U.S. patent application number 12/429838 was filed with the patent office on 2009-09-10 for amino-derivatives as novel inhibitors of histone deacetylase.
Invention is credited to Patrick Rene Angibaud, Virginie Sophie Poncelet, Bruno Roux, Kristof Van Emelen.
Application Number | 20090227558 12/429838 |
Document ID | / |
Family ID | 27805289 |
Filed Date | 2009-09-10 |
United States Patent
Application |
20090227558 |
Kind Code |
A1 |
Angibaud; Patrick Rene ; et
al. |
September 10, 2009 |
AMINO-DERIVATIVES AS NOVEL INHIBITORS OF HISTONE DEACETYLASE
Abstract
This invention comprises the novel compounds of formula (I)
##STR00001## wherein n, m, t, R.sup.1, R.sup.2, L, Q, X, Y, Z and
##STR00002## have defined meanings, having histone deacetylase
inhibiting enzymatic activity; their preparation, compositions
containing them and their use as a medicine.
Inventors: |
Angibaud; Patrick Rene;
(Fontaine-Bellenger, FR) ; Van Emelen; Kristof;
(Sint-Niklaas, BE) ; Poncelet; Virginie Sophie;
(Le Manoir sur Seine, FR) ; Roux; Bruno; (Saint
Leger du Bourg-Denis, FR) |
Correspondence
Address: |
PHILIP S. JOHNSON;JOHNSON & JOHNSON
ONE JOHNSON & JOHNSON PLAZA
NEW BRUNSWICK
NJ
08933-7003
US
|
Family ID: |
27805289 |
Appl. No.: |
12/429838 |
Filed: |
April 24, 2009 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
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10507784 |
Sep 13, 2004 |
7541369 |
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PCT/EP2003/002519 |
Mar 11, 2003 |
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12429838 |
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60363799 |
Mar 13, 2002 |
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Current U.S.
Class: |
514/210.2 ;
435/18; 514/235.8; 514/275; 514/318; 544/122; 544/332; 546/194 |
Current CPC
Class: |
A61P 9/00 20180101; A61P
9/08 20180101; A61P 17/06 20180101; A61P 29/00 20180101; A61K 31/40
20130101; A61P 5/00 20180101; A61P 9/10 20180101; A61P 13/12
20180101; A61P 15/00 20180101; C07D 207/09 20130101; C07D 401/12
20130101; A61K 31/472 20130101; A61K 31/496 20130101; A61K 31/55
20130101; A61K 45/06 20130101; C07D 211/14 20130101; A61P 35/02
20180101; C07D 295/26 20130101; A61K 31/506 20130101; A61P 13/08
20180101; A61P 17/04 20180101; C07D 409/12 20130101; C07D 213/78
20130101; C07D 401/04 20130101; A61K 31/495 20130101; A61K 31/4427
20130101; A61K 31/4545 20130101; C07D 413/12 20130101; C07D 409/14
20130101; A61P 9/02 20180101; A61P 27/02 20180101; C07D 217/04
20130101; C07D 307/68 20130101; C07D 413/04 20130101; C07D 471/10
20130101; C12Q 1/34 20130101; A61P 11/02 20180101; A61P 19/02
20180101; A61P 31/18 20180101; C07D 217/16 20130101; A61K 31/5377
20130101; A61P 37/08 20180101; A61P 1/04 20180101; A61P 3/10
20180101; C07D 405/06 20130101; C07D 513/04 20130101; A61P 13/10
20180101; A61P 27/06 20180101; A61P 11/06 20180101; C07D 295/155
20130101; C07D 217/02 20130101; A61K 31/454 20130101; A61P 17/00
20180101; A61P 21/04 20180101; A61P 43/00 20180101; C07D 471/04
20130101; A61P 25/16 20180101; A61P 37/06 20180101; A61P 37/04
20180101; A61P 25/00 20180101; A61P 37/02 20180101; C07D 239/42
20130101; A61P 19/06 20180101; C07D 403/12 20130101; A61P 17/14
20180101; A61P 17/16 20180101; A61P 25/28 20180101; C12Q 1/48
20130101; A61P 17/10 20180101; A61P 35/00 20180101; C07D 207/14
20130101; C07D 211/58 20130101; A61K 31/402 20130101; A61K 31/435
20130101; C07D 403/04 20130101; A61P 11/00 20180101 |
Class at
Publication: |
514/210.2 ;
546/194; 514/318; 435/18; 544/332; 514/275; 544/122; 514/235.8 |
International
Class: |
A61K 31/397 20060101
A61K031/397; C07D 213/02 20060101 C07D213/02; A61K 31/4545 20060101
A61K031/4545; C12Q 1/34 20060101 C12Q001/34; C07D 239/02 20060101
C07D239/02; A61K 31/506 20060101 A61K031/506; C07D 413/02 20060101
C07D413/02; A61K 31/5377 20060101 A61K031/5377; A61P 35/00 20060101
A61P035/00 |
Claims
1-12. (canceled)
13. A compound of formula (I), ##STR00088## the N-oxide forms, the
pharmaceutically acceptable addition salts and the
stereo-chemically isomeric forms thereof, wherein n is 0, 1, 2 or 3
and when n is 0 then a direct bond is intended; m is 0, 1, 2 or 3
and when m is 0 then a direct bond is intended; t is 0 or 1 and
when t is 0 then a direct bond is intended; each Q is nitrogen or
##STR00089## each X is nitrogen or ##STR00090## each Y is nitrogen
or ##STR00091## each Z is --CH.sub.2-- or --O--; R.sup.1 is
--C(O)NR.sup.3R.sup.4, --N(H)C(O)R.sup.7,
--C(O)--C.sub.1-6alkanediylSR.sup.7, --NR.sup.8C(O)N(OH)R.sup.7,
--NR.sup.8C(O)C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)C.dbd.N(OH)R.sup.7 or another Zn-chelating-group
wherein R.sup.3 and R.sup.4 are each independently selected from
hydrogen, hydroxy, C.sub.1-6alkyl, hydroxyC.sub.1-6alkyl,
aminoC.sub.1-6alkyl or aminoaryl; R.sup.7 is independently selected
from hydrogen, C.sub.1-6alkyl, C.sub.1-6alkylcarbonyl,
arylC.sub.1-6alkyl, C.sub.1-6alkylpyrazinyl, pyridinone,
pyrrolidinone or methylimidazolyl; R.sup.8 is independently
selected from hydrogen or C.sub.1-6alkyl; R.sup.2 is hydrogen,
hydroxy, amino, hydroxyC.sub.1-6alkyl, C.sub.1-6alkyl,
C.sub.1-6alkyloxy, arylC.sub.1-6alkyl, aminocarbonyl,
hydroxycarbonyl, aminoC.sub.1-6alkyl, aminocarbonylC.sub.1-6alkyl,
hydroxycarbonylC.sub.1-6alkyl, hydroxyaminocarbonyl,
C.sub.1-6alkyloxycarbonyl, C.sub.1-6alkylaminoC.sub.1-6alkyl or
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl; -L- is a bivalent radical
selected from C.sub.1-6alkanediyl, carbonyl, sulfonyl, or
C.sub.1-6alkanediyl substituted with phenyl; ##STR00092## is a
radical selected from ##STR00093## ##STR00094## ##STR00095##
##STR00096## ##STR00097## wherein each s is independently 0, 1, 2,
3, 4 or 5; each R.sup.5 and R.sup.6 are independently selected from
hydrogen; halo; hydroxy; amino; nitro; trihaloC.sub.1-6alkyl;
trihaloC.sub.1-6alkyloxy; C.sub.1-6alkyl; C.sub.1-6alkyl
substituted with aryl and C.sub.3-10cycloalkyl; C.sub.1-6alkyloxy;
C.sub.1-6alkyloxyC.sub.1-6alkyloxy; C.sub.1-6alkylcarbonyl;
C.sub.1-6alkyloxycarbonyl; C.sub.1-6alkylsulfonyl;
cyanoC.sub.1-6alkyl; hydroxyC.sub.1-6alkyl;
hydroxyC.sub.1-6alkyloxy; hydroxyC.sub.1-6alkylamino;
aminoC.sub.1-6alkyloxy; di(C.sub.1-6alkyl)aminocarbonyl;
di(hydroxyC.sub.1-6alkyl)amino; (aryl)(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyloxy;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkylamino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkylaminoC.sub.1-6alkyl;
arylsulfonyl; arylsulfonylamino; aryloxy; aryloxyC.sub.1-6alkyl;
arylC.sub.2-6alkenediyl; di(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
di(C.sub.1-6alkyl)amino(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)amino(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
aminosulfonylamino(C.sub.1-6alkyl)amino;
aminosulfonylamino(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
di(C.sub.1-6alkyl)aminosulfonylamino(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminosulfonylamino(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
cyano; thiophenyl; thiophenyl substituted with
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl(C.sub.1-6alkyl)aminoC.sub.1-6alkyl,
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl,
C.sub.1-6alkylpiperazinylC.sub.1-6alkyl,
hydroxyC.sub.1-6alkylpiperazinylC.sub.1-6alkyl,
hydroxyC.sub.1-6alkyloxyC.sub.1-6alkylpiperazinylC.sub.1-6alkyl,
di(C.sub.1-6alkyl)aminosulfonylpiperazinylC.sub.1-6alkyl,
C.sub.1-6alkyloxypiperidinyl,
C.sub.1-6alkyloxypiperidinylC.sub.1-6alkyl,
morpholinylC.sub.1-6alkyl,
hydroxyC.sub.1-6alkyl(C.sub.1-6alkyl)aminoC.sub.1-6alkyl, or
di(hydroxyC.sub.1-6alkyl)aminoC.sub.1-6alkyl; furanyl; furanyl
substituted with hydroxyC.sub.1-6alkyl; benzofuranyl; imidazolyl;
oxazolyl; oxazolyl substituted with aryl and C.sub.1-6alkyl;
C.sub.1-6alkyltriazolyl; tetrazolyl; pyrrolidinyl; pyrrolyl;
piperidinylC.sub.1-6alkyloxy; morpholinyl;
C.sub.1-6alkylmorpholinyl; morpholinylC.sub.1-6alkyloxy;
morpholinylC.sub.1-6alkyl; morpholinylC.sub.1-6alkylamino;
morpholinylC.sub.1-6alkylaminoC.sub.1-6alkyl; piperazinyl;
C.sub.1-6alkylpiperazinyl;
C.sub.1-6alkylpiperazinylC.sub.1-6alkyloxy;
piperazinylC.sub.1-6alkyl; naphtalenylsulfonylpiperazinyl;
naphtalenylsulfonylpiperidinyl; naphtalenylsulfonyl:
C.sub.1-6alkylpiperazinylC.sub.1-6alkyl;
C.sub.1-6alkylpiperazinylC.sub.1-6alkylamino;
C.sub.1-6alkylpiperazinylC.sub.1-6alkylaminoC.sub.1-6alkyl,
C.sub.1-6alkylpiperazinylsulfonyl;
aminosulfonylpiperazinylC.sub.1-6alkyloxy;
aminosulfonylpiperazinyl; aminosulfonylpiperazinylC.sub.1-6alkyl;
di(C.sub.1-6alkyl)aminosulfonylpiperazinyl;
di(C.sub.1-6alkyl)aminosulfonylpiperazinylC.sub.1-6alkyl;
hydroxyC.sub.1-6alkylpiperazinyl;
hydroxyC.sub.1-6alkylpiperazinylC.sub.1-6alkyl;
C.sub.1-6alkyloxypiperidinyl;
C.sub.1-6alkyloxypiperidinylC.sub.1-6alkyl;
piperidinylaminoC.sub.1-6alkylamino;
piperidinylaminoC.sub.1-6alkylaminoC.sub.1-6alkyl;
(C.sub.1-6alkylpiperidinyl)(hydroxyC.sub.1-6alkyl)aminoC.sub.1-6alkylamin-
o;
(C.sub.1-6alkylpiperidinyl)(hydroxyC.sub.1-6alkyl)aminoC.sub.1-6alkylam-
inoC.sub.1-6alkyl;
hydroxyC.sub.1-6alkyloxyC.sub.1-6alkylpiperazinyl;
hydroxyC.sub.1-6alkyloxyC.sub.1-6alkylpiperazinylC.sub.1-6alkyl;
(hydroxyC.sub.1-6alkyl)(C.sub.1-6alkyl)amino;
(hydroxyC.sub.1-6alkyl)(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
hydroxyC.sub.1-6alkylaminoC.sub.1-6alkyl;
di(hydroxyC.sub.1-6alkyl)aminoC.sub.1-6alkyl;
pyrrolidinylC.sub.1-6alkyl; pyrrolidinylC.sub.1-6alkyloxy;
pyrazolyl; thiopyrazolyl; pyrazolyl substituted with two
substituents selected from C.sub.1-6alkyl or trihaloC.sub.1-6alkyl;
pyridinyl; pyridinyl substituted with C.sub.1-6alkyloxy, aryloxy or
aryl; pyrimidinyl; tetrahydropyrimidinylpiperazinyl;
tetrahydropyrimidinylpiperazinylC.sub.1-6alkyl; quinolinyl;
indolyl; phenyl; phenyl substituted with ones two or three
substituents independently selected from halo, amino, nitro,
C.sub.1-6alkyl, C.sub.1-6alkyloxy, hydroxyC.sub.1-4alkyl,
trifluoromethyl, trifluoromethyloxy, hydroxyC.sub.1-4alkyloxy,
C.sub.1-4alkylsulfonyl, C.sub.1-4alkyloxyC.sub.1-4alkyloxy,
C.sub.1-4alkyloxycarbonyl, aminoC.sub.1-4alkyloxy,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyloxy, di(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)aminocarbonyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkylaminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)amino(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)amino(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyl(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyl(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
aminosulfonylamino(C.sub.1-4alkyl)amino,
aminosulfonylamino(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminosulfonylamino(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)aminosulfonylamino(C.sub.1-4alkyl)aminoC.sub.1-6alkyl,
cyano, piperidinylC.sub.1-4alkyloxy, pyrrolidinylC.sub.1-4alkyloxy,
aminosulfonylpiperazinyl, aminosulfonylpiperazinylC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminosulfonylpiperazinyl,
di(C.sub.1-4alkyl)aminosulfonylpiperazinylC.sub.1-4alkyl,
hydroxyC.sub.1-4alkylpiperazinyl,
hydroxyC.sub.1-4alkylpiperazinylC.sub.1-4alkyl,
C.sub.1-4alkyloxypiperidinyl,
C.sub.1-4alkyloxypiperidinylC.sub.1-4alkyl,
hydroxyC.sub.1-4alkyloxyC.sub.1-4alkylpiperazinyl,
hydroxyC.sub.1-4alkyloxyC.sub.1-4alkylpiperazinylC.sub.1-4alkyl,
(hydroxyC.sub.1-4alkyl)(C.sub.1-4alkyl)amino,
(hydroxyC.sub.1-4alkyl)(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(hydroxyC.sub.1-4alkyl)amino,
di(hydroxyC.sub.1-4alkyl)aminoC.sub.1-4alkyl, furanyl, furanyl
substituted with --CH.dbd.CH--CH.dbd.CH--,
pyrrolidinylC.sub.1-4alkyl, pyrrolidinylC.sub.1-4alkyloxy,
morpholinyl, morpholinylC.sub.1-4alkyloxy,
morpholinylC.sub.1-4alkyl, morpholinylC.sub.1-4alkylamino,
morpholinylC.sub.1-4alkylaminoC.sub.1-4alkyl, piperazinyl,
C.sub.1-4alkylpiperazinyl,
C.sub.1-4alkylpiperazinylC.sub.1-4alkyloxy,
piperazinylC.sub.1-4alkyl, C.sub.1-4alkylpiperazinylC.sub.1-4alkyl,
C.sub.1-4alkylpiperazinylC.sub.1-4alkylamino,
C.sub.1-4alkylpiperazinylC.sub.1-4alkylaminoC.sub.1-6alkyl,
tetrahydropyrimidinylpiperazinyl,
tetrahydropyrimidinylpiperazinylC.sub.1-4alkyl,
piperidinylaminoC.sub.1-4alkylamino,
piperidinylaminoC.sub.1-4alkylaminoC.sub.1-4alkyl,
(C.sub.1-4alkylpiperidinyl)(hydroxyC.sub.1-4alkyl)aminoC.sub.1-4alkylamin-
o,
(C.sub.1-4alkylpiperidinyl)(hydroxyC.sub.1-4alkyl)aminoC.sub.1-4alkylam-
inoC.sub.1-4alkyl, pyridinylC.sub.1-4alkyloxy,
hydroxyC.sub.1-4alkylamino,
hydroxyC.sub.1-4alkylaminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkylamino, aminothiadiazolyl,
aminosulfonylpiperazinylC.sub.1-4alkyloxy, or
thiophenylC.sub.1-4alkylamino; each R.sup.5 and R.sup.6 can be
placed on the nitrogen in replacement of the hydrogen; aryl in the
above is phenyl, or phenyl substituted with one or more
substituents each independently selected from halo, C.sub.1-6alkyl,
C.sub.1-6alkyloxy, trifluoromethyl, cyano or hydroxycarbonyl.
14. A compound as claimed in claim 13 wherein t is 0; R.sup.1 is
--C(O)NR.sup.3R.sup.4, --C(O)--C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)N(OH)R.sup.7,
--NR.sup.8C(O)C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)C.dbd.N(OH)R.sup.7 or another Zn-chelating-group
wherein R.sup.3 and R.sup.4 are each independently selected from
hydrogen, hydroxy, hydroxyC.sub.1-6alkyl or aminoC.sub.1-6alkyl;
R.sup.2 is hydrogen, hydroxy, amino, hydroxyC.sub.1-6alkyl,
C.sub.1-6alkyl, C.sub.1-6alkyloxy, arylC.sub.1-6alkyl,
aminocarbonyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylaminoC.sub.1-6alkyl or
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl; -L- is a bivalent radical
selected from C.sub.1-6alkanediyl, carbonyl or sulfonyl;
##STR00098## is a radical selected from (a-1), (a-3), (a-4), (a-5),
(a-6), (a-7), (a-8), (a-9), (a-10), (a-11), (a-12), (a-13), (a-14),
(a-15), (a-16), (a-17), (a-18), (a-1 g), (a-20), (a-21), (a-22),
(a-23), (a-24), (a-25), (a-26), (a-28), (a-29), (a-30), (a-31),
(a-32), (a-33), (a-34), (a-35), (a-36), (a-37), (a-38), (a-39),
(a-40), (a-41), (a-42), (a-44), (a-45), (a-46), (a-47), (a-48) or
(a-51); s is 0, 1, 2, 3 or 4; R.sup.5 is hydrogen; halo; hydroxy;
amino; nitro; trihaloC.sub.1-6alkyl; trihaloC.sub.1-6alkyloxy;
C.sub.1-6alkyl; C.sub.1-6alkyloxy; C.sub.1-6alkylcarbonyl;
C.sub.1-6alkyloxycarbonyl; C.sub.1-6alkylsulfonyl;
hydroxyC.sub.1-6alkyl; aryloxy; di(C.sub.1-6alkyl)amino; cyano;
thiophenyl; furanyl; furanyl substituted with
hydroxyC.sub.1-6alkyl; benzofuranyl; imidazolyl; oxazolyl; oxazolyl
substituted with aryl and C.sub.1-6alkyl; C.sub.1-6alkyltriazolyl;
tetrazolyl; pyrrolidinyl; pyrrolyl; morpholinyl;
C.sub.1-6alkylmorpholinyl; piperazinyl; C.sub.1-6alkylpiperazinyl;
hydroxyC.sub.1-6alkylpiperazinyl; C.sub.1-6alkyloxypiperidinyl;
pyrazolyl; pyrazolyl substituted with one or two substituents
selected from C.sub.1-6alkyl or trihaloC.sub.1-6alkyl; pyridinyl;
pyridinyl substituted with C.sub.1-6alkyloxy, aryloxy or aryl;
pyrimidinyl; quinolinyl; indole; phenyl; or phenyl substituted with
one or two substituents independently selected from halo,
C.sub.1-6alkyl, C.sub.1-6alkyloxy or trifluoromethyl; and R.sup.6
is hydrogen; halo; hydroxy; amino; nitro; trihaloC.sub.1-6alkyl;
trihaloC.sub.1-6alkyloxy; C.sub.1-6alkyl; C.sub.1-6alkyloxy;
C.sub.1-6alkylcarbonyl; C.sub.1-6alkyloxycarbonyl;
C.sub.1-6alkylsulfonyl; hydroxyC.sub.1-6alkyl; aryloxy;
di(C.sub.1-6alkyl)amino; cyano; pyridinyl; phenyl; or phenyl
substituted with one or two substituents independently selected
from halo, C.sub.1-6alkyl, C.sub.1-6alkyloxy or
trifluoromethyl.
15. A compound as claimed in claim 13 wherein n is 0, 1 or 2; m is
0, 1 or 2; each Q is ##STR00099## each X is nitrogen; R.sup.1 is
--C(O)NH(OH); R.sup.2 is hydrogen L is a bivalent radical selected
from carbonyl, sulfonyl, or C.sub.1-6alkanediyl substituted with
phenyl; ##STR00100## is a radical selected from (a-1), (a-20) or
(a-43); s is 0 or 1; and each R.sup.5 is independently selected
from hydrogen or phenyl.
16. A compound as claimed in claim 13 wherein n is 0, 1 or 2; m is
1 or 2; each Q is ##STR00101## each X is nitrogen; R.sup.1 is
--C(O)NH(OH); R.sup.2 is hydrogen; -L- is a bivalent radical
selected from carbonyl or sulfonyl; ##STR00102## is a radical
selected from (a-1) or (a-20); each s is independently 0 or 1; and
each R.sup.5 is independently selected from hydrogen or aryl.
17. A compound according to claim 13 selected from the following
compounds No. 1, No. 3, No. 5, No. 4, No. 14, No. 12, No. 7, No. 8
and No. 9. ##STR00103## ##STR00104##
18. A pharmaceutical composition comprising pharmaceutically
acceptable carriers and as an active ingredient a therapeutically
effective amount of a compound as claimed in claim 13.
19. A process of preparing a pharmaceutical composition as claimed
in claim 18 wherein the pharmaceutically acceptable carriers and
the compound are intimately mixed.
20. The method of treating proliferative disease comprising
administering to a patient in need of such treatment, an
anti-proliferative disease-effective amount of a compound of claim
13.
21. A process for preparing a compound as claimed in claim 13,
characterized by reacting an intermediate of formula (II) with an
appropriate acid, such as for example, trifluoro acetic acid,
yielding a hydroxamic acid of formula (I-a), wherein R.sup.1 is
--C(O)NH(OH). ##STR00105##
22. A method of detecting or identifying a histone deacetylase
(HDAC) in a biological sample comprising detecting or measuring the
formation of a complex between a labelled compound as defined in
claim 13 and a HDAC.
23. A combination of an anti-cancer agents and a compound of claim
13.
Description
[0001] This invention concerns compounds having histone deacetylase
(HDAC) inhibiting enzymatic activity. It further relates to
processes for their preparation, to compositions comprising them,
as well as their use, both in vitro and in vivo, to inhibit HDAC
and as a medicine, for instance as a medicine to inhibit
proliferative conditions, such as cancer and psoriasis.
[0002] In all eukaryotic cells, genomic DNA in chromatine
associates with histones to form nucleosomes. Each nucleosome
consists of a protein octamer made up of two copies of each
histones H2A, H2B, H3 and H4. DNA winds around this protein core,
with the basic amino acids of the histones interacting with the
negatively charged phosphate groups of the DNA. The most common
posttranslational modification of these core histones is the
reversible acetylation of the .epsilon.-amino groups of conserved,
highly basic N-terminal lysine residues. The steady state of
histone acetylation is established by the dynamic equilibrium
between competing histone acetyltransferase(s) and histone
deacetylase(s) herein referred to as "HDAC". Histone acetylation
and deacetylation has long been linked to transcriptional control.
The recent cloning of the genes encoding different histone
acetyltransferases and histone deacetylases provided a possible
explanation for the relationship between histone acetylation and
transcriptional control. The reversible acetylation of histories
can result in chromatin remodelling and as such act as a control
mechanism for gene transcription. In general, hyperacetylation of
histones facilitates gene expression, whereas histone deacetylation
is correlated with transcriptional repression. Histone
acetyltransferases were shown to act as transcriptional
coactivators, whereas histone deacetylases were found to belong to
transcriptional repression pathways.
[0003] The dynamic equilibrium between histone acetylation and
deacetylation is essential for normal cell growth. Inhibition of
histone deacetylase results in cell cycle arrest, cellular
differentiation, apoptosis and reversal of the transformed
phenotype. Therefore HDAC inhibitors can have great therapeutic
potential in the treatment of cell proliferative diseases or
conditions (Marks et al., Nature Reviews: Cancer 1: 194-202,
2001)
[0004] The study of inhibitors of histone deacetylases (HDAC)
indicates that indeed these enzymes play an important role in cell
proliferation and differentiation. The inhibitor Trichostatin A
(TSA) causes cell cycle arrest at both G1 and G2 phases, reverts
the transformed phenotype of different cell lines, and induces
differentiation of Friend leukemia cells and others. TSA (and
suberoylanilide hydroxamic acid SAHA) have been reported to inhibit
cell growth, induce terminal differentiation, and prevent the
formation of tumours in mice (Finnin et al., Nature, 401: 188-193,
1999).
[0005] Trichostatin A has also been reported to be useful in the
treatment of fibrosis, e.g. liver fibrosis and liver cirrhosis.
(Geerts et al., European Patent Application EP 0 827 742, published
11 Mar. 1998).
[0006] Patent application DE 4228792 published on Mar. 3, 1994
describes compounds of general formula
##STR00003##
It provides processes for the preparation of these compounds,
compositions comprising them, as well as their use as a
fungicide.
[0007] Patent application WO 97/23216 published on Jul. 3, 1997
describes selective antagonists of N-methyl-D-aspartate receptor
subtypes of general formula
##STR00004##
It presents pharmaceutical compositions containing these compounds
and discloses the usefulness of these compounds for the treatment
of neurological and other conditions.
[0008] U.S. Pat. No. 5,952,349 published on Sep. 14, 1999 discloses
compounds of general formula
##STR00005##
It further describes pharmaceutical compositions containing said
compounds, the use of said compounds for the treatment of cognitive
disorders and the use of said compounds in combination with
acetylcholinesterase inhibitors.
[0009] Patent application WO 00/71516 published on Nov. 30, 2000
describes compounds of general formula A-Y-D-E-G-J-Z-L having
activity against mammalian factor Xa, pharmaceutical compositions
containing them and the use of said compounds for preventing or
treating coagulation disorders.
[0010] Patent application WO 02/42271 describes compounds of
general formula
##STR00006##
It further provides pharmaceutical compositions comprising these
compounds as well as the use of these compounds as a medicine for
the treatment of hyperlipidemia, obesity and type II diabetes.
[0011] Patent application WO 02/00651 published on Jan. 3, 2002
discloses inhibitors of trypsin-like serine protease enzymes of
general formulas
##STR00007##
It presents pharmaceutical compositions containing said compounds
and the use of said compounds as anti-coagulant agents for
treatment and prevention of thromboembolic disorders.
[0012] Patent application WO 02/18335 published on Mar. 7, 2002
discloses compounds of general formula
##STR00008##
It provides for the use of said compounds in the treatment of
CCR3-related diseases.
[0013] Patent application WO 03/000653 published on 3 Jan. 2003
describes compounds of general formula
##STR00009##
It further provides processes for the preparation of these
compounds, compositions comprising them, as well as their use as a
thrombin-inhibiting agent.
[0014] The compounds of the present invention differ from the prior
art described in DE4228792, WO 97/23216, U.S. Pat. No. 5,952,349,
WO 00/71516, WO 02/00651, WO 02/18335 and WO 03/000653 in structure
and in activity.
[0015] Patent application WO01/38322 published on May 31, 2001
discloses amongst others inhibitors of histone deacetylase of
general formula Cy-L.sup.1-Ar--Y.sup.1--C(O)--NH-Z, providing
compositions and methods for treating cell proliferative diseases
and conditions.
[0016] Patent application WO01/70675 published on 27 Sep. 2001
discloses inhibitors of histone deacetylase of formula
Cy.sup.2-Cy.sup.1-X--Y.sup.1--W and Cy-S(O).sub.2--NH--Y.sup.3--W
and further provides compositions and methods for treating cell
proliferative diseases and conditions.
[0017] The problem to be solved is to provide histone deacetylase
inhibitors with high enzymatic activity and also show advantageous
properties such as cellular activity and increased bioavailability,
preferably oral bioavailability, and have little or no side
effects.
[0018] The novel compounds of the present invention solve the above
described problem. The compounds differ from the prior art in
structure.
[0019] The compounds of the present invention show excellent
in-vitro histone deacetylase inhibiting enzymatic activity. The
present compounds have advantageous properties with regard to
cellular activity and specific properties with regard to inhibition
of cell cycle progression at both G1 and G2 checkpoints (21
induction capacity). The compounds of the present invention show
good metabolic stability and high bioavailability and more
particular they show oral bioavailability.
[0020] This invention concerns compounds of formula (I)
##STR00010##
the N-oxide forms, the pharmaceutically acceptable addition salts
and the stereo-chemically isomeric forms thereof, wherein [0021] n
is 0, 1, 2 or 3 and when n is 0 then a direct bond is intended;
[0022] m is 0, 1, 2 or 3 and when m is 0 then a direct bond is
intended; [0023] t is 0 or 1 and when t is 0 then a direct bond is
intended; [0024] each Q is nitrogen or
[0024] ##STR00011## [0025] each X is nitrogen or
[0025] ##STR00012## [0026] each Y is nitrogen or
[0026] ##STR00013## [0027] each Z is --CH.sub.2-- or --O--; [0028]
R.sup.1 is --C(O)NR.sup.3R.sup.4, --N(H)C(O)R.sup.7,
--C(O)--C.sub.1-6alkanediylSR.sup.7, --NR.sup.8C(O)N(OH)R.sup.7,
--NR.sup.8C(O)C.sub.1-16alkanediylSR.sup.7,
--NR.sup.8C(O)C.dbd.N(OH)R.sup.7 or another Zn-chelating-group
wherein R.sup.3 and R.sup.4 are each independently selected from
hydrogen, hydroxy, C.sub.1-6alkyl, hydroxyC.sub.1-6alkyl,
aminoC.sub.1-6alkyl or aminoaryl; [0029] R.sup.7 is independently
selected from hydrogen, C.sub.1-6alkyl, C.sub.1-6alkylcarbonyl,
arylC.sub.1-6alkyl, C.sub.1-6alkylpyrazinyl, pyridinone,
pyrrolidinone or methylimidazolyl; [0030] R.sup.8 is independently
selected from hydrogen or C.sub.1-6alkyl; [0031] R.sup.2 is
hydrogen, hydroxy, amino, hydroxyC.sub.1-6alkyl, C.sub.1-6alkyl,
C.sub.1-6alkyloxy, arylC.sub.1-6alkyl, aminocarbonyl,
hydroxycarbonyl, aminoC.sub.1-16alkyl, aminocarbonylC.sub.1-6alkyl,
hydroxycarbonylC.sub.1-6alkyl, hydroxyaminocarbonyl,
C.sub.1-6alkyloxycarbonyl, C.sub.1-6alkylaminoC.sub.1-6alkyl or
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl; [0032] -L- is a bivalent
radical selected from C.sub.1-6alkanediyl, carbonyl, sulfonyl, or
C.sub.1-6alkanediyl substituted with phenyl;
##STR00014##
[0032] is a radical selected from
##STR00015## ##STR00016## ##STR00017## ##STR00018##
##STR00019##
wherein each s is independently 0, 1, 2, 3, 4 or 5; [0033] each
R.sup.5 and R.sup.6 are independently selected from hydrogen; halo;
hydroxy; amino; nitro; trihaloC.sub.1-6alkyl;
trihaloC.sub.1-6alkyloxy; C.sub.1-6alkyl; C.sub.1-6alkyl
substituted with aryl and C.sub.3-10cycloalkyl; C.sub.1-6alkyloxy;
C.sub.1-6alkyloxyC.sub.1-6alkyloxy; C.sub.1-6alkylcarbonyl;
C.sub.1-6alkyloxycarbonyl; C.sub.1-6alkylsulfonyl;
cyanoC.sub.1-6alkyl; hydroxyC.sub.1-6alkyl;
hydroxyC.sub.1-6alkyloxy; hydroxyC.sub.1-6alkylamino;
aminoC.sub.1-6alkyloxy; di(C.sub.1-6alkyl)aminocarbonyl;
di(hydroxyC.sub.1-6alkyl)amino; (aryl)(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyloxy;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkylamino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkylaminoC.sub.1-6alkyl;
arylsulfonyl; arylsulfonylamino; aryloxy; aryloxyC.sub.1-6alkyl;
arylC.sub.2-6alkenediyl; di(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
di(C.sub.1-6alkyl)amino(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)amino(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
aminosulfonylamino(C.sub.1-6alkyl)amino;
aminosulfonylamino(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
di(C.sub.1-6alkyl)aminosulfonylamino(C.sub.1-6alkyl)amino;
di(C.sub.1-6alkyl)aminosulfonylamino(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
cyano; thiophenyl; thiophenyl substituted with
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl(C.sub.1-6alkyl)aminoC.sub.1-6alkyl,
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl,
C.sub.1-6alkylpiperazinylC.sub.1-6alkyl,
hydroxyC.sub.1-6alkylpiperazinylC.sub.1-6alkyl,
hydroxyC.sub.1-6alkyloxyC.sub.1-6alkylpiperazinylC.sub.1-6alkyl,
di(C.sub.1-6alkyl)aminosulfonylpiperazinylC.sub.1-6alkyl,
C.sub.1-6alkyloxypiperidinyl,
C.sub.1-6alkyloxypiperidinylC.sub.1-6alkyl,
morpholinylC.sub.1-6alkyl,
hydroxyC.sub.1-6alkyl(C.sub.1-6alkyl)aminoC.sub.1-6alkyl, or
dihydroxyC.sub.1-6alkyl)aminoC.sub.1-6alkyl; furanyl; furanyl
substituted with hydroxyC.sub.1-6alkyl; benzofuranyl; imidazolyl;
oxazolyl; oxazolyl substituted with aryl and C.sub.1-6alkyl;
C.sub.1-6alkyltriazolyl; tetrazolyl; pyrrolidinyl; pyrrolyl;
piperidinylC.sub.1-6alkyloxy; morpholinyl;
C.sub.1-6alkylmorpholinyl; morpholinylC.sub.1-6alkyloxy;
morpholinylC.sub.1-6alkyl; morpholinylC.sub.1-6alkylamino;
morpholinylC.sub.1-6alkylaminoC.sub.1-6alkyl; piperazinyl;
C.sub.1-6alkylpiperazinyl;
C.sub.1-6alkylpiperazinylC.sub.1-6alkyloxy;
piperazinylC.sub.1-6alkyl; naphtalenylsulfonylpiperazinyl;
naphtalenylsulfonylpiperidinyl; naphtalenylsulfonyl;
C.sub.1-6alkylpiperazinylC.sub.1-6alkyl;
C.sub.1-6alkylpiperazinylC.sub.1-6alkylamino;
C.sub.1-6alkylpiperazinylC.sub.1-6alkylaminoC.sub.1-6alkyl;
C.sub.1-6alkylpiperazinylsulfonyl;
aminosulfonylpiperazinylC.sub.1-6alkyloxy;
aminosulfonylpiperazinyl; aminosulfonylpiperazinylC.sub.1-6alkyl;
di(C.sub.1-6alkyl)aminosulfonylpiperazinyl;
di(C.sub.1-6alkyl)aminosulfonylpiperazinyC.sub.1-6alkyl;
hydroxyC.sub.1-6alkylpiperazinyl;
hydroxyC.sub.1-6alkylpiperazinylC.sub.16alkyl;
C.sub.1-6alkyloxypiperidinyl;
C.sub.1-6alkyloxypiperidinylC.sub.1-6alkyl;
piperidinylaminoC.sub.1-6alkylamino;
piperidinylaminoiC.sub.1-6alkylaminoC.sub.1-6alkyl;
(C.sub.1-6alkylpiperidinyl)(hydroxyC.sub.1-4alkyl)aminoC.sub.1-6alkylamin-
o;
(C.sub.1-6alkylpiperidinyl)(hydroxyC.sub.1-5alkyl)aminoC.sub.1-6alkylam-
inoC.sub.1-6alkyl;
hydroxyC.sub.1-6alkyloxyC.sub.1-6alkylpiperazinyl;
hydroxyC.sub.1-6alkyloxyC.sub.1-6alkylpiperazinylC.sub.1-16alkyl;
(hydroxyC.sub.1-6alkyl)(C.sub.1-6alkyl)amino;
(hydroxyC.sub.1-6alkyl)(C.sub.1-6alkyl)aminoC.sub.1-6alkyl;
hydroxyC.sub.1-6alkylaminoC.sub.1-6alkyl;
di(hydroxyC.sub.1-6alkyl)aminoC.sub.1-6alkyl;
pyrrolidinylC.sub.1-6alkyl; pyrrolidinylC.sub.1-6alkyloxy;
pyrazolyl; thiopyrazolyl; pyrazolyl substituted with two
substituents selected from C.sub.1-6alkyl or trihaloC.sub.1-6alkyl;
pyridinyl; pyridinyl substituted with C.sub.1-6alkyloxy, aryloxy or
aryl; pyrimidinyl; tetrahydropyrimidinylpiperazinyl;
tetrahydropyrimidinylpiperazinylC.sub.1-6alkyl; quinolinyl;
indolyl; phenyl; phenyl substituted with one, two or three
substituents independently selected from halo, amino, nitro,
C.sub.1-6alkyl, C.sub.1-6alkyloxy, hydroxyC.sub.1-4alkyl,
trifluoromethyl, trifluoromethyloxy, hydroxyC.sub.1-4alkyloxy,
C.sub.1-4alkylsulfonyl, C.sub.1-4alkyloxyC.sub.1-4alkyloxy,
C.sub.1-4alkyloxycarbonyl, aminoC.sub.1-4alkyloxy,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyloxy, di(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)aminocarbonyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkylaminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)amino(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)amino(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyl(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkyl(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
aminosulfonylamino(C.sub.1-4alkyl)amino,
aminosulfonylamino(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminosulfonylamino(C.sub.1-4alkyl)amino,
di(C.sub.1-4alkyl)aminosulfonylamino(C.sub.1-4alkyl)aminoC.sub.1-6alkyl,
cyano, piperidinylC.sub.1-4alkyloxy, pyrrolidinylC.sub.1-4alkyloxy,
aminosulfonylpiperazinyl, aminosulfonylpiperazinylC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminosulfonylpiperazinyl,
di(C.sub.1-4alkyl)aminosulfonylpiperazinylC.sub.1-4alkyl,
hydroxyC.sub.1-4alkylpiperazinyl,
hydroxyC.sub.1-4alkylpiperazinylC.sub.1-4alkyl,
C.sub.1-4alkyloxypiperidinyl,
C.sub.1-4alkyloxypiperidinylC.sub.1-4alkyl,
hydroxyC.sub.1-4alkyloxyC.sub.1-4alkylpiperazinyl,
hydroxyC.sub.1-4alkyloxyC.sub.1-4alkylpiperazinylC.sub.1-4alkyl,
(hydroxyC.sub.1-4alkyl)(C.sub.1-4alkyl)amino,
(hydroxyC.sub.1-4alkyl)(C.sub.1-4alkyl)aminoC.sub.1-4alkyl,
dihydroxyC.sub.1-4alkyl)amino,
di(hydroxyC.sub.1-4alkyl)aminoC.sub.1-4alkyl, furanyl, furanyl
substituted with --CH.dbd.CH---CH.dbd.CH--,
pyrrolidinylC.sub.1-4alkyl, pyrrolidinylC.sub.1-4alkyloxy,
morpholinyl, morpholinylC.sub.1-4alkyloxy,
morpholinylC.sub.1-4alkyl, morpholinylC.sub.1-4alkylamino,
morpholinylC.sub.1-4alkylaminoC.sub.1-4alkyl, piperazinyl,
C.sub.1-4alkylpiperazinyl,
C.sub.1-4alkylpiperazinylC.sub.1-4alkyloxy,
piperazinylC.sub.1-4alkyl, C.sub.1-4alkylpiperazinylC.sub.1-4alkyl,
C.sub.1-4alkylpiperazinylC.sub.1-4alkylamino,
C.sub.1-4alkylpiperazinylC.sub.1-4alkylaminoC.sub.1-6alkyl,
tetrahydropyrimidinylpiperazinyl,
tetrahydropyrimidinylpiperazinylC.sub.1-4alkyl,
piperidinylaminoC.sub.1-4alkylamino,
piperidinylaminoC.sub.1-4alkylaminoC.sub.1-4alkyl,
(C.sub.1-4alkylpiperidinyl)(hydroxyC.sub.1-4alkyl)aminoC.sub.1-4alkylamin-
o,
(C.sub.1-4alkylpiperidinyl)(hydroxyC.sub.1-4alkyl)aminoC.sub.1-4alkylam-
inoC.sub.1-4alkyl, pyridinylC.sub.1-4alkyloxy,
hydroxyC.sub.1-4alkylamino,
hydroxyC.sub.1-4alkylaminoC.sub.1-4alkyl,
di(C.sub.1-4alkyl)aminoC.sub.1-4alkylamino, aminothiadiazolyl,
aminosulfonylpiperazinylC.sub.1-4alkyloxy, or
thiophenylC.sub.1-4alkylamino; [0034] each R.sup.5 and R.sup.6 can
be placed on the nitrogen in replacement of the hydrogen; [0035]
aryl in the above is phenyl, or phenyl substituted with one or more
substituents each independently selected from halo, C.sub.1-6alkyl,
C.sub.1-6alkyloxy, trifluoromethyl, cyano or hydroxycarbonyl.
[0036] The term "histone deacetylase inhibitor" or "inhibitor of
histone deacetylase" is used to identify a compound, which is
capable of interacting with a histone deacetylase and inhibiting
its activity, more particularly its enzymatic activity. Inhibiting
histone deacetylase enzymatic activity means reducing the ability
of a histone deacetylase to remove an acetyl group from a histone.
Preferably, such inhibition is specific, i.e. the histone
deacetylase inhibitor reduces the ability of a histone deacetylase
to remove an acetyl group from a histone at a concentration that is
lower than the concentration of the inhibitor that is required to
produce some other, unrelated biological effect.
[0037] As used in the foregoing definitions and hereinafter, halo
is generic to fluoro, chloro, bromo and iodo; C.sub.1-4alkyl
defines straight and branched chain saturated hydrocarbon radicals
having from 1 to 4 carbon atoms such as, e.g. methyl, ethyl,
propyl, butyl, 1-methylethyl, 2-methylpropyl and the like;
C.sub.1-6alkyl includes C.sub.1-4alkyl and the higher homologues
thereof having 5 to 6 carbon atoms such as, for example, pentyl,
2-methylbutyl, hexyl, 2-methylpentyl and the like;
C.sub.1-6alkanediyl defines bivalent straight and branched chained
saturated hydrocarbon radicals having from 1 to 6 carbon atoms such
as, for example, methylene, 1,2-ethanediyl,
1,3-propanediylC.sub.1-4-butanediyl, 1,5-pentanediyl,
1,6-hexanediyl and the branched isomers thereof such as,
2-methylpentanediyl, 3-methylpentanediyl, 2,2-dimethylbutanediyl,
2,3-dimethylbutanediyl and the like; trihaloC.sub.1-6alkyl defines
C.sub.1-6alkyl containing three identical or different halo
substituents for example trifluoromethyl; C.sub.2-6alkenediyl
defines bivalent straight and branched chain hydrocarbon radicals
containing one double bond and having from 2 to 6 carbon atoms such
as, for example, ethenediyl, 2-propenediyl, 3-butenediyl,
2-pentenediyl, 3-pentenediyl, 3-methyl-2-butenediyl, and the like;
and aminoaryl defines aryl substituted with amino.
[0038] The term "another Zn-chelating group" refers to a group,
which is capable of interacting with a Zn-ion, which can be present
at an enzymatic binding site. Pharmaceutically acceptable addition
salts encompass pharmaceutically acceptable acid addition salts and
pharmaceutically acceptable base addition salts. The
pharmaceutically acceptable acid addition salts as mentioned
hereinabove are meant to comprise the therapeutically active
non-toxic acid addition salt forms, which the compounds of formula
(I) are able to form. The compounds of formula (I) which have basic
properties can be converted in their pharmaceutically acceptable
acid addition salts by treating said base form with an appropriate
acid. Appropriate acids comprise, for example, inorganic acids such
as hydrohalic acids, e.g. hydrochloric or hydrobromic acid;
sulfuric; nitric; phosphoric and the like acids; or organic acids
such as, for example, acetic, trifluoroacetic, propanoic,
hydroxyacetic, lactic, pyruvic, oxalic, malonic, succinic (i.e.
butanedioic acid), maleic, fumaric, malic, tartaric, citric,
methanesulfonic, ethanesulfonic, benzenesulfonic,
p-toluenesulfonic, cyclamic, salicylic, p-amino-salicylic, pamoic
and the like acids.
[0039] The compounds of formula (I) which have acidic properties
may be converted in their pharmaceutically acceptable base addition
salts by treating said acid form with a suitable organic or
inorganic base. Appropriate base salt forms comprise, for example,
the ammonium salts, the alkali and earth alkaline metal salts, e.g.
the lithium, sodium, potassium, magnesium, calcium salts and the
like, salts with organic bases, e.g. the benzathine,
N-methyl-D-glucamine, hydrabamine salts, and salts with amino acids
such as, for example, arginine, lysine and the like.
[0040] The term "acid or base addition salts" also comprises the
hydrates and the solvent addition forms, which the compounds of
formula (I) are able to form. Examples of such forms are e.g.
hydrates, alcoholates and the like.
[0041] The term "stereochemically isomeric forms of compounds of
formula (I)", as used herein, defines all possible compounds made
up of the same atoms bonded by the same sequence of bonds but
having different three-dimensional structures, which are not
interchangeable, which the compounds of formula (I) may possess.
Unless otherwise mentioned or indicated, the chemical designation
of a compound encompasses the mixture of all possible
stereochemically isomeric forms, which said compound might possess.
Said mixture may contain all diastereomers and/or enantiomers of
the basic molecular structure of said compound. All
stereochemically isomeric forms of the compounds of formula (I)
both in pure form or in admixture with each other are intended to
be embraced within the scope of the present invention.
[0042] The N-oxide forms of the compounds of formula (I) are meant
to comprise those compounds of formula (I) wherein one or several
nitrogen atoms are oxidized to the so-called N-oxide, particularly
those N-oxides wherein one or more of the piperidine-, piperazine
or pyridazinyl-nitrogens are N-oxidized.
[0043] Some of the compounds of formula (I) may also exist in their
tautomeric forms. Such forms although not explicitly indicated in
the above formula are intended to be included within the scope of
the present invention.
[0044] Whenever used hereinafter, the term "compounds of formula
(I)" is meant to include also the pharmaceutically acceptable
addition salts and all stereoisomeric forms.
[0045] As used herein, the terms "histone deacetylase" and "HDAC"
are intended to refer to any one of a family of enzymes that remove
acetyl groups from the .epsilon.-amino groups of lysine residues at
the N-terminus of a histone. Unless otherwise indicated by context,
the term "histone" is meant to refer to any histone protein,
including H1, H2A, H2B, H3, H4, and H5, from any species. Human
HDAC proteins or gene products, include, but are not limited to,
HDAC-1, HDAC-2, HDAC-3, HDAC-4, HDAC-5, HDAC-6, HDAC-7, HDAC-8,
HDAC-9 and HDAC-10. The histone deacetylase can also be derived
from a protozoal or fungal source.
[0046] A first group of interesting compounds consists of those
compounds of formula (I) wherein one or more of the following
restrictions apply: [0047] a) n is 0, 1 or 2; [0048] b) m is 1, or
2, [0049] c) each Q is
[0049] ##STR00020## [0050] d) each X is nitrogen; [0051] e) R.sup.1
is C(O)NH(OH); [0052] f) R.sup.2 is hydrogen; [0053] g) -L- is a
bivalent radical selected from carbonyl, sulfonyl, or
C.sub.1-6alkanediyl substituted with phenyl; [0054] h)
##STR00021##
[0054] is a radical selected from (a-1), (a-20) or (a-43); [0055]
i) each s is independently 0 or 1; [0056] j) each R.sup.5 is
independently selected from hydrogen or phenyl.
[0057] A second group of interesting compounds consists of those
compounds of formula (I) wherein one or more of the following
restrictions apply: [0058] a) n is 0, 1 or 2; [0059] b) m is 1 or
2; [0060] c) each Q is
[0060] ##STR00022## [0061] d) each X is nitrogen; [0062] d) R.sup.1
is --C(O)NH(OH); [0063] f) R.sup.2 is hydrogen; [0064] e) -L- is a
bivalent radical selected from carbonyl or sulfonyl; [0065] f)
##STR00023##
[0065] is a radical selected from (a-1) or (a-20); [0066] g) each s
is independently 0 or 1; [0067] h) each R.sup.5 is independently
selected from hydrogen or aryl.
[0068] A third group of interesting compounds consists of those
compounds of formula (I) wherein R.sup.1 is --C(O)NH(OH).
[0069] A fourth group of interesting compounds consists of those
compounds of formula (I) wherein one or more of the following
restrictions apply: [0070] a) t is 0; [0071] b) R.sup.1 is
--C(O)NR.sup.3R.sup.4, --C(O)--C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)N(OH)R.sup.7,
--NR.sup.8C(O)C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)C.dbd.N(OH)R.sup.7 or another Zn-chelating-group
wherein R.sup.3 and R.sup.4 are each independently selected from
hydrogen, hydroxy, hydroxyC.sub.1-6alkyl or aminoC.sub.1-6alkyl;
[0072] c) R.sup.2 is hydrogen, hydroxy, amino,
hydroxyC.sub.1-6alkyl, C.sub.1-6alkyl, C.sub.1-6alkyloxy,
arylC.sub.1-6alkyl, aminocarbonyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylaminoC.sub.1-6alkyl or
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl; [0073] d) -L- is a bivalent
radical selected from C.sub.1-6alkanediyl, carbonyl or sulfonyl;
[0074] e)
##STR00024##
[0074] is a radical selected from (a-1), (a-3), (a-4), (a-5),
(a-6), (a-7), (a-8), (a-9), (a-10), (a-11), (a-12), (a-13), (a-14),
(a-15), (a-16), (a-17), (a-18), (a-19), (a-20), (a-21), (a-22),
(a-23), (a-24), (a-25), (a-26), (a-28), (a-29), (a-30), (a-31),
(a-32), (a-33), (a-34), (a-35), (a-36), (a-37), (a-38), (a-39),
(a-40), (a-41), (a-42), (a-44), (a-45), (a-46), (a-47), (a-48) or
(a-51); [0075] f) each s is independently 0, 1, 2, 3 or 4; [0076]
g) R.sup.5 is hydrogen; halo; hydroxy; amino; nitro;
trihaloC.sub.1-6alkyl; trihaloC.sub.1-6alkyloxy; C.sub.1-6alkyl;
C.sub.1-6alkyloxy; C.sub.1-6alkylcarbonyl;
C.sub.1-6alkyloxycarbonyl; C.sub.1-6alkylsulfonyl;
hydroxyC.sub.1-6alkyl; aryloxy; di(C.sub.1-6alkyl)amino; cyano;
thiophenyl; furanyl; furanyl substituted with
hydroxyC.sub.1-6alkyl; benzofuranyl; imidazolyl; oxazolyl; oxazolyl
substituted with aryl and C.sub.1-6alkyl; C.sub.1-6alkyltriazolyl;
tetrazolyl; pyrrolidinyl; pyrrolyl; morpholinyl;
C.sub.1-6alkylmorpholinyl; piperazinyl; C.sub.1-6alkylpiperazinyl;
hydroxyC.sub.1-6alkylpiperazinyl; C.sub.1-6alkyloxypiperidinyl;
pyrazolyl; pyrazolyl substituted with one or two substituents
selected from C.sub.1-6alkyl or trihaloC.sub.1-6alkyl; pyridinyl;
pyridinyl substituted with C.sub.1-6alkyloxy, aryloxy or aryl;
pyrimidinyl; quinolinyl; indole; phenyl; or phenyl substituted with
one or two substituents independently selected from halo,
C.sub.1-6alkyl, C.sub.1-6alkyloxy or trifluoromethyl; [0077] h)
R.sup.6 is hydrogen; halo; hydroxy; amino; nitro;
trihaloC.sub.1-6alkyl; trihaloC.sub.1-6alkyloxy; C.sub.1-6alkyl;
C.sub.1-6alkyloxy; C.sub.1-6alkylcarbonyl;
C.sub.1-6alkyloxycarbonyl; C.sub.1-6alkylsulfonyl;
hydroxyC.sub.1-6alkyl; aryloxy; di(C.sub.1-6alkyl)amino; cyano;
pyridinyl; phenyl; or phenyl substituted with one or two
substituents independently selected from halo, C.sub.1-6alkyl,
C.sub.1-6alkyloxy or trifluoromethyl.
[0078] A group of preferred compounds consists of those compounds
of formula (I) wherein [0079] t is 0; [0080] R.sup.1 is
--C(O)NR.sup.3R.sup.4, --C(O)--C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)N(OH)R.sup.7,
--NR.sup.8C(O)C.sub.1-6alkanediylSR.sup.7,
--NR.sup.8C(O)C.dbd.N(OH)R.sup.7 or another Zn-chelating-group
wherein R.sup.3 and R.sup.4 are each independently selected from
hydrogen, hydroxy, hydroxyC.sub.1-6alkyl or aminoC.sub.1-6alkyl;
[0081] R.sup.2 is hydrogen, hydroxy, amino, hydroxyC.sub.1-6alkyl,
C.sub.1-6alkyl, C.sub.1-6alkyloxy, arylC.sub.1-6alkyl,
aminocarbonyl, aminoC.sub.1-6alkyl,
C.sub.1-6alkylaminoC.sub.1-6alkyl or
di(C.sub.1-6alkyl)aminoC.sub.1-6alkyl; [0082] -L- is a bivalent
radical selected from C.sub.1-6alkanediyl, carbonyl or
sulfonyl;
##STR00025##
[0082] is a radical selected from (a-1), (a-3), (a-4), (a-5),
(a-6), (a-7), (a-8), (a-9), (a-10), (a-11), (a-12), (a-13), (a-14),
(a-15), (a-16), (a-17), (a-18), (a-19), (a-20), (a-21), (a-22),
(a-23), (a-24), (a-25), (a-26), (a-28), (a-29), (a-30), (a-31),
(a-32), (a-33), (a-34), (a-35), (a-36), (a-37), (a-38), (a-39),
(a-40), (a-41), (a-42), (a-44), (a-45), (a-46), (a-47), (a-48) or
(a-51); [0083] s is 0, 1, 2, 3 or 4; [0084] R.sup.5 is hydrogen;
halo; hydroxy; amino; nitro; trihaloC.sub.1-6alkyl;
trihaloC.sub.1-6alkyloxy; C.sub.1-6alkyl; C.sub.1-6alkyloxy;
C.sub.1-6alkylcarbonyl; C.sub.1-6alkyloxycarbonyl;
C.sub.1-6alkylsulfonyl; hydroxyC.sub.1-6alkyl; aryloxy;
di(C.sub.1-6alkyl)amino; cyano; thiophenyl; furanyl; furanyl
substituted with hydroxyC.sub.1-6alkyl; benzofuranyl; imidazolyl;
oxazolyl; oxazolyl substituted with aryl and C.sub.1-6alkyl;
C.sub.1-6alkyltriazolyl; tetrazolyl; pyrrolidinyl; pyrrolyl;
morpholinyl; C.sub.1-6alkylmorpholinyl; piperazinyl;
C.sub.1-6alkylpiperazinyl; hydroxyC.sub.1-6alkylpiperazinyl;
C.sub.1-6alkyloxypiperidinyl; pyrazolyl; pyrazolyl substituted with
one or two substituents selected from C.sub.1-6alkyl or
trihaloC.sub.1-6alkyl; pyridinyl; pyridinyl substituted with
C.sub.1-6alkyloxy, aryloxy or aryl; pyrimidinyl; quinolinyl;
indole; phenyl; or phenyl substituted with one or two substituents
independently selected from halo, C.sub.1-6alkyl, C.sub.1-6alkyloxy
or trifluoromethyl; and [0085] R.sup.6 is hydrogen; halo; hydroxy;
amino; nitro; trihaloC.sub.1-6alkyl; trihaloC.sub.1-6alkyloxy;
C.sub.1-6alkyl; C.sub.1-6alkyloxy; C.sub.1-6alkylcarbonyl;
C.sub.1-6alkyloxycarbonyl; C.sub.1-6alkylsulfonyl;
hydroxyC.sub.1-6alkyl; aryloxy; di(C.sub.1-6alkyl)amino; cyano;
pyridinyl; phenyl; or phenyl substituted with one or two
substituents independently selected from halo, C.sub.1-6alkyl,
C.sub.1-6alkyloxy or trifluoromethyl.
[0086] A group of more preferred compounds consists of those
compounds of formula (I) wherein n is 0, 1 or 2; m is 0, 1 or 2;
each Q is
##STR00026##
each X is nitrogen; R.sup.1 is --C(O)NH(OH); R.sup.2 is hydrogen;
-L- is a bivalent radical selected from carbonyl, sulfonyl, or
C.sub.1-6alkanediyl substituted with phenyl;
##STR00027##
is a radical selected from (a-1), (a-20) or (a-43); s is 0 or 1;
and each R.sup.5 is independently selected from hydrogen or
phenyl.
[0087] A group of even more preferred compounds consists of those
compounds of formula (I) wherein n is 0, 1 or 2; m is 1 or 2; each
Q is
##STR00028##
each X is nitrogen; R.sup.1 is --C(O)NH(OH); R.sup.2 is hydrogen;
-L- is a bivalent radical selected from carbonyl or sulfonyl;
##STR00029##
is a radical selected from (a-1) or (a-20); each s is independently
0 or 1; and each R.sup.5 is independently selected from hydrogen or
aryl.
[0088] Most preferred compounds are compounds No. 1, No. 3, No. 5,
No. 4, No. 14, No. 12, No. 7, No. R.sup.8 or No. 9
##STR00030## ##STR00031##
[0089] The compounds of formula (I) and their pharmaceutically
acceptable salts and N-oxides and stereochemically isomeric forms
thereof may be prepared in conventional manner. A general synthesis
route is encompassed as example:
a) Hydroxamic acids of formula (I) wherein R.sup.1 is --C(O)NH(OH),
said compounds being referred to as compounds of formula (I-a), may
be prepared by reacting an intermediate of formula (II) with an
appropriate acid, such as for example, trifluoro acetic acid. Said
reaction is performed in an appropriate solvent, such as, for
example, methanol.
##STR00032##
b) intermediates of formula (II) may be prepared by reacting an
intermediate of formula (III) with an intermediate of formula (IV)
in the presence of appropriate reagents such as
N'-(ethylcarbonimidoyl)-N,N-dimethyl-1,3-propanediamine,
monohydrochloride (EDC) and 1-hydroxy-1H-benzotriazole (HOBT). The
reaction may be performed in a suitable solvent such as a mixture
of dichloromethane and tetrahydrofuran.
##STR00033##
c) intermediates of formula (III) may be prepared by reacting an
intermediate of formula (V) with an appropriate base such as NaOH
in the presence of a suitable solvent such as ethanol.
##STR00034##
[0090] The compounds of formula (I) can also conveniently be
prepared using solid phase synthesis techniques. In general, solid
phase synthesis involves reacting an intermediate in a synthesis
with a polymer support. This polymer-supported intermediate can
then be carried on through a number of synthesis steps. After each
step, filtering the resin and washing it numerous times with
various solvents remove impurities. At each step the resin can be
split up to react with various intermediates in the next step thus
allowing for the synthesis of a large number of compounds. After
the last step in the procedure the resin is treated with a reagent
or process to cleave the resin from the sample. More detailed
explanation of the techniques used in solid phase chemistry is
described in for example "The Combinatorial Index" (B. Bunin,
Academic Press) and Novabiochem's 1999 Catalogue & Peptide
Synthesis Handbook (Novabiochem AG, Switzerland) both incorporated
herein by reference.
[0091] The compounds of formula (I) and some of the intermediates
may have at least one stereogenic centre in their structure. This
stereogenic centre may be present in an R or an S
configuration.
[0092] The compounds of formula (I) as prepared in the hereinabove
described processes are generally racemic mixtures of enantiomers,
which can be separated from one another following art-known
resolution procedures. The racemic compounds of formula (I) may be
converted into the corresponding diastereomeric salt forms by
reaction with a suitable chiral acid. Said diastereomeric salt
forms are subsequently separated, for example, by selective or
fractional crystallization and the enantiomers are liberated there
from by alkali. An alternative manner of separating the
enantiomeric forms of the compounds of formula (I) involves liquid
chromatography using a chiral stationary phase. Said pure
stereochemically isomeric forms may also be derived from the
corresponding pure stereochemically isomeric forms of the
appropriate starting materials, provided that the reaction occurs
stereospecifically. Preferably if a specific stereoisomer is
desired, said compound would be synthesized by stereospecific
methods of preparation. These methods will advantageously employ
enantiomerically pure starting materials.
[0093] The compounds of formula (I), the pharmaceutically
acceptable acid addition salts and stereoisomeric forms thereof
have valuable pharmacological properties in that they have a
histone deacetylase (HDAC) inhibitory effect.
[0094] This invention provides a method for inhibiting the abnormal
growth of cells, including transformed cells, by administering an
effective amount of a compound of the invention. Abnormal growth of
cells refers to cell growth independent of normal regulatory
mechanisms (e.g. loss of contact inhibition). This includes the
inhibition of tumour growth both directly by causing growth arrest,
terminal differentiation and/or apoptosis of cancer cells, and
indirectly, by inhibiting neovascularization of tumours.
[0095] This invention also provides a method for inhibiting tumour
growth by administering an effective amount of a compound of the
present invention, to a subject, e.g. a mammal (and more
particularly a human) in need of such treatment. In particular,
this invention provides a method for inhibiting the growth of
tumours by the administration of an effective amount of the
compounds of the present invention. Examples of tumours which may
be inhibited, but are not limited to, lung cancer (e.g.
adenocarcinoma and including non-small cell lung cancer),
pancreatic cancers (e.g. pancreatic carcinoma such as, for example
exocrine pancreatic carcinoma), colon cancers (e.g. colorectal
carcinomas, such as, for example, colon adenocarcinoma and colon
adenoma), prostate cancer including the advanced disease,
hematopoietic tumours of lymphoid lineage (e.g. acute lymphocytic
leukemia, B-cell lymphoma, Burkitt's lymphoma), myeloid leukemias
(for example, acute myelogenous leukemia (AML)), thyroid follicular
cancer, myelodysplastic syndrome (MDS), tumours of mesenchymal
origin (e.g. fibrosarcomas and rhabdomyosarcomas), melanomas,
teratocarcinomas, neuroblastomas, gliomas, benign tumour of the
skin (e.g. keratoacanthomas), breast carcinoma (e.g. advanced
breast cancer), kidney carcinoma, ovary carcinoma, bladder
carcinoma and epidermal carcinoma.
[0096] The compound according to the invention may be used for
other therapeutic purposes, for example: [0097] a) the
sensitisation of tumours to radiotherapy by administering the
compound according to the invention before, during or after
irradiation of the tumour for treating cancer; [0098] b) treating
arthropathies and osteopathological conditions such as rheumatoid
arthritis, osteoarthritis, juvenile arthritis, gout, polyarthritis,
psoriatic arthritis, ankylosing spondylitis and systemic lupus
erythematosus; [0099] c) inhibiting smooth muscle cell
proliferation including vascular proliferative disorders,
atherosclerosis and restenosis; [0100] d) treating inflammatory
conditions and dermal conditions such as ulcerative colitis,
Crohn's disease, allergic rhinitis, graft vs. host disease,
conjunctivitis, asthma, ARDS, Behcets disease, transplant
rejection, uticaria, allergic dermatitis, alopecia areata,
scleroderma, exanthema, eczema, dermatomyositis, acne, diabetes,
systemic lupus erythematosis, Kawasaki's disease, multiple
sclerosis, emphysema, cystic fibrosis and chronic bronchitis;
[0101] e) treating endometriosis, uterine fibroids, dysfunctional
uterine bleeding and endometrial hyperplasia; [0102] f) treating
ocular vascularisation including vasculopathy affecting retinal and
choroidal vessels; [0103] g) treating a cardiac dysfunction; [0104]
h) inhibiting immunosuppressive conditions such as the treatment of
HIV infections; [0105] i) treating renal dysfunction; [0106] j)
suppressing endocrine disorders; [0107] k) inhibiting dysfunction
of gluconeogenesis; [0108] l) treating a neuropathology for example
Parkinson's disease or a neuropathology that results in a cognitive
disorder, for example, Alzheimer's disease or polyglutamine related
neuronal diseases; [0109] m) inhibiting a neuromuscular pathology,
for example, amylotrophic lateral sclerosis; [0110] n) treating
spinal muscular atrophy; [0111] o) treating other pathologic
conditions amenable to treatment by potentiating expression of a
gene; [0112] p) enhancing gene therapy.
[0113] Hence, the present invention discloses the compounds of
formula (I) for use as a medicine as well as the use of these
compounds of formula (I) for the manufacture of a medicament for
treating one or more of the above mentioned conditions.
[0114] The compounds of formula (I), the pharmaceutically
acceptable acid addition salts and stereoisomeric forms thereof can
have valuable diagnostic properties in that they can be used for
detecting or identifying a HDAC in a biological sample comprising
detecting or measuring the formation of a complex between a
labelled compound and a HDAC.
[0115] The detecting or identifying methods can use compounds that
are labelled with labelling agents such as radioisotopes, enzymes,
fluorescent substances, luminous substances, etc. Examples of the
radioisotopes include .sup.125I, .sup.131I, .sup.3H and .sup.14C.
Enzymes are usually made detectable by conjugation of an
appropriate substrate which, in turn catalyses a detectable
reaction. Examples thereof include, for example,
beta-galactosidase, beta-glucosidase, alkaline phosphatase,
peroxidase and malate dehydrogenase, preferably horseradish
peroxidase. The luminous substances include, for example, luminol,
luminol derivatives, luciferin, aequorin and luciferase.
[0116] Biological samples can be defined as body tissue or body
fluids. Examples of body fluids are cerebrospinal fluid, blood,
plasma, serum, urine, sputum, saliva and the like.
[0117] In view of their useful pharmacological properties, the
subject compounds may be formulated into various pharmaceutical
forms for administration purposes.
[0118] To prepare the pharmaceutical compositions of this
invention, an effective amount of a particular compound, in base or
acid addition salt form, as the active ingredient is combined in
intimate admixture with a pharmaceutically acceptable carrier,
which carrier may take a wide variety of forms depending on the
form of preparation desired for administration. These
pharmaceutical compositions are desirably in unitary dosage form
suitable, preferably, for administration orally, rectally,
percutaneously, or by parenteral injection. For example, in
preparing the compositions in oral dosage form, any of the usual
pharmaceutical media may be employed, such as, for example, water,
glycols, oils, alcohols and the like in the case of oral liquid
preparations such as suspensions, syrups, elixirs and solutions; or
solid carriers such as starches, sugars, kaolin, lubricants,
binders, disintegrating agents and the like in the case of powders,
pills, capsules and tablets.
[0119] Because of their ease in administration, tablets and
capsules represent the most advantageous oral dosage unit form, in
which case solid pharmaceutical carriers are obviously employed.
For parenteral compositions, the carrier will usually comprise
sterile water, at least in large part, though other ingredients, to
aid solubility for example, may be included. Injectable solutions,
for example, may be prepared in which the carrier comprises saline
solution, glucose solution or a mixture of saline and glucose
solution. Injectable suspensions may also be prepared in which case
appropriate liquid carriers, suspending agents and the like may be
employed. In the compositions suitable for percutaneous
administration, the carrier optionally comprises a penetration
enhancing agent and/or a suitable wetting agent, optionally
combined with suitable additives of any nature in minor
proportions, which additives do not cause a significant deleterious
effect to the skin. Said additives may facilitate the
administration to the skin and/or may be helpful for preparing the
desired compositions. These compositions may be administered in
various ways, e.g., as a transdermal patch, as a spot-on or as an
ointment.
[0120] It is especially advantageous to formulate the
aforementioned pharmaceutical compositions in dosage unit form for
ease of administration and uniformity of dosage. Dosage unit form
as used in the specification and claims herein refers to physically
discrete units suitable as unitary dosages, each unit containing a
predetermined quantity of active ingredient, calculated to produce
the desired therapeutic effect, in association with the required
pharmaceutical carrier. Examples of such dosage unit forms are
tablets (including scored or coated tablets), capsules, pills,
powder packets, wafers, injectable solutions or suspensions,
teaspoonfuls, tablespoonfuls and the like, and segregated multiples
thereof.
[0121] Those skilled in the art could easily determine the
effective amount from the test results presented hereinafter. In
general it is contemplated that a therapeutically effective amount
would be from 0.05 mg/kg to 100 mg/kg body weight, and in
particular from 0.05 mg/kg to 10 mg/kg body weight. It may be
appropriate to administer the required dose as two, three, four or
more sub-doses at appropriate intervals throughout the day. Said
sub-doses may be formulated as unit dosage forms, for example,
containing 0.5 to 500 mg, and in particular 10 mg to 500 mg of
active ingredient per unit dosage form.
[0122] As another aspect of the present invention a combination of
a HDAC-inhibitor with another anticancer agent is envisaged,
especially for use as a medicine, more specifically in the
treatment of cancer or related diseases.
[0123] For the treatment of the above conditions, the compounds of
the invention may be advantageously employed in combination with
one or more other medicinal agents, more particularly, with other
anti-cancer agents. Examples of anti-cancer agents are: [0124]
platinum coordination compounds for example cisplatin, carboplatin
or oxalyplatin; [0125] taxane compounds for example paclitaxel or
docetaxel; [0126] topoisomerase I inhibitors such as camptothecin
compounds for example irinotecan or topotecan; [0127] topoisomerase
II inhibitors such as anti-tumour podophyllotoxin derivatives for
example etoposide or teniposide; [0128] anti-tumour vinca alkaloids
for example vinblastine, vincristine or vinorelbine; [0129]
anti-tumour nucleoside derivatives for example 5-fluorouracil,
gemcitabine or capecitabine; [0130] alkylating agents such as
nitrogen mustard or nitrosourea for example cyclophosphamide,
chlorambucil, carmustine or lomustine; [0131] anti-tumour
anthracycline derivatives for example daunorubicin, doxorubicin,
idarubicin or mitoxantrone; [0132] HER2 antibodies for example
trastuzumab; [0133] estrogen receptor antagonists or selective
estrogen receptor modulators for example tamoxifen, toremifene,
droloxifene, faslodex or raloxifene; [0134] aromatase inhibitors
such as exemestane, anastrozole, letrazole and vorozole; [0135]
differentiating agents such as retinoids, vitamin D and retinoic
acid metabolism blocking agents (RAMBA) for example accutane;
[0136] DNA methyl transferase inhibitors for example azacytidine;
[0137] kinase inhibitors for example flavoperidol, imatinib
mesylate or gefitinib; [0138] farnesyltransferase inhibitors; or
[0139] other HDAC inhibitors.
[0140] The term "platinum coordination compound" is used herein to
denote any tumor cell growth inhibiting platinum coordination
compound which provides platinum in the form of an ion.
[0141] The term "taxane compounds" indicates a class of compounds
having the taxane ring system and related to or derived from
extracts from certain species of yew (Taxus) trees.
[0142] The term "topisomerase inhibitors" is used to indicate
enzymes that are capable of altering DNA topology in eukaryotic
cells. They are critical for important cellular functions and cell
proliferation. There are two classes of topoisomerases in
eukaryotic cells, namely type I and type II. Topoisomerase I is a
monomeric enzyme of approximately 100,000 molecular weight. The
enzyme binds to DNA and introduces a transient single-strand break,
unwinds the double helix (or allows it to unwind) and subsequently
reseals the break before dissociating from the DNA strand.
Topisomerase II has a similar mechanism of action which involves
the induction of DNA strand breaks or the formation of free
radicals.
[0143] The term "camptothecin compounds" is used to indicate
compounds that are related to or derived from the parent
camptothecin compound which is a water-insoluble alkaloid derived
from the Chinese tree Camptothecin acuminata and the Indian tree
Nothapodytes foetida.
[0144] The term "podophyllotoxin compounds" is used to indicate
compounds that are related to or derived from the parent
podophyllotoxin, which is extracted from the mandrake plant.
[0145] The term "anti-tumor vinca alkaloids" is used to indicate
compounds that are related to or derived from extracts of the
periwinkle plant (Vinca rosea).
[0146] The term "alkylating agents" encompass a diverse group of
chemicals that have the common feature that they have the capacity
to contribute, under physiological conditions, alkyl groups to
biologically vital macromolecules such as DNA. With most of the
more important agents such as the nitrogen mustards and the
nitrosoureas, the active alkylating moieties are generated in vivo
after complex degradative reactions, some of which are enzymatic.
The most important pharmacological actions of the alkylating agents
are those that disturb the fundamental mechanisms concerned with
cell proliferation in particular DNA synthesis and cell division.
The capacity of alkylating agents to interfere with DNA function
and integrity in rapidly proliferating tissues provides the basis
for their therapeutic applications and for many of their toxic
properties.
[0147] The term "anti-tumour anthracycline derivatives" comprise
antibiotics obtained from the fungus Strep. peuticus var. caesius
and their derivatives, characterised by having a tetracycline ring
structure with an unusual sugar, daunosamine, attached by a
glycosidic linkage.
[0148] Amplification of the human epidermal growth factor receptor
2 protein (HER 2) in primary breast carcinomas has been shown to
correlate with a poor clinical prognosis for certain patients.
Trastuzumab is a highly purified recombinant DNA-derived humanized
monoclonal IgG1 kappa antibody that binds with high affinity and
specificity to the extracellular domain of the HER2 receptor.
[0149] Many breast cancers have estrogen receptors and growth of
these tumors can be stimulated by estrogen. The terms "estrogen
receptor antagonists" and "selective estrogen receptor modulators"
are used to indicate competitive inhibitors of estradiol binding to
the estrogen receptor (ER), Selective estrogen receptor modulators,
when bound to the ER, induces a change in the three-dimensional
shape of the receptor, inhibiting its binding to the estrogen
responsive element (ERE) on DNA.
[0150] In postmenopausal women, the principal source of circulating
estrogen is from conversion of adrenal and ovarian androgens
(androstenedione and testosterone) to estrogens (estrone and
estradiol) by the aromatase enzyme in peripheral tissues. Estrogen
deprivation through aromatase inhibition or inactivation is an
effective and selective treatment for some postmenopausal patients
with hormone-dependent breast cancer.
[0151] The term "antiestrogen agent" is used herein to include not
only estrogen receptor antagonists and selective estrogen receptor
modulators but also aromatase inhibitors as discussed above.
[0152] The term "differentiating agents" encompass compounds that
can, in various ways, inhibit cell proliferation and induce
differentiation. Vitamin D and retinoids are known to play a major
role in regulating growth and differentiation of a wide variety of
normal and malignant cell types. Retinoic acid metabolism blocking
agents (RAMBA's) increase the levels of endogenous retinoic acids
by inhibiting the cytochrome P450-mediated catabolism of retinoic
acids.
[0153] DNA methylation changes are among the most common
abnormalities in human neoplasia. Hypermethylation within the
promoters of selected genes is usually associated with inactivation
of the involved genes. The term "DNA methyl transferase inhibitors"
is used to indicate compounds that act through pharmacological
inhibition of DNA methyl transferase and reactivation of tumour
suppressor gene expression.
[0154] The term "kinase inhibitors" comprises potent inhibitors of
kinases that are involved in cell cycle progression and programmed
cell death (apoptosis).
[0155] The term "farnesyltransferase inhibitors" is used to
indicate compounds that were designed to prevent farnesylation of
Ras and other intracellular proteins. They have been shown to have
effect on malignant cell proliferation and survival.
[0156] The term "other HDAC inhibitors" comprises but is not
limited to: [0157] short-chain fatty acids for example butyrate,
4-phenylbutyrate or valproic acid; [0158] hydroxamic acids for
example suberoylanilide hydroxamic acid (SAHA), biaryl hydroxamate
A-161906, bicyclic aryl-N-hydroxycarboxamides, pyroxamide,
CCG-1521, PXD-101, sulfonamide hydroxamic acid, LAQ-824,
trichostatin A (TSA), oxamflatin, scriptaid, m-carboxy cinnamic
acid bishydroxamic acid, or trapoxin-hydroxamic acid analogue;
[0159] cyclic tetrapeptides for example trapoxin, apidicin or
depsipeptide; [0160] benzamides for example MS-275 or CI-994, or
[0161] depudecin.
[0162] For the treatment of cancer the compounds according to the
present invention may be administered to a patient as described
above, in conjunction with irradiation. Irradiation means ionising
radiation and in particular gamma radiation, especially that
emitted by linear accelerators or by radionuclides that are in
common use today. The irradiation of the tumour by radionuclides
can be external or internal.
[0163] The present invention also relates to a combination
according to the invention of an anti-cancer agent and a HDAC
inhibitor according to the invention.
[0164] The present invention also relates to a combination
according to the invention for use in medical therapy for example
for inhibiting the growth of tumour cells.
[0165] The present invention also relates to a combinations
according to the invention for inhibiting the growth of tumour
cells.
[0166] The present invention also relates to a method of inhibiting
the growth of tumour cells in a human subject which comprises
administering to the subject an effective amount of a combination
according to the invention.
[0167] This invention further provides a method for inhibiting the
abnormal growth of cells, including transformed cells, by
administering an effective amount of a combination according to the
invention.
[0168] The other medicinal agent and HDAC inhibitor may be
administered simultaneously (e.g. in separate or unitary
compositions) or sequentially in either order. In the latter case,
the two compounds will be administered within a period and in an
amount and manner that is sufficient to ensure that an advantageous
or synergistic effect is achieved. It will be appreciated that the
preferred method and order of administration and the respective
dosage amounts and regimes for each component of the combination
will depend on the particular other medicinal agent and HDAC
inhibitor being administered, their route of administration, the
particular tumour being treated and the particular host being
treated. The optimum method and order of administration and the
dosage amounts and regime can be readily determined by those
skilled in the art using conventional methods and in view of the
information set out herein.
[0169] The platinum coordination compound is advantageously
administered in a dosage of 1 to 500 mg per square meter
(mg/m.sup.2) of body surface area, for example 50 to 400
mg/m.sup.2, particularly for cisplatin in a dosage of about 75
mg/m.sup.2 and for carboplatin in about 300 mg/m.sup.2 per course
of treatment.
[0170] The taxane compound is advantageously administered in a
dosage of 50 to 400 mg per square meter (mg/m.sup.2) of body
surface area, for example 75 to 250 mg/m.sup.2, particularly for
paclitaxel in a dosage of about 175 to 250 mg/m.sup.2 and for
docetaxel in about 75 to 150 mg/m.sup.2 per course of
treatment.
[0171] The camptothecin compound is advantageously administered in
a dosage of 0.1 to 400 mg per square meter (mg/m.sup.2) of body
surface area, for example 1 to 300 mg/m.sup.2, particularly for
irinotecan in a dosage of about 100 to 350 mg/m.sup.2 and for
topotecan in about 1 to 2 mg/m.sup.2 per course of treatment.
[0172] The anti-tumor podophyllotoxin derivative is advantageously
administered in a dosage of 30 to 300 mg per square meter
(mg/m.sup.2) of body surface area, for example 50 to 250
mg/m.sup.2, particularly for etoposide in a dosage of about 35 to
100 mg/m.sup.2 and for teniposide in about 50 to 250 mg/m.sup.2 per
course of treatment.
[0173] The anti-tumor vinca alkaloid is advantageously administered
in a dosage of 2 to 30 mg per square meter (mg/m.sup.2) of body
surface area, particularly for vinblastine in a dosage of about 3
to 12 mg/m.sup.2, for vincristine in a dosage of about 1 to 2
mg/m.sup.2, and for vinorelbine in dosage of about 10 to 30
mg/m.sup.2 per course of treatment.
[0174] The anti-tumor nucleoside derivative is advantageously
administered in a dosage of 200 to 2500 mg per square meter
(mg/m.sup.2) of body surface area, for example 700 to 1500
mg/m.sup.2, particularly for 5-FU in a dosage of 200 to 500
mg/m.sup.2, for gemcitabine in a dosage of about 800 to 1200
mg/m.sup.2 and for capecitabine in about 1000 to 2500 mg/m.sup.2
per course of treatment.
[0175] The alkylating agents such as nitrogen mustard or
nitrosourea is advantageously administered in a dosage of 100 to
500 mg per square meter (mg/m.sup.2) of body surface area, for
example 120 to 200 mg/m.sup.2, particularly for cyclophosphamide in
a dosage of about 100 to 500 mg/m.sup.2, for chlorambucil in a
dosage of about 0.1 to 0.2 mg/kg, for carmustine in a dosage of
about 150 to 200 mg/m.sup.2, and for lomustine in a dosage of about
100 to 150 mg/m.sup.2 per course of treatment.
[0176] The anti-tumor anthracycline derivative is advantageously
administered in a dosage of 10 to 75 mg per square meter
(mg/m.sup.2) of body surface area, for example 15 to 60 mg/m.sup.2,
particularly for doxorubicin in a dosage of about 40 to 75
mg/m.sup.2, for daunorubicin in a dosage of about 25 to 45
mg/m.sup.2, and for idarubicin in a dosage of about 10 to 15
mg/m.sup.2 per course of treatment.
[0177] Trastuzumab is advantageously administered in a dosage of 1
to 5 mg per square meter (mg/m.sup.2) of body surface area,
particularly 2 to 4 mg/m.sup.2 per course of treatment.
[0178] The antiestrogen agent is advantageously administered in a
dosage of about 1 to 100 mg daily depending on the particular agent
and the condition being treated. Tamoxifen is advantageously
administered orally in a dosage of 5 to 50 mg, preferably 10 to 20
mg twice a day, continuing the therapy for sufficient time to
achieve and maintain a therapeutic effect. Toremifene is
advantageously administered orally in a dosage of about 60 mg once
a day, continuing the therapy for sufficient time to achieve and
maintain a therapeutic effect. Anastrozole is advantageously
administered orally in a dosage of about 1 mg once a day.
Droloxifene is advantageously administered orally in a dosage of
about 20-100 mg once a day. Raloxifene is advantageously
administered orally in a dosage of about 60 mg once a day.
Exemestane is advantageously administered orally in a dosage of
about 25 mg once a day.
[0179] These dosages may be administered for example once, twice or
more per course of treatment, which may be repeated for example
every 7, 14, 21 or 28 days.
[0180] In view of their useful pharmacological properties, the
components of the combinations according to the invention, i.e. the
other medicinal agent and the HDAC inhibitor may be formulated into
various pharmaceutical forms for administration purposes. The
components may be formulated separately in individual
pharmaceutical compositions or in a unitary pharmaceutical
composition containing both components.
[0181] The present invention therefore also relates to a
pharmaceutical composition comprising the other medicinal agent and
the HDAC inhibitor together with one or more pharmaceutical
carriers.
[0182] The present invention also relates to a combination
according to the invention in the form of a pharmaceutical
composition comprising an anti-cancer agent and a HDAC inhibitor
according to the invention together with one or more pharmaceutical
carriers.
[0183] The present invention further relates to the use of a
combination according to the invention in the manufacture of a
pharmaceutical composition for inhibiting the growth of tumour
cells.
[0184] The present invention further relates to a product
containing as first active ingredient a HDAC inhibitor according to
the invention and as second active ingredient an anticancer agent,
as a combined preparation for simultaneous, separate or sequential
use in the treatment of patients suffering from cancer.
EXPERIMENTAL PART
[0185] The following examples are provided for purposes of
illustration,
[0186] Hereinafter "DCM" means dichloromethane, "DMA" means
dimethylacetamide, "DMF" means dimethylformamide, "EtOAc" means
ethyl acetate, "iPrOH" means isopropyl, "MeOH" means methanol,
"EtOAc" means ethyl acetate, "EtOH" means ethanol, "TEA" means
triethylamine, "TFA" means trifluoroacetic acid and "THF" means
tetrahydrofuran.
A. Preparation of the Intermediates
Example A1
a) Preparation of
##STR00035##
[0188] A solution of 2-naphthalenesulfonyl chloride (0.0094 mol) in
DCM (10 ml) was added at 5.degree. C. to a mixture of
2-(4-piperidinyl)-1H-isoindole-1,3(2H)-dione (0.0078 mol) and TEA
(0.0109 mol) in DCM (20 ml) under N.sub.2 flow. The mixture was
kept at room temperature for a week-end. Potassium carbonate 10%
was added. The mixture was extracted with DCM. The organic layer
was separated, dried (MgSO.sub.4), filtered, and the solvent was
evaporated till dryness, yielding 3.3 g (100%) of intermediate
1.
b) Preparation of
##STR00036##
[0190] A mixture of intermediate 1 (0.0078 mol) in hydrazine
monohydrate (3.5 ml) and EtOH (35 ml) was stirred and refluxed for
1 hour. Satured sodium chloride was added. The mixture was
extracted with DCM. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated till
dryness, yielding 2 g (92%) of intermediate 2, melting point
135.degree. C.
c) Preparation of
##STR00037##
[0192] A mixture of intermediate 2 (0.0036 mol),
6-chloro-3-pyridinecarboxylic acid, ethyl ester (0.0043 mol) and
sodium carbonate (0.0054 ml) in DMA (10 ml) was stirred at
130.degree. C. for 18 hours, poured out into water and extracted
with DCM. The organic layer was separated, dried (MgSO.sub.4),
filtered, and the solvent was evaporated till dryness. The residue
(2.5 g) was purified by column chromatography over silica gel
(15-40 .mu.m) (eluent: DCM/MeOH 99.5/0.5). The pure fractions were
collected and the solvent was evaporated. The residue (0.68 g, 43%)
was crystallized from diethyl ether. The precipitate was filtered
off and dried, yielding 0.477 g (30%) of intermediate 3, melting
point 215.degree. C.
Example A2
a) Preparation of
##STR00038##
[0194] TEA (0.0112 mol) then a solution of
[1,1'-biphenyl]-4-sulfonyl chloride (0.0112 mol) in DCM (5 ml) were
added at 5.degree. C. to a mixture of
1,4-dioxa-8-azaspiro[4.6]undecane (0.01 mol) in DCM (10 ml) under
N.sub.2 flow. The mixture was stirred at room temperature for 18
hours. Potassium carbonate 10% was added. The mixture was extracted
with DCM. The organic layer was separated, dried (MgSO.sub.4),
filtered, and the solvent was evaporated till dryness, yielding 5.1
g (>100%) of intermediate 4.
b) Preparation of
##STR00039##
[0196] A mixture of intermediate 4 (0.01 mol) in HCl 3N (40 ml) and
MeOH (20 ml) was stirred and refluxed, then cooled, poured out on
ice, basified with NH.sub.4OH conc. and extracted with DCM. The
organic layer was separated, dried (MgSO.sub.4), filtered, and the
solvent was evaporated till dryness, yielding 3.4 g (100%) of
intermediate 5.
c) Preparation of
##STR00040##
[0198] Sodium hydroborate (0.011 mol) was added portionwise at
5.degree. C. to a mixture of intermediate 5 (0.01 mol) in MeOH (35
ml) under N.sub.2 flow. The mixture was kept at room temperature
for 1 hour, poured out into water and extracted with DCM. The
organic layer was separated dried (MgSO.sub.4), filtered, and the
solvent was evaporated till dryness, yielding 3.2 g (97%) of
intermediate 6.
d) Preparation of
##STR00041##
[0200] Diazenedicarboxylic acid, bis(1-methylethyl) ester (0.0126
mol) was added dropwise to a mixture of intermediate 6 (0.0096
mol), 1H-isoindole-1,3(2H)-dione (0.0126 mol) and
triphenyl-phosphine (0.0126 mol) in THF (35 ml) under N.sub.2 flow.
The mixture was kept at room temperature for 18 hours. Potassium
carbonate 10% was added. The mixture was extracted with DCM. The
organic layer was separated, dried (MgSO.sub.4), filtered, and the
solvent was evaporated till dryness. The residue (13.1 g) was
purified by column chromatography over silica gel (15-40 .mu.m)
(eluent: DCM/EtOAc 99/1). The pure fractions were collected and the
solvent was evaporated, yielding 2.9 g (66%) of intermediate 7.
e) Preparation of
##STR00042##
[0202] A mixture of intermediate 7 (0.0063 mol) in hydrazine
monohydrobromide (2.9 ml) and EtOH (30 ml) was stirred and refluxed
for 1 hour, then cooled. Satured NaCl was added. The mixture was
extracted with DCM. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated till
dryness. The residue (2.5 g) was crystallized from
acetonitrile/diethyl ether. The precipitate was filtered off and
dried, yielding 0.89 g (89%) of intermediate 8, melting point
141.degree. C.
Preparation of
##STR00043##
[0204] Intermediate 10 was handled analogously as described in
example A2 (c, d, e) to give 0.157 g (52%) of intermediate 19,
melting point 123.degree. C.
Example A3
a) Preparation of
##STR00044##
[0206] TEA (0.0112 mol) then a solution of 2-naphthalenesulfonyl
chloride (0.0112 mol) in DCM (5 ml) were added at 5.degree. C. to a
mixture of 1,4-dioxa-8-azaspiro[4.6]undecane (0.01 mol) in DCM
(101) under N.sub.2 flow. The mixture was stirred at room
temperature for 18 hours. Potassium carbonate 10% was added. The
mixture was extracted with DCM. The organic layer was separated,
dried (MgSO.sub.4), filtered, and the solvent was evaporated till
dryness, yielding 3.9 g (>100%) of intermediate 9.
b) Preparation of
##STR00045##
[0208] A mixture of intermediate 9 (0.01 mol) in hydrochloric acid
(35 ml) and MeOH (35 ml) was stirred and refluxed for 30 minutes,
poured out on ice, basified with NH.sub.4OH and extracted with DCM.
The organic layer was separated, dried (MgSO.sub.4), filtered, and
the solvent was evaporated till dryness, yielding 3.4 g (>100%)
of intermediate 10.
c) Preparation of
##STR00046##
[0210] Tetraisopropanolatotitanium (0.012 mol) was added at room
temperature to a mixture of intermediate 10 (0.01 mol) and
benzenemethanamine (0.011 mol) in EtOH (40 ml). The mixture was
stirred for 18 hours. Sodium hydroborate (0.011 mol) was added
portionwise. The mixture was stirred at room temperature for 1 hour
and 30 minutes. Potassium carbonate 10% was added. The mixture was
extracted with DCM. The salts were filtered and washed with DCM.
The organic layer was separated, dried (MgSO.sub.4), filtered, and
the solvent was evaporated till dryness, yielding 2.7 g (70%) of
intermediate 11.
d) Preparation of
##STR00047##
[0212] A mixture of intermediate 11 (0.0068 mol) and Pd/C 10% (0.5
g) in acetic acid (3 ml) and MeOH (30 ml) was hydrogenated at
50.degree. C. for 48 hours under a 3 bar pressure, then filtered
and washed with DCM. The filtrate was evaporated, yielding: 2.55 g
(>100%) of intermediate 12.
Example A4
a) Preparation of
##STR00048##
[0214] Sodium hydride 60% (0.008 mol) was added portionwise at
0.degree. C. to a mixture of 4-(aminomethyl)-1-piperidinecarboxylic
acid, 1,1-dimethylethyl ester (0.004 mol) in THF (20 ml) under
N.sub.2 flow. The mixture was stirred at 0.degree. C. for 1 hour. A
solution of 2-(methylsulfonyl)-5-pyrimidinecarboxylic acid, ethyl
ester (0.0052 mol) in THF (10 ml) was added dropwise at 0.degree.
C. The mixture was brought to room temperature, stirred for 2
hours, poured out into ice water and extracted with EtOAc. The
organic layer was separated, dried (MgSO.sub.4), filtered, and the
solvent was evaporated. The residue (1.5 g) was purified by column
chromatography over silica gel (15-40 .mu.m) (eluent:
DCM/MeOH/NH.sub.4OH 98/2/0.1). The pure fractions were collected
and the solvent was evaporated. The residue (0.5 g, 35%) was
crystallized from DIPE. The precipitate was filtered off and dried,
yielding 0.28 g of intermediate 13, melting point 110.degree.
C.
b) Preparation of
##STR00049##
[0216] A mixture of intermediate 13 (0.016 mol) in hydrochloric
acid 3N (60 ml) and THF (15 ml) was stirred at 80.degree. C. for 6
hours, poured out into ice water, basified with NH.sub.4OH and
extracted with DCM. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated, yielding
1.4 g (33%) of intermediate 14.
Example A5
a) Preparation of
##STR00050##
[0218] A solution of 1-hydroxy-1H-benzotriazole (0.011 mol) in DCM
(5 ml) was added at 5.degree. C. to a mixture of
(3-piperidinylmethyl)-carbamic acid, 1,1-dimethylethyl ester (0.01
mol) and TEA (0.014 mol) in DCM (5 ml) under N.sub.2 flow. The
mixture was stiffed at room temperature for 18 hours. Water was
added. The mixture was extracted with DCM. The organic layer was
separated, dried (MgSO.sub.4), filtered, and the solvent was
evaporated till dryness, yielding 4 g (100%) of intermediate
15.
b) Preparation of
##STR00051##
[0220] A mixture of intermediate 15 (0.01 mol) in HCl/2-propanol
(50 ml) was stirred at 50.degree. C. for 15 minutes, basified with
NH.sub.4OH concentrated and the solvent was evaporated till
dryness. The residue was taken up in DCM and filtered. The filtrate
was dried (MgSO.sub.4), filtered and the solvent was evaporated
till dryness, yielding 0.53 g (18%) of intermediate 16.
Example A6
a) Preparation of
##STR00052##
[0222] Sodium hydride 60% (0.014 mol) was added portionwise at
0.degree. C. to a mixture of (2-morpholinylmethyl)-carbamic acid,
1,1-dimethylethyl ester (0.0092 mol) in THF (30 ml) under N.sub.2
flow. The mixture was stirred at 0.degree. C. for 1 hour. A
solution of 2-naphthalenesulfonyl chloride (0.0111 mol) in THF (30
ml) was added. The mixture was brought to room temperature
overnight, poured out into ice water and extracted with EtOAc. The
organic layer was separated, dried (MgSO.sub.4), filtered, and the
solvent was evaporated. The residue (4.9 g) was purified by column
chromatography over silica gel (15-40 .mu.m) (eluent:
cyclohexane/EtOAc 70/30). The pure fractions were collected and the
solvent was evaporated, yielding 2.15 g (58%) of intermediate
17.
b) Preparation of
##STR00053##
[0224] A mixture of intermediate 17 (0.0052 mol) in HCl 6N (25 ml)
was stirred at 80.degree. C. for 12 hours, poured out on ice,
basified with sodium hydroxide and extracted with DCM. The organic
layer was separated, dried (MgSO.sub.4), filtered, and the solvent
was evaporated, yielding 1 g (63%) of intermediate 18.
B. Preparation of the Final Compounds
Example B1
a) Preparation of
##STR00054##
[0226] A mixture of intermediate 3 (0.0014 mol) and sodium
hydroxide (0.0028 mol) in EtOH (10 ml) was stirred and refluxed for
2 hours, then cooled. The precipitate was filtered, washed with
EtOH, then with diethyl ether and dried, yielding 0.5 g (82%) of
intermediate 20.
b) Preparation of
##STR00055##
[0228] N'-(ethylcarbonimidoyl)-N,N-dimethyl-1,3-propanediamine,
monohydrochloride (0.0013 mol) was added to a mixture of
intermediate 20 (0.0011 mol),
O-(tetrahydro-2H-pyran-2-yl)-hydroxylamine (0.0013 mol) and
1-hydroxy-1H-benzotriazole (0.0013 mol) in DCM/THF (10 ml) under
N.sub.2 flow. The mixture was stirred at room temperature
overnight. Potassium carbonate 10% was added. The mixture was
extracted with DCM. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated till
dryness. The residue (0.95 g) was purified by column chromatography
over silica gel (15-40 .mu.m) (eluent: DCM/MeOH/NH.sub.4OH
97/3/0.2). The pure fractions were collected and the solvent was
evaporated. The residue (0.48 g, 82%) was crystallized from
acetonitrile/diethyl ether. The precipitate was filtered off and
dried, yielding 0.455 g (77%) of intermediate 21, melting point
129.degree. C.
c) Preparation of
##STR00056##
[0230] Trifluoroacetic acid (0.5 ml) was added to a mixture of
intermediate 21 (0.0007 mol) in MeOH (5 ml). The mixture was
stirred at room temperature for 18 hours. Trifluoroacetic acid (0.5
ml) was added. The mixture was stirred at room temperature for 18
hours. The solvent was evaporated till dryness. The residue was
crystallized from MeOH/DCM/diethyl ether. The precipitate was
filtered off and dried, yielding 0.195 g (48%) of compound 1. 0.79
C.sub.2HF.sub.3O.sub.2, melting point 160.degree. C.
Example B2
Preparation of
##STR00057##
[0232] A mixture of intermediate 8 (0.0031 mol),
6-chloro-3-pyridinecarboxylic acid, ethyl ester (0.0037 mol) and
sodium carbonate (0.0046 mol) in DMA (10 ml) was stirred at
130.degree. C. for 18 hours. Water was added. The mixture was
extracted several times with EtOAc. The organic layer was
separated, dried (MgSO.sub.4), filtered, and the solvent was
evaporated till dryness. The residue (2.1 g) was purified by column
chromatography over silica gel (15-40 .mu.m) (eluent: DCM/MeOH
99/1). The pure fractions were collected and the solvent was
evaporated. The residue (0.414 g, 28%) was crystallized from
diethyl ether. The precipitate was filtered off and dried, yielding
0.294 g (20%) of intermediate 22, melting point 176.degree. C.
[0233] Intermediate 22 was handled analogously as described in
example [B1] to give 0.084 g (61%) of compound 2. 1.2 H.sub.2O.
0.71 C.sub.2HF.sub.3O.sub.2 (1:1), melting point 115.degree. C.
##STR00058##
Example B3
Preparation of
##STR00059##
[0235] Sodium hydride 60% in oil (0.0045 mol) was added at
5.degree. C. to a mixture of intermediate 19 (0.003 mol) in THF (20
ml) under N.sub.2 flow. The mixture was kept for 1 hour. A solution
of 2-(methylsulfonyl)-5-pyrimidinecarboxylic acid, ethyl ester
(0.0039 mol) in THF (10 ml) was added. The mixture was stirred at
5.degree. C. for 2 hours. Water was added. The mixture was
extracted twice with DCM. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated till
dryness. The residue (1.5 g) was purified by column chromatography
over silica gel (15-40 .mu.m) (eluent: DCM/MeOH 99/1). The pure
fractions were collected and the solvent was evaporated. The
residue (0.47 g, 34%) was crystallized from diethyl ether. The
precipitate was filtered off and dried, yielding 0.224 g (16%) of
intermediate 23, melting point 186.degree. C.
[0236] Intermediate 23 was handled analogously as described in
example [B1] to give 0.032 g (26%) of compound 3.0.22
C.sub.2HF.sub.3O.sub.2, melting point 140.degree. C.
##STR00060##
Example B4
Preparation of
##STR00061##
[0238] Sodium hydride (0.0038 mol) was added at 5.degree. C. to a
mixture of intermediate 8 (0.0025 mol) in THF (20 ml) under N.sub.2
flow. The mixture was kept for 1 hour. A solution of
2-(methylsulfonyl)-5-pyrimidinecarboxylic acid, ethyl ester (0.0033
mol) in THF (10 ml) was added. The mixture was stirred at 5.degree.
C. for 18 hours. Water was added. The mixture was extracted with
DCM. The organic layer was separated, dried (MgSO.sub.4), filtered,
and the solvent was evaporated till dryness. The residue (1.1 g)
was purified by column chromatography over silica gel (15-35 .mu.m)
(eluent: cyclohexane/EtOAc 70/30). The pure fractions were
collected and the solvent was evaporated. The residue (0.18 g, 15%)
was crystallized from diethyl ether. The precipitate was filtered
off and dried, yielding 0.141 g (12%) of intermediate 24, melting
point 151.degree. C.
[0239] Intermediate 24 was handled analogously as described in
example [B I] to give 0.04 g (57%) of compound 4.
C.sub.2HF.sub.3O.sub.2, melting point 227.degree. C.
##STR00062##
Example B5
Preparation of
##STR00063##
[0241] Sodium hydride 60% in oil (0.0045 mol) was added at
5.degree. C. to a mixture of intermediate 2 (0.003 mol) in THF (15
ml) under N.sub.2 flow. The mixture was kept for 1 hour. A solution
of 2-(methylsulfonyl)-5-pyrimidinecarboxylic acid, ethyl ester
(0.0039 mol) in THF (10 ml) was added. The mixture was stirred at
5.degree. C. for 2 hours. Water was added. The mixture was
extracted twice with DCM. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated till
dryness. The residue (1.4 g) was purified by column chromatography
over silica gel (15-40 .mu.m) (eluent: DCM/MeOH 99/1). The pure
fractions were collected and the solvent was evaporated. The
residue (0.49 g, 37%) was crystallized from acetonitrile. The
precipitate was filtered, washed with diethyl ether and dried,
yielding 0.172 g (13%) of intermediate 25, melting point
226.degree. C.
[0242] Intermediate 25 was handled analogously as described in
example [B1] to give 0.064 g (49%) of compound 5 .0.17
C.sub.2HF.sub.3O.sub.2, melting point 256.degree. C.
##STR00064##
Example B6
Preparation of
##STR00065##
[0244] A mixture of intermediate 12 (0.0052 mol),
6-chloro-3-pyridinecarboxylic acid, ethyl ester (0.0062 mol) and
sodium carbonate (0.0078 mol) in DMA (20 ml) was stirred at
130.degree. C. for 18 hours. Water was added. The mixture was
extracted with EtOAc. The organic layer was separated, dried
(MgSO.sub.4), filtered, and the solvent was evaporated till
dryness. The residue (2.6 g) was purified by column chromatography
over silica gel 915-40 .mu.m) (eluent: DCM/MeOH 99/1). The pure
fractions were collected and the solvent was evaporated, yielding
0.64 g (27%) of intermediate 26, melting point 146.degree. C.
Intermediate 26 was handled analogously as described in example
[131] to give 0.263 g (67%) of compound 6 H.sub.2O (1:1). 0.73
C.sub.2HF.sub.3O.sub.2, melting point 115.degree. C.
##STR00066##
Example B7
b) Preparation of
##STR00067##
[0246] A solution of 2-naphthalenesulfonyl chloride (0.0006 mol) in
DCM (2 ml) was added dropwise at 0.degree. C. to a mixture of
intermediate 14 (0.0005 mol) and TEA (0.0008 mol) in DCM (3 ml).
The mixture was stirred at room temperature for 12 hours, poured
out into water and extracted with EtOAc. The organic layer was
separated, dried (MgSO.sub.4), filtered, and the solvent was
evaporated. The residue (0.33 g) was purified by column
chromatography over silica gel (10 .mu.m) (eluent: DCM 100). The
pure fractions were collected and the solvent was evaporated,
yielding 0.21 g (80%) of intermediate 27. Intermediate 27 was
handled analogously as described in example [B1] to give 0.043 g
(33%) of compound 7, melting point 240.degree. C.
##STR00068##
Example B8
Preparation of
##STR00069##
[0248] Sodium hydride 60% in oil (0.0023 mol) was added portionwise
at 5.degree. C. to a mixture of intermediate 16 (0.0017 mol) in THF
(5 ml) under N.sub.2 flow. The mixture was stirred for 30 minutes.
A solution of 2-(methylsulfonyl)-5-pyrimidinecarboxylic acid, ethyl
ester (0.0021 mol) in THF (2 ml) was added. The mixture was stirred
at room temperature for 18 hours. Potassium carbonate 10% was
added. The mixture was extracted with DCM. The organic layer was
separated, dried (MgSO.sub.4), filtered, and the solvent was
evaporated till dryness. The residue (0.72 g) was purified by
column chromatography over silica gel (15-40 .mu.m) (eluent:
DCM/MeOH 99/1). The pure fractions were collected and the solvent
was evaporated, yielding 0.3 g (39%) of intermediate 28.
Intermediate 28 was handled analogously as described in example
[B1] to give 0.119 g (75%) of compound 8, melting point 137.degree.
C.
##STR00070##
Example 9
Preparation of
##STR00071##
[0250] A mixture of intermediate 18 (0.0019 mol),
2-(methylsulfonyl)-5-pyrimidinecarboxylic acid, ethyl ester (0.0025
mol) and potassium carbonate (0.0039 mol) in acetonitrile (15 ml)
was stirred at room temperature for 12 hours, poured out into ice
water and extracted with EtOAc. The organic layer was washed with
water, dried (MgSO.sub.4), filtered, and the solvent was
evaporated. The residue (1 g) was purified by column chromatography
over silica gel (15-40 .mu.m) (eluent: DCM/EtOAc 80/20). The pure
fractions were collected and the solvent was evaporated. The
residue (0.48 g, 89%) was crystallized from CH.sub.3CN/diethyl
ether. The precipitate was filtered off and dried, yielding 0.2 g
of intermediate 29, melting point 168.degree. C.
[0251] Intermediate 29 was handled analogously as described in
example [B1] to give 0.08 g (73%) of compound 9, melting point
226.degree. C.
##STR00072##
[0252] Table F-1 lists the compounds that were prepared according
to one of the above Examples. The following abbreviations were used
in the tables: .C.sub.2HF.sub.3O.sub.2 stands for the
trifluoroacetate salt.
TABLE-US-00001 TABLE F-1 ##STR00073## .cndot.0.79
C.sub.2HF.sub.3O.sub.2; Co. No. 1; Ex. [B1]; mp. 160.degree. C.
##STR00074## .cndot.0.83 C.sub.2HF.sub.3O.sub.2; Co. No. 10; Ex.
[B1]; mp. 182.degree. C. ##STR00075## 0.84 C.sub.2HF.sub.3O.sub.2;
Co. No. 11; Ex. [B1]; mp. 188.degree. C. ##STR00076## .cndot.1.2
H.sub.2O .cndot.0.71 C.sub.2HF.sub.3O.sub.2; Co. No. 2; Ex. [B2];
mp. 115.degree. C. ##STR00077## .cndot.2 H.sub.2O .cndot.0.53
C.sub.2HF.sub.3O.sub.2; Co. No. 12; Ex. [B2]; mp. 147.degree. C.
##STR00078## Co. No. 13; Ex. [B2]; mp. 213.degree. C. ##STR00079##
.cndot.0.22 C.sub.2HF.sub.3O.sub.2; Co. No. 3; Ex. [B3]; mp.
140.degree. C. ##STR00080## Co. No. 14; Ex. [B3]; mp. 250.degree.
C. ##STR00081## .cndot.C.sub.2HF.sub.3O.sub.2; Co. No. 4; Ex. [B4];
mp. 227.degree. C. ##STR00082## .cndot.0.17 C.sub.2HF.sub.3O.sub.2;
Co. No. 5; Ex. [B5]; mp. 256.degree. C. ##STR00083##
.cndot.H.sub.2O .cndot.0.73 C.sub.2HF.sub.3O.sub.2; Co. No. 6; Ex.
[B6]; mp. 146.degree. C. ##STR00084## .cndot.2.27
C.sub.2HF.sub.3O.sub.2; Co. No. 15; Ex. [B6]; mp. 192.degree. C.
##STR00085## Co. No. 7; Ex. [B7]; mp. 240.degree. C. ##STR00086##
Co. No. 8; Ex. [B8]; mp. 137.degree. C. ##STR00087## Co. No. 9; Ex.
[B9]; mp. 226.degree. C.
C. Pharmacological Example
[0253] The in vitro assay for inhibition of histone deacetylase
(see example C.1) measures the inhibition of HDAC enzymatic
activity obtained with the compounds of formula (I).
[0254] Cellular activity of the compounds of formula (I) was
determined on A2780 tumour cells using a colorimetric assay for
cell toxicity or survival (Mosmann Tim, Journal of Immunological
Methods 65: 55-63, 1983)(see example C.2).
[0255] Kinetic solubility in aqueous media measures the ability of
a compound to stay in aqueous solution upon dilution (see example
C.3).
[0256] DMSO-stock solutions are diluted with a single aqueous
buffer solvent in 3 consecutive steps. For every dilution turbidity
is measured with a nephelometer.
[0257] Metabolism of drugs means that a lipid-soluble xenobiotic or
endobiotic compound is enzymatically transformed into (a) polar,
water-soluble, and excretable metabolite(s). The major organ for
drug metabolism is the liver. The metabolic products are often less
active than the parent drug or inactive. However, some metabolites
may have enhanced activity or toxic effects. Thus drug metabolism
may include both "detoxication" and "toxication" processes. One of
the major enzyme systems that determine the organism's capability
of dealing with drugs and chemicals is represented by the
cytochrome P450 monooxygenases, which are NADPH dependent enzymes.
Metabolic stability of compounds can be determined in vitro with
the use of subcellular human tissue (see example C.4). Here
metabolic stability of the compounds is expressed as % of drug
metabolised after 15 minutes incubation of these compounds with
microsomes. Quantitation of the compounds was determined by LC-MS
analysis.
[0258] The tumour suppressor p53 transcriptionally activates a
number of genes including the WAF1/CIP1 gene in response to DNA
damage. The 21 kDa product of the WAF1 gene is found in a complex
involving cyclins, cyclin dependent kinases (CDKs), and
proliferating cell nuclear antigen (PCNA) in normal cells but not
transformed cells and appears to be a universal inhibitor of CDK
activity. One consequence of p21WAF1 binding to and inhibiting-CDKs
is to prevent CDK-dependent phosphorylation and subsequent
inactivation of the Rb protein, which is essential for cell cycle
progression. Induction of p21WAF1 in response to cellular contact
with a HDAC inhibitor is therefore a potent and specific indicator
of inhibition of cell cycle progression at both the G1 and 62
checkpoints.
[0259] The capacity of the compounds to induce p21WAF1 was measured
with the p21WAFT enzyme linked immunosorbent assay (WAF1 ELISA of
Oncogene). The p21WAF1 assay is a "sandwich" enzyme immunoassay
employing both mouse monoclonal and rabbit polyclonal antibodies. A
rabbit polyclonal antibody, specific for the human WAF1 protein,
has been immobilized onto the surface of the plastic wells provided
in the kit. Any p21WAF present in the sample to be assayed will
bind to the capture antibody. The biotinylated detector monoclonal
antibody also recognizes human p21WAF1 protein, and will bind to
any p21WAF1, which has been retained by the capture antibody. The
detector antibody, in turn, is bond by horseradish
peroxidase-conjugated streptavidin. The horseradish peroxidase
catalyses the conversion of the chromogenic substrate
tetra-methylbenzidine from a colorless solution to a blue solution
(or yellow after the addition of stopping reagent), the intensity
of which is proportional to the amount of p21WAF1 protein bond to
the plate. The colored reaction product is quantified using a
spectrophotometer. Quantitation is achieved by the construction of
a standard curve using known concentrations of p21WAF1 (provided
lyophilised) (see example C.5).
Example C.1
In Vitro Assay for Inhibition of Histone Deacetylase
[0260] HeLa nuclear extracts (supplier: Biomol) were incubated at
60 .mu.g/ml with 2.times.10.sup.-8 M of radiolabeled peptide
substrate. As a substrate for measuring HDAC activity a synthetic
peptide, i.e. the amino acids 14-21 of histone 144, was used. The
substrate is biotinylated at the NH.sub.2-terminal part with a
6-aminohexanoic acid spacer, and is protected at the COOH-terminal
part by an amide group and specifically [.sup.3H]acetylated at
lysine 16. The substrate,
biotin-(6-aminohexanoic)Gly-Ala-([.sup.3H]-acetyl-Lys-Arg-His-Arg-Lys-Val-
-NH.sub.2), was added in a buffer containing 25 mM Hepes, 1 M
sucrose, 0.1 mg/ml BSA and 0.01% Triton X-100 at pH 7.4. After 30
min the deacetylation reaction was terminated by the addition of
HCl and acetic acid. (final concentration 0.035 mM and 3.8 mM
respectively). After stopping the reaction, the free
.sup.3H-acetate was extracted with ethylacetate. After mixing and
centrifugation, the radioactivity in an aliquot of the upper
(organic) phase was counted in a .beta.-counter.
[0261] For each experiment, controls (containing HeLa nuclear
extract and DMSO without compound), a blank incubation (containing
DMSO but no HeLa nuclear extract or compound) and samples
(containing compound dissolved in DMSO and HeLa nuclear extract)
were run in parallel. In first instance, compounds were tested at a
concentration of 10.sup.-5M. When the compounds showed activity at
10.sup.-5M, a concentration-response curve was made wherein the
compounds were tested at concentrations between 10.sup.-5M and
10.sup.-12M. In each test the blank value was subtracted from both
the control and the sample values. The control sample represented
100% of substrate deacetylation. For each sample the radioactivity
was expressed as a percentage of the mean value of the controls.
When appropriate IC.sub.50-values (concentration of the drug,
needed to reduce the amount of metabolites to 50% of the control)
were computed using probit analysis for graded data. Herein the
effects of test compounds are expressed as pIC.sub.50 (the negative
log value of the IC.sub.50-value). All tested compounds showed
enzymatic activity at a test concentration of 10.sup.-5M and 14
compounds had a pIC.sub.50>5 (see table F-2).
Example C.2
Determination of Antiproliferative Activity on A2780 Cells
[0262] All compounds tested were dissolved in DMSO and further
dilutions were made in culture medium. Final DMSO concentrations
never exceeded 0.1% (v/v) in cell proliferation assays. Controls
contained A2780 cells and DMSO without compound and blanks
contained DMSO but no cells. MTT was dissolved at 5 mg/ml in PBS. A
glycine buffer comprised of 0.1 M glycine and 0.1 M NaCl buffered
to pH 10.5 with NaOH (1 N) was prepared (all reagents were from
Merck).
[0263] The human A2780 ovarian carcinoma cells (a kind gift from
Dr. T. C. Hamilton [Fox Chase Cancer Centre, Pennsylvania, USA])
were cultured in RPMI 1640 medium supplemented with 2 mM
L-glutamine, 50 .mu.g/ml gentamicin and 10% fetal calf serum.
[0264] Cells were routinely kept as monolayer cultures at
37.degree. C. in a humidified 5% CO.sub.2 atmosphere. Cells were
passaged once a week using a trypsin/EDTA solution at a split ratio
of 1:40. All media and supplements were obtained from Life
Technologies. Cells were free of mycoplasma contamination as
determined using the Gen-Probe Mycoplasma Tissue Culture kit
(supplier: BioMerieux).
[0265] Cells were seeded in NLC.TM. 96-well culture plates
(Supplier: Life Technologies) and allowed to adhere to the plastic
overnight. Densities used for plating were 1500 cells per well in a
total volume of 200 .mu.l medium. After cell adhesion to the
plates, medium was changed and drugs and/or solvents were added to
a final volume of 2001. Following four days of incubation, medium
was replaced by 200 .mu.l fresh medium and cell density and
viability was assessed using an MTT-based assay. To each well, 25
.mu.l MTT solution was added and the cells were further incubated
for 2 hours at 37.degree. C. The medium was then carefully
aspirated and the blue MTT-formazan product was solubilized by
addition of 25 .mu.l glycine buffer followed by 100 .mu.l of DMSO.
The microtest plates were shaken for 10 min on a microplate shaker
and the absorbance at 540 nm was measured using an Emax 96-well
spectrophotometer (Supplier: Sopachem). Within an experiment, the
results for each experimental condition are the mean of 3 replicate
wells. For initial screening purposes, compounds were tested at a
single fixed concentration of 10.sup.-6 M. For active compounds,
the experiments were repeated to establish full
concentration-response curves. For each experiment, controls
(containing no drug) and a blank incubation (containing no cells or
drugs) were run in parallel. The blank value was subtracted from
all control and sample values. For each sample, the mean value for
cell growth (in absorbance units) was expressed as a percentage of
the mean value for cell growth of the control. When appropriate,
IC.sub.50-values (concentration of the drug, needed to reduce cell
growth to 50% of the control) were computed using probit analysis
for graded data (Finney, D. J., Probit Analyses, 2.sup.nd Ed.
Chapter 10, Graded Responses, Cambridge University Press, Cambridge
1962). Herein the effects of test compounds are expressed as
pIC.sub.50 (the negative log value of the IC.sub.50-value). Most of
the tested compounds showed cellular activity at a test
concentration of 10.6 M and 14 compounds had a pIC.sub.50>5 (see
table F-2).
Example C.3
Kinetic Solubility in Aqueous Media
[0266] In the first dilution step, 10 .mu.l of a concentrated
stock-solution of the active compound, solubilized in DMSO (5 mM),
was added to 100 .mu.l phosphate citrate buffer pH 7.4 and mixed.
In the second dilution step, an aliquot (20 .mu.l) of the first
dilution step was further dispensed in 100 .mu.l phosphate citrate
buffer pH 7.4 and mixed. Finally, in the third dilution step, a
sample (20 .mu.l) of the second dilution step was further diluted
in 100 .mu.l phosphate citrate buffer pH 7.4 and mixed. All
dilutions were performed in 96-well plates. Immediately after the
last dilution step the turbidity of the three consecutive dilution
steps were measured with a nephelometer. Dilution was done in
triplicate for each compound to exclude occasional errors. Based on
the turbidity measurements a ranking is performed into 3 classes.
Compounds with high solubility obtained a score of 3 and for this
compounds the first dilution is clear. Compounds with medium
solubility obtained a score of 2. For these compounds the first
dilution is unclear and the second dilution is clear. Compounds
with low solubility obtained a score of 1 and for these compounds
both the first and the second dilution are unclear. The solubility
of 14 compounds was measured. From these compounds 6 showed a score
of 3, 2 had a score of 2 and 6 demonstrated a score of 1 (see table
F-2).
Example C.4
Metabolic Stability
[0267] Sub-cellular tissue preparations were made according to
Gorrod et al. (Xenobiotica 5: 453-462, 1975) by centrifugal
separation after mechanical homogenization of tissue. Liver tissue
was rinsed in ice-cold 0.1 M Tris-HCl (pH 7.4) buffer to wash
excess blood. Tissue was then blotted dry, weighed and chopped
coarsely using surgical scissors. The tissue pieces were
homogenized in 3 volumes of ice-cold 0.1 M phosphate buffer (pH
7.4) using either a Potter-S (Braun, Italy) equipped with a Teflon
pestle or a Sorvall Omni-Mix homogeniser, for 7.times.10 sec. In
both cases, the vessel was kept in/on ice during the homogenization
process.
[0268] Tissue homogenates were centrifuged at 9000.times.g for 20
minutes at 4.degree. C. using a Sorvall centrifuge or Beckman
Ultracentrifuge. The resulting supernatant was stored at
-80.degree. C. and is designated `S9`.
[0269] The S9 fraction can be further centrifuged at
100.000.times.g for 60 minutes (4.degree. C.) using a Beckman
ultracentrifuge. The resulting supernatant was carefully aspirated,
aliquoted and designated `cytosol`. The pellet was re-suspended in
0.1 M phosphate buffer (pH 7.4) in a final volume of 1 ml per 0.5 g
original tissue weight and designated `microsomes`.
[0270] All sub-cellular fractions were aliquoted, immediately
frozen in liquid nitrogen and stored at -80.degree. C. until
use.
[0271] For the samples to be tested, the incubation mixture
contained PBS (0.1M), compound (5 .mu.M), microsomes (1 mg/ml) and
a NADPH-generating system (0.8 mM glucose-6-phosphate, 0.8 mM
magnesium chloride and 0.8 Units of glucose-6-phosphate
dehydrogenase). Control samples contained the same material but the
microsomes were replaced by heat inactivated (10 min at 95 degrees
Celsius) microsomes. Recovery of the compounds in the control
samples was always 100%.
[0272] The mixtures were preincubated for 5 min at 37 degrees
Celsius. The reaction was started at timepoint zero (t=0) by
addition of 0.8 mM NADP and the samples were incubated for 15 min
(t=15). The reaction was terminated by the addition of 2 volumes of
DMSO. Then the samples were centrifuged for 10 min at 900.times.g
and the supernatants were stored at room temperature for no longer
as 24 h before analysis. All incubations were performed in duplo.
Analysis of the supernatants was performed with LC-MS analysis.
Elution of the samples was performed on a Xterra MS C18
(50.times.4.6 mm, 5 .mu.m, Waters, US). An Alliance 2790 (Supplier:
Waters, US) HPLC system was used. Elution was with buffer A (25 mM
ammoniumacetate (pH 5.2) in H.sub.2O/acetonitrile (95/5)), solvent
B being acetonitrile and solvent C methanol at a flow rate of 2.4
ml/min. The gradient employed was increasing the organic phase
concentration from 0% over 50% B and 50% C in 5 min up to 100% B in
1 min in a linear fashion and organic phase concentration was kept
stationary for an additional 1.5 min. Total injection volume of the
samples was 25 .mu.l.
[0273] A Quattro (supplier: Micromass, Manchester, UK) triple
quadrupole mass spectrometer fitted with and ESI source was used as
detector. The source and the desolvation temperature were set at
120 and 350.degree. C. respectively and nitrogen was used as
nebuliser and drying gas. Data were acquired in positive scan mode
(single ion reaction). Cone voltage was set at 10 V and the dwell
time was 1 sec.
[0274] Metabolic stability was expressed as % metabolism of the
compound after 15 min of incubation in the presence of active
microsomes
( E ( act ) ) ( % metabolism = 100 % - ( ( Total Ion Current ( T I
C ) of E ( act ) at t = 15 T I C of E ( act ) at t = 0 ) .times.
100 ) . ##EQU00001##
Compounds that had a percentage metabolism less than 20% were
defined as highly metabolic stable. Compound that had a metabolism
between 20 and 70% were defined as intermediately stable and
compounds that showed a percentage metabolism higher than 70 were
defined as low metabolic stable. Three reference compounds were
always included whenever a metabolic stability screening was
performed. Verapamil was included as a compound with low metabolic
stability (% metabolism 73%). Cisapride was included as a compound
with medium metabolic stability (% metabolism 45%) and propanol was
included as a compound with intermediate to high metabolic
stability (25% metabolism). These reference compounds were used to
validate the metabolic stability assay.
[0275] Three compounds were tested. One compound had a percentage
metabolism less than 20% and two compounds had a percentage
metabolism between 20 and 70%.
Example C.5
p21 Induction Capacity
[0276] The following protocol has been applied to determine the p21
protein expression level in human A2780 ovarian carcinoma cells.
The A2780 cells (20000 cells/180 .mu.l) were seeded in 96 microwell
plates in RPMI 1640 medium supplemented with 2 mM L-glutamine, 50
.mu.g/ml gentamicin and 10% fetal calf serum. 24 hours before the
lysis of the cells, compounds were added at final concentrations of
10.sup.-5, 10.sup.-6, 10.sup.-7 and 10.sup.-8 M. All compounds
tested were dissolved in DMSO and further dilutions were made in
culture medium. 24 hours after the addition of the compound, the
supernatants were removed from the cells. Cells were washed with
200 .mu.l ice-cold PBS. The wells were aspirated and 30 .mu.l of
lysis buffer (50 mM Tris.HCl (pH 7.6), 150 mM NaCl, 1% Nonidet p40
and 10% glycerol) was added. The plates were incubated overnight at
-70.degree. C.
[0277] The appropriate number of microtiter wells were removed from
the foil pouch and placed into an empty well holder. A working
solution (1.times.) of the Wash Buffer (20.times. plate wash
concentrate: 100 ml 20-fold concentrated solution of PBS and
surfactant. Contains 2% chloroacetamide) was prepared. The
lyophilised p21WAF standard was reconstituted with distilled
H.sub.2O and further diluted with sample diluent (provided in the
kit).
[0278] The samples were prepared by diluting them 1:4 in sample
diluent. The samples (100 .mu.l) and the p21WAF1 standards (100
.mu.l) were pipetted into the appropriate wells and incubated at
room temperature for 2 hours. The wells were washed 3 times with
1.times. wash buffer and then 100 .mu.l of detector antibody
reagent (a solution of biotinylated monoclonal p21WAF1 antibody)
was pipetted into each well. The wells were incubated at room
temperature for 1 hour and then washed three times with 1.times.
wash buffer. The 400.times. conjugate (peroxidase streptavidin
conjugate: 400-fold concentrated solution) was diluted and 100
.mu.l of the 1.times. solution was added to the wells. The wells
were incubated at room temperature for 30 min and then washed 3
times with 1.times. wash buffer and 1 time with distilled H.sub.2O.
Substrate solution (chromogenic substrate) (100 .mu.l) was added to
the wells and the wells were incubated for 30 minutes in the dark
at room temperature Stop solution was added to each well in the
same order as the previously added substrate solution. The
absorbance in each well was measured using a spectrophotometric
plate reader at dual wavelengths of 450/595 nm.
[0279] For each experiment, controls (containing no drug) and a
blank incubation (containing no cells or drugs) were run in
parallel. The blank value was subtracted from all control and
sample values. For each sample, the value for p21WAF1 induction (in
absorbance units) was expressed as the percentage of the value for
p21WAF1 present in the control. Percentage induction higher than
130% was defined as significant induction. Three compounds were
tested in this assay and showed significant induction.
TABLE-US-00002 TABLE F-2 Table F-2 lists the results of the
compounds that were tested according to example C.1, C.2, and C.3.
Enzyme Cellular activity activity Solubility Co. No. pIC50 pIC50
Score 15 <5 <5 3 10 6.81 5.396 3 1 7.676 5.61 3 3 7.306 5.506
2 11 6.594 5.6 1 5 7.525 5.473 3 4 7.314 5.838 1 14 7.077 5.201 1 6
6.853 5.345 2 12 7.592 5.718 3 2 6.871 5.804 1 13 6.934 5.452 7
7.408 5.109 1 8 7.23 5.721 1 9 7.161 5.667 3
D. Composition Example
Film-Coated Tablets
Preparation W of Tablet Core
[0280] A mixture of 100 g of a compound of formula (I), 570 g
lactose and 200 g starch is mixed well and thereafter humidified
with a solution of 5 g sodium dodecyl sulphate and 10 g
polyvinyl-pyrrolidone in about 200 ml of water. The wet powder
mixture is sieved, dried and sieved again. Then there is added 100
g microcrystalline cellulose and 15 g hydrogenated vegetable oil.
The whole is mixed well and compressed into tablets, giving 10.000
tablets, each comprising 10 mg of a compound of formula (I).
Coating
[0281] To a solution of 10 g methyl cellulose in 75 ml of
denaturated ethanol there is added a solution of 5 g of ethyl
cellulose in 150 ml of dichloromethane. Then there are added 75 ml
of dichloromethane and 2.5 ml 1,2,3-propanetriol 10 g of
polyethylene glycol is molten and dissolved in 75 ml of
dichloromethane. The latter solution is added to the former and
then there are added 2.5 g of magnesium octadecanoate, 5 g of
polyvinyl-pyrrolidone and 30 ml of concentrated colour suspension
and the whole is homogenated. The tablet cores are coated with the
thus obtained mixture in a coating apparatus.
* * * * *