U.S. patent application number 13/152644 was filed with the patent office on 2011-12-01 for iap binding compounds.
This patent application is currently assigned to TETRALOGIC PHARMACEUTICALS CORPORATION. Invention is credited to Stephen M. Condon, Yijun Deng, Matthew G. LaPorte, Susan R. Rippin.
Application Number | 20110294827 13/152644 |
Document ID | / |
Family ID | 35907930 |
Filed Date | 2011-12-01 |
United States Patent
Application |
20110294827 |
Kind Code |
A1 |
Condon; Stephen M. ; et
al. |
December 1, 2011 |
IAP BINDING COMPOUNDS
Abstract
IAP binding molecules and compositions including these are
disclosed. The IAP binding molecules interact with IAPs (inhibitor
of apoptosis proteins) in cells and may be used to modify apoptosis
in cells treated with such molecules. Embodiments of these
compounds have a K.sub.d of less that 0.1 micromolar. Methods of
using these IAP binding molecules for therapeutic, diagnostic, and
assay purposes are also disclosed.
Inventors: |
Condon; Stephen M.;
(Glenmoore, PA) ; LaPorte; Matthew G.;
(Honeybrook, PA) ; Deng; Yijun; (Dresher, PA)
; Rippin; Susan R.; (Wilmington, DE) |
Assignee: |
TETRALOGIC PHARMACEUTICALS
CORPORATION
Malvern
PA
|
Family ID: |
35907930 |
Appl. No.: |
13/152644 |
Filed: |
June 3, 2011 |
Related U.S. Patent Documents
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
|
|
12248494 |
Oct 9, 2008 |
7968590 |
|
|
13152644 |
|
|
|
|
11184503 |
Jul 15, 2005 |
7456209 |
|
|
12248494 |
|
|
|
|
60588050 |
Jul 15, 2004 |
|
|
|
Current U.S.
Class: |
514/255.05 ;
435/375; 514/337; 514/365; 514/411; 514/414; 514/422; 540/454;
540/460; 544/405; 546/279.1; 548/204; 548/468; 548/525;
548/540 |
Current CPC
Class: |
A61P 43/00 20180101;
C07D 491/147 20130101; C07D 491/04 20130101; C07K 5/06034 20130101;
C07D 409/14 20130101; C07D 417/14 20130101; A61P 25/28 20180101;
A61P 35/00 20180101; A61P 37/00 20180101; C07D 207/08 20130101;
C07D 207/12 20130101; C07D 405/14 20130101; C07D 491/14 20130101;
C07D 491/18 20130101; C07D 207/09 20130101; C07D 498/16 20130101;
C07D 401/14 20130101; C07K 5/06026 20130101; C07D 207/10 20130101;
A61K 31/395 20130101; C07D 403/06 20130101; C07D 405/06
20130101 |
Class at
Publication: |
514/255.05 ;
548/468; 548/525; 546/279.1; 548/204; 544/405; 540/460; 540/454;
548/540; 514/414; 514/422; 514/337; 514/365; 514/411; 435/375 |
International
Class: |
A61K 31/497 20060101
A61K031/497; C07D 405/06 20060101 C07D405/06; C07D 405/14 20060101
C07D405/14; C07D 417/14 20060101 C07D417/14; C07D 491/16 20060101
C07D491/16; C07D 498/16 20060101 C07D498/16; C07D 207/12 20060101
C07D207/12; A61K 31/4045 20060101 A61K031/4045; A61K 31/4025
20060101 A61K031/4025; A61K 31/4439 20060101 A61K031/4439; A61K
31/427 20060101 A61K031/427; A61K 31/407 20060101 A61K031/407; A61P
35/00 20060101 A61P035/00; C12N 5/071 20100101 C12N005/071; C07D
403/06 20060101 C07D403/06 |
Claims
1-7. (canceled)
8. The compound of claim 26 or a pharmaceutically acceptable salt
thereof that has a K.sub.d for IAP of less than about 1
micromolar.
9. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where A.sub.1 is H, methyl, or ethyl.
10. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where R.sub.1a is H; R.sub.1b is methyl or ethyl.
11. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where Y is an alkyl group of 1 to 10 carbon atoms, a
branched alkyl group of 1 to 10 carbon atoms, an alkynyl group, a
cycloalkyl group of 3 to 7 carbon atoms, optionally substituted
versions of these groups, hydroxy substituted versions of these
groups.
12. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where Z.sub.1a and Z.sub.1b are independently an H,
hydroxy, amino, alkylamino, dialkylamino, alkoxy, aryloxy, or
heteroaryloxy.
13. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where M is an alkyl or an alkylene of 1 to 5 carbon
atoms.
14. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where R.sub.10 is: ##STR00071## and R.sub.3, R'.sub.3,
R.sub.4, R.sub.5, R'.sub.5, are each independently H, alkyl,
cycloalkyl, alkylene, aryl, heteroaryl, alkoxy optionally
substituted alkyl, cycloalkyl, alkylene, aryl, heteroaryl, halo,
cyano, --(CH.sub.2).sub.pC(.dbd.O)OH,
--(CH.sub.2).sub.pC(.dbd.O)O-alkyl, or --(CH.sub.2).sub.pC
(.dbd.O)NH.sub.2 and where p is independently the integer 0, 1, 2,
or 3.
15. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where R.sub.10 is anyone of structures (4a), (4b), (4c) or
(4d): ##STR00072## where X.sub.2 is a heteroatom and independently
groups R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17 is H, halogen, alkyl, alkynyl, aryl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, aryloxy or heteroaryloxy; independently R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
H, optionally-substituted alkyl, aryl, alkenyl, alkynyl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy;
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 are acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups.
16. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where R.sub.10 has the structure of formula (4a):
##STR00073## where X.sub.2 is a heteroatom and independently groups
R.sub.11, R.sub.12, or any of R.sub.14-17 is H, or optional
substituents including halogen, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, hydroxyl, alkoxy, amino, alkylamino, dialkylamino,
alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy independently
R.sub.11, R.sub.12, or any of R.sub.14-17 are H,
optionally-substituted alkyl, aryl, alkenyl, alkynyl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, aryloxy, or heteroaryloxy; independently R.sub.11,
R'.sub.11, R.sub.12, or any of R.sub.14-17 are acyl or acetyl
groups, carboxylate, sulfonate, sulfone, imine, or oxime
groups.
17. The compound of claim 26 or a pharmaceutically acceptable salt
thereof that has a K.sub.d for IAP of less than about 0.1
micromolar.
18. (canceled)
19. A method of treating cells comprising: administering to cells
that have a proliferation disorder, an amount of the IAP binding
compound of claim 26 or a pharmaceutically acceptable salt thereof
that reduces the cellular proliferation disorder in the sample of
cells.
20. The method of claim 19 where the IAP binding compound or
pharmaceutically acceptable salt thereof has an EC.sub.50 of less
than about 1 micromolar.
21. The method of claim 19 where the IAP binding compound or
pharmaceutically acceptable salt thereof has an EC.sub.50 of less
than about 0.06 micromolar.
22. The method of claim 21 where the compound or pharmaceutically
acceptable salt thereof has a K.sub.d for IAP of less that about
0.1 micromolar.
23. A compound of formula (2): ##STR00074## or a pharmaceutically
acceptable salt thereof wherein: A.sub.1 and A.sub.2 are
independently hydrogen, alkyl, aryl, or alkylaryl, R.sub.1a is H or
a methyl; R.sub.1b is an alkyl or aryl; X.sub.1 is --O--, --S--,
--CH.sub.2--, or --NH--, and J is --CH--, or --N--, provided that
when J is --N--, X.sub.1 is --CH.sub.2--, or --NH--; Y is H, or an
alkyl; Z is --OH, aryloxy, alkoxy, benzyloxy, benzyloxy, amino,
arylamino, alkylamino, benzylamino; R.sub.2 is a detectable label
or is: ##STR00075## M is alkylene, alkenylene, alkynlene,
heteroalkylene, heteroalkenylene, or heteroalkynlene, G is selected
from a bond, --O--; --N(R.sub.2d)-- where R.sub.2d is H, alkyl,
cycloalkyl, or aryl; or --S(O).sub.m-- where m is 0, 1, or 2;
R.sub.10 is cycloalkyl, aryl, heterocycloalkyl, heterocycloalkenyl,
or heteroaryl; and n is independently the integer 0, 1, 2, 3, 4, or
5.
24. A compound of formula (3): ##STR00076## or a pharmaceutically
acceptable salt thereof where A.sub.1 is H, lower alkyl, or
optionally-substituted lower alkyl; R.sub.1a and R.sub.1b are
separately H, lower alkyl, optionally-substituted lower alkyl,
lower alkylene, optionally substituted lower alkylene; or A.sub.1
together with either R.sub.1a or R.sub.1b form an optionally
substituted heterocycloalkyl of 3 to 6 atoms; Y is H, an alkyl
group, an alkynyl group, a cycloalkyl group of 3 to 7 carbon atoms,
aryl, heteroaryl, arylalkyl, optionally-substituted versions of
these groups, hydroxy substituted versions of these groups, or Y
together with Z, M, G, or R.sub.10 forms a carbocyclic ring, or a
heterocyclic ring containing 1 to 5 heteroatoms, where Y is linked
to Z, M, G, or R.sub.10; Z is H, alkyl, hydroxy, amino, alkylamino,
diakylamino, alkoxy, cycloalkyl, cycloalkyloxy, aryl, heteroaryl,
aryloxy, or heteroaryloxy; or Z together with Y, M, G, or R.sub.10
form a carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Z is linked to Y, M, G, or R.sub.10; M is an
optionally-substituted alkyl, alkenyl, or alkynyl; an
optionally-substituted alkyl, alkenyl, or alkynyl of 1 to 5 carbon
atoms; an optionally-substituted alkylene, alkenylene, or
alkynylene; or an optionally-substituted alkylene, alkenylene, or
alkynylene of 1 to 5 carbon atoms; G is a bond, a heteroatom,
--(C.dbd.O)--; --S(O).sub.t-- where t=0, 1, or 2; --NR.sub.18--;
--NCOR.sub.18--; or --NS(O).sub.xR.sub.18-- where x=0, 1, or 2, and
R.sub.18 is lower alkyl, optionally-substituted lower alkyl, or
cycloalkyl or R.sub.18 is contained within a carbocyclic, or
heterocyclic ring containing 1 to 5 heteroatoms, where R.sub.18 is
linked to Z, M, or R.sub.10; and R.sub.10 is an aryl, a heteroaryl,
a fused aryl, a fused heteroaryl; or R.sub.10 is any one of
structures (4a), (4b), (4c) or (4d): ##STR00077## where X.sub.2 is
a heteroatom and independently R.sub.11, R'.sub.11, R.sub.12, any
of R.sub.13-17, or any of R.sub.14-17 is H, halogen, alkyl,
alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
sulfonate, aryloxy or heteroaryloxy; independently R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 is
H, optionally-substituted alkyl, alkenyl, alkynyl, aryl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy; or
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 is acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 is
contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z, M, G, R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any
of R.sub.14-17.
25. The compound of claim 24: or a pharmaceutically acceptable salt
thereof where A.sub.1 is H, lower alkyl, or optionally-substituted
lower alkyl; R.sub.1a and R.sub.1b are separately H, lower alkyl,
optionally-substituted lower alkyl, lower alkylene, optionally
substituted lower alkylene; or A.sub.1 together with either
R.sub.1a or R.sub.1b form an optionally substituted
heterocycloalkyl of 3 to 6 atoms; Y is H, an alkyl group, an
alkynyl group, a cycloalkyl group of 3 to 7 carbon atoms, aryl,
heteroaryl, arylalkyl, optionally-substituted versions of these
groups, hydroxy substituted versions of these groups, or Y together
with Z, M, G, or R.sub.10 forms a carbocyclic ring, or a
heterocyclic ring containing 1 to 5 heteroatoms, where Y is linked
to Z, M, G, or R.sub.10; Z is H, alkyl, hydroxy, amino, alkylamino,
diakylamino, alkoxy, cycloalkyl, cycloalkyloxy, aryl, heteroaryl,
aryloxy, or heteroaryloxy; or Z together with Y, M, G, or R.sub.10
form a carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Z is linked to Y, M, G, or R.sub.10; M is an
optionally-substituted alkyl, alkenyl, or alkynyl; an
optionally-substituted alkyl, alkenyl, or alkynyl of 1 to 5 carbon
atoms; an optionally-substituted alkylene, alkenylene, or
alkynylene; or an optionally-substituted alkylene, alkenylene, or
alkynylene of 1 to 5 carbon atoms; G is a bond, a heteroatom,
--(C.dbd.O)--; --S(O).sub.t-- where t=0, 1, or 2; --NR.sub.18--;
--NCOR.sub.18--; or --NS(O).sub.xR.sub.18-- where x=0, 1, or 2, and
Rig is lower alkyl, optionally-substituted lower alkyl, or
cycloalkyl or Rig is contained within a carbocyclic, or
heterocyclic ring containing 1 to 5 heteroatoms, where R.sub.18 is
linked to Z, M, or R.sub.10; and R.sub.10 is any one of structures
(4a), (4b), (4c) or (4d): ##STR00078## where X.sub.2 is a
heteroatom and independently R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 is H, halogen, alkyl, alkenyl,
alkynyl, aryl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkyloxyalkyl, sulfonate, aryloxy or
heteroaryloxy; independently R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 is H, optionally-substituted
alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
aryloxy, or heteroaryloxy; or independently R.sub.11, R'.sub.11,
R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 is acyl or
acetyl groups, carboxylate, sulfonate, sulfone, imine, or oxime
groups; or groups R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 is contained within a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, and linked to groups at position Y, Z, M, G, R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17.
26. A compound of formula (5) ##STR00079## or a pharmaceutically
acceptable salt thereof. where A.sub.1 is H, or lower alkyl, or
A.sub.1 and R.sub.1b together form a ring of 3-5 atoms; R.sub.1a is
H; R.sub.1b is lower alkyl, or together with A.sub.1 forms a ring
of 3 to 5 atoms; Y is an alkyl group, an alkynyl group, a
cycloalkyl group of 3 to 7 carbon atoms, optionally substituted
versions of these groups, hydroxy substituted versions of these
groups, or Y together with Z.sub.1a, Z.sub.1b, or R.sub.10 forms a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Y is linked to Z.sub.1a, Z.sub.1b, or R.sub.10;
Z.sub.1a and Z.sub.1b are independently an H, hydroxy, amino,
alkylamino, diakylamino, alkoxy, aryloxy, or heteroaryloxy; or
Z.sub.1a, Z.sub.1b, together with Y or R.sub.10 form a carbocyclic
ring, or a heterocyclic ring containing 1 to 5 heteroatoms, where
Z.sub.1a or Z.sub.1b, is linked to Y or R.sub.10; M is an
optionally-substituted alkyl or an optionally-substituted alkylene
of 1 to 5 carbon atoms; G is a bond, a heteroatom, --(C.dbd.O)--;
--NR.sub.18--; --NCOR.sub.18--; or --NS(O).sub.xR.sub.18-- where
x=0, 1, or 2, and R.sub.18 is lower alkyl, optionally-substituted
lower alkyl; and R.sub.10 is aryl, a heteroaryl, or R.sub.10 is
anyone of structures (4a), (4b), (4c) or (4d): ##STR00080## where
X.sub.2 is a heteroatom and independently R.sub.11, R'.sub.11,
R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are H, halogen,
alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
sulfonate, aryloxy or heteroaryloxy; independently R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
H, optionally-substituted alkyl, aryl, alkenyl, alkynyl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy;
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 are acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z.sub.1a, Z.sub.1b, M, G, R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17.
27. The Compound of claim 26 or a pharmaceutically acceptable salt
thereof where A.sub.1 is H, or lower alkyl; R.sub.1a is H; R.sub.1b
is lower alkyl; Y is an alkyl group, a cycloalkyl group of 3 to 7
carbon atoms, optionally substituted versions of these groups,
hydroxy substituted versions of these groups; Z.sub.1a and Z.sub.1b
are independently an H, hydroxy, alkoxy, aryloxy, or heteroaryloxy;
M is an optionally-substituted alkyl or an optionally-substituted
alkylene of 1 to 5 carbon atoms; G is a bond, a heteroatom, or
--NCOR.sub.18-- and R.sub.18 is lower alkyl, optionally-substituted
lower alkyl; and R.sub.10 is anyone of structures (4a), (4b), (4c)
or (4d): ##STR00081## where X.sub.2 is a heteroatom and
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 are H, halogen, alkyl, alkenyl, alkynyl, aryl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy;
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 are H, optionally-substituted alkyl, aryl,
alkenyl, alkynyl, heteroaryl, hydroxyl, alkoxy, polyalkylether,
amino, alkylamino, dialkylamino, alkyloxyalkyl, aryloxy, or
heteroaryloxy; independently R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 are acyl or acetyl groups,
carboxylate, sulfonate, sulfone, imine, or oxime groups; or groups
R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17 are contained within a carbocyclic ring, or a
heterocyclic ring containing 1 to 5 heteroatoms, and linked to
groups at position Y, Z.sub.1a, Z.sub.1b, M, G, R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17.
28. The compound of claim 26 or a pharmaceutically acceptable salt
thereof where A.sub.1 is H, or methyl; R.sub.1a is H; R.sub.1b is
methyl or ethyl; Y is an alkyl group, a cycloalkyl group of 3 to 7
carbon atoms, optionally substituted versions of these groups, or
hydroxy substituted versions of these groups; Z.sub.1a and Z.sub.1b
are independently an H, hydroxy, or alkoxy; M is a methyl; G is a
bond; and R.sub.10 is aryl, a heteroaryl, or R.sub.10 is any one of
structures (4a) or (4b): ##STR00082## where X.sub.2 is a heteroatom
and independently R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 are H, halogen, alkyl, alkenyl,
alkynyl, aryl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkyloxyalkyl, sulfonate, aryloxy or
heteroaryloxy; independently R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 are H, optionally-substituted
alkyl, aryl, alkenyl, alkynyl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
aryloxy, or heteroaryloxy; independently R.sub.11, R'.sub.11,
R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are acyl or
acetyl groups, carboxylate, sulfonate, sulfone, imine, or oxime
groups; or groups R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 are contained within a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, and linked to groups at position Y, Z.sub.1a,
Z.sub.1b, M, G, R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17,
or any of R.sub.14-17.
29. The compound of claim 28 or a pharmaceutically acceptable salt
thereof, in which R.sub.10 is: ##STR00083##
30. (canceled)
31. A pharmaceutical composition comprising a compound of claim 24,
or a pharmaceutically acceptable salt thereof and a
pharmaceutically acceptable carrier.
32. The pharmaceutical composition of claim 31 comprising a
compound of claim 25, or a pharmaceutically acceptable salt thereof
and a pharmaceutically acceptable carrier.
33. A pharmaceutical composition comprising a compound of claim 26,
or a pharmaceutically acceptable salt thereof and a
pharmaceutically acceptable carrier.
34. The pharmaceutical composition of claim 33 comprising a
compound of claim 27, or a pharmaceutically acceptable salt thereof
and a pharmaceutically acceptable carrier.
35. The pharmaceutical composition of claim 33 comprising a
compound of claim 28, or a pharmaceutically acceptable salt thereof
and a pharmaceutically acceptable carrier.
36. The pharmaceutical composition of claim 33 comprising a
compound of claim 29, or a pharmaceutically acceptable salt thereof
and a pharmaceutically acceptable carrier.
Description
CROSS REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of U.S. Provisional
Application No. 60/588,050, filed Jul. 15, 2004; and U.S.
application Ser. No. 11/184,503, filed Jul. 15, 2005; and U.S.
application Ser. No. 12/248,494, filed Oct. 9, 2008 incorporated by
reference herein.
BACKGROUND
[0002] Apoptosis, programmed cell death, plays a central role in
the development and homeostasis of all multi-cellular organisms.
Alterations in apoptotic pathways have been implicated in many
types of human pathologies, including developmental disorders,
cancer, autoimmune diseases, as well as neuro-degenerative
disorders.
[0003] Programmed cell death pathways have become targets for the
development of therapeutic agents. In some cases because it is
easier to destroy diseased cells rather than to sustain them,
anti-cancer therapies using pro-apoptotic agents such as
conventional radiation and chemo-therapy have been used to trigger
activation of the mitochondria-mediated apoptotic pathways.
However, these therapies lack molecular specificity, and more
specific molecular targets are needed.
[0004] Apoptosis is executed primarily by activated caspases, a
family of cysteine proteases with aspartate specificity in their
substrates. Caspases are produced in cells as catalytically
inactive zymogens and must be proteolytically processed to become
active proteases during apoptosis. In normal surviving cells that
have not received an apoptotic stimulus, most caspases remain
inactive. Even if some caspases are aberrantly activated, their
proteolytic activity can be fully inhibited by a family of
evolutionarily conserved proteins called IAPs (inhibitors of
apoptosis proteins) (Deveraux & Reed, Genes Dev. 13: 239-252,
1999). Each of the IAPs contains 1-3 copies of the so-called BM
(baculoviral IAP repeat) domain and directly interacts with and
inhibits the enzymatic activity of mature caspases. Several
distinct mammalian IAPs including XIAP, survivin, and LIVIN/ML-IAP,
(Kasof and, mes, J. Biol. Chem. 276: 3238-3246, 2001; Vuc/ic et al.
Curr. Biol. 10: 1359-1366, 2000; Ashhab et al. FEBS Lett. 495:
56-60, 2001), have been identified and they exhibit anti-apoptotic
activity in cell culture (Deveraux & Reed, 1999, supra). As
IAPs are expressed in most cancer cells, they may directly
contribute to tumor progression and subsequent resistance to drug
treatment.
[0005] In normal cells signaled to undergo apoptosis, however, the
IAP-mediated inhibitory effect must be removed, a process at least
in part performed by a mitochondrial protein named Smac, second
mitochondria-derived activator of caspases; (Du et al. Cell 102:
33-42, 2000) or DIABLO (direct IAP binding protein with low pI;
Verhagen et al. Cell 102: 43-53, 2000). Smac/DIABLO, synthesized in
the cytoplasm, is targeted to the inter-membrane space of
mitochondria. Upon apoptotic stimuli, Smac is released from
mitochondria back into the cytosol, together with cytochrome c.
Whereas cytochrome c induces multimerization of Apaf-1 to activate
procaspase-9 and procaspase-3, Smac eliminates the inhibitory
effect of multiple IAPs. Smac interacts with all IAPs that have
been examined to date, including XIAP, c-IAP1, c-IAP2, ML-IAP, and
survivin. Smac appears to be a regulator of apoptosis in mammals.
In addition to the inhibition of caspases, overexpressed IAPs can
function to bind Smac and prevent it from binding to XIAP and
releasing caspases (Vucic et. al., Biochem. J. 385 (Pt 1):11-20,
2005).
[0006] Smac is synthesized as a precursor molecule of 239 amino
acids; the N-terminal 55 residues serve as the mitochondria
targeting sequence that is removed after import. The mature form of
Smac contains 184 amino acids and behaves as an oligomer in
solution. Smac and various fragments of it have been proposed for
use as targets for identification of therapeutic agents. The
biological activity of Smac is believed to be related to binding of
its N-terminal four residues to a featured surface groove in a
portion of XIAP referred to as the BIR3 domain. This binding
prevents XIAP from exerting its apoptosis-suppressing function in
the cell. The N-terminal tetrapeptides from IAP binding proteins of
the Drosophila pro-apoptotic proteins Hid, Grim and Reaper are
believed to function in the same manner.
[0007] Commonly-owned co-pending International Application No.
PCT/US02/17342, filed May 31, 2002 and incorporated herein by
reference in its entirety, discloses assays for use in high
throughput screening of agents that bind to a BIR domain of an IAP,
thereby relieving IAP-mediated suppression of apoptosis. The assays
utilize a labeled IAP-binding peptide or peptidomimetic that binds
to a BIR domain of an IAP, wherein at least one measurable feature
of the label changes as a function of the IAP binding compound
being bound to the IAP or free in solution. The BIR domain of an
IAP is contacted with the labeled IAP peptide or peptidomimetic to
form a complex, and the complex is exposed to a compound to be
tested for BIR binding. Displacement of the labeled IAP peptide or
peptidomimetic from the complex, if any, by the test compound, is
measured.
[0008] Disadvantages in the use of peptides for in vivo
administration as diagnostic or therapeutic agents may include
their short half-life due to proteolytic degradation of the peptide
in the body, low absorption through intestinal walls, potential
immunogenic reactions, as well as expense involved in peptide
synthesis. It would be beneficial to prepare non-peptidic IAP
binding compounds that have comparable biological activity of
bioactive peptides, but possess improved pharmacological properties
and are easier or less expensive to synthesize.
[0009] In connection with the Smac tetrapeptides it would be a
significant advance in the art to develop IAP-binding compounds
which may be used to promote apoptosis, while also having the
improved properties associated with non-peptide compounds. Such
compounds can be used as diagnostic and therapeutic agents in the
treatment of apoptosis related conditions.
SUMMARY OF THE INVENTION
[0010] An embodiment of the present invention is a compound, or
composition comprising a compound, of the general formula (2):
##STR00001##
wherein: A.sub.1 and A.sub.2 are independently hydrogen, alkyl,
aryl, or alkylaryl group, R.sub.1a is H or a methyl group; R.sub.1b
is an alkyl or aryl group; X.sub.1 is --O--, --S--, --CH.sub.2--,
or --NH-- group, and J is --CH--, or --N-- group, provided that
when J is --N--, X.sub.1 is --CH.sub.2--, or --NH-- group; Y is H,
or an alkyl group; Z is --OH, aryloxy, alkoxy, benzyloxy,
benzyloxy, amino, arylamino, alkylamino, benzylamino group; R.sub.2
is a detectable label or is:
##STR00002##
M is alkylene, alkenylene, alkynlene, heteroalkylene,
heteroalkenylene, or heteroalkynlene group, G is selected from a
bond, --O--; --N(R.sub.2d)-- where R.sub.2d is H, alkyl,
cycloalkyl, or aryl; or --S(O).sub.m-- where m is 0, 1, or 2; and
R.sub.10 is cycloalkyl, aryl, heterocycloalkyl, heterocycloalkenyl,
or heteroaryl; n is independently the integer 0, 1, 2, 3, 4, or
5.
[0011] Another embodiment of the present invention is a compound,
or composition including a compound, of the general formula
(3):
##STR00003##
where A.sub.1 is H, lower alkyl, or optionally-substituted lower
alkyl group; R.sub.1a and R.sub.1b are separately H, lower alkyl,
optionally-substituted lower alkyl, lower alkylene, optionally
substituted lower alkylene group; or A.sub.1 together with either
R.sub.1a or R.sub.1b form an optionally substituted
heterocycloalkyl group of 3 to 6 atoms; Y is H, an alkyl group, an
alkynyl group, a cycloalkyl group of 3 to 7 carbon atoms, aryl,
heteroaryl, arylalkyl, optionally-substituted versions of these
groups, hydroxy substituted versions of these groups, or Y together
with Z, M, G, or R.sub.10 forms a carbocyclic ring, or a
heterocyclic ring containing 1 to 5 heteroatoms, where Y is linked
to Z, M, G, or R.sub.10; Z is H, alkyl, hydroxy, amino, alkylamino,
diakylamino, alkoxy, cycloalkyl, cycloalkyloxy, aryl, heteroaryl,
aryloxy, or heteroaryloxy group; or Z together with Y, M, G, or
R.sub.10 form a carbocyclic ring, or a heterocyclic ring containing
1 to 5 heteroatoms, where Z is linked to Y, M, G, or R.sub.10; M is
an optionally-substituted alkyl, alkenyl, or alkynyl group; an
optionally-substituted alkyl, alkenyl, or alkynyl group of 1 to 5
carbon atoms; an optionally-substituted alkylene, alkenylene, or
alkynylene group; or an optionally-substituted alkylene,
alkenylene, or alkynylene group of 1 to 5 carbon atoms; G is a
bond, a heteroatom, --(C.dbd.O)--; --S(O).sub.t-- where t=0, 1, or
2; --NR.sub.18--; --NCOR.sub.18--; or --NS(O).sub.xR.sub.18-- where
x=0, 1, or 2, and R.sub.18 is lower alkyl, optionally-substituted
lower alkyl, or cycloalkyl or R.sub.18 is contained within a
carbocyclic, or heterocyclic ring containing 1 to 5 heteroatoms,
where R.sub.18 is linked to Z, M, or R.sub.10; R.sub.10 is an aryl,
a heteroaryl group, a fused aryl, a fused heteroaryl group; or
R.sub.10 is any one of structures (4a), (4b), (4c) or (4d):
##STR00004##
where X.sub.2 is a heteroatom and independently groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 is
H, halogen, alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl,
alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy; independently
R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17 is H, optionally-substituted alkyl, alkenyl, alkynyl,
aryl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy;
or independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17,
or any of R.sub.14-17 is acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 is
contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z, M, G, R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any
of R.sub.14-17.
[0012] Another embodiment is compound, or a composition comprising
a compound, of the general formula (5)
##STR00005##
where A.sub.1 is H, or lower alkyl; R.sub.1a is H; R.sub.1b is
lower alkyl group; Y is an alkyl group, a cycloalkyl group of 3 to
7 carbon atoms, optionally substituted versions of these groups,
hydroxy substituted versions of these groups; Z.sub.1a and Z.sub.1b
are independently an H, hydroxy, alkoxy, aryloxy, or heteroaryloxy
group; M is an optionally-substituted alkyl or an
optionally-substituted alkylene group of 1 to 5 carbon atoms; G is
a bond, a heteroatom, or --NCOR.sub.18-- and Rig is lower alkyl,
optionally-substituted lower alkyl group; R.sub.10 is anyone of
structures (4a), (4b), (4c) or (4d):
##STR00006##
where X.sub.2 is a heteroatom and independently groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
H, halogen, alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl,
alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy; independently
R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17 are H, optionally-substituted alkyl, aryl, alkenyl,
alkynyl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy;
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 are acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z.sub.1a, Z.sub.1b, M, G, R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17.
[0013] In a preferred embodiment the present invention is compound,
or a composition comprising a compound, of the general formula
(5)
##STR00007##
where A.sub.1 is H, or lower alkyl; R.sub.1a is H; R.sub.1b is
lower alkyl group; Y is an alkyl group, a cycloalkyl group of 3 to
7 carbon atoms, optionally substituted versions of these groups,
hydroxy substituted versions of these groups; Z.sub.1a and Z.sub.1b
are independently an H, hydroxy, alkoxy, aryloxy, or heteroaryloxy
group; M is an optionally-substituted alkyl or an
optionally-substituted alkylene group of 1 to 5 carbon atoms; G is
a bond, a heteroatom, or --NCOR.sub.18-- and Rig is lower alkyl,
optionally-substituted lower alkyl group; R.sub.10 is anyone of
structures (4a), (4b), (4c) or (4d):
##STR00008##
where X.sub.2 is a heteroatom and independently groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
H, halogen, alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl,
alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy; independently
R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17 are H, optionally-substituted alkyl, aryl, alkenyl,
alkynyl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy;
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 are acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 are
contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z.sub.1a, Z.sub.1b, M, G, R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17. Even more preferably, X.sub.2
is nitrogen.
[0014] Further embodiments of the present invention include
molecules and compositions that may be useful to modify or regulate
apoptosis in cells. These IAP binding molecules can bind to a
variety of IAP's (Inhibitor of Apoptosis Proteins). These molecules
may be monomers or dimers and may also include a detectable label
or therapeutic moiety and can be formulated as pharmaceutical or
diagnostic compositions containing these molecules. Methods for
using these compounds as therapeutic and diagnostic agents are also
described.
[0015] The IAP binding molecules of the present invention, which
can also be referred to as IAP binding cargo molecules, can
permeate, be transfected, or otherwise be actively or passively
transported into cells and can be used to displace IAPs from other
proteins like caspases or Smac in cells. At least a portion of the
IAP binding-cargo molecule binds to a BIR domain of an IAP. The IAP
binding cargo molecule may provide a therapeutic effect for a cell
proliferation disorder and can include additional therapeutic,
diagnostic, or other substituents in the molecule. Embodiments of
the IAP binding molecules include derivatives of pyrrolidine that
bind to a BIR domain of an IAP.
[0016] Embodiments of the present invention include IAP binding
cargo molecules and pharmaceutically acceptable salts thereof
having the general structure of formula (2):
##STR00009##
wherein: A.sub.1 and A.sub.2 can independently be hydrogen, alkyl,
aryl, or alkylaryl group, R.sub.1a can be H or a methyl group;
R.sub.1b may be an alkyl or aryl group, in some embodiments
R.sub.1b is methyl, ethyl, n-propyl, isopropyl, or ethenyl group;
X.sub.1 can be --O--, --S--, --CH.sub.2--, or --NH-- group, and J
can be --CH--, or --N-- group, provided that when J is --N--,
X.sub.1 is --CH.sub.2--, or an --NH-- group; Y can be H, or an
alkyl group; Z can be H, --OH, aryloxy, alkoxy, benzyloxy, amino,
arylamino, alkylamino, benzylamino group, in some embodiments Z is
--OH, aryloxy, alkoxy, benzyloxy, benzyloxy, amino, arylamino,
alkylamino, benzylamino group; R.sub.2 can include a detectable
label or can be:
##STR00010##
where R.sub.2a can be an aryl, cycloalkyl, optionally substituted
aralkyl, or cycloalkylalkyl group; R.sub.2b can be H or alkyl
group, R.sub.2c can be aryl, cycloalkyl, optionally substituted
aralkyl, or cycloalkylalkyl, heterocycloalkyl, heterocycloalkenyl,
heteroaryl, or cycloalkylaryl group. In some embodiments R.sub.2c
is tetrahydronaphthyl or substituted tetrahydronaphthyl group, most
preferably R.sub.2c is
##STR00011##
Chiral carbons (i*) for (i*=3 to 8) may independently have an (R)
or (S) configuration; M can be alkylene, alkenylene, alkynlene,
heteroalkylene, heteroalkenylene, heteroalkynlene group, in some
embodiments M is:
##STR00012##
[0017] In some embodiments G can be selected from a bond (i.e., G
is absent), --O--; --N(R.sub.2d)-- where R.sub.2d can be H, alkyl,
cycloalkyl, or aryl; or --S(O).sub.m-- where m is 0, 1, or 2;
[0018] R.sub.10 can be cycloalkyl, aryl, heterocycloalkyl,
heterocycloalkenyl, or heteroaryl; in some embodiments R.sub.10
is:
##STR00013##
where R.sub.3, R'.sub.3, R.sub.4, R.sub.5, R'.sub.5, R.sub.6,
R.sub.7, R.sub.8 and R.sub.9 can each independently H, methyl,
ethyl, n-propyl, isopropyl, halo, cyano,
--(CH.sub.2).sub.pC(.dbd.O)OH, --(CH.sub.2).sub.pC(.dbd.O)O-alkyl,
--(CH.sub.2).sub.pC(.dbd.O)NH.sub.2; n and p are integers and
preferably n is independently the integer 0, 1, 2, 3, 4, or 5 and p
is independently the integer 0, 1, 2, or 3; preferably at least one
R.sub.3, R'.sub.3, R.sub.4, and R'.sub.5, R.sub.5 or at least two
of R.sub.6, R.sub.7, R.sub.8 and R.sub.9 are each independently H,
methyl, ethyl, n-propyl, isopropyl, halo, or cyano; provided that
when one or more of R.sub.3, R'.sub.3, R'.sub.5, and R.sub.5 is
isopropyl, R.sub.4 is other than isopropyl; provided that when
R.sub.4 is isopropyl, R.sub.3, R'.sub.3, R'.sub.5, and R.sub.5 are
each independently other than isopropyl; provided that when R.sub.8
is isopropyl, R.sub.9 is other than isopropyl; and provided that in
a therapeutic composition, (2) is not the structure where R.sub.2
is
##STR00014##
and where A.sub.1 is H, A.sub.2 is methyl, R.sub.1a is H, R.sub.1b
is methyl, X.sub.1 is --NH--, J is --CH--, Y is t-butyl, Z is
(--OC.sub.6H.sub.5) and (3*) has an (S) configuration, (4*) has an
(S) configuration, (5*) has an (5) or (R) configuration, (6*) has
an (S) or (R) configuration, and (7*) has an (R) configuration.
Some embodiments of compounds of structure (2) have a K.sub.d as
determined by the methods described, for example, in Example 1 of
less than 100 micromolar, preferably less than 1 micromolar, and
even more preferably less than 0.1 micromolar.
[0019] Some embodiments of the IAP binding compounds or IAP binding
cargo molecules of structure (2), where A.sub.2 is H, X.sub.1 is
--NH--, J is --CH--, and n is 0 for R.sub.2, can be depicted by
structure (3):
##STR00015##
[0020] In some embodiments of compounds of structure (3), A.sub.1
can be H, lower alkyl, or optionally-substituted lower alkyl group;
R.sub.1a and R.sub.1b can separately be H, lower alkyl, optionally
substituted lower alkyl, lower alkylene, optionally substituted
lower alkylene group; or A.sub.1 together with either R.sub.1a or
R.sub.1b can form an optionally substituted heterocycloalkyl group
of 3 to 6 atoms;
[0021] Y can be H, an alkyl group, an alkyl group of 1 to 10 carbon
atoms, a branched alkyl group of 1 to 10 carbon atoms, an alkynyl
group, a cycloalkyl group of 3 to 7 carbon atoms, aryl,
heteroalkynyl, heteroaryl, or arylalkyl group;
optionally-substituted versions of the aforementioned groups;
hydroxy substituted versions of the aforementioned groups; or Y
together with Z, M, G, or R.sub.10 forms an optionally substituted
carbocyclic ring, or an optionally substituted heterocyclic ring
containing 1 to 5 heteroatoms, where Y is linked to Z, M, G, or
R.sub.10; preferably Y is linked to M, G, or R.sub.10 by any number
of atoms up to about 20 atoms.
[0022] Z can be H, alkyl, hydroxy, amino, alkylamino, dialkylamino,
alkoxy, cycloalkyl, cycloalkyloxy, aryl, heteroaryl, aryloxy, or
heteroaryloxy group; or Z together with Y, M, G, or R.sub.10 form
an optionally substituted carbocyclic ring, or an optionally
substituted heterocyclic ring containing 1 to 5 heteroatoms, where
Z is linked to Y, M, G, or R.sub.10; preferably Z is linked to Y,
M, G, or R.sub.10 by any number of atoms up to about 20 atoms.
[0023] M can be an optionally substituted alkyl, alkenyl, or
alkynyl group; an optionally substituted alkyl, alkenyl, or alkynyl
group of 1 to 5 carbon atoms; an optionally substituted alkylene,
an alkenylene, or alkynylene group; or an optionally substituted
alkylene, alkenylene, or alkynylene group of 1 to 5 carbon
atoms.
[0024] G can be absent (a bond), or a heteroatom including --O--;
--NH--; --(C.dbd.O)--; --S(O).sub.t-- where t is the integer 0, 1,
or 2; --NR.sub.18--; --NCOR.sub.18--; or --NS(O).sub.xR.sub.1s--
where x is the integer 0, 1, or 2, and R.sub.18 can be lower alkyl,
optionally-substituted lower alkyl, or cycloalkyl or R.sub.18 is
contained within an optionally substituted carbocyclic, or
optionally substituted heterocyclic ring containing 1 to 5
heteroatoms, where Rig is linked to Z, M, or R.sub.10, preferably
R.sub.18 is linked to Z, M, or R.sub.10, by any number of atoms up
to about 20 atoms.
[0025] R.sub.10 can be an aryl, a heteroaryl group, a fused aryl, a
fused heteroaryl group or optionally substituted versions of these
groups; or R.sub.10 can be any one of structures (4a), (4b), (4c),
or (4d):
##STR00016##
where X.sub.2 is a heteroatom in structures (4a) or (4b), or
X.sub.2 is a carbon-carbon bond as illustrated in structures (4c)
or (4d), and independently groups R.sub.11, R'.sub.11, R.sub.12,
any of R.sub.13-17, or any of R.sub.14-17 can be H, halogen, alkyl,
alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
aryloxy or heteroaryloxy; or independently R.sub.11, R'.sub.11,
R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can be H,
optionally-substituted alkyl, alkenyl, alkynyl, aryl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, aryloxy, or heteroaryloxy; or independently
R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17 can be acyl or acetyl groups, carboxylate, sulfonate,
sulfone, imine, or oxime groups; or groups R.sub.11, R'.sub.11,
R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can be
contained within an optionally substituted carbocyclic ring, or an
optionally substituted heterocyclic ring containing 1 to 5
heteroatoms, and can be linked to groups at position Y, Z, M, G,
R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any of
R.sub.14-17, preferably these groups are linked by any number of
atoms up to about 20 atoms. Some embodiments of compounds of
structure (3) have a K.sub.d as determined by the methods
described, for example, in Example 1 of less than 100 micromolar,
preferably less than 1 micromolar, and even more preferably less
than 0.1 micromolar.
[0026] Some embodiments include compounds of structure (5)
where:
##STR00017##
[0027] A.sub.1 can be H, or lower alkyl, or A.sub.1 and R.sub.1b
together form a ring of 3-5 atoms;
[0028] R.sub.1a can be H; R.sub.1b can be a lower alkyl group, or
together with A.sub.1 forms a ring of 3 to 5 atoms;
[0029] Y can be an alkyl group, an alkyl group of 1 to 10 carbon
atoms, a branched alkyl group of 1 to 10 carbon atoms, an alkynyl
group, heteroalkynyl, a cycloalkyl group of 3 to 7 carbon atoms,
optionally substituted versions of the aforementioned groups,
hydroxy substituted versions of the aforementioned groups, or Y
together with Z.sub.1a, Z.sub.1b, or R.sub.10 forms an optionally
substituted carbocyclic ring, or an optionally substituted
heterocyclic ring containing 1 to 5 heteroatoms, where Y can be
linked to Z.sub.1a, Z.sub.1b, or R.sub.10; preferably Y is linked
to Z.sub.1a, Z.sub.1b, or R.sub.10 by any number of atoms up to
about 20 atoms.
[0030] Z.sub.1a and Z.sub.1b can independently be an H, hydroxy,
amino, alkylamino, dialkylamino, alkoxy, aryloxy, or heteroaryloxy
group; or Z.sub.1a, Z.sub.1b, together with Y or R.sub.10 form a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Z.sub.1a or Z.sub.1b, is linked to Y or
R.sub.10; preferably Z.sub.1a or Z.sub.1b, is linked to Y or
R.sub.10 by any number of atoms up to about 20 atoms.
[0031] M can be an optionally-substituted alkyl or an
optionally-substituted alkylene group of 1 to 5 carbon atoms.
[0032] G can be absent (a bond), or a heteroatom including --O--;
--NH--; --(C.dbd.O)--; --NR.sub.18--; --NCOR.sub.18--; or
--NS(O).sub.xR.sub.18-- where x=0, 1, or 2, and Rig can be lower
alkyl, optionally-substituted lower alkyl group.
[0033] R.sub.10 can be aryl, a heteroaryl group, or R.sub.10 can be
anyone of structures (4a), (4b), (4c), or (4d):
##STR00018##
where X.sub.2 can be a heteroatom in structures (4a) or 4(b) or
X.sub.2 is a carbon-carbon bond as illustrated in structures (4c)
or (4d), and independently groups R.sub.11, R'.sub.11, R.sub.12,
any of R.sub.13-17 or any of R.sub.14-17 can be H, halogen, alkyl,
alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
sulfonate, aryloxy or heteroaryloxy; or independently R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can
be H, optionally-substituted alkyl, alkenyl, alkynyl, aryl,
heteroaryl, hydroxyl, alkoxy, polyalkylether, amino, alkylamino,
dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy; or
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 can be acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can
be contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z.sub.1a, Z.sub.1b, M, G, R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17, preferably these groups are
linked by any number of atoms up to about 20 atoms. Some
embodiments of compounds of structure (5) have a K.sub.d as
determined by the methods described, for example, in Example 1 of
less than 100 micromolar, preferably less than 1 micromolar, and
even more preferably less than 0.1 micromolar.
[0034] Some embodiments include compounds of structure (5)
where:
##STR00019##
[0035] A.sub.1 can be H, methyl, ethyl, or A.sub.1 and R.sub.1b
together form a ring of 3-5 atoms.
[0036] R.sub.1a can be H; R.sub.1b can be a methyl or ethyl group,
or together with A.sub.1 forms a ring of 3 to 5 atoms.
[0037] Y can be an alkyl group, an alkyl group of 1 to 10 carbon
atoms, a branched alkyl group of 1 to 10 carbon atoms, an alkynyl
group, heteroalkynyl, a cycloalkyl group of 3 to 7 carbon atoms,
optionally substituted versions of the aforementioned groups;
hydroxy substituted versions of the aforementioned groups; or Y
together with Z.sub.1a, Z.sub.1b, or R.sub.10 forms a carbocyclic
ring, or a heterocyclic ring containing 1 to 5 heteroatoms, where Y
is linked to Z.sub.1a, Z.sub.1b, or R.sub.10; preferably Y is
linked to Z.sub.1a, Z.sub.1b, or R.sub.10 by any number of atoms up
to about 20 atoms.
[0038] Z.sub.1a and Z.sub.1b can independently be an H, hydroxy,
amino, alkylamino, diakylamino, alkoxy, aryloxy, or heteroaryloxy
group; or Z.sub.1a, Z.sub.1b, together with Y or R.sub.10 form a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Z.sub.1a or Z.sub.1b, is linked to Y or
R.sub.10; preferably Z.sub.1a or Z.sub.1b, is linked to Y or
R.sub.10 by any number of atoms up to about 20 atoms.
[0039] M can be an optionally-substituted alkyl or an
optionally-substituted alkylene group of 1 to 5 carbon atoms.
[0040] G can be absent (a bond), or a heteroatom including --O--;
--NH--; --(C.dbd.O)--; --NR.sub.18--; --NCOR.sub.18--; or
--NS(O).sub.xR.sub.18-- where x can be the integer 0, 1, or 2, and
Rig can be lower alkyl, optionally-substituted lower alkyl
group.
[0041] R.sub.10 can be a fused aryl, a fused heteroaryl group, or
preferably R.sub.10 is anyone of structures (4a), (4b), (4c), or
(4d):
##STR00020##
where X.sub.2 can be a heteroatom (4a) or (4b) or X.sub.2 can be a
carbon-carbon bond (4c) or (4d), and independently groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can
be H, halogen, alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl,
alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy; or
independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 can be H, optionally-substituted alkyl, alkenyl,
alkynyl, aryl, heteroaryl, hydroxyl, alkoxy, polyalkylether, amino,
alkylamino, dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy;
or independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17,
or any of R.sub.14-17 can be acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can
be contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z.sub.1a, Z.sub.1b, M, G, R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17, preferably these groups are
linked by any number of atoms up to about 20 atoms.
[0042] Some embodiments include compounds of structure (5)
where:
##STR00021##
where A.sub.1 can be H, or a methyl group; R.sub.1a is H; R.sub.1b
can be a methyl or ethyl group.
[0043] In structure (5) Y can be an alkyl group, an alkyl group of
1 to 10 carbon atoms, a branched alkyl group of 1 to 10 carbon
atoms, an alkynyl group, heteroalkynyl, a cycloalkyl group of 3 to
7 carbon atoms, optionally substituted versions of the
aforementioned groups, hydroxy substituted versions of the
aforementioned groups, or Y together with R.sub.10 forms a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Y is linked to R.sub.10; preferably Y is linked
to R.sub.10 by any number of atoms up to about 20 atoms.
[0044] Z.sub.1a and Z.sub.1b can independently be an H, hydroxy,
alkoxy, or aryloxy group.
[0045] M can be methylene, an optionally-substituted alkyl or an
optionally-substituted alkylene group of 1 to 5 carbon atoms.
[0046] G can be absent (a bond), or a heteroatom including --O--;
or --NH--,
[0047] R.sub.10 can be an aryl, a heteroaryl group, or in some
embodiments R.sub.10 can be a structure of formula (4a):
##STR00022##
where X.sub.2 is a heteroatom and independently groups R.sub.11,
R.sub.12, or any of R.sub.14-17 can be H, or optional substituents
including halogen, alkyl, aryl, alkenyl, alkynyl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, sulfonate, aryloxy or heteroaryloxy; or
independently R.sub.11, R.sub.12, or any of R.sub.14-17 can be H,
optionally-substituted alkyl, alkenyl, alkynyl, aryl, heteroaryl,
hydroxyl, alkoxy, polyalkylether, amino, alkylamino, dialkylamino,
alkyloxyalkyl, aryloxy, or heteroaryloxy; or independently
R.sub.11, R.sub.12, or any of R.sub.14-17 can be acyl or acetyl
groups, carboxylate, sulfonate, sulfone, imine, or oxime groups; or
groups R.sub.11, R.sub.12, or any of R.sub.14-17 can be contained
within a carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, and linked to groups at position Y, Z.sub.1a,
Z.sub.1b, M, G, R.sub.11, R.sub.12, or any of R.sub.14-17,
preferably these groups are linked by any number of atoms up to
about 20 atoms.
[0048] IAP binding compounds or IAP binding cargo molecules in
various embodiments of formula (2), (3), or (5) may be used in the
manufacture of a medicament for the therapeutic and/or prophylactic
treatment of a cancer or cellular proliferation condition
(including developmental disorders, cancer, autoimmune diseases, as
well as neuro-degenerative disorders). The IAP binding compounds or
IAP binding cargo molecules in various embodiments of formula (2),
(3), or (5) can be used in the preparation of a drug for treating
cancer or a cellular proliferation disorder condition in a ready to
use form. The drug can be administered to a patient for treating or
preventing cancer or a cellular proliferation disorder. In ready to
use form refers to the compounds being presentable for sale and may
include the compounds in a tablet, liquid, or other form for
administration, suitable packaging, instructions, and other
items.
[0049] One embodiment of the invention is a method of treating
cells or tissue that can include administering to cells having a
proliferation disorder, for example HeLa cells known to overexpress
IAP (other cells may include but are not limited to those with
developmental disorders, cancer, autoimmune diseases, as well as
neuro-degenerative disorders), an amount of the IAP binding
compounds or IAP binding cargo molecules in various embodiments of
formula (2), (3), or (5) that is effective to reduce or eliminate
the cellular proliferation disorder in the sample of cells or
tissue.
[0050] A further embodiment of the present invention is a method of
treating disorders associated with cell proliferation, including,
but not limited to proliferative disorders and diseases. Such
methods include administration of the compounds of the present
invention alone or in combination with other active agents,
including pharmaceuticals and chemotherapeutic agents. For example,
the dimmers of IAP binding compounds of the present invention may
be administered alone or in combination with chemotherapeutic
agents as is disclosed in commonly owned U.S. Provisional
Application No. 60/692,111, which is incorporated herein by
reference in its entirety.
[0051] The foregoing IAP binding compounds, as well as
pharmaceutically acceptable salts and solvates thereof, may be
formulated as pharmaceutical compositions or as diagnostic agents,
or both. These pharmaceutical compositions and diagnostic agents
may be used for treatment and detection of cell proliferative
disorders, as well as in screening assays for the discovery and
development of additional diagnostic and therapeutic agents for
modifying cell proliferation and detecting cell proliferative
disorders.
[0052] The present invention includes an assay for use in high
throughput screening or rational drug design of IAP binding
compounds that can, like the Smac tetrapeptide or its homologs in
other species, bind to a BIR domain of an IAP thereby modifying,
and preferably relieving IAP-mediated suppression of apoptosis. The
binding of test compounds can be used in the design of IAP binding
compounds and IAP binding cargo molecules for the identification,
prevention, and treatment of diseases related to cell
proliferation. The IAP binding cargo molecule or compounds in
embodiments of the present invention can bind to proteins such as
through the BIR domain of an IAP. In some embodiments, the IAP
binding molecule interacts with the BIR3 domain of the protein XIAP
or BIR2 domain of DIAP1. The IAP binding molecule can interact with
the protein through a specific binding groove of the BIR
domain.
[0053] The assay includes the steps of providing a labeled IAP
binding compound or an IAP binding-cargo molecule of structure (2),
(3), or (5), that binds to the appropriate BIR domain of the IAP,
wherein preferably at least one measurable feature of the labeled
IAP binding compound changes as a function of the labeled IAP
binding compound being bound to the IAP or free in solution. The
assay may further include contacting the BIR domain of an IAP with
the labeled IAP binding compound under conditions enabling binding
of the labeled IAP binding compound with the BIR domain, thereby
forming a labeled BIR-bound IAP binding compound complex having the
measurable feature. The labeled BIR-bound IAP binding compound
complex may be contacted with other peptides, IAP binding
compounds, or test compounds being developed, to measure the
binding of the peptides, IAP binding compounds, or test compound
for the BIR domain by measuring the displacement of the labeled IAP
binding compound from the labeled BIR-bound IAP binding compound
complex. Displacement of the labeled IAP binding compound from the
labeled BIR-bound IAP binding compound complex by the peptides, IAP
binding compounds, or test compound can be determined by measuring
the change in the measurable feature of the labeled IAP binding
compound, thereby determining if the test compound is capable of
binding to the BIR domain of the IAP and the strength of the
interaction.
[0054] The present invention relates to the treatment of cell
proliferation conditions and diseases and more specifically
conditions where the activity of IAP in cells, tissues or an
individual is abnormal. The invention features molecules that are
IAP binding compounds of structure (2), (3), or (5), that bind to
IAPs such as but not limited to XIAP, c-IAP1, c-IAP2, ML-IAP and
survivin in cells. The mimetic molecules optionally include an
integral or linked cargo portion that can include a therapeutic or
diagnostic functionality. The IAP binding compound molecules may be
administered to cells, a tissue, or a patient in need of treatment
or detection for a cell proliferation condition or disease. The
need for treatment can be identified by contacting cells or a
tissue, preferably from the patient, with an IAP binding molecule
having a detectable label or cargo that changes when the molecule
binds to an IAP in the tissue or cells. The binding of the IAP
binding compound molecule with the IAP in the cells can be used to
modify a cell proliferation condition or disease or it may be
combined with other therapeutic treatments such as radiation
therapy. The activity of IAP in the cells or the progress of a
course of treatment for a cell proliferation condition or disease
may be measured with an IAP binding cargo molecule having a
detectable label.
[0055] According to one aspect of the invention, a method of
selectively identifying neoplastic or cancer cells in a mixed
population of cells is provided. The method includes contacting the
mixed cell population with a cell permeable IAP-binding cargo
molecule of structure (2), (3), or (5), under conditions enabling
the IAP-binding cargo molecule to bind a protein like an IAP within
the neoplastic cells, thereby selectively identifying the
neoplastic cells by a detectable property of the IAP binding cargo
molecule, and in some embodiments a change in a detectable property
of the IAP binding cargo molecule upon complexation with IAP in the
neoplastic cells. The cells may be cultured cells or primary cells
from a patient (human or animal). Alternatively, the cells may be
present within the patient, and the contacting accomplished by
introducing the IAP-binding cargo molecule into the patient.
[0056] In an embodiment of the IAP-binding cargo molecule, the
cargo portion of the molecule comprises a dye label. In other
embodiments, the cargo portion of the molecule can be, but is not
limited to, an NMR-active nucleus or an MRI contrast agent. The
selective identification of tissues or cells having IAP is
performed through nuclear magnetic resonance or magnetic resonance
imaging. Alternatively, the labeled IAP-binding cargo molecule
comprises a radioisotope and the selective identification is
performed through positron emission tomography.
[0057] Another aspect of the invention features a method of
selectively damaging or inducing apoptosis in neoplastic cells by
killing some or all of the neoplastic cells in a mixed population
of cells. The method includes contacting a sample of the mixed cell
population with an IAP-binding cargo molecule of formula (2), or
(3), or (5). The IAP binding portion of the molecule or the cargo
portion of the molecule can include a moiety or substituent that is
directly or indirectly toxic to cells such as but not limited to a
radioisotope or a photosensitizing agent. The IAP binding portion
of the molecule binds to a protein like an IAP within the
neoplastic cells, where the toxic moiety of the IAP-binding cargo
molecule directly or indirectly exerts its toxic effect, thereby
damaging or killing at least a portion the neoplastic cells in a
mixed population of cells.
Another embodiment of the present invention is a composition that
includes cells and an IAP-binding cargo molecule. The IAP binding
cargo molecule binds to an IAP protein, such as XIAP, c-IAP1,
c-IAP2, ML-IAP, or survivin, preferably it binds to a BIR surface
groove of an IAP protein. In some embodiments the IAP binding
molecule binds to the BIR3 surface groove of an XIAP protein. The
IAP binding cargo molecule of structure (2), (3), or (5), can
permeate or be transfected into the cells and can, for example, be
used to displace one or more IAP proteins from caspases in the
cells or displace a protein like Smac sequestered by IAPs. The IAP
binding cargo molecule can have a detectable property which is
modified upon chemical, physical, or a combination of these
interactions, of the IAP binding molecule with the IAP protein in
the cells. This composition is useful as a control for monitoring
the presence of IAP in the cells undergoing treatment or for use as
a standard in the detection of abnormal IAP levels in a sample of
cells. The detectable property may be the emission of light by the
cargo portion of the molecule which changes when the IAP bonding
portion of the molecule binds to an IAP protein.
[0058] The IAP binding compounds or IAP binding cargo molecules of
structure (2), (3), or (5) in embodiments of the invention may be
characterized by having an IAP binding constant K.sub.d. In some
embodiments K.sub.d is less than about 10 .mu.M, in other
embodiments K.sub.d is less than about 1 .mu.M, and in still other
embodiments K.sub.d is less than about 0.1 .mu.M as determined by
the methods described in Example 1 or equivalents of these methods
known to those skilled in the art. Molecules of formula (2), (3),
or (5) having a K.sub.d of less than about 10 .mu.M can be used in
an in vitro binding assay with the BIR domain of an IAP and in some
embodiments the BIR3 domain of XIAP. The IAP binding cargo
molecule, and preferably the cargo portion of the molecule includes
but is not limited to a fluorogenic group, a radioisotope, or other
chromogenic group. In further embodiments the IAP binding cargo
molecule may include another peptide or peptidomimetic unit (e.g.,
dimer). The IAP binding cargo molecule may include an NMR-active
nucleus or an MRI contrast agent and the selective identification
of the cargo portion of the molecule performed through nuclear
magnetic resonance or magnetic resonance imaging. The one or more
cells in the composition may include but are not limited to cells
from a bodily fluid, tissue, tumor, fibroid, neoplastic cells, stem
cells, nervous system cells or any combination of these from an
animal, a mammal, or a human. The cells in the composition may be
taken from tissue suspected of exhibiting an abnormal level of IAP
based upon physical examination, motor skill tests, or detection by
palpation of a lump in a part of the body. The composition may
include one or more pharmaceutically acceptable excipients.
[0059] Another embodiment of the present invention is a method of
identifying IAP in cells that includes monitoring a mixture of one
or more IAP binding cargo molecules comprising structure (2), (3),
or (5), or dimers thereof, with one or more sample cells for the
presence of a detectable label from an IAP binding cargo molecule
or a change in a detectable property of one or more of the IAP
binding cargo molecules in the mixture. Preferably the detectable
property of the IAP binding cargo molecule changes upon formation
of a complex between the IAP binding cargo molecule and the BIR
domain of an IAP protein, the IAPs may include but are not limited
to XIAP, c-IAP1, c-IAP2, ML-IAP, or survivin in the sample cells.
In the sample, the IAP may be bound to a caspase, other proteins
like Smac, or combinations of these within the cell. Monitoring may
be performed on cells and an IAP binding cargo molecule in a fluid
sample, a flowing fluid, or fluids following purification. This
invention may be used to detect abnormal expression, over or under
expression, of IAP in cells and the indication of abnormal
expression used to begin a course of treatment of the cells.
Preferably the IAP binding cargo molecule is used to detect
overexpression of IAPs in cells. The method may further include the
act of comparing a change in a detectable property of one or more
IAP binding cargo molecules mixed with one or more control cells to
the detectable change in the property of the one or more IAP
binding cargo molecules mixed with one or more sample cells. The
comparison may be related to the amount or activity of IAP in the
sample cells. The method may include the act of combining one or
more IAP binding cargo molecules with one or more cells including
but not limited to sample cells, control cells, or various
combination of these cells. The monitoring may use the absorption
or emission of radiant energy by the mixture of IAP binding cargo
molecules and the cells, including but not limited to magnetic
resonance, fluorescence, chemiluminescence, magnetic resonance
imaging, and positron emission tomography. Preferably the change in
the detectable property of one or more of the IAP binding cargo
molecules in the mixture chemically, and or physically binding to
the IAP in the cells is a change in the intensity of fluorescent
emission of the IAP binding molecule. In some embodiments, a change
occurs in the fluorescent emission of one or more IAP binding cargo
molecules capable of displacing IAP from caspases or Smac from IAPs
in the sample cells.
[0060] A method of treating cells of the present invention includes
identifying the expression of IAP in cells and administering an
amount of a cell permeable IAP-binding cargo molecule or other
therapeutic to the cells to modify the activity of IAP in the
cells. The IAP-binding cargo molecule may be formulated with a
pharmaceutically acceptable excipient. For example, following
identification of abnormal levels of IAP in a sample of cells,
(optionally by comparison to a control sample of cells), purified
Smac, an IAP binding compound, or an IAP binding cargo molecule,
may be added to the cells to induce apoptosis. This invention can
be used to identify cells in need of treatment, treat the cells,
and monitor the progress of the treatment of the cells having the
abnormal IAP levels. The act of identifying cells having abnormal
IAP expression includes monitoring a mixture of one or more IAP
binding cargo molecules with one or more sample cells for a change
in a detectable property of one or more of the IAP binding cargo
molecules. The detectable property changes upon formation of a
complex between the IAP binding molecule and IAP in the sample
cells.
[0061] Another embodiment of the present invention is an article or
kit that includes packaging material containing a composition of
IAP binding compound or an IAP binding cargo molecule of formula
(2), (3), or (5) or a dimer thereof. The packaging material has a
label that indicates how the IAP binding cargo composition can be
used for administration, treatment, or detecting levels of IAP in a
sample of cells. The label may further indicate how the IAP binding
cargo molecule or another IAP binding cargo molecule included in a
pharmaceutical composition can be used to treat cells where an
abnormal level of IAP expression is determined.
[0062] An embodiment of the present invention is a method of
selectively identifying neoplastic cells in a mixed population of
cells. In the method a sample of the mixed cell population is
contacted with one or more IAP-binding cargo molecules of formula
(2), (3), or (5) or dimers thereof under conditions enabling the
IAP-binding cargo molecule to bind IAP within the neoplastic cells
and thereby selectively identifying the neoplastic cells. The cells
may include but are not limited to cultured cells, cells that are
removed from a subject by biopsy, or cells from a fluid. The
contacting may be performed by introducing the labeled IAP-binding
cargo molecule into a tissue sample or a tissue in a living subject
possessing or suspected of possessing the neoplastic cells. The
IAP-binding cargo molecule can have a dye label cargo portion and
preferably the dye is a fluorogenic dye. The labeled IAP-binding
cargo molecule may have an NMR-active nucleus or a contrast agent
and the selective identification performed through nuclear magnetic
resonance or magnetic resonance imaging. The labeled LAP-binding
cargo molecule may have a cargo portion of the molecule that is a
radioisotope and where the selective identification performed
through positron emission tomography. The IAP binding cargo
molecule may be formulated with pharmaceutically acceptable
excipients and optionally other therapeutic agents for modifying
apoptosis in the sample of cells.
[0063] Another embodiment of the present invention is a method of
selectively damaging or killing neoplastic cells in a mixed
population of normal and neoplastic cells. The method includes
contacting a sample of the mixed cell population with a cell
permeable IAP-binding cargo molecule of formula (2), (3), or (5) or
dimers thereof including an agent that is directly or indirectly
toxic to cells, preferably the cargo portion of the molecule is an
agent that is directly or indirectly toxic to cells. Under
conditions enabling the IAP-binding cargo molecule to bind IAP
within the neoplastic cells, the agent directly or indirectly
exerts its toxic effect, thereby damaging or killing at least a
portion the neoplastic cells. The method may use a toxic agent that
is a radioisotope. The method may use a photosensitizing toxic
agent and the selective damaging or killing is performed by
exposing the cell population to light.
DETAILED DESCRIPTION OF THE INVENTION
[0064] Before the present compositions and methods are described,
it is to be understood that this invention is not limited to the
particular molecules, compositions, methodologies or protocols
described, as these may vary. It is also to be understood that the
terminology used in the description is for the purpose of
describing the particular versions or embodiments only, and is not
intended to limit the scope of the present invention which will be
limited only by the appended claims.
[0065] It must also be noted that as used herein and in the
appended claims, the singular forms "a", "an", and "the" include
plural reference unless the context clearly dictates otherwise.
Thus, for example, reference to a "cell" is a reference to one or
more cells and equivalents thereof known to those skilled in the
art, and so forth. Unless defined otherwise, all technical and
scientific terms used herein have the same meanings as commonly
understood by one of ordinary skill in the art. Although any
methods and materials similar or equivalent to those described
herein can be used in the practice or testing of embodiments of the
present invention, the embodiment's methods, devices, and materials
are now described. All publications mentioned herein are
incorporated by reference. Nothing herein is to be construed as an
admission that the invention is not entitled to antedate such
disclosure by virtue of prior invention.
[0066] "Optional" or "optionally" means that the subsequently
described event or circumstance may or may not occur, and that the
description includes instances where the event occurs and instances
where it does not.
[0067] The IAP binding molecules of the present invention and
pharmaceutical compositions containing these compounds can bind to
IAP's (Inhibitor of Apoptosis Proteins) such as but not limited to
XIAP, c-IAP1, c-IAP2, survin, and LIVIN/ML-IAP. These compounds may
include diagnostic or therapeutic moieties or substituents as part
of the binding portion of the molecule or linked to the binding
portion of the molecule. The IAP binding cargo molecules may be
arbitrarily divided to include an IAP binding portion and a cargo
portion. The IAP binding portion of the molecule interacts with an
IAP protein, preferably the BIR domain of an IAP protein, and may
be a monomer or dimer. In some embodiments the IAP binding portion
of the molecule interacts with the BIR3 surface groove of XIAP. The
cargo portion of the molecule may be part of the backbone or IAP
binding portion of the molecule or the cargo portion may be
chemically bonded to the IAP binding portion of the molecule. The
cargo portion of the molecule may include but is not limited to
structures, moieties, and substituents for imaging, therapeutics,
probes, labels, or markers. The cargo portion and IAP binding
portion of the molecule may be connected by a chemical bond to the
IAP binding portion including but not limited to amide, ester, or
disulfide bonds, chelation, or by a linking group such as
diaminobutane or ethylene glycol and its oligomers where it is
desirable to separate the IAP binding portion of the molecule from
the cargo portion of the molecule. One or more atoms in any portion
of the IAP binding cargo molecule may be a radioisotope and used
for detection or treatment. In other embodiments, the cargo portion
may constitute a second monomer, thereby forming a dimer molecule,
via a linking group. The binding portion of the IAP binding
compound confers IAP target protein specificity to the molecule and
the cargo portion can provide a functional group to the molecule
for monitoring or evaluating the location of the molecule or
providing a therapeutic to that location within a cell sample or a
tissue in a mammal. The IAP binding compounds may be used to
displace sequestered proteins in cells, for example caspase-3, 7 or
9 or Smac interacting with an IAP, so that the released protein can
be used to promote apoptosis within the cell. Where the cargo
portion of the molecule is linked to the IAP binding portion, the
cargo portion may be bonded or chemically linked to any portion of
the IAP binding portion of the molecule so that it does not
adversely affect IAP binding, cell permeance or transfection into
cells. While chemical interaction between the IAP binding portion
and the cargo portion of the molecule may occur, the molecule is
made so that the molecule's cell permeance, its IAP binding
property, and function of the cargo portion are not adversely
affected by their combination. The suitability of any IAP binding
cargo molecule made by the method disclosed may be tested against
fluorescently labeled peptide [AbuRPF-K(5-Fam)-NH.sub.2] in cells
such but not limited to renal cell carcinoma, non-small cell lung
cancer, HeLa cells, or others known to overexpress IAP, or other
cells having a proliferation disorder. The IAP binding molecules of
the present invention are capable of permeating cells of interest,
binding to IAP in the cells, and optionally delivering the cargo to
the cells.
[0068] Embodiments of compounds of structure (2), (3), (5) include
2-substituted pyrrolidine-1-carbonyls, or 2,4-independently
substituted pyrrolidine-1-carbonyls that have a K.sub.d as
determined by methods described, for example, in Example 1 of less
than 100 micromolar, preferably less than 1 micromolar, and even
more preferably less than 0.1 micromolar.
[0069] The pharmaceutically active compounds of the invention are
sometimes referred to herein as drugs, to highlight their
therapeutic utility in promoting apoptosis by binding IAPs.
However, another embodiment of the invention utilizes the compounds
as diagnostic agents, for detection of IAP in vitro, in situ or in
vivo, or for IAP binding assays. In these embodiments, the
compounds of the invention are detectably labeled, for example,
with a fluorophore. Another embodiment of the invention utilizes
the compounds as targeting agents, i.e., by incorporating into
their structure tumor cell-killing or other anti-tumor or
therapeutic agents, such as radionuclides. Accordingly, drugs refer
to pharmaceutically/biologically active (i.e., IAP-binding)
compounds of the invention, for use as therapeutic, prophylactic,
or diagnostic agents.
[0070] The term heteroatom refers to nitrogen, oxygen, sulfur,
other atoms or groups where the nitrogen, sulfur and other atoms
may optionally be oxidized, and the nitrogen may optionally be
quaternized. Any heteroatom with unsatisfied valences is assumed to
have hydrogen atoms sufficient to satisfy the valences. In some
embodiments, for example where the heteroatom is nitrogen and
includes a hydrogen or other group to satisfy the valance of the
nitrogen atom, replacement of the nitrogen in a similar structure
by another heteroatom, for example by oxygen, will result in the
hydrogen or group previously bonded to the nitrogen to be absent.
The term heteroatom may include but is not limited to for example
--O--, --S--, --S(O)--, --S(O).sub.2--, --N--, --N(H)--, and
--N(C.sub.1-C.sub.6 alkyl).
[0071] The term alkyl refers to a saturated straight, branched, or
cyclic hydrocarbon having from about 1 to about 30 carbon atoms
(and all combinations and subcombinations of ranges and specific
numbers of carbon atoms therein). Lower alkyl group refers to a
saturated straight, branched, or cyclic hydrocarbon having group of
1 to 10 carbon atoms, more preferably 1 to 5 carbon atoms and all
combinations and subcombinations of ranges and specific numbers of
carbon atoms therein. Alkyl groups include, but are not limited to
methyl, ethyl, n-propyl, isopropyl, n-butyl, isobutyl, t-butyl,
n-pentyl, cyclopropyl, methylcyclopropyl, cyclopentyl, isopentyl,
neopentyl, n-hexyl, isohexyl, cyclohexyl, cyclooctyl, adamantyl,
3-methylpentyl, 2,2-dimethylbutyl, and 2,3-dimethylbutyl.
[0072] The term substituted alkyl refers to a saturated straight,
branched, or cyclic hydrocarbon having from about 1 to about 30
carbon atoms (and all combinations and subcombinations of ranges
and specific numbers of carbon atoms therein) having from 1 to 5
substituents. Substituted lower alkyl group refers to a saturated
straight, branched, or cyclic hydrocarbon of 1 to 10 carbon atoms,
more preferably 1 to 5 carbon atoms (and all combinations and
subcombinations of ranges and specific numbers of carbon atoms
therein) having from 1 to 5 substituents. Substituted alkyl
radicals and substituted lower alkyl groups can have from 1 to 5
substituents including but not limited to alkoxy, substituted
alkoxy, acylamino, thiocarbonylamino, acyloxy, amino, amidino,
alkylamidino, amidalkyl (such as --CH.sub.2C(.dbd.O)NH.sub.2 or
--CH.sub.2CH.sub.2C(.dbd.O)NH.sub.2), thioamidino, acylalkylamino,
cyano, halogen atoms (F, Cl, Br, I) to give halogenated or
partially halogenated alkyl groups, including but not limited to
--CF.sub.3, --CF.sub.2CF.sub.3, --CH.sub.2CF.sub.2Cl and the like,
hydroxy, nitro, carboxyl, carboxylalkyl, carboxylheterocyclic,
carboxyl-substituted heterocyclic, cycloalkyl, guanidino,
heteroaryl, aryl, heterocyclic, alkylamino, dialkylamino, or
optionally substituted versions of any of the aforementioned
groups.
[0073] The term alkylene radical as used herein includes reference
to a di-functional saturated branched or unbranched hydrocarbon
radical containing from 1 to 30 carbon atoms, and includes, for
example, methylene (--CH.sub.2--), ethylene (--CH.sub.2CH.sub.2--),
propylene (--CH.sub.2CH.sub.2CH.sub.2--), 2-methylpropylene
(--CH.sub.2CH(CH.sub.3)CH.sub.2--), hexylene
(--(CH.sub.2).sub.6--), and the like. Lower alkylene includes an
alkylene group of 1 to 10, more preferably 1 to 5, carbon
atoms.
[0074] Substituted alkylene radicals includes reference to a
di-functional saturated branched or unbranched alkylene radical or
group having 1-30 carbon atoms and having from 1 to 5 substituents.
Lower substituted alkylene radicals refer to a substituted alkylene
radical group, having 1-10 carbon atoms, preferably having 1-5
carbon atoms, and having from 1 to 5 substituents. Substituents can
include but are not limited to those for the alkyl groups.
[0075] The term alkenyl radical as used herein includes reference
to a branched, cyclic hydrocarbon, or unbranched hydrocarbon
radical of 2 to 30 carbon atoms containing at least one
carbon-carbon double bond, such as ethenyl, n-propenyl,
isopropenyl, n-butenyl, isobutenyl, t-butenyl, octenyl, decenyl,
tetradecenyl, hexadecenyl, eicosenyl, tetracosenyl and the like.
The term lower alkenyl includes an alkenyl group of 2 to 10 carbon
atoms, preferably 2 to 5 carbon atoms, containing at least one
carbon-carbon double bond. The one or more carbon-carbon double
bonds may independently have a cis or trans configuration.
Substituted alkenyl radical refers to an alkenyl radical or lower
alkenyl group having from 1 to 5 substituents that can include but
are not limited to those for the alkyl groups.
[0076] The term alkenylene radical includes reference to a
difunctional branched or unbranched hydrocarbon radical or group
containing from 2 to 30 carbon atoms and at least one carbon-carbon
double bond. "Lower alkenylene" includes an alkenylene group of 2
to 10, more preferably 2 to 5, carbon atoms, containing one
carbon-carbon double bond. Substituted alkenylene radical refers to
an alkenylene radical or lower alkenyl group having from 1 to 5
substituents that can include but are not limited to those for the
alkyl groups.
[0077] The term alkynyl radical or group refers to straight or
branched chain hydrocarbon radical having 2 to 12 carbon atoms and
at least one triple bond, some embodiments include alkynyl groups
of 2 to 6 carbon atoms that have one triple bond. A substituted
alkynyl will contain one, two, or three substituents as defined for
substituted alkyl groups. Alkynylene includes reference to a
difunctional branched or unbranched hydrocarbon chain containing
from 2 to 12 carbon atoms and at least one carbon-carbon triple
bond; some embodiments include an alkynylene groups of 2 to 6
carbon atoms with one triple bond. A substituted alkynylene will
contain one, two, or three substituents as defined for substituted
alkyl groups.
[0078] As used herein, "halo" or halogen refers to any halogen,
such as I, Br, Cl or F. As used herein, "cyano" refers to the
--C.ident.N group.
[0079] The term aryl radical or group refers to an optionally
substituted, mono or bicyclic aromatic ring radicals having from
about 5 to about 14 carbon atoms (and all combinations and
subcombinations of ranges and specific numbers of carbon atoms
therein), with from about 6 to about 10 carbons being preferred.
Non-limiting examples or aryl groups include, for example, phenyl
and naphthyl. A substituted aryl group will contain one or more
substituents as defined for substituted alkyl groups.
[0080] Aralkyl radical refers to alkyl radicals bearing an aryl
substituent and have from about 6 to about 20 carbon atoms (and all
combinations and subcombinations of ranges and specific numbers of
carbon atoms therein), with from about 6 to about 12 carbon atoms
being preferred. Aralkyl groups can be optionally substituted.
Non-limiting examples include, for example, benzyl, naphthylmethyl,
diphenylmethyl, triphenylmethyl, phenylethyl, and diphenylethyl. A
substituted arylalkyl group will contain one or more substituents
on the aryl or alkyl group as defined for substituted alkyl
groups.
[0081] Cycloalkylaryl radical or group refers to a cycloalkyl
radical fused to an aryl group, including all combinations of
independently substituted alkyl cycloalkylaryls, the cycloalkyl and
aryl group having two atoms in common. Examples of fused
cycloalkylaryl groups used in compounds of the present invention
may include 1-indanyl, 2-indanyl, 1-(1,2,3,4-tetrahydronaphthyl),
and the like. Tetrahydronaphthyl more specifically refers to those
univalent radicals or groups derived from fused polycyclic
hydrocarbons including all combinations of independently
substituted alkyl tetrahydronaphthyls. These radicals may have a
point of attachment at (C.sub.1) or equivalently (C.sub.4) in
structure (11), or position labeled (C.sub.2) and equivalently
(C.sub.3) in structure (11a). The chiral carbon atoms C.sub.1-4 in
tetrahydronaphthlene and its alkyl substituted derivatives may have
either an (R) or (S) configuration.
##STR00023##
[0082] Cycloalkyl radical or group more specifically includes
reference to a monovalent saturated carbocyclic alkyl radical
consisting of one or more rings in their structures and having from
about 3 to about 14 carbon atoms (and all combinations and
subcombinations of ranges and specific numbers of carbon atoms
therein), with from about 3 to about 7 carbon atoms being
preferred. Multi-ring structures may be bridged or fused ring
structures. The rings can optionally be substituted with one or
more of the substituents for the alkyl groups. Examples of
cycloalkyl groups include, but are not limited to, cyclopropyl,
cyclobutyl, cyclopentyl, cyclohexyl, cyclooctyl, and adamantyl. A
substituted cycloalkyl group will contain one or more substituents
as defined for substituted alkyl groups.
[0083] Cycloalkylalkyl radical more specifically refers to alkyl
radicals bearing an cycloalkyl substituent and having from about 4
to about 20 carbon atoms (and all combinations and subcombinations
of ranges and specific numbers of carbon atoms therein), with from
about 6 to about 12 carbon atoms being preferred and can include
but are not limited to methyl-cyclopropyl, methylcyclohexyl,
isopropylcyclohexyl, and butyl-cyclohexyl groups. Cycloalkylalkyl
radical or group can be optionally substituted with one or more
substituents for the alkyl groups including but not limited to
hydroxy, cyano, alkyl, alkoxy, thioalkyl, halo, haloalkyl,
hydroxyalkyl, nitro, amino, alkylamino and dialkylamino.
[0084] The term acyl refers to an alkyl, substituted alkyl,
alkenyl, alkynyl, cycloalkyl, cycloalkenyl, aryl, heteroaryl, or
heterocyclyl group as defined above bonded through one or more
carbonyl --C(.dbd.O)-- groups to give a group of formula
--C(.dbd.O)R where R is the substituted alkyl, alkenyl, alkynyl,
cycloalkyl, cycloalkenyl, aryl, heteroaryl, or heterocyclyl group.
When the term acyl is used in conjunction with another group, as in
acylamino, this refers to the carbonyl group {--C(.dbd.O)} linked
to the second named group. Thus, acylamino or carbamoyl refers to
--C(.dbd.O)NH.sub.2, acylalkylamino can refer to groups such as
--C(.dbd.O)NR'R'' where R' and R'' can be H or alkyl. Amidalkyl
refers to groups such as --CH.sub.2C(.dbd.O)NH.sub.2,
--CH.sub.2CH.sub.2C(.dbd.O)NH.sub.2) and more generally
--(CH.sub.2).sub.pC(.dbd.O)NH.sub.2. Carboxy refers to the radical
or group --C(.dbd.OH), carboxyalkyl refers to the groups such as
--(CH.sub.2).sub.pC(.dbd.O)OH, alkyl carboxyalkyl refers to groups
such as (--C(.dbd.O)O-(alkyl)), and alkoxycarbonyl or acylalkoxy
refers to a (--C(.dbd.O)O-(alkyl)) group, where alkyl is previously
defined. As used herein aryoyl or acylaryl refers to a
(--C(.dbd.O)(aryl)) group, wherein aryl is as previously defined.
Exemplary aroyl groups include benzoyl and naphthoyl. Acetyl refers
to the group CH.sub.3C(.dbd.O)-- and may be abbreviated by the term
"Ac" as is Table 5. Formyl refers to the radical or group
HC(.dbd.O)--. In the aforementioned group p can be independently
the integer 0, 1, 2, or 3.
[0085] Aryloxy radical refers to optionally substituted mono or
bicyclic aromatic radical having from about 5 to about 14 carbon
atoms and an (aryl-O--) radical group wherein aryl is as previously
defined. Such aryloxy radicals include but are not limited to that
illustrated by the radical of formula (12). Optional substituents
on the aryl ring in the aryloxy radical may include but are not
limited to hydrogen, alkyl, halogen, hydroxy, alkoxy,
alkoxycarbonyl or other substituents. Embodiments of IAP binding
compounds of the present invention can include an optionally
aryloxy group like the phenoxy radical linked to the pyrrolidine
ring as illustrated but not limited to compounds in Table 5. Some
embodiment of IAP binding compounds include include a phenoxy
radical where the K.sub.d as determined by methods described, for
example, in Example 1 is less than about 0.1 micromolar.
[0086] The terms "alkoxy" and "alkoxyl" refer to an optionally
substituted (alkyl-O--) radical or group wherein alkyl is as
previously defined. Exemplary alkoxy radicals or groups include
methoxy, ethoxy, n-propoxy, i-propoxy, n-butoxy,
cyclopropyl-methoxy, and heptoxy. Alkoxy radicals can also include
optionally substituted alkyl in the alkylO-- group. Alkoxy can
include including optionally substituted aryl groups as previously
defined and illustrated by the non-limiting radical of formula
(13). A "lower alkoxy" group refers to an optionally substituted
alkoxy group containing from one to five carbon atoms. "Polyether"
refers to a compound or moiety possessing multiple ether linkages,
such as, but not limited to, polyethylene glycols or polypropylene
glycols. "Polyalkylethers" refers to alkyls interconnected by or
otherwise possessing multiple ether linkages as illustrated by the
non-limiting structure of formula (85) in Scheme VIII of Example
16. "Arylalkyloxy" means an arylalkyl-O-- group in which the
arylalkyl group is as previously described. Exemplary arylalkyloxy
groups include benzyloxy (C.sub.6H.sub.5CH.sub.2O--) radical
(BnO--), or 1- or 2-naphthalenemethoxy. Optional substituents on
the aryl ring in the benzyloxy radical may include but are not
limited to hydrogen, alkyl, halogen, hydroxy, alkoxy, and
alkoxycarbonyl or other substituents as defined for the alkyl
group.
##STR00024##
[0087] Arylamino radical refers to optionally substituted mono or
bicyclic aromatic radical having from about 5 to about 14 carbon
atoms and an (--NH(aryl)) radical group wherein aryl can be
optionally substituted as previously defined for alkyl. Optional
substituents on the aryl ring in the arylamino radical may include
but are not limited to hydrogen, alkyl, halogen, hydroxy, alkoxy,
and alkoxycarbonyl. A example of an arylamino group is the anilino
radical or group. Amino refers to an --NH.sub.2 group and
alkylamino refer to a radical (--NH R') group wherein R' is H,
alkyl, cycloalkyl, aryl, heteroaryl, aralkyl or optionally
substituted versions of these as previously defined. Exemplary
alkylamino radical groups include methylamino, ethylamino,
n-propylamino, i-propylamino, n-butylamino, and heptylamino. The
benzylamino radical refers to the arylamino group
C.sub.6H.sub.5CH.sub.2NH--, the aryl group may have optional
substituents including but are not limited to hydrogen, alkyl,
halogen, hydroxy, alkoxy, and alkoxycarbonyl or other
substituents.
[0088] Dialkylamino includes reference to a radical (--NR'R''),
wherein R' and R'' can be each independently be an H, alkyl,
cycloalkyl, aryl, heteroaryl, aralkyl or optionally substituted
versions of these as previously defined. Examples of dialkylamino
radicals include, but are not limited to, dimethylamino,
methylethylamino, diethylamino, di(1-methylethyl)amino, and the
like.
[0089] Heteroaryl includes reference to a monovalent aromatic
radical or group having one or more rings incorporating one, two or
three heteroatoms within the ring (chosen from nitrogen, oxygen, or
sulfur). These heteroaryls can optionally have hydrogen atoms
substituted with one or more other substituents. Examples of these
heteroaryl radicals include optionally substituted benzofurans,
benzo[b]thiophene 1-oxide, indoles, 2- or 3-thienyls or
thiophenyls, thiazoyls, pyrazines, pyridines, or the structures of
(4a) or (4b). For example, the structure of formula (E10) with
derivatives listed in Table 9, can include a fused ring R.sub.10
with a heteroatom X.sub.2 (N, O, or other) and substituents such as
R.sub.11 or R'.sub.11 including but not limited to hydrogen,
halogens, optionally substituted heteroaryls like pyridine,
benzofuran, indoles, thiazoyl, pyrazine, an alkoxyheteroaryl like
methoxy pyridine, or other groups.
[0090] The terms heteroalkyl, heteroalkylene, heteroalkenyl,
heteroalkenylene, heteroalkynyl, and heteroalkynlene include
reference to alkyl, alkylene, alkenyl, alkenylene, alkynyl, and
alkynlene radicals or groups, in which one or more of the carbon
atoms have been replaced or substituted with atoms such as but not
limited to single or multiply bonded nitrogen, sulfur, oxygen, or
these atoms having one or more hydrogens to satisfy the valiancy
requirements of the atom. Such substitutions can be used to form
molecules having functional groups including but not limited to
amines, ethers, and sulfides. A non-limiting example of a
heteroalkynyl group is illustrated by the group
--CH(Me)OCH.sub.2C.ident.H.
[0091] Heterocycloalkyl radical include reference to a monovalent
saturated carbocyclic radical or group consisting of one or more
rings, incorporating one, two or three heteroatoms (chosen from
nitrogen, oxygen or sulfur), which can optionally be substituted
with one or more substituents.
[0092] Heterocycloalkenyl includes reference to a monovalent
unsaturated carbocyclic radical consisting of one or more rings
containing one or more carbon-carbon double bonds where carbon
atoms are replaced or substituted for by one, two or three
heteroatoms within the one or more rings, the heteroatoms chosen
from nitrogen, oxygen, or sulfur, the heterocycloalkenyl can
optionally be substituted with one or more substituents.
[0093] Various groups used in the molecules of the present
invention can have one or more hydrogens atoms substituted for
chemical moieties or other substituents. Substituents may include
but are not limited to halo or halogen (e.g, F, Cl, Br, I),
haloalkyls such as --CF.sub.3, --CF.sub.2CF.sub.3,
--CH.sub.2CF.sub.3 and the like, thioalkyl, nitro, optionally
substituted alkyl, cycloalkyl, aralkyl, aryl, heteroaryls like
benzofurans, indoles, thienyls, thiophenyls, thiazoyls, pyrazines,
pyridines, alkoxy pyridine, hydroxy (--OH), alkoxy (--OR), aryloxy,
alkoxyheteroaryl, cyano (--CN), carbonyl --C(.dbd.O)--, carboxy
(--COOH) and carboxylate salts; --(CH.sub.2).sub.pC(.dbd.O)OH,
groups or radicals --(CH.sub.2).sub.pC(.dbd.O)O(alkyl), and
--(CH.sub.2).sub.pC(.dbd.O)NH.sub.2 where p is independently the
integer 0, 1, 2, or 3; sulfonates such as but not limited to tosyl,
brosyl, or mesyl; sulfone, imine, or oxime groups, groups like
--(C.dbd.O)Oalkyl, aminocarbonyl or carbamoyl --(C.dbd.O)NH.sub.2),
--N-substituted aminocarbonyl --(C.dbd.O)NHR'', amino, alkylamino
(--NHR') and dialkylamino (--NHR'R''). In relation to the
aforementioned amino and related groups, each moiety R' or R'' can
be, independently include of H, alkyl, cycloalkyl, aryl,
heteroaryl, aralkyl or optionally-substituted alkyl, cycloalkyl,
aryl, heteroaryl, araalkyl. Where one or more hydrogens atoms are
substituted for chemical moieties or other substituents, the
substituents can be chosen so that IAP binding compounds of formula
(2), (3), or (5) that contain them have a K.sub.d as measured by
methods described, for example, in Example 1 of less than about 100
micromolar, in some embodiments have a K.sub.d of less than 1
micromolar, and in other embodiments have a K.sub.d of less than
0.1 micromolar. In embodiments of where one or more hydrogens atoms
are substituted for chemical moieties or other substituents, the
substituents can be chosen so that IAP binding compounds of formula
(2), (3), or (5) that contain them have an EC.sub.50 as measured by
methods described, for example, in Example 2 of less than about 0.5
micromolar, in some embodiments have an EC.sub.50 of less than
about 0.06 micromolar. In embodiments of where one or more
hydrogens atoms are substituted for chemical moieties or other
substituents, the substituents can be chosen so that IAP binding
compounds of formula (2), (3), or (5) that contain them have a
binding constant K.sub.d of less than about 1 micromolar,
preferably less than 0.1 micromolar and an EC.sub.50 of less than
about 1 micromolar, preferably less than about 0.5 micromolar, and
in some embodiments an EC.sub.50 of less than about 0.06
micromolar.
[0094] Amino acids can be used in the IAP binding compound
compounds of this invention and may include the 20
naturally-occurring amino acids, known artificial amino acids such
as beta or gamma amino acids, and amino acids containing
non-natural side chains, and/or other similar monomers such as
hydroxyacids. Preferably the amino acids used in the IAP binding
compounds of the present invention are the 20 naturally-occurring
amino acids. The amino acids or artificial amino acids are chosen
with the effect that the corresponding IAP binding compound binds
IAPs, and preferably binds the BR domain of an IAP, and the
resulting IAP binding compound is permeable to the cell. A
non-limiting example of such an amino acid includes the use of Abu
(2-aminobutyric acid) as an amino acid in the IAP binding cargo
molecule. Where the molecule of structure (2), (3), or (5) includes
amino acids, it is preferred that the N-terminal amino acid is Ala
or Abu.
[0095] Where one or more chiral centers exist in an amino acid,
artificial amino acid, or atom of an IAP binding compound of
structure (2), (3), or (5), any of the enantiomers, D or L and more
generally R or S configuration, or diastereoisomers may optionally
be used in the IAP binding compound.
[0096] When any variable occurs more than one time in any
constituent or in any formula, its definition in each occurrence is
independent of its definition at every other occurrence.
Combinations of substituents and/or variables are permissible only
if such combinations result in stable compounds.
[0097] It is believed the chemical formulas and names used herein
correctly and accurately reflect the underlying chemical compounds.
However, the nature and value of the present invention does not
depend upon the theoretical correctness of these formulae, in whole
or in part. Thus it is understood that the formulas used herein, as
well as the chemical names attributed to the correspondingly
indicated compounds, are not intended to limit the invention in any
way, including restricting it to any specific tautomeric form or to
any specific optical; or geometric isomer, except where such
stereochemistry is clearly defined.
[0098] In embodiments of compounds of structure (2), (3), or (5)
substituents such as A.sub.1, A.sub.2, R.sub.1a, and R.sub.1b,
R.sub.2, X.sub.1, Y, Z, M, G, or R.sub.10, may be chosen
independently so that compounds of structure (2), (3), or (5) are
not a tripeptide or a tetrapeptide of amino acids, for example AVPI
or AVP.
[0099] Some embodiments of the compounds of structure (2), when
A.sub.2 is H, X.sub.1 is --NH--, J is --CH--, and n is 0 for
R.sub.2, can be depicted by structure (3):
##STR00025##
[0100] In some embodiments of compounds of structure (3), A.sub.1
is H, lower alkyl, or optionally-substituted lower alkyl group, an
N-acyl derivative like acylamino or acylalkylamino,
t-butoxycarbonyl, acetyl, formyl, carbamoyl, alkylene, or other;
R.sub.1a and R.sub.1b are separately H, lower alkyl,
optionally-substituted lower alkyl, lower alkylene, optionally
substituted lower alkylene group; or A.sub.1 together with either
R.sub.1a or R.sub.1b form an optionally substituted
heterocycloalkyl group of 3 to 6 atoms as illustrated by some of
the non-limiting embodiments of compounds in Table 5.
[0101] In IAP binding compounds of structure (3), Y can be H, an
alkyl group, an alkyl group of 1 to 10 carbon atoms, a branched
alkyl group of 1 to 10 carbon atoms, an alkynyl group,
heteroalkynyl, a cycloalkyl group of 3 to 7 carbon atoms, aryl,
heteroaryl, arylalkyl; optionally-substituted versions of the
aforementioned groups such as optionally substituted alkyl group,
optionally substituted alkyl group of 1 to 10 carbon atoms, an
optionally substituted branched alkyl group of 1 to 10 carbon
atoms, an optionally substituted alkenyl group, an optionally
substituted alkynyl group, an optionally substituted heteroalkynyl
group, an optionally substituted cycloalkyl group or 3 to 7 carbon
atoms, an optionally substituted aryl group, an optionally
substituted heteroaryl group, an optionally substituted arylalkyl
group; in some embodiments the substituent or moiety for the
aforementioned substituted group includes one or more hydroxy
groups; or Y together with Z, M, G, or R.sub.10 can for an
optionally substituted carbocyclic ring, or an optionally
substituted heterocyclic ring containing 1 to 5 heteroatoms, where
Y is linked to Z, M, G, or R.sub.10; preferably Y is linked to Y,
M, G, or R.sub.10 by any number of atoms up to about 20 atoms. A
non-limiting example of such a heterocyclic ring is illustrated by
the IAP binding molecule having the structure of formula (E12-2) in
Example 12.
[0102] In IAP binding compounds of structure (3), Z can be H,
alkyl, hydroxy, amino, alkylamino, diakylamino, alkoxy, cycloalkyl,
cycloalkyloxy, aryl, heteroaryl, aryloxy, heteroaryloxy; optionally
substituted versions of these groups; optionally substituted
versions of these groups including one or more hydroxyl groups; or
Z together with Y, M, G, or R.sub.10 can form an optionally
substituted carbocyclic ring, or an optionally substituted
heterocyclic ring containing 1 to 5 heteroatoms, where Z is linked
to Y, M, G, or R.sub.10; preferably Z is linked to Y, M, G, or
R.sub.10 by any number of atoms up to about 20 atoms. In some
embodiments, Z is an alkyl, hydroxy, amino, alkylamino,
dialkylamino, alkoxy, cycloalkyl, cycloalkyloxy, aryl, heteroaryl,
aryloxy, or heteroaryloxy group. The stereochemistry of the Z
substituent or group may be indicated using a bold wedged bond to
show a Z group coming out of the plane of the page or a dashed
wedged bond to show a Z group behind the plane of the page. In
embodiments of (3), the IAP binding molecule may have a structure
where the Z group is directed out of the plane of the page, the IAP
binding molecule may have a structure where the Z group is directed
behind the plane of the page, or the IAP binding molecule may
include a mixture where the Z group is a combination of these.
[0103] In IAP binding compounds of structure (3), M can be an
optionally-substituted alkyl, alkenyl, or alkynyl group; M can be
an optionally-substituted alkyl, alkenyl, or alkynyl group of 1 to
5 carbon atoms; M can be an optionally-substituted alkylene,
alkenylene, or alkynylene group; or an optionally-substituted
alkylene, alkenylene, or alkynylene group of 1 to 5 carbon atoms.
In some embodiments, for example but not limited to IAP binding
compounds of structure (E6) or (E14), M is a diradical alkylene
like the methylene group linked at one end of the methylene group
the 2 position of the pyrrolidine ring and at the other end of the
methylene group to an aryl group, a heteroaryl group, or an
optionally substituted heteroaryl group like a benzofuran or indole
group, or optionally substituted versions of groups of structure
(4a-d).
[0104] In IAP binding compounds of structure (3), G can be absent
(a bond) as in the non-limiting examples of compounds of structure
(E6) or (E14), or G can be a heteroatom including but not limited
to --O--; --NH--; --(C.dbd.O)--; --S(O).sub.t-- where t can be the
integer 0, 1, or 2; --NR.sub.18--; --NCOR.sub.18--; or
--NS(O).sub.xR.sub.18-- where x can be the integer 0, 1, or 2, and
R.sub.18 can be lower alkyl, optionally-substituted lower alkyl, or
cycloalkyl or R.sub.18 can be contained within an optionally
substituted carbocyclic, or optionally substituted heterocyclic
ring containing 1 to 5 heteroatoms, where R.sub.18 is linked to Z,
M, or R.sub.10, preferably R.sub.18 is linked to Z, M, or R.sub.10,
by any number of atoms up to about 20 atoms.
[0105] In IAP binding compounds of structure (3), R.sub.10 can be
an aryl, a heteroaryl group, a fused aryl, or a fused heteroaryl
group. In some embodiments, for example but not limited to
compounds in Table 5, R.sub.10 can be a substituted aryl, a
substituted heteroaryl group, a substituted fused aryl, or a
substituted fused heteroaryl group. In some embodiments R.sub.10
can be any one of structures (4a), (4b), (4c), or (4d):
##STR00026##
where X.sub.2 is a heteroatom in structures (4a) or (4b) or X.sub.2
is a carbon-carbon bond in structures (4c) or (4d), and
independently groups R.sub.11, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 can be H, halogen, alkyl,
alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, amino, alkylamino, dialkylamino, alkyloxyalkyl,
sulfonate, aryloxy, heteroaryloxy, other substituents or optionally
substituted versions of these groups. In embodiments where R.sub.11
or R'.sub.11 is a heteroaryl group, it can be a 2- or 3-thienyl
SC.sub.4H.sub.3-- (thiophenyl) group, pyridine, pyrazine or
optionally substituted versions of these. In some embodiments
R.sub.12 can be an aryl or a heteroaryl group, such as but not
limited to benzofuran, indole, benzo[b]thiophene-1-oxide or
benzo[b]thiophene-1,1-dioxide or optionally substituted versions of
these. Where X.sub.2 is either --O-- or --S(O).sub.k--, for the
integer k which can independently be 0, 1, or 2, R.sub.12 is
absent. Independently R.sub.1b, R'.sub.11, R.sub.12, any of
R.sub.13-17, or any of R.sub.14-17 can be H, optionally-substituted
alkyl, alkenyl, alkynyl, aryl, heteroaryl, hydroxyl, alkoxy,
polyalkylether, carboxyalkyl, alkyl carboxyalkyl, amino,
alkylamino, dialkylamino, alkyloxyalkyl, aryloxy, or heteroaryloxy.
Independently R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or
any of R.sub.14-17 can be acyl or acetyl groups, carboxylate,
sulfonate, sulfone, imine, or oxime groups; or groups R.sub.11,
R'.sub.11, R.sub.12, any of R.sub.13-17, or any of R.sub.14-17 can
be contained within a carbocyclic ring, or a heterocyclic ring
containing 1 to 5 heteroatoms, and linked to groups at position Y,
Z, M, G, R.sub.11, R'.sub.11, R.sub.12, any of R.sub.13-17, or any
of R.sub.14-17 preferably these groups are linked by any number of
atoms up to about 20 atoms. In some embodiments R.sub.10 can be
cycloalkyl, aryl, heterocycloalkyl, heterocycloalkenyl, heteroaryl,
or optionally substituted embodiments of these. In some embodiments
R.sub.10 can be the group:
##STR00027##
where R.sub.3, R'.sub.3, R.sub.4, R.sub.5, R'.sub.5, can each
independently be substituents like H, alkyl, cycloalkyl, alkylene,
aryl, heteroaryl, alkoxy optionally substituted alkyl, cycloalkyl,
alkylene, aryl, heteroaryl, halo, cyano,
--(CH.sub.2).sub.pC(.dbd.O)OH, --(CH.sub.2).sub.pC(.dbd.O)O-alkyl,
--(CH.sub.2).sub.pC(.dbd.O)NH.sub.2, p is independently the integer
0, 1, 2, or 3. For example, in the IAP binding compound of
structure (E4) where M is alkenylene, G is a heteroatom like --O--,
R.sub.10 can be an optionally substituted aryl group having
substituents for example but not limited to hydrogen, chloro,
bromo, alkyl, alkylene, alkoxy, or combinations of these.
[0106] Some embodiments of IAP binding compounds of formula (3)
include compounds of structure (5) where:
##STR00028##
A.sub.1 is H, or lower alkyl, or A.sub.1 and R.sub.1b together form
a ring of 3-5 atoms. In these embodiments, R.sub.1a is H and
R.sub.1b can be lower an alkyl group, or together with A.sub.1
forms a ring of 3 to 5 atoms.
[0107] In embodiments of IAP binding compounds of structure (5), Y
can be an alkyl group, an alkyl group of 1 to 10 carbon atoms, a
branched alkyl group of 1 to 10 carbon atoms, an alkynyl group,
heteroalkynyl, a cycloalkyl group of 3 to 7 carbon atoms,
optionally substituted versions of the aforementioned groups,
and/or hydroxy substituted versions of the aforementioned groups,
or Y together with Z.sub.1a, Z.sub.1b, or R.sub.10 forms a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Y is linked to Z.sub.1a, Z.sub.1b, or R.sub.10;
preferably Y is linked to Z.sub.1a, Z.sub.1b, or R.sub.10 by any
number of atoms up to about 20 atoms;
[0108] In embodiments of IAP binding compounds of structure (5),
Z.sub.1a and Z.sub.1b can independently be an H, hydroxy, amino,
alkylamino, diakylamino, alkoxy, aryloxy, or heteroaryloxy group;
or Z.sub.1a, or Z.sub.1b, together with Y or R.sub.10 form a
carbocyclic ring, or a heterocyclic ring containing 1 to 5
heteroatoms, where Z.sub.1a or Z.sub.1b, is linked to Y or
R.sub.10; preferably Z.sub.1a or Z.sub.1b, is linked to Y or
R.sub.10 by any number of atoms up to about 20 atoms;
[0109] In embodiments of IAP binding compounds of structure (5), M
can be an optionally-substituted alkyl or an optionally-substituted
alkylene group of 1 to 5 carbon atoms. In these structures, G can
be absent (a bond), or a heteroatom including --O--; --NH--;
--(C.dbd.O)--; --NR.sub.18--; --NCOR.sub.18--; or
--NS(O).sub.xR.sub.18-- where x=0, 1, or 2, and R.sub.18 is lower
alkyl, optionally-substituted lower alkyl group.
[0110] The IAP binding compounds or molecules of structure (2),
(3), or (5) can be prepared by various processes, which are
described by the non-limiting Schemes in the Examples and which
also form part of the subject matter of the present invention.
These IAP binding molecules may be prepared from molecules of
structure (6a) or (6b):
##STR00029##
where Y, M, Z, G, R.sub.2 and R.sub.10 are previously described and
where R' and R'' can be H, or a protecting group. The
stereochemistry of the Z or M substituent or group may be indicated
using a bold wedged bond to show either group coming out of the
plane of the page or a dashed wedged bond to show a Z or M group
behind the plane of the page. In embodiments of structure (6a) or
(6b), the IAP binding molecule may have a structure where the Z or
M group is directed out of the plane of the page, the IAP binding
molecule may have a structure where the Z or M group is directed
behind the plane of the page, or the IAP binding molecule may
include a mixture where the Z or M group includes a combination of
these. Structures of formula structure (6a) or (6b) may be prepared
from compounds such as but not limited to pyrrolidines like (1) in
Scheme I or (29) in Scheme IVa using the procedures or similar
processes described herein. The structures of formula structure
(6a) or (6b) may be further reacted to yield IAP binding molecules
of structure (2), (3), or (5) by treatment with an N-Boc-amino acid
or other suitable amine containing moiety that includes A.sub.1,
A.sub.2, R.sub.1a, or R.sub.1b or combinations of these as
described herein.
[0111] Certain acidic or basic compounds of the present invention
may exist as zwitterions. All forms of the compounds, including
free acid, free base and zwitterions, are contemplated to be within
the scope of the present invention. It is well known in the art
that compounds containing both amino and carboxyl groups often
exist in equilibrium with their zwitterionic forms. Thus, any of
the compounds described herein throughout that contain, for
example, both amino and carboxyl groups also include reference to
their corresponding zwitterions.
[0112] In any of the above teachings, an IAP binding cargo molecule
or other IAP binding compound of the invention may be either a
compound of one of the formulae herein described, or a
stereoisomer, prodrug, pharmaceutically acceptable salt, hydrate,
solvate, acid salt hydrate, or isomorphic crystalline form
thereof.
[0113] Pharmaceutically acceptable salt refers to those salts of
the IAP binding cargo molecules and IAP binding compounds of
structure (2), (3), or (5) or dimers thereof which retain the
biological effectiveness and properties of the free bases or free
acids, cell permeation and IAP binding, and which are not
biologically or otherwise undesirable. If the compound exists as a
free base, the desired salt may be prepared by methods known to
those of ordinary skill in the art, such as treatment of the
compound with an inorganic acids such as hydrochloric acid,
hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid and
the like; or with an organic acids such as acetic acid, propionic
acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid,
malonic acid, succinic acid, fumaric acid, tartaric acid, citric
acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic
acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid,
and the like. If the compound exists as a free acid, the desired
salt may also be prepared by methods known to those of ordinary
skill in the art, such as the treatment of the compound with an
inorganic base or an organic base. Salts derived from inorganic
bases include, but are not limited to, the sodium, potassium,
lithium, ammonium, calcium, magnesium, iron, zinc, copper,
manganese, aluminum salts and the like. Salts derived from organic
bases include, but are not limited to, salts of primary, secondary,
and tertiary amines, substituted amines including naturally
occurring substituted amines, cyclic amines and basic ion exchange
resins, such as isopropylamine, trimethylamine, diethylamine,
triethylamine, tripropylamine, ethanolamine,
2-dimethylaminoethanol, 2-diethylaminoethanol, trimethamine,
dicyclohexylamine, lysine, arginine, histidine, caffeine, procaine,
hydrabamine, choline, betaine, ethylenediamine, glucosamine,
methylglucamine, theobromine, purines, piperazine, piperidine,
N-ethylpiperidine, polyamine resins and the like.
[0114] The IAP binding cargo molecules or their pharmaceutically
acceptable salts may include pharmaceutically acceptable solvent
molecules within their crystal lattice. Where the solvent is water,
the compounds may form hydrates, in the case of other solvents and
in particular organic solvents such as but not limited to ethanol
the compounds may form solvates. The IAP binding cargo molecules or
IAP binding compounds of structure (2), (3), or (5) and its
homologs may be formulated, isolated, or purified as solvates.
[0115] The compounds employed in the methods of the present
invention may exist in prodrug form. Prodrug includes any
covalently bonded carriers which release the active parent drug,
for example, as according to formula (2) or other formulas or
compounds employed in the methods of the present invention in vivo
when such prodrug is administered to a mammalian subject. Since
prodrugs are known to enhance numerous desirable qualities of
pharmaceuticals (e.g. solubility, bioavailability, manufacturing,
etc.) the compounds employed in the present methods may, if
desired, be delivered in prodrug form. Thus, the present invention
contemplates methods of delivering prodrugs. Prodrugs of the
compounds employed in the present invention, for example formula
(2) may be prepared by modifying functional groups present in the
compound in such a way that the modifications are cleaved, either
in routine manipulation or in vivo, to the parent compound.
[0116] Accordingly, prodrugs include, for example, compounds
described herein in which a hydroxy, amino, or carboxy group is
bonded to any group that, when the prodrug is administered to a
mammalian subject, cleaves to form a free hydroxyl, free amino, or
carboxylic acid, respectively. Examples include, but are not
limited to, acetate, formate and benzoate derivatives of alcohol
and amine functional groups; and alkyl, carbocyclic, aryl, and
alkylaryl esters such as methyl, ethyl, n-propyl, iso-propyl,
butyl, isobutyl, sec-butyl, tert-butyl, cyclopropyl, phenyl,
benzyl, and phenethyl esters, and the like.
[0117] The compounds employed in the methods of the present
invention may be prepared in a number of ways well known to those
skilled in the art. The compounds can be synthesized, for example,
by the methods described in the specification and example, or
variations thereon as appreciated by the skilled artisan. All
processes disclosed in association with the present invention are
contemplated to be practiced on any scale, including microgram,
milligram, gram, multi-gram, kilogram, multi-kilogram or commercial
industrial scale.
[0118] IAP binding compounds of structure (2), (3), or (5) can be
mixed or combined with pharmaceutically acceptable excipients or
treated by lyophilization. These pharmaceutical compositions may be
administered topically, locally or systemically to a sample of
cells, a tissue, or patient. Topical or local administration can
allow for greater control of application of the pharmaceutical
composition. The IAP binding molecules or compounds including
structure (2), (3), or (5) singularly or in combination, can be
mixed with an appropriate pharmaceutical carrier prior to
administration. Examples of generally used pharmaceutical carriers
and additives that can be used to form pharmaceutical, diagnostic,
or therapeutic composition of the IAP binding molecules may include
but are not limited to conventional diluents, binders, lubricants,
coloring agents, disintegrating agents, buffer agents, isotonizing
agents, preservants, anesthetics and the like. Pharmaceutical
carriers that may be used include but are not limited to water,
saline, ethanol, dextran, sucrose, lactose, maltose, xylose,
trehalose, mannitol, xylitol, sorbitol, inositol, serum albumin,
gelatin, creatinine, polyethylene glycol, non-ionic surfactants
(e.g. polyoxyethylene sorbitan fatty acid esters, polyoxyethylene
hardened castor oil, sucrose fatty acid esters, polyoxyethylene
polyoxypropylene glycol) and similar compounds. Pharmaceutical
carriers and excipients as well as IAP binding molecules may also
be used in combination.
[0119] Stereoisomers are compounds having identical molecular
formulae and nature or sequence of bonding but differing in the
arrangement of their atoms in space and include optical and
geometrical isomers. Compounds of the present invention, or their
pharmaceutically acceptable salts, can have one or more asymmetric
carbon atoms or other asymmetric atoms in their structure, and may
therefore exist as single stereoisomers, enantiomers,
diastereoisomers, racemates, and mixtures of enantiomers or
diastereomers. These compounds may also include geometric isomers.
All such stereoisomers, racemates and mixtures thereof the IAP
binding compounds and IAP binding cargo molecules of the present
invention are intended to be within the scope of this invention
unless the specific stereochemistry or isomeric form is
specifically indicated. It is well known in the art how to prepare
and isolate such optically active forms. For example, mixtures of
stereoisomers may be separated by standard techniques including,
but not limited to, resolution of racemic forms, normal,
reverse-phase, and chiral chromatography, preferential salt
formation, recrystallization, and the like, or by chiral synthesis
either from chiral starting materials or by deliberate synthesis of
target chiral centers.
[0120] IAP binding molecules of structures (2), (3), or (5) that
contain chiral centers and the molecules can be in the form of a
single enantiomer or as a racemic mixture of enantiomers. In some
cases, i.e., with regard to the structure of certain specific IAP
binding molecules, chirality (i.e., relative stereochemistry) of
substituents or groups is indicated in the structure using a bold
wedged bond to indicate a substituent coming out of the plane of
the page and a dashed wedged bond to indicate a substituent behind
the plane of the page. In other cases the stereochemistry is not
indicated and such structures are intended to encompass both the
enantiomerically pure or purified forms of the compound shown as
well as a racemic mixture of enantiomers.
[0121] As will be readily understood, functional groups present may
contain protecting groups during the course of synthesis.
Protecting groups are chemical functional groups that can be
selectively appended to and removed from functionalities, such as
amine, hydroxyl groups or carboxyl groups. These groups are present
in a chemical compound to render such functionality inert to
chemical reaction conditions to which the compound is exposed. Any
of a variety of protecting groups may be employed with the present
invention. Protecting groups include the benzyloxycarbonyl group
and the tert-butyloxycarbonyl group. The term "protecting group" or
"blocking group" refers to any group which when bound to one or
more hydroxyl, amino, carboxyl or other groups of the compounds
(including intermediates thereof such as the aminolactams,
aminolactones, etc.) prevents reactions from occurring at these
groups and which protecting group can optionally be removed by
conventional chemical or enzymatic steps to reestablish the
hydroxyl, amino, carboxyl group for use in an IAP binding compound.
The particular removable blocking group employed is not critical
and preferred removable hydroxyl or amine blocking groups include
conventional substituents such as allyl, benzyl, acetyl,
chloroacetyl, thiobenzyl, benzylidine, phenacyl,
t-butyl-diphenylsilyl, t-butyl carbamate, benzyl carbamate and any
other group that can be introduced chemically onto a hydroxyl,
amine, or other functionality and later selectively removed either
by chemical or enzymatic methods in mild conditions compatible with
the nature of the product.
[0122] The cargo portion of the molecule may be part of the
backbone or IAP binding portion of the molecule or the cargo
portion may be chemically bonded or linked to the IAP binding
portion of the molecule. For example, the cargo portion may be
another unit of the formula (2), (3) or (5), linked by a linking
group to the first unit, thereby forming a dimer and may further
comprise an additional cargo portion. The cargo portion may also be
any of the substituents A.sub.1, A.sub.2, R.sub.1a, R.sub.1b, Y,
R.sub.2, or Z in molecules of formula (2), preferably the cargo
portion is linked to Y, R.sub.2, or Z in molecules of formula (2).
In molecules of formula (3), or (5), the cargo portion may be any
of the substituents A.sub.1, R.sub.1a, R.sub.1b, R.sub.10, Y, M, G,
or Z (includes Z.sub.1a and Z.sub.1b), preferably the cargo portion
includes a substituent linked at Y, Z (include Z.sub.1a and
Z.sub.1b), or R.sub.10. The cargo portion of the molecule may
include but is not limited to structures, moieties, and
substituents for imaging, therapeutics, detectable groups, probes,
labels, or markers. The cargo portion and IAP binding portion of
the molecule may be connected by a chemical bond to the IAP binding
portion including but not limited to amide, ester, or disulfide
bonds, chelation, or by a linking group such as diaminobutane or
ethylene glycol and its oligomers where it is desirable to separate
the IAP binding portion of the molecule from the cargo portion of
the molecule. One or more atoms in any portion of the IAP binding
cargo molecule may be a radioisotope and used for detection or
treatment.
[0123] The ability to quickly assay small molecules for their
effectiveness in disrupting protein-protein interactions can be
used in the development of viable drug candidates. One aspect of
the present invention comprises an assay that can be used to test
the binding affinity of a library of IAP binding compounds for
their ability to bind to the BIR domain of an inhibitor of
apoptosis protein (IAP), for example the BIR3 domain of mammalian
XIAP. The assay may be based on a detectable label, which can be a
fluorogenic dye molecule that is the cargo portion of an
IAP-binding cargo molecule. The detectable label may be any of the
substituents in the molecules of formula (2), (3), or (5). For
example, the detectable label may be linked to the substituent
R.sub.2, or linked to the substituents R.sub.2a-c supra in
molecules having the structure of formula (2)
##STR00030##
Similarly the detectable label may be linked to substituents like
Y, Z, M, G, R.sub.10, or other substituents in molecules having the
structure of formula (3), or (5) and pharmaceutically acceptable
salt thereof.
[0124] A detectable label included in a molecule of formula (2),
(3), or (5) can be a dye such as is a fluorogenic dye whose
emission is sensitive to the environment of the dye. However, the
detectable label portion of an IAP binding cargo molecule may also
be an NMR-active nucleus or a contrast agent and the selective
identification is performed through nuclear magnetic resonance or
magnetic resonance imaging. The detectable label in an IAP-binding
cargo molecule may also be a radioisotope and where the selective
identification is performed through positron emission tomography.
The cargo portion of the molecule may also be used to destroy cells
through a toxic effect of the cargo portion of the molecule.
[0125] Without wishing to be bound by theory, it is believed that
the molecule of structure (2), (3), or (5) packs into the BIR
domain of an IAP. Where the molecule of structure (2), (3), or (5)
has a fluorogenic dye as a cargo substituent, preferably the
packing of the molecule of structure (2), (3), or (5) into the
groove of the BIR of an IAP causes a large shift in emission
maximum and intensity of the dye when the environment of the IAP
binding cargo molecule changes from water to the hydrophobic pocket
or binding in or near the groove of the IAP. If a molecule (e.g.,
the native Smac protein or a test IAP binding compound) displaces
the IAP binding cargo molecule of formula (2), (3), or (5) with the
fluorogenic dye from the IAP, then emission will shift back to the
spectrum observed for the IAP binding cargo molecule with the
fluorogenic dye in water. Since the emission intensity is related
to the binding of a test peptide, or IAP binding compound with the
IAP, the intensity can be used to estimate the equilibrium
constant, K.sub.a, for displacement of the molecule of formula (2),
(3), or (5) by the IAP binding compound; K.sub.a refers to an
equilibrium constant for association that is inversely related to
the dissociation K.sub.d=1/K.sub.a. The larger the equilibrium
constant K.sub.a, the greater affinity the IAP binding compound has
for the BIR or BIR3. This allows the most promising inhibitors to
be quickly determined, and structural information about effective
inhibitors can be incorporated into the design of candidates for
the next round of testing. An IAP binding cargo molecule of formula
(2) having a detectable label may be complexed to an IAP and used
to screen other IAP binding compounds.
[0126] It will be understood by those of skill in the art that,
although the IAP binding cargo molecule of formula (2), (3), or (5)
described above is exemplified and preferred for practice of the
invention, various combinations of IAP binding compounds, BIR
binding domains of different IAP's, and detectable labels may be
used interchangeably to create variations of the assay described
above.
[0127] The IAP binding cargo molecule of structure (2), (3), or (5)
or dimers thereof may comprise any suitable therapeutic molecule or
detectable label, such as but not limited to a fluorophore,
radioisotope, or NMR active nucleus, such that binding of the IAP
binding cargo molecule to the BIR domain of an IAP, and preferably
the BIR3 groove of XIAP, is not detrimentally affected by the
presence of the detectable label or therapeutic in the IAP binding
cargo molecule. Preferably the molecule is cell permeable. A
non-limiting example of a detectable label which may be coupled to
the IAP binding compounds and IAP binding cargo molecules of
structure (2), (3), or (5) is the fluorogenic dye
6-Bromoacetyl-2-dimethylaminonaphthalene (badan) dye. Badan is a
fluorogenic dye whose sensitivity to environmental changes has
previously been made use of to probe protein binding
interactions.
[0128] The IAP binding cargo molecules of structure (2), (3), or
(5) can be used in an assay of test compounds that can bind to the
BIR domain of an IAP. These molecules may be used for example to
relieve suppression of apoptosis or to release sequestered proteins
like Smac from IAPs in cells. A high-throughput, cell-free assay,
for compounds of structure (2), (3), or (5) may also be prepared
using a fluorescently labeled peptide like
(AbuRPF-K(5-Fam)-NH.sub.2). A wide variety of IAP binding compounds
may be screened or assayed for their ability to bind to the BIR
domain of IAPs. IAP binding molecules with greater binding ability
than the naturally-occurring Smac, or IAP binding molecules that
can release sequestered Smac from IAP in cells can be identified by
such an assay. These compounds may be developed as therapeutic
agents, pharmaceutical compositions for the modification, and
preferably the promotion, of apoptosis in treatment of diseases or
pathological conditions in which cell proliferation plays a role.
These identified compounds may be used as prophylactics and can
also be modified to include detectable labels or toxic agents. The
assay may be further used in high throughput screening of large
panels of compounds generated by combinatorial chemistry or other
avenues of rational drug design. The fluorescence assay can be used
to test the binding of a library of IAP binding cargo molecules
modeled on the binding of Smac and its homologs, and preferably the
binding of Smac N-terminus, to the surface pocket of the BIR3
region of MAP. The results of such screening make it possible to
parse the contribution of each moiety in the structure of the IAP
binding cargo molecule to the total binding of the interaction. For
example, by comparing the binding, K.sub.d, of molecules (5-54) and
(5-55) in Table 5 for different sized alkyl groups for R.sub.1b,
the contribution of methylene group to the IAP binding K.sub.d, can
be used to make further modifications to the molecules.
[0129] The present invention features, IAP binding compounds and
methods of their use for binding to Inhibitor of Apoptosis Proteins
(IAPs), including but not limited to XIAP, c-IAP1, c-IAP2,
survivin, ML-IAP or combinations of these. One function of IAPs is
to suppress programmed cell death, whereas Smac, or IAP binding
compounds of structure (2), (3), or (5) can be used to relieve that
suppression. The mammalian IAP binding protein Smac is dependent
upon binding of its N-terminal four residues to a featured surface
groove in a portion of XIAP referred to as the BIR3 domain. This
binding prevents XIAP from exerting its apoptosis-suppressing
function with caspases in the cell. An IAP binding cargo molecule,
such as those of formula (2), (3), or (5), may be used to relieve
XIAP-mediated or other IAP-mediated suppression of apoptosis in
mammalian cells and can optionally provide a functional group
having a detectable property or a therapeutic function to the cell.
IAP binding cargo molecule, such as those of formula (2), (3), or
(5), may be used or to release sequestered proteins like Smac from
IAPs in cells.
[0130] One embodiment of the invention is a method of using
versions of IAP binding compounds of formula (2), (3), or (5) that
can include administering to abnormal cells or tissue, which may be
known to overexpress IAP as well as other cell lines related to
developmental disorders, cancer, autoimmune diseases, as well as
neuro-degenerative disorders such as but not limited to for example
SK-OV-3 cells, HeLa cells, or other cells, an amount of the IAP
binding compounds or IAP binding cargo molecules in various
embodiments of formula (2), (3), or (5) that is effective to
reduce, eliminate, or otherwise treat the sample of cells. An
amount of the IAP binding compounds or IAP binding cargo molecules
in various embodiments of formula (2), (3), or (5) can be
administered to normal cells or tissue as a control. The amount of
compound of formula (2), (3), or (5), combinations of these, or
combinations that include other therapeutic compounds that are
effective to reduce the proliferation condition can be determined
from changes in the optical density of treated and control cell or
tissue samples. The administered compound of structure (2), (3), or
(5), in some embodiments include those with an EC.sub.50 as
measured using the method described, for example, in Example 1 for
the IAP binding compounds of less than about 1 micromolar, in other
embodiments an EC.sub.50 of less than about 0.5 micromolar, and in
still other embodiments the EC.sub.50 for the administered IAP
binding compounds of structure (2), (3), or (5) can be less than
about 0.06 micromolar.
[0131] The term IAP binding compound refers to a molecule that
provides tertiary binding or activity with the BIR-containing
protein's functional domain (e.g., binding motif or active site) of
an IAP. These IAP binding compounds can be non-peptide agents such
as small molecule drugs of structure (2), (3), or (5) or that
include molecules of structure (2), (3), or (5). Knowing the
structural features and bonding of naturally-occurring IAP-binding
cargo molecules such as Smac and its homologs, it is advantageous
to make IAP binding compounds that have similar or improved binding
compared to the core IAP-binding N-terminal tetrapeptides of Smac
and its homologs. One added advantages of IAP binding cargo
molecules of structure (2), (3), or (5) in various embodiments of
the invention is that compounds of this size and structure can be
prepared by large scale syntheses, they can be chemically modified
to have improved solubility in aqueous solution, have improved cell
permeance, and provide ease of delivery to selected targets in
vivo.
[0132] IAP-binding cargo molecules of the invention can include
amino acids as well as molecules where the amino acids are modified
to produce IAP binding compounds by elimination, replacement or
modification, of one or more naturally occurring side chains of the
genetically encoded amino acids. Replacement can include exchange
of one or more of the L amino acids with D amino acids. Where the
naturally occurring side chains of the amino acids are replaced,
groups such as alkyl, lower alkyl, cyclic 4-, 5-, 6-, to 7-membered
alkyl, amide, lower alkyl amide, di(lower alkyl)amide, lower
alkoxy, hydroxy, carboxy and the lower ester derivatives thereof,
and with 4-, 5-, 6-, to 7-membered heterocyclics can be used. For
example, proline analogs can be made in which the ring size of the
proline residue is changed from 5 members to 4, 6, or 7 members or
substituents are added at various positions (2, 3, 4, or 5) on the
ring. For example in the structure of formula (2), the substituents
may be an ester group R.sub.2, or an aryloxy group Z. Cyclic groups
can be saturated or unsaturated, and if unsaturated, can be
aromatic or non-aromatic. Heterocyclic groups may be used in as a
side group in R.sub.2 in the molecules of formula (2), (3), or (5).
The heterocyclics can contain one or more nitrogen, oxygen, and/or
sulphur heteroatoms. Examples of such heterocyclic groups include
the furazanyl, furyl, imidazolidinyl, imidazolyl, imidazolinyl,
isothiazolyl, isoxazolyl, morpholinyl (e.g. morpholino), oxazolyl,
piperazinyl (e.g. 1-piperazinyl), piperidyl (e.g. 1-piperidyl,
piperidino), pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl,
pyrazolyl, pyridazinyl, pyridyl, pyrimidinyl, pyrrolidinyl (e.g.
1-pyrrolidinyl), pyrrolinyl, pyrrolyl, thiadiazolyl, thiazolyl,
thienyl, thiomorpholinyl (e.g. thiomorpholino), and triazolyl.
These heterocyclic groups can be substituted or unsubstituted.
Where a group is substituted, the substituent can be alkyl, alkoxy,
halogen, oxygen, or substituted or unsubstituted phenyl. The IAP
binding compounds may also have amino acid residues that have been
chemically modified by phosphorylation, sulfonation, biotinylation,
or the addition or removal of other moieties.
[0133] A variety of synthetic techniques known to those skilled in
the art are available for constructing IAP binding compounds with
the same or similar desired biological activity as the
corresponding native peptide but with more favorable activity than
the peptide with respect to solubility, stability, cell
permeability, immunogenicity, and/or susceptibility to hydrolysis
or proteolysis. These IAP binding cargo molecules are synthetic
compounds having a three-dimensional structure (i.e. a "peptide
motif") based upon the three-dimensional structure of a selected
Smac peptide or homolog. The peptide motif provides the IAP binding
compound with the desired biological activity, i.e., binding to
IAP, wherein the binding activity of the IAP binding compound is
not substantially reduced, and is often the same as or greater than
the activity of the native peptide on which the IAP binding
compound is modeled. IAP binding cargo molecules of the present
invention, can have additional beneficial characteristics that
enhance their therapeutic application, such as decrease cost for
synthesis, increased cell permeability, enhanced stability to
radiological elements, greater affinity and/or avidity for target
IAPs, and prolonged biological half-life.
[0134] In one class of IAP binding compounds, the backbone can
include various chemical bonds such as ester, thioester, thioamide,
retroamide, reduced carbonyl, dimethylene and ketomethylene bonds,
to modify IAP binding in the IAP binding cargo compounds.
[0135] Because caspases are cytosolic enzymes, diagnostic, imaging,
prophylactic, and therapeutic IAP binding cargo molecules that
chemically bind with the IAP proteins preferably cross cell
membranes. The cell membrane-permeant IAP binding cargo molecule
complexes of the present invention are preferably those that can
confer the desired intracellular translocation and IAP binding
properties to the IAP binding cargo molecules. Preferably, these
IAP binding cargo molecules are characterized by their ability to
confer transmembrane translocation and internalization of a complex
IAP binding cargo molecule of structure (2), (3), or (5) when
administered to the external surface of an intact cell, tissue or
organ. The ability of the IAP binding cargo molecules of the
present invention to permeate the cell and become localized within
cytoplasmic and/or nuclear compartments may be demonstrated by a
variety of detection methods such as, for example, fluorescence
microscopy, confocal microscopy, electron microscopy,
autoradiography, or immunohistochemistry.
[0136] Without wishing to be bound by theory, the IAP binding cargo
molecule of structure (2), (3), or (5) can bind to IAPs in the cell
and can but is not limited to competitively displacing IAPs bound
to a caspases in the cells or releasing Smac sequestered with IAPs
in the cells. The IAP binding cargo molecule chemically,
physically, or by a combination of these, binds to an IAP protein
and may displace it from a mature caspase or Smac protein in a
cell. The physical interaction between the IAP binding portion of
the IAP binding cargo molecule and an IAP protein can be used to
modify apoptosis in cells.
[0137] IAP binding molecules or cargo molecules of formula (2),
(3), or (5) can have an IAP binding portion which can, for example,
displace a molecule or polypeptide such as a mature caspase or
fluorescently labeled peptide (AbuRPF-K(5-Fam)-NH.sub.2) from the
BIR domain of an IAP. Where an increase in apoptosis in cells is
desirable, IAP binding molecules of formula (2), (3), or (5) having
a binding constant K.sub.d as measured by the methods described,
for example, in Example 1 for the displacement of
(AbuRPF-K(5-Fam)-NH.sub.2) from the BIR domain of an IAP can be
less than about 10 .mu.M, in some embodiments K.sub.d can be less
than about 1 .mu.M, and in still other embodiments K.sub.d can be
less than 0.1 micromolar under the assay conditions described in
the examples.
[0138] The labeled IAP-binding cargo molecule of structure (2),
(3), or (5) may include any suitable detectable label, including
fluorophores, chromophores, fluorescent nanoparticles, and other
dyes, isotopes, radioisotopes, metals, small molecules and the
like. Where the label is linked or bonded to the IAP binding
portion of the molecule, the label preferably does not interfere
substantially with the cell permeance or binding of the molecule to
IAP and permits its use in diagnostic or therapeutic applications.
In selecting a label, preferably a detectable property of the label
changes with the binding of the IAP binding cargo molecule to the
BIR domain of an IAP protein. The detectable property of the label
may change because the interaction of the label with the cellular
environment changes when the molecule binds to IAP thereby
enhancing or diminishing the property.
[0139] IAP-binding cargo molecules can also find utility as
therapeutic agents. In one instance the binding of the IAP binding
cargo molecule to IAP in cells can be used to modify apoptosis in
cells in need of treatment. In another instance, an IAP binding
cargo molecule where the cargo portion is radiolabeled may be used
for radiation therapy. Through the use of these cargo molecules,
radioactive atoms may be administered to a tumor, tissue, or other
population of cancer cells that overexpress IAP protein. The IAP in
the tumor becomes bonded to the IAP binding cargo molecule with the
radionuclei. Similarly, IAP-binding cargo molecules may be designed
to incorporate a dye that is active in photodynamic therapy. Other
such therapeutic utilities will be apparent to those skilled in the
art.
[0140] Cells being evaluated to detect abnormal levels of IAP in
the cells may be mixed and optionally incubated with an IAP binding
cargo molecule in a fluid sample in a vessel or wells, a flowing
fluid, or fluids following purification. These samples may be
monitored for changes in a detectable property of the IAP binding
cargo molecule. For example, flow cytometry is a method for
analyzing cells labeled with a fluorescent probe molecule on a flow
cytometer. In a flow cytometer the cells pass single-file through a
focused laser beam where they emit fluorescence from the probe
within the cell that can be detected by the photomultiplier tubes
of the cytometer. Cells with abnormal expression, high or low, of
IAP may be contacted and optionally incubated with IAP binding
cargo molecules of structure (2), (3), or (5) having a fluorescent
probe cargo portion. The binding of the IAP binding cargo molecules
to the LAP protein in the cells may be detected by the flow
cytometer. The intensity of the fluorescence emission can be
measured, digitized, and stored on a computer disk for analysis and
comparison to the fluorescent emission from control cells, samples
of cells being treated, or other cell samples whose IAP expression
is to be determined.
[0141] A method of screening for IAP proteins in cells with a
molecule that binds the BIR domain in an IAP protein is provided.
The method includes combining an IAP binding cargo molecule of
formula (2), (3), or (5) and the IAP proteins from cells, under
conditions wherein the IAP binding cargo molecule and IAP protein
can combine. It may include the step of incubating a sample of
cells with an IAP binding cargo molecule. IAP binding by the
molecule, an indication of the presence of IAP in the cells may be
determined by monitoring a detectable binding property of the IAP
binding cargo molecule. A change in the detectable property of the
IAP binding molecule may be used to determine the expression of IAP
in the cells. Where IAP protein is over expressed in cells, the IAP
binding cargo molecule can be used to bind the IAP and relieve
IAP-mediated inhibition of caspase activity in the cell.
Alternatively, where an IAP protein sequesters a protein like Smac
or other protein involved in apoptosis, the IAP binding cargo
molecule of structure (2), (3), or (5) can be used to release the
sequestered Smac or other protein from the IAP and modify apoptosis
within the cells. Where desirable or necessary in a course of
treatment, other IAP binding cargo molecules may be administered to
the cells. These additional IAP binding cargo molecules may have
different binding affinity for the IAP and may optionally include a
cargo portion that is a therapeutic agent such as a
radioisotope.
[0142] The IAP-binding cargo molecules, for example those of
formula (2), may be utilized in various assays to screen for and
identify compounds capable of acting as agonists or antagonists of
the IAP-caspase protein or IAP-Smac interactions within cells. For
example, IAP binding cargo molecules which can disrupt IAP-caspase
interaction, antagonists of this interaction, are expected to be
useful as pro-apoptotic drugs for treatment of cell proliferative
diseases such as cancer. Agonists of this interaction may be useful
as anti-apoptotic drugs for treatment of diseases where inhibition
of apoptosis is needed, e.g., degenerative diseases such as
Alzheimer's disease.
[0143] A living system may include plants, animals, single and
multicellular organisms, and insects. The term mammal includes
humans and all domestic and wild animals, including, without
limitation, cattle, horses, swine, sheep, goats, dogs, cats, and
the like.
[0144] An effective amount refers to that amount of a an IAP
binding cargo molecule of formula (2), (3), or (5) of the present
invention which, when administered to a sample of one or more cells
including a tissue, or a living system such as an animal,
preferably a mammal, in need thereof, is sufficient to effect
detection of IAP in tissue or cells, prophylaxis of tissue or
cells, or therapeutic treatment of IAP in the cells or tissue,
preferably those in a living system. For disease-states alleviated
by the inhibition of IAP activity, the amount of a compound of the
present invention which constitutes a therapeutically effective
amount that modifies or promotes apoptosis in one or more cells
including a tissue, or a subject will vary depending on the
compound, the disease-state and its severity, and the mammal to be
treated, but can be determined routinely by one of ordinary skill
in the art having regard to his own knowledge and to this
disclosure. A diagnostically effective amount is an amount of an
IAP binding cargo molecule sufficient to permit detection of IAP in
cells or tissue and may for example vary depending upon the
location of the cell or tissue and the stability of the IAP
binding-cargo molecule. A prophylactically effective amount is an
amount of an IAP binding cargo molecule that prevents the
occurrence of a disease state and may be determined for example by
prophylactic administration of IAP binding cargo molecules to
cells, tissue, or test animals with controls and then exposing
these to conditions known to induce abnormal cellular proliferation
and then determining the prophylactically effective amount of the
IAP binding cargo molecule.
[0145] Treating or treatment of a disease-state in a sample of
cells, a tissue, a mammal, and particularly in a human can include
detecting the presence of disease in the cells using compounds of
structure (2), (3), or (5) of the present invention and where a
disease is detected, optionally followed by administration of
compounds of the present invention to the one or more cells, to an
animal or tissue including human subjects, to modify and preferably
promote apoptosis. The disease-state in the case of over expression
of IAP proteins in cells may be alleviated by the inhibition of an
IAP-caspase interaction or an IAP-Smac interaction by administering
IAP binding cargo molecules of the present invention to the cells
thereby causing regression of the disease-state. The treatment can
also include: preventing the disease-state from occurring in a
mammal. For example, in a mammal that is predisposed to a
disease-state characterized by inhibition of apoptosis, but the
mammal has not yet been diagnosed as having the disease; an
effective amount of the IAP binding compounds of the present
invention may be administered to cells or the patient to inhibit
the disease-state or arrest its development.
[0146] In one embodiment, molecules of structure (2), (3), of (5)
can be administered as a composition to provide systemic
distribution of the IAP binding molecules such as by oral, buccal
or parenteral administration in the mammal or human. The
administration can be included in a method of treating mammals,
especially humans, suffering from a proliferation disorder or that
are at risk of a proliferation disorder. "At risk" refers to
mammals like persons whose genotype, family history, or other risk
factors indicates a greater than normal likelihood that the person
will suffer from a proliferation disorder if left untreated.
[0147] The expression of IAP in cells can be detected in patients
without the need for surgery. Accordingly, the present invention
encompasses compounds and methods for detecting intracellular
biochemical activities in living systems such as, whole animals,
tissues, or cells, by administering IAP binding cargo molecules of
this invention which translocate into cells, and which are
detectable in living cells at distances removed from the cells by
the presence of intervening tissue. The methods and compositions
can be used for identifying cells or tissue having abnormal
expression of IAP in a combination of one or more cells or tissues;
and administering an effective amount of an IAP-binding cargo
molecule to bind with the IAP in the sample cells and modify the
activity of the IAP in the cells or tissue. Examples of tissues to
which the methods and compositions of the present invention can be
applied include, for example, cancer cells, in particular, central
nervous system tumors, breast cancer, liver cancer, lung, head and
neck cancer, lymphomas, leukemias, multiple myeloma, bladder
cancer, ovarian cancer, prostate cancer, renal tumors, sarcomas,
colon and other gastrointestinal cancers, metastases, and
melanomas. Other examples of diseases, conditions or disorders
where modification of apoptosis or abnormal IAP activity are
involved and to which the methods and compositions of the present
invention can be applied include, but are not limited to infection,
inflammation, neurodegenerative diseases such as Alzheimer disease
and Parkinson's disease. A proliferation disorder may include a
disorder in which IAP activity inhibits apoptosis in cells
receiving an apoptotic stimulus.
[0148] Apoptosis may be promoted in a sample of cells by
administering to the cells an amount of an IAP-binding cargo
molecule effective to stimulate apoptosis in the cells. The cells
may be cultured cells, cells from within a tissue, and the tissue
preferably is located within a living organism, preferably an
animal, more preferably a mammal, and most preferably a human.
These latter embodiments are carried out by formulating the
IAP-binding cargo molecules of the invention in a therapeutically
effective amount as a pharmaceutical preparation for administration
to a mammalian subject. Such a pharmaceutical preparation
constitutes another aspect of the present invention.
[0149] The ability of a pharmaceutical agent to simulate or inhibit
apoptosis may be tested in a cell-free activity assay of downstream
targets of IAP. In the absence of an IAP-binding cargo molecule,
IAP itself can for example interact with Smac or inhibit the
activity of caspases, thereby arresting apoptosis. Such assays
include, but are not limited to, direct caspase-9 activity assays
and caspase activation assays (cleavage of procaspases). In these
assays, an IAP-binding cargo molecule of the invention, having a
pre-determined level of activity in such assays, is used as a
positive control and, optionally, a corresponding molecule known
not to be active in the assay is used as a negative control. Assays
can be conducted using these controls, and the cells undergoing the
treatment evaluated on relief of inhibition of Smac or caspase
activity by IAP in the presence of the IAP binding cargo molecule
of structure (2), (3), or (5). Cells that undergo apoptosis can be
differentiated from normal cells by distinct morphological changes
or by molecular markers, such as cleavage of chromosomes into
nucleosome ladders (detected by nuclear DNA staining).
[0150] Pharmaceutically active or biologically active IAP binding
cargo molecules of the invention are those that bind IAP (inhibitor
of apoptosis protein), specifically the BIR domain of IAP, more
specifically the BIR3 binding groove of XIAP. This biological
activity may be measured with respect to any IAP, including but not
limited to XIAP, c-IAP1, c-IAP2, survivin, ML-IAP, and DIAP.
[0151] Various aspects of the present invention will be illustrated
with reference to the following non-limiting examples.
Example 1
[0152] Binding constants (K.sub.d) were measured using fluorescence
polarization as described by Zaneta Nikolovska-Coleska, Renxiao
Wang, Xueliang Fang, Hongguang Pan, York Tomita, Peng Li, Peter P.
Roller, Krzysztof Krajewski, Naoyuki Saito, Jeanne Stuckey and
Shaomeng Wang, in "Development and Optimization of a Binding Assay
for the XIAP BIR3 Domain Using Fluorescence Polarization",
Analytical Biochemistry 2004, 332, 261-273). Briefly, test IAP
binding compounds at various concentrations for binding
measurements were mixed with 5 nM fluorescently labeled peptide
(AbuRPF-K(5-Fam)-NH.sub.2) and 40 nM of XIAP-BIR3 for 15 minutes at
room temperature in 100 .mu.L of 0.1M Potassium Phosphate buffer,
pH 7.5 containing 100 .mu.g/ml bovine .gamma.-globulin. Following
incubation, the polarization values (mP) were measured on a
Victor.sup.2V using a 485 nm excitation filter and a 520 nm
emission filter. IC.sub.50 values were determined from the plot
using nonlinear least-squares analysis using GraphPad Prism. The
K.sub.d values of competitive inhibitors were calculated using the
equation described by by Zaneta Nikolovska-Coleska et al. based
upon the measured IC.sub.50 values, the K.sub.d value of the probe
and XIAP BIR3 complex, and the concentrations of the protein and
probe in the competition assay. In various examples of IAP binding
or IAP binding cargo molecules ranges for K.sub.d values: Group A:
K.sub.d<0.1 .mu.M; Group B: K.sub.d=0.1-1 .mu.M; Group C:
K.sub.d=1-10 .mu.M; Group D: K.sub.d>10 .mu.M.
Example 2
[0153] This example illustrates use of compounds of embodiments of
the present invention that can be used in a method of treating
cells. The method using these IAP binding compounds can include
administering to abnormal cells, which may be known to overexpress
IAP as well as other cell lines related to developmental disorders,
cancer, autoimmune diseases, as well as neuro-degenerative
disorders such as but not limited to for example SK-OV-3 cells,
HeLa cells or other cells, an amount of the IAP binding compounds
or IAP binding cargo molecules in various embodiments of formula
(2), (3), or (5) that is effective to reduce, eliminate, or
otherwise treat the sample of cells.
[0154] The MTT assay is an example of an assay that has been used
for measuring cell growth as previously described (Hansen, M. B.,
Nielsen, S. E., and Berg, K. J. Immunol. Methods 1989, 119,
203-210) and incorporated herein by reference in its entirety.
Briefly, SK-OV-3 cells were seeded in 96-well plates in McCoy's
medium containing 10% fetal bovine serum albumin (20,000 per well)
and incubated overnight at 37.degree. C. Next day, test compounds
were added at various concentrations typically from about 10 to
about 0.0001 .mu.M and the plates were incubated at 37.degree. C.
for an additional 72 hrs. This incubation time was optimal for
measuring inhibitory effects of different analogs. 50 microliters
of 5 mg/mL MTT reagent to each well was added and the plates were
incubated at 37.degree. C. for 3 hours. At the end of incubation
period, 50 microliters of DMSO was added to each well to dissolve
cells and the optical density (OD) of the wells was measured with a
microplate reader (Victor.sup.21420, Wallac, Finland) at 535 nm.
Cell survival (CS) was calculated by the following equation:
CS=(OD treated well/mean OD control wells).times.100%
[0155] The EC.sub.50), defined as the drug concentration that
results in 50% CS, was derived by calculating the point where the
dose-response curve crosses the 50% CS point using GraphPad
Prism.
[0156] Representative results for IAP binding compounds are:
##STR00031##
TABLE-US-00001 TABLE 1 EC.sub.50, .mu.M Entry A.sub.1 R.sub.1b Y Z
R.sub.12 R.sub.14-17 R.sub.11 (.+-.sd) 1-1 Me Me tBu H
MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F H 0.092 .+-. 0.077
(R.sub.16) 1-2 Me Me cHex H
MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F H 0.060 .+-. 0.026
(R.sub.16) 1-3 Me Me cHex H H 6-F H 0.515 .+-. 0.093 (R.sub.16)
Example 3
[0157] This example illustrates the preparation of pyrrolidine
derivatives of Table 2. The examples include molecules of formula
(E3) that can include heteroalkynyl substituents.
##STR00032## ##STR00033##
[0158] The Preparation of
2S-Amino-N-[2-methyl-1S-(4S-phenoxy-2S-phenoxymethyl-pyrrolidine-1-carbon-
yl)-propyl]-propionamide hydrochloride (7):
[0159] A. (4S)-Phenoxy-(2S)-phenoxymethyl-pyrrolidine-1-carboxylic
acid tert-butyl ester (2): To a solution of alcohol 1 (0.53 g, 1.8
mmol) in anhydrous DCM (10 mL) was added phenol (0.21 g, 2.3 mmol),
Ph.sub.3P (0.52 g, 2.0 mmol), and 1,1'-(azodicarbonyl)-dipiperidine
(ADDP, 0.50 g, 1.9 mmol) in sequential order. After 2 hr at ambient
temperature, the heterogeneous reaction mixture was filtered. The
white solid was washed with DCM and the clarified filtrate was
washed with 2M NaOH, water, brine, dried with anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. The crude aryl ether
was purified by flash silica gel chromatography (3:1 hexane/EtOAc)
to afford 0.36 g (54%) of 2 as a colorless oil. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta. 7.29-7.24 (m, 4H), 6.94-6.82 (m, 6H),
4.91 (t, J=5.1 Hz, 1H), 4.37-4.28 (m, 2H), 4.12-4.05 (m, 1H),
3.79-3.64 (m, 2H), 2.48 (app d, J=13.8 Hz, 1H), 2.32-2.25 (m, 1H),
1.48 (s, 9H) ppm.
[0160] B. (4S)-Phenoxy-(2S)-phenoxymethyl-pyrrolidine (3):
Trifluoroacetic acid (2 mL) was added at ambient temperature to a
solution of 2 (0.36 g, 0.98 mmol) in DCM (10 mL). After 1.5 h, the
solution was concentrated to dryness and the crude product was
dissolved in EtOAc. The organic solution was washed with aqueous
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated. The crude pyrrolidine was purified by
flash silica gel chromatography (10% MeOH/DCM) to afford 0.23 g
(88%) of 3 as a brown-orange oil. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta. 7.32-7.26 (m, 4H), 6.98-6.87 (m, 6H), 4.90-4.87 (m, 1H),
4.07-4.01 (m, 2H), 3.63-3.57 (m, 1H), 3.35 (app d, J=12.3 Hz, 1H),
3.17 (app q, J=5.4 Hz, 1H), 2.77 (br s, 1H), 2.45-2.35 (m, 1H),
1.93-1.86 (m, 1H) ppm.
[0161] C.
[2-Methyl-1-(4S-phenoxy-2S-phenoxymethyl-pyrrolidine-1-carbonyl)-
-propyl]-carbamic acid tert-butyl ester (4):
O-(7-Azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium PF.sub.6
(HATU, 0.38 g, 1.0 mmol) was added to a solution of N-Boc-Val (0.28
g, 1.3 mmol) in anhydrous NMP (5 mL) at ambient temperature.
N-Methylmorpholine (0.1 mL) was added to reaction mixture. After 10
min, pyrrolidine 3 (0.23 g, 0.86 mmol) in NMP (5 mL) was added.
After 2 h, the reaction mixture was diluted with EtOAc and washed
with dilute aqueous NaHCO.sub.3, 1N HCl, water, and brine. The
organic phase was dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated. The crude amide was purified by flash silica gel
chromatography (3:1 hexane/EtOAc) to afford 0.36 g (90%) of 4 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.34-7.26
(m, 4H), 7.03-6.82 (m, 6H), 5.30 (d, J=9.3 Hz, 1H), 5.01-4.99 (m,
1H), 4.69-4.65 (m, 1H), 4.38-4.34 (m, 1H), 4.27-4.07 (m, 3H),
3.83-3.78 (m, 1H), 2.53-2.48 (m, 1H), 2.38-2.31 (m, 1H), 2.00-1.94
(m, 1H), 1.48 (s, 9H), 0.97 (d, J=7.2 Hz, 3H), 0.93 (d, J=7.2 Hz,
3H) ppm.
[0162] D.
2-Amino-3-methyl-1-(4S-phenoxy-2S-phenoxymethyl-pyrrolidin-1-yl)-
-butan-1-one (5): Trifluoroacetic acid (2 mL) was added at ambient
temperature to a solution of 4 (0.36 g, 0.79 mmol) in DCM (10 mL).
After 1.5 h, the solution was concentrated to dryness and the crude
product was dissolved in EtOAc. The organic solution was washed
with aqueous NaHCO.sub.3, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated. The crude amine was
purified by flash silica gel chromatography (5% MeOH/DCM) to afford
0.27 g (96%) of 5 as a light yellow oil. .sup.1H NMR (CDCl.sub.3,
300 MHz) .delta. 7.32-7.01 (m, 4H), 7.01-6.82 (m, 6H), 4.99 (m,
1H), 4.67-4.48 (m, 1H), 4.38-4.27 (m, 1H), 4.16-4.05 (m, 1H), 3.99
(app q, J=5.1 Hz, 1H), 3.78-3.72 (m, 1H), 2.50-2.28 (m, 2H), 1.86
(br s, 2H), 0.97 (d, J=7.2 Hz, 3H), 0.91 (d, J=7.2 Hz, 3H) ppm.
[0163] E.
{1S-[2-Methyl-1S-(4S-phenoxy-2S-phenoxymethyl-pyrrolidine-1-carb-
onyl)-propylcarbamoyl]-ethyl}-carbamic acid tert-butyl ester (6):
O-(7-Azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium PF.sub.6
(HATU, 0.23 g, 0.61 mmol) was added to a solution of N-Boc-Ala
(0.14 g, 0.74 mmol) in anhydrous NMP (3 mL) at ambient temperature.
N-Methylmorpholine (0.1 mL) was added to reaction mixture. After 10
min, pyrrolidine 5 (0.17 g, 0.48 mmol) in NMP (5 mL) was added.
After 16 h, the reaction mixture was diluted with EtOAc and washed
with dilute aqueous NaHCO.sub.3, 1N HCl, water, and brine. The
organic phase was dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated. The crude amide was purified by flash silica gel
chromatography (1:1 hexane/EtOAc) to afford 0.23 g (92%) of 6 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.33-7.23
(m, 4H), 7.02-6.87 (m, 6H), 5.02-4.99 (m, 2H), 4.68-4.48 (m, 2H),
4.33 (dd, J=3.9, 9.3 Hz, 1H), 4.23-4.09 (m, 4H), 3.83-3.78 (m, 1H),
2.52-2.47 (m, 1H), 2.38-2.28 (m, 1H), 2.08-1.99 (m, 1H), 1.80 (br
s, 1H), 1.45 (s, 9H), 1.36 (d, J=6.9 Hz, 3H), 0.95 (d, J=6.9 Hz,
3H), 0.90 (d, J=7.0 Hz, 3H) ppm.
[0164] F.
2S-Amino-N-[2-methyl-1S-(4S-phenoxy-2S-phenoxymethyl-pyrrolidine-
-1-carbonyl)-propyl]-propionamide hydrochloride (7):
Trifluoroacetic acid (2 mL) was added at ambient temperature to a
solution of 6 (0.23 g, 0.44 mmol) in DCM (10 mL). After 1.5 h, the
solution was concentrated to dryness and the crude product was
dissolved in EtOAc. The organic solution was washed with aqueous
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated. The crude amine was dissolved in
diethyl ether then treated with HCl(g). The crude salt was
triturated with diethyl ether and hexane to afford 0.13 g (65%) of
7 as a white solid. .sup.1H NMR, free base (CDCl.sub.3, 300 MHz)
.delta. 7.89-7.87 (m, 1H), 7.32-7.24 (m, 4H), 7.01-6.79 (m, 5H),
5.01-4.98 (m, 1H), 4.68-4.62 (m, 1H), 4.51-4.43 (m, 1H), 4.36-4.26
(m, 2H), 4.18-4.10 (m, 1H), 3.84-3.78 (m, 1H), 2.51-2.46 (m, 1H),
2.35-2.28 (m, 1H), 2.09-2.02 (m, 1H), 1.38-1.25 (m, 4H), 0.96-0.92
(m, 6H) ppm. Mass spectra, m/z=440 [(M+H).sup.+].
##STR00034##
TABLE-US-00002 TABLE 2 R.sub.3-5, R'.sub.3-5, MS K.sub.D Entry
A.sub.1 R.sub.1b Y Z R.sub.4 (M + H).sup.+ Range 2-1 H Me iPr
(S)--OPh H 440.3 B 2-2 Me Me iPr (S)--OPh H 454.3 B 2-3 H Me iPr H
H 348.3 B 2-4 H Me iPr H 2,3- 402.3 B (CH.sub.2).sub.4 2-5 Me Me
iPr H 2-Ph 438.3 B 2-6 H Me iPr H 2-Ph 424.2 B 2-7 H Me
--CH(Me)OCH.sub.2C.ident.CH (S)--OPh H 480.2 A
Example 4
[0165] This example illustrates the preparation of substituted
pyrrolidines of Table 3.
##STR00035## ##STR00036##
[0166] The Preparation of
trans-2S-Amino-N-(1S-{2S-[3-(2-ethyl-phenoxy)-propenyl]-4S-phenoxy-pyrrol-
idine-1-carbonyl}-2-methyl-propyl)-propionamide (14):
[0167] A.
trans-2S-[3-(2-Ethyl-phenoxy)-propenyl]-4S-phenoxy-pyrrolidine-1-
-carboxylic acid tert-butyl ester (9): To a solution of alcohol 8
(0.3 g, 0.94 mmol) in DCM (6 mL) was added 2-ethylphenol (0.14 g,
1.16 mmol) and Ph.sub.3P (0.27 g, 1.03 mmol). The solution was
cooled to 0.degree. C. and ADDP (0.28 g, 1.13 mmol) was added in
one portion. After 10 min, the reaction mixture was allowed to warm
to ambient temperature and stirring was continued for 16 h. The
white precipitate was removed by filtration and washed with DCM.
The clarified filtrate was washed successively with 1M NaOH, water,
and brine. The organic phase was dried with anhydrous
Na.sub.2SO.sub.4, filtered, and concentrated. The crude ether was
purified by flash silica gel chromatography (3:1 hexane/EtOAc) to
afford 0.18 g (45%) of 9 as a colorless oil. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta. 7.30-7.26 (m, 2H); 7.15 (m, 2H);
7.00-6.79 (m, 4H); 6.01-5.98 (m, 1H), 5.84 (m, 1H); 4.92 (br s,
1H); 4.53-4.43 (m, 3H); 3.76 (m, 2H); 2.65 (q, 2H); 2.39 (m, 1H);
2.16 (d, 1H); 1.46 (s, 9H), 1.21 (t, 3H) ppm.
[0168] B.
trans-2S-[3-(2-Ethyl-phenoxy)-propenyl]-4S-phenoxy-pyrrolidine
(10): Trifluoroacetic acid (2 mL) was added at ambient temperature
to a solution of 9 (0.18 g, 0.43 mmol) in DCM (10 mL). After 1 h,
the solution was concentrated to dryness and the crude product was
dissolved in EtOAc. The organic solution was washed with aqueous
NaHCO.sub.3, brine, dried over anhydrous MgSO.sub.4, filtered, and
concentrated. The crude amine (10) was used without further
purification (0.13 g obtained). .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta. 7.31-7.25 (m, 3H); 7.17-7.11 (m, 2H); 6.97-6.80 (m, 4H);
5.97-5.88 (m, 2H); 4.86 (m, 1H); 4.54-4.50 (m, 2H); 3.70 (q, 1H);
3.34 (d, 1H); 3.07 (d of d, 1H); 2.66 (q, 2H); 2.48-2.41 (m, 1H);
1.82-1.75 (m, 2H); 1.20 (t, 3H) ppm.
[0169] C.
trans-(1S-{2S-[3-(2-Ethyl-phenoxy)-propenyl]-4S-phenoxy-pyrrolid-
ine-1-carbonyl}-2-methyl-propyl)-carbamic acid tert-butyl ester
(11): O-7-Azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium
PF.sub.6 (HATU, 0.23 g, 0.62 mmol) was added to a solution of
N-Boc-Val (0.18 g, 0.82 mmol) in anhydrous NMP (3 mL) at ambient
temperature. N-Methylmorpholine (0.12 mL) was added to reaction
mixture. After 10 min, amine 10 (0.13 g, 0.41 mmol) in NMP (3 mL)
was added. After 16 h, the reaction mixture was diluted with EtOAc
and washed with dilute aqueous NaHCO.sub.3, 1N HCl, water, and
brine. The organic phase was dried over anhydrous Na.sub.2SO.sub.4,
filtered and concentrated. The crude amide was purified by flash
silica gel chromatography (3:2 hexane/EtOAc) to afford 0.20 g (92%,
2 steps) of 11 as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta. 7.32-7.24 (m, 2H); 7.15-7.06 (m, 2H); 6.99 (t, 1H);
6.89-6.77 (m, 4H); 5.96-5.91 (m, 2H); 5.23-5.20 (m, 1H); 5.01-4.86
(m, 2H); 4.53 (m, 2H); 4.21-4.09 (m, 2H); 4.09-3.97 (m, 1H); 2.68
(q, 2H); 2.36-2.32 (m, 1H); 2.18 (d, 1H); 1.97-1.91 (m, 1H); 1.44
(s, 9H); 1.29-1.18 (m, 6H); 0.99-0.81 (m, 6H) ppm.
[0170] D.
trans-2S-Amino-1-{2S-[3-(2-ethyl-phenoxy)-propenyl]-4S-phenoxy-p-
yrrolidin-1-yl}-3-methyl-butan-1-one (12): Trifluoroacetic acid (2
mL) was added at ambient temperature to a solution of 11 (0.20 g,
0.39 mmol) in DCM (10 mL). After 1 h, the solution was concentrated
to dryness and the crude product was dissolved in EtOAc. The
organic solution was washed with aqueous NaHCO.sub.3, brine, dried
over anhydrous MgSO.sub.4, filtered, and concentrated. The crude
amine (12) was used without further purification (0.14 g obtained).
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.28-7.26 (m, 2H); 7.15
(m, 2H); 6.99 (m, 1H); 6.89-6.76 (m, 4H); 6.10-5.86 (m, 2H);
5.01-4.95 (m, 2H); 4.56 (m, 3H); 3.92-3.79 (m, 1H); 3.31 (m, 1H);
2.66 (q, 2H); 2.32-2.16 (m, 1H); 1.68 (m, 4H); 1.28-1.19 (m, 3H);
0.97-0.81 (m, 6H) ppm.
[0171] E.
trans-[1S-(1S-{2S-[3-(2-Ethyl-phenoxy)-propenyl]-4S-phenoxy-pyrr-
olidine-1-carbonyl}-2-methyl-propylcarbamoyl)-ethyl]-carbamic acid
tert-butyl ester (13):
O-(7-Azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium PF.sub.6
(HATU, 0.19 g, 0.51 mmol) was added to a solution of N-Boc-Ala
(0.13 g, 0.67 mmol) in anhydrous NMP (3 mL) at ambient temperature.
N-Methylmorpholine (0.1 mL) was added to reaction mixture. After 10
min, amine 12 (0.14 g, 0.34 mmol) in NMP (3 mL) was added. After 72
h, the reaction mixture was diluted with EtOAc and washed with
dilute aqueous NaHCO.sub.3, 1N HCl, water, and brine. The organic
phase was dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated. The crude amide was purified by flash silica gel
chromatography (1:1 hexane/EtOAc) to afford 0.11 g (49%, 2 steps)
of 13 as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.
7.31-7.22 (m, 2H); 7.15-6.95 (m, 3H); 6.88-6.76 (m, 4H); 5.96-5.87
(m, 2H); 5.19 (br, 1H); 5.00 (m, 1H); 4.86 (t, 1H); 4.51-4.49 (m,
3H); 4.17-4.10 (m, 2H); 3.89-3.80 (m, 1H); 2.64 (q, 2H); 2.34-2.29
(m, 1H); 2.21-2.14 (m, 1H); 2.04-1.98 (m, 1H); 1.44 s, 9H);
1.35-1.23 (m, 4H); 1.17 (t, 3H); 0.97-0.87 (m, 6H) ppm.
[0172] F.
trans-2S-Amino-N-(1S-{2S-[3-(2-ethyl-phenoxy)-propenyl]-4S-pheno-
xy-pyrrolidine-1-carbonyl}-2-methyl-propyl)-propionamide (14):
Trifluoroacetic acid (2 mL) was added at ambient temperature to a
solution of 13 (0.11 g, 0.18 mmol) in DCM (10 mL). After 1 h, the
solution was concentrated to dryness and the crude product was
dissolved in EtOAc. The organic solution was washed with aqueous
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated to afford 0.068 g (76%) of 14 as a white
solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.86 (br, 1H);
7.31-7.22 (m, 2H); 7.15-7.05 (m, 2H); 6.98 (t, 1H); 6.88-6.76 (m,
4H); 5.97-5.86 (m, 2H); 5.00-4.98 (m, 1H); 4.88-4.83 (m, 1H);
4.57-4.51 (m, 2H); 4.44 (t, 1H); 4.21 (d of d, 1H); 3.89-3.82 (m,
1H); 2.64 (q, 2H); 2.33-2.29 (m, 1H); 2.17 (d, 1H); 2.04-2.00 (m,
1H); 1.36-1.25 (m, 6H); 1.17 (t, 3H); 0.99-0.88 (m, 6H) ppm.
##STR00037##
TABLE-US-00003 TABLE 3 R.sub.3-5, R'.sub.3-5, MS K.sub.D Entry
A.sub.1 R.sub.1b Y Z R.sub.4 (M + H).sup.+ Range 3-8 H Me iPr OPh H
466.2 B 3-9 H Me iPr OPh 2-Br 544.0 B 3-10 H Me iPr OPh 2,3-di-Cl
534.1 B 3-11 H Me iPr OPh 2,4-di-Cl 534.1 B 3-12 H Me iPr OPh 2-Et
494.4 B 3-13 Me Me iPr OPh 2,3-di-Cl 548.2 B 3-14 H Me iPr OPh 3-Br
544.1 B 3-15 H Me iPr OPh 2-iPrO 524.3 B 3-16 Boc Me iPr OPh
3,4-(CH.sub.2).sub.4 620.3 D 3-17 H Me iPr OPh 3,4-(CH.sub.2).sub.4
520.3 C 3-18 H Me iPr OPh 2-MeO 496.3 B 3-19 H H iPr OPh 2-MeO
482.3 D 3-20 H Me iPr OPh 2-Ph 542.3 B 3-21 H Me iPr OPh 2- 534.3 C
cyclopentyl 3-22 H Me iPr OPh 2,6-di-Me 494.3 A
Example 5
[0173] This example illustrates the preparation of pyrrolidine
derivatives of Table 4.
##STR00038## ##STR00039##
[0174] The Preparation of
2S-Amino-N-(1S-{2S-[3-(2-ethyl-phenoxy)-propyl]-4S-phenoxy-pyrrolidine-1--
carbonyl}-2-methyl-propyl)-propionamide (21):
[0175] A. 2S-(3-Hydroxy-propyl)-4S-phenoxy-pyrrolidine-1-carboxylic
acid tert-butyl ester (15): [Re: SRR-006-062] Palladium-on-carbon
(10%, 0.3 g) was added to a solution of alcohol 8 (3 g, 9.4 mmol)
in EtOAc (30 mL). The reaction mixture was placed on a Parr shaker
and pressurized to 45 PSI H.sub.2 (g). The heterogeneous mixture
was shaken for 24 h at ambient temperature. The catalyst was
removed via filtration through a 0.45 .mu.m PVDF filter disc
(Millipore Millex-HV.RTM.) and the clarified filtrate was
concentrated in vacuo to afford 2.9 g (97%) of 15 which was used
without further purification. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta. 7.29 (t, 2H); 6.96 (t, 1H); 6.85 (d, 2H); 4.88 (br s, 1H);
4.08-3.74 (m, 2H); 3.67-3.65 (m, 2H); 3.55 (d, 1H); 2.27-2.23 (m,
2H); 2.05-1.90 (m, 2H); 1.76-1.65 (m, 1H); 1.55 (q, 2H); 1.47 (s,
9H) ppm.
[0176] B.
2S-[3-(2-Ethyl-phenoxy)-propyl]-4S-phenoxy-pyrrolidine-1-carboxy-
lic acid tert-butyl ester (16): To a solution of alcohol 15 (0.61
g, 1.91 mmol) in DCM (10 mL) was added 2-ethylphenol (0.28 g, 2.33
mmol) and Ph.sub.3P (0.55 g, 2.09 mmol). The solution was cooled to
0.degree. C. and ADDP (0.58 g, 2.29 mmol) was added in one portion.
After 10 min, the reaction mixture was allowed to warm to ambient
temperature and stirring was continued for 16 h. The white
precipitate was removed by filtration and washed with DCM. The
clarified filtrate was washed successively with 1M NaOH, water, and
brine. The organic phase was dried with anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated. The crude ether was purified by flash
silica gel chromatography (3:1 hexane/EtOAc) to afford 0.46 g of 16
as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.28
(t, 2H); 7.13 (t, 2H); 6.96 (t, 1H); 6.89-6.84 (m, 3H); 6.78 (d,
1H); 4.91-4.87 (m, 1H); 3.96 (br, 4H); 3.56 (d, 1H); 2.63 (q, 2H);
2.28-2.26 (m, 1H); 2.11-2.06 (m, 2H); 1.86-1.77 (m, 3H); 1.46 (s,
9H); 1.17 (t, 3H) ppm.
[0177] C. 2S-[3-(2-Ethyl-phenoxy)-propyl]-4S-phenoxy-pyrrolidine
(17): Trifluoroacetic acid (2 mL) was added at ambient temperature
to a solution of 16 (0.46 g, 1.08 mmol) in DCM (10 mL). After 1 h,
the solution was concentrated to dryness and the crude product was
dissolved in EtOAc. The organic solution was washed with aqueous
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated to afford 0.30 g (85%) of 17 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.32-7.26
(m, 3H); 7.16-7.12 (m, 2H); 6.986.78 (m, 4H); 4.86 (s, 1H);
3.99-3.97 (m, 2H); 3.35 (d, 1H); 3.23 (m, 1H); 3.08 (m, 1H);
2.74-2.60 (m, 3H); 2.42 (m, 2H); 1.90-1.85 (m, 3H); 1.67-1.61 (m,
1H); 1.16 (t, 3H) ppm.
[0178] D.
(1S-{2S-[3-(2-Ethyl-phenoxy)-propyl]-4S-phenoxy-pyrrolidine-1-ca-
rbonyl}-2-methyl-propyl)-carbamic acid tert-butyl ester (18):
O-(7-Azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium PF.sub.6
(HATU, 0.39 g, 1.03 mmol) was added to a solution of N-Boc-Val
(0.30 g, 1.38 mmol) in anhydrous NMP (3 mL) at ambient temperature.
N-Methylmorpholine (0.2 mL) was added to reaction mixture. After 10
min, amine 17 (0.22 g, 0.67 mmol) in NMP (3 mL) was added. After 16
h, the reaction mixture was diluted with EtOAc and washed with
dilute aqueous NaHCO.sub.3, 1N HCl, water, and brine. The organic
phase was dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated. The crude amide was purified by flash silica gel
chromatography (3:1 hexane/EtOAc) to afford 0.30 g (83%) of 18 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.33-7.26
(m, 2H); 7.12 (t, 2H); 6.99 (t, 1H); 6.89-6.77 (m, 4H); 5.28-5.24
(m, 1H); 5.00-4.98 (m, 1H); 4.39-4.36 (m, 1H); 4.22-4.17 (m, 2H);
4.02-3.94 (m, 2H); 3.72 (d of d, 1H); 2.61 (q, 2H); 2.30-2.24 (m,
1H); 2.14-2.07 (, 1H); 1.98-1.89 (m, 1H); 1.82-1.74 (m, 4H); 1.44
(s, 9H); 1.18-1.13 (m, 3H); 0.99-0.93 (m, 6H) ppm.
[0179] E.
2S-Amino-1-{2S-[3-(2-ethyl-phenoxy)-propyl]-4S-phenoxy-pyrrolidi-
n-1-yl}-3-methyl-butan-1-one (19): Trifluoroacetic acid (2 mL) was
added at ambient temperature to a solution of 18 (0.30 g, 0.57
mmol) in DCM (10 mL). After 1 h, the solution was concentrated to
dryness and the crude product was dissolved in EtOAc. The organic
solution was washed with aqueous NaHCO.sub.3, brine, dried over
anhydrous Na.sub.2SO.sub.4, filtered, and concentrated to afford
0.23 g of 19 as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta. 7.33-7.28 (m, 2H); 7.17-7.12 (m, 2H); 6.99 (t, 1H);
6.89-6.83 (m, 3H); 6.78 (d, 1H); 4.98 (br, 2H); 4.39 (br, 1H),
4.07-3.92 (m, 4H); 3.75-3.67 (m, 1H); 2.61 (q, 2H); 2.31-2.24 (m,
2H); 2.13-2.08 (m, 2H); 1.94-1.75 (m, 6H); 1.16 (t, 3H); 1.01-0.85
(m, 6H) ppm.
[0180] F.
[1S-(1S-{2S-[3-(2-Ethyl-phenoxy)-propyl]-4S-phenoxy-pyrrolidine--
1-carbonyl}-2-methyl-propylcarbamoyl)-ethyl]-carbamic acid
tert-butyl ester (20):
O-(7-Azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium PF.sub.6
(HATU, 0.11 g, 0.27 mmol) was added to a solution of N-Boc-Ala
(0.07 g, 0.37 mmol) in anhydrous NMP (3 mL) at ambient temperature.
N-Methylmorpholine (0.05 mL) was added to reaction mixture. After
10 min, amine 19 (0.078 g, 0.18 mmol) in NMP (1 mL) was added.
After 16 h, the reaction mixture was diluted with EtOAc and washed
with dilute aqueous NaHCO.sub.3, 1N HCl, water, and brine. The
organic phase was dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated. The crude amide was purified by flash silica gel
chromatography (1:1 hexane/EtOAc) to afford 0.038 g of 20 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.33-7.26
(m, 2H); 7.12 (t, 2H); 6.99 (t, 1H); 6.88-6.76 (m, 4H); 5.08-5.00
(m, 1H); 4.98-4.96 (m, 1H); 4.52-4.47 (m, 1H); 4.374.34 (m, 1H);
4.21-4.16 (m, 2H); 3.98-3.92 (m, 2H); 3.75 (d, 1H); 2.61 (q, 2H);
2.32-2.22 (m, 1H); 2.14-1.99 (m, 4H); 1.86-1.77 (m, 3H); 1.44-1.41
(m, 8H); 1.36-1.13 (m, 4H); 1.16 (t, 3H); 0.96-0.88 (m, 6H)
ppm.
[0181] G.
2S-Amino-N-(1S-{2S-[3-(2-ethyl-phenoxy)-propyl]-4S-phenoxy-pyrro-
lidine-1-carbonyl}-2-methyl-propyl)-propionamide (21):
Trifluoroacetic acid (1 mL) was added at ambient temperature to a
solution of 20 (0.038 g, 0.06 mmol) in DCM (5 mL). After 1 h, the
solution was concentrated to dryness and the crude product was
dissolved in EtOAc. The organic solution was washed with aqueous
NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated. The crude amine was dissolved in
diethyl ether then treated with HCl(g). The crude salt was
triturated with diethyl ether and hexane to afford 0.022 g of 21 as
a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.87 (br,
1H); 7.33-7.25 (m, 2H); 7.12 (t, 2H); 6.96 (t, 1H), 6.89-6.77 (m,
4H); 4.98-4.96 (m, 1H); 4.45 (t, 1H); 4.37-4.25 (m, 2H); 4.00-3.94
(m, 2H); 3.77 (d, 1H); 2.61 (q, 2H); 2.32-2.21 (m, 1H); 2.14-2.04
(m, 3H); 1.61 (br, 2H); 1.35-1.25 (m, 4H); 1.16 (t, 3H); 0.97-0.89
(m, 6H) ppm.
##STR00040##
TABLE-US-00004 TABLE 4 R.sub.3-5, R'.sub.3-5, MS K.sub.D Entry
A.sub.1 R.sub.1b Y Z R.sub.4 (M + H).sup.+ Range 4-23 H Me iPr OPh
2-Br 524.3 B 4-24 H Me iPr OPh 2-Ph 543.7 B 4-25 H Me iPr OPh 2-Et
552.4 B 4-26 Me Me iPr OPh 2-Et 510.3 B 4-27 H H iPr OPh 2-Et 482.3
D 4-28 Me Me tBu OPh 2-Et 524.2 B 4-29 H Me iPr OPh 2-iPrO 526.3 B
4-30 H Me iPr OPh 2-iPr 510.3 B 4-31 H Me iPr OPh 2,6-di-Me 496.2 B
4-32 H Me iPr H 2-Ph 452.3 B 4-33 H H iPr H 2-Ph 438.3 D 4-34 H Me
iPr H 2-Et 404.3 C 4-35 H Me iPr H 2-iPrO 434.3 C 4-36 H (R)--Me
iPr H 2-Ph 452.3 D 4-37 H Me iPr H H 376.3 C 4-38 H Me iPr H
2,6-di-Me 404.3 D
Example 6
[0182] This example illustrated pyrrolidine derivatives of Table
5.
##STR00041## ##STR00042##
[0183] The Preparation of
2S-Amino-N-[1S-(2S-benzofuran-3-ylmethyl-pyrrolidine-1-carbonyl)-2-methyl-
-propyl]-propionamide (29):
[0184] A.
trans-2S-[3-(2-Iodo-phenoxy)-propenyl]-pyrrolidine-1-carboxylic
acid tert-butyl ester (23): To a solution of alcohol 22 (10.4 g,
0.04 mol) in DCM (300 mL) was added 2-iodophenol (12.1 g, 0.05 mol)
and Ph.sub.3P (14.4 g, 0.05 mol). At ambient temperature, ADDP
(13.8 g, 0.05 mol) was added in one portion. After 16 h, the white
precipitate was removed by filtration and washed with DCM. The
clarified filtrate was washed successively with 1M NaOH, water, and
brine. The organic phase was dried with anhydrous Na.sub.2SO.sub.4,
and then filtered through a short column of silica gel. The product
was eluted with DCM and then 1:1 hexane/EtOAc to afford 15.5 g
(79%) of 23 as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta. 7.76 (dd, J=7.6, 1.1 Hz, 1H), 7.27 (app t, J=7.6, 1.1 Hz,
1H), 6.78 (dd, J=7.6, 1.1 Hz, 1H), 6.70 (app t, J=7.6, 1.1 Hz, 1H),
5.74 (m, 2H), 4.58 (app d, J=4.7 Hz, 2H), 4.33 (m, 1H), 3.40 (m,
2H), 2.02-1.75 (m, 4H), 1.43 (s, 9H) ppm.
[0185] B. 2S-Benzofuran-3-ylmethyl-pyrrolidine-1-carboxylic acid
tert-butyl ester (24): To a solution of 23 (15.5 g, 36.1 mmol) in
anhydrous DMF (250 mL) was added n-Bu.sub.4NCl (10.0 g, 36.1 mmol),
K.sub.2CO.sub.3 (5.0 g, 36.1 mmol), NaHCO.sub.3 (2.45 g, 36.1
mmol), and Pd(OAc).sub.2 (0.16 g, 0.72 mmol). The orange-brown
reaction mixture was immersed in a pre-heated (100.degree. C.) oil
bath. After 2 h, the reaction mixture was cooled to ambient
temperature then diluted with diethyl ether and water. The layers
were separated and the aqueous phase was extracted twice with
diethyl ether. The combined organic extract was washed with water,
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered, and
concentrated. The crude benzofuran was purified by flash silica gel
chromatography (4:1 hexane/EtOAc) and then by normal-phase HPLC
(30% EtOAc/hexane) to afford 4.6 g (42%) of 24 as a colorless oil.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.62 (m, 1H), 7.46 (m,
1H), 7.26 (m, 3H), 4.13 (m, 1H), 3.40-3.21 (m, 2H), 3.15 (m, 1H),
2.68 (m, 1H), 1.80-1.61 (m, 4H), 1.51 (s, 9H) ppm.
[0186] C. 2S-Benzofuran-3-ylmethyl-pyrrolidine (25):
Trifluoroacetic acid (2 mL) was added at 0.degree. C. to a solution
of 24 (0.5 g, 1.65 mmol) in DCM (40 mL). After 2 h, an additional
portion of TFA (2 mL) was added. After 1 h, the reaction was
quenched by the careful addition of aqueous NaHCO.sub.3. The
reaction mixture was diluted with water and the crude product was
extracted with diethyl ether. The organic extract was washed with
aqueous NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered, and concentrated. The crude amine was purified by
reverse-phase HPLC (C18; 10-100% ACN/water, 0.1% TFA) which,
following neutralization, afforded 0.24 g (72%) of 25 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.53 (app
d, J=8.7 Hz, 2H), 7.43 (d, J=8.2 Hz, 1H), 7.27 (dd, J=7.0, 8.2 Hz,
1H), 7.21 (dd, J=7.0, 8.7 Hz, 1H), 6.96 (br s, 1H), 3.59 (m, 1H),
3.16-2.86 (m, 4H), 1.96-1.75 (m, 3H), 1.60 (m, 1H) ppm.
[0187] D.
[1S-(2S-Benzofuran-3-ylmethyl-pyrrolidine-1-carbonyl)-2-methyl-p-
ropyl]-carbamic acid tert-butyl ester (26): A solution of N-Boc
L-valine (121 mg, 0.56 mmol) in NMP (3 mL) was treated with HATU
(182 mg, 0.48 mmol) followed by N-methylmorpholine (0.1 mL, 0.9
mmol) at room temperature. After 10 min, amine 25 (80 mg, 0.4 mmol)
in NMP (5 mL) was added dropwise. After 16 h, the reaction was
diluted with EtOAc, washed with saturated NaHCO.sub.3, 1M HCl,
brine, dried over Na.sub.2SO.sub.4, filtered and concentrated. The
residual oil was purified by HPLC (20% EtOAc/hexane) to afford 111
mg (69%) of 26 as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta. 7.87 (d, J=6.9 Hz, 1H), 7.48-7.32 (m, 2H), 7.30-7.24
(m, 4H), 5.35 (d, J=9.3 Hz, 1H), 4.53-4.47 (m, 1H), 4.31 (dd,
J=6.6. 9.6 Hz, 1H), 3.72-3.56 (m, 2H), 3.31 (dd, J=3.0, 13.2 Hz,
1H), 2.49 (dd, J=10.5, 13.5 Hz, 1H), 2.05-1.74 (m, 6H), 1.44 (s,
9H), 1.03 (d, J=6.9 Hz, 3H), 097 (d, J=6.6 Hz, 3H) ppm.
[0188] E.
2S-Amino-1-(2S-benzofuran-3-ylmethyl-pyrrolidin-1-yl)-3-methyl-b-
utan-1-one (27): A solution of carbamate 26 (111 mg, 0.28 mmol) in
DCM (10 mL) was treated with TFA (1 mL) at room temperature. After
2 h, the reaction mixture was concentrated, diluted with EtOAc,
washed with saturated aqueous NaHCO.sub.3 and brine, dried over
Na.sub.2SO.sub.4, filtered and concentrated to afford 67 mg (80%)
of 27 as a light yellow oil. The product was used without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.89 (d,
J=8.1 Hz, 1H), 7.47-7.44 (m, 2H), 7.32-7.27 (m, 3H), 4.54-4.49 (m,
1H), 3.59-3.53 (m, 2H), 3.33 (d, J=13.5 Hz, 1H), 2.50 (dd, J=10.8,
13.5 Hz, 1H), 2.03-1.72 (m, 6H), 1.04 (d, J=7.2 Hz, 3H), 0.99 (d,
J=7.0 Hz, 3H) ppm.
[0189] F.
{1S-[1S-(2S-Benzofuran-3-ylmethyl-pyrrolidine-1-carbonyl)-2-meth-
yl-propylcarbamoyl]-ethyl}-carbamic acid tert-butyl ester (28): A
solution of N-Boc L-alanine (46 mg, 0.24 mmol) in NMP (3 mL) was
treated with HATU (72 mg, 0.19 mmol) followed by N-methylmorpholine
(0.1 mL, 0.9 mmol) at room temperature. After 10 min, amine 27 (41
mg, 0.14 mmol) in NMP (5 mL) was added dropwise. After 16 h, the
reaction was diluted with EtOAc, washed with saturated NaHCO.sub.3,
1M HCl, and brine, dried over Na.sub.2SO.sub.4, filtered and
concentrated. The residual oil was purified by flash silica gel
chromatography (1:1 hexane/EtOAc) to afford 62 mg (93%) of 28 as a
colorless oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.85 (d,
J=6.6 Hz, 1H), 7.48-7.44 (m, 2H), 7.33-7.25 (m, 3H), 6.93 (d, J=8.7
Hz, 1H), 5.08 (d, J=7.8 Hz, 1H), 4.62 (dd, J=6.3, 8.7 Hz, 1H),
4.50-4.43 (m, 1H), 4.23-4.16 (m, 1H), 3.74-3.55 (m, 3H), 3.32 (dd,
J=2.4, 14.1 Hz, 1H), 2.49 (dd, J=10.8, 13.5 Hz, 1H), 2.14-1.71 (m,
6H), 1.46 (s, 9H), 1.37 (d, J=6.9 Hz, 3H), 1.02 (d, J=6.9 Hz, 3H),
0.97 (d, J=7.2 Hz, 3H) ppm.
[0190] G.
2S-Amino-N-[1S-(2S-benzofuran-3-ylmethyl-pyrrolidine-1-carbonyl)-
-2-methyl-propyl]-propionamide (29): A solution of carbamate 28 (62
mg, 0.13 mmol) in DCM (10 mL) was treated with TFA (1 mL) at room
temperature. After 1.5 h, the reaction was concentrated, diluted
with EtOAc, washed with saturated NaHCO.sub.3 and brine, dried over
Na.sub.2SO.sub.4, filtered and concentrated. The residue was
purified by flash silica gel chromatography (5% MeOH/DCM) to afford
38 mg (72%) of 29 as a colorless oil. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta. 7.92 (d, J=9.3 Hz, 1H), 7.87-7.84 (m, 1H), 7.48-7.44
(m, 2H), 7.32-7.23 (m, 2H), 4.59 (dd, J=6.9, 9.3 Hz, 1H), 4.52-4.45
(m, 1H), 3.84-3.76 (m, 1H), 3.67-3.60 (m, 1H), 3.57-3.50 (m, 1H),
3.34 (dd, J=3.0, 13.0 Hz, 1H), 2.50 (dd, J=10.5, 13.8 Hz, 1H),
2.16-1.91 (m, 3H), 1.82-1.69 (m, 2H), 1.65 (bs, 2H), 1.38 (d, J=7.2
Hz, 3H), 1.03 (d, J=6.9 Hz, 3H), 0.99 (d, J=6.9 Hz, 3H) ppm. The
free amine (29) was diluted with Et.sub.2O and treated with HCl (g)
to form a white solid. The solution was concentrated and the solid
was triturated with Et.sub.2O and hexanes to provide
29.cndot.HCl.
##STR00043##
TABLE-US-00005 TABLE 5 R.sub.11 MS K.sub.D Entry A.sub.1 R.sub.1b Y
Z R.sub.14-17 (M + H).sup.+ Range 5-39 H Me iPr (S)--OPh H 464.2 A
5-40 H Me tBu (S)--OPh H 478.3 A 5-41 H Me iPr H H 372.2 A 5-42 H
Me cHex (S)--OPh H 504.2 A 5-43 Me Me cHex (S)--OPh H 518.2 A 5-44
H Et iPr (S)--OPh H 478.2 A 5-45 Me Me iPr (S)--(S)--OPh H 478.2 A
5-46 H H iPr H H 358.3 D 5-47 H Me cHex H H 412.3 A 5-48 Me Me cHex
H H 426.2 A 5-49 H Me iPr H 5-Me 386.3 A (R.sub.15) 5-50 Me Me iPr
H 5-Me 400.3 A (R.sub.15) 5-51 Me Me iPr H 5-F 404.2 A (R.sub.15)
5-52 H H iPr (S)--OPh H 450.2 C 5-53 H (R)--Me iPr (S)--OPh H 464.2
C 5-54 H Me Et (S)--OPh H 450.2 A 5-55 H Et Et (S)--OPh H 464.2 B
5-56 H Et cHex (S)--OPh H 518.2 B 5-57 Me Me iPr H H 386.3 A 5-58 H
Et iPr H H 386.2 B 5-59 H Me Et H H 358.3 B 5-60 H Me
--CH(Me)OCH.sub.2C.ident.CH H H 412.2 A 5-61 H Me iPr H 5-Cl 406.2
A (R.sub.15) 5-62 Me Me iPr H 5-Cl 420.2 A (R.sub.15) 5-63 H Me iPr
H 5-BnO 478.2 B (R.sub.15) 5-64 H gem- iPr H H 386.3 D di-Me 5-65
Ac Me iPr H H 414.4 D 5-66 H.sub.2NCO Me iPr H H 416.2 D 5-67 HCO
Me iPr H H 400.3 D 5-68 Et Me iPr H H 400.3 C 5-69 iPr Me iPr H H
413.3 C 5-70 cPrCH.sub.2 Me iPr H H 426.2 C 5-71 HC.ident.CCH.sub.2
Me iPr H H 409.2 D 5-72 (CH.sub.2).sub.2 iPr H H 384.3 B 5-73
CH.sub.2 iPr H H 370.2 D 5-74 (CH.sub.2).sub.3 iPr H H 398.4 D
Example 7
[0191] This example illustrated pyrrolidine derivatives of Table
6.
##STR00044##
[0192] Preparation of
2-Amino-N-{1-[2-(5-hydroxy-benzofuran-3-ylmethyl)-pyrrolidine-1-carbonyl]-
-2-methyl-propyl}-propionamide (32):
[0193] A.
(1-{1-[2-(5-Hydroxy-benzofuran-3-ylmethyl)-pyrrolidine-1-carbony-
l]-2-methyl-propylcarbamoyl}-ethyl)-carbamic acid tert-butyl ester
(31): A mixture of 30 (0.52 g, 0.90 mmol) and 10% Pd-on-carbon
(0.05 g) in EtOAc (25 mL) was placed on a Parr apparatus and
pressurized to 45 PSI H.sub.2 atmosphere. The reaction mixture was
shaken for 24 h. TLC analysis revealed only unconsumed starting
material therefore the catalyst was removed by filtration and the
clarified filtrate was concentrated to dryness. The residue was
redissolved in EtOAc (25 mL) and 10% Pd-on-carbon (0.208 g) was
added. The reaction mixture was shaken under a H.sub.2 atmosphere
(45 PSI) for 4 h at which time a second portion of palladium
catalyst (0.05 g) was added. Hydrogenation was continued until all
of the starting material was consumed (.about.2 h). The catalyst
was removed by filtration and the filtrate was concentrated under
reduced pressure. The crude product was purified by flash silica
gel chromatography (EtOAc/hexane, 1:1) to afford 0.37 g (84%) of 31
as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) 87.37 (s, 1H);
7.33-7.31 (m, 1H); 7.28-7.26 (m, 1H), 6.88-6.85 (m, 2H); 5.18 (br,
1H); 4.56 (t, 1H); 4.45-4.24 (m, 3H); 3.82-3.74 (m, 1H); 3.66-3.58
(m, 1H); 3.22 (d, 1H); 2.44-2.36 (m, 1H); 2.12-2.09 (m, 1H);
2.03-1.89 (m, 2H); 1.73-1.67 (m, 2H); 1.45 (s, 9H); 1.37 (d, 3H);
1.02-0.97 (m, 6H) ppm.
[0194] B.
2-Amino-N-{1-[2-(5-hydroxy-benzofuran-3-ylmethyl)-pyrrolidine-1--
carbonyl]-2-methyl-propyl}-propionamide (32): To a solution of 31
(0.04 g, 0.082 mmol) in DCM (5 mL) was added TFA (1 mL) at ambient
temperature. After 1 h, the solvent was removed under reduced
pressure. The residue was dissolved in EtOAc and washed with
aqueous NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered and concentrated. The crude product was purified by flash
silica gel chromatography (10% MeOH/DCM) to afford 0.011 g (37%) of
32 as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.8.54
(d, 1H); 7.37 (s, 1H); 7.31 (d, 1H); 7.09 (d, 1H); 6.83 (dd, 1H);
4.64 (t, 1H); 4.56-4.51 (m, 1H); 4.09-3.93 (m, 2H); 3.73-3.65 (m,
1H); 3.36 (dd, 1H); 2.35 (t, 1H); 2.19-1.94 (m, 3H); 1.77-1.69 (m,
2H); 1.33 (d, 2H); 1.25-1.19 (m, 1H); 1.04-1.00 (m, 5H); 0.94 (t,
1H) ppm.
##STR00045##
TABLE-US-00006 TABLE 6 R.sub.11, 12, MS K.sub.D Entry A.sub.1
R.sub.1b Y Z R.sub.14-17 (M + H).sup.+ Range 6-75 H Me iPr H 5-OH
388.3 C (R.sub.15)
Example 8
[0195] This example illustrated pyrrolidine derivatives of Table
7.
##STR00046##
[0196] Preparation of
2-Amino-N-{1-[2-(5-methoxy-benzofuran-3-ylmethyl)-pyrrolidine-1-carbonyl]-
-2-methyl-propyl}-propionamide (34):
[0197] A.
(1-{1-[2-(5-Methoxy-benzofuran-3-ylmethyl)-pyrrolidine-1-carbony-
l]2-methyl-propylcarbamoyl}-ethyl)-carbamic acid tert-butyl ester
(33): To a solution of 32 (0.06 g, 0.12 mmol) in anhydrous DCM (3
mL) was added MeOH (10 .mu.L), Ph.sub.3P (0.036 g, 0.13 mmol), and
ADDP (0.037 g, 0.14 mmol). The reaction mixture was maintained at
ambient temperature for 16 h at which point TLC analysis revealed
incomplete reaction. A second portion of MeOH (100 .mu.L),
Ph.sub.3P (0.036 g, 0.13 mmol), and ADDP (0.037 g, 0.14 mmol) was
added and the reaction mixture was maintained for an additional 5 h
at ambient temperature. The reaction mixture was diluted with DCM
and washed twice with 1N NaOH, followed by brine, dried over
anhydrous Na.sub.2SO.sub.4, filtered and concentrated. The crude
product was purified by flash silica gel chromatography
(EtOAc/hexane, 2:1) to afford 0.057 g (91%) of 33 as a white solid.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.41 (s, 1H); 7.38-7.33
(m, 1H); 7.30-7.28 (m, 1H); 6.90 (dd, 1H); 6.77 (d, 1H); 4.98 (br,
1H); 4.64-4.59 (m, 1H); 4.48-4.43 (m, 1H); 4.21-4.14 (m, 1H); 3.88
(s, 3H); 3.72-3.53 (m, 2H); 3.30-3.25 (m, 1H); 2.51-2.43 (m, 1H);
2.13-1.72 (m, 5H); 1.45 (s, 9H); 1.37 (d, 3H); 1.03-0.95 (m, 6H)
ppm.
[0198] B.
2-Amino-N-{1-[2-(5-methoxy-benzofuran-3-ylmethyl)-pyrrolidine-1--
carbonyl]-2-methyl-propyl}-propionamide (34): To a solution of 33
(0.057 g, 0.11 mmol) in DCM (5 mL) was added TFA (1 mL) at ambient
temperature. After 1 h, the solvent was removed under reduced
pressure. The residue was dissolved in EtOAc and washed with
aqueous NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered and concentrated. The crude product was purified by flash
silica gel chromatography (10% MeOH/DCM) to afford 0.015 g (35%) of
34 as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.42
(m, 1H); 7.35 (d, 1H); 7.28 (m, 1H); 6.90 (dd, 1H); 4.60 (m, 1H);
4.48-4.45 (m, 1H); 3.89-3.76 (m, 4H); 3.65-3.56 (m, 2H); 3.31 (dd,
1H); 2.52-2.44 (m, 1H); 2.13-1.72 (m, 6H); 1.43-1.27 (m, 5H);
1.05-0.97 (m, 6H) ppm.
##STR00047##
TABLE-US-00007 TABLE 7 R.sub.11, 12, MS K.sub.D Entry A.sub.1
R.sub.1b Y Z R.sub.14-17 (M + H).sup.+ Range 7-76 H Me iPr H 5-MeO
402.2 C (R.sub.15) 7-77 H Me iPr H 5- 442.2 D cPrCH.sub.2O
(R.sub.15)
Example 9
[0199] This example illustrated pyrrolidine derivatives of Table
8.
##STR00048##
[0200] Preparation of
2-Amino-N-{2-methyl-1-[2-(5-pyridin-2-yl-benzofuran-3-ylmethyl)-pyrrolidi-
ne-1-carbonyl]-propyl}-propionamide (37):
[0201] A. Trifluoro-methanesulfonic acid
3-{1-[2-(2-tert-butoxycarbonylamino-propionylamino)-3-methyl-butyryl]-pyr-
rolidin-2-ylmethyl}-benzofuran-5-yl ester (35): To a solution of 32
(0.16 g, 0.32 mmol) and DIPEA (60 .mu.L, 0.32 mmol) in anhydrous
DCM (4 mL) was added N-phenyl-bis(trifluoromethanesulfonimide)
(0.14 g, 0.38 mmol) at 0.degree. C. After .about.10 min, the
reaction mixture was allowed to warm to ambient temperature and
then maintained for 16 h. The reaction mixture was concentrated and
the residue was dissolved in EtOAc, washed with water, brine, dried
over anhydrous Na.sub.2SO.sub.4, filtered and concentrated. The
crude product was purified by flash silica gel chromatography
(EtOAc/hexane, 1:1) to afford 126 mg (63%) of 35 as a white solid.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.73 (d, 1H); 7.55-7.48
(m, 2H); 7.20 (dd, 1H); 6.78-6.75 (m, 1H); 4.99 (br, 1H); 4.63-4.58
(m, 1H); 4.41-4.35 (m, 1H); 4.19 (m, 1H); 3.75-3.68 (m, 1H);
3.64-3.57 (m, 1H); 3.29 (dd, 1H); 2.54-2.46 (m, 1H); 1.99-1.84 (m,
3H); 1.71-1.66 (m, 2H); 1.45 (s, 9H); 1.37 (d, 3H); 1.02-0.94 (m,
6H) ppm.
[0202] B.
(1-{2-Methyl-1-[2-(5-pyridin-3-yl-benzofuran-3-ylmethyl)-pyrroli-
dine-1-carbonyl]-propylcarbamoyl}-ethyl)-carbamic acid tert-butyl
ester (36): A mixture of 35 (0.063 g, 0.10 mmol), K.sub.2CO.sub.3
(70 mg, 0.50 mmol), 3-pyridineboronic acid (0.015 g, 0.12 mmol),
and (Ph.sub.3P).sub.4Pd (5 mg, 3 mol %) in anhydrous toluene (5 mL)
was heated at 100.degree. C. in a sealed tube for 1 h. The reaction
mixture was cooled to room temperature, diluted with EtOAc, washed
with saturated aqueous NaHCO.sub.3, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. The crude product was
purified by flash silica gel chromatography (EtOAc) to afford 40 mg
(72%) of 36 as an oil. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta.8.94 (d, 1H); 8.59 (d, 1H); 8.01-7.95 (m, 1H); 7.74-7.64 (m,
1H); 7.58-7.37 (m, 4H); 6.94 (d, 1H); 4.61 (t, 1H); 4.50-4.47 (m,
1H); 4.30 (t, 1H0; 4.21 (br, 1H); 3.79-3.71 (m, 1H); 3.66-3.59 (m,
1H); 2.42-3.36 (m, 1H); 2.58-2.50 (m, 1H); 2.13-2.09 (m, 1H);
2.01-1.71 (m, 4H); 1.45 (m, 9H); 1.37 (d, 3H); 1.03-0.94 (m, 6H)
ppm.
[0203] C.
2-Amino-N-{2-methyl-1-[2-(5-pyridin-2-yl-benzofuran-3-ylmethyl)--
pyrrolidine-1-carbonyl]-propyl}-propionamide (37): To a solution of
36 (0.04 g, 0.07 mmol) in DCM (5 mL) was added TFA (1 mL) at
ambient temperature. After 1 h, the solvent was removed under
reduced pressure. The residue was dissolved in EtOAc and washed
with aqueous NaHCO.sub.3, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. The crude product was
purified by flash silica gel chromatography (10% MeOH/DCM) to
afford 0.024 g (76%) of 37 as a white solid. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.8.0 (s, 1H); 7.95 (d, 1H); 7.71-7.64
(m, 2H); 7.56-7.46 (m, 4H); 4.61-4.48 (m, 2H); 4.29 (t, 1H);
3.83-3.77 (m, 1H); 3.67-3.54 (m, 2H); 3.41 (dd, 1H); 2.58-2.49 (m,
1H); 2.13-1.70 (m, 5H); 1.40-1.25 (m, 5H); 1.04-0.84 (m 6H)
ppm.
##STR00049##
TABLE-US-00008 TABLE 8 R.sub.11, 12, MS K.sub.D Entry A.sub.1
R.sub.1b Y Z R.sub.14-17 (M + H).sup.+ Range 8-78 H Me iPr H
5-(4-Pyr) 449.2 B (R.sub.15) 8-79 H Me iPr H 5-(3-Pyr) 449.2 C
(R.sub.15)
Example 10
[0204] This example illustrated pyrrolidine derivatives of Table
9.
##STR00050## ##STR00051##
[0205] The Preparation of
2S-Amino-N-{2-methyl-1S-[2S-(2-pyridin-4-yl-benzofuran-3-ylmethyl)-pyrrol-
idine-1-carbonyl]-propyl}-propionamide (44):
[0206] A.
2S-(2-Bromo-benzofuran-3-ylmethyl)-pyrrolidine-1-carboxylic acid
tert-butyl ester (38): A solution of 22 (1.4 g, 4.7 mmol) in
CHCl.sub.3 (20 mL) was cooled to 0.degree. C. and treated with KOAc
(2.5 g, 26 mmol). A solution of bromine (0.3 mL, 5.8 mmol) in
CHCl.sub.3 (10 mL) was added dropwise over 30 min. Following
addition, the solution maintained a yellow orange color. After TLC
indicated consumption of starting material, the reaction mixture
was diluted with H.sub.2O, washed with saturated
Na.sub.2S.sub.2O.sub.8, dried over Na.sub.2SO.sub.4, filtered, and
concentrated. Purification of the residue by flash silica gel
chromatography (3:1 hexane/EtOAc) afforded 1.1 g (61%) of 38 as a
yellow oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.57-7.52 (m,
1H), 7.43-7.41 (m, 1H), 7.26-7.20 (m, 2H), 4.20 (m, 1H), 3.43-3.30
(m, 2H), 3.17-3.01 (m, 1H), 2.73-2.58 (m, 1H), 1.89-1.69 (m, 4H),
1.48 (s, 9H) ppm.
[0207] B. 2S-(2-Bromo-benzofuran-3-ylmethyl)-pyrrolidine (39): A
solution of 38 (1.1 g, 2.9 mmol) in DCM (20 mL) was treated with
TFA (2 mL) at room temperature. After 1.5 h, the reaction mixture
was concentrated, diluted with EtOAc, washed with saturated
NaHCO.sub.3, brine, dried over Na.sub.2SO.sub.4, filtered and
concentrated to afford 0.8 g of 39 as an orange oil which was used
without further purification. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta. 8.84 (br s, 1H), 7.42-7.39 (m, 2H), 7.28-7.21 (m, 2H),
3.70-3.66 (m, 1H), 3.48-3.39 (m, 1H), 3.31-3.21 (m, 2H) 2.95 (dd,
J=9.9 Hz, 13.5 Hz, 1H), 2.06-1.99 (m, 1H), 1.91-1.79 (m, 2H),
1.74-1.66 (m, 1H) ppm.
[0208] C.
{1S-[2S-(2-Bromo-benzofuran-3-ylmethyl)-pyrrolidine-1-carbonyl]--
2-methyl-propyl}-carbamic acid tert-butyl ester (40): A solution of
N-Boc L-valine (656 mg, 3.0 mmol) in NMP (6 mL) was treated with
HATU (1.2 g, 3.1 mmol) followed by N-methylmorpholine (0.4 mL, 3.6
mmol) at room temperature. After 10 min, crude 39 (0.8 g, 2.9 mmol)
in NMP (6 mL) was added dropwise. After 16 h, the reaction mixture
was diluted with EtOAc, washed with saturated NaHCO.sub.3, brine,
dried over Na.sub.2SO.sub.4, filtered and concentrated. The residue
was purified by flash silica gel chromatography (3:1 hexane/EtOAc)
to afford 853 mg (61%) of 40 as a yellow foam. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta. 7.89-7.86 (m, 1H), 7.42-7.38 (m, 1H),
7.29-7.25 (m, 3H), 5.35 (d, J=9.3 Hz, 1H), 4.55-4.51 (m, 1H), 4.29
(dd, J=6.0, 9.6 Hz, 1H), 3.71-3.66 (m, 1H), 3.27 (dd, J=3.3, 13.5
Hz, 1H), 2.45 (dd, J=10.8, 13.5 Hz, 1H), 2.15-1.92 (m, 3H),
1.79-1.74 (m, 2H), 1.42 (s, 9H), 1.03 (d, J=6.9 Hz, 3H), 0.96 (d,
J=7.2 Hz, 3H) ppm.
[0209] D.
2S-Amino-1-[2S-(2-bromo-benzofuran-3-ylmethyl)-pyrrolidin-1-yl]--
3-methyl-butan-1-one (41): A solution of carbamate 40 (853 mg, 1.8
mmol) in DCM (20 mL) was treated with TFA (2 mL) at room
temperature. After 1.5 h, the reaction mixture was concentrated,
diluted with EtOAc, washed with saturated NaHCO.sub.3, brine, dried
over Na.sub.2SO.sub.4, filtered and concentrated to afford 0.66 g
of 41 as a yellow foam which was used without further purification.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.92-7.89 (m, 1H),
7.44-7.39 (m, 1H), 7.30-7.25 (m, 3H), 4.55 (m, 1H), 3.66-3.51 (m,
2H), 3.29 (dd, J=2.4, 13.5 Hz, 1H), 2.45 (dd, J=11.1, 12.9 Hz, 1H),
2.15-1.97 (m, 2H), 1.78-1.71 (m, 2H), 1.06 (d, J=6.3 Hz, 3H), 1.01
(d, J=6.6 Hz, 3H) ppm.
[0210] E.
(1S-{1S-[2S-(2-Bromo-benzofuran-3-ylmethyl)-pyrrolidine-1-carbon-
yl]-2-methyl-propylcarbamoyl}-ethyl)-carbamic acid tert-butyl ester
(42): A solution of N-Boc-L-alanine (394 mg, 2.1 mmol) in NMP (6
mL) was treated with HATU (763 mg, 2.0 mmol) followed by
N-methylmorpholine (0.3 mL, 2.7 mmol) at room temperature. After 10
min, crude 41 (0.66 mg, 1.7 mmol) in NMP (6 mL) was added dropwise.
After 16 h, the reaction mixture was diluted with EtOAc, washed
with saturated NaHCO.sub.3, 1M HCl, brine, dried over
Na.sub.2SO.sub.4, filtered and concentrated. The residual oil was
purified by flash silica gel chromatography (2:1
hexane/EtOAc-to-1:1 hexane/EtOAc) to afford 0.9 g (96%) of 42 as an
off-white foam. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.86-7.84
(m, 1H), 7.43-7.40 (m, 1H), 7.29-7.25 (m, 2H), 7.01 (d, J=8.7 Hz,
1H), 5.10 (d, J=6.6 Hz, 1H), 4.62 (dd, J=6.3, 8.7 Hz, 1H),
4.53-4.48 (m, 1H), 4.23-4.19 (m, 1H), 3.75-3.66 (m, 2H), 3.27 (dd,
J=3.3, 13.5 Hz, 1H), 2.45 (dd, J=10.5, 13.5 Hz, 1H), 2.16-2.08 (m,
2H), 2.02-1.97 (m, 2H), 1.79-1.73 (m, 2H), 1.45 (s, 9H), 1.36 (d,
J=6.9 Hz, 3H), 1.02 (d, J=6.3 Hz, 3H), 0.97 (d, J=7.2 Hz, 3H)
ppm.
[0211] F.
(1S-{2-Methyl-1S-[2S-(2-pyridin-4-yl-benzofuran-3-ylmethyl)-pyrr-
olidine-1-carbonyl]-propylcarbamoyl}-ethyl)-carbamic acid
tert-butyl ester (43): A solution of 42 (36 mg, 0.07 mmol) in
toluene (4 mL) was treated with K.sub.2CO.sub.3 (38 mg, 0.28 mmol)
and Pd(PPh.sub.3).sub.4 (2 mg) followed by 4-pyridine boronic acid
(12 mg, 0.1 mmol) in EtOH (2 mL). The reaction was heated to reflux
overnight. The solution was cooled to room temperature, diluted
with H.sub.2O, extracted with EtOAc, brine, dried over
Na.sub.2SO.sub.4, filtered and concentrated to afford 44 mg of 43
as a light yellow oil which was used without further purification.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 8.74 (d, J=5.1 Hz, 1H),
7.99 (d, J=5.7 Hz, 1H), 7.86-7.81 (m, 1H), 7.71-7.64 (m, 1H),
7.56-7.46 (m, 3H), 7.41-7.27 (m, 2H), 6.87 (d, J=8.7 Hz, 1H), 5.01
(m, 1H), 4.62 (app t, J=8.7 Hz, 1H), 4.56-4.46 (m, 1H), 4.20 (m,
1H), 3.72-3.67 (m, 2H), 2.84 (dd, J=11.7, 13.5 Hz, 1H), 2.16-1.93
(m, 2H), 1.78-1.62 (m, 2H), 1.46 (s, 9H), 1.37 (d, J=7.2 Hz, 3H),
1.04 (d, J=6.6 Hz, 3H), 0.98 (d, J=6.3 Hz, 3H) ppm.
[0212] G.
2S-Amino-N-{2-methyl-1S-[2-(2S-pyridin-4-yl-benzofuran-3-ylmethy-
l)-pyrrolidine-1-carbonyl]-propyl}-propionamide (44): A solution of
43 (44 mg, 0.08 mmol) in DCM (10 mL) was treated with TFA (1 mL) at
room temperature. After 1.5 h, the reaction mixture was
concentrated, diluted with EtOAc, washed with saturated
NaHCO.sub.3, brine, dried over Na.sub.2SO.sub.4, filtered and
concentrated. The residue was purified by reverse-phase HPLC (C18;
10-100% ACN/H.sub.2O with 0.1% AcOH buffer). The fractions
containing pure product were lyophilized to afford 21 mg of 44 as a
white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 8.75 (bs,
1H), 8.00 (m, 1H), 7.90-7.82 (m, 1H), 7.71-7.64 (m, 1H), 7.55-7.47
(m, 3H), 7.38-7.27 (m, 2H), 4.61-4.52 (m, 1H), 3.83-3.62 (m, 2H),
3.07-3.00 (m, 1H), 2.84 (dd, J=11.1, 13.5 Hz, 1H), 2.16-1.94 (m,
2H), 1.74-1.61 (m, 2H), 1.41 (d, J=6.9 Hz, 3H), 1.05 (d, J=6.6 Hz,
3H), 0.99 (d, J=6.9 Hz, 3H) ppm.
##STR00052##
TABLE-US-00009 TABLE 9 MS K.sub.D Entry A.sub.1 R.sub.1b Y Z
X.sub.2 R.sub.11 (M + H).sup.+ Range 9-80 H Me iPr H O Br 450.4 B
9-81 H Me iPr H O 4-Pyr 449.2 A 9-82 H Me iPr H O 3-Pyr 449.2 B
9-83 H Me iPr H O 5-[(2- 479.2 B MeO)Pyr] 9-84 H Me iPr H O 2-Pyr
449.3 A 9-85 H Me iPr H O 2-thiazoyl 455.2 B 9-86 H Me iPr H O
2-pyrazine 450.1 A 9-87 H Me iPr H O Ph 448.3 B 9-88 H Me iPr H N
Ph, (R.sub.12 is H) 447.2 C
Example 11
[0213] This example illustrated pyrrolidine derivatives of Table
10.
##STR00053## ##STR00054##
[0214] The Preparation of
3-(3-{1-[2-(2-Amino-propionylamino)-3-methyl-butyryl]-pyrrolidin-2-ylmeth-
yl}-benzofuran-2-yl)-propionic acid ethyl ester (52):
[0215] A.
2-(2-Bromo-benzofuran-3-ylmethyl)-pyrrolidine-1-carboxylic acid
benzyl ester (46): To a cooled (0.degree. C.) solution of 45 (4.1
g, 12.2 mmol) in CHCl.sub.3 (70 mL) was added KOAc (3.6 g, 36.7
mmol) followed by the dropwise addition of Br.sub.2 (2.3 g, 14.6
mmol) in CHCl.sub.3 (30 mL) over .about.20 min. After 30 min, the
reaction mixture was diluted with brine and saturated with
Na.sub.2S.sub.2O.sub.8. The product was extracted with DCM and the
combined DCM extracts were washed with brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated to afford 5 g (quant.)
of 46 as an orange oil which was used without further purification.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.75-7.72 & 6.98
(rotamers, m and app t, J=7.5 Hz, 1H), 7.44-7.10 (m, 8H), 5.24-5.17
(m, 2H), 4.28 & 4.17 (rotamer, 2 m, 1H), 3.54-3.38 (m, 2H),
3.21 & 3.00 (rotamer, 2 dd, J=2.4, 13.5 Hz, 1H), 2.72-2.55 (m,
1H), 1.97-1.75 (m, 4H) ppm.
[0216] B.
2-[2-(2-Ethoxycarbonyl-vinyl)-benzofuran-3-ylmethyl]pyrrolidine--
1-carboxylic acid benzyl ester (47): A solution containing crude 46
(5.0 g, 12.1 mmol), ethyl acrylate (2.7 g, 27.7 mmol),
tetrabutylammonium chloride (3.5 g, 12.6 mmol), NaHCO.sub.3 (2.0 g,
23.8 mmol), and Pd(OAc).sub.2 (0.107 g, 0.46 mmol) in DMF (40 mL)
was heated at 100.degree. C. for 16 h. After cooling to ambient
temperature, the reaction mixture was diluted with diethyl ether
and washed with water, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. The crude product was
purified by flash silica gel chromatography (EtOAc/hexane, 1:3) to
afford 3.7 g (70%) of 47 as an orange-colored oil. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.7.81 & 6.99 (rotamer, app d, J=7.5
Hz, app t, J=7.5 Hz, 1H), 7.61 (dd, J=15.9, 18.3 Hz, 1H), 7.47-7.20
(m, 8H), 6.58 (dd, J=5.7, 15.6 Hz, 1H), 5.27-5.16 (m, 2H), 4.24 (q,
J=7.2 Hz, 2H), 4.17-4.08 (m, 1H), 3.51-3.35 (m, 2H), 3.38 &
3.17 (rotamer, 2 dd, J=3.6, 14.1 Hz, 1H), 2.89-2.69 (m, 1H),
1.94-1.64 (m, 4H), 1.36 (t, J=7.2 Hz, 2H) ppm.
[0217] C. 3-(3-Pyrrolidin-2-ylmethyl-benzofuran-2-yl)-propionic
acid ethyl ester (48): A mixture containing 47 (1.0 g, 2.3 mmol)
and 10% Pd-on-carbon (.about.1 g) in anhydrous MeOH (20 mL) was
placed under a hydrogen atmosphere (45 PSI) and shaken using a Parr
apparatus for 1 h. The catalyst was removed by filtration and the
solids were washed with EtOAc and MeOH. The clarified filtrate was
concentrated to afford 634 mg (91%) of 48 as an orange oil which
was used without further purification. .sup.1H NMR (CDCl.sub.3, 300
MHz) .delta.7.51-7.49 (m, 1H), 7.38-7.35 (m, 1H), 7.21-7.17 (m,
2H), 4.16-4.09 (m, 2H), 3.68-3.59 (m, 2H), 3.12-3.07 (m, 2H),
2.88-2.73 (m, 4H), 1.84-1.69 (m, 4H), 1.43-1.39 (m, 1H), 1.26-1.20
(m, 3H) ppm.
[0218] D.
3-{3-[1-(2-tert-Butoxycarbonylamino-3-methyl-butyryl)-pyrrolidin-
-2-ylmethyl]-benzofuran-2-yl}-propionic acid ethyl ester (49): A
solution containing Boc-L-valine (352 mg, 1.6 mmol) in NMP (3 mL)
was treated with HATU (543 mg, 1.4 mmol) followed by NMM (0.2 mL,
1.8 mmol) at ambient temperature. After 10 min, amine 48 (0.4 g,
1.3 mmol) in NMP (5 mL) was added in a dropwise fashion. After 16
h, the reaction mixture was diluted with diethyl ether and washed
successively with NaHCO.sub.3, 1M HCl, water, and brine. The
organic extract was dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated to afford 630 mg (96%) of 49 which was used
without further purification. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta.7.82-7.79 (m, 1H), 7.38-7.35 (m, 1H), 7.28-7.21 (m, 2H),
5.37 (d, J=9.3 Hz, 1H), 4.50-4.44 (m, 1H), 4.31 (dd, J=6.0, 9.0 Hz,
1H), 4.14 (q, J=6.9 Hz, 2H), 3.72-3.60 (m, 3H), 3.38 (t, J=7.2 Hz,
1H), 3.29 (dd, J=3.0, 13.5 Hz, 1H), 3.12 (app t, J=7.5 Hz, 2H),
2.80-2.74 (m, 4H), 2.46-2.35 (m, 2H), 2.11-1.92 (m, 2H), 1.81-1.73
(m, 1H), 1.69-1.65 (m, 1H), 1.44 (s, 9H), 1.25 (t, J=6.0 Hz, 3H),
1.03 (d, J=6.3 Hz, 3H), 0.96 (d, J=6.6 Hz, 3H) ppm. Mass spectrum:
m/z 501 [M+H].sup.+; and, 523 [M+Na].sup.+.
[0219] E.
3-{3-[1-(2-Amino-3-methyl-butyryl)-pyrrolidin-2-ylmethyl]-benzof-
uran-2-yl}-propionic acid ethyl ester (50): To a solution of 49
(302 mg, 0.6 mmol) in DCM (10 mL) was added TFA (2 mL) at ambient
temperature. After 2 h, the solvent was removed under reduced
pressure. The residue was dissolved in EtOAc and washed with
aqueous NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered and concentrated to afford 235 mg (97%) of 50 as an orange
oil which was used without further purification. .sup.1H NMR
(CDCl.sub.3, 300 MHz) 87.86-7.83 (m, 1H), 7.43-7.34 (m, 1H),
7.27-7.19 (m, 3H), 4.49 (m, 1H), 4.14 (q, J=6.9 Hz, 2H), 3.60-3.53
(m, 2H), 3.32 (d, J=12.9 Hz, 1H), 3.12 (app t, J=7.2 Hz, 2H),
2.81-2.74 (m, 2H), 2.42 (app t, J=12.3 Hz, 1H), 2.10-1.91 (m, 2H),
1.74-1.66 (m, 2H), 1.24 (t, J=7.2 Hz, 3H), 1.06-0.99 (m, 61-1) ppm.
Mass spectrum: m/z 401 [M+H].sup.+.
[0220] F.
3-(3-{1-[2-(2-tert-Butoxycarbonylamino-propionylamino)-3-methyl--
butyryl]-pyrrolidin-2-ylmethyl}-benzofuran-2-yl)-propionic acid
ethyl ester (51): A solution containing Boc-L-alanine (69 mg, 0.37
mmol) in NMP (3 mL) was treated with HATU (131 mg, 0.34 mmol)
followed by NMM (0.1 mL, 0.9 mmol) at ambient temperature. After 10
min, amine 50 (111 mg, 0.28 mmol) in NMP (5 mL) was added in a
dropwise fashion. After 5 h, the reaction mixture was diluted with
diethyl ether and washed successively with NaHCO.sub.3, 1M HCl,
water, and brine. The organic extract was dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated to afford 160 mg
(quant.) of 51 which was used without further purification. .sup.1H
NMR (CDCl.sub.3, 300 MHz) .delta.7.81-7.78 (m, 1H), 7.38-7.36 (m,
1H), 7.28-7.21 (m, 3H), 6.86 (d, J=8.7 Hz, 1H), 5.04 (d, J=6.9 Hz,
1H), 4.61 (dd, J=6.3, 8.7 Hz, 1H), 4.48-4.42 (m, 1H), 4.22 (m, 1H),
4.13 (q, J=6.9 Hz, 2H), 3.73-3.62 (m, 2H), 3.41-3.36 (m, 2H), 3.28
(dd, J=3.0, 13.5 Hz, 1H), 3.11 (app t, J=6.9 Hz, 2H), 2.85-2.73 (m,
4H), 2.38 (app t, J=8.1 Hz, 2H), 2.13-1.98 (m, 2H), 1.80-1.64 (m,
1H), 1.45 (s, 9H), 1.37 (d, J=6.9 Hz, 3H), 1.26 (t, J=7.5 Hz, 3H),
1.03-0.95 (m, 6H) ppm. Mass spectrum: m/z 572 [M+H].sup.+; and, 594
[M+Na].sup.+.
[0221] G.
3-(3-{1-[2-(2-Amino-propionylamino)-3-methyl-butyryl]-pyrrolidin-
-2-ylmethyl}-benzofuran-2-yl)-propionic acid ethyl ester (52): To a
solution of 51 (160 mg, 0.28 mmol) in DCM (10 mL) was added TFA (2
mL) at ambient temperature. After 2.5 h, the solvent was removed
under reduced pressure. The residue was dissolved in EtOAc and
washed with aqueous NaHCO.sub.3, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated. A portion (.about.50%)
of the crude material was purified by reverse-phase HPLC (C18,
10-100% ACN/water containing 0.1% HOAc) to afford 56 mg of 52 as a
white solid. .sup.1H NMR (DMSO, 300 MHz) 58.03 (d, J=8.7 Hz, 1H),
7.77 (m, 1H), 7.43-7.41 (m, 1H), 7.21 (m, 2H), 4.37 (app t, J=8.1
Hz, 1H), 4.19 (m, 1H), 4.01 (q, J=7.2 Hz, 2H), 3.65 (m, 1H), 3.56
(app d, J=6.6 Hz, 1H), 3.28 (m, 1H), 3.06-3.01 (m, 3H), 2.68 (app
t, J=7.2 Hz, 2H), 2.07-1.96 (m, 1H), 1.63 (m, 1H), 1.54 (m, 1H),
1.13-1.09 (m, 6H), 0.90 (d, J=6.3 Hz, 3H), 0.85 (d, J=6.3 Hz, 3H)
ppm. Mass spectrum: m/z 472 [M+H].sup.+ and, 494 [M+Na].sup.+.
##STR00055##
TABLE-US-00010 TABLE 10 MS K.sub.D Entry A.sub.1 R.sub.1b Y Z
X.sub.2 R.sub.11 (M + H).sup.+ Range 10-89 H Me iPr H O
--CH.sub.2CH.sub.2CO.sub.2Et 472.3 C 10-90 H Me iPr H O
--CH.sub.2CH.sub.2CO.sub.2H 444.2 B
Example 12
[0222] This example illustrated pyrrolidine derivatives of Table 11
and Table 12.
##STR00056## ##STR00057##
[0223] The Preparation of Ornithine-derived Lactam (59):
[0224] A.
3-{3-[1-(5-Benzyloxycarbonylamino-2-tert-butoxycarbonylamino-pen-
tanoyl)-pyrrolidin-2-ylmethyl]-benzofuran-2-yl}-propionic acid
ethyl ester (53): A solution containing Boc-L-ornithine (2.3 g, 6.3
mmol) in NMP (5 mL) was treated with HATU (2.4 g, 6.3 mmol)
followed by NMM (1.5 mL, 13.7 mmol) at ambient temperature. After
10 min, amine 48 (1.6 g, 5.3 mmol) in NMP (10 mL) was added in a
dropwise fashion. After 16 h, the reaction mixture was diluted with
diethyl ether and washed successively with NaHCO.sub.3, 1M HCl,
water, and brine. The organic extract was dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated to afford 3.0 g (87%)
of 53 as an orange-colored oil which was used without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.78-7.75
(m, 1H), 7.40-7.20 (m, 8H), 5.48 (d, J=8.4 Hz, 1H), 5.10 (s, 2H),
4.48-4.42 (m, 1H), 4.17-4.09 (m, 2H), 3.64-3.56 (m, 1H), 3.27-3.19
(m, 1H), 3.12 (app t, J=7.8 Hz, 1H), 2.81-2.74 (m, 2H), 2.52-2.35
(m, 1H), 2.09-1.95 (m, 2H), 1.83-1.63 (m, 4H), 1.45 (s, 9H),
1.29-1.19 (m, 6H) ppm.
[0225] B.
3-{3-[1-(5-Benzyloxycarbonylamino-2-tert-butoxycarbonylamino-pen-
tanoyl)-pyrrolidin-2-ylmethyl]-benzofuran-2-yl}-propionic acid
(54): A solution containing the crude 53 (3.0 g, 4.6 mmol) in THF
(20 mL) was treated with 3 M NaOH (8 mL) at ambient temperature.
The reaction mixture was then warmed to gentle reflux and
maintained for 2.5 h. The reaction mixture was concentrated in
vacuo and the residue was dissolved in EtOAc. The organic solution
was washed with 1N HCl then dried over anhydrous Na.sub.2SO.sub.4,
filtered and concentrated to afford .about.3 g (quant.) of 54 as an
off-white-colored foam which was used directly without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.69-7.67
(m, 1H), 7.39-7.20 (m, 8H), 5.70 (d, J=8.4 Hz, 1H), 5.13-5.09 (m,
2H), 4.50-4.45 (m, 1H), 3.67-3.54 (m, 1H), 3.22-3.18 (m, 2H), 3.13
(t, J=6.9 Hz, 1H), 2.85-2.78 (m, 2H), 2.09-1.97 (m, 3H), 1.76-1.62
(m, 4H), 1.43 (s, 9H) ppm.
[0226] C.
3-{3-[1-(5-Amino-2-tert-butoxycarbonylamino-pentanoyl)-pyrrolidi-
n-2-ylmethyl]-benzofuran-2-yl}-propionic acid (55): A solution of
the crude 54 (.about.3 g, 4.8 mmol) in MeOH (30 mL) was charged
with 10% Pd-on-carbon (.about.1 g) and placed under an atmosphere
of hydrogen gas (45 PSI). The reaction mixture was shaken using a
Parr apparatus for 2 h. After removal of the catalyst by filtration
over celite, the clarified filtrate was concentrated in vacuo. The
crude residue was taken up in DCM and dried using anhydrous
Na.sub.2SO.sub.4, filtered and concentrated to afford 2.3 g
(quant.) of 55 as a foamy residue which was used without further
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.51 (m,
1H), 7.34-7.32 (m, 1H), 7.18-7.15 (m, 2H), 6.19 (m, 1H), 4.36 (m,
2H), 3.62-3.48 (m, 2H), 3.10-2.99 (m, 2H), 2.85-1.81 (m, 2H),
2.66-2.60 (m, 2H), 1.99-1.71 (m, 6H), 1.41 (s, 9H) ppm. Mass
spectrum, m/z 488 [M+H].sup.+.
[0227] D. Boc-protected Des-alanine Ornithine-derived Lactam (56):
A solution containing 55 (2.3 g, 4.7 mmol) in 1:1 NMP/DCM (30 mL)
was treated with HATU (2.1 g, 5.5 mmol) and NMM (0.6 mL, 5.5 mmol)
at ambient temperature. After 18 h, the reaction mixture was
diluted with diethyl ether and washed successively with aqueous
Na.sub.2SO.sub.4, dilute aqueous HCl, water, brine, then dried over
anhydrous Na.sub.2SO.sub.4, filtered and concentrated to afford 1.5
g (68%) of 56 as an off-white-colored foam which was used without
further purification. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta.7.70-7.66 (m, 1H), 7.33 (m, 1H), 7.19-7.18 (m, 2H), 5.70 (m,
1H), 4.42 (m, 1H), 4.10 (m, 1H), 3.55 (m, 3H), 3.24-3.09 (m, 4H),
2.61-2.46 (m, 2H), 1.63 (m, 7H), 1.44 (s, 91-1) ppm. Mass spectrum,
m/z 470 [M+H].sup.+, 492 [M+Na].sup.+.
[0228] E. Des-alanine Ornithine-derived Lactam (57): To a solution
of crude 56 (1.5 g, 3.1 mmol) in DCM (20 mL) was added TFA (4 mL)
at ambient temperature. After 2 h, the solvent was removed under
reduced pressure. The residue was dissolved in EtOAc and washed
with aqueous NaHCO.sub.3, and brine. The combined aqueous washes
were back extracted with 5% MeOH/DCM. The combined organic extracts
were dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated to afford 0.8 g (68%) of 57 as an off-white-colored
foam which was used directly in the next reaction. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.7.41-7.38 (m, 1H), 7.27-7.20 (m, 3H),
5.99 (d, J=9.3 Hz, 1H), 4.39-4.33 (m, 1H), 3.96-3.84 (m, 1H),
3.70-3.65 (m, 2H), 3.55-3.38 (m, 2H), 3.20-3.05 (m, 2H), 2.90-2.83
(m, 3H), 2.77-2.71 (m, 2H), 2.66-2.62 (m, 2H), 2.19-1.98 (m, 2H),
1.78-1.66 (m, 2H), 1.38-1.08 (m, 2H) ppm.
[0229] F. Boc-protected Ornithine-derived Lactam (58): A solution
containing Boc-L-alanine (526 mg, 2.8 mmol) in NMP (5 mL) was
treated with HATU (1.1 g, 2.9 mmol) followed by NMM (0.3 mL, 2.9
mmol) at ambient temperature. After 10 min, crude amine 57 (0.8 mg,
2.2 mmol) in NMP (10 mL) was added in a dropwise fashion. After 2
d, the reaction mixture was diluted with diethyl ether and washed
successively with NaHCO.sub.3, 1M HCl, water, and brine. The
organic extract was dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated to afford .about.1 g (84%) of 58 as a
yellow-colored oil which was used without further purification.
Mass spectrum: m/z 541 [M+H].sup.+, and 563 [M+Na].sup.+.
[0230] G. Ornithine-derived Lactam (59): To a solution of crude 58
(.about.1 g, 1.9 mmol) in DCM (10 mL) was added TFA (4 mL) at
ambient temperature. After 1 h, the solvent was removed under
reduced pressure. The residue was dissolved in EtOAc and washed
with aqueous NaHCO.sub.3, and brine. The combined aqueous washes
were back extracted with 5% MeOH/DCM and the combined organic
extracts were dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated. A portion of the crude product was purified by
reverse-phase HPLC (C18, 10-100% ACN/water containing 0.1% HOAc) to
afford 28 mg of 59 as a white solid. .sup.1H NMR (DMSO, 300 MHz)
.delta.8.14 (m, 1H), 7.88 (m, 1H), 7.68-7.66 (m, 1H), 7.35 (m, 1H),
7.12 (m, 2H), 4.43 (m, 1H), 4.12 (m, 1H), 3.48 (m, 2H), 2.91 (m,
4H), 1.48-1.36 (m, 4H), 1.10 (d, J=6.3 Hz, 3H) ppm. Mass spectrum:
m/z 441 [M+H].sup.+.
##STR00058##
TABLE-US-00011 TABLE 11 R.sub.11, 12, MS K.sub.D Entry A.sub.1
R.sub.1b Y Z X.sub.2 R.sub.14-17 (M + H).sup.+ Range 11-91 H Me Y H
O R.sub.11 441.3 B linked with linked R.sub.11 with Y
##STR00059##
TABLE-US-00012 TABLE 12 R.sub.11, 12, MS K.sub.D Entry A.sub.1
R.sub.1 Y Z X.sub.2 R.sub.14-17 (M + H).sup.+ Range 12-92 H Me Y H
O R.sub.11 455.2 C linked with linked R.sub.11 with Y
Example 13
[0231] This example illustrated pyrrolidine derivatives of Table
13.
##STR00060## ##STR00061##
[0232] The Preparation of Tyrosine-derived Cyclic Ether (66).
[0233] A.
2-[2-(3-Hydroxy-propenyl)-benzofuran-3-ylmethyl]-pyrrolidine-1-c-
arboxylic acid benzyl ester (60): At -78.degree. C.,
BF.sub.3.etherate (0.6 mL, 4.8 mmol) was added to a solution
containing 47 (1.7 g, 3.9 mmol) in anhydrous DCM (40 mL). After 10
min, DIBAL (1 M/DCM, 10 mL, 10 mmol) was added dropwise from an
addition funnel. After 5 min following the complete addition of the
DIBAL solution, EtOAc (10 mL) was added to quench the excess
reagent. Dilute aqueous HCl was slowly added and the reaction
mixture was allowed to slowly warm to ambient temperature. The
product was extracted with DCM and EtOAc and the combined organic
extracts were washed with dilute aqueous HCl, water, brine, dried
over anhydrous Na.sub.2SO.sub.4, filtered and concentrated. The
crude product was purified by flash silica gel chromatography
(EtOAc/hexane, 1:2) to afford 1.1 g (72%) of 60 as a yellow-colored
oil. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.65 & 7.03
(rotamer, d and app t, J=6.9, 7.8 Hz, 1H), 7.38 (m, 5H), 7.26-7.19
(m, 2H), 6.70-6.52 (m, 2H), 5.26-5.14 (m, 2H), 4.38 (m, 1H), 4.28
(m, 1H), 4.14 (m, 1H), 3.43 (m, 2H), 3.27 & 3.02 (rotamer, 2 m,
1H), 2.76-2.68 (m, 1H), 2.45 (m, 1H), 1.77-1.68 (m, 5H) ppm.
[0234] B. 3-(3-Pyrrolidin-2-ylmethyl-benzofuran-2-yl)-propan-1-ol
(61): A mixture of 60 (1.1 g, 2.8 mmol) and 10% Pd-on-carbon (1 g)
in MeOH (40 mL) was placed under an atmosphere of hydrogen gas (45
PSI) and shaken for 2 h using a Parr apparatus. The catalyst was
removed by filtration through a bed of celite and the clarified
filtrate was concentrated in vacuo to afford 725 mg (quant.) of 61
as a yellow oil which was used without further purification.
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.7.47-7.36 (m, 2H),
7.21-7.17 (m, 2H), 4.59 (br s, 2H), 3.57-3.50 (m, 2H), 3.40-3.31
(m, 1H), 3.08-2.94 (m, 1H), 2.89-2.69 (m, 2H), 2.05-1.95 (m, 2H),
1.93-1.49 (m, 2H) ppm.
[0235] C.
(1-(4-Hydroxy-benzyl)-2-{2-[2-(3-hydroxy-propyl)-benzofuran-3-yl-
methyl]-pyrrolidin-1-yl}-2-oxo-ethyl)-carbamic acid tert-butyl
ester (62): A solution containing Boc-L-tyrosine (577 mg, 2.1 mmol)
and HATU (716 mg, 1.8 mmol) in anhydrous NMP (6 mL) was treated
with NMM (0.3 mL, 2.7 mmol) at ambient temperature. After 10 min, a
solution containing 61 (429 mg, 1.7 mmol) in NMP (5 mL) was added.
After 2 d, the reaction mixture was diluted with water and the
product was extracted with diethyl ether. The combined ether
extracts were washed with water and dilute aqueous NaHCO.sub.3,
brine, dried over anhydrous Na.sub.2SO.sub.4, filtered and
concentrated. The crude product was purified by flash silica gel
chromatography (10% MeOH/DCM) to afford 821 mg (92%) of 62 as a
pale yellow foam. .sup.1H NMR (CDCl.sub.3, 300 MHz) .delta.8.54 (br
2, 1H), 7.66-7.63 (m, 1H), 7.36-7.32 (m, 1H), 7.21-7.06 (m, 5H),
6.83 (d, J=8.4 Hz, 2H), 5.58 (d, J=9.0 Hz, 1H), 4.64-4.56 (m, 1H),
4.34-4.31 (m, 1H), 3.92-3.88 (m, 1H), 3.70 (app t, J=5.7 Hz, 2H),
3.51-3.26 (m, 1H), 3.18-2.79 (m, 4H), 2.01-1.97 (m, 2H), 1.69-1.47
(m, 1H), 1.42 (s, 9H) ppm.
[0236] D. Boc-protected Des-alanine Tyrosine-derived Cyclic Ether
(63): To a solution containing 62 (821 mg, 1.6 mmol) in DCM (40 mL)
was added Ph.sub.3P (431 mg, 1.6 mmol) and ADDP (491 mg, 1.9 mmol)
at ambient temperature. After 16 h, the reaction mixture was
concentrated in vacuo then redissolved in diethyl ether. The
insoluble white solid was removed by filtration and the clarified
filtrate was concentrated. The crude product was purified by flash
silica gel chromatography (EtOAc/hexane, 1:2 to 1:1) to afford 160
mg (19%) of 63 as a light yellow-colored foam. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.7.47 (d, J=7.5 Hz, 1H), 7.34 (d, J=7.8
Hz, 1H), 7.28-7.24 (m, 2H), 7.22-7.11 (m, 2H), 7.00 (dd, J=2.7, 8.1
Hz, 1H), 6.69 (dd, J=3.0, 8.7 Hz, 1H), 5.28 (d, J=9.6 Hz, 1H),
4.88-4.79 (m, 1H), 4.51-4.41 (m, 1H), 4.23-4.17 (m, 1H), 3.97-3.89
(m, 1H), 3.84-3.76 (m, 1H), 3.46-3.29 (m, 2H), 2.75-2.62 (m, 4H),
2.17-2.09 (m, 1H), 1.99-1.90 (m, 1H), 1.72-1.54 (m, 2H), 1.45 (s,
9H) ppm.
[0237] E. Des-alanine Tyrosine-derived Cyclic Ether (64): To a
solution of 63 (160 mg, 0.32 mmol) in DCM (10 mL) was added TFA (2
mL) at ambient temperature. After 1.5 h, the solvent was removed
under reduced pressure. The residue was dissolved in EtOAc and
washed with aqueous NaHCO.sub.3, brine, dried over anhydrous
Na.sub.2SO.sub.4, filtered and concentrated to afford 130 mg
(quant.) of 64 as an off-white-colored solid which was used
directly in the next reaction. .sup.1H NMR (CDCl.sub.3, 300 MHz)
.delta.7.46 (d, J=7.8 Hz, 1H), 7.34 (d, J=8.4 Hz, 1H), 7.21-7.19
(m, 2H), 7.16-7.10 (m, 2H), 6.97 (dd, J=2.4, 8.1 Hz, 1H), 6.70-6.68
(m, 1H), 4.47 (m, 1H), 4.21-4.13 (m, 2H), 3.93 (t, J=9.3 Hz, 1H),
3.51-3.36 (m, 4H), 2.73-2.68 (m, 4H), 2.15-2.07 (m, 1H), 1.98-1.90
(m, 1H), 1.70-1.46 (m, 3H), 1.19-1.13 (m, 1H), 0.64-0.55 (m, 1H)
ppm.
[0238] F. Boc-protected Tyrosine-derived Cyclic Ether (65): A
solution containing Boc-L-alanine (63 mg, 0.33 mmol) in NMP (3 mL)
was treated with HATU (125 mg, 0.33 mmol) followed by NMM (0.1 mL,
0.9 mmol) at ambient temperature. After 10 min, crude amine 64 (125
mg, 0.31 mmol) in NMP (5 mL) was added in a dropwise fashion. After
16 h, the reaction mixture was diluted with diethyl ether and
washed successively with NaHCO.sub.3, 1M HCl, water, and brine. The
organic extract was dried over anhydrous Na.sub.2SO.sub.4, filtered
and concentrated. The crude product was purified by flash silica
gel chromatography (EtOAc/hexane, 1:1 to 2:1) to afford 137 mg
(76%) of 65 as a light yellow-colored solid. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta.7.46 (d, J=7.8 Hz, 1H), 7.34 (d, J=7.8
Hz, 1H), 7.19-7.12 (m, 3H), 7.05-6.99 (m, 2H), 6.70 (dd, J=2.4, 8.4
Hz, 1H), 5.14-5.08 (m, 2H), 4.48-4.42 (m, 1H), 4.26-4.18 (m, 2H),
3.93 (app t, J=9.3 Hz, 1H), 3.84-3.76 (m, 1H), 3.47-3.31 (m, 2H),
2.84-2.64 (m, 4H), 2.15-2.08 (m, 1H), 1.97-1.93 (m, 1H), 1.71-1.52
(m, 3H), 1.48 (s, 9H), 1.38 (d, J=7.2 Hz, 3H), 1.18-1.12 (m, 1H),
0.64-0.56 (m, 1H) ppm.
[0239] G. Tyrosine-derived Cyclic Ether (66): To a solution of 65
(137 mg, 0.23 mmol) in DCM (10 mL) was added TFA (2 mL) at ambient
temperature. After 1.5 h, the solvent was removed under reduced
pressure. The residue was dissolved in EtOAc and washed with
aqueous NaHCO.sub.3, brine, dried over anhydrous Na.sub.2SO.sub.4,
filtered and concentrated. The crude product was purified by
reverse-phase HPLC (C18, 10-100% ACN/water containing 0.1% HOAc) to
afford 90 mg (82%) of 66 as a white solid. .sup.1H NMR (DMSO, 300
MHz) .delta.8.23 (d, J=6.9 Hz, 1H), 7.46-7.39 (m, 3H), 7.23-7.12
(m, 2H), 7.01-6.99 (m, 2H), 6.85-6.82 (m, 1H), 4.86 (m, 1H), 4.27
(m, 1H), 4.16 (m, 1H), 3.98-3.84 (m, 1H), 3.44-3.33 (m, 1H),
3.16-3.10 (m, 1H), 2.76-2.67 (m, 3H), 1.99 (m, 1H), 1.57 (app t,
J=5.7 Hz, 2H), 1.45-1.39 (m, 1H), 1.16 (d, J=6.3 Hz, 3H), 1.02-0.97
(m, 1H), 0.58-0.49 (m, 1H) ppm. Mass spectrum: m/z 476.2
[M+H].sup.+.
##STR00062##
TABLE-US-00013 TABLE 13 R.sub.11, 12, MS K.sub.D Entry A.sub.1
R.sub.1b Y Z X.sub.2 R.sub.14-17 (M + H).sup.+ Range 13-93 H Me Y H
O R.sub.11 476.2 B linked linked with with Y R.sub.11
Example 14
[0240] This example illustrated pyrrolidine derivatives of Table
14
##STR00063## ##STR00064##
[0241] The Preparation of
2S-Amino-N-{1S-[2S-(1H-indol-3-ylmethyl)-pyrrolidine-1-carbonyl]-2-methyl-
-propyl}-propionamide (76):
[0242] A.
trans-2S-(3-Methanesulfonyloxy-propenyl)-pyrrolidine-1-carboxyli- c
acid tert-butyl ester (67): To a solution of 22 (2 g, 8.8 mmol) in
DCM (10 mL) was added triethylamine (2.5 mL, 17.6 mmol). The
solution was cooled in ice bath and methanesulfonyl chloride (0.74
mL, 9.68 mmol) was added dropwise and stirred at room temperature
for 30 min. Water (10 mL) was added and the product was extracted
with DCM (3.times.50 mL). The organic layers were combined and
washed with 5 mL 1N HCl, water (10 mL), and brine, and dried over
anhydrous Na.sub.2SO.sub.4. Solvent evaporated under reduced
pressure to obtained 9.5 g of 67 which was used without
purification. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 4.4-4.0
(m, 2H), 3.42-3.21 (m, 3H), 3.0 (s, 3H), 2-1.6 (m, 4H), 1.42 (s,
9H) ppm.
[0243] B.
trans-2S-{3-[Acetyl-(2-iodo-phenyl)-amino]-propenyl}-pyrrolidine-
-1-carboxylic acid tert-butyl ester (68): A solution of
o-iodoacetanilide (1.1 g, 4.21 mmol) in DMF (10 mL) was cooled in
ice bath and NaH (60% dispersion in mineral oil, 0.24 g, 6.31 mmol)
was added in portions and stirred at room temperature for 10 min.
Crude mesylate 67 (1.28 g, 4.21 mmol) in DMF (5 mL) was added
dropwise at room temperature and stirred for 30 min. Water (10 mL)
was added and the product was extracted with diethyl ether
(3.times.50 mL). The combined ether extracts were washed with water
(3.times.50 mL) and brine, dried over Na.sub.2SO.sub.4. Solvent
evaporated under reduced pressure and purified by flash silica gel
chromatography (3:1 hexanes/ethyl acetate) to afford 1.17 g of 68
as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 7.85
(d, J=9.9 Hz, 1H), 7.4-7.0 (m, 3H), 5.6 (m, 1H), 5.28 (m, 1H), 4.86
(m, 1H), 3.3 (m, 3H), 2.0-1.6 (m, 4H), 1.4 (s, 9H) ppm.
[0244] C.
2S-(1-Acetyl-1H-indol-3-ylmethyl)-pyrrolidine-1-carboxylic acid
tert-butyl ester (69): To a solution of 68 (1.1 g, 2.33 mmol) in
DMF (15 mL) was added K.sub.2CO.sub.3 (0.41 g, 3.02 mmol),
NaHCO.sub.2 (0.16 g, 2.44 mmol) followed by tetrabutylammonium
chloride (0.64 g, 2.33 mmol) and Pd(OAc).sub.2 (0.02 g, 0.07 mmol)
and the reaction flask was immersed in a pre-heated oil bath
(100.degree. C.). After 40 min., water (10 mL) was added and the
product was extracted with diethyl ether (3.times.50 mL). The
diethyl ether extracts were washed with water (3.times.50 mL),
brine and dried over Na.sub.2SO.sub.4. Solvent was evaporated under
reduced pressure and purified by flash silica gel chromatography
(3:1 hexanes/ethyl acetate) to afford 0.37 g of 69 as white solid.
.sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 8.4 (s, 1H), 7.78-7.6
(dd, J=10.7, 10.7 Hz, 1H), 4.2-4.0 (m, 1H), 3.45-3.0 (m, 3H),
2.7-2.6 (m, 1H), 2.6 (s, 3H), 1.9-1.65 (m, 4H), 1.5 (s, 9H)
ppm.
[0245] D. 1-(3-Pyrrolidin-2S-ylmethyl-indol-1-yl)-ethanone (70): To
a solution of 69 (0.37 g, 1.08 mmol) in DCM (20 mL) was added TFA
(4 mL) and stirred at room temperature for 30 min. Aqueous
NaHCO.sub.3 (5 mL) was added and the reaction mixture was
concentrated under reduced pressure. The product was extracted with
DCM (3.times.50 mL) and the organic extract was washed with aqueous
NaHCO.sub.3, water and brine, and dried over anhydrous
Na.sub.2SO.sub.4. Solvent was removed under reduced pressure and
purified by silica gel column chromatography (10:1 DCM/MeOH) to
afford 0.26 g of 70 as white solid. .sup.1H NMR (CDCl.sub.3, 300
MHz): .delta. 8.6 (d, J=11 Hz, 1H), 7.5 (d, J=11 Hz, 1H), 7.4-7.2
(m, 3H), 3.8-3.6 (m, 1H), 3.2-2.9 (m, 4H), 2.8 (s, 3H), 2.2-1.6 (m,
4H) ppm.
[0246] E.
{1S-[2S-(1-Acetyl-1H-indol-3-ylmethyl)-pyrrolidine-1-carbonyl]-2-
-methyl-propyl}-carbamic acid tert-butyl ester (71): To a solution
of Boc-L-valine (0.25 g, 1.18 mmol) in NMP (5 mL), was added HATU
(0.44 mg, 1.18 mmol) followed by NMM (0.3 mL, 2.67 mmol). After 5
min., added 70 (0.25 g, 0.11 mmol) and stirred at room temperature
for 30 min. Ethyl acetate (20 mL) was added and the organic
solution was washed with aqueous NaHCO.sub.3 (10 mL), 1N HCl (10
mL), water, and brine, dried over Na.sub.2SO.sub.4. Solvent was
removed under reduced pressure and the product was purified by
flash silica gel chromatography to afford 0.36 mg of 71 as a white
solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 8.4 (m, 1H), 7.88
(d, J=11 Hz, 1H), 7.4-7.2 (m, 3H), 4.4-4.2 (m, 1H), 3.8-3.4 (m,
3H), 3.38 (d, J=11 Hz, 1H), 2.65 (d, J=11 Hz, 1H), 2.6 (s, 3H),
2.5-2.4 (m, 1H), 2.1-1.7 (m, 4H), 1.4 (s, 9H), 1.05 (d, J=5.5 Hz,
3H), 0.95 (d, J=5.5 Hz, 3H) ppm.
[0247] F.
1-[2S-(1-Acetyl-1H-indol-3-ylmethyl)-pyrrolidin-1-yl]-2S-amino-3-
-methyl-butan-1-one (72): To a solution of 71 (0.36 g, 0.81 mmol)
in DCM (20 mL) was added TFA (4 mL) and the reaction mixture was
stirred at room temperature for 30 min. Aqueous NaHCO.sub.3 was
added to the reaction mixture and TFA and DCM were removed under
reduced pressure. The product was extracted with DCM (3.times.50
mL) and the combined DCM extracts were washed with water and brine
and dried over anhydrous Na.sub.2SO.sub.4. Solvent was removed
under reduced pressure and the product was purified by flash silica
gel chromatography (10:1 DCM/MeOH) to afford 0.27 g of 72 as white
solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 8.4 (m, 1H), 7.88
(d, J=11 Hz, 1H), 7.4-7.2 (m, 3H), 4.4-4.2 (m, 1H), 3.8-3.4 (m,
3H), 3.38 (d, J=11 Hz, 1H), 2.65 (d, J=11 Hz, 1H), 2.6 (s, 3H),
2.5-2.4 (m, 1H), 2.1-1.7 (m, 4H), 1.05 (d, J=5.5 Hz, 3H), 0.95 (d,
J=5.5 Hz, 3H) ppm.
[0248] G.
(1S-{1S-[2S-(1-Acetyl-1H-indol-3-ylmethyl)-pyrrolidine-1-carbony-
l]-2-methyl-propylcarbamoyl}-ethyl)-carbamic acid tert-butyl ester
(73): To a solution of Boc-L-alanine (0.13 g, 0.38 mmol) in NMP (3
mL) was added HATU (0.16 mg, 0.41 mmol) followed by NMM (0.1 mL,
0.95 mmol). After 5 min., 72 (0.12 g, 0.34 mmol) was added and the
reaction mixture was stirred at room temperature for 30 min. Ethyl
acetate (20 mL) was added to the reaction mixture and the organic
solution was washed with aqueous NaHCO.sub.3 (10 mL), 1N HCl (10
mL), water, and brine, dried over Na.sub.2SO.sub.4. Solvent was
removed under reduced pressure and the product was purified by
flash silica gel chromatography to afford 0.15 mg of 73 as white
solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 8.4 (m, 1H), 7.88
(d, J=10.9 Hz, 1H), 7.4-7.2 (m, 3H), 7.0-6.8 (m 1H), 4.6 (m, 1H),
4.5-4.4 (m, 1H), 4.2 (m, 1H), 3.8-3.6 (m, 2H), 3.38 (d, J=10.9 Hz,
1H), 2.65 (d, J=10.9 Hz, 1H), 2.6 (s, 3H), 2.5-2.4 (m, 1H), 2.1-1.7
(m, 4H), 1.45 (s, 9H), 1.4 (d, J=10.9 Hz, 3H), 1.05 (d, J=5.5 Hz,
3H), 0.95 (d, J=5.5 Hz, 3H) ppm.
[0249] H.
N-{1S-[2S-(1-Acetyl-1H-indol-3-ylmethyl)-pyrrolidine-1-carbonyl]-
-2-methyl-propyl}-2S-amino-propionamide (74): To a solution of 73
(0.15 g, 0.29 mmol) in DCM (20 mL) was added TFA (4 mL) and the
reaction mixture was stirred at room temperature for 30 min.
Aqueous NaHCO.sub.3 was added to the reaction mixture and TFA and
DCM were removed under reduced pressure. The product was extracted
with DCM (3.times.50 mL) and the DCM extracts were washed with
water, brine, and dried over anhydrous Na.sub.2SO.sub.4. Solvent
was removed under reduced pressure and the product was purified by
flash silica gel chromatography (10:1 DCM/MeOH) to afford 0.12 g of
74 as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 8.4
(m, 1H), 7.88 (d, J=10.9 Hz, 1H), 7.85 (d, J=10.9 Hz, 1H), 7.4-7.2
(m, 3H), 4.6 (m, 1H), 4.5-4.4 (m, 1H), 3.8 (m, 1H), 3.75-3.4 (m,
2H), 3.38 (d, J=10.9 Hz, 1H), 2.65 (d, J=10.9 Hz, 1H), 2.6 (s, 3H),
2.5-2.4 (m, 1H), 2.1-1.7 (m, 4H), 1.4 (d, J=10.9 Hz, 3H), 1.05 (d,
J=5.5 Hz, 3H), 0.95 (d, J=5.5 Hz, 3H) ppm.
[0250]
2S-Amino-N-{1S-[2S-(1H-indol-3-ylmethyl)-pyrrolidine-1-carbonyl]-2--
methyl-propyl}-propionamide (75): To a solution of 74 (0.12 g,
0.291 mmol) in dry MeOH (3 mL) was added 3 mL of 10% NaOH/MeOH.
After 15 min., water (2 mL) was added to the reaction mixture and
the solvent was removed under reduced pressure. The product was
extracted with ethyl acetate (3.times.50 mL) and the organic
extracts were washed with water, brine, and dried over
Na.sub.2SO.sub.4. Solvent was removed under reduced pressure and
the product was purified by flash silica gel chromatography (10:1
DCM/MeOH) to afford 0.06 g of 75 as white solid. .sup.1H NMR
(CDCl.sub.3, 300 MHz): .delta. 8.4 (m, 1H), 7.88 (d, J=10.9 Hz,
1H), 7.85 (d, J=10.9 Hz, 1H), 7.4-7.2 (m, 3H), 4.6 (m, 1H), 4.5-4.4
(m, 1H), 3.8 (m, 1H), 3.75-3.4 (m, 2H), 3.38 (d, J=10.9 Hz, 1H),
2.65 (d, J=10.9 Hz, 1H), 2.5-2.4 (m, 1H), 2.1-1.7 (m, 4H), 1.4 (d,
J=10.9 Hz, 3H), 1.05 (d, J=5.5 Hz, 3H), 0.95 (d, J=5.5 Hz, 3H)
ppm.
##STR00065##
TABLE-US-00014 TABLE 14 MS K.sub.D Entry A.sub.1 R.sub.1b Y Z
R.sub.12 R.sub.14-17 R.sub.11 (M + H).sup.+ Range 14-94 H Me iPr H
Ac H H 413.2 A 14-95 H H iPr H Ac H H 399.3 D 14-96 Me Me tBu H Ac
6-F H 459.2 B (R.sub.16) 14-97 Me Me cHex H Ac 6-F H 485.3 B
(R.sub.16) 14-98 H Me iPr H Ac 7-Me H 426.8 A (R.sub.17) 14-99 H Me
iPr H H H H 371.3 B 14-100 H Me iPr H H 7-Me H 385.5 A (R.sub.17)
14-101 Boc Me iPr H Boc H H 571.3 D 14-102 H Me iPr H
MeC.ident.CCH.sub.2 H H 423.3 B 14-103 H Me iPr H
HC.ident.CCH.sub.2 H H 409.3 A 14-104 Me Me cHex H H 6-F H B
(R.sub.16) 14-105 H H tBu H Ac 6-F H D
Example 15
[0251] This example illustrated pyrrolidine derivatives of Table
15.
##STR00066##
[0252] The Preparation of
2S-Amino-N-(2-methyl-1S-{2S-[1-(toluene-4-sulfonyl)-1H-indol-3-ylmethyl]--
pyrrolidine-1-carbonyl}-propyl)-propionamide (78):
[0253] A.
(1S-{1S-[2S-(1H-Indol-3-ylmethyl)-pyrrolidine-1-carbonyl]-2-meth-
yl-propylcarbamoyl}-ethyl)-carbamic acid tert-butyl ester (76): To
a solution of 73 (0.70 g, 1.36 mmol) in dry MeOH (10 mL) was added
5 mL of 10% NaOH/MeOH and stirred for 15 min. Water (5 mL) was
added to the reaction mixture and the solvent removed under reduced
pressure. The product was extracted with ethyl acetate (3.times.50
mL) and the organic extracts were washed with water, brine, and
dried over Na.sub.2SO.sub.4. Solvent was removed under reduced
pressure and the product was purified by flash silica gel
chromatography (10:1 DCM/MeOH) to afford 0.53 g of 76 as a white
solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta. 8.0 (s, 1H), 7.9
(d, J=9.9 Hz, 1H), 7.38 (d, J=9.9 Hz, 1H), 7.3-7.1 (m, 3H), 6.8 (m,
1H), 4.62 (m 1H), 4.5-4.4 (m 1H), 4.4-4.0 (m, 2H), 3.7-3.5 (m, 2H),
3.4 (m, 1H), 2.5 (m, 1H), 2.2-1.8 (m, 4H), 1.48 (s, 9H), 1.35 (d,
J=9.9 Hz, 3H), 1.05 (d, J=5.5 Hz, 3H), 0.95 (d, J=5.5 Hz, 3H)
ppm.
[0254] B.
[1S-(2-Methyl-1S-{2S-[1-(toluene-4-sulfonyl)-1H-indol-3-ylmethyl-
]-pyrrolidine-1-carbonyl}-propylcarbamoyl)-ethyl]-carbamic acid
tert-butyl ester (77): To a solution of 76 (0.05 g, 0.11 mmol) in
DCM (1 mL) was added NaOH (0.01 g, 0.13 mmol) and stirred at room
temperature for 30 min. Tosyl chloride (0.03 g, 0.16 mmol) was
added and the reaction mixture was heated to 35.degree. C. for 1 h.
Water (5 mL) was added to the reaction mixture and the product was
extracted with DCM (3.times.30 mL). The DCM extracts were washed
with water, brine, and dried over Na.sub.2SO.sub.4. Solvent was
removed under reduced pressure and the product was purified by
flash silica gel chromatography (3:1 hexane/ethyl acetate) to
afford 61 mg of 77 as a white solid. .sup.1H NMR (CDCl.sub.3, 300
MHz): .delta. 7.95 (d, J=9.9 Hz, 1H), 7.82 (d, J=9.9 Hz, 1H), 7.7
(d, J=9.9 Hz, 2H), 7.4-7.2 (m, 5H), 6.8 (m, 1H), 4.6 (m, 1H), 4.4
(m, 1H), 4.3-4.18 (m, 2H), 3.8-3.5 (m, 2H), 3.3 (m, 1H), 2.45 (m,
1H), 2.35 (s, 3H), 2.2-1.8 (m, 4H), 1.43 (s, 9H), 1.38 (d, J=9.9
Hz, 3H), 1.05 (d, J=5.5 Hz, 3H), 0.95 (d, J=5.5 Hz, 3H) ppm.
[0255] C.
2S-Amino-N-(2-methyl-1S-{2S-[1-(toluene-4-sulfonyl)-1H-indol-3-y-
lmethyl]-pyrrolidine-1-carbonyl}-propyl)-propionamide (78): To a
solution of 77 (0.06 g, 0.096 mmol) in DCM (10 mL) was added TFA (2
mL) and the reaction mixture was stirred at room temperature for 30
min. Aqueous NaHCO.sub.3 was added to reaction mixture and TFA and
DCM were removed under reduced pressure. The product was extracted
with DCM (3.times.25 mL) and the DCM extracts were washed with
water, brine, and dried over anhydrous Na.sub.2SO.sub.4. Solvent
was removed under reduced pressure and the product was purified by
flash silica gel chromatography (10:1 DCM/MeOH) to afford 0.04 g of
78 as a white solid. .sup.1H NMR (CDCl.sub.3, 300 MHz): .delta.
7.95 (d, J=9.9 Hz, 1H), 7.82 (d, J=9.9 Hz, 1H), 7.7 (d, J=9.9 Hz,
2H), 7.4-7.2 (m, 5H), 6.8 (m, 1H), 4.6 (m, 1H), 4.4 (m, 1H),
4.3-4.18 (m, 2H), 3.8-3.5 (m, 2H), 3.3 (m, 1H), 2.45 (m, 1H), 2.35
(s, 3H), 2.2-1.8 (m, 4H), 1.38 (d, J=9.9 Hz, 3H), 1.05 (d, J=5.5
Hz, 3H), 0.95 (d, J=5.5 Hz, 3H) ppm.
##STR00067##
TABLE-US-00015 TABLE 15 MS K.sub.D Entry A.sub.1 R.sub.1b Y Z
R.sub.12 R.sub.14-17 R.sub.11 (M + H).sup.+ Range 15-104 H Me iPr H
MeC.ident.CCH.sub.2 H H 423.3 B 15-105 H Me iPr H
HC.ident.CCH.sub.2 H H 409.3 A 15-106 Me Me iPr H H 7-BnO H 491.3 C
(R.sub.17) 15-107 H Me iPr H Tosyl H H 525.3 A 15-108 Me Me tBu H H
6-F 2- 499.5 A (R.sub.16) thiophenyl
Example 16
[0256] This example illustrated pyrrolidine derivatives of Table
16.
##STR00068## ##STR00069##
[0257] The Preparation of
N-{1-Cyclohexyl-2-[2-(6-fluoro-1-{2-[2-(2-methoxy-ethoxy)-ethoxy]-ethyl}--
1H-indol-3-ylmethyl)-pyrrolidin-1-yl]-2-oxo-ethyl}-2-methylamino-propionam-
ide (85):
[0258] A.
2-(6-Fluoro-1-{2-[2-(2-methoxy-ethoxy)-ethoxy]-ethyl}-1H-indole--
3-ylmethyl)-2S-pyrrolidine-1-carboxylic acid tert-butyl ester (80):
To a suspension of NaH (72 mg, 1.8 mmol, 60% mineral oil
suspension) in DMF (1 mL) was added 79 (180 mg, 0.60 mmol) in DMF
(1 mL) at room temperature. The mixture was stirred for 1 h at room
temperature, followed by addition of tri(ethylene glycol)
monomethyl ether (182 mg, 0.57 mmol) in DMF (1 mL). The resulting
mixture was stirred at room temperature overnight, and quenched by
addition of NH.sub.4Cl aqueous solution at 0.degree. C. The crude
product was extracted with EtOAc. The organic phase was washed with
brine and dried over Na.sub.2SO.sub.4. After removal of the
solvent, the residue was purified by flash silica gel
chromatography (50% EtOAc in hexanes) to afford 250 mg of 80 (93%).
[TLC (60% EtOAc/hexane): R.sub.f(80)=0.22)]. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta. 7.65-7.76 (1H), 7.33 (m, 1H), 7.20
(m, 1H), 7.09 (m, 1H), 6.95 (s, 1H), 4.27 (t, J=8.4 Hz, 2H), 3.79
(t, J=5.7 Hz, 2H), 3.40-3.70 (9H), 3.37 (s, 3H), 3.10-3.40 (2H),
2.65 (m, 1H), 1.75 (brs, 4H), 1.55 (s, 9H) ppm.
[0259] B.
6-Fluoro-1-{2-[2-(2-methoxy-ethoxy)-ethoxy]-ethyl}-3-pyrrolidin--
2-ylmethyl-1H-indole (81): A solution of 80 (250 mg, 0.56 mmol) in
DCM (5 mL) was treated with TFA (1 mL) at room temperature. After 2
h, the reaction mixture was concentrated, diluted with EtOAc,
washed with 1N aqueous NaOH and brine, dried over Na.sub.2SO.sub.4,
filtered and concentrated to afford 190 mg (98%) of 81 as a light
yellow oil. The product was used without further purification.
[0260] C.
{1-Cyclohexyl-2-[2-(6-fluoro-1-{2-[2-(2-methoxy-ethoxy)-ethoxy]--
ethyl}-1H-indol-3-ylmethyl)-pyrrolidin-1-yl]-2-oxo-ethyl}-carbamic
acid tert-butyl ester (82): To a solution of
Boc-L-cyclohexylglycine (172 mg, 0.67 mmol) in NMP (2 mL) was added
HATU (255 mg, 0.67 mmol) followed by NMM (0.1 mL, 0.95 mmol). After
5 min, 81 (190 mg, 0.55 mmol) in DCM (1 mL) was added and the
reaction mixture was stirred at room temperature overnight. Ethyl
acetate (20 mL) was added to the reaction mixture and the organic
solution was washed with water, 1N HCl (5 mL), aqueous NaHCO.sub.3
(10 mL), and brine, dried over Na.sub.2SO.sub.4. Solvent was
removed under reduced pressure and the product was purified by
flash silica gel chromatography to afford 280 mg (85%) of 82 as a
wax. [TLC (60% EtOAc/hexane): R.sub.f(82)=0.18)]. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta. 7.83 (m, 1H), 7.32 (m, 1H), 7.20 (m,
1H), 7.09 (m, 1H), 6.98 (s, 1H), 5.32 (m, 1H), 4.0-4.6 (5H), 3.79
(t, J=5.7 Hz, 2H), 3.40-3.70 (9H), 3.37 (s, 3H), 2.65 (m, 1H),
1.6-2.0 (10H), 1.46 (s, 9H), 1.0-1.4 (6H) ppm.
[0261] D.
2-Amino-2-cyclohexyl-1-[2-(6-fluoro-1-{2-[2-(2-methoxy-ethoxy)-e-
thoxy]-ethyl}-1H-indol-3-ylmethyl)-pyrrolidin-1-yl]-ethanone (83):
A solution of 82 (250 mg, 0.43 mmol) in DCM (5 mL) was treated with
TFA (1 mL) at room temperature. After 2 h, the reaction mixture was
concentrated, diluted with EtOAc, washed with 1N aqueous NaOH and
brine, dried over Na.sub.2SO.sub.4, filtered and concentrated to
afford 210 mg (100%) of 83 as a light yellow wax. The product was
used without further purification.
[0262] E.
(1-{1-Cyclohexyl-2-[2-(6-fluoro-1-{2-[2-(2-methoxy-ethoxy)-ethox-
y]-ethyl-}1H-indol-3-ylmethyl)-pyrrolidin-1-yl]-2-oxo-ethylcarbamoyl}-ethy-
l)-methyl-carbamic acid tert-butyl ester (84): To a solution of
Boc-L-N-methylanaline (91 mg, 0.48 mmol) in NMP (2 mL) was added
HATU (183 mg, 0.48 mmol) followed by NMM (0.1 mL, 0.95 mmol). After
5 min., 83 (210 mg, 0.43 mmol) in DCM (1 mL) was added and the
reaction mixture was stirred at room temperature overnight. Ethyl
acetate (20 mL) was added to the reaction mixture and the organic
solution was washed with water, 1N HCl (5 mL), aqueous NaHCO.sub.3
(10 mL), and brine, dried over Na.sub.2SO.sub.4. Solvent was
removed under reduced pressure and the product was purified by
flash silica gel chromatography to afford 188 mg (65%) of 84 as a
wax. [TLC (80% EtOAc/hexane): R.sub.f(84)=0.20)]. .sup.1H NMR
(CDCl.sub.3, 300 MHz) .delta. 7.80 (m, 1H), 7.35 (m, 1H), 7.19 (m,
1H), 7.10 (m, 1H), 6.95 (s, 1H), 4.62 (m, 1H), 4.46 (m, 1H), 4.20
(t, J=6.7 Hz, 2H), 3.77 (, t, J=5.4 Hz, 2H), 3.2-3.7 (5H), 3.36 (s,
3H), 2.48 (d, J=7.5 Hz, 3H) (t, J=5.7 Hz, 2H), 3.40-3.70 (9H), 3.37
(s, 3H), 2.65 (m, 1H), 2.57 (m, 1H), 1.6-2.0 (8H), 1.51 (S, 9H),
1.38 (d, J=6.6 Hz, 3H), 1.0-1.4 (4H) ppm.
[0263] F.
2-(6-Fluoro-1-{2-[2-(2-methoxy-ethoxy)-ethoxy]-ethyl}-1H-indole--
3-ylmethyl)-2S-pyrrolidine-1-carboxylic acid tert-butyl ester (85):
A solution of 84 (188 mg, 0.28 mmol) in DCM (5 mL) was treated with
TFA (1 mL) at room temperature. After 2 h, the reaction mixture was
concentrated, diluted with EtOAc, washed with 1N aqueous NaOH and
brine, dried over Na.sub.2SO.sub.4, filtered and concentrated. The
residue was purified by HPLC to afford 110 mg (65%) acetate salt of
85 as a white solid. [TLC (20% MeOH in EtOAc): R.sub.f(85)=0.20)].
.sup.1H NMR (CDCl.sub.3, 300 MHz) .delta. 7.79 (br d, 2H), 7.34 (d,
J=7.2 Hz, 1H), 7.21 (m, 1H), 7.10 (m, 1H), 6.96 (d, J=9.0 Hz, 1H),
6.23 (br s, 2H), 4.61 (m, 1H), 4.44 (m, 1H), 4.24 (t, J=5.4 Hz,
2H), 3.78 (t, J=5.4 Hz, 2H), 3.4-3.8 (12H), 3.36 (s, 3H), 2.60 (m,
1H), 2.48 (d, J=7.5 Hz, 3H), 1.6-2.0 (8H), 1.39 (d, J=6.6 Hz, 3H),
1.0-1.4 (4H) ppm. Mass spectrum, m/z 571.3 [M+H].sup.+.
##STR00070##
TABLE-US-00016 TABLE 16 MS K.sub.D Entry A.sub.1 R.sub.1b Y Z
R.sub.12 R.sub.14-17 R.sub.11 (M + H).sup.+ Range 16-108 Me Me tBu
H MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F H 563.4 B
(R.sub.16) 16-109 Me Me cHex H
MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F H 589.4 B
(R.sub.16) 16-110 Me Et cHex H
MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 H H 585.5 B 16-111 Me
Me cHex H MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 H H 571.5 B
16-112 Me Me tBu H HO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F
Br 627.3 A (R.sub.16) 16-113 Me Me tBu H
MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F Br 641.3 A
(R.sub.16) 16-114 Me Me tBu H
MeO(CH.sub.2CH.sub.2O).sub.2CH.sub.2CH.sub.2 6-F 2- 645.4 A
(R.sub.16) thiophenyl
[0264] Although the present invention has been described in
considerable detail with reference to certain preferred embodiments
thereof, other versions are possible. Therefore the spirit and
scope of the appended claims should not be limited to the
description and the preferred versions contain within this
specification.
* * * * *