr Pro Ser Thr Val Pro Ala
Thr 805 810 815Leu Leu Gln Pro Gln Pro Ala Ser Ser Lys Thr Thr Ser
Ser Arg Asn 820 825 830Val Thr Ser Gly Ala Arg Thr Ser Ser Ala Ser
Ala Arg Gln Pro Ser 835 840 845Ala Ser Ala Ser Val Leu Ser Pro Thr
Glu Asp Asp Val Val Ser Pro 850 855 860Val Thr Ser Pro Leu Ser Met
Leu Ser Ser Ala Ser Pro Ser Pro Ala865 870 875 880Lys Ser Ala Pro
Pro Ser Pro Val Lys Gly Arg Gly Ser Arg Val Gly 885 890 895Val Pro
Ser Leu Lys Pro Thr Leu Gly Gly Lys Ala Val Val Gly Arg 900 905
910Pro Pro Ser Val Pro Val Ser Gly Ser Ala Pro Gly Arg Leu Ser Gly
915 920 925Thr Ser Arg Ala Ala Ser Thr Thr Pro Thr Tyr Pro Ala Val
Thr Thr 930 935 940Val Tyr Pro Pro Ser Ser Thr Ala Lys Ser Ser Val
Ser Asn Ala Pro945 950 955 960Pro Val Ala Ser Pro Ser Ile Leu Lys
Pro Gly Ala Ser Ala Ala Leu 965 970 975Gln Ser Arg Arg Ser Thr Gly
Thr Ala Ala Val Gly Ser Pro Val Lys 980 985 990Ser Thr Thr Gly Met
Lys Thr Val Ala Phe Asp Leu Ser Ser Pro Gln 995 1000 1005Lys Ser
Gly Thr Gly Pro Gln Pro Gly Ser Ala Gly Met Gly Gly 1010 1015
1020Ala Lys Thr Pro Ser Asp Ala Val Gln Asn Ile Leu Gln Lys Ile
1025 1030 1035Glu Lys Ile Lys Asn Thr Glu Glu 1040 10456449PRTHomo
sapiensWT-1(1)..(449) 6Met Gly Ser Asp Val Arg Asp Leu Asn Ala Leu
Leu Pro Ala Val Pro1 5 10 15Ser Leu Gly Gly Gly Gly Gly Cys Ala Leu
Pro Val Ser Gly Ala Ala 20 25 30Gln Trp Ala Pro Val Leu Asp Phe Ala
Pro Pro Gly Ala Ser Ala Tyr 35 40 45Gly Ser Leu Gly Gly Pro Ala Pro
Pro Pro Ala Pro Pro Pro Pro Pro 50 55 60Pro Pro Pro Pro His Ser Phe
Ile Lys Gln Glu Pro Ser Trp Gly Gly65 70 75 80Ala Glu Pro His Glu
Glu Gln Cys Leu Ser Ala Phe Thr Val His Phe 85 90 95Ser Gly Gln Phe
Thr Gly Thr Ala Gly Ala Cys Arg Tyr Gly Pro Phe 100 105 110Gly Pro
Pro Pro Pro Ser Gln Ala Ser Ser Gly Gln Ala Arg Met Phe 115 120
125Pro Asn Ala Pro Tyr Leu Pro Ser Cys Leu Glu Ser Gln Pro Ala Ile
130 135 140Arg Asn Gln Gly Tyr Ser Thr Val Thr Phe Asp Gly Thr Pro
Ser Tyr145 150 155 160Gly His Thr Pro Ser His His Ala Ala Gln Phe
Pro Asn His Ser Phe 165 170 175Lys His Glu Asp Pro Met Gly Gln Gln
Gly Ser Leu Gly Glu Gln Gln 180 185 190Tyr Ser Val Pro Pro Pro Val
Tyr Gly Cys His Thr Pro Thr Asp Ser 195 200 205Cys Thr Gly Ser Gln
Ala Leu Leu Leu Arg Thr Pro Tyr Ser Ser Asp 210 215 220Asn Leu Tyr
Gln Met Thr Ser Gln Leu Glu Cys Met Thr Trp Asn Gln225 230 235
240Met Asn Leu Gly Ala Thr Leu Lys Gly Val Ala Ala Gly Ser Ser Ser
245 250 255Ser Val Lys Trp Thr Glu Gly Gln Ser Asn His Ser Thr Gly
Tyr Glu 260 265 270Ser Asp Asn His Thr Thr Pro Ile Leu Cys Gly Ala
Gln Tyr Arg Ile 275 280 285His Thr His Gly Val Phe Arg Gly Ile Gln
Asp Val Arg Arg Val Pro 290 295 300Gly Val Ala Pro Thr Leu Val Arg
Ser Ala Ser Glu Thr Ser Glu Lys305 310 315 320Arg Pro Phe Met Cys
Ala Tyr Pro Gly Cys Asn Lys Arg Tyr Phe Lys 325 330 335Leu Ser His
Leu Gln Met His Ser Arg Lys His Thr Gly Glu Lys Pro 340 345 350Tyr
Gln Cys Asp Phe Lys Asp Cys Glu Arg Arg Phe Ser Arg Ser Asp 355 360
365Gln Leu Lys Arg His Gln Arg Arg His Thr Gly Val Lys Pro Phe Gln
370 375 380Cys Lys Thr Cys Gln Arg Lys Phe Ser Arg Ser Asp His Leu
Lys Thr385 390 395 400His Thr Arg Thr His Thr Gly Lys Thr Ser Glu
Lys Pro Phe Ser Cys 405 410 415Arg Trp Pro Ser Cys Gln Lys Lys Phe
Ala Arg Ser Asp Glu Leu Val 420 425 430Arg His His Asn Met His Gln
Arg Asn Met Thr Lys Leu Gln Leu Ala 435 440 445Leu 7191PRTHepatitis
C virusHCV_core_protein(1)..(191) 7Met Ser Thr Asn Pro Lys Pro Gln
Arg Lys Thr Lys Arg Asn Thr Asn1 5 10 15Arg Arg Pro Gln Asp Val Lys
Phe Pro Gly Gly Gly Gln Ile Val Gly 20 25 30Gly Val Tyr Leu Leu Pro
Arg Arg Gly Pro Arg Leu Gly Val Arg Ala 35 40 45Thr Arg Lys Thr Ser
Glu Arg Ser Gln Pro Arg Gly Arg Arg Gln Pro 50 55 60Ile Pro Lys Ala
Arg Arg Pro Glu Gly Arg Ala Trp Ala Gln Pro Gly65 70 75 80Tyr Pro
Trp Pro Leu Tyr Gly Asn Glu Gly Met Gly Trp Ala Gly Trp 85 90 95Leu
Leu Ser Pro Arg Gly Ser Arg Pro Ser Trp Gly Pro Thr Asp Pro 100 105
110Arg Arg Arg Ser Arg Asn Leu Gly Lys Val Ile Asp Thr Leu Thr Cys
115 120 125Gly Phe Ala Asp Leu Met Gly Tyr Ile Pro Leu Val Gly Ala
Pro Leu 130 135 140Gly Gly Ala Ala Arg Ala Leu Ala His Gly Val Arg
Val Leu Glu Asp145 150 155 160Gly Val Asn Tyr Ala Thr Gly Asn Leu
Pro Gly Cys Ser Phe Ser Ile 165 170 175Phe Leu Leu Ala Leu Leu Ser
Cys Leu Thr Ile Pro Ala Ser Ala 180 185 190
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