U.S. patent application number 13/156661 was filed with the patent office on 2011-12-15 for dimeric iap antagonists.
This patent application is currently assigned to Tetralogic Pharmaceuticals Corporation. Invention is credited to Stephen M. Condon, Yijun Deng, Matthew G. LaPorte, Susan R. Rippin.
Application Number | 20110305777 13/156661 |
Document ID | / |
Family ID | 38904713 |
Filed Date | 2011-12-15 |
United States Patent
Application |
20110305777 |
Kind Code |
A1 |
Condon; Stephen M. ; et
al. |
December 15, 2011 |
DIMERIC IAP ANTAGONISTS
Abstract
Smac mimetics that inhibit IAPs.
Inventors: |
Condon; Stephen M.;
(Glenmoore, PA) ; LaPorte; Matthew G.;
(Honeybrook, PA) ; Deng; Yijun; (Dresher, PA)
; Rippin; Susan R.; (Wilmington, DE) |
Assignee: |
Tetralogic Pharmaceuticals
Corporation
Malvern
PA
|
Family ID: |
38904713 |
Appl. No.: |
13/156661 |
Filed: |
June 9, 2011 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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11782360 |
Jul 24, 2007 |
7985735 |
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13156661 |
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60820156 |
Jul 24, 2006 |
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Current U.S.
Class: |
424/649 ;
435/375; 514/18.9; 514/19.3; 514/21.9; 530/323 |
Current CPC
Class: |
C07K 5/06034 20130101;
Y02A 50/414 20180101; A61P 43/00 20180101; C07K 5/06191 20130101;
A61K 38/00 20130101; A61P 35/00 20180101; Y02A 50/411 20180101;
C07K 5/06026 20130101; Y02A 50/30 20180101 |
Class at
Publication: |
424/649 ;
514/18.9; 530/323; 435/375; 514/19.3; 514/21.9 |
International
Class: |
A61K 38/07 20060101
A61K038/07; A61K 33/24 20060101 A61K033/24; A61P 35/00 20060101
A61P035/00; C07K 7/02 20060101 C07K007/02; C12N 5/09 20100101
C12N005/09 |
Claims
1. A compound of formula (I): ##STR00049## Wherein Z.sub.1a,
Z.sub.2a, Z.sub.1b, and Z.sub.2b are independently CH or N;
R.sub.1a and R.sub.1b are independently H or optionally substituted
hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
R.sub.2a, R.sub.2a', R.sub.2b and R.sub.2b' are independently H or
optionally substituted alkyl, cycloalkyl, or heterocycloalkyl; or
when R.sub.2a' is H then R.sub.2a and R.sub.1a can together form an
aziridine or azetidine ring and when R.sub.2b' is H then R.sub.2b
and R.sub.1b can together form an aziridine or azetidine ring;
R.sub.3a, R.sub.3b, R.sub.4a and R.sub.4b are independently H or
optionally substituted alkyl, cycloalkyl, heterocycloalkyl, aryl,
or heteroaryl; or, R.sub.4a and R.sub.3a, or R.sub.4b and R.sub.3b,
or both, are carbon atoms linked by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where one to
three carbon atoms can be replaced by N, O, S(O).sub.n, or C.dbd.O
R.sub.5a, R.sub.6a, R.sub.5b, and R.sub.6b are independently H or
optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl; or R.sub.5a and R.sub.6a or
R.sub.5b and R.sub.6b, or both, are carbon atoms linked by an
optionally-substituted alkylene or alkenylene group of 1 to 8
carbon atoms where one to three carbon atoms can be replaced by N,
O, S(O).sub.n, or C.dbd.O; R.sub.7a, R.sub.7b, R.sub.8a, R.sub.8b
are independently H or optionally substituted hydroxyl, alkyl,
cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; or R.sub.7a and
R.sub.8a, or R.sub.7b and R.sub.8b, or both, can be linked by an
optionally-substituted alkylene or alkenylene group of 3 to 8
carbon atoms where one to three carbon atoms can be replaced by N,
O, S(O).sub.n, or C.dbd.O; each n can be the same or different and
is 0, 1, or 2; Xa is --O--, --N(La--R.sub.10a)-, --S--,
optionally-substituted --C(La--R.sub.10a)=CH--, --C(O)--O--,
--C(O)--N(La--R.sub.10a)-, --N.dbd.C(La--R.sub.10a)-; Xb is --O--,
--N(Lb-R.sub.10b)-, --S--, optionally-substituted
--C(Lb-R.sub.10b)=CH--, --C(O)--O--, --C(O)--N(Lb-R.sub.10b)-,
--N.dbd.C(Lb-R.sub.10b)-; La and Lb are independently a covalent
bond or C.sub.1-C.sub.4 alkylene; Wa, Wb, R.sub.10a, and R.sub.10b
are defined in paragraphs (a) through (e), which follow: (a) when
Wa and Wb together are a Linker, then Xa or Xb are independently
--O--, --S--, or --C(O)--O--; R.sub.10a and R.sub.10b,
respectively, are absent; or (b) when Wa and Wb together are a
Linker; Xa is --N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--,
--N.dbd.C(Lb-R.sub.10b)-, or --C(O)--N(Lb-R.sub.10b)-; R.sub.10a
and R.sub.10b are independently H or optionally substituted
hydroxyl, alkyl, alkenyl, alkynyl, cycloalkyl, heterocycloalkyl,
aryl, or heteroaryl; or (c) when Wa and Wb together are a Linker;
Xa is --N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--,
--N.dbd.C(Lb-R.sub.10b)-, or --C(O)--N(Lb-R.sub.10b)-; R.sub.10a
and R.sub.10b together are a Linker; or (d) when Wa and Wb are not
covalently bound, Wa and Wb are independently H, Cl, Br, F, CN,
COOH, or optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl; Xa is --N(La--R.sub.10a)-,
--C(La--R.sub.10a)=CH--, --N.dbd.C(La--R.sub.10a)-, or
--C(O)--N(La--R.sub.10a)-; Xb is --N(Lb-R.sub.10b)-,
--C(Lb-R.sub.10b)=CH--, --N.dbd.C(Lb-R.sub.10b)-, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b together are a
Linker; or (e) when Wa and Wb are not covalently bound, Wa is H,
Cl, Br, F, CN, COOH, or optionally substituted hydroxyl, alkyl,
cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; Xa is
--N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--O--, --N(Lb-R.sub.10b)-, --S--, --C(Lb-R.sub.10b)=CH--,
--C(O)--O--, --N.dbd.C(Lb-R.sub.10b)-, --C(O)--N(Lb-R.sub.10b)-;
and R.sub.10b is absent or is H or optionally substituted hydroxyl,
alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; and Wb
and LaR10a together are a Linker; or a pharmaceutically acceptable
salt thereof; provided that when Z.sub.1a is N and Z.sub.2a is CH,
and Z.sub.1b is N and Z.sub.2b is CH, then at least one of the
following is true: (i) R.sub.5a and R.sub.6a are not both carbon
atoms linked by a single covalent bond; (ii) R.sub.5a and R.sub.6a
are both carbon atoms linked by a single covalent bond and R.sub.5a
is disubstituted; (iii) R.sub.5a and R.sub.6a are both carbon atoms
linked by a single covalent bond and R.sub.6a is mono- or
disubstituted; (iv) R.sub.5a and R.sub.6a are both carbon atoms
linked by a single covalent bond and R.sub.3a and R.sub.4a are both
carbon atoms linked by a covalent bond or by an
optionally-substituted alkylene or alkenylene group of 1 to 8
carbon atoms where one to three carbon atoms can be replaced by N,
O, S(O).sub.n, or C.dbd.O. (v) R.sub.5a and R.sub.6a are both
carbon atoms linked by a single covalent bond and neither R.sub.2a
nor R.sub.2a' are H.
2. The compound of claim 1, wherein R.sub.3a, R.sub.4a, R.sub.3b,
and R.sub.4b are independently H, methyl, ethyl, isopropyl,
isobutyl, sec-butyl, tert-butyl, cycloalkyl, heterocycloalkyl,
aryl, or heteroaryl, optionally-substituted with hydroxyl,
mercapto, sulfonyl, alkylsulfonyl, halogen, pseudohalogen, amino,
carboxyl, alkyl, haloalky, pseudohaloalkyl, alkoxy, or
alkylthio.
3. The compound of claim 1 wherein R.sub.2a and R.sub.2b are
independently --H, methyl, fluoromethyl, difluoromethyl, ethyl,
fluoroethyl, hydroxyethyl, or cycloalkyl.
4. The compound of claim 1 wherein R.sub.1a and R.sub.1b are
independently H, methyl, allyl, propargyl, ethyl, hydroxyethyl,
cycloalkyl, or cycloalkylmethyl.
5. The compound of claim 1 wherein R.sub.3a, R.sub.4a, R.sub.3b,
and R.sub.4b are independently optionally substituted lower alkyl
or C.sub.3-C.sub.8 cycloalkyl wherein the optional substituents are
hydroxy or lower alkoxy.
6. The compound of claim 1 wherein Wa and Wb together are a
covalent bond or optionally substituted alkylene, cycloalkyl, or
aryl, of 2 to 20 carbon atoms where one or more carbon atoms can be
replaced with N, O, or S(O).sub.n; and Xa and Xb are independently
--O--, --S--, or --C(O)--O--.
7. The compound of claim 1 wherein Wa and Wb together are a
covalent bond or optionally substituted alkylene, cycloalkyl, or
aryl, of 2 to 20 carbon atoms where one or more carbon atoms can be
replaced with N, O, or S(O).sub.n; Xa is --N(La--R.sub.10a)-,
--C(La--R.sub.10a)=CH--, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b are independently
H or optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl.
8. The compound of claim 1 wherein Wa and Wb together are a
covalent bond or optionally substituted alkylene, cycloalkyl, or
aryl, of 2 to 20 carbon atoms where one or more carbon atoms can be
replaced with N, O, or S(O).sub.n; Xa is --N(La--R.sub.10a)-,
--C(La--R.sub.10a)=CH--, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-,--C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b together are an
optionally-substituted alkylene, cycloalkyl, or aryl of 2 to 20
carbon atoms where one or more carbon atoms can be replaced with N,
O, or S(O).sub.n.
9. The compound of claim 1 wherein Wa and Wb are not covalently
bound, and Wa and Wb are independently H, Cl, Br, F, CN, COOH, or
optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl; Xa is --N(La--R.sub.10a)-,
--C(La--R.sub.10a)=CH--, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-,--C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b together are an
optionally-substituted alkylene, cycloalkyl, or aryl of 2 to 20
carbon atoms where one or more carbon atoms can be replaced with N,
O, or S(O).sub.n.
10. The compound of claim 1 wherein Wa and Wb are not covalently
bound, Wa is H, Cl, Br, F, CN, COOH, or optionally substituted
hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
Xa is --N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--, or
--C(O)--N(La--R.sub.10a)-; Xb is --O--, --N(Lb-R.sub.10b)-,
--S--,--C(Lb-R.sub.10b)=CH--, --C(O)--O--,
--C(O)--N(Lb-R.sub.10b)-; and R.sub.10b is H or
optionally-substituted alkyl; and Wb and R.sub.10a together are a
covalent bond or optionally substituted alkylene, cycloalkyl, or
aryl, of 2 to 20 carbon atoms where one or more carbon atoms can be
replaced with N, O, or S(O).sub.n.
11. The compound of claim 1 wherein Wa and Wb are not covalently
bound, Wb is H, Cl, Br, F, CN, COOH, or optionally substituted
hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
Xb is --N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; Xa is --O--, --N(La--R.sub.10a)-, --S--,
--C(La--R.sub.10a)=CH--, --C(O)--O--, --C(O)--N(La--R.sub.10a)-;
and R.sub.10a is H or optionally-substituted alkyl; and Wa and
R.sub.10b together are a covalent bond or optionally substituted
alkylene, cycloalkyl, or aryl, of 2 to 20 carbon atoms where one or
more carbon atoms can be replaced with N, O, or S(O).sub.n.
12. The compound of claim 1 wherein Z.sub.1a and Z.sub.1b are both
N and Z.sub.2a and Z.sub.2b are both C and wherein R.sub.5a and
R.sub.6a, and R.sub.5b and R.sub.6b, are each carbon and are linked
by a covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three carbon
atoms can be replaced by N, O, S(O).sub.n, or C.dbd.O.
13. The compound of 1 wherein Z.sub.1a and Z.sub.1b are both N and
Z.sub.2a and Z.sub.2b are both C and wherein R.sub.3a and R.sub.4a,
and R.sub.3b and R.sub.4b, are each carbon and are linked by a
covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three carbon
atoms can be replaced by N, O, S(O).sub.n, or C.dbd.O.
14. The compound of claim 1 wherein R.sub.10a and R.sub.10b are not
heterocycloalkyl or heteroaryl.
15. The compound of claim 1 having formula (II): ##STR00050##
wherein Xa is --N--, --C.dbd.C(R.sub.16a)-, --N.dbd.C-- or
--C(O)N--; Xb is --N--, --C.dbd.C(R.sub.16b)-, --N.dbd.C-- or
--C(O)N--; La and Lb are independently a covalent bond or
C.sub.1-C.sub.4 alkylene; Ya is --C--, --N--, or --N.sup.+--; such
that, When Ya is --C-- then R.sub.10a, R.sub.11a, R.sub.12a,
R.sub.13a, R.sub.14a, R.sub.15a, and R.sub.16a are, independently,
--H, halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkoxyalkyl,
sulfonate, aryloxy, heteroaryloxy, acyl, acetyl, carboxylate,
sulfonate, sulfone, imine, or oxime; provided that when Xa is --N--
or --C(O)--N--, -L.sub.1-R.sub.10a is bound to the --N-- atom; and,
when Xa is --C.dbd.C(R.sub.16a)- or --N.dbd.C--, -L.sub.1-R.sub.10a
is bound to the --C.dbd. atom; and When Ya is --N-- or --N.sup.+--,
then R11a is absent or --O--, and R.sub.10a, R.sub.11a, R.sub.13a,
R.sub.14a, R.sub.15a, and R.sub.16a are, independently, --H,
halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkoxyalkyl,
sulfonate, aryloxy, heteroaryloxy, acyl, acetyl, carboxylate,
sulfonate, sulfone, imine, or oxime; provided that when X is --N--
or --C(O)--N--, -L.sub.1-R.sub.10a is bound to the --N-- atom; and,
when X is --C.dbd.C(R.sub.16a)- or --N.dbd.C--, -L.sub.1-R.sub.10a
is bound to the --C.dbd. atom; Yb is --C--, --N--, or --N.sup.+--;
such that, When Yb is --C-- then R.sub.10b, R.sub.11b, R.sub.12b,
R.sub.13b, R.sub.14b, R.sub.15b, and R.sub.16b are, independently,
--H, halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkoxyalkyl,
sulfonate, aryloxy, heteroaryloxy, acyl, acetyl, carboxylate,
sulfonate, sulfone, imine, or oxime; provided that when Xb is --N--
or --C(O)--N--, -L.sub.1-R.sub.10b is bound to the --N-- atom; and,
when Xb is --C.dbd.C(R.sub.16b)- or --N.dbd.C--, -L.sub.1-R.sub.10b
is bound to the --C.dbd. atom; and When Yb is --N-- or --N.sup.+--,
then R.sub.11b is absent or --O--, and R.sub.10b, R.sub.12b,
R.sub.13b, R.sub.14b, R.sub.15b, and R.sub.16b are, independently,
--H, halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkoxyalkyl,
sulfonate, aryloxy, heteroaryloxy, acyl, acetyl, carboxylate,
sulfonate, sulfone, imine, or oxime; provided that when Xb is --N--
or --C(O)--N--, -L.sub.1-R.sub.10b is bound to the --N-- atom; and,
when Xb is --C.dbd.C(R.sub.16b)- or --N.dbd.C--, -L.sub.1-R.sub.10b
is bound to the --C.dbd. atom.
16. The compound of claim 15 wherein Z.sub.1a and Z.sub.1b are both
N and Z.sub.2a and Z.sub.2b are both C and wherein (i) R.sub.5a and
R.sub.6a, and R.sub.5b and R.sub.6b, are each carbon and are linked
by a covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three carbon
atoms can be replaced by N, O, S(O).sub.n, or C.dbd.O or (ii)
R.sub.3a and R.sub.4a, and R.sub.3b and R.sub.4b, are each carbon
and are linked by a covalent bond or by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where one to
three carbon atoms can be replaced by N, O, S(O).sub.n, or C.dbd.O
or (iii) both (i) and (ii) are true.
17. The compound of claim 15 wherein R.sub.3a and R.sub.4a, and
R.sub.3b and R.sub.4b, are carbon atoms and are linked by a
covalent bond or by an optionally-substituted alkylene or
alkenylene group of 1 to 3 carbon atoms of which one or more can be
replaced by N, O, S(O).sub.n, or C.dbd.O
18. The compound of claim 15 wherein R.sub.4a and R.sub.3a or
R.sub.4b and R.sub.3b, or both, are linked by an alkylene or
alkenylene group of 1 to 3 atoms; R.sub.2a and R.sub.2b are
independently selected from methyl, fluoromethyl, difluoromethyl,
ethyl, fluoroethyl, and cycloalkyl; Wa and Wb together are a
covalent bond or optionally substituted alkylene, cycloalkyl, or
aryl, of 2 to 20 carbon atoms where one or more carbon atoms can be
replaced with N, O, or S(O).sub.n; and Xa and Xb are independently
--O--, --S--, or --C(O)--O--; or Wa and Wb together are a covalent
bond or optionally substituted alkylene, cycloalkyl, or aryl, of 2
to 20 carbon atoms where one or more carbon atoms can be replaced
with N, O, or S(O).sub.n; Xa is --N(La--R.sub.10a)-,
--C(La--R.sub.10a)=CH--, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b are independently
H or optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or, heteroaryl.
19. The compound of claim 15 wherein R.sub.10a and R.sub.10b are
not optionally substituted 5-, 6-, or 7-membered heterocycloalkyl
or heteroaryl.
20. The compound of claim 1 having formula (IV), or a
pharmaceutically acceptable salt thereof: ##STR00051## wherein
--La--R.sub.10a-Wb- is a covalent bond.
21. The compound of claim 1 that is selected from compounds A
through N, as follows: ##STR00052## TABLE-US-00003 R13a/ R12a/
R11a/ Compound R1a R2a R3a R17a R17b R3b R2b R1b R13b R12b R11b A
Me S--Me S--(2R-- S--OH S--OH S--(2R-- S--Me Me H F H MeCHOMe)
MeCHOMe) B Me S--CH.sub.2OH S--(2R-- S--OH S--OH S--(2R--
S--CH.sub.2OH Me H F H MeCHOMe) MeCHOMe) C Me S--Me S--tBu S--OH
S--OH S--tBu S--Me Me H F H D Me S--Et S--tBu S--OH S--OH S--tBu
S--Et Me H F H E Et S--Me S--(2R-- S--OH S--OH S--(2R-- S--Me Et H
F H MeCHOMe) MeCHOMe) F Me S--Et S--(2R-- S--OH S--OH S--(2R--
S--Et Me H F H MeCHOMe) MeCHOMe) G Me S--Me S--(2R-- S--OMe S--OMe
S--(2R-- S--Me Me H F H MeCHOMe) MeCHOMe) H Me S--Et S--(2R--
S--OMe S--OMe S--(2R-- S--Et Me H F H MeCHOMe) MeCHOMe) I Me S--Me
S--tBu S--OMe S--OMe S--tBu S--Me Me H F H J Me S--Et S--tBu S--OMe
S--OMe S--tBu S--Et Me H F H K Et S--Me S--(2R-- S--OMe S--OMe
S--(2R-- S--Me Et H F H MeCHOMe) MeCHOMe) L Et S--Me S--tBu S--OMe
S--OMe S--tBu S--Me Et H F H M Me S--Me S--(2R-- S--Me S--Me
S--(2R-- S--Me Me H F H MeCHOMe) MeCHOMe)
##STR00053## TABLE-US-00004 R1a/ R2a/ R3a/ R17a/ R12a/ Compound R1b
R2b R3b R17b R12b N Me Me R-- (S)--OH 6-F (Me)CHOMe
22. The compound of claim 1 having the formula ##STR00054## wherein
R.sub.1a, R.sub.1b, R.sub.2a, R.sub.2b, R.sub.3a, and R.sub.3b are
independently lower alkyl, lower alkoxy, lower alkanol, or
C.sub.3-C.sub.6 cycloalkyl; R.sub.17a and R.sub.17b are
independently --OH, lower alkoxy or lower alkyl; R.sub.11a,
R.sub.11b, R.sub.12a, R.sub.12b, R.sub.13a, R.sub.13b, R.sub.14a,
and R.sub.14b are independently --H or halogen.
23. The compound of claim 1 having the formula ##STR00055## wherein
R.sub.1a, R.sub.1b, R.sub.2a, R.sub.2b, R.sub.3a, and R.sub.3b are
independently lower alkyl, lower alkoxy, lower alkanol, or
C.sub.3-C.sub.6 cycloalkyl; R.sub.17a and R.sub.17b are
independently --OH, lower alkoxy or lower alkyl; R.sub.12a and
R.sub.12b are independently --H or halogen.
24. A method for inducing apoptosis in a cell comprising contacting
the cell with a compound of claim 1 in an amount sufficient to
induce apoptosis in the cell.
25. The method of claim 24, wherein said cell is neoplastic.
26. The method of claim 24, wherein said cell overexpresses an
inhibitor of caspase.
27. The method of claim 24, wherein the inhibitor inhibits
activation or activity of one or more of a caspase selected from
caspase-3, caspase-7 and caspase-9.
28. A method of stimulating apoptosis in a cell comprising
contacting the cell with a compound of claim 1 in an amount
sufficient to stimulate apoptosis in the cell.
29. The method of claim 28, wherein said cells are cancer
cells.
30. A method of enhancing apoptosis of pathogenic cells in vivo in
an individual comprising administering to the individual a
therapeutically effective amount of a compound of claim 1.
31. The method of claim 30 further comprising administering a
second therapy selected from radiation, chemotherapy,
immunotherapy, photodynamic therapy and combinations thereof.
32. A method of treating a disease associated with the
overexpression of IAP in an individual comprising administering to
said individual an effective amount of a compound of claim 1.
33. A method of treating cancer comprising administering a
therapeutically effective amount of a compound of claim 1.
34. A pharmaceutical composition comprising: a compound selected
from a compound of claim 1 and a pharmaceutically acceptable
excipient.
35. The composition of claim 34 further comprising a second
chemotherapeutic agent.
36. The composition of claim 34, wherein said second
chemotherapeutic agent is selected from alkylating agents, plant
alkaloids, antitumor antibiotics, antimetabolites, topoisomerase
inhibitors and combinations thereof.
37. The composition of claim 36, wherein said chemotherapeutic
agent is selected from altretamine, busulfan, carboplatin,
carmustine, chlorambucil, cisplatin, cyclophosphomide, dacarbazine,
hexamethylmelamine, ifosfamide, lomustine, melphalan,
mechlorethamine, oxaliplatin, procarbazine, streptozocin,
temozolomide, thiotepa, uramustine, docetaxel, etoposide,
irinotecan, paclitaxel, tenisopide, topotecan, vincristine,
vinblastine, vindesine, vinorelbine, bleomycin, dactinomycin,
daunorubicin, epirubicin, hydroxyurea, idarubicin, mitomycin,
mitoxantrone, plicamycin, azathioprine, capecitabine, cladribine,
cytarabine, fludarabine, fluorouracil, floxuridine, gemcitabine,
mercaptopurine, methotrexate, nelarabine, pemetrexed, pentostatin,
thioguanine, camptothecan, irinotecan, topotecan, BNP 1350, SN 38,
9-amino-camptothecan, lurtotecan, gimatecan, diflomotecan, an
anthracycline, anthraquinone, podophyllotoxin, doxorubicin,
epirubicin, idarubicin, nemorubicin, mitoxantrone, loxoxantrone,
etoposide, teniposide and combinations thereof.
Description
[0001] This application claims priority to and benefit of U.S.
Provisional Application No. 60/820,156 entitled "Dimeric IAP
Inhibitors" filed on Jul. 24, 2006; and U.S. application Ser. No.
11/782,360, filed Jul. 23, 2007, the entire contents of which is
hereby incorporated by reference in its entirety.
[0002] Apoptosis (programmed cell death) plays a central role in
the development and homeostasis of all multi-cellular organisms.
Apoptosis can be initiated within a cell from an external factor
such as a chemokine (an extrinsic pathway) or via an intracellular
event such a DNA damage (an intrinsic pathway). Alterations in
apoptotic pathways have been implicated in many types of human
pathologies, including developmental disorders, cancer, autoimmune
diseases, as well as neuro-degenerative disorders. One mode of
action of chemotherapeutic drugs is cell death via apoptosis.
[0003] Apoptosis is conserved across species and executed primarily
by activated caspases, a family of cysteine proteases with
aspartate specificity in their substrates. These cysteine
containing aspartate specific proteases ("caspases") are produced
in cells as catalytically inactive zymogens and are proteolytically
processed to become active proteases during apoptosis. Once
activated, effector caspases are responsible for proteolytic
cleavage of a broad spectrum of cellular targets that ultimately
lead to cell death. In normal surviving cells that have not
received an apoptotic stimulus, most caspases remain inactive. If
caspases are aberrantly activated, their proteolytic activity can
be inhibited by a family of evolutionarily conserved proteins
called IAPs (inhibitors of apoptosis proteins).
[0004] The IAP family of proteins suppresses apoptosis by
preventing the activation of procaspases and inhibiting the
enzymatic activity of mature caspases. Several distinct mammalian
IAPs including XIAP, c-IAP1, c-IAP2, ML-IAP, NAIP (neuronal
apoptosis inhibiting protein), Bruce, and survivin, have been
identified, and they all exhibit anti-apoptotic activity in cell
culture. IAPs were originally discovered in baculovirus by their
functional ability to substitute for P35 protein, an anti-apoptotic
gene. IAPs have been described in organisms ranging from Drosophila
to human, and are known to be overexpressed in many human cancers.
Generally speaking, IAPs comprise one to three Baculovirus IAP
repeat (BIR) domains, and most of them also possess a
carboxyl-terminal RING finger motif. The BIR domain itself is a
zinc binding domain of about 70 residues comprising 4 alpha-helices
and 3 beta strands, with cysteine and histidine residues that
coordinate the zinc ion. It is the BIR domain that is believed to
cause the anti-apoptotic effect by inhibiting the caspases and thus
inhibiting apoptosis. XIAP is expressed ubiquitously in most adult
and fetal tissues. Overexpression of XIAP in tumor cells has been
demonstrated to confer protection against a variety of
pro-apoptotic stimuli and promotes resistance to chemotherapy.
Consistent with this, a strong correlation between XIAP protein
levels and survival has been demonstrated for patients with acute
myelogenous leukemia. Down-regulation of XIAP expression by
antisense oligonucleotides has been shown to sensitize tumor cells
to death induced by a wide range of pro-apoptotic agents, both in
vitro and in vivo. Smac/DIABLO-derived peptides have also been
demonstrated to sensitize a number of different tumor cell lines to
apoptosis induced by a variety of pro-apoptotic drugs.
[0005] In normal cells signaled to undergo apoptosis, however, the
IAP-mediated inhibitory effect must be removed, a process at least
in part performed by a mitochondrial protein named Smac (second
mitochondrial activator of caspases). Smac (or, DIABLO), is
synthesized as a precursor molecule of 239 amino acids; the
N-terminal 55 residues serve as the mitochondria targeting sequence
that is removed after import. The mature form of Smac contains 184
amino acids and behaves as an oligomer in solution. Smac and
various fragments thereof have been proposed for use as targets for
identification of therapeutic agents.
[0006] Smac is synthesized in the cytoplasm with an N-terminal
mitochondrial targeting sequence that is proteolytically removed
during maturation to the mature polypeptide and is then targeted to
the inter-membrane space of mitochondria. At the time of apoptosis
induction, Smac is released from mitochondria into the cytosol,
together with cytochrome c, where it binds to IAPs, and enables
caspase activation, therein eliminating the inhibitory effect of
IAPs on apoptosis. Whereas cytochrome c induces multimerization of
Apaf-1 to activate procaspase-9 and -3, Smac eliminates the
inhibitory effect of multiple IAPs. Smac interacts with essentially
all IAPs that have been examined to date including XIAP, c-IAP1,
c-IAP2, ML-IAP, and survivin. Thus, Smac appears to be a master
regulator of apoptosis in mammals.
[0007] It has been shown that Smac promotes not only the
proteolytic activation of procaspases, but also the enzymatic
activity of mature caspase, both of which depend upon its ability
to interact physically with IAPs. X-ray crystallography has shown
that the first four amino acids (AVPI) of mature Smac bind to a
portion of IAPs. This N-terminal sequence is essential for binding
IAPs and blocking their anti-apoptotic effects.
[0008] Current trends in cancer drug design focus on selective
targeting to activate the apoptotic signaling pathways within
tumors while sparing normal cells. The tumor specific properties of
specific chemotherapeutic agents, such as TRAIL have been reported.
The tumor necrosis factor-related apoptosis-inducing ligand (TRAIL)
is one of several members of the tumor necrosis factor (TNF)
superfamily that induce apoptosis through the engagement of death
receptors. TRAIL interacts with an unusually complex receptor
system, which in humans comprises two death receptors and three
decoy receptors. TRAIL has been used as an anti-cancer agent alone
and in combination with other agents including ionizing radiation.
TRAIL can initiate apoptosis in cells that overexpress the survival
factors Bcl-2 and Bcl-XL, and may represent a treatment strategy
for tumors that have acquired resistance to chemotherapeutic drugs.
TRAIL binds its cognate receptors and activates the caspase cascade
utilizing adapter molecules such as TRADD. TRAIL signaling can be
inhibited by overexpression of cIAP-1 or 2, indicating an important
role for these proteins in the signaling pathway. Currently, five
TRAIL receptors have been identified. Two receptors TRAIL-R1 (DR4)
and TRAIL-R2 (DR5) mediate apoptotic signaling, and three
non-functional receptors, DcR1, DcR2, and osteoprotegerin (OPG) may
act as decoy receptors. Agents that increase expression of DR4 and
DR5 may exhibit synergistic anti-tumor activity when combined with
TRAIL.
[0009] The basic biology of how IAP antagonists work suggests that
they may complement or synergize other
chemotherapeutic/anti-neoplastic agents and/or radiation.
Chemotherapeutic/anti-neoplastic agents and radiation would be
expected to induce apoptosis as a result of DNA damage and/or the
disruption of cellular metabolism.
[0010] Inhibition of the ability of a cancer cell to replicate
and/or repair DNA damage will enhance nuclear DNA fragmentation and
thus will promote the cell to enter the apoptotic pathway.
Topoisomerases, a class of enzymes that reduce supercoiling in DNA
by breaking and rejoining one or both strands of the DNA molecule,
are vital to cellular processes, such as DNA replication and
repair. Inhibition of this class of enzymes impairs the cells
ability to replicate as well as to repair damaged DNA and activates
the intrinsic apoptotic pathway.
[0011] The main pathways leading from topoisomerase-mediated DNA
damage to cell death involve activation of caspases in the
cytoplasm by proapoptotic molecules released from mitochondria,
such as Smac. The engagement of these apoptotic effector pathways
is tightly controlled by upstream regulatory pathways that respond
to DNA lesions-induced by topoisomerase inhibitors in cells
undergoing apoptosis. Initiation of cellular responses to DNA
lesions-induced by topoisomerase inhibitors is ensured by the
protein kinases which bind to DNA breaks. These kinases
(non-limiting examples of which include Akt, JNK and P38) commonly
called "DNA sensors" mediate DNA repair, cell cycle arrest and/or
apoptosis by phosphorylating a large number of substrates,
including several downstream kinases.
[0012] Platinum chemotherapy drugs belong to a general group of DNA
modifying agents. DNA modifying agents may be any highly reactive
chemical compound that bonds with various nucleophilic groups in
nucleic acids and proteins and cause mutagenic, carcinogenic, or
cytotoxic effects. DNA modifying agents work by different
mechanisms, disruption of DNA function and cell death; DNA
damage/the formation of cross-bridges or bonds between atoms in the
DNA; and induction of mispairing of the nucleotides leading to
mutations, to achieve the same end result. Three non-limiting
examples of a platinum containing DNA modifying agents are
cisplatin, carboplatin and oxaliplatin.
[0013] Cisplatin is believed to kill cancer cells by binding to DNA
and interfering with its repair mechanism, eventually leading to
cell death. Carboplatin and oxaliplatin are cisplatin derivatives
that share the same mechanism of action. Highly reactive platinum
complexes are formed intracellularly and inhibit DNA synthesis by
covalently binding DNA molecules to form intrastrand and
interstrand DNA crosslinks.
[0014] Non-steroidal anti-inflammatory drugs (NSAIDs) have been
shown to induce apoptosis in colorectal cells. NSAIDs appear to
induce apoptosis via the release of Smac from the mitochondria
(PNAS, Nov. 30, 2004, vol. 101:16897-16902). Therefore, the use of
NSAIDs in combination with Smac mimetics would be expected to
increase the activity each drug over the activity of either drug
independently.
[0015] Many naturally occurring compounds isolated from bacterial,
plant, and animals can display potent and selective biological
activity in humans including anticancer and antineoplastic
activities. In fact, many natural products, or semi-synthetic
derivatives thereof, which possess anticancer activity, are already
commonly used as therapeutic agents; these include paclitaxel,
etoposide, vincristine, and camptothecin amongst others.
Additionally, there are many other classes of natural products such
as the indolocarbazoles and epothilones that are undergoing
clinical evaluation as anticancer agents. A reoccurring structural
motif in many natural products is the attachment of one or more
sugar residues onto an aglycone core structure. In some instances,
the sugar portion of the natural product is critical for making
discrete protein-ligand interactions at its site of action (i.e.,
pharmacodynamics) and removal of the sugar residue results in
significant reductions in biological activity. In other cases, the
sugar moiety or moieties are important for modulating the physical
and pharmacokinetic properties of the molecule. Rebeccamycin and
staurosporine are representative of the sugar-linked
indolocarbazole family of anticancer natural products with
demonstrated anti-kinase and anti-topoisomerase activity.
SUMMARY OF THE INVENTION
[0016] The present invention provides IAP antagonists that are
peptidomimetic compounds that mimic the tertiary binding structure
and activity of the N-terminal four amino acids of mature Smac to
IAPs. The invention also provides methods of using these mimetics
to modulate apoptosis and further for therapeutic purposes.
[0017] In one aspect of the present invention, an IAP antagonist
that is a homodimeric or heterodimeric compound having the general
formula (I), depicted below, and pharmaceutically acceptable salts
thereof. Solvates including hydrates, stereoisomers including
enantiomers, crystalline forms including polymorphs, and the like
are encompassed within the scope of the invention.
[0018] Another embodiment of the present invention is the
therapeutic combination of compounds of the present invention with
TRAIL or other chemical or biological agents which bind to and
activate the TRAIL receptor(s). TRAIL has received considerable
attention recently because of the finding that many cancer cell
types are sensitive to TRAIL-induced apoptosis, while most normal
cells appear to be resistant to this action of TRAIL.
TRAIL-resistant cells may arise by a variety of different
mechanisms including loss of the receptor, presence of decoy
receptors, or overexpression of FLIP which competes for zymogen
caspase-8 binding during DISC formation. In TRAIL resistance, Smac
mimetics increase tumor cell sensitivity to TRAIL leading to
enhanced cell death, the clinical correlations of which are
expected to be increased apoptotic activity in TRAIL resistant
tumors, improved clinical response, increased response duration,
and ultimately, enhanced patient survival rate. In support of this,
reduction in XIAP levels by in vitro antisense treatment has been
shown to cause sensitization of resistant melanoma cells and renal
carcinoma cells to TRAIL (Chawla-Sarkar, et al., 2004). The Smac
mimetics disclosed herein bind to IAPs and inhibit their
interaction with caspases, therein potentiating TRAIL-induced
apoptosis.
[0019] Another embodiment of the present invention provides Smac
mimetics which act synergistically with topoismerase inhibitors to
potentiate their apoptotic inducing effect. Topoisomerase
inhibitors inhibit DNA replication and repair, thereby promoting
apoptosis and have been used as chemothemotherapeutic agents.
Topoisomerase inhibitors promote DNA damage by inhibiting the
enzymes that are required in the DNA repair process. Therefore,
export of Smac from the mitochondria into the cell cytosol is
provoked by the DNA damage caused by topoisomerase inhibitors.
[0020] Topoisomerase inhibitors of both the Type I class
(camptothecin, topotecan, SN-38 (irinotecan active metabolite) and
the Type II class (etoposide) show potent synergy with the Smac
mimetics of the invention in a multi-resistant glioblastoma cell
line (T98G), breast cancer line (MDA-MB-231), and ovarian cancer
line (OVCAR-3) among others. Further examples of topoisomerase
inhibiting agents that may be used include, but are not limited to,
irinotecan, topotecan, etoposide, amsacrine, exatecan, gimatecan,
etc. Other topoisomerase inhibitors include, for example,
Aclacinomycin A, camptothecin, daunorubicin, doxorubicin,
ellipticine, epirubicin, and mitaxantrone.
[0021] In another embodiment of the invention, the
chemotherapeutic/anti-neoplastic agent may be a platinum containing
compound. In one embodiment of the invention the platinum
containing compound is cisplatin. Cisplatin can synergize with a
Smac peptidomimetic and potentiate the inhibition of an IAP, such
as but not limited to XIAP, cIAP-1, c-IAP-2, ML-IAP, etc. In
another embodiment a platinum containing compound is carboplatin.
Carboplatin can synergize with a Smac peptidomimetic and potentiate
the inhibition of an IAP, including, but not limited to, XIAP,
cIAP-1, c-IAP-2, ML-IAP, etc. In another embodiment a platinum
containing compound is oxaliplatin. The oxaliplatin can synergize
with a Smac peptidomimetic and potentiate the inhibition of an IAP,
including, but not limited to, XIAP, cIAP-1, c-IAP-2, ML-IAP,
etc.
[0022] In another embodiment of the invention, the
chemotherapeutic/anti-neoplastic agent that synergizes with a
compound according to the present invention is a taxane. Taxanes
are anti-mitotic, mitotic inhibitors or microtubule polymerization
agents. Taxanes include but are not limited to, docetaxel and
paclitaxel.
[0023] Taxanes are characterized as compounds that promote assembly
of microtubules by inhibiting tubulin depolymerization, thereby
blocking cell cycle progression through centrosomal impairment,
induction of abnormal spindles and suppression of spindle
microtubule dynamics. The unique mechanism of action of taxane is
in contrast to other microtubule poisons, such as Vinca alkaloids,
colchicine, and cryptophycines, which inhibit tubulin
polymerization. Microtubules are highly dynamic cellular polymers
made of alpha-beta-tubulin and associated proteins that play key
roles during mitosis by participating in the organization and
function of the spindle, assuring the integrity of the segregated
DNA. Therefore, they represent an effective target for cancer
therapy.
[0024] In another embodiment, any agent that activates the
intrinsic apoptotic pathway and/or causes the release of Smac or
cytochrome c from the mitochondria has the potential to act
synergistically with a Smac mimetic.
[0025] A combination of a Smac peptidomimetic and a
chemotherapeutic/anti neoplastic agent and/or radiation therapy of
any type that activates the intrinsic pathway may provide a more
effective approach to destroying tumor cells. Smac peptidomimetics
interact with IAP's, such as XIAP, cIAP-1, cIAP-2, ML-IAP, etc.,
and block the IAP mediated inhibition of apoptosis while
chemotherapeutics/anti neoplastic agents and/or radiation therapy
kills actively dividing cells by activating the intrinsic apoptotic
pathway leading to apoptosis and cell death. As is described in
more detail below, embodiments of the invention provide
combinations of a Smac pepidomimetc and a
chemotherapeutic/anti-neoplastic agent and/or radiation which
provide a synergistic action against unwanted cell proliferation.
This synergistic action between a Smac peptidomimetic and a
chemotherapeutic/anti-neoplastic agent and/or radiation therapy can
improve the efficiency of the chemotherapeutic/anti-neoplastic
agent and/or radiation therapy. This will allow for an increase in
the effectiveness of current chemotherapeutic/anti-neoplastic
agents or radiation treatment allowing the dose of the
chemotherapeutic/anti-neoplastic agent to be lowered, therein
providing both a more effective dosing schedule as well as a more
tolerable dose of chemotherapeutic/anti-neoplastic agent and/or
radiation therapy.
[0026] For simplicity and illustrative purposes, the principles of
the invention are described by referring mainly to specific
illustrative embodiments thereof. In addition, in the following
description, numerous specific details are set forth in order to
provide a thorough understanding of the invention. It will be
apparent however, to one of ordinary skill in the art, that the
invention may be practiced without limitation to these specific
details. In other instances, well known methods and structures have
not been described in detail so as not to unnecessarily obscure the
invention.
DEFINITIONS
[0027] "Alkyl" and "alkylene" mean a branched or unbranched,
saturated or unsaturated (i.e. alkenyl, alkenylene, alkynyl,
alkynylene) non-cyclic aliphatic hydrocarbon group, having up to 12
carbon atoms unless otherwise specified. (However, if alkenylene is
specified but alkynylene is not, then alkynylene is excluded. E.g.,
"alkylene or alkenylene" excludes alkynylene.) When used as part of
another term, for example, "alkylamino", the alkyl portion may be a
saturated hydrocarbon chain, however also includes unsaturated
hydrocarbon carbon chains such as "alkenylamino" and
"alkynylamino". Examples of particular alkyl groups include methyl,
ethyl, n-propyl, isopropyl, n-butyl, iso-butyl, sec-butyl,
tert-butyl, n-pentyl, 2-methylbutyl, 2,2-dimethylpropyl, n-hexyl,
2-methylpentyl, 2,2-dimethylbutyl, n-heptyl, 3-heptyl,
2-methylhexyl, and the like. The terms "lower alkyl",
"C.sub.1-C.sub.4 alkyl" and "alkyl of 1 to 4 carbon atoms" are
synonymous and used interchangeably to mean methyl, ethyl,
1-propyl, isopropyl, cyclopropyl, 1-butyl, sec-butyl or t-butyl.
Unless specified, optionally substituted alkyl groups may contain
one, two, three or four substituents which may be the same or
different. Examples of the above substituted alkyl groups include,
but are not limited to; cyanomethyl, nitromethyl, hydroxymethyl,
trityloxymethyl, propionyloxymethyl, aminomethyl, carboxymethyl,
carboxyethyl, carboxypropyl, alkyloxycarbonylmethyl,
allyloxycarbonylaminomethyl, carbamoyloxymethyl, methoxymethyl,
ethoxymethyl, t-butoxymethyl, acetoxymethyl, chloromethyl,
bromomethyl, iodomethyl, trifluoromethyl, 6-hydroxyhexyl,
2,4-dichloro(n-butyl), 2-amino(iso-propyl), 2-carbamoyloxyethyl and
the like. The alkyl group may also be substituted with a carbocycle
group. Examples include cyclopropylmethyl, cyclobutylmethyl,
cyclopentylmethyl, and cyclohexylmethyl groups, as well as the
corresponding-ethyl, -propyl, -butyl, -pentyl, -hexyl groups, etc.
Particular substituted alkyls are substituted methyl groups.
Examples of the substituted methyl group include groups such as
hydroxymethyl, protected hydroxymethyl (e.g.,
tetrahydropyranyloxymethyl), acetoxymethyl, carbamoyloxymethyl,
trifluoromethyl, chloromethyl, carboxymethyl, bromomethyl and
iodomethyl.
[0028] "Cycloalkyl" means a saturated or unsaturated cyclic
aliphatic hydrocarbon group, having up to 12 carbon atoms unless
otherwise specified and includes cyclic and polycyclic, including
fused cycloalkyl.
[0029] "Amino" denotes primary (i.e., --NH.sub.2), secondary (i.e.,
--NRH) and tertiary (i.e., --NRR) amines.
[0030] Particular secondary and tertiary amines are alkylamine,
dialkylamine, arylamine, diarylamine, aralkylamine and
diaralkylamine. Particular secondary and tertiary amines are
methylamine, ethylamine, propylamine, isopropylamine, phenylamine,
benzylamine dimethylamine, diethylamine, dipropylamine and
disopropylamine.
[0031] "Aryl" when used alone or as part of another term means a
carbocyclic aromatic group whether or not fused having the number
of carbon atoms designated or if no number is designated, up to 14
carbon atoms. Particular aryl groups include phenyl, naphthyl,
biphenyl, phenanthrenyl, naphthacenyl, and the like (see e.g.
Lang's Handbook of Chemistry (Dean, J. A., ed) 13.sup.th ed. Table
7-2 [1985]). In a particular embodiment an aryl group is phenyl.
Optionally substituted phenyl or optionally substituted aryl
denotes a phenyl group or aryl group that may be substituted with
one, two, three, four or five substituents chosen, unless otherwise
specified, from halogen (F, Cl, Br, I), hydroxy, protected hydroxy,
cyano, nitro, alkyl (such as C.sub.1-C.sub.6 alkyl), alkoxy (such
as C.sub.1-C.sub.6 alkoxy), benzyloxy, carboxy, protected carboxy,
carboxymethyl, protected carboxymethyl, hydroxymethyl, protected
hydroxymethyl, aminomethyl, protected aminomethyl, trifluoromethyl,
alkylsulfonylamino, arylsulfonylamino, heterocyclylsulfonylamino,
heterocyclyl, aryl, or other groups specified. One or more methyne
(CH) and/or methylene (CH.sub.2) groups in these substituents may
in turn be substituted with a similar group as those denoted above.
Examples of the term "substituted phenyl" includes but is not
limited to a mono- or di(halo)phenyl group such as 2-chlorophenyl,
2-bromophenyl, 4-chlorophenyl, 2,6-dichlorophenyl,
2,5-dichlorophenyl, 3,4-dichlorophenyl, 3-chlorophenyl,
3-bromophenyl, 4-bromophenyl, 3,4-dibromophenyl,
3-chloro-4-fluorophenyl, 2-fluorophenyl and the like; a mono- or
di(hydroxy)phenyl group such as 4-hydroxyphenyl, 3-hydroxyphenyl,
2,4-dihydroxyphenyl, the protected-hydroxy derivatives thereof and
the like; a nitrophenyl group such as 3- or 4-nitrophenyl; a
cyanophenyl group, for example, 4-cyanophenyl; a mono- or di(lower
alkyl)phenyl group such as 4-methylphenyl, 2,4-dimethylphenyl,
2-methylphenyl, 4-(iso-propyl)phenyl, 4-ethylphenyl,
3-(n-propyl)phenyl and the like; a mono or di(alkoxy)phenyl group,
for example, 3,4-dimethoxyphenyl, 3-methoxy-4-benzyloxyphenyl,
3-methoxy-4-(1-chloromethyl)benzyloxy-phenyl, 3-ethoxyphenyl,
4-(isopropoxy)phenyl, 4-(t-butoxy)phenyl, 3-ethoxy-4-methoxyphenyl
and the like; 3- or 4-trifluoromethylphenyl; a mono- or
dicarboxyphenyl or (protected carboxy)phenyl group such
4-carboxyphenyl; a mono- or di(hydroxymethyl)phenyl or (protected
hydroxymethyl)phenyl such as 3-(protected hydroxymethyl)phenyl or
3,4-di(hydroxymethyl)phenyl; a mono- or di(aminomethyl)phenyl or
(protected aminomethyl)phenyl such as 2-(aminomethyl)phenyl or 2,4-
(protected aminomethyl)phenyl; or a mono- or
di(N-(methylsulfonylamino)) phenyl such as
3-(N-methylsulfonylamino)) phenyl. Also, the term "substituted
phenyl" represents disubstituted phenyl groups where the
substituents are different, for example, 3-methyl-4-hydroxyphenyl,
3-chloro-4-hydroxyphenyl, 2-methoxy-4-bromophenyl,
4-ethyl-2-hydroxyphenyl, 3-hydroxy-4-nitrophenyl,
2-hydroxy-4-chlorophenyl, and the like, as well as trisubstituted
phenyl groups where the substituents are different, for example
3-methoxy-4-benzyloxy-6-methyl sulfonylamino,
3-methoxy-4-benzyloxy-6-phenyl sulfonylamino, and tetrasubstituted
phenyl groups where the substituents are different such as
3-methoxy-4-benzyloxy-5-methyl-6-phenyl sulfonylamino. Particular
substituted phenyl groups are 2-chlorophenyl, 2-aminophenyl,
2-bromophenyl, 3-methoxyphenyl, 3-ethoxy-phenyl, 4-benzyloxyphenyl,
4-methoxyphenyl, 3-ethoxy-4-benzyloxyphenyl, 3,4-diethoxyphenyl,
3-methoxy-4-benzyloxyphenyl,
3-methoxy-4-(1-chloromethyl)benzyloxy-phenyl,
3-methoxy-4-(1-chloromethyl)benzyloxy-6-methyl sulfonyl aminophenyl
groups. Fused aryl rings may also be substituted with the
substituents specified herein, for example with 1, 2 or 3
substituents, in the same manner as substituted alkyl groups.
[0032] "Heterocyclic group", "heterocyclic", "heterocycle",
"heterocyclyl", or "heterocyclo" alone and when used as a moiety in
a complex group such as a heterocycloalkyl group, are used
interchangeably and refer to any mono-, bi-, or tricyclic,
saturated or unsaturated, non-aromatic ring systems having the
number of atoms designated, generally from 5 to about 14 ring
atoms, where the ring atoms are carbon and at least one heteroatom
(nitrogen, sulfur or oxygen). In a particular embodiment the group
incorporates 1 to 4 heteroatoms. Typically, a 5-membered ring has 0
to 2 double bonds and 6- or 7-membered ring has 0 to 3 double bonds
and the nitrogen or sulfur heteroatoms may optionally be oxidized
(e.g. SO, SO.sub.2), and any nitrogen heteroatom may optionally be
quaternized. Particular non-aromatic heterocycles include
morpholinyl (morpholino), pyrrolidinyl, oxiranyl, oxetanyl,
tetrahydrofuranyl, 2,3-dihydrofuranyl, 2H-pyranyl,
tetrahydropyranyl, aziridinyl, azetidinyl, 1-methyl-2-pyrrolyl,
piperazinyl and piperidinyl. For the avoidance of doubt,
"heterocycloalkyl includes heterocycloalkyl alkyl.
[0033] "Heteroaryl" alone and when used as a moiety in a complex
group such as a heteroaralkyl group, refers to any mono-, bi-, or
tricyclic aromatic ring system having the number of atoms
designated where at least one ring is a 5-, 6- or 7-membered ring
containing from one to four heteroatoms selected from the group
nitrogen, oxygen, and sulfur (Lang's Handbook of Chemistry, supra).
Included in the definition are any bicyclic groups where any of the
above heteroaryl rings are fused to a benzene ring. The following
ring systems are examples of the heteroaryl (whether substituted or
unsubstituted) groups denoted by the term "heteroaryl": thienyl,
furyl, imidazolyl, pyrazolyl, thiazolyl, isothiazolyl, oxazolyl,
isoxazolyl, triazolyl, thiadiazolyl, oxadiazolyl, tetrazolyl,
thiatriazolyl, oxatriazolyl, pyridyl, pyrimidyl, pyrazinyl,
pyridazinyl, thiazinyl, oxazinyl, triazinyl, thiadiazinyl,
oxadiazinyl, dithiazinyl, dioxazinyl, oxathiazinyl, tetrazinyl,
thiatriazinyl, oxatriazinyl, dithiadiazinyl, imidazolinyl,
dihydropyrimidyl, tetrahydropyrimidyl, tetrazolo[1,5-b]pyridazinyl
and purinyl, as well as benzo-fused derivatives, for example
benzoxazolyl, benzofuryl, benzothiazolyl, benzothiadiazolyl,
benzotriazolyl, benzoimidazolyl and indolyl.
Particularly"heteroaryls" include; 1,3-thiazol-2-yl,
4-(carboxymethyl)-5-methyl-1,3-thiazol-2-yl,
4-(carboxymethyl)-5-methyl-1,3-thiazol-2-yl sodium salt,
1,2,4-thiadiazol-5-yl, 3-methyl-1,2,4-thiadiazol-5-yl,
1,3,4-triazol-5-yl, 2-methyl-1,3,4-triazol-5-yl,
2-hydroxy-1,3,4-triazol-5-yl, 2-carboxy-4-methyl-1,3,4-triazol-5-yl
sodium salt, 2-carboxy-4-methyl-1,3,4-triazol-5-yl,
1,3-oxazol-2-yl, 1,3,4-oxadiazol-5-yl,
2-methyl-1,3,4-oxadiazol-5-yl,
2-(hydroxymethyl)-1,3,4-oxadiazol-5-yl, 1, 2,4-oxadiazol-5-yl,
1,3,4-thiadiazol-5-yl, 2-thiol-1,3,4-thiadiazol-5-yl,
2-(methylthio)-1,3,4-thiadiazol-5-yl,
2-amino-1,3,4-thiadiazol-5-yl, 1H-tetrazol-5-yl,
1-methyl-1H-tetrazol-5-yl,
1-(1-(dimethylamino)eth-2-yl)-1H-tetrazol-5-yl,
1-(carboxymethyl)-1H-tetrazol-5-yl,
1-(carboxymethyl)-1H-tetrazol-5-yl sodium salt, 1-(methylsulfonic
acid)-1H-tetrazol-5-yl, 1-(methylsulfonic acid)-1H-tetrazol-5-yl
sodium salt, 2-methyl-1H-tetrazol-5-yl, 1,2,3-triazol-5-yl,
1-methyl-1,2,3-triazol-5-yl, 2-methyl-1,2,3-triazol-5-yl,
4-methyl-1,2,3-triazol-5-yl, pyrid-2-yl N-oxide,
6-methoxy-2-(n-oxide)-pyridaz-3-yl, 6-hydroxypyridaz-3-yl,
1-methylpyrid-2-yl, 1-methylpyrid-4-yl, 2-hydroxypyrimid-4-yl,
1,4,5,6-tetrahydro-5,6-dioxo-4-methyl-as-triazin-3-yl,
1,4,5,6-tetrahydro-4-(formylmethyl)-5,6-dioxo-as-triazin-3-yl,
2,5-dihydro-5-oxo-6-hydroxy-astriazin-3-yl,
2,5-dihydro-5-oxo-6-hydroxy-as-triazin-3-yl sodium salt,
2,5-dihydro-5-oxo-6-hydroxy-2-methyl-astriazin-3-yl sodium salt,
2,5-dihydro-5-oxo-6-hydroxy-2-methyl-as-triazin-3-yl,
2,5-dihydro-5-oxo-6-methoxy-2-methyl-as-triazin-3-yl,
2,5-dihydro-5-oxo-as-triazin-3-yl,
2,5-dihydro-5-oxo-2-methyl-as-triazin-3-yl,
2,5-dihydro-5-oxo-2,6-dimethyl-as-triazin-3-yl,
tetrazolo[1,5-b]pyridazin-6-yl and
8-aminotetrazolo[1,5-b]-pyridazin-6-yl. An alternative group of
"heteroaryl" includes: 4-(carboxymethyl)-5-methyl-1,3-thiazol-2-yl,
4-(carboxymethyl)-5-methyl-1,3-thiazol-2-yl sodium salt,
1,3,4-triazol-5-yl, 2-methyl-1,3,4-triazol-5-yl, 1H-tetrazol-5-yl,
1-methyl-1H-tetrazol-5-yl,
1-(1-(dimethylamino)eth-2-yl)-1H-tetrazol-5-yl,
1-(carboxymethyl)-1H-tetrazol-5-yl,
1-(carboxymethyl)-1H-tetrazol-5-yl sodium salt, 1-(methylsulfonic
acid)-1H-tetrazol-5-yl, 1-(methylsulfonic acid)-1H-tetrazol-5-yl
sodium salt, 1,2,3-triazol-5-yl,
1,4,5,6-tetrahydro-5,6-dioxo-4-methyl-as-triazin-3-yl,
1,4,5,6-tetrahydro-4-(2-formylmethyl)-5,6-dioxo-as-triazin-3-yl,
2,5-dihydro-5-oxo-6-hydroxy-2-methyl-as-triazin-3-yl sodium salt,
2,5-dihydro-5-oxo-6-hydroxy-2-methyl-as-triazin-3-yl,
tetrazolo[1,5-b]pyridazin-6-yl, and
8-aminotetrazolo[1,5-b]pyridazin-6-yl.
[0034] For the avoidance of doubt, aryl includes fused aryl which
includes, for example, naphthyl, indenyl; cycloalkyl includes fused
cycloalkyl which includes, for example, tetrahydronaphthyl and
indanyl; heteroaryl includes fused heteroaryl which includes, for
example, indoyl, benzofuranyl, benzothienyl; fused heterocyclo
includes fused heterocycloalkyl which includes, for example,
indolinyl, isoindolinyl, tetrahydroquinolinyl,
tetrahydroisoquinolinyl.
[0035] "Optionally substituted" means that a H atom can be, but is
not necessarily, replaced by one or more different atoms. One of
skill in the art will readily know, or can readily ascertain, what
atoms or moieties can be substituted for a hydrogen atom or atoms
in a given position. Typical optional substituents are any one or
more of hydroxy, alkyl, lower alkyl, alkoxy, lower alkoxy,
cycloalkyl, heterocycloalkyl, aryl, heteroaryl, halogen,
pseudohalogen, haloalkyl, pseudohaloalkyl, carbonyl, carboxyl,
mercapto, amino, nitro, and thiocarbonyl, but other moieties can
also be optional substituents. So, for example, optionally
substituted nitrogen can mean an amide, sulfonamide, urea,
carbamate, alkylamines, dialkylamines, arylamines, etc; optionally
substituted alkyl includes methyl, ethyl, propyl, isopropyl,
t-butyl, etc.; optionally substituted aryl includes phenyl, benzyl,
tolyl, pyridine, naphthyl, imidazole, etc. Reference to a group as
"optionally substituted" encompasses that group when it is
substituted as described above or, alternatively, when it is
unsubstituted. When "optionally substituted" is used in front of or
at the end of a listing of chemical groups, all such groups are
optionally substituted (unless otherwise indicated by context.)
[0036] A "Linker" is a bond or linking group whereby two chemical
moieties are directly covalently linked one to the other or are
indirectly linked via a chemical moiety that covalently links the
two chemical moieties, in either case, to form a homo- or
heterodimer. A Linker (L), therefore, is a single, double, or
triple covalent bond or is a contiguous chain, branched or
unbranched, substituted or unsubstituted, of 1 to about 100 atoms,
typically 1 to about 20 atoms and typically up to about 500 MW,
e.g., alkyl, alkylene, alkylyne, alkyloxyalkyl, alkylarylalkyl, or
optionally-substituted alkyl, alkylene, alkylyne, alkyloxyalkyl,
alkylarylalkyl chain of 1 to 12 atoms. Illustrative Linkers are
described, e.g., in US 20050197403 as well as in U.S. patent
application Ser. No. 11/363,387 filed Feb. 27, 2006, both of which
are incorporated herein by reference as though fully set forth.
[0037] "Pseudohalogens" are binary inorganic compounds of the
general form XY, where X is a cyanide, cyanate, thiocyanate etc.
group and Y is any of X, or a true halogen. Not all combinations
are known to be stable. Examples include cyanogen, (CN).sub.2 and
iodine cyanide, ICN. These anions behave as halogens and the
presence of the internal double bonds or triple bonds do not appear
to affect their chemical behavior.
[0038] "Inhibitor" or "antagonists" means a compound which reduces
or prevents the binding of IAP proteins to caspase proteins or
which reduces or prevents the inhibition of apoptosis by an IAP
protein, or which binds to an IAP BIR domain in a manner similar to
the amino terminal portion of Smac, thereby freeing Smac to inhibit
the action of an IAP.
[0039] "Pharmaceutically acceptable salts" include both acid and
base addition salts. "Pharmaceutically acceptable acid addition
salt" refers to those salts which retain the biological
effectiveness and properties of the free bases and which are not
biologically or otherwise undesirable, formed with inorganic acids
such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric
acid, carbonic acid, phosphoric acid and the like, and organic
acids may be selected from aliphatic, cycloaliphatic, aromatic,
araliphatic, heterocyclic, carboxylic, and sulfonic classes of
organic acids such as formic acid, acetic acid, propionic acid,
glycolic acid, gluconic acid, lactic acid, pyruvic acid, oxalic
acid, malic acid, maleic acid, maloneic acid, succinic acid,
fumaric acid, tartaric acid, citric acid, aspartic acid, ascorbic
acid, glutamic acid, anthranilic acid, benzoic acid, cinnamic acid,
mandelic acid, embonic acid, phenylacetic acid, methanesulfonic
acid, ethanesulfonic acid, p-toluenesulfonic acid, salicyclic acid
and the like.
DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS
[0040] It must also be noted that as used herein and in the
appended claims, the singular forms "a", "an", and "the" include
plural reference unless the context clearly dictates otherwise.
Unless defined otherwise, all technical and scientific terms used
herein have the same meanings as commonly understood by one of
ordinary skill in the art. Although any methods similar or
equivalent to those described herein can be used in the practice or
testing of embodiments of the present invention, the preferred
methods are now described. All publications and references
mentioned herein are incorporated by reference. Nothing herein is
to be construed as an admission that the invention is not entitled
to antedate such disclosure by virtue of prior invention.
[0041] The terms "mimetic," "peptide mimetic" and "peptidomimetic"
are used interchangeably herein, and generally refer to a peptide,
partial peptide or non-peptide molecule that mimics the tertiary
binding structure or activity of a selected native peptide or
protein functional domain (e.g., binding motif or active site).
These peptide mimetics include recombinantly or chemically modified
peptides, as well as non-peptide agents such as small molecule drug
mimetics, as further described below.
[0042] As used herein, the terms "pharmaceutically acceptable",
"physiologically tolerable" and grammatical variations thereof, as
they refer to compositions, carriers, diluents and reagents, are
used interchangeably and represent that the materials can be
administered to a human being.
[0043] As used herein "subject" or "patient" refers to an animal or
mammal including, but not limited to, human, dog, cat, horse, cow,
pig, sheep, goat, chicken, monkey, rabbit, rat, mouse, etc.
[0044] As used herein, the term "therapeutic" means an agent
utilized to treat, combat, ameliorate, prevent or improve an
unwanted condition or disease of a patient. Embodiments of the
present invention are directed to promote apoptosis, and thus cell
death.
[0045] The terms "therapeutically effective amount" or "effective
amount", as used herein, may be used interchangeably and refer to
an amount of a therapeutic compound component of the present
invention. For example, a therapeutically effective amount of a
therapeutic compound is a predetermined amount calculated to
achieve the desired effect, i.e., to effectively promote apoptosis,
preferably by eliminating an IAP inhibition of apoptosis, more
preferably by inhibiting an IAP binding to a caspase.
[0046] It has been demonstrated in accordance with the present
invention that the IAP-binding compounds of the present invention
are capable of potentiating apoptosis of cells. The following
compounds are illustrative of dimers of the present invention.
##STR00001##
[0047] wherein Z.sub.1a, Z.sub.2a, Z.sub.1b, and Z.sub.2b are
independently CH or N;
[0048] R.sub.1a and R.sub.1b are independently H or optionally
substituted hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl,
arylalkyl, heteroaryl, or heteroarylalkyl; and when R.sub.2a' is H
then R.sub.2a and R.sub.1a can together form an aziridine or
azetidine ring and when R.sub.2b' is H then R.sub.2b and R.sub.1b
can together form an aziridine or azetidine ring;
[0049] R.sub.2a, R.sub.2a', R.sub.2b and R.sub.2b' are
independently H or optionally substituted alkyl, cycloalkyl, or
heterocycloalkyl; or when R.sub.2a' is H then R.sub.2a and R.sub.1a
can together form an aziridine or azetidine ring and when R.sub.2b'
is H then R.sub.2b and R.sub.1b can together form an aziridine or
azetidine ring;
[0050] R.sub.3a, R.sub.3b, R.sub.4a and R.sub.4b are independently
H or optionally substituted alkyl, cycloalkyl, heterocycloalkyl,
aryl, arylalkyl, heteroaryl, or heteroarylalkyl; or, R.sub.4a and
R.sub.3a, or R.sub.4b and R.sub.3b, or both, are carbon atoms
linked by an optionally-substituted alkylene or alkenylene group of
1 to 8 carbon atoms where one to three carbon atoms can be replaced
by N, O, S(O).sub.n, or C.dbd.O;
[0051] R.sub.5a, R.sub.6a, R.sub.5b, and R.sub.6b are independently
H or optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, arylalkyl, heteroaryl, or heteroarylalkyl;
or R.sub.5a and R.sub.6a or R.sub.5b and R.sub.6b, or both, are
carbon atoms linked by an optionally-substituted alkylene or
alkenylene group of 1 to 8 carbon atoms where one to three carbon
atoms can be replaced by N, O, S(O).sub.n, or C.dbd.O;
[0052] R.sub.7a, R.sub.7b, R.sub.8a, R.sub.8b are independently H
or optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, arylalkyl, heteroaryl, or heteroarylalkyl;
or R.sub.7a and R.sub.8a, or R.sub.7b and R.sub.8b, or both, can be
linked by an optionally-substituted alkylene or alkenylene group of
3 to 8 carbon atoms where one to three carbon atoms can be replaced
by N, O, S(O).sub.n, or C.dbd.O to form an aromatic or non-aromatic
ring;
[0053] n can be the same or different in each usage and is 0, 1, or
2;
[0054] Xa is --O--, --N(La--R.sub.10a)-, --S--,
optionally-substituted --C(La--R.sub.10a)=CH--, --C(O)--O--,
--C(O)--N(La--R.sub.10a)-, --N.dbd.C(La--R.sub.10a)-;
[0055] Xb is --O--, --N(Lb-R.sub.10b)-, --S--,
optionally-substituted --C(Lb-R.sub.10b)=CH--, --C(O)--O--,
--C(O)--N(Lb-R.sub.10b)-, --N.dbd.C(Lb-R.sub.10b)-;
[0056] La and Lb are independently a covalent bond or
C.sub.1-C.sub.4 alkylene;
[0057] Wa, Wb, R.sub.10a, and R.sub.10b are defined in paragraphs
(a) through (e), which follow:
[0058] (a) when Wa and Wb together are a Linker, then Xa or Xb are
independently --O--, --S--, or --C(O)--O--; R.sub.10a and
R.sub.10b, respectively, are absent; or
[0059] (b) when Wa and Wb together are a Linker; Xa is
--N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--,
--N.dbd.C(Lb-R.sub.10b)-, or --C(O)--N(Lb-R.sub.10b)-; R.sub.10a
and R.sub.10b are independently H or optionally substituted
hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
or
[0060] (c) when Wa and Wb together are a Linker; Xa is
--N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--,
--N.dbd.C(Lb-R.sub.10b)-, or --C(O)--N(Lb-R.sub.10b)-; R.sub.10a
and R.sub.10b together are a Linker; or
[0061] (d) when Wa and Wb are not covalently bound, Wa and Wb are
independently H, Cl, Br, F, CN, COOH, or optionally substituted
hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl;
Xa is --N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--N(Lb-R.sub.10b)-, --C(Lb-R.sub.10b)=CH--,
--N.dbd.C(Lb-R.sub.10b)-, or --C(O)--N(Lb-R.sub.10b)-; R.sub.10a
and R.sub.10b together are a Linker; or
[0062] (e) when Wa and Wb are not covalently bound, Wa is H, Cl,
Br, F, CN, COOH, or optionally substituted hydroxyl, alkyl,
cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; Xa is
--N(La--R.sub.10a)-, --C(La--R.sub.10a)=CH--,
--N.dbd.C(La--R.sub.10a)-, or --C(O)--N(La--R.sub.10a)-; Xb is
--O--, --N(Lb-R.sub.10b)-, --S--, --C(Lb-R.sub.10b)=CH--,
--C(O)--O--, --N.dbd.C(Lb-R.sub.10b)-, --C(O)--N(Lb-R.sub.10b)-;
and Lb is a covalent bond, and R.sub.10b is absent or is H or
optionally substituted hydroxyl, alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl; and Wb and R.sub.10a
together are a Linker.
[0063] Illustrative compounds have formula (II):
##STR00002##
wherein
[0064] Xa is --N--, --C.dbd.C(R.sub.16a)-, --N.dbd.C-- or
--C(O)N--;
[0065] Xb is --N--, --C.dbd.C(R.sub.16b)-, --N.dbd.C-- or
--C(O)N--;
[0066] La and Lb are independently a covalent bond or
C.sub.1-C.sub.4 alkylene;
[0067] Ya is --C--, --N--, or --N.sup.+--; such that,
[0068] When Ya is --C-- then R.sub.10a, R.sub.11a, R.sub.12a,
R.sub.13a, R.sub.14a, R.sub.15a, and R.sub.16a are, independently,
--H, halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkoxyalkyl,
sulfonate, aryloxy, heteroaryloxy, acyl, acetyl, carboxylate,
sulfonate, sulfone, imine, or oxime; provided that when Xa is --N--
or --C(O)--N--, -L.sub.1-R.sub.10a is bound to the --N-- atom; and,
when Xa is --C.dbd.C(R.sub.16a)- or --N.dbd.C--, -L.sub.1-R.sub.10a
is bound to the --C.dbd. atom; and
[0069] When Ya is --N-- or --N.sup.+--, then R.sub.11a is absent or
--O--, and R.sub.10a, R.sub.11a, R.sub.13a, R.sub.14a, R.sub.15a,
and R.sub.16a are, independently, --H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy, acyl, acetyl,
carboxylate, sulfonate, sulfone, imine, or oxime; provided that
when X is --N-- or --C(O)--N--, -L.sub.1-R.sub.10 is bound to the
--N-- atom; and, when X is --C.dbd.C(R.sub.16a)- or --N.dbd.C--,
-L.sub.1-R.sub.10a is bound to the --C.dbd. atom;
[0070] Yb is --C--, --N--, or --N.sup.+--; such that,
[0071] When Yb is --C-- then R.sub.10b, R.sub.11b, R.sub.12b,
R.sub.13b, R.sub.14b, R.sub.15b, and R.sub.16b are, independently,
--H, halogen, or optionally substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkoxyalkyl,
sulfonate, aryloxy, heteroaryloxy, acyl, acetyl, carboxylate,
sulfonate, sulfone, imine, or oxime; provided that when Xb is --N--
or --C(O)--N--, -L.sub.1-R.sub.10b is bound to the --N-- atom; and,
when Xb is --C.dbd.C(R.sub.16b)- or --N.dbd.C--, -L1-R.sub.10b is
bound to the --C.dbd. atom; and
[0072] When Yb is --N-- or --N.sup.+--, then R.sub.11b is absent or
--O--, and R.sub.10b, R.sub.12b, R.sub.13b, R.sub.14b, R.sub.15b,
and R.sub.16b are, independently, --H, halogen, or optionally
substituted alkyl, cycloalkyl, heterocycloalkyl, aryl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkoxyalkyl, sulfonate, aryloxy, heteroaryloxy, acyl, acetyl,
carboxylate, sulfonate, sulfone, imine, or oxime; provided that
when Xb is --N-- or --C(O)--N--, -L1-R.sub.10b is bound to the
--N-- atom; and, when Xb is --C.dbd.C(R.sub.16b)- or --N.dbd.C--,
-L.sub.1-R.sub.10b is bound to the --C.dbd. atom.
[0073] Illustrative compounds have formula (IV):
##STR00003##
[0074] In illustrative compounds of formula I, II, or IV, when
Z.sub.1a is N and Z.sub.2a is CH, and Z.sub.1b is N and Z.sub.2b is
CH, then at least one of the following is true:
[0075] (i) R.sub.5a and R.sub.6a are not both carbon atoms linked
by a single covalent bond;
[0076] (ii) R.sub.5a and R.sub.6a are both carbon atoms linked by a
single covalent bond and R.sub.5a is disubstituted;
[0077] (iii) R.sub.5a and R.sub.6a are both carbon atoms linked by
a single covalent bond and R.sub.6a is mono- or disubstituted;
[0078] (iv) R.sub.5a and R.sub.6a are both carbon atoms linked by a
single covalent bond and R.sub.1a and R.sub.4a are both carbon
atoms linked by a covalent bond or by an optionally-substituted
alkylene or alkenylene group of 1 to 8 carbon atoms where one to
three carbon atoms can be replaced by N, O, S(O).sub.n, or
C.dbd.O.
[0079] (v) R.sub.5a and R.sub.6a are both carbon atoms linked by a
single covalent bond and neither R.sub.2a nor R.sub.2a' are H.
[0080] In illustrative embodiments of compounds of formula I, II,
or IV, one or any two or more of the following limitations may
apply:
[0081] R.sub.3a, R.sub.4a, R.sub.3b, and R.sub.4b are independently
selected from H, methyl, ethyl, isopropyl, isobutyl, sec-butyl,
tert-butyl, cycloalkyl, heterocycloalkyl, aryl, arylalkyl,
heteroaryl, or heteroarylalkyl, optionally-substituted with
hydroxyl, mercapto, sulfonyl, alkylsulfonyl, halogen,
pseudohalogen, amino, carboxyl, alkyl, haloalky, pseudohaloalkyl,
alkoxy, or alkylthio; or R.sub.3a, R.sub.4a, R.sub.3b, and R.sub.4b
are independently optionally substituted lower alkyl or
C.sub.3-C.sub.8 cycloalkyl wherein the optional substituents are
hydroxy or lower alkoxy;
[0082] R.sub.2a and R.sub.2b are independently selected from --H,
methyl, fluoromethyl, difluoromethyl, ethyl, fluoroethyl,
hydroxyethyl, and cycloalkyl;
[0083] R.sub.1a and R.sub.1b are independently selected from H,
methyl, allyl, propargyl, ethyl, hydroxyethyl, cycloalkyl, or
cycloalkylmethyl;
[0084] Wa and Wb together are a covalent bond or optionally
substituted alkylene, cycloalkyl, or aryl, of 2 to 20 carbon atoms
where one or more carbon atoms can be replaced with N, O, or
S(O).sub.n; and Xa and Xb are independently --O--, --S--, or
--C(O)--O--; or Wa and Wb are not covalently bound, and Wa and Wb
are independently H, Cl, Br, F, CN, COOH, or optionally substituted
hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, arylalkyl,
heteroaryl, or heteroarylalkyl; or Wb and R.sub.10a (or Wa and
R.sub.10b) together are a covalent bond or optionally substituted
alkylene, cycloalkyl or aryl, of 2 to 20 carbon atoms where one or
more carbon atoms can be replaced with N, O, or S(O).sub.n;
[0085] La and Lb are each a covalent bond;
[0086] R.sub.10a and R.sub.10b are independently H or optionally
substituted hydroxyl, alkyl, cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl; or R.sub.10a and R.sub.10b together are an
optionally-substituted alkylene, cycloalkyl, or aryl of 2 to 20
carbon atoms where one or more carbon atoms can be replaced with N,
O, or S(O).sub.n;
[0087] Z.sub.1a and Z.sub.1b are both N and Z.sub.2a and Z.sub.2b
are both C;
[0088] R.sub.10a and R.sub.10b are not heterocycloalkyl or
heteroaryl.
[0089] In illustrative embodiments, Wa, Wb, R.sub.10a, and
R.sub.10b are defined in paragraphs
[0090] (a) through (e), which follow:
[0091] (a) when Wa and Wb together are -L- and form, for example, a
covalent bond, alkylene, cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl, or an optionally-substituted alkylene, chain of 2 to 20
carbon atoms where one or more carbon atoms can be replaced with N,
O, or S(O).sub.n; and Xa and Xb are respectively --O--, --S--, or
--C(O)--O--; R.sub.10a and R.sub.10b are absent;
[0092] (b) when Wa and Wb together are -L- and form, for example, a
covalent bond, alkylene, cycloalkyl, heterocycloalkyl, aryl,
arylalkylene, arylalkylalkylene, heteroaryl, heteroarylalkylene, or
an optionally-substituted alkylene, chain of 2 to 20 carbon atoms
where one or more carbon atoms can be replaced with N, O, or
S(O).sub.n; and Xa and Xb are respectively --N(La--R.sub.10a)-,
optionally-substituted --C(La--R.sub.10a)=CH--, or
--C(O)--N(La--R.sub.10a)-, or --N(Lb-R.sub.10b)-,
optionally-substituted --C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b are independently
H, hydroxyl, hydroxyalkyl, alkyl, alkoxy, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl, in each case
optionally-substituted; or
[0093] (c) when Wa and Wb together are -L- and form, for example, a
covalent bond, alkylene, cycloalkyl, heterocycloalkyl, aryl, or
heteroaryl, or an optionally-substituted alkylene chain of 2 to 20
carbon atoms where one or more carbon atoms can be replaced with N,
O, or S(O).sub.n; and Xa and Xb are respectively --N(LaR.sub.10a)-,
optionally-substituted --C(La--R.sub.10a)=CH--, or
--C(O)--N(La--R.sub.10a)-, or --N(Lb-R.sub.10b)-,
optionally-substituted --C(Lb-R.sub.10b)=CH--, or
--C(O)--N(Lb-R.sub.10b)-; R.sub.10a and R.sub.10b together are -L-
and form, for example, an optionally-substituted alkylene, or
alkyloxyalkylene chain of 2 to 20 carbon atoms where one or more
carbon atoms can be replaced with N, O, or S(O).sub.n; or
[0094] (d) when Wa and Wb are not covalently bound, Wa and Wb are
independently H, Cl, Br, F, CN, CO.sub.2H, alkyl, cycloalkyl,
heterocycloalkyl, aryl, heteroaryl, or optionally-substituted
alkyl, cycloalkyl, heterocycloalkyl, aryl, or heteroaryl; Xa and Xb
are respectively --N(La--R.sub.10a)-, optionally-substituted
--C(La--R.sub.10a)=CH--, or --C(O)--N(La--R.sub.10a)-, or
--N(Lb-R.sub.10b)-, optionally-substituted --C(Lb-R.sub.10b)=CH--,
or --C(O)--N(Lb-R.sub.10b)-; and R.sub.10a and R.sub.10b together
are -L--and form, for example, an optionally-substituted alkylene,
or alkyloxyalkylene chain of 2 to 20 carbon atoms where one or more
carbon atoms can be replaced with N, O, or S(O).sub.n; or
[0095] (e) when Wa and Wb are not covalently bound, Wa is H, Cl,
Br, F, CN, CO.sub.2H, alkyl, cycloalkyl, heterocycloalkyl, aryl,
heteroaryl, or optionally-substituted alkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl; Xa is --N(La--R.sub.10a)-,
optionally-substituted --C(La--R.sub.10a)=CH--, or
--C(O)--N(La--R.sub.10a)-; Xb is --O--, --N(Lb-R.sub.10b)-, --S--,
optionally-substituted --C(Lb-R.sub.10b)=CH--, --C(O)--O--,
--C(O)--N(Lb-R.sub.10b)-; and R.sub.10b is absent or H, hydroxyl,
hydroxyalkyl, alkyl, alkoxy, alkoxyalkyl, cycloalkyl,
heterocycloalkyl, aryl, or heteroaryl, in each case
optionally-substituted; and Wb and R.sub.10a together are -L--and
form, for example, a bond, alkylene, cycloalkyl, aryl, or
heteroaryl, or an optionally-substituted alkylene, chain of 2 to 20
carbon atoms where one or more carbon atoms can be replaced with N,
O, or S(O).sub.n.
[0096] Illustrative compounds are compounds having the formula
##STR00004##
wherein R.sub.1a, R.sub.1b, R.sub.2a, R.sub.2b, R.sub.3a, and
R.sub.3b are independently lower alkyl, lower alkoxy, lower
alkanol, or C.sub.3-C.sub.6 cycloalkyl; R.sub.14a and R.sub.14b are
independently --OH, lower alkoxy or lower alkyl; R.sub.11a,
R.sub.11b, R.sub.12a, R.sub.12b, R.sub.13a, R.sub.13b are
independently --H or halogen.
[0097] Illustrative compounds are compounds having the formula:
##STR00005##
wherein R.sub.1a, R.sub.1b, R.sub.2a, R.sub.2b, R.sub.3a, and
R.sub.3b are independently lower alkyl, lower alkoxy, lower
alkanol, or C.sub.3-C.sub.6 cycloalkyl; R.sub.17a and R.sub.17b are
independently --OH, lower alkoxy or lower alkyl; R.sub.12a and
R.sub.12b are independently --H or halogen.
[0098] Illustrative Chemistry Schemes:
[0099] Abbreviations used in the following preparations, which are
illustrative of synthesis of compounds of the invention generally,
are: Cbz: Benzyloxycarbonyl; Boc: tert-butyloxycarbonyl; THF:
tetrahydrofuran; DCM: dichloromethane; DDQ:
2,3-dichloro-5,6-dicyano-1,4-benzoquinone; NMP:
N-methylpyrrolidinone; DMF: dimethylformamide; TFA: trifluoroacetic
acid; HOAc or AcOH: acetic acid; Hex: hexanes; HPLC: high
performance liquid chromatography; TLC: thin layer chromatography;
EtOAc: ethyl acetate; DIPEA: diisopropylethylamine; TEA:
triethylamine; HATU:
2-(7-Aza-1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium
hexafluorophosphate
[0100] Compounds of formula 8 can be prepared using methods
outlined in Angiolini et al. (Eur. J. Org. Chem. 2000, 2571-2581),
Harris et al. (Org. Lett. 2003, 5, 1847-1850), O'Neil et al.
(Bioorg. Med. Chem. Lett. 2005, 15, 5434-5438), Grossmith et al.
(Synlett 1999, 10, 1660-1662), and in U.S. Patent Application
Publication Number 20060025347 and U.S. patent application Ser. No.
11/363,387 filed Feb. 27, 2006, all of which are incorporated by
reference herein as though fully set forth, and described in
Schemes I and II.
##STR00006##
##STR00007##
[0101] Compounds of formula 18 can be prepared using methods
outlined in Schemes III and IV and described in Jako et al. (J.
Org. Chem. 1991, 56, 5729-5733), Kozikowski et al. (J. Am. Chem.
Soc. 1995, 117, 6666-6672), Sheppard et al. (J. Med. Chem. 1994,
37, 2011-2032), and in U.S. Patent Application Publication Number
20060025347 and U.S. patent application Ser. No. 11/363,387 filed
Feb. 27, 2006, all of which are incorporated by reference herein as
though fully set forth, and described in Schemes III and IV.
##STR00008## ##STR00009##
##STR00010##
[0102] Compounds of formula 29 can be prepared using methods
outlined in Liu et al. (Tetrahedron 2003, 59, 8515-8523), Mish et
al. (J. Am. Chem. Soc. 1997, 119, 8379-8380), and in U.S. Patent
Application Publication Number 20060025347 and U.S. patent
application Ser. No. 11/363,387 filed Feb. 27, 2006, all of which
are incorporated by reference herein as though fully set forth, and
described in Schemes V and VI.
##STR00011## ##STR00012##
##STR00013##
[0103] Compounds of formula 36 can be prepared using methods
outlined in Hoffmann et al. (J. Org. Chem. 2003, 68, 62-69) and in
U.S. Patent Application Publication Number 20060025347 and U.S.
patent application Ser. No. 11/363,387 filed Feb. 27, 2006, all of
which are incorporated by reference herein as though fully set
forth, and described in Schemes VII and VIII.
##STR00014##
##STR00015##
[0104] Additional compounds of the invention can be preared can be
prepared substantially as described in Schemes IX-XXIX, below.
##STR00016##
[0105] 3-Hydroxypyrrolidine-1,2-dicarboxylic acid 1-tert-butyl
ester 2-methyl ester (38): A solution containing
3-hydroxy-pyrrolidine-1,2-dicarboxylic acid 1-tert-butyl ester (37,
16 g, 71 mmol).sup.1 in DMF (100 mL) was cooled to 0.degree. C. To
this solution was added K.sub.2CO.sub.3 (16 g, 116 mmol) followed
by iodomethane (5.4 mL, 87 mmol). The reaction mixture was slowly
warmed to ambient temperature over 1 h at which time it became a
yellow heterogeneous solution. This mixture was heated at
90.degree. C. for 1 h and then cooled to ambient temperature. The
solution was diluted with brine, extracted with diethyl ether,
dried over anhydrous Na.sub.2SO.sub.4, filtered, and concentrated
to afford 14.8 g (87%) of 38 as a yellow oil..sup.2 [0106] .sup.1
Hodges, J. A.; Raines, R. T. J. Am. Chem. Soc. 2005, 45, 15923.
[0107] .sup.2 Demange, L.; Cluzeau, J.; Menez, A.; Dugave, C.
Tetrahedron Lett. 2001, 42, 651.
##STR00017##
[0108] 3-(tent-Butyldimethylsilanyloxy)pyrrolidine-1,2-dicarboxylic
acid 1-tert-butyl ester 2-methyl ester (39): A solution containing
alcohol 38 (14.8 g, 60 mmol) in DCM (150 mL) was cooled to
0.degree. C. To this solution was added imidazole (5.4 g, 79 mmol)
followed by t-butyl-dimethylsilyl-chloride (10 g, 66 mmol) in two
portions. The reaction mixture was warmed to ambient temperature
over 1 h. After 5 h, the solution was diluted with 1M HCl and
extracted twice with DCM. The combined organic extracts were dried
over anhydrous Na.sub.2SO.sub.4, filtered, and concentrated to
afford 21.2 g (99%) of 39 as a yellow oil. .sup.1H NMR (CDCl.sub.3,
300 MHz) .delta.4.38-4.34 (m, 1H), 4.18 (bs, rotomers, 0.5H), 4.04
(app d, J=2.1 Hz, rotomers, 0.5H), 3.74 (s, 3H), 3.62-3.50 (m, 2H),
2.04-1.96 (m, 1H), 1.85-1.78 (m, 1H), 1.46 (s, minor rotomer), 1.41
(s, 9H), 0.92 (s, minor rotomer), 0.86 (s, 9H), 0.11 (s, 6H), 0.09
(s, minor rotomer) ppm.
##STR00018##
[0109]
3-(tert-Butyldimethylsilanyloxy)-2-hydroxymethylpyrrolidine-1-carbo-
xylic acid tert-butyl ester (40): A solution containing 39 (12 g,
33 mmol) in THF (50 mL) was cooled to 0.degree. C. LiBH.sub.4 in
THF (2M, 20 mL) was added in a dropwise fashion. After 1 h, the
solution was warmed to ambient temperature. After 2 h, the solution
was diluted with MeOH, then H.sub.2O, and concentrated. The residue
was extracted with EtOAc, washed with 1M HCl, saturated aqueous
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated to afford 9.5 g (87%) of 40 as a
colorless oil..sup.3
[0110] .sup.3 Herdeis, C.; Hubmann, H. P.; Lotter, H. Tetrahedron:
Asymmetry, 1994, 5, 119.
##STR00019##
[0111]
3-(tert-Butyldimethylsilanyloxy)-2-formylpyrrolidine-1-carboxylic
acid tert-butyl ester (41): A solution containing 2M oxalyl
chloride in DCM (22 mL) in DCM (40 mL) was cooled to -78.degree. C.
A solution containing DMSO (3.2 mL, 45 mmol) in DCM (20 mL) was
added in a dropwise fashion. After 45 min, alcohol 40 (9.5 g, 29
mmol) in DCM (50 mL) was added in a dropwise fashion. After 45 min,
TEA (16 mL, 115 mmol) was added in a dropwise fashion. The reaction
mixture was warmed and maintained at 0.degree. C. for 15 min. The
solution was diluted with 1M HCl, extracted with DCM, washed with
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 9.5 g (100%) of 41 as a yellow oil. .sup.1H
NMR (CDCl.sub.3, 300 MHz) .delta.9.53 (d, J=29 Hz, 1H), 4.39-4.36
(m, 1H), 4.24 (m, rotomer, 0.5H), 3.93 (m, rotomer, 0.5H),
3.73-3.49 (m, 2H), 1.98-1.86 (m, 2H), 1.47 (s, minor rotomer), 1.41
(s, 9H), 0.88 (s, 9H), 0.09 (s, 6H), 0.07 (s, minor rotomer)
ppm.
##STR00020##
[0112]
3-(tert-Butyldimethylsilanyloxy)-2-(2-ethoxycarbonylvinyl)pyrrolidi-
ne-1-carboxylic acid tert-butyl ester (42): To a suspension
containing NaH (60%, 1.9 g, 46 mmol) in THF (50 mL) was slowly
added triethylphosphonoacetate (7.5 mL, 38 mmol) in THF (20 mL) at
0.degree. C. After 30 min, a solution containing aldehyde 41 (9.5
g, 29 mmol) in THF (40 mL) was then added in a dropwise fashion.
The solution became orange-colored and stirring was continued for
0.5 h. The reaction mixture was diluted with brine, extracted with
EtOAc, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 8.6 g (74%) of 42 as a yellow oil which was
used without further purification. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta.6.82-6.72 (m, 1H), 5.87 (d, J=15.6 Hz, 1H), 4.24-4.11
(m, 4H), 3.67-3.46 (m, 2H), 1.94-1.89 (m, 1H), 1.79 (m, 1H), 1.48
(s, rotomer, 4.5H), 1.41 (s, rotomer, 4.5H), 1.31-1.24 (m, 3H),
0.91-0.88 (m, 9H), 0.09-0.07 (m, 6H) ppm.
##STR00021##
[0113]
3-(tert-Butyldimethylsilanyloxy)-2-(3-hydroxypropenyl)pyrrolidine-1-
-carboxylic acid tert-butyl ester (43): A solution containing 42
(8.6 g, 22 mmol) in DCM (80 mL) was cooled to -78.degree. C. To
this solution was slowly added boron trifluoride etherate (2.8 mL,
22 mmol) followed by the addition of 1M DIBALH in DCM (60 mL). The
solution was stirred at -78.degree. C. for 1 h. The reaction
mixture was then treated with EtOAc and stirred for 30 min. The
reaction mixture was allowed to warm to -5.degree. C. The reaction
was quenched by the dropwise addition of 1M HCl. The mixture was
diluted with DCM and H.sub.2O and the layers were separated. The
aqueous layer was extracted with DCM. The combined organic extracts
were dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 8.5 g of 43 as a light yellow oil which was
used without further purification. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta.5.70 (m, 1H), 5.59-5.55 (m, 1H), 4.16-4.13 (m, 2H),
4.05 (m, 2H), 3.72-3.35 (m, 4H), 1.95-1.88 (m, 2H), 1.77-1.67 (m,
2H), 1.48-1.44 (m, 9H), 0.88 (s, 9H), 0.08-0.03 (m, 6H) ppm.
##STR00022##
[0114]
trans-2R-[3-(tert-Butyldimethylsilanyloxy)]-2-(3-methanesulfonyloxy-
propenyl)pyrrolidine-1-carboxylic acid tert-butyl ester (44): To a
solution containing alcohol 43 (8.5 g, 24 mmol) in DCM (30 mL) was
added triethylamine (4.0 mL, 29 mmol). The solution was cooled in
an ice bath and methanesulfonyl chloride (2 mL, 26 mmol) was added
in a dropwise fashion. The reaction mixture was stirred at ambient
temperature for 30 min. Water (10 mL) was added and the product was
extracted with DCM (3.times.50 mL). The organic extracts were
combined and washed with 1M HCl, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated to afford 8.9 g of 44
(92% over two steps) as an orange oil that was used without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.5.73 (m,
1H), 4.71 (d, J=5.4 Hz, 1H), 4.30-4.15 (m, 1H), 4.06 (m, 1H),
3.54-3.33 (m, 2H), 3.02 (s, 3H), 1.94-1.89 (m, 1H), 1.79-1.78 (m,
1H), 1.45-1.43 (m, 9H), 0.92-0.87 (m, 9H), 0.09-0.07 (m, 6H)
ppm.
##STR00023##
[0115]
trans-2R-[2-{3-[Acetyl-(2-bromo-5-fluorophenyl)amino]propenyl}]-3-(-
tert-butyldimethylsilanyloxy)pyrrolidine-1-carboxylic acid
tert-butyl ester (45): To a solution containing
N-(2-bromo-5-fluorophenyl)acetamide (5.7 g, 24 mmol) in DMF (30 mL)
was added NaH (60%, 1.2 g, 30 mmol) at 0.degree. C. After 30 min,
the solution was warmed and maintained at ambient temperature for
30 min. To this solution was slowly added mesylate 44 (8.9 g, 24
mmol) in DMF (30 mL) at 0.degree. C. The reaction was allowed to
slowly warm to ambient temperature over 1 h. After 2 h, the
solution was diluted with brine, extracted with diethyl ether,
washed twice with brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated to afford 12 g of crude 45 (the product
contained unreacted acetanilide that co-eluted on TLC) which was
used without further purification.
##STR00024##
[0116]
trans-2R-[2-{3-[Acetyl(2-bromo-5-fluorophenyl)amino]propenyl}]-3-hy-
droxypyrrolidine-1-carboxylic acid tert-butyl ester (46): To a
solution containing crude 45 (11 g, approx., 19 mmol) in THF (30
mL) was added 1M TBAF/THF (25 mL) at ambient temperature. After 1
h, the solution was diluted with EtOAc, washed with 1M HCl, brine,
dried over anhydrous Na.sub.2SO.sub.4, filtered, and concentrated.
The residue was absorbed on silica gel and purified by flash silica
gel chromatography (1:1 hexanes/EtOAc to 5% MeOH/DCM) to afford 4.2
g of alcohol 46 as an orange foam. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta.7.65 (m, 1H), 7.04-7.02 (m, 2H), 5.62 (m, 1H),
5.40-5.34 (m, 1H), 4.74-4.69 (m, 1H), 4.26-4.00 (m, 2H), 3.74-3.38
(m, 3H), 2.69-2.57 (m, 1H), 1.82 (s, 3H), 1.46 (s, 9H) ppm.
##STR00025##
[0117]
trans-2R-[2-(1-Acetyl-6-fluoro-1H-indol-3-ylmethyl)]-3-hydroxypyrro-
lidine-1-carboxylic acid tert-butyl ester (47): To a solution
containing 46 (5.7 g, 12.5 mmol) in DMF (40 mL) was added
K.sub.2CO.sub.3 (1.7 g, 12.3 mmol), sodium formate (0.86 g, 12.7
mmol), tetrabutylammonium chloride (3.5 g, 12.7 mmol), and
Pd(OAc).sub.2 (0.32 g, 1.4 mmol) at ambient temperature. This
reaction mixture was immersed in an oil bath preheated to
90.degree. C. After 4 h, the reaction mixture was cooled in an ice
bath, diluted with brine, extracted with EtOAc, washed twice with
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 4.5 g of crude indole 47 as an orange foam
that was used without further purification.
##STR00026##
[0118]
trans-2R-[2-(6-Fluoro-1H-indol-3-ylmethyl)]-3-hydroxypyrrolidine-1--
carboxylic acid tert-butyl ester (48): To a solution containing
acetate 47 (2.5 g, 6.6 mmol) in MeOH (15 mL) was added 1M NaOH (8
mL) at ambient temperature. After 40 min, the solution was
concentrated, diluted with EtOAc, washed with brine, dried over
anhydrous Na.sub.2SO.sub.4, filtered, and concentrated. The residue
was purified by NP-HPLC (SiO.sub.2, 40% EtOAc/hexanes increasing to
EtOAc over 30 min) to afford 1.3 g of indole 48 as a light yellow
foam. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.8.75 (s, rotomer,
0.5H), 8.71 (s, rotomer, 0.5H), 7.52 (dd, J=9.0, 14.1 Hz, 1H),
7.03-6.81 (m, 3H), 4.15-4.08 (m, 2H), 3.96 (dd, J=3.3, 10.2 Hz,
1H), 3.57-3.33 (m, 2H), 3.22-3.09 (m, 1H), 2.60-2.49 (m, 2H),
2.01-1.91 (m, 1H), 1.79-1.75 (m, 1H), 1.50 (s, 9H) ppm.
##STR00027##
[0119]
trans-2R-[3-Acetoxy-2-(6-fluoro-1H-indol-3-ylmethyl)]pyrrolidine-1--
carboxylic acid tert-butyl ester (49): To a suspension containing
indole 48 (0.35 g, 1.1 mmol) in DCM (10 mL) was added acetic
anhydride (0.15 mL, 1.5 mmol) followed by DMAP (10 mg, 0.08 mmol)
at ambient temperature. After 30 min, the solution became
homogeneous. After 1 h, the solution was diluted with 1M HCl,
extracted with DCM, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated to afford 0.36 g (87%) of 49 as a yellow
oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.8.62 (s, rotomer,
0.5H), 8.57 (s, rotomer, 0.5H), 7.62-7.51 (m, 1H), 7.03 (d, J=7.8
Hz, 1H), 6.98 (s, 1H), 6.90-6.85 (m, 1H), 5.05 (s, 1H), 4.18-4.08
(m, 1H), 3.51-3.11 (m, 3H), 2.90-2.44 (m, 1H), 2.23 (s, 3H),
1.86-1.84 (m, 2H), 1.53 (s, 9H) ppm.
##STR00028##
[0120] trans-2R-[Acetic acid
2-(6-fluoro-1H-indol-3-ylmethyl)]pyrrolidin-3-yl ester (50): To a
solution containing carbamate 49 (0.48 g, 1.3 mmol) in DCM (15 mL)
at 0.degree. C. was added TFA (3 mL). After 15 min, the reaction
was warmed and maintained at ambient temperature for 1 h. The
solution was concentrated, diluted with EtOAc, washed with
saturated NaHCO.sub.3, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated to afford 0.32 g (89%) of amine 50 as an
orange oil that was used without further purification. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.8.25 (s, 1H), 7.52 (dd, J=5.4, 8.7 Hz,
1H), 7.03-6.91 (m, 2H), 6.88 (ddd, J=0.9, 8.7, 17.4 Hz, 1H),
5.01-4.98 (m, 1H), 3.44 (m, 1H), 3.07-3.00 (m, 2H), 2.82 (dd,
J=8.1, 14.7 Hz, 1H), 2.14-2.03 (m, 2H), 2.03 (s, 3H), 1.82-1.79 (m,
1H) ppm.
##STR00029##
[0121] Cbz-protected pyrrolidine (51): A solution containing amine
50 (0.65 g, 2.4 mmol) in DCM (25 mL) was treated with CbzCl (0.35
mL, 2.5 mmol) followed by TEA (0.5 mL, 1.4 mmol) at 0.degree. C.
After 15 min, the solution was warmed to ambient temperature. After
1 h, the reaction mixture was diluted with 1M HCl and extracted
with DCM. The combined organic extracts were dried over
Na.sub.2SO.sub.4, filtered and concentrated. The residual oil was
purified by preparative HPLC (SiO.sub.2, 20-100% EtOAc/hexanes) to
give 0.98 g (100%) of 51 as a yellow oil. .sup.1H NMR (CDCl.sub.3,
300 MHz): .about.1:1 mixture of amide rotamers, .delta.8.27 (s,
1H), 7.62 (app q, J=5.4 Hz, 0.5H), 7.16 (app q, J=5.1 Hz, 0.5H),
7.44-7.37 (m, 5H), 6.89-6.92 (m, 1H), 6.83 (m, 0.5H), 6.65 (m,
0.5H), 5.30-5.16 (m, 2H), 5.09-5.07 (m, 1H), 4.23 (dd, J=3.3, 9 Hx,
0.5H), 4.12 (dd, J=3.6, 9.6 Hz, 0.5H), 3.58-3.45 (m, 2H), 3.30-3.12
(m, 1H), 2.85-2.64 (m, 1H), 1.99-1.86 (m, 5H) ppm.
##STR00030##
[0122] Biindole (52): Indole 51 (0.98 g, 2.4 mmol) was dissolved in
TFA (20 mL) at 0.degree. C. and the reaction was monitored by LC/MS
analysis. After 5 h, the reaction mixture was diluted with cold
saturated K.sub.2CO.sub.3, and extracted with EtOAc. The combined
organic extracts were washed with saturated NaHCO.sub.3 then brine,
dried over anhydrous Na.sub.2SO.sub.4, filtered and concentrated to
give 0.8 g of a yellow oil that was used without further
purification. This oil was diluted with EtOAc (10 mL) and treated
with DDQ (315 mg, 1.4 mmol) at ambient temperature. After 15 min,
the dark green solution was diluted with saturated NaHCO.sub.3, and
extracted with EtOAc. The combined organic extracts were washed
with saturated NaHCO.sub.3, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. The crude residue was
absorbed on SiO.sub.2 gel and purified by flash chromatography
(SiO.sub.2, 2:1 hexanes/EtOAc) to give 0.6 g (61%) of 52 as a light
yellow foam. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.11.2 (s, 1H),
7.51-7.26 (m, 8H), 6.93 (app t, J=8.4 Hz, 1H), 5.36 (s, 2H), 5.24
(s, 1H), 4.17 (d, J=9.9 Hz, 1H), 3.74 (app t, J=9.6 Hz, 1H),
3.62-3.56 (m, 2H), 2.89 (app t, J=14.1 Hz, 1H), 2.24-2.17 (m, 1H),
1.85 (s, 3H) ppm. Mass spectrum, m/z 820.8 (M.sup.+H).sup.+, 842.7
(M.sup.+Na).sup.+.
##STR00031##
[0123] Bis-pyrrolidine (53): To a solution containing biindole 52
(0.6 g, 0.73 mmol) in MeOH (20 mL) was added 10% Pd/C (50 mg). The
reaction mixture was shaken under H.sub.2 using a Parr apparatus.
After 3 h, the mixture was filtered through Celite.RTM., and rinsed
with MeOH and EtOAc. The filtrate was concentrated in vacuo to
afford 0.32 g (80%) of 53 as an off-white solid that was used
without further purification. Mass spectrum, m/z 550.4
(M).sup.+.
##STR00032##
[0124] Boc-protected dimer (54): A solution containing
N-Boc-Thr(Me)-OH (152 mg, 0.65 mmol) in NMP (4 mL) was cooled to
0.degree. C. To this solution was added HATU (224 mg, 0.60 mmol)
followed by DIPEA (0.15 mL, 0.80 mmol). After 5 min, diamine 53
(180 mg, 0.33 mmol) in NMP (5 mL) was added. The reaction mixture
was warmed to room temperature. After 16 h, the reaction mixture
was diluted with EtOAc, washed with 1M HCl, saturated NaHCO.sub.3,
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated to afford 290 mg of 54 as an orange oil that was used
without further purification.
##STR00033##
[0125] Diamine (55): A solution containing 54 (0.29 g, 0.3 mmol) in
DCM (15 mL) was cooled to 0.degree. C. To this solution was added
TFA (3 mL). After 15 min, the reaction mixture was warmed to
ambient temperature. After 1.5 h, the reaction mixture was
concentrated, diluted with EtOAc, washed with saturated
NaHCO.sub.3, dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated to afford 0.19 g (82%) of diamine 55 as a light orange
foam that was used without further purification. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.11.7 (s, 1H), 7.51 (dd, J=1.8, 11.7
Hz, 1H), 7.38-7.28 (m, 1H), 6.93 (app t, J=7.2 Hz, 1H), 5.30 (d,
J=3.3 Hz, 1H), 4.40 (d, J=11.7 Hz, 1H), 4.01 (app t, J=9 Hz, 1H),
3.82 (app q, J=9.9 Hz, 1H), 3.68 (d, J=6.6 Hz, 1H), 3.56-3.50 (m,
1H), 3.46 (s, 3H), 2.92-2.80 (m, 2H), 2.67-2.63 (m, 1H), 2.36-2.29
(m, 1H), 1.85 (s, 3H), 1.26-1.23 (m, 4H) ppm. Mass spectrum, m/z
780.8 (M).sup.+.
##STR00034##
[0126] Boc-protected dipeptide (56): A solution containing
N-Boc-N(Me)Ala-OH (58 mg, 0.28 mmol) in NMP (4 mL) was cooled to
0.degree. C. To this solution was added HATU (106 mg, 0.28 mmol)
followed by DIPEA (0.1 mL, 0.57 mmol). After 5 min, diamine 55 (110
mg, 0.14 mmol) in NMP (5 mL) was added dropwise. The reaction
mixture was warmed to room temperature. After 16 h, the reaction
mixture was diluted with EtOAc, washed with 1M HCl, saturated
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated to afford 126 mg of 56 as an orange oil that was
used without further purification.
##STR00035##
[0127] Dipeptide (57): A solution containing 56 (126 mg, 0.11 mmol)
in DCM (15 mL) was cooled to 0.degree. C. To this solution was
added TFA (3 mL). After 15 min, the reaction was warmed to ambient
temperature. After 1.5 h, the reaction mixture was concentrated,
diluted with EtOAc, washed with saturated NaHCO.sub.3, dried over
anhydrous Na.sub.2SO.sub.4, filtered and concentrated to afford 100
mg (95%) of 57 as an orange oil that was used without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.11.73 (s,
1H), 8.49 (d, J=8.1 Hz, 1H), 7.60 (dd, J=2.1, 9.9 Hz, 1H),
7.39-7.34 (m, 1H), 6.94 (app t, J=9 Hz, 1H), 5.26 (d, J=3.6 Hz,
1H), 4.98 (app q, J=3.6 Hz, 1H), 4.38 (d, J=10.8 Hz, 1H), 4.19 (d,
J=9.6 Hz, 1H), 3.88-3.73 (m, 2H), 3.61-3.56 (m, 1H), 3.45 (s, 3H),
3.15 (app q, J=6.9 Hz, 1H), 2.92-2.80 (m, 1H), 2.56 (s, 3H),
2.35-2.29 (m, 1H), 1.85 (s, 3H), 1.40 (d, J=6.9 Hz, 3H), 1.28-1.24
(m, 6H) ppm. Mass spectrum, m/z 951.0 (M.sup.+H).sup.+.
##STR00036##
[0128] Bis-(3-OH-pyrrolidino)-dipeptide (58): A solution containing
57 (100 mg, 0.11 mmol) in MeOH (10 mL) was treated with 1M NaOH (1
mL) at ambient temperature. After 45 min, the solution was
concentrated, diluted with HOAc and water and purified by RP-HPLC
[Dynamax Microsorb C18 60 .ANG., 8.mu., 41.4 mm.times.25 cm; Flow:
40 mL/min; Detector: 272 nm; Solvent A: water v/v 0.1% HOAc,
Solvent B: ACN v/v 0.1% HOAc; Method: 10-90% B over 30 min]. The
product-containing fractions were combined, frozen, and lyophilized
to afford 40 mg of 58 as a white solid. .sup.1H NMR (CDCl.sub.3,
300 MHz): --4:1 mixture of rotamers, .delta.11.77 (s, 1H), 10.78
(s, minor), 8.20 (d, J=7.8 Hz, 1H), 7.92 (d, J=9.9 Hz, minor), 7.54
(dd, J=1.8, 9.6 Hz, 1H), 7.04 (dd, J=1.8, 9.9 Hz, minor), 7.38-7.25
(m, 2H), 6.92-6.87 (m, 1H), 5.0 (dd, J=3.9, 8.1 Hz, minor), 4.84
(dd, J=3.9, 8.1 Hz, 1H), 4.33 (d, J=2.4 Hz, 1H), 4.23 (d, J=10.8
Hz, 1H), 4.05-3.89 (m, 1H), 3.79-3.74 (m, 1H), 3.55 (app d, J=12.9
Hz, 1H), 3.44 (s, 3H), 3.16-3.05 (m, 2H), 2.82-2.69 (m, 2H),
2.47-2.37 (m, 6H), 2.14-2.08 (m, 1H), 1.94-1.85 (m, 1H), 1.40 (d,
J=6.9 Hz, 1H), 1.28-1.23 (m, 4H) ppm. Mass spectrum, m/z 866.9
(M)+.
[0129] Additional IAP antagonists can be prepared using the
chemistries outlined in the above Schemes employing the synthetic
intermediates described in the following Schemes.
##STR00037##
[0130] 2-Formyl-3-methyl-pyrrolidine-1-carboxylic acid tert-butyl
ester (60): A 500-mL three-necked flask equipped with an overhead
stirrer and nitrogen inlet was charged with a 1M solution of oxalyl
chloride DCM (20.5 mL, 0.041 mol) and anhydrous DCM (100 mL) and
cooled to -78.degree. C. A solution of anhydrous DMSO (3.45 mL,
0.044 mol) in DCM (20 mL) was added dropwise with stirring. After
30 min, alcohol 59 (7.35 g, 0.034 mol).sup.1 was added in DCM (40
mL) in a dropwise fashion. After 30 min, Et.sub.3N (23.7 mL, 0.17
mol) was added resulting in the formation of a white suspension.
The reaction mixture was transferred to a 0.degree. C. ice/water
bath and maintained for 30 min. The reaction mixture was quenched
by the addition of water. The product was extracted with DCM and
the combined organic extracts were washed successively with water,
1M HCl, and brine. The organic phase was dried over anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated to afford 7.05 g (99%)
of aldehyde 60 which was used without further purification. .sup.1H
NMR (CDCl.sub.3, 300 MHz) .delta.9.45 (s, minor rotamer), 9.40 (s,
1H, major rotamer), 3.78-3.35 (m, 3H), 2.3-2.0 (m, 2H), 1.70-1.55
(m, 1H), 1.47 (s, minor rotamer), 1.42 (s, 9H, major rotamer), 1.15
(d, J=6 Hz, 3H) ppm.
[0131] .sup.1 See: Herdeis, C.; Hubmann, H. P. Tetrahedron
Asymmetry 1992, 3, 1213-1221; and, Ohfune, Y.; Tomita, M. J. Am.
Chem. Soc. 1982, 104, 3511-3513.
[0132] 2-(2-Ethoxycarbonyl-ethyl-3-methyl-pyrrolidine-1-carboxylic
acid tert-butyl ester (61): A 500-mL 3-neck round-bottomed flask
was charged with sodium hydride (60%, 1.77 g, 0.044 mol) in
anhydrous THF (100 mL) under nitrogen and cooled to 10.degree. C. A
solution of triethylphosphono acetate (9.15 g, 0.041 mol) in THF
(50 mL) was added drop wise to the NaH/THF suspension. Following
the addition, crude aldehyde 60 (7.25 g, 0.034 mol) in THF (15 mL)
and added in a drop wise fashion. After .about.1 h, the reaction
was complete by TLC analysis [30% EtOAc/Hexanes: R.sub.f(60)=0.7;
R.sub.f(61)=0.75]. The reaction mixture was quenched by the
addition of saturated aqueous NH.sub.4Cl. The product was extracted
with EtOAc, washed with 1M HCl, water, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated to afford 13.3 g of
crude 61 (quant.) which was used without further purification.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.6.8 (m, 1H), 5.82 (m, 1H),
4.2 (m, 2H), 4.0-3.25 (m, 3H), 2.2-1.85 (m, 2H), 1.70-1.55 (m, 1H),
1.47 (s, minor rotamer), 1.42 (s, 9H, major rotamer), 1.15 (d, J=6
Hz, 3H) ppm.
##STR00038##
[0133] 2-(3-hydroxy-propenyl)-3-methyl-pyrrolidine-1-carboxylic
acid tert-butyl ester (62): A solution containing crude 61 (16.7 g,
0.059 mol) in DCM (150 mL) was cooled to -78.degree. C.
BF.sub.3.Et.sub.2O (8.9 mL, 0.07 mol) was added followed by the
dropwise addition of DIBAL (2 M/DCM, 200 mL, 0.4 mol). After 2 h,
TLC analysis indicated complete consumption of the 61 [TLC
analysis: 1:1 hexane/EtOAc, R.sub.f(62)=0.3]. EtOAc (40 mL) was
added and the reaction mixture was warmed to -15.degree. C. The
reaction mixture was carefully quenched with 1M HCl until pH=2. The
product was extracted with DCM. The organic extracts were washed
with 1M HCl, water, and brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated. The crude 62 was
purified by silica gel chromatography (2:1 hexanes/EtOAc) to afford
7.2 g (51%) of 62. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.5.8-5.5
(m, 2H), 4.18 (m, 2H), 4.0-3.25 (m, 3H), 2.2-1.85 (m, 2H), 1.55-1.3
(m, 1H), 1.43 (s, 9H), 1.15 (d, J=6 Hz, 3H) ppm.
##STR00039##
[0134]
2-(3-Methanesulfonyloxy-propenyl)-3-methylpyrrolidine-1-carboxylic
acid tert-butyl ester (63): To a solution containing 62 (6.0 g,
0.025 mol) in DCM (25 mL) at 0.degree. C. was added Et.sub.3N (4.5
mL, 0.032 mol). After 5 min, a solution containing
methanesulfonylchloride (2.33 mL, 0.03 mol) in DCM (5 mL) was added
drop wise. After 2 h, TLC analysis revealed complete consumption of
62 [1:1 hexanes/EtOAc, R.sub.f(63)=0.5; R.sub.f(62)=0.4]. The
reaction mixture was poured onto ice-water and extracted with DCM.
The organic extracts were washed with water, brine, and dried over
anhydrous Na.sub.2SO.sub.4, filtered, and concentrated to afford
7.05 g (89%) of crude 63 as a pale brown oil which was used without
further purification. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta.5.8-5.5 (m, 2H), 4.69 (d, J=6.15 Hz, 2H), 3.85-3.3 (m, 3H),
3.0 (s, 3H), 2.0-1.9 (m, 1H), 1.55-1.30 (m, 1H), 1.40 (s, 9H), 1.0
(d, J=6.74 Hz, 3H) ppm.
[0135]
2-{3-[Acetyl-(2-bromo-5-fluoro-phenyl)-amino]-propenyl}-3-methyl-py-
rrolidine-1-carboxylic acid (64) To a suspension of NaH (60%, 1.44
g, 0.036 mol) in DMF (15 mL) at 0.degree. C. was added a solution
containing 2-bromo-5-fluoroacetanilide (8.35 g, 0.036 mol) in DMF
(10 mL). After 30 min, a solution containing crude 63 (9.58 g, 0.03
mol) in DMF (10 mL) was added and the reaction mixture was warmed
to ambient temperature overnight. The reaction was quenched by
pouring onto the ice-water containing 1M HCl. The product was
extracted with diethyl ether, washed with water, brine, dried over
anhydrous Na.sub.2SO.sub.4, filtered, and concentrated. The product
was purified by flash silica gel chromatography (2:1 hexane/EtOAc)
to afford 5.41 g (45%) of 64 as a pale brown viscous oil. .sup.1H
NMR (CDCl.sub.3, 300 MHz) .delta.7.62 (m, 1H), 7.05 (m, 2H),
5.65-5.25 (m, 2H), 4.9-4.7 (m, 1H), 4.3-4.1 (m, 1H), 3.85-3.3 (m,
4H), 2-1.9 (m, 1H), 1.8 (s, 3H) 1.55-1.3 (m, 1H), 1.43 (s, 9H),
0.96 (d, J=6.15 Hz, 3H) ppm. Mass spectrum, m/z 354.36
(M-Boc).sup.+.
##STR00040##
[0136]
2-(1-Acetyl-6-fluoro-1H-indol-3-ylmethyl)-3-methyl-pyrrolidine-1-ca-
rboxylic acid tert-butyl ester (65): A solution containing 64 (5 g,
0.011 mol), n-Bu.sub.4NCl (3.3 g, 0.012 mol), K.sub.2CO.sub.3 (1.65
g, 0.012 mol), and NaHCO.sub.2 (0.81 g, 0.012 mol) in DMF (20 mL)
was degassed under high vacuum. Palladium acetate (0.49 g, 0.002
mol) was added and the heterogeneous reaction mixture was immersed
in a preheated (80-85.degree. C.) oil bath. After 3 h, TLC analysis
revealed complete consumption of 64 [1:1 hexane/EtOAc,
R.sub.f(64)=0.4, R.sub.f(65)=0.5]. The reaction mixture was cooled
in an ice bath and diethyl ether (100 mL) was added. The mixture
was filtered through Celite.RTM. and the solids were washed with
diethyl ether. The filtrate was washed with water, brine, dried
over anhydrous Na.sub.2SO.sub.4, filtered, and concentrated. The
crude product was purified by normal phase HPLC (10-100%
EtOAc/hexane over 50 min) to afford 2.2 g (54%) of 65 as brown,
viscous oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.8.22-8.1 (m,
1H), 7.7-7.5 (m, 1H), 7.15-6.97 (m, 2H), 3.8-2.65 (m, 4H), 2.6 (s,
3H), 2.12-1.85 (m, 1H), 1.62 (s, 1H), 1.42 (s, 9H, major rotamer),
1.4 (s, minor rotamer), 0.9 (d, J=6 Hz, 3H) ppm. Mass spectrum,
m/z=274.5 (M-BOC).sup.+.
[0137]
2-{6-Fluoro-1H-indol-3-ylmethyl)-3-methyl-pyrrolidin-1-carboxylic
acid tert-butyl ester (66): To a solution containing 65 (2.2 g,
0.006 mol) in MeOH (15 mL) was added 1M NaOH (6 mL, 0.006 mol) at
0.degree. C. After 30 min, TLC analysis revealed complete
consumption of 65 [EtOAc/hexanes 1:1, R.sub.f(65)=0.6;
R.sub.f(66)=0.5]. The solvent was removed in vacuo and the residue
was dissolved in EtOAc. The organic phase was washed with 1M HCl,
water, brine, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 2.11 g (quant.) of crude 66 which was used
in the next step without further purification. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.9.0 (s, 1H, major rotamer), 8.85 (s,
minor rotamer), 7.62-7.5 (m, 1H), 7.1-6.72 (m, 3H), 3.8-2.7 (m,
5H), 2.15-1.3 (m, 3H), 1.55 (s, 9H), 0.85 (d, J=7 Hz, 3H) ppm.
[0138] 6-Fluoro-3-(3-methyl-pyrrolidin-2-ylmethyl)-1H-indole (67):
To solution containing 66 (0.89 g, 0.0024 mol) in DCM (20 mL) at
0.degree. C. was added TFA (4 mL). After 2 h, TLC analysis revealed
complete consumption of 66 [10% MeOH/DCM, Rf(66)=0.7,
R.sub.f(67)=0.3]. The reaction mixture was concentrated in vacuo,
diluted with DCM, washed with aqueous NaHCO.sub.3, brine, dried
over anhydrous Na.sub.2SO.sub.4, filtered, and concentrated to
afford 0.6 g (86%) of 67 which was used without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.9.0 (br s,
1H), 7.6-7.35 (m, 1H), 7.1-6.7 (m, 3H), 4.2 (br m, 1H), 3.2-2.5 (m,
5H), 2.1-1.2 (m, 3H), 1.05 (d, J=6.74 Hz, 3H) ppm.
##STR00041##
[0139]
2-{3-[Acetyl-(3-bromo-pyridin-2-yl)-amino]-propenyl}-4-(tert-butyl--
dimethyl-silanyloxy)-pyrrolidine-1-carboxylic acid benzyl ester
(69): Under a nitrogen atmosphere at 0.degree. C., NaH (0.89 g,
23.0 mmol) was added in portions to a solution containing
2-acetylamino-3-bromopyridine (4.12 g, 19.2 mmol) in DMF (30 mL).
After 15 min at 0.degree. C. for and 1 h at ambient temperature the
reaction mixture was recooled to 0.degree. C. and a solution
containing 68 (8.99 g, 19.2 mmol) in DMF (10 mL) was added
dropwise. The reaction mixture was then stirred at ambient
temperature for 2 h at which point TLC analysis revealed complete
consumption of 68 [1:1 hexanes/EtOAc, R.sub.f(68)=0.6;
R.sub.f(69)=0.3]. The reaction mixture was cooled to 0.degree. C.
followed by the dropwise addition of saturated aqueous NH.sub.4Cl.
The product was extracted with diethyl ether. The combined ether
extracts were washed with water, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. The crude product was
purified by flash silica gel chromatography (20% EtOAc/hexanes) to
afford 6.0 g (54%) of 69 as an white solid. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.7.4-7.2 (m, 5H), 5.6-5.4 (m, 2H), 5.0
(s, 2H), 4.4-4.2 (m, 4H), 3.5-3.2 (m, 2H), 1.8 (s, 3H), 1.6 (s,
2H), 0.9 (s, 6H), 0.1 (s, 9H) ppm.
##STR00042##
[0140]
4-Acetoxy-2-(1-acetyl-1H-pyrrolo[2,3-b]pyridine-3-ylmethyl)-pyrroli-
dine-1-carboxylic acid benzyl ester (70): Under a nitrogen
atmosphere, a solution containing 69 (5.92 g, 10.1 mmol) in
anhydrous DMF (50 mL) was charged with (n-Bu).sub.4NCl (2.8 g, 10.1
mmol), K.sub.2CO.sub.3 (1.4 g, 10.1 mmol), NaHCO.sub.2 (0.68 g,
10.1 mmol), and Pd(OAc).sub.2 (0.045 g, 0.20 mmol) at ambient
temperature. The heterogeneous mixture was immersed in a pre-heated
(85.degree. C.) oil bath. After 3 h, TLC analysis revealed some 69
remained therefore additional catalyst (0.01 g) was added. After an
additional 1 h of heating, 69 was completely consumed by TLC
analysis [1:1 EtOAc/hexanes, R.sub.f(69)=0.3; Rf(70)=0.8]. The warm
reaction mixture was cooled in an ice bath then diluted with
diethyl ether and filtered through a pad of celite. The solids were
washed with diethyl ether and the filtrate was washed several times
with water to remove excess DMF, then washed once with brine, dried
over anhydrous Na.sub.2SO.sub.4, filtered, and concentrated to
afford 5.1 g of crude 70 which was purified by flash silica gel
chromatography (20% EtOAc/hexanes) to afford 3.0 g (59%) of 70 as a
white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.5.18 (m, 1H),
7.60 (m, 1H), 7.18 (m, 1H), 7.05 (dt, J=2.4, 8.7 Hz, 1H), 4.13 (m,
1H), 3.41 (m, 1H), 3.33 (m, 2H), 3.17 (app dd, J=14.1, 38.1 Hz,
1H), 2.61 (s, 3H), 1.83 (m, 3H), 1.69 (m, 1H), 1.49 (s, 9H)
ppm.
##STR00043##
[0141]
2-(1-Acetyl-1H-pyrrolo[2,3-b]pyridine-3-ylmethyl)-4-hydroxy-pyrroli-
dine-1-carboxylic acid benzyl ester (71): To a solution containing
70 (2.99 g, 5.88 mmol) in THF (20 mL) at 0.degree. C. was added a
solution of TBAF (1 M in THF, 11.8 mL, 11.8 mmol) in a dropwise
fashion. After 1.5 h, TLC analysis revealed complete consumption of
70 [1:1 hexanes/EtOAc, R.sub.f(70)=0.64; R.sub.f(71)=0.3]. The
solvent was removed in vacuo and the residue was dissolved in EtOAc
and washed with water, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated to afford 2.11 g of
crude 71 which was used without further purification.
##STR00044##
[0142]
4-Hydroxy-2-(1H-pyrrolo[2,3-b]pyridin-3-ylmethyl)-pyrrolidine-1-car-
boxylic acid benzyl ester (72): To a solution containing 71 (2.11
g, 5.36 mmol) in MeOH (30 mL) at 0.degree. C. was added 1M NaOH
(8.1 mL, 8.05 mmol) in a dropwise fashion. After 1 h, TLC analysis
revealed complete consumption of 71 [EtOAc, R.sub.f(71)=0.4;
R.sub.f(72)=0.2]. The MeOH was removed in vacuo and the residue was
dissolved in EtOAc, washed with dilute aqueous HCl, water, brine,
dried over anhydrous Na.sub.2SO.sub.4, filtered and concentrated to
afford 1.99 g of crude 72 which was used in the next step without
further purification.
##STR00045##
[0143]
4-(4-Nitro-benzoyloxy)-2-(1H-pyrrolo[2,3-b]pyridine-3-ylmethyl)-pyr-
rolidine-1-carboxylic acid benzyl ester (73): To a solution
containing 72 (1.99 g, 5.66 mmol), p-nitrobenzoic acid (1.23 g,
7.36 mmol), and Ph.sub.3P (2.07 g, 7.92 mmol) in THF (35 mL) at
0.degree. C. was added DIAD (1.6 mL, 8.2 mmol). After the addition
was complete, the ice bath was removed and the reaction mixture was
stirred at ambient temperature for 2 hat which point TLC analysis
revealed complete consumption of 72 [EtOAc, R.sub.f(72)=0.2;
R.sub.f(73)=0.6]. The solvent was removed in vacuo and the residue
was dissolved in EtOAc, washed with saturated aqueous NaHCO.sub.3,
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 7 g of crude 73 which was purified by flash
silica gel chromatography (20% EtOAc/hexanes) to obtained 2.68 g of
73 (95%) as a white solid .sup.1H NMR (CDCl.sub.3, 300 MHz):
.delta.8.3 (d, J=35 Hz, 2H), 7.6 (d, J=35 Hz, 2H), 7.2 (m, 5H), 7.0
(s, 1H), 5.2 (s, 2H), 4.4-3.2 (m, 3H), 3.0-2.9 (m, 1H), 2.2 (s,
2H), 1.9 (s, 2H) ppm.
##STR00046##
[0144]
4-Hydroxy-2-(1H-pyrrolo[2,3-b]pyridine-3-ylmethyl)-pyrrolidine-1-ca-
rboxylic acid benzyl ester (74): To a solution containing 73 (2.8
g, 5.6 mmol) in a 3:1 mixture of MeOH/DCM (40 mL) at 0.degree. C.
was added 1N NaOH (8.5 mL) and the reaction mixture was stirred at
ambient temperature for 15 min when TLC analysis revealed complete
consumption of 73 [1:1 EtOAc/hexanes; R.sub.f(73)=0.3;
R.sub.f(74)=0.02]. The solvent was removed in vacuo and the residue
was dissolved in EtOAc, washed with dilute aqueous HCl, water,
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated to afford 2.7 g of crude 74 which was purified by
flash silica gel chromatography (50% EtOAc/hexanes) to obtained 1.6
g of 74 (94%) as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz):
.delta.8.5 (m, 2H), 7.4 (s, 5H), 7.0 (m, 2H), 5.2 (s, 2H), 4.3 (s,
1H), 4.2 (m, 1H), 3.65-3.8 (m, 1H), 3.5-3.3 (m, 2H), 3.2-3.0 (m,
1H), 1.9-2.0 (m, 3H) ppm.
##STR00047##
TABLE-US-00001 TABLE 1 R11a/ R12a/ R13a/ Kd Compound R1a R2a R3a
R14a R14b R3b R2b R1b R11b R12b R13b .mu.M A Me S--Me S--(2R--
S--OH S--OH S--(2R-- S--Me Me H F H A MeCHOMe) MeCHOMe) B Me
S--CH.sub.2OH S--(2R-- S--OH S--OH S--(2R-- S--CH.sub.2OH Me H F H
A MeCHOMe) MeCHOMe) C Me S--Me S--tBu S--OH S--OH S--tBu S--Me Me H
F H A D Me S--Et S--tBu S--OH S--OH S--tBu S--Et Me H F H A E Et
S--Me S--(2R-- S--OH S--OH S--(2R-- S--Me Et H F H A MeCHOMe)
MeCHOMe) F Me S--Et S--(2R-- S--OH S--OH S--(2R-- S--Et Me H F H A
MeCHOMe) MeCHOMe) G Me S--Me S--(2R-- S--OMe S--OMe S--(2R-- S--Me
Me H F H A MeCHOMe) MeCHOMe) H Me S--Et S--(2R-- S--OMe S--OMe
S--(2R-- S--Et Me H F H A MeCHOMe) MeCHOMe) I Me S--Me S--tBu
S--OMe S--OMe S--tBu S--Me Me H F H A J Me S--Et S--tBu S--OMe
S--OMe S--tBu S--Et Me H F H B K Et S--Me S--(2R-- S--OMe S--OMe
S--(2R-- S--Me Et H F H A MeCHOMe) MeCHOMe) L Et S--Me S--tBu
S--OMe S--OMe S--tBu S--Me Et H F H A M Me S--Me S--(2R-- S--Me
S--Me S--(2R-- S--Me Me H F H A MeCHOMe) MeCHOMe)
[0145] The binding affinities of the compounds listed in Table 1 to
an IAP were determined substantially as described by
Nikolovska-Coleska, Z. et. al. (Analytical Biochemistry (2004),
vol. 332:261-273) using a variety of fluorogenic substrates and is
reported as a Kd value. Briefly, various concentrations of IAP
antagonists were mixed with 5 nM fluorescently labeled peptide
(AbuRPF-K(5-Fam)-NH.sub.2) and 40 nM of an IAP-BIR3 for 15 min at
RT in 100 mL of 0.1M Potassium Phosphate buffer, pH 7.5 containing
100 mg/ml bovine g-globulin. Following incubation, the polarization
values (mP) were measured on a Victor2V using a 485 nm excitation
filter and a 520 nm emission filter. IC50 values were determined
from the plot using nonlinear least-squares analysis using GraphPad
Prism. The compounds described herein afford Kd values in the
ranges of: Kd<0.1 .mu.M (A), Kd=0.1-1 .mu.M (B), and Kd=1-10
.mu.M (C). The reported Kd values are the lower of the Kd for XIAP
BIR-3 and cIAP-1 BIR-3.
[0146] The following compound of the invention was also made and
tested. The reported Kd value is the lower of the Kd for XIAP BIR-3
and cIAP-1 BIR-3.
##STR00048##
TABLE-US-00002 TABLE 4 R1a/ R2a/ R3a/ R17a/ R12a/ Kd Compound R1b
R2b R3b R17b R12b (.mu.M) N Me Me R-- (S)--OH 6-F B (Me)CHOMe
[0147] In mammalian cells, activation of the caspases is achieved
through at least two independent mechanisms which are initiated by
distinct caspases, but result in the activation of common
executioner (effector) caspases. In addition to the cytochrome c
activated mechanism (sometimes referred to as the `intrinsic death
pathway`) is a mechanism by which the caspase cascade is activated
via activation of a death receptor located on the cell membrane
(sometimes referred to as the `extrinsic death pathway`). Examples
of death receptors include CD-95 and TNF-R1 (as well as other
members of the TNF group of cytokine receptors). The corresponding
ligands are CD-95L and TNF-alpha, respectfully. Binding of
pro-caspase-8 to the death receptor induces auto-activation wherein
the inhibitory pro-domain of pro-caspase-8 is cleaved and removed.
Caspase-8 is released from the receptor and can then activate
effector caspases (caspase-3, -6, -7), and, as in the caspase-9
initiated pathway, the result is the proteolytic cleavage of
cellular targets by the effector caspases and the induction of
apoptosis.
[0148] The present invention is directed generally to Smac
peptidomimetics and the uses of Smac peptidomimetics. In one
embodiment the Smac peptidomimetics act as chemopotentiating
agents. The term "chemopotentiating agent" refers to an agent that
acts to increase the sensitivity of an organism, tissue, or cell to
a chemical compound, or treatment namely "chemotherapeutic agents"
or "chemo drugs" or radiation treatment. One embodiment of the
invention is the therapeutic composition of a Smac peptidomimetic.
A further embodiment of the invention is the therapeutic
composition of a Smac peptidomimetic, which can act as a
chemopotentiating agent (herein referred to as Smac mimetic), and a
biological or chemotherapeutic agent or radiation. Another
embodiment of the invention is a method of inhibiting tumor growth
in vivo by administering a Smac peptidomimetic. Another embodiment
of the invention is a method of inhibiting tumor growth in vivo by
administering a Smac mimetic and a biologic or chemotherapeutic
agent or chemoradiation. Another embodiment of the invention is a
method of treating a patient with a cancer by administering Smac
mimetics of the present invention alone or in combination with a
chemotherapeutic agent or chemoradiation.
[0149] In an embodiment of the present invention, the cells are in
situ, in an individual, and the contacting step is effected by
administering a pharmaceutical composition comprising a
therapeutically effective amount of the Smac mimetic wherein the
individual may be subject to concurrent or antecedent radiation or
chemotherapy for treatment of a neoproliferative pathology. The
pathogenic cells are of a tumor such as, but not limited to,
bladder cancer, breast cancer, prostate cancer, lung cancer,
pancreatic cancer, gastric cancer, colon cancer, ovarian cancer,
renal cancer, hepatoma, melanoma, lymphoma, sarcoma, and
combinations thereof.
[0150] As described in U.S. Pat. No. 7,244,851, IAP antagonists can
be used for the treatment of all cancer types which fail to undergo
apoptosis. Examples of such cancer types include neuroblastoma,
intestine carcinoma such as rectum carcinoma, colon carcinoma,
familiary adenomatous polyposis carcinoma and hereditary
non-polyposis colorectal cancer, esophageal carcinoma, labial
carcinoma, larynx carcinoma, hypopharynx carcinoma, tong carcinoma,
salivary gland carcinoma, gastric carcinoma, adenocarcinoma,
medullary thyroidea carcinoma, papillary thyroidea carcinoma, renal
carcinoma, kidney parenchym carcinoma, ovarian carcinoma, cervix
carcinoma, uterine corpus carcinoma, endometrium carcinoma, chorion
carcinoma, pancreatic carcinoma, prostate carcinoma, testis
carcinoma, breast carcinoma, urinary carcinoma, melanoma, brain
tumors such as glioblastoma, astrocytoma, meningioma,
medulloblastoma and peripheral neuroectodermal tumors, Hodgkin
lymphoma, non-Hodgkin lymphoma, Burkitt lymphoma, acute lymphatic
leukemia (ALL), chronic lymphatic leukemia (CLL), acute myeloid
leukemia (AML), chronic myeloid leukemia (CML), adult T-cell
leukemia lymphoma, hepatocellular carcinoma, gall bladder
carcinoma, bronchial carcinoma, small cell lung carcinoma,
non-small cell lung carcinoma, multiple myeloma, basalioma,
teratoma, retinoblastoma, choroidea melanoma, seminoma, rhabdomyo
sarcoma, craniopharyngeoma, osteosarcoma, chondrosarcoma,
myosarcoma, liposarcoma, fibrosarcoma, Ewing sarcoma and
plasmocytoma.
[0151] In addition to apoptosis defects found in tumors, defects in
the ability to eliminate self-reactive cells of the immune system
due to apoptosis resistance are considered to play a key role in
the pathogenesis of autoimmune diseases. Autoimmune diseases are
characterized in that the cells of the immune system produce
antibodies against its own organs and molecules or directly attack
tissues resulting in the destruction of the latter. A failure of
those self-reactive cells to undergo apoptosis leads to the
manifestation of the disease. Defects in apoptosis regulation have
been identified in autoimmune diseases such as systemic lupus
erthematosus or rheumatoid arthritis.
[0152] In an embodiment the pathogenic cells are those of any
autoimmune disease or diseases which are resistant to apoptosis due
to the expression of IAPs or members of the Bcl-2 family. Examples
of such autoimmune diseases are collagen diseases such as
rheumatoid arthritis, systemic lupus erythematosus, Sharp's
syndrome, CREST syndrome (calcinosis, Raynaud's syndrome,
esophageal dysmotility, telangiectasia), dermatomyositis,
vasculitis (Morbus Wegener's) and Sjogren's syndrome, renal
diseases such as Goodpasture's syndrome, rapidly-progressing
glomerulonephritis and membrano-proliferative glomerulonephritis
type II, endocrine diseases such as type-I diabetes, autoimmune
polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED),
autoimmune parathyroidism, pernicious anemia, gonad insufficiency,
idiopathic Morbus Addison's, hyperthyreosis, Hashimoto's
thyroiditis and primary myxedema, skin diseases such as pemphigus
vulgaris, bullous pemphigoid, herpes gestationis, epidermolysis
bullosa and erythema multiforme major, liver diseases such as
primary biliary cirrhosis, autoimmune cholangitis, autoimmune
hepatitis type-1, autoimmune hepatitis type-2, primary sclerosing
cholangitis, neuronal diseases such as multiple sclerosis,
myasthenia gravis, myasthenic Lambert-Eaton syndrome, acquired
neuromyotony, Guillain-Barre syndrome (Muller-Fischer syndrome),
stiff-man syndrome, cerebellar degeneration, ataxia, opsoklonus,
sensoric neuropathy and achalasia, blood diseases such as
autoimmune hemolytic anemia, idiopathic thrombocytopenic purpura
(Morbus Werlhof), infectious diseases with associated autoimmune
reactions such as AIDS, Malaria and Chagas disease.
[0153] The subject compositions encompass pharmaceutical
compositions comprising a therapeutically effective amount of a
Smac mimetic in dosage form and a pharmaceutically acceptable
carrier, wherein the Smac mimetic inhibits the activity of an
Inhibitor of Apoptosis protein (IAP), thus promoting apoptosis.
Another embodiment of the present invention are compositions
comprising a therapeutically effective amount of a Smac mimetic in
dosage form and a pharmaceutically acceptable carrier, in
combination with a chemotherapeutic and/or radiotherapy, wherein
the Smac mimetic inhibits the activity of an Inhibitor of Apoptosis
protein (IAP), thus promoting apoptosis and enhancing the
effectiveness of the chemotherapeutic and/or radiotherapy.
[0154] In an embodiment of the invention a therapeutic composition
for promoting apoptosis can be a therapeutically effective amount
of a Smac peptidomimetic which binds to at least one IAP. In one
embodiment the IAP can be XIAP. In another embodiment the IAP can
be ML-IAP. In another embodiment the IAP can cIAP-1 or cIAP-2. In a
further embodiment the IAP can be multiple IAP types.
[0155] Embodiments of the invention also include a method of
treating a patient with a condition in need thereof wherein
administration of a therapeutically effective amount of a Smac
peptidomimetic is delivered to the patient, and the Smac
peptidomimetic binds to at least one IAP. In one embodiment the IAP
can be XIAP. In another embodiment the IAP can be ML-IAP. In
another embodiment the IAP can cIAP-1 or cIAP-2. In a further
embodiment the IAP can be multiple IAP types.
[0156] The method may further include the concurrent administration
of another chemotherapeutic agent. The chemotherapeutic agent can
be, but is not limited to, alkylating agents, antimetabolites,
anti-tumor antibiotics, taxanes, hormonal agents, monoclonal
antibodies, glucocorticoids, mitotic inhibitors, topoisomerase I
inhibitors, topoisomerase II inhibitors, immunomodulating agents,
cellular growth factors, cytokines, and nonsteroidal
anti-inflammatory compounds.
[0157] Administration of Smac peptidomimetics The Smac
peptidomimetics can be administered in effective amounts. An
effective amount is that amount of a preparation that alone, or
together with further doses, produces the desired response. This
may involve only slowing the progression of the disease
temporarily, although preferably, it involves halting the
progression of the disease permanently or delaying the onset of or
preventing the disease or condition from occurring. This can be
monitored by routine methods. Generally, doses of active compounds
would be from about 0.01 mg/kg per day to 1000 mg/kg per day. It is
expected that doses ranging from 50-500 mg/kg will be suitable,
preferably intravenously, intramuscularly, or intradermally, and in
one or several administrations per day. The administration of the
Smac peptidomimetic can occur simultaneous with, subsequent to, or
prior to chemotherapy or radiation so long as the chemotherapeutic
agent or radiation sensitizes the system to the Smac
peptidomimetic.
[0158] In general, routine experimentation in clinical trials will
determine specific ranges for optimal therapeutic effect for each
therapeutic agent and each administrative protocol, and
administration to specific patients will be adjusted to within
effective and safe ranges depending on the patient condition and
responsiveness to initial administrations. However, the ultimate
administration protocol will be regulated according to the judgment
of the attending clinician considering such factors as age,
condition and size of the patient, the Smac peptidomimetic
potencies, the duration of the treatment and the severity of the
disease being treated. For example, a dosage regimen of the Smac
peptidomimetic can be oral administration of from 1 mg to 2000
mg/day, preferably 1 to 1000 mg/day, more preferably 50 to 600
mg/day, in two to four (preferably two) divided doses, to reduce
tumor growth. Intermittent therapy (e.g., one week out of three
weeks or three out of four weeks) may also be used.
[0159] In the event that a response in a subject is insufficient at
the initial doses applied, higher doses (or effectively higher
doses by a different, more localized delivery route) may be
employed to the extent that the patient tolerance permits. Multiple
doses per day are contemplated to achieve appropriate systemic
levels of compounds. Generally, a maximum dose is used, that is,
the highest safe dose according to sound medical judgment. Those of
ordinary skill in the art will understand, however, that a patient
may insist upon a lower dose or tolerable dose for medical reasons,
psychological reasons or for virtually any other reason.
[0160] Embodiments of the invention also include a method of
treating a patient with cancer by promoting apoptosis wherein
administration of a therapeutically effective amount of a Smac
peptidomimetic, and the Smac peptidomimetic binds to at least one
IAP. In one embodiment the IAP can be XIAP. In another embodiment
the IAP can be ML-IAP. In another embodiment the IAP can cIAP-1 or
cIAP-2. In a further embodiment the IAP can be multiple IAP types.
The method may further include concurrent administration of a
chemotherapeutic agent. The chemotherapeutic agent can be, but is
not limited to, alkylating agents, antimetabolites, anti-tumor
antibiotics, taxanes, hormonal agents, monoclonal antibodies,
glucocorticoids, mitotic inhibitors, topoisomerase I inhibitors,
topoisomerase II inhibitors, immunomodulating agents, cellular
growth factors, cytokines, and nonsteroidal anti-inflammatory
compounds.
[0161] Routes of administration A variety of administration routes
are available. The particular mode selected will depend, of course,
upon the particular chemotherapeutic drug selected, the severity of
the condition being treated and the dosage required for therapeutic
efficacy. The methods of the invention, generally speaking, may be
practiced using any mode of administration that is medically
acceptable, meaning any mode that produces effective levels of the
active compounds without causing clinically unacceptable adverse
effects. Such modes of administration include, but are not limited
to, oral, rectal, topical, nasal, intradermal, inhalation,
intra-peritoneal, or parenteral routes. The term "parenteral"
includes subcutaneous, intravenous, intramuscular, or infusion.
Intravenous or intramuscular routes are particularly suitable for
purposes of the present invention.
[0162] In one aspect of the invention, a Smac peptidomimetic as
described herein, with or without additional biological or
chemotherapeutic agents or radiotherapy, does not adversely affect
normal tissues, while sensitizing tumor cells to the additional
chemotherapeutic/radiation protocols. While not wishing to be bound
by theory, it would appear that because of this tumor specific
induced apoptosis, marked and adverse side effects such as
inappropriate vasodilation or shock are minimized. Preferably, the
composition or method is designed to allow sensitization of the
cell or tumor to the chemotherapeutic or radiation therapy by
administering at least a portion of the Smac peptidomimetic prior
to chemotherapeutic or radiation therapy. The radiation therapy,
and/or inclusion of chemotherapeutic agents, may be included as
part of the therapeutic regimen to further potentiate the tumor
cell killing by the Smac peptidomimetic.
[0163] Pharmaceutical compositions In one embodiment of the
invention, an additional chemotherapeutic agent (infra) or
radiation may be added prior to, along with, or following the Smac
peptidomimetic. The term "pharmaceutically-acceptable carrier" as
used herein means one or more compatible solid or liquid fillers,
diluents or encapsulating substances which are suitable for
administration into a human. The term "carrier" denotes an organic
or inorganic ingredient, natural or synthetic, with which the
active ingredient is combined to facilitate the application. The
components of the pharmaceutical compositions also are capable of
being co-mingled with the molecules of the present invention, and
with each other, in a manner such that there is no interaction
which would substantially impair the desired pharmaceutical
efficacy.
[0164] The delivery systems of the invention are designed to
include time-released, delayed release or sustained release
delivery systems such that the delivering of the Smac
peptidomimetic occurs prior to, and with sufficient time, to cause
sensitization of the site to be treated. A Smac peptidomimetic may
be used in conjunction with radiation and/or additional anti-cancer
chemical agents (infra). Such systems can avoid repeated
administrations of the Smac peptidomimetc compound, increasing
convenience to the subject and the physician, and may be
particularly suitable for certain compositions of the present
invention.
[0165] Many types of release delivery systems are available and
known to those of ordinary skill in the art. They include polymer
base systems such as poly(lactide-glycolide), copolyoxalates,
polycaprolactones, polyesteramides, polyorthoesters,
polyhydroxybutyric acid, and polyanhydrides. Microcapsules of the
foregoing polymers containing drugs are described in, for example,
U.S. Pat. No. 5,075,109. Delivery systems also include non-polymer
systems that are: lipids including sterols such as cholesterol,
cholesterol esters and fatty acids or neutral fats such as mono-di-
and tri-glycerides; hydrogel release systems; sylastic systems;
peptide based systems; wax coatings; compressed tablets using
conventional binders and excipients; partially fused implants; and
the like. Specific examples include, but are not limited to: (a)
erosional systems in which the active compound is contained in a
form within a matrix such as those described in U.S. Pat. Nos.
4,452,775, 4,667,014, 4,748,034 and 5,239,660 and (b) diffusional
systems in which an active component permeates at a controlled rate
from a polymer such as described in U.S. Pat. Nos. 3,832,253, and
3,854,480. In addition, pump-based hardware delivery systems can be
used, some of which are adapted for implantation.
[0166] Use of a long-term sustained release implant may be
desirable. Long-term release, are used herein, means that the
implant is constructed and arranged to deliver therapeutic levels
of the active ingredient for at least 30 days, and preferably 60
days. Long-term sustained release implants are well-known to those
of ordinary skill in the art and include some of the release
systems described above.
[0167] The pharmaceutical compositions may conveniently be
presented in unit dosage form and may be prepared by any of the
methods well known in the art of pharmacy. All methods include the
step of bringing the active agent into association with a carrier
that constitutes one or more accessory ingredients. In general, the
compositions are prepared by uniformly and intimately bringing the
active compound into association with a liquid carrier, a finely
divided solid carrier, or both, and then, if necessary, shaping the
product.
[0168] Compositions suitable for parenteral administration
conveniently comprise a sterile aqueous preparation of a
chemopotentiating agent (e.g. Smac peptidomimetic), which is
preferably isotonic with the blood of the recipient. This aqueous
preparation may be formulated according to known methods using
suitable dispersing or wetting agents and suspending agents. The
sterile injectable preparation also may be a sterile injectable
solution or suspension in a non-toxic parenterally-acceptable
diluent or solvent, for example, as a solution in 1,3-butane diol.
Among the acceptable vehicles and solvents that may be employed are
water, Ringer's solution, and isotonic sodium chloride solution. In
addition, sterile, fixed oils are conventionally employed as a
solvent or suspending medium. For this purpose any bland fixed oil
may be employed including synthetic mono- or di-glycerides. In
addition, fatty acids such as oleic acid may be used in the
preparation of injectables. Carrier formulation suitable for oral,
subcutaneous, intravenous, intramuscular, etc. administrations can
be found in Remington's Pharmaceutical Sciences, Mack Publishing
Co., Easton, Pa. which is incorporated herein in its entirety by
reference thereto.
[0169] Additional chemotherapeutic agents Chemotherapeutic agents
suitable, include but are not limited to the chemotherapeutic
agents described in "Modern Pharmacology with Clinical
Applications", Sixth Edition, Craig & Stitzel, Chpt. 56, pg
639-656 (2004), herein incorporated by reference. This reference
describes chemotherapeutic drugs to include alkylating agents,
antimetabolites, anti-tumor antibiotics, plant-derived products
such as taxanes, enzymes, hormonal agents such as glucocorticoids,
miscellaneous agents such as cisplatin, monoclonal antibodies,
immunomodulating agents such as interferons, and cellular growth
factors. Other suitable classifications for chemotherapeutic agents
include mitotic inhibitors and nonsteroidal anti-estrogenic
analogs. Other suitable chemotherapeutic agents include
toposiomerase I and II inhibitors and kinase inhibitors.
[0170] Specific examples of suitable biological and
chemotherapeutic agents include, but are not limited to, cisplatin,
carmustine (BCNU), 5-fluorouracil (5-FU), cytarabine (Ara-C),
gemcitabine, methotrexate, daunorubicin, doxorubicin,
dexamethasone, topotecan, etoposide, paclitaxel, vincristine,
tamoxifen, TNF-alpha, TRAIL, interferon (in both its alpha and beta
forms), thalidomide, and melphalan. Other specific examples of
suitable chemotherapeutic agents include nitrogen mustards such as
cyclophosphamide, alkyl sulfonates, nitrosoureas, ethylenimines,
triazenes, folate antagonists, purine analogs, pyrimidine analogs,
anthracyclines, bleomycins, mitomycins, dactinomycins, plicamycin,
vinca alkaloids, epipodophyllotoxins, taxanes, glucocorticoids,
L-asparaginase, estrogens, androgens, progestins, luteinizing
hormones, octreotide actetate, hydroxyurea, procarbazine, mitotane,
hexamethylmelamine, carboplatin, mitoxantrone, monoclonal
antibodies, levamisole, interferons, interleukins, filgrastim and
sargramostim. Chemotherapeutic compositions also comprise other
members, i.e., other than TRAIL, of the TNF superfamily of
compounds.
[0171] Radiotherapy protocols Additionally, in several method
embodiments of the present invention the Smac peptidomimetic
therapy may be used in connection with chemo-radiation or other
cancer treatment protocols used to inhibit tumor cell growth.
[0172] For example, but not limited to, radiation therapy (or
radiotherapy) is the medical use of ionizing radiation as part of
cancer treatment to control malignant cells is suitable for use in
embodiments of the present invention. Although radiotherapy is
often used as part of curative therapy, it is occasionally used as
a palliative treatment, where cure is not possible and the aim is
for symptomatic relief. Radiotherapy is commonly used for the
treatment of tumors. It may be used as the primary therapy. It is
also common to combine radiotherapy with surgery and/or
chemotherapy. The most common tumors treated with radiotherapy are
breast cancer, prostate cancer, rectal cancer, head & neck
cancers, gynecological tumors, bladder cancer and lymphoma.
Radiation therapy is commonly applied just to the localized area
involved with the tumor. Often the radiation fields also include
the draining lymph nodes. It is possible but uncommon to give
radiotherapy to the whole body, or entire skin surface. Radiation
therapy is usually given daily for up to 35-38 fractions (a daily
dose is a fraction). These small frequent doses allow healthy cells
time to grow back, repairing damage inflicted by the radiation.
Three main divisions of radiotherapy are external beam radiotherapy
or teletherapy, brachytherapy or sealed source radiotherapy and
unsealed source radiotherapy, which are all suitable examples of
treatment protocol in the present invention. The differences relate
to the position of the radiation source; external is outside the
body, while sealed and unsealed source radiotherapy has radioactive
material delivered internally. Brachytherapy sealed sources are
usually extracted later, while unsealed sources are injected into
the body. Administration of the Smac peptidomimetic may occur prior
to, concurrently with the treatment protocol. Annexin V/Propidium
Iodide Staining--To show the ability of Smac mimetics to induce
apoptosis, Annexin V-fluorescein isothiocyanate staining was
performed as per manufacturer's protocol (Invitrogen, Carlsbad,
Calif.). Briefly, cells were exposed to various concentrations of
Smac mimetics for 18-24 hrs. and then removed from the assay plate
by trypsinization. Cells were then pelleted and resuspended in
assay buffer (supplied by manufacturer). Annexin V and propidium
iodide were added to the cell preparations and incubated for 1 hour
in the dark at room temperature. Following the incubation
additional buffer (200 .mu.l) was then added to each tube, and the
samples were analyzed immediately by flow cytometry. In the
presence of Smac mimetics apoptosis was strongly promoted, as
assessed by annexin/PI staining and analyzed by flow cytometry. The
amplification in the number of apoptotic cells (Annexin V
positive/propidium iodide negative-lower right quadrant) by IAP
antagonists as compared to control was dose dependent and due to
the induction of apoptosis and not via increasing the proportion of
necrotic cells.
[0173] Biological and chemotherapeutics/anti-neoplastic agents and
radiation induce apoptosis by activating the extrinsic or intrinsic
apoptotic pathways, and, since Smac mimetics relieve inhibitors of
apoptotic proteins (IAPs) and, thus, remove the block in apoptosis,
the combination of chemotherapeutics/anti-neoplastic agents and
radiation with Smac mimetics should work synergistically to
facilitate apoptosis.
[0174] The relevance of this potent synergy is that it makes
possible the use of the Smac peptidomimetics, which are IAP
antagonists, to improve the efficacy of the marketed platinum
containing compounds (cisplatin and carboplatin). This may be
accomplished by lowering the required dose of the poorly tolerated
platinum containing compounds and/or by improving the response rate
at the marketed dose.
The present invention is not limited to the embodiments described
and exemplified above, but is capable of variation and modification
within the scope of the appended claims.
* * * * *