Decorin proteoglycan inhibitor of fibrinogen blood clotting

Abstract

The present invention provides compositions and methods of inhibiting fibrin(ogen) clot formation by utilizing decorin proteoglycan as an anticoagulating and antithrombotic agent. The decorin proteoglycan comprises a decorin core protein or a fragment thereof covalently linked to a galactosaminoglycan polysaccharide. The decorin core protein acts as an anticoagulant and as a carrier for the delivery of an antithrombotic galactosaminoglycan to fibrinogen. Fibrin clotting is inhibited by the decorin proteoglycan in a concentration-dependent fashion.

Description

CROSS-REFERENCE TO RELATED APPLICATION

[0001] This is a divisional of non-provisional application U.S. Ser. No. 10/898,841, filed Jul. 26, 2004, which claims benefit of provisional U.S. Ser. No. 60/490,081, filed Jul. 25, 2003, now abandoned.

BACKGROUND OF THE INVENTION

[0003] 1. Field of the Invention

[0004] The present invention relates generally to the field of blood clotting research. More specifically, the present invention provides methods of using decorin proteoglycan as an anticoagulating and/or antithrombotic agent to inhibit fibrin(ogen) clot formation.

[0005] 2. Description of the Related Art

[0006] Decorin is composed of a 40 kDa core protein and a glycosaminoglycan chain. Many glycosaminoglycans affect blood coagulation activity. For example, heparin and heparan sulfate have been used as efficient anticoagulants clinically for decades. These polysaccharides indirectly inhibit thrombin by activating serpins. Heparin activates antithrombin III, the major physiological regulator of thrombin, as well as heparin cofactor II. Both heparin-induced thrombocytopenia and hemorrhage are side effects to the use of heparin as an antithrombotic agent.

[0007] Although heparin/antithrombin III complexes efficiently inhibit soluble thrombin, they only weakly inhibit thrombin bound to surfaces such as membranes or a fibrin(ogen) clot. Fibrin-bound thrombin represents a reservoir of active thrombin that can exacerbate both venous and arterial thrombosis by generating more fibrin locally or when released by fibrinolysis. Fibrin-bound thrombin may also activate factor XIII, the transglutaminase that crosslinks fibrin and thrombin-activatable fibrinolysis inhibitor.

[0008] Fibrin-bound thrombin is inaccessible to heparin/heparin cofactor II inactivation, but it is susceptible to dermatan sulfate/heparin cofactor II inactivation. As opposed to heparin, dermatan sulfate specifically activates heparin cofactor II inhibition of thrombin. However, hemorrhage is also a side effect of utilizing dermatan sulfate as an antithrombotic agent.

[0009] Accordingly, there is a need in the art for anticoagulating and antithrombotic agents with high activity and low incidents of side effects. The present invention fulfills this longstanding need.

SUMMARY OF THE INVENTION

[0010] The present invention provides compositions and methods of utilizing decorin proteoglycan to inhibit thrombin-induced fibrin(ogen) clotting. Antithrombotic dermatan sulfate or dermatan sulfate/heparin cofactor II complex is specifically targeted to fibrin(ogen), an important site of thrombin action and a reservoir of active thrombin.

[0011] The anticoagulating and antithrombotic decorin proteoglycan of the present invention comprise (i) a decorin core protein or a fragment thereof and (ii) a galactosaminoglycan polysaccharide. In one embodiment, the decorin core protein or a fragment thereof is covalently linked to the galactosaminoglycan polysaccharide. In one specific embodiment, the decorin core protein fragment comprises the N-terminus of the decorin core protein. According to one particular embodiment, the decorin core protein fragment is a 45 amino acid residue recombinant Zn.sup.2+-binding peptide (SEQ ID NO: 2) mimicking the N-terminal segment of decorin (SEQ ID NO: 1). Examples of galactosaminoglycan polysaccharides include heparin, heparan sulfate, dermatan sulfate, chondroitin sulfate, or a mixture of these galactosaminoglycan polysaccharides.

[0012] In another embodiment, there is provided an anticoagulating and antithrombotic composition comprising the decorin proteoglycan disclosed herein and a pharmaceutically acceptable carrier. This anticoagulating and antithrombotic composition can be incorporated into a kit for inhibiting fibrin clot formation.

[0013] In yet another embodiment, there is provided a method of inhibiting fibrin clot formation, comprising the step of contacting fibrinogen with the decorin proteoglycan disclosed herein. In one embodiment, the decorin proteoglycan is attached to the surface of a medical device or a polymeric biomaterial.

[0014] In yet another embodiment, there is provided a method of inhibiting fibrin clot formation in a subject such as an animal or a human, comprising the step of administering the decorin proteoglycan disclosed herein to said subject.

[0015] Other and further aspects, features, and advantages of the present invention will be apparent from the following description of the presently preferred embodiments of the invention. These embodiments are given for the purpose of disclosure.

BRIEF DESCRIPTION OF THE DRAWINGS

[0016] The appended drawings have been included herein so that the above-recited features, advantages and objects of the invention will become clear and can be understood in detail. These drawings form a part of the specification. It is to be noted, however, that the appended drawings illustrate preferred embodiments of the invention and should not be considered to limit the scope of the invention.

[0017] FIG. 1 shows the concentration-dependent effects of decorin on the progress of fibrin clotting. Two .mu.M fibrinogen (Fg) was pre-incubated alone for 4 hours at ambient temperature in HBS, 0.1% CHAPS, 20 .mu.M ZnSO.sub.4 or with increasing concentrations of decorin proteoglycan (DcnPg). Clotting was initiated by the addition of thrombin to a final concentration of 0.25 U/ml and monitored by absorbance at 405 nm. This example shows that contacting fibrinogen with increasing concentrations of decorin proteoglycan prior to introducing thrombin slows the progress of fibrin clotting in a concentration-dependent fashion.

[0018] FIGS. 2A-2B show Zn.sup.2+-dependent effect of decorin on fibrin clotting. Two .mu.M fibrinogen was pre-incubated in HBS, 0.1% CHAPS containing either 0.2 .mu.M, 20 .mu.M, or 100 .mu.M ZnSO.sub.4. Decorin proteoglycan (DcnPg) (0.4 .mu.M) derived from cultured mammalian cells (FIG. 2A), or 2 .mu.M decorin core protein (Dcn) expressed by vaccinia virus-infected mammalian cell line CHO745 that lacks xylosyl transferase activity (FIG. 2B) were also added to the medium. Time course of fibrin clotting was monitored spectroscopically after adding thrombin to a final concentration of 0.25 U/ml.

[0019] FIGS. 3A-3B show the comparison of inhibitory action of decorin proteoglycan and heparin cofactor II towards thrombin cleavage of fibrinogen or a chromogenic substrate. Two .mu.M fibrinogen was pre-incubated in HBS, 0.1% CHAPS, 20 .mu.M ZnSO.sub.4 with or without 2.5 U/ml heparin cofactor II (HCII); 0.4 .mu.M decorin proteoglycan (DcnPg) expressed by mammalian cells capable of producing dermatan sulfate; 0.4 .mu.M decorin proteoglycan plus 2.5 U/ml heparin cofactor II; 0.4 .mu.M chondroitin sulfate B (CSB) plus 2.5 U/ml HCII; 0.4 .mu.M chondroitin sulfate A (CSA) plus 2.5 U/ml HCII (FIG. 3A); or 2.5 U/ml hirudin or 0.6 mM chromogenic thrombin substrate S-2238 (FIG. 3B). After adding thrombin to 0.25 U/ml, the progress of each reaction was traced by the absorbance at 405 nm which detects fibrin clotting (FIG. 3A) or p-nitroaniline release (FIG. 3B).

[0020] FIG. 4 shows the concentration-dependent effects of decorin core protein (decorin) on fibrin clotting. Two .mu.M fibrinogen was pre-incubated for 1.5 hours at ambient temperature in HBS, 0.1% CHAPS, 20 uM ZnCl.sub.2, 5 mM CaCl.sub.2, 5 mM EACA, pH 7.4 with or without increasing concentrations of decorin core protein (decorin) expressed by CHO745 cells. All subsequent steps were performed as described above.

[0021] FIGS. 5A-5C show decorin core protein alters the structure of a fibrin(ogen) clot. Fibrin(ogen) clotting was induced by the addition of thrombin (final concentration 0.4 U/ml) to fibrinogen pre-incubated in the absence or presence of decorin core protein under the solution conditions described in FIG. 4. Scanning electron microscopy was utilized to obtain images of clots formed from 1.2 mM fibrin(ogen) alone (FIG. 5A) or in the presence of 0.24 mM (FIG. 5B) or 1.2 mM (FIG. 5C) decorin core protein. (16,000.times. magnification).

[0022] FIG. 6 shows the concentration-dependent effects of a 45 amino acid residue peptide mimetic of the N-terminal region of decorin core protein (DcnNTD) on fibrin clotting. Clotting assays were performed as described above in FIG. 4.

DETAILED DESCRIPTION OF THE INVENTION

[0023] The present invention provides a method of inhibiting fibrin(ogen) clot formation by utilizing decorin proteoglycan as an anticoagulating and antithrombotic agent. In one embodiment, decorin proteoglycan consists of decorin core protein and a covalently attached antithrombotic galactosaminoglycan polysaccharide. A method of inhibiting fibrin clotting using decorin core protein, or related peptides, which act as an anticoagulating agents has been described in U.S. Pat. No. 6,413,931, the entire content of which is incorporated herein by reference. Likewise, dermatan sulfate polysaccharide has been utilized as an effective antithrombotic agent both in vivo and in vitro. Decorin proteoglycan of the present invention, which is a combination of decorin core protein and an attached antithrombotic galactosaminoglycan polysaccharide, is an improvement over either decorin core protein or dermatan sulfate alone.

[0024] Features that contribute to the mode of action of the present decorin proteoglycan derive from each structural component and include: 1) the fibrinogen-binding structure of the decorin core protein and 2) the galactosaminoglycan composition of the polysaccharide. Decorin-fibrinogen binding is mediated by the N-terminal segment of the core protein, a segment that forms multimers in the presence of zinc (Dugan et al., 2003). The N-terminal segment of decorin core protein binds zinc at physiological concentrations (Yang et al., 1999). Furthermore, both decorin proteoglycan and decorin core protein slow the progress of fibrin clotting in a zinc-dependent fashion and at physiological zinc concentrations.

[0025] The galactosaminoglycan component of decorin proteoglycan may consist of chondroitin sulfate or dermatan sulfate, or a mixture thereof, depending upon the cell-type in which it is expressed. Acting alone, chondroitin sulfate polysaccharide promotes fibrin clotting, while dermatan sulfate polysaccharide indirectly inhibits thrombin through heparin cofactor II activation. Dermatan sulfate-containing galactosaminoglycans isolated from decorin as well as type V collagen-bound decorin proteoglycan enhance the inhibitory activity of heparin cofactor II toward thrombin cleavage of a chromogenic substrate. Decorin proteoglycan according to the present invention enhances heparin cofactor II inhibition of thrombin-induced fibrin(ogen) clotting. Significantly, decorin proteoglycan is a more potent enhancer than dermatan sulfate polysaccharide. Accordingly, decorin proteoglycan produced in HEK 293 cells contains an antithrombotic component. Taken together, the decorin core protein acts as an anticoagulant and as a carrier for the delivery of an antithrombotic galactosaminoglycan to fibrinogen.

[0026] The present invention provides several methods and related biological compositions involved in the inhibition of fibrin(ogen) clot formation. The invention provides a method of inhibiting fibrin clot formation, comprising contacting fibrinogen with a decorin proteoglycan composition. As used herein, the term "inhibiting clot formation" refers to any prolonging in the time of clot formation or any reduction in the extent of clot formation as compared to control conditions in the absence of decorin proteoglycan composition.

[0027] In one aspect of the present invention, there is provided an anticoagulating and antithrombotic decorin proteoglycan comprising decorin core protein or a fragment thereof and a galactosaminoglycan polysaccharide. In one embodiment, the decorin core protein or a fragment thereof is covalently linked to the galactosaminoglycan polysaccharide. Preferably, the decorin core protein or a fragment thereof comprises a fibrinogen-binding domain. In general, the decorin core protein fragment comprises the N-terminus (SEQ ID NO: 1), or fragments or derivatives of SEQ ID NO: 1, of the decorin core protein. In one embodiment, the decorin core protein fragment has the sequence of SEQ ID NO: 2 or or fragments or derivatives thereof. Representative examples of galactosaminoglycan polysaccharides contained in the present decorin proteoglycan include heparin, heparan sulfate, chondroitin sulfate, dermatan sulfate, or a mixtures of these or other galactosaminoglycan polysaccharides.

[0028] The present invention also provides a kit for inhibiting fibrin clot formation, comprising the present decorin proteoglycan which is dispersed in a pharmaceutically acceptable carrier.

[0029] In another embodiment, there is provided a method of inhibiting fibrin clot formation, comprising the step of contacting fibrinogen with a decorin proteoglycan composition effective to inhibit fibrin clot formation in a sample. In general, the fibrin clot formation takes place in a biological sample such as a blood sample. In another embodiment, the decorin proteoglycan is attached to the surface of a medical device or a polymeric biomaterial.

[0030] In yet another embodiment, there is provided a method of inhibiting fibrin clot formation in a subject such as an animal or a human, comprising the step of providing to the subject a decorin proteoglycan composition effective to inhibit fibrin clot formation. In one embodiment, the decorin proteoglycan is attached to the surface of a medical device or a polymeric biomaterial.

[0031] It should be noted that all amino-acid residue sequences are represented herein by formulae whose left and right orientation is in the conventional direction of amino-terminus to carboxy-terminus. Furthermore, it should be noted that a dash at the beginning or end of an amino acid residue sequence indicates a peptide bond to a further sequence of one or more amino-acid residues.

[0032] The amino acids described herein are preferred to be in the "L" isomeric form. However, residues in the "D" isomeric form can be substituted for any L-amino acid residue, as long as the desired functional property of immunoglobulin binding is retained by the polypeptide. NH.sub.2 refers to the free amino group present at the amino terminus of a polypeptide. COOH refers to the free carboxy group present at the carboxy terminus of a polypeptide. In keeping with standard polypeptide nomenclature, J Biol. Chem., 243:3552-59 (1969), abbreviations for amino acid residues are known in the art.

[0033] Nonstandard amino acids may be incorporated into proteins by chemical modification of existing amino acids or by de novo synthesis of a protein/peptide. A nonstandard amino acid refers to an amino acid that differs in chemical structure from the twenty standard amino acids encoded by the genetic code. Post-translational modification in vivo can also lead to the presence of a nonstandard or amino acid derivative in a protein. The N-terminal NH.sub.2 and C-terminal COOH groups of a protein can also be modified, for example, by natural or artificial post-translational modification of a protein.

[0034] Proteins/peptides, such as the decorin core protein or fragments thereof, may be modified by amino acids substitutions. Often, some changes result in significant changes in the activity (agonists versus antagonists) and potency/affinity of proteins/peptides while others have little or no effect. Conservative substitutions are least likely to drastically alter the activity of a protein. A "conservative amino acid substitution" refers to replacement of amino acid with a chemically similar amino acid, i.e. replacing nonpolar amino acids with other nonpolar amino acids; substitution of polar amino acids with other polar amino acids, acidic residues with other acidic amino acids, etc. Examples of preferred conservative substitutions are set forth in Table I: TABLE-US-00001 TABLE 1 Conservative Amino Acid Substitutions Original Preferred Conservative Most Preferred Residue Substitutions Conservative Substitution Ala (A) Val; Leu; Ile Val Arg (R) Lys; Gln; Asn Lys Asn (N) Gln; His; Lys; Arg, Ser Gln Asp (D) Glu Glu Cys (C) Ser Ser Gln (Q) Asn Asn Glu (E) Asp Asp Gly (G) Pro, Ala, DAla Pro His (H) Asn; Gln; Lys; Arg Arg Ile (I) Leu; Val; Met; Ala; Phe; Nle Leu Leu (L) Ile; Val; Met; Ala; Phe; Nle Ile Lys (K) Arg; Gln; Asn Arg Met (M) Leu; Phe; Ile, Nle Leu Phe (F) Leu; Val; Ile; Ala Leu Pro (P) Gly, Sar Gly Ser (S) Thr Thr Thr (T) Ser Ser Trp (W) Tyr, Nal, Cpa Tyr Tyr (Y) Trp; Phe; Thr; Ser, His Phe Val (V) Ile; Leu; Met; Phe; Ala; Nle Leu Sar = sarcasine, Nal = naphthylalanine, Cpa = 4-chloro-phenylalanine

[0035] "Chemical derivative" refers to a subject polypeptide, such as the decorin core protein or fragments thereof, having one or more residues chemically derivatized by reaction of a functional side group. Such derivatized polypeptides include, for example, those in which free amino groups have been derivatized to form specific salts or derivatized by alkylation and/or acylation, p-toluene sulfonyl groups, carbobenzoxy groups, t-butylocycarbonyl groups, chloroacetyl groups, formyl or acetyl groups among others. Free carboxyl groups may be derivatized to form organic or inorganic salts, methyl and ethyl esters or other types of esters or hydrazides and preferably amides (primary or secondary). Chemical derivatives may include those peptides which contain one or more naturally occurring amino acids derivatives of the twenty standard amino acids. For example, 4-hydroxyproline may be substituted for serine; and ornithine may be substituted for lysine. Peptides embraced by the present invention also include peptides having one or more residue additions and/or deletions relative to the specific peptide whose sequence is shown herein, so long as the modified peptide maintains the requisite biological activity.

[0036] The preferred dose for human administration can be determined based on the needs of the individual patient and the nature of the disorder being treated. The dose should be adjusted to suit the individual to whom the composition is administered and will vary with age, weight and metabolism of the individual. In general, decorin proteoglycan is administered in a dosage range of from about 0.01 mg/kg to about 100 mg/kg of the individual's body weight.

[0037] Suitable methods of administration of any pharmaceutical composition disclosed in this application include, but are not limited to, topical, oral, intravenous, and intraperitoneal administration.

[0038] For topical administration, the composition can be formulated in the form of an ointment, cream, gel, or lotion. Wound or surgical dressings, or sutures may be impregnated with the composition. The composition may contain conventional additives, such as preservatives or solvents to promote penetration and emollients. Topical formulations may also contain conventional carriers such as cream or ointment bases, ethanol, or oleyl alcohol.

[0039] The following examples are given for the purpose of illustrating various embodiments of the invention and are not meant to limit the present invention in any fashion. The present examples, along with the methods, procedures, treatments, molecules, and specific compounds described herein are presently representative of preferred embodiments. One skilled in the art will appreciate readily that the present invention is well adapted to carry out the objects and obtain the ends and advantages mentioned, as well as those objects, ends and advantages inherent herein. Changes therein and other uses which are encompassed within the spirit of the invention as defined by the scope of the claims will occur to those skilled in the art.

EXAMPLE 1

Concentration-Dependent Effect of Decorin Proteoglycan On The Progress of Fibrin Clotting

[0040] Two .mu.M fibrinogen was pre-incubated alone for 4 hours at ambient temperature in HBS, 0.1% CHAPS, 20 .mu.M ZnSO.sub.4 or with increasing concentrations of decorin proteoglycan derived from transfected mammalian cells. Subsequently, aliquots of each pre-incubation mixture were dispensed into a microliter plate. Clotting was initiated by the addition of thrombin to a final concentration of 0.25 U/ml and monitored by absorbance at 405 nm.

[0041] FIG. 1 shows that contacting fibrinogen with increasing concentrations of decorin proteoglycan prior to introducing thrombin slows the progress of fibrin clotting in a concentration-dependent fashion.

EXAMPLE 2

Zn.sup.2+-Dependent Effect of Decorin Proteoglycan On Fibrin Clotting

[0042] Two .mu.M fibrinogen was pre-incubated in HBS, 0.1% CHAPS containing either 0.2 .mu.M, 20 .mu.M, or 100 .mu.M ZnSO.sub.4. Decorin proteoglycan (DcnPg) (0.4 .mu.M) derived from cultured mammalian cells (FIG. 2A), or 2 .mu.M decorin core protein (Dcn) expressed by vaccinia virus-infected mammalian cell line CHO745 that lacks xylosyl transferase activity (FIG. 2B) were also added to the medium. Time course of fibrin clotting was monitored spectroscopically after adding thrombin to a final concentration of 0.25 U/ml. This example demonstrates that Zn.sup.2+ enhances fibrin clotting in the presence or absence of decorin proteoglycan or decorin core protein. The results also show that contacting fibrinogen with a sufficient concentration of decorin proteoglycan in the presence of physiological levels of zinc will inhibit fibrin(ogen) clotting in vitro.

EXAMPLE 3

Comparison of The Inhibitory Action of Decorin Proteoglycan And Heparin Cofactor II Towards Thrombin Cleavage of Fibrinogen

[0043] Two .mu.M fibrinogen was pre-incubated in HBS, 0.1% CHAPS, 20 .mu.M ZnSO.sub.4 with or without 2.5 U/ml heparin cofactor II (HCII); 0.4 .mu.M decorin proteoglycan (DcnPg) expressed by mammalian cells capable of producing dermatan sulfate; 0.4 .mu.M decorin proteoglycan plus 2.5 U/ml HCII; 0.4 .mu.M chondroitin sulfate B (CSB) plus 2.5 U/ml HCII; 0.4 .mu.M chondroitin sulfate A (CSA) plus 2.5 U/ml HCII (FIG. 3A); or 2.5 U/ml hirudin or 0.6 mM chromogenic thrombin substrate S-2238 (FIG. 3B). After adding thrombin to 0.25 U/ml, the progress of each reaction was traced by the absorbance at 405 nm which detects fibrin clotting (FIG. 3A) or p-nitroaniline release (FIG. 3B).

[0044] As shown in FIG. 3A, the combination of decorin proteoglycan with heparin cofactor II inhibits clotting more potently than either compound alone and also more potently than dermatan sulfate with heparin cofactor II. According to FIG. 3B, the polysaccharide component of decorin may not be rich in dermatan sulfate since the effect of decorin on heparin cofactor II inhibition of thrombin was minimal in a system where thrombin cleaves a chromogenic substrate. These findings show that the potency of decorin proteoglycan derives from the ability of the decorin core protein to bind fibrinogen and target the antithrombotic polysaccharide and perhaps heparin cofactor II to the site of thrombin action.

EXAMPLE 4

Concentration-Dependent Effects of Decorin Core Protein On Fibrin Clotting

[0045] Two .mu.M fibrinogen was pre-incubated for 1.5 hours at ambient temperature in HBS, 0.1% CHAPS, 20 uM ZnCl.sub.2, 5 mM CaCl.sub.2, 5 mM EACA, pH 7.4 with or without increasing concentrations of decorin core protein expressed by CHO745 cells, a recombinant vaccinia virus-infected mutant CHO cell line lacking xylosyl-transferase activity. All subsequent steps were performed as described under Example 1.

[0046] The results show that contacting fibrinogen with increasing concentrations of decorin core protein prior to introducing thrombin slows the progress of fibrin(ogen) clotting and alters the structure of the clot in a concentration-dependent fashion (FIG. 4). The progress of clotting and final clot structure are described quantitatively as the rate and final absorbance values, respectively (Table 2). TABLE-US-00002 TABLE 2 Thrombin-Induced Clotting of Buffered Fibrin(ogen) in the Absence or Presence of Decorin Core Protein [Decorin] mM Rate.sup.a (mAbs/min) Final Abs.sup.a (405 nm) 0 90.0 .+-. 4.3 0.206 .+-. 0.005 0.2 61.8 .+-. 4.3 (p < 0.01) 0.160 .+-. 0.004 (p < 0.01) 0.4 55.0 .+-. 3.0 (p < 0.002) 0.145 .+-. 0.003 (p < 0.002) 1.0 38.8 .+-. 4.3 (p < 0.0003) 0.120 .+-. 0.002 (p < 0.0003) 2.0 34.5 .+-. 2.5 (p < 0.0006) 0.113 .+-. 0.001 (p < 0.0006) .sup.aValues in each column represent the mean (n = 4). p values indicate a statistically significant difference when compared to fibrinogen alone.

EXAMPLE 5

Decorin Core Protein Alters The Structure of Fibrin(ogen) Clot

[0047] Fibrin(ogen) clotting was induced by the addition of thrombin (final concentration 0.4 U/ml) to fibrinogen pre-incubated in the absence or presence of decorin core protein under the solution conditions described in Example 4. Scanning electron microscopy was utilized to obtain images of clots formed from 1.2 mM fibrin(ogen) alone (FIG. 5A) or in the presence of 0.24 mM (FIG. 5B) or 1.2 mM (FIG. 5C) decorin core protein. The results show that contacting fibrinogen with decorin core protein prior to introducing thrombin results in an altered fibrin(ogen) clot structure. Fibrin(ogen) fibril growth is attenuated by decorin in a concentration-dependent fashion.

EXAMPLE6

Concentration-Dependent Effects of A 45 Amino Acid Residue Peptide Mimetic of The N-Terminal Region of Decorin Core Protein On Fibrin Clotting

[0048] Clotting assays were performed in the absence or presence of a 45 amino acid residue peptide mimetic of the N-terminal region of decorin core protein (DcnNTD). Assay conditions were the same as described above. The results show that contacting fibrinogen with increasing concentrations of the 45 amino acid residue peptide mimetic of the N-terminal region of decorin core protein prior to introducing thrombin slows the progress of fibrin(ogen) clotting and alters the structure of the clot in a concentration-dependent fashion (FIG. 6). The progress of clotting and final clot structure are described quantitatively as the rate and final absorbance values, respectively (Table 3). TABLE-US-00003 TABLE 3 Thrombin-Induced Clotting of Buffered Fibrin(ogen) in the Absence or Presence of Decorin Peptide (DcnNTD) [DcnNTD] mM Rate.sup.a (mAbs/min) Final Abs.sup.a (405 nm) 0 110 .+-. 6 0.24 .+-. 0.01 2.0 102 .+-. 3 0.23 .+-. 0.01 6.0 91 .+-. 3 0.22 .+-. 0.01 (p < 0.03) 12 80 .+-. 2 0.213 .+-. 0.002 (p < 0.05) (p < 0.01) 30 70 .+-. 3 0.197 .+-. 0.005 (p < 0.002) (p < 0.01) .sup.aValues in a column represent the mean (n = 4). p values indicate a statistically significant difference when compared to fibrinogen alone.

[0049] The following references were cited herein: [0050] Dugan et al., J. Biol. Chem. 278:13655-13662 (2003). [0051] Yang et al., J. Biol. Chem. 274:12454-12460 (1999).

[0052] Any patents or publications mentioned in this specification are indicative of the levels of those skilled in the art to which the invention pertains. Further, these patents and publications are incorporated by reference herein to the same extent as if each individual publication was specifically and individually incorporated by reference.

[0053] One skilled in the art will appreciate readily that the present invention is well adapted to carry out the objects and obtain the ends and advantages mentioned, as well as those objects, ends and advantages inherent herein. Changes therein and other uses which are encompassed within the spirit of the invention as defined by the scope of the claims will occur to those skilled in the art.

Sequence CWU 1

1

2 1 41 PRT Artificial Sequence DOMAIN N-terminus region of decorin core protein 1 Asp Glu Ala Ser Gly Ile Ile Pro Tyr Asp Pro Asp Asn Pro Leu 5 10 15 Ile Ser Met Cys Pro Tyr Arg Cys Gln Cys His Leu Arg Val Val 20 25 30 Gln Cys Ser Asp Leu Gly Leu Asp Lys Val Pro 35 40 2 45 PRT Artificial Sequence DOMAIN recombinant decorin core protein N-terminus sequence 2 Gly Ser Asn Gly Asp Glu Ala Ser Gly Ile Ile Pro Tyr Asp Pro 5 10 15 Asp Asn Pro Leu Ile Ser Met Cys Pro Tyr Arg Cys Gln Cys His 20 25 30 Leu Arg Val Val Gln Cys Ser Asp Leu Gly Leu Asp Lys Val Pro 35 40 45

Claims

1. A method of inhibiting fibrin clot formation, comprising: contacting fibrinogen in a biological sample with a recombinant anticoagulating and antithrombotic decorin proteoglycan comprising decorin core protein linked to a galactosaminoglycan polysaccharide within an N-terminal sequence thereof.

2. The method of claim 1, wherein said galactosaminoglycan polysaccharide is covalently linked thereto.

3. The method of claim 1, wherein said decorin proteoglycan comprises a fibrinogen-binding domain.

4. The method of claim 4, wherein said N-terminus has the sequence of SEQ ID NO. 1.

5. The method of claim 1, wherein said decorin core protein has the sequence of SEQ ID NO. 2.

6. The method of claim 1, wherein said decorin proteoglycan is chemically derivatived.

7. The method of claim 1, wherein said decorin core protein or N-terminus thereof contains a conservative amino acid substitution.

8. The method of claim 1, wherein said galactosaminoglycan polysaccharide is heparin, heparan sulfate, chondroitin sulfate, dermatan sulfate, or combinations thereof.

9. The method of claim 1, wherein said biological sample is a blood sample.

10. The method of claim 9, wherein said decorin proteoglycan is attached to the surface of a medical device or a polymeric biomaterial.

11. A method of inhibiting fibrin clot formation in a subject, comprising: administering to said subject a pharmacologically effective amount of a recombinant anticoagulating and antithrombotic decorin proteoglycan comprising decorin core protein or a fragment thereof linked to a galactosaminoglycan polysaccharide.

12. The method of claim 11, wherein said galactosaminoglycan polysaccharide is covalently linked thereto.

13. The method of claim 11, wherein said decorin proteoglycan comprises a fibrinogen-binding domain.

14. The method of claim 11, wherein said N-terminus has the sequence of SEQ ID NO. 1.

15. The method of claim 11, wherein said decorin core protein has the sequence of SEQ ID NO. 2.

16. The method of claim 11, wherein said decorin proteoglycan is chemically derivatived.

17. The method of claim 11, wherein said decorin core protein or N-terminus thereof contains a conservative amino acid substitution.

18. The method of claim 11, wherein said galactosaminoglycan polysaccharide is heparin, heparan sulfate, chondroitin sulfate, dermatan sulfate, or combinations thereof.

19. The method of claim 11, wherein said subject is an animal or a human.

20. The method of claim 11, wherein said decorin proteoglycan is attached to the surface of a medical device or a polymeric biomaterial.

21. The method of claim 11, wherein said decorin proteoglycan is administered in a dosage of about 0.01 mg/kg to about 100 mg/kg of the subject's body weight.

22. The method of claim 11, wherein said decorin proteoglycan is administered topically, orally, intravenously, or intraperitoneally.

23. The method of claim 11, wherein said decorin proteoglycan is formulated as an ointment, a cream, a gel, a lotion, or wound dressings.