U.S. patent application number 10/483413 was filed with the patent office on 2005-06-09 for process for the preparation of l-amino acids using strains of the enterobacteriaceae family which contain an attenuated acek gene.
This patent application is currently assigned to DEGUSSA AG. Invention is credited to Hermann, Thomas.
Application Number | 20050124047 10/483413 |
Document ID | / |
Family ID | 26009727 |
Filed Date | 2005-06-09 |
United States Patent
Application |
20050124047 |
Kind Code |
A1 |
Hermann, Thomas |
June 9, 2005 |
Process for the preparation of l-amino acids using strains of the
enterobacteriaceae family which contain an attenuated acek gene
Abstract
The invention relates to a process for the preparation of
L-amino acids, in particular L-threonine, in which the following
steps are carried out: a) fermentation of microorganisms of the
Enterobacteriaceae family which produce the desired L-amino acid
and in which the aceK gene, or the nucleotide sequence which codes
for this, is attenuated, in particular eliminated, b) concentration
of the L-amino acid in the medium or in the cells of the bacteria,
and c) isolation of the L-amino acid.
Inventors: |
Hermann, Thomas; (Bielefeld,
DE) |
Correspondence
Address: |
OBLON, SPIVAK, MCCLELLAND, MAIER & NEUSTADT, P.C.
1940 DUKE STREET
ALEXANDRIA
VA
22314
US
|
Assignee: |
DEGUSSA AG
Bennigsenplatz 1
Duesseldorf
DE
D-40474
|
Family ID: |
26009727 |
Appl. No.: |
10/483413 |
Filed: |
January 20, 2004 |
PCT Filed: |
July 3, 2002 |
PCT NO: |
PCT/EP02/07353 |
Related U.S. Patent Documents
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Application
Number |
Filing Date |
Patent Number |
|
|
60306867 |
Jul 23, 2001 |
|
|
|
Current U.S.
Class: |
435/106 ;
435/252.33; 435/488 |
Current CPC
Class: |
C12N 15/52 20130101;
C12N 9/16 20130101; C12N 9/1205 20130101; C12P 13/08 20130101 |
Class at
Publication: |
435/106 ;
435/252.33; 435/488 |
International
Class: |
C12P 013/04; C12N
015/74; C12N 001/21 |
Foreign Application Data
Date |
Code |
Application Number |
Jul 18, 2001 |
DE |
101 35 051.1 |
Claims
What is claimed is:
1. A process for the preparation of L-amino acids, in particular
L-threonine, which comprises carrying out the following steps: a)
fermentation of microorganisms of the Enterobacteriaceae family
which produce the desired L-amino acid and in which the aceK gene,
or the nucleotide sequences which code for this, is or are
attenuated, in particular eliminated, b) concentration of the
desired L-amino acid in the medium or in the cells of the
microorganisms, and c) isolation of the desired L-amino acid,
constituents of the fermentation broth and/or the biomass in its
entirety or portions (>0 to 100%) thereof optionally remaining
in the product.
2. A process as claimed in claim 1, wherein microorganisms in which
further genes of the biosynthesis pathway of the desired L-amino
acid are additionally enhanced are employed.
3. A process as claimed in claim 1, wherein microorganisms in which
the metabolic pathways which reduce the formation of the desired
L-amino acid are at least partly eliminated are employed.
4. A process as claimed in claim 1, wherein the expression of the
polynucleotide which codes for the aceK gene is attenuated, in
particular eliminated.
5. A process as claimed in claim 1, wherein the regulatory and/or
catalytic properties of the polypeptide (enzyme protein) for which
the polynucleotide aceK codes are reduced.
6. A process as claimed in claim 1, wherein, for the preparation of
L-amino acids, microorganisms of the Enterobacteriaceae family in
which in addition at the same time one or more of the genes chosen
from the group consisting of: 6.1 the thrABC operon which codes for
aspartate kinase, homoserine dehydrogenase, homoserine kinase and
threonine synthase, 6.2 the pyc gene which codes for pyruvate
carboxylase, 6.3 the pps gene which codes for phosphoenol pyruvate
synthase, 6.4 the ppc gene which codes for phosphoenol pyruvate
carboxylase, 6.5 the pntA and pntB genes which code for
transhydrogenase, 6.6 the rhtB gene which imparts homoserine
resistance, 6.7 the mqo gene which codes for malate:quinone
oxidoreductase, 6.8 the rhtC gene which imparts threonine
resistance, 6.9 the thrE gene which codes for the threonine export
protein, 6.10 the gdhA gene which codes for glutamate
dehydrogenase, 6.11 the hns gene which codes for the DNA-binding
protein HLP-II, 6.12 the pgm gene which codes for
phosphoglucomutase, 6.13 the fba gene which codes for fructose
biphosphate aldolase, 6.14 the ptsH gene which codes for the
phosphohistidine protein hexose phosphotransferase, 6.15 the ptsI
gene which codes for enzyme I of the phosphotransferase system,
6.16 the crr gene which codes for the glucose-specific IIA
component, 6.17 the ptsG gene which codes for the glucose-specific
IIBC component, 6.18 the lrp gene which codes for the regulator of
the leucine regulon, 6.19 the mopB gene which codes for 10 Kd
chaperone, 6.20 the ahpc gene which codes for the small sub-unit of
alkyl hydroperoxide reductase, 6.21 the ahpF gene which codes for
the large sub-unit of alkyl hydroperoxide reductase, 6.22 the cysK
gene which codes for cysteine synthase A, 6.23 the cysB gene which
codes for the regulator of the cys regulon, 6.24 the cysJ gene
which codes for the flavoprotein of NADPH sulfite reductase, 6.25
the cysI gene which codes for the haemoprotein of NADPH sulfite
reductase and 6.26 the cysH gene which codes for adenylyl sulfate
reductase, is or are enhanced, in particular over-expressed, are
fermented.
7. A process as claimed in claim 1, wherein, for the preparation of
L-amino acids, microorganisms of the Enterobacteriaceae family in
which in addition at the same time one or more of the genes chosen
from the group consisting of: 7.1 the tdh gene which codes for
threonine dehydrogenase, 7.2 the mdh gene which codes for malate
dehydrogenase, 7.3 the gene product of the open reading frame (orf)
yjfA, 7.4 the gene product of the open reading frame (orf) ytfP,
7.5 the pckA gene which codes for phosphoenol pyruvate
carboxykinase 7.6 the poxB gene which codes for pyruvate oxidase
7.7 the aceA gene which codes for isocitrate lyase, 7.8 the dgsA
gene which codes for the DgsA regulator of the phosphotransferase
system, 7.9 the fruR gene which codes for the fructose repressor,
7.10 the rpoS gene which codes for the sigma.sup.38 factor, 7.11
the aspA gene which codes for aspartate ammonium lyase, 7.12 the
aceB gene which codes for malate synthase A and 7.13 the ugpB gene
which codes for the periplasmic binding protein of the sn-glycerol
3-phosphate transport system is or are attenuated, in particular
eliminated or reduced in expression, are fermented.
Description
FIELD OF THE INVENTION
[0001] This invention relates to a process for the fermentative
preparation of L-amino acids, in particular L-threonine, using
strains of the Enterobacteriaceae family in which the aceK gene is
attenuated.
PRIOR ART
[0002] L-Amino acids, in particular L-threonine, are used in human
medicine and in the pharmaceuticals industry, in the foodstuffs
industry and very particularly in animal nutrition.
[0003] It is known to prepare L-amino acids by fermentation of
strains of Enterobacteriaceae, in particular Escherichia coli (E.
coli) and Serratia marcescens. Because of their great importance,
work is constantly being undertaken to improve the preparation
processes. Improvements to the process can relate to fermentation
measures, such as e.g. stirring and supply of oxygen, or the
composition of the nutrient media, such as e.g. the sugar
concentration during the fermentation, or the working up to the
product form, by e.g. ion exchange chromatography, or the intrinsic
output properties of the microorganism itself.
[0004] Methods of mutagenesis, selection and mutant selection are
used to improve the output properties of these microorganisms.
Strains which are resistant to antimetabolites, such as e.g. the
threonine analogue .alpha.-amino-.beta.-hydroxyvaleric acid (AHV),
or are auxotrophic for metabolites of regulatory importance and
produce L-amino acid, such as e.g. L-threonine, are obtained in
this manner.
[0005] Methods of the recombinant DNA technique have also been
employed for some years for improving the strain of strains of the
Enterobacteriaceae family which produce L-amino acids, by
amplifying individual amino acid biosynthesis genes and
investigating the effect on the production.
OBJECT OF THE INVENTION
[0006] The object of the invention is to provide new measures for
improved fermentative preparation of L-amino acids, in particular
L-threonine.
SUMMARY OF THE INVENTION
[0007] The invention provides a process for the fermentative
preparation of L-amino acids, in particular L-threonine, using
microorganisms of the Enterobacteriaceae family which in particular
already produce L-amino acids and in which the nucleotide sequence
which codes for the aceK gene is attenuated.
DETAILED DESCRIPTION OF THE INVENTION
[0008] Where L-amino acids or amino acids are mentioned in the
following, this means one or more amino acids, including their
salts, chosen from the group consisting of L-asparagine,
L-threonine, L-serine, L-glutamate, L-glycine, L-alanine,
L-cysteine, L-valine, L-methionine, L-isoleucine, L-leucine,
L-tyrosine, L-phenylalanine, L-histidine, L-lysine, L-tryptophan
and L-arginine. L-Threonine is particularly preferred.
[0009] The term "attenuation" in this connection describes the
reduction or elimination of the intracellular activity of one or
more enzymes (proteins) in a microorganism which are coded by the
corresponding DNA, for example by using a weak promoter or a gene
or allele which codes for a corresponding enzyme with a low
activity or inactivates the corresponding enzyme (protein) or gene,
and optionally combining these measures.
[0010] By attenuation measures, the activity or concentration of
the corresponding protein is in general reduced to 0 to 75%, 0 to
50%, 0 to 25%, 0 to 10% or 0 to 5% of the activity or concentration
of the wild-type protein or of the activity or concentration of the
protein in the starting microorganism.
[0011] The process comprises carrying out the following steps:
[0012] a) fermentation of microorganisms of the Enterobacteriaceae
family in which the aceK gene is attenuated,
[0013] b) concentration of the corresponding L-amino acid in the
medium or in the cells of the microorganisms of the
Enterobacteriaceae family, and
[0014] c) isolation of the desired L-amino acid, constituents of
the fermentation broth and/or the biomass in its entirety or
portions (>0 to 100%) thereof optionally remaining in the
product.
[0015] The microorganisms which the present invention provides can
produce L-amino acids from glucose, sucrose, lactose, fructose,
maltose, molasses, optionally starch, optionally cellulose or from
glycerol and ethanol. They are representatives of the
Enterobacteriaceae family chosen from the genera Escherichia,
Erwinia, Providencia and Serratia. The genera Escherichia and
Serratia are preferred. Of the genus Escherichia the species
Escherichia coli and of the genus Serratia the species Serratia
marcescens are to be mentioned in particular.
[0016] Suitable strains, which produce L-threonine in particular,
of the genus Escherichia, in particular of the species Escherichia
coli, are, for example
[0017] Escherichia coli TF427
[0018] Escherichia coli H4578
[0019] Escherichia coli KY10935
[0020] Escherichia coli VNIIgenetika MG442
[0021] Escherichia coli VNIIgenetika M1
[0022] Escherichia coli VNIIgenetika 472T23
[0023] Escherichia coli BKIIM B-3996
[0024] Escherichia coli kat 13
[0025] Escherichia coli KCCM-10132
[0026] Suitable L-threonine-producing strains of the genus
Serratia, in particular of the species Serratia marcescens, are,
for example
[0027] Serratia marcescens HNr21
[0028] Serratia marcescens TLr156
[0029] Serratia marcescens T2000
[0030] Strains from the Enterobacteriaceae family which produce
L-threonine preferably have, inter alia, one or more genetic or
phenotypic features chosen from the group consisting of: resistance
to .alpha.-amino-.beta.-hydroxyvaleric acid, resistance to
thialysine, resistance to ethionine, resistance to
.alpha.-methylserine, resistance to diaminosuccinic acid,
resistance to .alpha.-aminobutyric acid, resistance to borrelidin,
resistance to rifampicin, resistance to valine analogues, such as,
for example, valine hydroxamate, resistance to purine analogues,
such as, for example, 6-dimethylaminopurine, a need for
L-methionine, optionally a partial and compensable need for
L-isoleucine, a need for meso-diaminopimelic acid, auxotrophy in
respect of threonine-containing dipeptides, resistance to
L-threonine, resistance to L-homoserine, resistance to L-lysine,
resistance to L-methionine, resistance to L-glutamic acid,
resistance to L-aspartate, resistance to L-leucine, resistance to
L-phenylalanine, resistance to L-serine, resistance to L-cysteine,
resistance to L-valine, sensitivity to fluoropyruvate, defective
threonine dehydrogenase, optionally an ability for sucrose
utilization, enhancement of the threonine operon, enhancement of
homoserine dehydrogenase I-aspartate kinase I, preferably of the
feed back resistant form, enhancement of homoserine kinase,
enhancement of threonine synthase, enhancement of aspartate kinase,
optionally of the feed back resistant form, enhancement of
aspartate semialdehyde dehydrogenase, enhancement of phosphoenol
pyruvate carboxylase, optionally of the feed back resistant form,
enhancement of phosphoenol pyruvate synthase, enhancement of
transhydrogenase, enhancement of the RhtB gene product, enhancement
of the RhtC gene product, enhancement of the YfiK gene product,
enhancement of a pyruvate carboxylase, and attenuation of acetic
acid formation.
[0031] It has been found that microorganisms of the
Enterobacteriaceae family produce L-amino acids, in particular
L-threonine, in an improved manner after attenuation, in particular
elimination, of the aceK gene.
[0032] The nucleotide sequences of the genes of Escherichia coli
belong to the prior art and can also be found in the genome
sequence of Escherichia coli published by Blattner et al. (Science
277: 1453-1462 (1997)).
[0033] The aceK gene is described, inter alia, by the following
data:
[0034] Description: Isocitrate dehydrogenase kinase/phosphatase
[0035] EC No.:
[0036] 2.7.1.116
[0037] 3.1.3.--
[0038] Reference: Cortay et al.; Journal of Bacteriology 170(1):
89-97 (1988); Klumpp et al.; Journal of Bacteriology 170(6):
2763-2769 (1988); Nelson et al.; Genetics 147(4): 1509-1520 (1997);
Laporte et al.; Biochimie 71(9-10): 1051-7 (1989)
[0039] Accession No.: AE000474
[0040] The nucleic acid sequences can be found in the databanks of
the National Center for Biotechnology Information (NCBI) of the
National Library of Medicine (Bethesda, Md., USA), the nucleotide
sequence databank of the European Molecular Biologies Laboratories
(EMBL, Heidelberg, Germany or Cambridge, UK) or the DNA databank of
Japan (DDBJ, Mishima, Japan).
[0041] The genes described in the text references mentioned can be
used according to the invention. Alleles of the genes which result
from the degeneracy of the genetic code or due to "sense mutations"
of neutral function can furthermore be used.
[0042] To achieve an attenuation, for example, expression of the
gene or the catalytic properties of the enzyme proteins can be
reduced or eliminated. The two measures can optionally be
combined.
[0043] The reduction in gene expression can take place by suitable
culturing, by genetic modification (mutation) of the signal
structures of gene expression or also by the antisense-RNA
technique. Signal structures of gene expression are, for example,
repressor genes, activator genes, operators, promoters,
attenuators, ribosome binding sites, the start codon and
terminators. The expert can find information in this respect, inter
alia, for example, in Jensen and Hammer (Biotechnology and
Bioengineering 58: 191-195 (1998)), in Carrier and Keasling
(Biotechnology Progress 15: 58-64 (1999), Franch and Gerdes
(Current Opinion in Microbiology 3: 159-164 (2000)) and in known
textbooks of genetics and molecular biology, such as, for example,
the textbook of Knippers ("Molekulare Genetik [Molecular
Genetics]", 6th edition, Georg Thieme Verlag, Stuttgart, Germany,
1995) or that of Winnacker ("Gene und Klone [Genes and Clones]",
VCH Verlagsgesellschaft, Weinheim, Germany, 1990).
[0044] Mutations which lead to a change or reduction in the
catalytic properties of enzyme proteins are known from the prior
art. Examples which may be mentioned are the works of Qiu and
Goodman (journal of Biological Chemistry 272: 8611-8617 (1997)),
Yano et al. (Proceedings of the National Academy of Sciences, USA
95: 5511-5515 (1998)), Wente and Schachmann (Journal of Biological
Chemistry 266: 20833-20839 (1991)). Summarizing descriptions can be
found in known textbooks of genetics and molecular biology, such as
e.g. that by Hagemann ("Allgemeine Genetik [General Genetics]",
Gustav Fischer verlag, Stuttgart, 1986).
[0045] Possible mutations are transitions, transversions,
insertions and deletions. Depending on the effect of the amino acid
exchange on the enzyme activity, "missense mutations" or "nonsense
mutations" are referred to. Insertions or deletions of at least one
base pair in a gene lead to "frame shift mutations", which lead to
incorrect amino acids being incorporated or translation being
interrupted prematurely. If a stop codon is formed in the coding
region as a consequence of the mutation, this also leads to a
premature termination of the translation. Deletions of several
codons typically lead to a complete loss of the enzyme activity.
Instructions on generation of such mutations are prior art and can
be found in known textbooks of genetics and molecular biology, such
as e.g. the textbook by Knippers ("Molekulare Genetik [Molecular
Genetics]", 6th edition, Georg Thieme Verlag, Stuttgart, Germany,
1995), that by Winnacker ("Gene und Klone [Genes and Clones]", VCH
Verlagsgesellschaft, Weinheim, Germany, 1990) or that by Hagemann
("Allgemeine Genetik [General Genetics]", Gustav Fischer Verlag,
Stuttgart, 1986).
[0046] Suitable mutations in the genes, such as, for example,
deletion mutations, can be incorporated into suitable strains by
gene or allele replacement.
[0047] A conventional method is the method, described by Hamilton
et al. (Journal of Bacteriology 171: 4617-4622 (1989)), of gene
replacement with the aid of a conditionally replicating pSC101
derivative pMAK705. Other methods described in the prior art, such
as, for example, those of Martinez-Morales et al. (Journal of
Bacteriology 181: 7143-7148 (1999)) or those of Boyd et al.
(Journal of Bacteriology 182: 842-847 (2000)), can likewise be
used.
[0048] It is also possible to transfer mutations in the particular
genes or mutations which affect expression of the particular genes
into various strains by conjugation or transduction.
[0049] It may furthermore be advantageous for the production of
L-amino acids, in particular L-threonine, with strains of the
Enterobacteriaceae family, in addition to attenuation of the aceK
gene, for one or more enzymes of the known threonine biosynthesis
pathway or enzymes of anaplerotic metabolism or enzymes for the
production of reduced nicotinamide adenine dinucleotide phosphate
or enzymes of glycolysis or PTS enzymes or enzymes of sulfur
metabolism to be enhanced.
[0050] The term "enhancement".sup.1 in this connection describes
the increase in the intracellular activity of one or more enzymes
or proteins in a microorganism which are coded by the corresponding
DNA, for example by increasing the number of copies of the gene or
genes, using a potent promoter or a gene which codes for a
corresponding enzyme or protein with a high activity, and
optionally combining these measures.
[0051] By enhancement measures, in particular over-expression, the
activity or concentration of the corresponding protein is in
general increased by at least 10%, 25%, 50%, 75%, 100%, 150%, 200%,
300%, 400% or 500%, up to a maximum of 1000% or 2000%, based on
that of the wild-type protein or the activity or concentration of
the protein in the starting microorganism.
[0052] Thus, for example, at the same time one or more of the genes
chosen from the group consisting of
[0053] the thrABC operon which codes for aspartate kinase,
homoserine dehydrogenase, homoserine kinase and threonine synthase
(U.S. Pat. No. 4,278,765),
[0054] the pyc gene of Corynebacterium glutamicum which codes for
pyruvate carboxylase (WO 99/18228),
[0055] the pps gene which codes for phosphoenol pyruvate synthase
(Molecular and General Genetics 231(2): 332-336 (1992)),
[0056] the ppc gene which codes for phosphoenol pyruvate
carboxylase (Gene 31: 279-283 (1984)),
[0057] the pntA and pntB genes which code for transhydrogenase
(European Journal of Biochemistry 158: 647-653 (1986)),
[0058] the rhtB gene which imparts homoserine resistance (EP-A-0
994 190),
[0059] the mqo gene which codes for malate:quinone oxidoreductase
(WO 02/06459),
[0060] the rhtC gene which imparts threonine resistance (EP-A-1 013
765),
[0061] the thrE gene of Corynebacterium glutamicum which codes for
the threonine export protein (WO 01/92545),
[0062] the gdhA gene which codes for glutamate dehydrogenase
(Nucleic Acids Research 11: 5257-5266 (1983); Gene 23: 199-209
(1983)),
[0063] the hns gene which codes for the DNA-binding protein HLP-II
(Molecular and General Genetics 212: 199-202 (1988)),
[0064] the pgm gene which codes for phosphoglucomutase (Journal of
Bacteriology 176: 5847-5851 (1994)),
[0065] the fba gene which codes for fructose biphosphate aldolase
(Biochemical Journal 257: 529-534 (1989)),
[0066] the ptsH gene of the ptsHIcrr operon which codes for the
phosphohistidine protein hexose phosphotransferase of the
phosphotransferase system PTS (Journal of Biological Chemistry 262:
16241-16253 (1987)),
[0067] the ptsI gene of the ptsHIcrr-operon which codes for enzyme
I of the phosphotransferase system PTS (Journal of Biological
Chemistry 262: 16241-16253 (1987)),
[0068] the crr gene of the ptsHIcrr operon which codes for the
glucose-specific IIA component of the phosphotransferase system PTS
(Journal of Biological Chemistry 262: 16241-16253 (1987)),
[0069] the ptsG gene which codes for the glucose-specific IIBC
component (journal of Biological Chemistry 261: 16398-16403
(1986)),
[0070] the lrp gene which codes for the regulator of the leucine
regulon (Journal of Biological Chemistry 266: 10768-10774
(1991)),
[0071] the mopB gene which codes for 10 Kd chaperone (Journal of
Biological Chemistry 261: 12414-12419 (1986)) and is also known by
the name groES,
[0072] the ahpC gene of the ahpCF operon which codes for the small
sub-unit of alkyl hydroperoxide reductase (Proceedings of the
National Academy of Sciences of the United States of America 92:
7617-7621 (1995)),
[0073] the ahpF gene of the ahpCF operon which codes for the large
sub-unit of alkyl hydroperoxide reductase (Proceedings of the
National Academy of Sciences USA 92: 7617-7621 (1995)),
[0074] the cysK gene which codes for cysteine synthase A (Journal
of Bacteriology 170: 3150-3157 (1988)),
[0075] the cysB gene which codes for the regulator of the cys
regulon (Journal of Biological Chemistry 262: 5999-6005
(1987)),
[0076] the cysJ gene of the cysJIH operon which codes for the
flavoprotein of NADPH sulfite-reductase (Journal of Biological
Chemistry 264: 15796-15808 (1989), Journal of Biological Chemistry
264: 15726-15737 (1989)),
[0077] the cysI gene of the cysJIH operon which codes for the
haemoprotein of NADPH sulfite reductase (Journal of Biological
Chemistry 264: 15796-15808 (1989), Journal of Biological Chemistry
264: 15726-15737 (1989)) and
[0078] the cysH gene of the cysJIH operon which codes for adenylyl
sulfate reductase (Journal of Biological Chemistry 264: 15796-15808
(1989), Journal of Biological Chemistry 264: 15726-15737
(1989))
[0079] can be enhanced, in particular over-expressed.
[0080] The use of endogenous genes is in general preferred.
"Endogenous genes" or "endogenous nucleotide sequences" are
understood as meaning the genes or nucleotide sequences present in
the population of a species.
[0081] It may furthermore be advantageous for the production of
L-amino acids, in particular L-threonine, in addition to
attenuation of the aceK gene, for one or more of the genes chosen
from the group consisting of
[0082] the tdh gene which codes for threonine dehydrogenase
(Journal of Bacteriology 169: 4716-4721 (1987)),
[0083] the mdh gene which codes for malate dehydrogenase (E.C.
1.1.1.37) (Archives in Microbiology 149: 36-42 (1987)),
[0084] the gene product of the open reading frame (orf) yjfA
(Accession Number AAC77180 of the National Center for Biotechnology
Information (NCBI, Bethesda, Md., USA)),
[0085] the gene product of the open reading frame (orf) ytfP
(Accession Number AAC77179 of the National Center for Biotechnology
Information (NCBI, Bethesda, Md., USA)),
[0086] the pckA gene which codes for the enzyme phosphoenol
pyruvate carboxykinase (Journal of Bacteriology 172: 7151-7156
(1990)),
[0087] the poxB gene which codes for pyruvate oxidase (Nucleic
Acids Research 14(13): 5449-5460 (1986)),
[0088] the aceA gene which codes for the enzyme isocitrate lyase
(Journal of Bacteriology 170: 4528-4536 (1988)),
[0089] the dgsA gene which codes for the DgsA regulator of the
phosphotransferase system (Bioscience, Biotechnology and
Biochemistry 59: 256-261 (1995)) and is also known under the name
of the mlc gene,
[0090] the fruR gene which codes for the fructose repressor
(Molecular and General Genetics 226: 332-336 (1991)) and is also
known under the name of the cra gene,
[0091] the rpoS gene which codes for the sigma.sup.38 factor (WO
01/05939) and is also known under the name of the katF gene,
[0092] the aspA gene which codes for aspartate ammonium lyase
(Nucleic Acids Research 13(6): 2063-2074 (1985)),
[0093] the aceB gene which codes for malate synthase A (Nucleic
Acids Research 16(19): 9342 (1988) and
[0094] the ugpB gene which codes for the periplasmic binding
protein of the sn-glycerol 3-phosphate transport system (Molecular
Microbiology 2(6): 767-775 (1988))
[0095] to be attenuated, in particular eliminated or for the
expression thereof to be reduced.
[0096] It may furthermore be advantageous for the production of
L-amino acids, in particular L-threonine, in addition to
attenuation of the aceK gene, to eliminate undesirable side
reactions (Nakayama: "Breeding of Amino Acid Producing
Microorganisms", in: Overproduction of Microbial Products,
Krumphanzl, Sikyta, Vanek (eds.), Academic Press, London, UK,
1982).
[0097] The microorganisms produced according to the invention can
be cultured in the batch process (batch culture), the fed batch
process (feed process) or the repeated fed batch process
(repetitive feed process). A summary of known culture methods is
described in the textbook by Chmiel (Bioprozesstechnik 1.
Einfuhrung in die Bioverfahrenstechnik [Bioprocess Technology 1.
Introduction to Bioprocess Technology (Gustav Fischer Verlag,
Stuttgart, 1991)) or in the textbook by Storhas (Bioreaktoren und
periphere Einrichtungen [Bioreactors and Peripheral Equipment]
(Vieweg Verlag, Braunschweig/Wiesbaden, 1994)).
[0098] The culture medium to be used must meet the requirements of
the particular strains in a suitable manner. Descriptions of
culture media for various microorganisms are contained in the
handbook "Manual of Methods for General Bacteriology" of the
American Society for Bacteriology (Washington D.C., USA, 1981).
[0099] Sugars and carbohydrates, such as e.g. glucose, sucrose,
lactose, fructose, maltose, molasses, starch and optionally
cellulose, oils and fats, such as e.g. soya oil, sunflower oil,
groundnut oil and coconut fat, fatty acids, such as e.g. palmitic
acid, stearic acid and linoleic acid, alcohols, such as e.g.
glycerol and ethanol, and organic acids, such as e.g. acetic acid,
can be used as the source of carbon. These substances can be used
individually or as a mixture.
[0100] Organic nitrogen-containing compounds, such as peptones,
yeast extract, meat extract, malt extract, corn steep liquor, soya
bean flour and urea, or inorganic compounds, such as ammonium
sulfate, ammonium chloride, ammonium phosphate, ammonium carbonate
and ammonium nitrate, can be used as the source of nitrogen. The
sources of nitrogen can be used individually or as a mixture.
[0101] Phosphoric acid, potassium dihydrogen phosphate or
dipotassium hydrogen phosphate or the corresponding
sodium-containing salts can be used as the source of phosphorus.
The culture medium must furthermore comprise salts of metals, such
as e.g. magnesium sulfate or iron sulfate, which are necessary for
growth. Finally, essential growth substances, such as amino acids
and vitamins, can be employed in addition to the abovementioned
substances. Suitable precursors can moreover be added to the
culture medium. The starting substances mentioned can be added to
the culture in the form of a single batch, or can be fed in during
the culture in a suitable manner.
[0102] Basic compounds, such as sodium hydroxide, potassium
hydroxide, ammonia or aqueous ammonia, or acid compounds, such as
phosphoric acid or sulfuric acid, can be employed in a suitable
manner to control the pH of the culture. Antifoams, such as e.g.
fatty acid polyglycol esters, can be employed to control the
development of foam. Suitable substances having a selective action,
e.g. antibiotics, can be added to the medium to maintain the
stability of plasmids. To maintain aerobic conditions, oxygen or
oxygen-containing gas mixtures, such as e.g. air, are introduced
into the culture. The temperature of the culture is usually
25.degree. C. to 45.degree. C., and preferably 30.degree. C. to
40.degree. C. Culturing is continued until a maximum of L-amino
acids or L-threonine has formed. This target is usually reached
within 10 hours to 160 hours.
[0103] The analysis of L-amino acids can be carried out by anion
exchange chromatography with subsequent ninhydrin derivation, as
described by Spackman et al. (Analytical Chemistry 30: 1190-1206
(1958)), or it can take place by reversed phase HPLC as described
by Lindroth et al. (Analytical Chemistry 51:. 1167-1174
(1979)).
[0104] The process according to the invention is used for the
fermentative preparation of L-amino acids, such as, for example,
L-threonine, L-isoleucine, L-valine, L-methionine, L-homoserine and
L-lysine, in particular L-threonine.
[0105] A pure culture of the Escherichia coli K-12 strain
DH5.alpha./pMAK705 was deposited as DSM 13720 on 8 Sep. 2000 at the
Deutsche Sammlung fur Mikroorganismen und Zellkulturen (DSMZ=German
Collection of Microorganisms and Cell Cultures, Braunschweig,
Germany) in accordance with the Budapest Treaty.
[0106] The present invention is explained in more detail in the
following with the aid of embodiment examples.
[0107] The isolation of plasmid DNA from Escherichia coli and all
techniques of restriction, ligation, Klenow and alkaline
phosphatase treatment are carried out by the method of Sambrook et
al. (Molecular Cloning--A Laboratory Manual (1989) Cold Spring
Harbor Laboratory Press). Unless described otherwise, the
transformation of Escherichia coli is carried out by the method of
Chung et al. (Proceedings of the National Academy of Sciences of
the United States of America, USA 86: 2172-2175 (1989)).
[0108] The incubation temperature for the preparation of strains
and transformants is 37.degree. C. Temperatures of 30.degree. C.
and 44.degree. C. are used in the gene replacement method of
Hamilton et al.
EXAMPLE 1
[0109] Construction of the Deletion Mutation of the aceK Gene
[0110] Parts of the gene regions lying upstream and downstream of
the aceK gene and parts of the 5' and 3' region of the aceK gene
are amplified from Escherichia coli K12 using the polymerase chain
reaction (PCR) and synthetic oligonucleotides. Starting from the
nucleotide sequence of the aceK gene and sequences lying upstream
and downstream in E. coli K12 MG1655 (SEQ ID No. 1, Accession
Number AE000474), the following PCR primers are synthesized (MWG
Biotech, Ebersberg, Germany):
1 aceK5'-1: 5' - CAACAACAACCGTTGCTGAC - 3' (SEQ ID No. 3) aceK5'-2:
5' - CAGTTCGTTCGCCACCTGTA - 3' (SEQ ID No. 4) aceK3'-1: 5' -
TGTTCCGCGCTGATTACTGG - 3' (SEQ ID No. 5) aceK3'-2: 5' -
GAATGGTGATGCCGACATGC - 3' (SEQ ID No. 6)
[0111] The chromosomal E. coli K12 MG1655 DNA employed for the PCR
is isolated according to the manufacturer's instructions with
"Qiagen Genomic-tips 100/G" (QIAGEN, Hilden, Germany). A DNA
fragment approx. 800 bp in size from the 5' region of the aceK gene
region (called aceK5') and a DNA fragment approx. 800 bp in size
from the 3' region of the aceK gene region (called aceK3') can be
amplified with the specific primers under standard PCR conditions
(Innis et al. (1990) PCR Protocols. A Guide to Methods and
Applications, Academic Press) with Taq-DNA polymerase (Gibco-BRL,
Eggenstein, Germany). The PCR products are each ligated with the
vector pCR2.1-TOPO (TOPO TA Cloning Kit, Invitrogen, Groningen, The
Netherlands) in accordance with the manufacturer's instructions and
transformed into the E. coli strain TOP10F'. Selection of
plasmid-carrying cells takes place on LB agar, to which 50 .mu.g/ml
ampicillin are added. After isolation of the plasmid DNA, the
vector pCR2.1-TOPOaceK3' is cleaved with the restriction enzymes
XbaI and Ecl136II. The aceK3' fragment is isolated after separation
in 0.8% agarose gel with the aid of the QIAquick Gel Extraction Kit
(QIAGEN, Hilden, Germany). After isolation of the plasmid DNA the
vector pCR2.1-TOPOaceK5' is cleaved with the enzymes EcoRV and XbaI
and ligated with the aceK3' fragment isolated. The E. coli strain
DH5.alpha. is transformed with the ligation batch and
plasmid-carrying cells are selected on LB agar, to which 50
.mu.g/ml ampicillin are added. After isolation of the plasmid DNA
those plasmids in which the mutagenic DNA sequence shown in SEQ ID
No. 7 is cloned are detected by control cleavage with the enzymes
BamHI, SpeI and PvuI. One of the plasmids is called
pCR2.1-TOPO.DELTA.aceK (=pCR2.1-TOPOdeltaaceK).
EXAMPLE 2
[0112] Construction of the Replacement Vector
pBAK705.DELTA.aceK
[0113] The .DELTA.aceK allele described in example 1 is isolated
from the vector pCR2.1-TOPO.DELTA.aceK after restriction with the
enzymes KpnI and XbaI and separation in 0.8% agarose gel, and
ligated with the plasmid pMAK705 (Hamilton et al., Journal of
Bacteriology 171: 4617-4622 (1989)), which has been digested with
the enzymes KpnI and XbaI. The ligation batch is transformed in
DH5.alpha. and plasmid-carrying cells are selected on LB agar, to
which 20 .mu.g/ml chloramphenicol are added. Successful cloning is
demonstrated after isolation of the plasmid DNA and cleavage with
the enzymes BamHI, MluI and PauI. The replacement vector formed,
pMAK705.DELTA.aceK (=pMAK705deltaaceK), is shown in FIG. 1.
EXAMPLE 3
[0114] Position-Specific Mutagenesis of the aceK Gene in the E.
coli Strain MG442
[0115] The L-threonine-producing E. coli strain MG442 is described
in the patent specification U.S. Pat. No. 4,278,765 and deposited
as CMIM B-1628 at the Russian National Collection for Industrial
Microorganisms (VKPM, Moscow, Russia).
[0116] For replacement of the chromosomal aceK gene with the
plasmid-coded deletion construct, MG442 is transformed with the
plasmid pMAK705.DELTA.aceK. The gene replacement is carried out
using the selection method described by Hamilton et al. (Journal of
Bacteriology 171: 4617-4622 (1989)) and is verified by standard PCR
methods (Innis et al. (1990) PCR Protocols. A Guide to Methods and
Applications, Academic Press) with the following oligonucleotide
primers:
2 aceK5'-1: 5' - CAACAACAACCGTTGCTGAC - 3' (SEQ ID No. 3) aceK3'-2:
5' - GAATGGTGATGCCGACATGC - 3' (SEQ ID No. 6)
[0117] After replacement has taken place, MG442 contains the form
of the .DELTA.aceK allele shown in SEQ ID No. 8. The strain
obtained is called MG442.DELTA.aceK.
EXAMPLE 4
[0118] Preparation of L-Threonine with the Strain
MG442.DELTA.aceK
[0119] MG442.DELTA.aceK is multiplied on minimal medium with the
following composition: 3.5 g/l Na.sub.2HPO.sub.4.2H.sub.20, 1.5 g/l
KH.sub.2PO.sub.4, 1 g/l NH.sub.4Cl, 0.1 g/l MgSO.sub.4.7H.sub.2O, 2
g/l glucose, 20 g/l agar. The formation of L-threonine is checked
in batch cultures of 10 ml contained in 100 ml conical flasks. For
this, 10 ml of preculture medium of the following composition: 2
g/l yeast extract, 10 g/l (NH.sub.4).sub.2SO.sub.4, 1 g/l
KH.sub.2PO.sub.4, 0.5 g/l MgSO.sub.4.7H.sub.2O, 15 g/l CaCO.sub.3,
20 g/l glucose are inoculated and the batch is incubated for 16
hours at 37.degree. C. and 180 rpm on an ESR incubator from Kuhner
AG (Birsfelden, Switzerland). 250 .mu.l of this preculture are
transinoculated into 10 ml of production medium (25 g/l
(NH.sub.4).sub.2SO.sub.4, 2 g/l KH.sub.2PO.sub.4, 1 g/l
MgSO.sub.4.7H.sub.2O, 0.03 g/l FeSO.sub.4*7H.sub.2O, 0.018 g/l
MnSO.sub.4*1H.sub.2O, 30 g/l CaCO.sub.3, 20 g/l glucose) and the
batch is incubated for 48 hours at 37.degree. C. After the
incubation the optical density (OD) of the culture suspension is
determined with an LP2W photometer from Dr. Lange (Dusseldorf,
Germany) at a measurement wavelength of 660 nm.
[0120] The concentration of L-threonine formed is then determined
in the sterile-filtered culture supernatant with an amino acid
analyzer from Eppendorf-BioTronik (Hamburg, Germany) by ion
exchange chromatography and post-column reaction with ninhydrin
detection.
[0121] The result of the experiment is shown in Table 1.
3TABLE 1 OD L-Threonine Strain (660 nm) g/l MG442 6.0 1.5
MG442.DELTA.aceK 5.8 1.7
BRIEF DESCRIPTION OF THE FIGURES
[0122] FIG. 1: pMAK705.DELTA.aceK (=pMAK705deltaaceK)
[0123] The length data are to be understood as approx. data. The
abbreviations and designations used have the following meaning:
[0124] cat: Chloramphenicol resistance gene
[0125] rep-ts: Temperature-sensitive replication region of the
plasmid pSC101
[0126] aceK5': Part of the 5' region of the aceK gene and the
region lying upstream
[0127] aceK3': Part of the 3' region of the aceK gene and the
region lying downstream
[0128] The abbreviations for the restriction enzymes have the
following meaning
[0129] BamHI: Restriction endonuclease from Bacillus
amyloliquefaciens H
[0130] KpnI: Restriction endonuclease from Klebsiella
pneumoniae
[0131] MluI: Restriction endonuclease from Micrococcus luteus IFO
12992
[0132] PauI: Restriction endonuclease from Paracoccus
alcaliphilus
[0133] XbaI: Restriction endonuclease from Xanthomonas badrii
Sequence CWU 1
1
8 1 2613 DNA Escherichia coli CDS (182)..(1918) 1 caacaacaac
cgttgctgac tgtaggccgg ataaggcgtt cacgccgcat ccggcaatcg 60
gtgcacgatg cctgatgcga cgcttgcgcg tcttatcatg cctacagccg ttgccgaacg
120 taggctggat aaggcgttta cgccgcatcc ggcaattctc tgctcctgat
gagggcgcta 180 a atg ccg cgt ggc ctg gaa tta ttg att gct caa acc
att ttg caa ggc 229 Met Pro Arg Gly Leu Glu Leu Leu Ile Ala Gln Thr
Ile Leu Gln Gly 1 5 10 15 ttc gat gct cag tat ggt cga ttc ctc gaa
gtg acc tcc ggt gcg cag 277 Phe Asp Ala Gln Tyr Gly Arg Phe Leu Glu
Val Thr Ser Gly Ala Gln 20 25 30 cag cgt ttc gaa cag gcc gac tgg
cat gct gtc cag cag gcg atg aaa 325 Gln Arg Phe Glu Gln Ala Asp Trp
His Ala Val Gln Gln Ala Met Lys 35 40 45 aac cgt atc cat ctt tac
gat cat cac gtt ggt ctg gtc gtg gag caa 373 Asn Arg Ile His Leu Tyr
Asp His His Val Gly Leu Val Val Glu Gln 50 55 60 ctg cgc tgc att
act aac ggc caa agt acg gac gcg gca ttt tta cta 421 Leu Arg Cys Ile
Thr Asn Gly Gln Ser Thr Asp Ala Ala Phe Leu Leu 65 70 75 80 cgt gtt
aaa gag cat tac acc cgg ctg ttg ccg gat tac ccg cgc ttc 469 Arg Val
Lys Glu His Tyr Thr Arg Leu Leu Pro Asp Tyr Pro Arg Phe 85 90 95
gag att gcg gag agc ttt ttt aac tcc gtg tac tgt cgg tta ttt gac 517
Glu Ile Ala Glu Ser Phe Phe Asn Ser Val Tyr Cys Arg Leu Phe Asp 100
105 110 cac cgc tcg ctt act ccc gag cgg ctt ttt atc ttt agc tct cag
cca 565 His Arg Ser Leu Thr Pro Glu Arg Leu Phe Ile Phe Ser Ser Gln
Pro 115 120 125 gag cgc cgc ttt cgt acc att ccc cgc ccg ctg gcg aaa
gac ttt cac 613 Glu Arg Arg Phe Arg Thr Ile Pro Arg Pro Leu Ala Lys
Asp Phe His 130 135 140 ccc gat cac ggc tgg gaa tct cta ctg atg cgc
gtt atc agc gac cta 661 Pro Asp His Gly Trp Glu Ser Leu Leu Met Arg
Val Ile Ser Asp Leu 145 150 155 160 ccg ctg cgc ctg cgc tgg cag aat
aaa agc cgt gac atc cat tac att 709 Pro Leu Arg Leu Arg Trp Gln Asn
Lys Ser Arg Asp Ile His Tyr Ile 165 170 175 att cgc cat ctg acg gaa
acg ctg ggg aca gac aac ctc gcg gaa agt 757 Ile Arg His Leu Thr Glu
Thr Leu Gly Thr Asp Asn Leu Ala Glu Ser 180 185 190 cat tta cag gtg
gcg aac gaa ctg ttt tac cgc aat aaa gcc gcc tgg 805 His Leu Gln Val
Ala Asn Glu Leu Phe Tyr Arg Asn Lys Ala Ala Trp 195 200 205 ctg gta
ggc aaa ctg atc aca cct tcc ggc aca ttg cca ttt ttg ctg 853 Leu Val
Gly Lys Leu Ile Thr Pro Ser Gly Thr Leu Pro Phe Leu Leu 210 215 220
ccg atc cac cag acg gac gac ggc gag tta ttt att gat acc tgc ctg 901
Pro Ile His Gln Thr Asp Asp Gly Glu Leu Phe Ile Asp Thr Cys Leu 225
230 235 240 acg acg acc gcc gaa gcg agc att gtt ttt ggc ttt gcg cgt
tct tat 949 Thr Thr Thr Ala Glu Ala Ser Ile Val Phe Gly Phe Ala Arg
Ser Tyr 245 250 255 ttt atg gtt tat gcg ccg ctg ccc gca gcg ctg gtc
gag tgg cta cgg 997 Phe Met Val Tyr Ala Pro Leu Pro Ala Ala Leu Val
Glu Trp Leu Arg 260 265 270 gaa att ctg cca ggt aaa acc acc gct gaa
ttg tat atg gct atc ggc 1045 Glu Ile Leu Pro Gly Lys Thr Thr Ala
Glu Leu Tyr Met Ala Ile Gly 275 280 285 tgc cag aag cac gcc aaa acc
gaa agc tac cgc gaa tat ctc gtt tat 1093 Cys Gln Lys His Ala Lys
Thr Glu Ser Tyr Arg Glu Tyr Leu Val Tyr 290 295 300 cta cag ggc tgt
aat gag cag ttc att gaa gcg ccg ggt att cgt gga 1141 Leu Gln Gly
Cys Asn Glu Gln Phe Ile Glu Ala Pro Gly Ile Arg Gly 305 310 315 320
atg gtg atg ttg gtg ttt acg ctg ccg ggc ttt gat cgg gta ttc aaa
1189 Met Val Met Leu Val Phe Thr Leu Pro Gly Phe Asp Arg Val Phe
Lys 325 330 335 gtc atc aaa gac agg ttc gcg ccg cag aaa gag atg tct
gcc gct cac 1237 Val Ile Lys Asp Arg Phe Ala Pro Gln Lys Glu Met
Ser Ala Ala His 340 345 350 gtt cgt gcc tgc tat caa ctg gtg aaa gag
cac gat cgc gtg ggc cga 1285 Val Arg Ala Cys Tyr Gln Leu Val Lys
Glu His Asp Arg Val Gly Arg 355 360 365 atg gcg gac acc cag gag ttt
gaa aac ttt gtg ctg gag aag cgg cat 1333 Met Ala Asp Thr Gln Glu
Phe Glu Asn Phe Val Leu Glu Lys Arg His 370 375 380 att tcc ccg gca
tta atg gaa tta ctg ctt cag gaa gca gcg gaa aaa 1381 Ile Ser Pro
Ala Leu Met Glu Leu Leu Leu Gln Glu Ala Ala Glu Lys 385 390 395 400
atc acc gat ctc ggc gaa caa att gtg att cgc cat ctt tat att gag
1429 Ile Thr Asp Leu Gly Glu Gln Ile Val Ile Arg His Leu Tyr Ile
Glu 405 410 415 cgg cgg atg gtg ccg ctc aat atc tgg ctg gaa caa gtg
gaa ggt cag 1477 Arg Arg Met Val Pro Leu Asn Ile Trp Leu Glu Gln
Val Glu Gly Gln 420 425 430 cag ttg cgc gac gcc att gaa gaa tac ggt
aac gct att cgc cag ctt 1525 Gln Leu Arg Asp Ala Ile Glu Glu Tyr
Gly Asn Ala Ile Arg Gln Leu 435 440 445 gcc gct gct aac att ttc cct
ggc gac atg ctg ttt aaa aac ttc ggt 1573 Ala Ala Ala Asn Ile Phe
Pro Gly Asp Met Leu Phe Lys Asn Phe Gly 450 455 460 gtc acc cgt cac
ggg cgt gtg gtt ttt tat gat tac gat gaa att tgc 1621 Val Thr Arg
His Gly Arg Val Val Phe Tyr Asp Tyr Asp Glu Ile Cys 465 470 475 480
tac atg acg gaa gtg aat ttc cgc gac atc ccg ccg ccg cgc tat ccg
1669 Tyr Met Thr Glu Val Asn Phe Arg Asp Ile Pro Pro Pro Arg Tyr
Pro 485 490 495 gaa gac gaa ctt gcc agc gaa ccg tgg tac agc gtc tcg
ccg ggc gat 1717 Glu Asp Glu Leu Ala Ser Glu Pro Trp Tyr Ser Val
Ser Pro Gly Asp 500 505 510 gtt ttc ccg gaa gag ttt cgc cac tgg cta
tgc gcc gac ccg cgt att 1765 Val Phe Pro Glu Glu Phe Arg His Trp
Leu Cys Ala Asp Pro Arg Ile 515 520 525 ggt ccg ctg ttt gaa gag atg
cac gcc gac ctg ttc cgc gct gat tac 1813 Gly Pro Leu Phe Glu Glu
Met His Ala Asp Leu Phe Arg Ala Asp Tyr 530 535 540 tgg cgc gca cta
caa aac cgc ata cgt gaa ggg cat gtg gaa gat gtt 1861 Trp Arg Ala
Leu Gln Asn Arg Ile Arg Glu Gly His Val Glu Asp Val 545 550 555 560
tat gcg tat cgg cgc agg caa aga ttt agc gta cgg tat ggg gag atg
1909 Tyr Ala Tyr Arg Arg Arg Gln Arg Phe Ser Val Arg Tyr Gly Glu
Met 565 570 575 ctt ttt tga gtaaagcttc catataattt ttctccgcaa
tgtatcgagg 1958 Leu Phe gttatccgta aagccaaagc tttcagccat cttatttaat
gtattaagga ttaattcagc 2018 aataacccgg tgaccaaatt caaaagccaa
ctcaaaggca gagtattttt gtggggcttt 2078 gtgttgccaa aaatccataa
tatcttcagc ggtaaatcca aacaggcgtg catggtcaga 2138 taaagcaaga
taaaccgtct ctacaacatt ttgttgttta tgctgtatcg ctgaaaacaa 2198
accgggatat tcattagaat tatttgccag gaggaggggc ttcatatttt ttttatcgaa
2258 tttaaacgta ttaaacagag tgggtaatgc gttaaaaata gtattaataa
cgttcatgtg 2318 tccgcgctgc atggccataa acaaacccgt gtcgcgcgca
agacttttag cggtcagaag 2378 atctacaata tcggaagctg aaatgttaat
ttcctgggct aggctgggca atgcttcaag 2438 aataactttc acgatatcgc
tatgtccatt ttgcatcgcc agatatagtc ctgggcaacc 2498 ataaaaatcc
tttgccttca ggagatcgag tacctgttct ttagtcaaat gacatgtgcg 2558
aattaacaaa ggtaacgcgt tcaaaacaat tttcagcatg tcggcatcac cattc 2613 2
578 PRT Escherichia coli 2 Met Pro Arg Gly Leu Glu Leu Leu Ile Ala
Gln Thr Ile Leu Gln Gly 1 5 10 15 Phe Asp Ala Gln Tyr Gly Arg Phe
Leu Glu Val Thr Ser Gly Ala Gln 20 25 30 Gln Arg Phe Glu Gln Ala
Asp Trp His Ala Val Gln Gln Ala Met Lys 35 40 45 Asn Arg Ile His
Leu Tyr Asp His His Val Gly Leu Val Val Glu Gln 50 55 60 Leu Arg
Cys Ile Thr Asn Gly Gln Ser Thr Asp Ala Ala Phe Leu Leu 65 70 75 80
Arg Val Lys Glu His Tyr Thr Arg Leu Leu Pro Asp Tyr Pro Arg Phe 85
90 95 Glu Ile Ala Glu Ser Phe Phe Asn Ser Val Tyr Cys Arg Leu Phe
Asp 100 105 110 His Arg Ser Leu Thr Pro Glu Arg Leu Phe Ile Phe Ser
Ser Gln Pro 115 120 125 Glu Arg Arg Phe Arg Thr Ile Pro Arg Pro Leu
Ala Lys Asp Phe His 130 135 140 Pro Asp His Gly Trp Glu Ser Leu Leu
Met Arg Val Ile Ser Asp Leu 145 150 155 160 Pro Leu Arg Leu Arg Trp
Gln Asn Lys Ser Arg Asp Ile His Tyr Ile 165 170 175 Ile Arg His Leu
Thr Glu Thr Leu Gly Thr Asp Asn Leu Ala Glu Ser 180 185 190 His Leu
Gln Val Ala Asn Glu Leu Phe Tyr Arg Asn Lys Ala Ala Trp 195 200 205
Leu Val Gly Lys Leu Ile Thr Pro Ser Gly Thr Leu Pro Phe Leu Leu 210
215 220 Pro Ile His Gln Thr Asp Asp Gly Glu Leu Phe Ile Asp Thr Cys
Leu 225 230 235 240 Thr Thr Thr Ala Glu Ala Ser Ile Val Phe Gly Phe
Ala Arg Ser Tyr 245 250 255 Phe Met Val Tyr Ala Pro Leu Pro Ala Ala
Leu Val Glu Trp Leu Arg 260 265 270 Glu Ile Leu Pro Gly Lys Thr Thr
Ala Glu Leu Tyr Met Ala Ile Gly 275 280 285 Cys Gln Lys His Ala Lys
Thr Glu Ser Tyr Arg Glu Tyr Leu Val Tyr 290 295 300 Leu Gln Gly Cys
Asn Glu Gln Phe Ile Glu Ala Pro Gly Ile Arg Gly 305 310 315 320 Met
Val Met Leu Val Phe Thr Leu Pro Gly Phe Asp Arg Val Phe Lys 325 330
335 Val Ile Lys Asp Arg Phe Ala Pro Gln Lys Glu Met Ser Ala Ala His
340 345 350 Val Arg Ala Cys Tyr Gln Leu Val Lys Glu His Asp Arg Val
Gly Arg 355 360 365 Met Ala Asp Thr Gln Glu Phe Glu Asn Phe Val Leu
Glu Lys Arg His 370 375 380 Ile Ser Pro Ala Leu Met Glu Leu Leu Leu
Gln Glu Ala Ala Glu Lys 385 390 395 400 Ile Thr Asp Leu Gly Glu Gln
Ile Val Ile Arg His Leu Tyr Ile Glu 405 410 415 Arg Arg Met Val Pro
Leu Asn Ile Trp Leu Glu Gln Val Glu Gly Gln 420 425 430 Gln Leu Arg
Asp Ala Ile Glu Glu Tyr Gly Asn Ala Ile Arg Gln Leu 435 440 445 Ala
Ala Ala Asn Ile Phe Pro Gly Asp Met Leu Phe Lys Asn Phe Gly 450 455
460 Val Thr Arg His Gly Arg Val Val Phe Tyr Asp Tyr Asp Glu Ile Cys
465 470 475 480 Tyr Met Thr Glu Val Asn Phe Arg Asp Ile Pro Pro Pro
Arg Tyr Pro 485 490 495 Glu Asp Glu Leu Ala Ser Glu Pro Trp Tyr Ser
Val Ser Pro Gly Asp 500 505 510 Val Phe Pro Glu Glu Phe Arg His Trp
Leu Cys Ala Asp Pro Arg Ile 515 520 525 Gly Pro Leu Phe Glu Glu Met
His Ala Asp Leu Phe Arg Ala Asp Tyr 530 535 540 Trp Arg Ala Leu Gln
Asn Arg Ile Arg Glu Gly His Val Glu Asp Val 545 550 555 560 Tyr Ala
Tyr Arg Arg Arg Gln Arg Phe Ser Val Arg Tyr Gly Glu Met 565 570 575
Leu Phe 3 20 DNA artificial sequence Synthetic DNA 3 caacaacaac
cgttgctgac 20 4 20 DNA artificial sequence Synthetic DNA 4
cagttcgttc gccacctgta 20 5 20 DNA artificial sequence Synthetic DNA
5 tgttccgcgc tgattactgg 20 6 20 DNA artificial sequence Synthetic
DNA 6 gaatggtgat gccgacatgc 20 7 1763 DNA Escherichia coli
misc_feature (1)..(50) technical DNA/residues of polylinker
sequence 7 cgagctcgga tccactagta acggccgcca gtgtgctgga attcgccctt
caacaacaac 60 cgttgctgac tgtaggccgg ataaggcgtt cacgccgcat
ccggcaatcg gtgcacgatg 120 cctgatgcga cgcttgcgcg tcttatcatg
cctacagccg ttgccgaacg taggctggat 180 aaggcgttta cgccgcatcc
ggcaattctc tgctcctgat gagggcgcta aatgccgcgt 240 ggcctggaat
tattgattgc tcaaaccatt ttgcaaggct tcgatgctca gtatggtcga 300
ttcctcgaag tgacctccgg tgcgcagcag cgtttcgaac aggccgactg gcatgctgtc
360 cagcaggcga tgaaaaaccg tatccatctt tacgatcatc acgttggtct
ggtcgtggag 420 caactgcgct gcattactaa cggccaaagt acggacgcgg
catttttact acgtgttaaa 480 gagcattaca cccggctgtt gccggattac
ccgcgcttcg agattgcgga gagctttttt 540 aactccgtgt actgtcggtt
atttgaccac cgctcgctta ctcccgagcg gctttttatc 600 tttagctctc
agccagagcg ccgctttcgt accattcccc gcccgctggc gaaagacttt 660
caccccgatc acggctggga atctctactg atgcgcgtta tcagcgacct accgctgcgc
720 ctgcgctggc agaataaaag ccgtgacatc cattacatta ttcgccatct
gacggaaacg 780 ctggggacag acaacctcgc ggaaagtcat ttacaggtgg
cgaacgaact gaagggcgaa 840 ttctgcagat ctcggatcca ctagtaacgg
ccgccagtgt gctggaattc ggctttgttc 900 cgcgctgatt actggcgcgc
actacaaaac cgcatacgtg aagggcatgt ggaagatgtt 960 tatgcgtatc
ggcgcaggca aagatttagc gtacggtatg gggagatgct tttttgagta 1020
aagcttccat ataatttttc tccgcaatgt atcgagggtt atccgtaaag ccaaagcttt
1080 cagccatctt atttaatgta ttaaggatta attcagcaat aacccggtga
ccaaattcaa 1140 aagccaactc aaaggcagag tatttttgtg gggctttgtg
ttgccaaaaa tccataatat 1200 cttcagcggt aaatccaaac aggcgtgcat
ggtcagataa agcaagataa accgtctcta 1260 caacattttg ttgtttatgc
tgtatcgctg aaaacaaacc gggatattca ttagaattat 1320 ttgccaggag
gaggggcttc atattttttt tatcgaattt aaacgtatta aacagagtgg 1380
gtaatgcgtt aaaaatagta ttaataacgt tcatgtgtcc gcgctgcatg gccataaaca
1440 aacccgtgtc gcgcgcaaga cttttagcgg tcagaagatc tacaatatcg
gaagctgaaa 1500 tgttaatttc ctgggctagg ctgggcaatg cttcaagaat
aactttcacg atatcgctat 1560 gtccattttg catcgccaga tatagtcctg
ggcaaccata aaaatccttt gccttcagga 1620 gatcgagtac ctgttcttta
gtcaaatgac atgtgcgaat taacaaaggt aacgcgttca 1680 aaacaatttt
cagcatgtcg gcatcaccat tcaagccgaa ttctgcagat atccatcaca 1740
ctggcggccg ctcgagcatg cat 1763 8 786 DNA Escherichia coli
misc_feature (1)..(3) start codon of the delta-aceK allele 8
atgccgcgtg gcctggaatt attgattgct caaaccattt tgcaaggctt cgatgctcag
60 tatggtcgat tcctcgaagt gacctccggt gcgcagcagc gtttcgaaca
ggccgactgg 120 catgctgtcc agcaggcgat gaaaaaccgt atccatcttt
acgatcatca cgttggtctg 180 gtcgtggagc aactgcgctg cattactaac
ggccaaagta cggacgcggc atttttacta 240 cgtgttaaag agcattacac
ccggctgttg ccggattacc cgcgcttcga gattgcggag 300 agctttttta
actccgtgta ctgtcggtta tttgaccacc gctcgcttac tcccgagcgg 360
ctttttatct ttagctctca gccagagcgc cgctttcgta ccattccccg cccgctggcg
420 aaagactttc accccgatca cggctgggaa tctctactga tgcgcgttat
cagcgaccta 480 ccgctgcgcc tgcgctggca gaataaaagc cgtgacatcc
attacattat tcgccatctg 540 acggaaacgc tggggacaga caacctcgcg
gaaagtcatt tacaggtggc gaacgaactg 600 aagggcgaat tctgcagatc
tcggatccac tagtaacggc cgccagtgtg ctggaattcg 660 gctttgttcc
gcgctgatta ctggcgcgca ctacaaaacc gcatacgtga agggcatgtg 720
gaagatgttt atgcgtatcg gcgcaggcaa agatttagcg tacggtatgg ggagatgctt
780 ttttga 786
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