U.S. patent application number 10/051852 was filed with the patent office on 2002-10-10 for anticoagulant agents useful in treatment of thrombosis.
This patent application is currently assigned to SmithKline Beecham Corporation. Invention is credited to Blackburn, Michael Neal, Church, William Robert, Feuerstein, Giora Zeev, Gross, Mitchell Stuart, Nichols, Andrew John, Padlan, Eduardo Agustin, Patel, Arunbhai Haribhai, Sylvester, Daniel Robert.
Application Number | 20020146411 10/051852 |
Document ID | / |
Family ID | 26680794 |
Filed Date | 2002-10-10 |
United States Patent
Application |
20020146411 |
Kind Code |
A1 |
Blackburn, Michael Neal ; et
al. |
October 10, 2002 |
Anticoagulant agents useful in treatment of thrombosis
Abstract
Monoclonal antibodies directed against coagulation factors and
their use in inhibiting thrombosis are disclosed.
Inventors: |
Blackburn, Michael Neal;
(Phoenixville, PA) ; Church, William Robert;
(Burlington, VT) ; Feuerstein, Giora Zeev;
(Wynnewood, PA) ; Gross, Mitchell Stuart; (Wayne,
PA) ; Nichols, Andrew John; (Chester Springs, PA)
; Padlan, Eduardo Agustin; (Kensington, MD) ;
Patel, Arunbhai Haribhai; (Phoenixville, PA) ;
Sylvester, Daniel Robert; (Phoenixville, PA) |
Correspondence
Address: |
GLAXOSMITHKLINE
Corporate Intellectual Property - UW2220
P.O. Box 1539
King of Prussia
PA
19406-0939
US
|
Assignee: |
SmithKline Beecham
Corporation
|
Family ID: |
26680794 |
Appl. No.: |
10/051852 |
Filed: |
January 17, 2002 |
Related U.S. Patent Documents
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
|
|
10051852 |
Jan 17, 2002 |
|
|
|
09344050 |
Jun 25, 1999 |
|
|
|
6391299 |
|
|
|
|
09344050 |
Jun 25, 1999 |
|
|
|
08783853 |
Jan 16, 1997 |
|
|
|
6005091 |
|
|
|
|
60010108 |
Jan 17, 1996 |
|
|
|
60029119 |
Oct 24, 1996 |
|
|
|
Current U.S.
Class: |
424/133.1 ;
435/320.1; 435/326; 435/69.1; 514/170; 530/388.26; 536/23.53 |
Current CPC
Class: |
A61P 7/00 20180101; C07K
16/36 20130101; A61K 2039/505 20130101; C07K 16/40 20130101; A61K
39/395 20130101; C07K 2317/92 20130101; C07K 2317/76 20130101; C07K
2317/24 20130101; A61K 38/00 20130101; A61P 7/02 20180101; A61K
39/395 20130101; A61K 2300/00 20130101 |
Class at
Publication: |
424/133.1 ;
530/388.26; 514/170; 435/69.1; 435/326; 435/320.1; 536/23.53 |
International
Class: |
A61K 039/395; C07H
021/04; C12P 021/02; C12N 005/06; C07K 016/40 |
Claims
1. A method for inhibiting thrombosis in an animal comprising
administering an effective dose of an anti-coagulation factor
monoclonal antibody having self-limiting neutralizing activity.
2. The method of claim 1 further comprising administering
acetylsalicylic acid in combination with the anti-coagulation
factor monoclonal antibody.
3. The method of claim 1 or 2 wherein the coagulation factor is
from the intrinsic or common coagulation pathway.
4. The method of claim 3 wherein the anti-coagulation factor
monoclonal antibody is an anti-Factor IX, anti-Factor IXa,
anti-Factor X, anti-Factor Xa, anti-Factor XI, anti-Factor XIa,
anti-Factor VIII, anti-Factor VIIIa, anti-Factor V, anti-Factor Va,
anti-Factor VII, anti-Factor VIIa or anti-thrombin.
5. The method of claim 3 wherein the anti-coagulation factor
monoclonal antibody is an anti-Factor IX.
6. The method of claim 5 wherein the anti-Factor IX monoclonal
antibody has the identifying characteristics of SB 249413, SB
249415, SB 249416, SB 2249417, SB 257731 or SB 257732.
7. The method of claim 5 wherein the anti-Factor IX monoclonal
antibody has the identifying characteristics of SB 249417.
8. The method of claim 1 or 2 wherein aPTT is prolonged without
significant prolongation of PT.
9. The method of claim 4 wherein aPTT is about 35 seconds to about
100 seconds.
10. The method of claim 1 or 2 wherein the thrombosis is associated
with myocardial infarction, unstable angina, atrial fibrillation,
stroke, renal damage, pulmonary embolism, deep vein thrombosis,
percutaneous translumenal coronary angioplasty, disseminated
intravascular coagulation, sepsis, artificial organs, shunts or
prostheses.
11. An anti-coagulation factor monoclonal antibody having
self-limiting neutralizing activity against the coagulation
factor.
12. The monoclonal antibody of claim 11 wherein the coagulation
factor is from the intrinsic or common coagulation pathway.
13. The monoclonal antibody of claim 12 wherein the
anti-coagulation factor monoclonal antibody is an anti-Factor IX,
anti-Factor IXa, anti-Factor X, anti-Factor Xa, anti-Factor XI,
anti-Factor XIa, anti-Factor VIII, anti-Factor VIIIa, anti-Factor
V, anti-Factor Va, anti-Factor VII, anti-Factor VIIa or
thrombin.
14. The monoclonal antibody of claim 12 wherein the
anti-coagulation factor monoclonal antibody is an anti-Factor
IX.
15. The monoclonal antibody of claim 14 having the identifying
characteristics of SB 249413, SB 249415, SB 249416, SB 249417, SB
257731, SB 257732, 9E4(2)F4 or 11G4(1)B9.
16. The monoclonal antibody of claim 14 having the identifying
characteristics of SB 249417.
17. A hybridoma having the identifying characteristics of cell line
9E4(2)F4 or 11G4(1)B9.
18. A neutralizing Fab fragment or F(ab').sub.2 fragment thereof,
produced by deleting the Fc region of the monoclonal antibody of
claim 11.
19. A neutralizing Fab fragment or F(ab').sub.2 fragment thereof,
produced by chain shuffling whereby the Fd heavy chain of the
monoclonal antibody of claim 11 is expressed in a murine light
chain filamentous phage Fab display library.
20. A neutralizing Fab fragment or F(ab').sub.2 fragment thereof,
produced by chain shuffling whereby the light chain of the
monoclonal antibody of claim 11 is expressed in a murine heavy
chain filamentous phage Fab display library.
21. An immmunoglobulin heavy chain complementarity determining
region, the amino acid sequence of which is selected from the group
consisting of SEQ ID NOs: 8, 9 and 10.
22. A nucleic acid molecule encoding the immunoglobulin
complementarity determining region of claim 21.
23. An immmunoglobulin light chain complementarity determining
region, the amino acid sequence of which is selected from the group
consisting of SEQ ID NOs: 12, 13 and 14.
24. A nucleic acid molecule encoding the immunoglobulin
complementarity determining region of claim 23.
25. An altered antibody comprising a heavy chain and a light chain,
wherein the framework regions of said heavy and light chains are
derived from at least one selected antibody and the amino acid
sequences of the complementarity determining regions of each said
chain are derived from the monoclonal antibody of claim 11.
26. The altered antibody of claim 25 which is humanized.
27. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 31, 52, or 89.
28. The humanized antibody of claim 26 wherein the light chain has
the amino acid sequence set forth in SEQ ID NO: 44, 57, 62, 74, 78
or 99.
29. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 31 and the light
chain has the amino acid sequence set forth in SEQ ID NO: 44.
30. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 52 and the light
chain has the amino acid sequence set forth in SEQ ID NO: 57.
31. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 52 and the light
chain has the amino acid sequence set forth in SEQ ID NO: 62.
32. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 52 and the light
chain has the amino acid sequence set forth in SEQ ID NO: 74.
33. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 52 and the light
chain has the amino acid sequence set forth in SEQ ID NO: 78.
34. The humanized antibody of claim 26 wherein the heavy chain has
the amino acid sequence set forth in SEQ ID NO: 89 and the light
chain has the amino acid sequence set forth in SEQ ID NO: 99.
35. A chimeric antibody comprising a heavy chain and a light chain,
said antibody characterized by inhibiting the function of intrinsic
or common pathway coagulation factors in a self-limiting manner,
wherein thrombosis is inhibited and limited modulation of
coagulation is produced, wherein the constant regions of said heavy
and light chains are derived from at least one selected antibody
and the amino acid sequences of the variable regions of each said
chain are derived from the monoclonal antibody of claim 11.
36. The antibody according to claim 35 wherein the constant regions
are selected from human immunoglobulins.
37. A pharmaceutical composition comprising the altered antibody of
claim 26 or 35 and a pharmaceutically acceptable carrier.
38. The pharmaceutical composition of claim 37 further comprising
acetylsalicylic acid.
Description
FIELD OF THE INVENTION
[0001] This invention relates to monoclonal antibodies (mAbs) that
bind to a human coagulation factor or cofactor and their use as
self-limiting inhibitors of thrombosis.
BACKGROUND OF THE INVENTION
[0002] Under normal circumstances, an injury, be it minor or major,
to vascular endothelial cells lining a blood vessel triggers a
hemostatic response through a sequence of events commonly referred
to as the coagulation "cascade." The cascade culminates in the
conversion of soluble fibrinogen to insoluble fibrin which,
together with platelets, forms a localized clot or thrombus which
prevents extravasation of blood components. Wound healing can then
occur followed by clot dissolution and restoration of blood vessel
integrity and flow.
[0003] The events which occur between injury and clot formation are
a carefully regulated and linked series of reactions. In brief, a
number of plasma coagulation proteins in inactive proenzyme forms
and cofactors circulate in the blood. Active enzyme complexes are
assembled at an injury site and are sequentially activated to
serine proteases, with each successive serine protease catalyzing
the subsequent proenzyme to protease activation. This enzymatic
cascade results in each step magnifying the effect of the
succeeding step. For an overview of the coagulation cascade see the
first chapter of "Thombosis and Hemorrhage", J. Loscalzo and A.
Schafer, eds., Blackwell Scientific Publications, Oxford, England
(1994).
[0004] While efficient clotting limits the loss of blood at an
injury site, inappropriate formation of thrombi in veins or
arteries is a common cause of disability and death. Abnormal
clotting activity can result in and/or from pathologies or
treatments such as myocardial infarction, unstable angina, atrial
fibrillation, stroke, renal damage, percutaneous translumenal
coronary angioplasty, disseminated intravascular coagulation,
sepsis, pulmonary embolism and deep vein thrombosis. The formation
of clots on foreign surfaces of artificial organs, shunts and
prostheses such as artificial heart valves is also problematic.
[0005] Approved anticoagulant agents currently used in treatment of
these pathologies and other thrombotic and embolic disorders
include the sulfated heteropolysaccharides heparin and low
molecular weight (LMW) heparin. These agents are administered
parenterally and can cause rapid and complete inhibition of
clotting by activation of the thrombin inhibitor, antithrombin III
and inactivation of all of the clotting factors.
[0006] However, due to their potency, heparin and LMW heparin
suffer drawbacks. Uncontrolled bleeding as a result of the simple
stresses of motion and accompanying contacts with physical objects
or at surgical sites is the major complication and is observed in 1
to 7% of patients receiving continuous infusion and in 8 to 14% of
patients given intermittent bolus doses. To minimize this risk,
samples are continuously drawn to enable ex vivo clotting times to
be continuously monitored, which contributes substantially to the
cost of therapy and the patient's inconvenience.
[0007] Further, the therapeutic target range to achieve the desired
level of efficacy without placing the patient at risk for bleeding
is narrow. The therapeutic range is approximately 1 to less than 3
ug heparin/ml plasma which results in activated partial
thromboplastin time (aPTT) assay times of about 35 to about 100
seconds. Increasing the heparin concentration to 3 ug/ml exceeds
the target range and at concentrations greater than 4 ug/ml,
clotting activity is not detectable. Thus, great care must be taken
to keep the patient's plasma concentrations within the therapeutic
range.
[0008] Another approved anticoagulant with slower and longer
lasting effect is warfarin, a coumarin derivative. Warfarin acts by
competing with Vitamin K dependent post-translational modification
of prothrombin and other Vitamin K-dependent clotting factors.
[0009] The general pattern of anticoagulant action, in which blood
is rendered non-clottable at concentrations only slightly higher
than the therapeutic range is seen for warfarin as well as for
heparin and LMW heparin. Clearly, a need exists for an
anticoagulant agent which is efficacious in controlling thrombotic
and embolic disorders yet does not cause uncontrolled bleeding or
its possibility.
SUMMARY OF THE INVENTION
[0010] Accordingly, one aspect of the present invention is a method
for inhibiting thrombosis in an animal comprising administering an
effective dose of an anti-coagulation factor monoclonal antibody
having self-limiting neutralizing activity.
[0011] Another aspect of the invention is an anti-coagulation
factor monoclonal antibody having self-limiting neutralizing activy
against the coagulation factor.
[0012] Another aspect of the invention is a monoclonal antibody
having the identifying characteristics of SB 249413, SB 249415, SB
249416, SB 249417, SB 257731, SB 257732, 9E4(2)F4 or 11G4(1)B9.
[0013] Another aspect of the invention is a hybridoma cell line
having the identifying characteristics of 9E4(2)F4 or
11G4(1)B9.
[0014] Another aspect of the invention is a neutralizing Fab
fragment or F(ab').sub.2 fragment thereof, produced by deleting the
Fc region of the monoclonal antibodies of the invention.
[0015] Another aspect of the invention is a neutralizing Fab
fragment or F(ab').sub.2 fragment thereof, produced by chain
shuffling whereby the Fd heavy chain of the monoclonal antibodies
of the invention is expressed in a murine light chain filamentous
phage Fab display library.
[0016] Another aspect of the invention is a neutralizing Fab
fragment or F(ab').sub.2 fragment thereof, produced by chain
shuffling whereby the light chain of the monoclonal antibodies of
the invention is expressed in a murine heavy chain filamentous
phage Fab display library.
[0017] Another aspect of the invention is an immunoglobulin heavy
chain complementarity determining region having an amino acid
sequence selected from the group consisting of SEQ ID NOs: 8, 9 and
10.
[0018] Another aspect of the invention is an immunoglobulin light
chain complementarity determining region having an amino acid
sequence selected from the group consisting of SEQ ID NOs: 12, 13
and 14.
[0019] Another aspect of the invention is an altered antibody
comprising a heavy chain and a light chain, wherein the framework
regions of said heavy and light-chains are derived from at least
one selected antibody and the amino acid sequences of the
complementarity determining regions of each said chain are derived
from an anti-coagulation factor monoclonal antibody having
self-limiting neutralizing activity against the coagulation
factor.
[0020] Another aspect of the invention is a chimeric antibody
comprising a heavy chain and a light chain, said antibody
characterized by inhibiting the function of intrinsic or common
pathway coagulation factors in a self-limiting manner, wherein
thrombosis is inhibited and limited modulation of coagulation is
produced, wherein the constant regions of said heavy and light
chains are derived from at least one selected antibody and the
amino acid sequences of the variable regions of each said chain are
derived from an anti-coagulation factor monoclonal antibody having
self-limiting neutralizing activity against the coagulation
factor.
[0021] Yet another aspect of the invention is a pharmaceutical
composition comprising the humanized antibodies or chimeric
antibody of the invention and a pharmaceutically acceptable
carrier.
BRIEF DESCRIPTION OF THE DRAWINGS
[0022] FIG. 1 is a graph of experimental results demonstrating the
titration of normal human plasma with the murine anti-Factor IX
mAbs BC1 and BC2.
[0023] FIG. 2 is a graph of experimental results demonstrating the
titration of normal human plasma with the murine anti-Factor IX
mAbs 9E4(2)F4 and 11G4(1)B9.
[0024] FIG. 3 is a graph of experimental results demonstrating the
titration of normal human plasma with the murine anti-Factor X mAbs
HFXHC and HFXLC and the murine anti-Factor XI mAb HFXI.
[0025] FIG. 4 is a histogram of experimental results demonstrating
the effect of heparin, acetylsalicylic acid and murine Factor IX
mabs on activated partial thromboplastin time (aPTT) at 60 minutes
in a rat carotid thrombosis model.
[0026] FIG. 5 is a histogram of experimental results demonstrating
the effect of heparin, acetylsalicylic acid and murine Factor IX
mabs on prothrombin time at 60 minutes in a rat carotid thrombosis
model.
[0027] FIG. 6 is a histogram of experimental results demonstrating
the effect of heparin, acetylsalicylic acid and murine Factor IX
mabs on occlusion of carotid artery flow in a rat carotid
thrombosis model.
[0028] FIG. 7 is a histogram of experimental results demonstrating
the effect of heparin, acetylsalicylic acid and murine Factor IX
mabs on thrombus weight in a rat carotid thrombosis model.
[0029] FIG. 8 is a histogram of experimental results demonstrating
the effect of heparin, the murine Factor IX mab BC2, a chimeric
Factor IX mab and humanized factor IX mAbs on aPTT at 60 minutes in
a rat carotid thrombosis model.
[0030] FIG. 9 is a histogram of experimental results demonstrating
the effect of heparin, the murine Factor IX mab BC2, a chimeric
Factor IX mab and humanized factor IX mAbs on thrombus weight in a
rat carotid thrombosis model.
DETAILED DESCRIPTION OF THE INVENTION
[0031] The present invention provides a variety of antibodies,
altered antibodies and fragments thereof directed against
coagulation factors, which are characterized by self-limiting
neutralizing activity. Preferably, the coagulation factor is from
the intrinsic or common coagulation pathway. Most preferably, the
anti-coagulation factor antibodies are anti-Factor IX, anti-Factor
IXa, anti-Factor X, anti-Factor Xa, anti-Factor XI, anti-Factor
XIa, anti-Factor VIII, anti-Factor VIIIa, anti-Factor V,
anti-Factor Va, anti-Factor VII, anti-Factor VIIa or anti-thrombin.
Particularly preferred are anti-Factor IX antibodies. Exemplary
anti-coagulation factor antibodies are the humanized monoclonal
antibodies SB 249413, SB 249415, SB 249416, SB 249417, SB 257731
and SB 257732 directed against human Factor IX, the chimeric
monoclonal antibody ch.alpha.FIX directed against human Factor IX,
the murine monoclonal antibodies BC1, BC2, 9E4(2)F4 and 11G4(1)B9
which are directed against human Factor IX and/or Factor IXa or the
murine monoclonal antibodies HFXLC and HFXI which are directed
against human Factors X and XI, respectively. Particularly
preferred is the anti-human Factor IX monoclonal antibody SB
249417.
[0032] The antibodies of the present invention can be prepared by
conventional hybridoma techniques, phage display combinatorial
libraries, immunoglobulin chain shuffling and humanization
techniques to generate novel self-limiting neutralizing antibodies.
Also included are fully human mAbs having self-limiting
neutralizing activity. These products are useful in therapeutic and
pharmaceutical compositions for thrombotic and embolic disorders
associated with myocardial infarction, unstable angina, atrial
fibrillation, stroke, renal damage, pulmonary embolism, deep vein
thrombosis, percutaneous translumenal coronary angioplasty,
disseminated intravascular coagulation, sepsis, artificial organs,
shunts or prostheses.
[0033] As used herein, the term "self-limiting neutralizing
activity" refers to the activity of an antibody that binds to a
human coagulation factor, preferably from the intrinsic and common
pathways, including Factor IX/IXa, X/Xa, XI/XIa, VIII/VIIIa and
V/Va, VII/VIIa and thrombin and inhibits thrombosis in a manner
such that limited modulation of coagulation is produced. "Limited
modulation of coagulation" is defined as an increase in clotting
time, as measured by prolongation of the activated partial
thromboplastin time (aPTT), where plasma remains clottable with
aPTT reaching a maximal value despite increasing concentrations of
monoclonal antibody. This limited modulation of coagulation is in
contrast to plasma being rendered unclottable and exhibiting an
infinite aPTT in the presence of increasing concentrations of
heparin. Preferably, the maximal aPTT value of the methods of the
invention are within the heparin therapeutic range. Most
preferably, maximal aPTT is within the range of about 35 seconds to
about 100 seconds which corresponds to about 1.5 times to about 3.5
times the normal control aPTT value. In one embodiment of the
invention, aPTT is prolonged without significant prolongation of
prothrombin time (PT).
[0034] "Altered antibody" refers to a protein encoded by an altered
immunoglobulin coding region, which may be obtained by expression
in a selected host cell. Such altered antibodies are engineered
antibodies (e.g., chimeric or humanized antibodies) or antibody
fragments lacking all or part of an immunoglobulin constant region,
e.g., Fv, Fab, Fab' or F(ab').sub.2 and the like.
[0035] "Altered immunoglobulin coding region" refers to a nucleic
acid sequence encoding an altered antibody of the invention. When
the altered antibody is a CDR-grafted or humanized antibody, the
sequences that encode the complementarity determining regions
(CDRs) from a non-human immunoglobulin are inserted into a first
immunoglobulin partner comprising human variable framework
sequences. Optionally, the first immunoglobulin partner is
operatively linked to a second immunoglobulin partner.
[0036] "First immunoglobulin partner" refers to a nucleic acid
sequence encoding a human framework or human immunoglobulin
variable region in which the native (or naturally-occurring)
CDR-encoding regions are replaced by the CDR-encoding regions of a
donor antibody. The human variable region can be an immunoglobulin
heavy chain, a light chain (or both chains), an analog or
functional fragments thereof. Such CDR regions, located within the
variable region of antibodies (immunoglobulins) can be determined
by known methods in the art. For example Kabat et al. in "Sequences
of Proteins of Immunological Interest", 4th Ed., U.S. Department of
Health and Human Services, National Institutes of Health (1987)
disclose rules for locating CDRs. In addition, computer programs
are known which are useful for identifying CDR
regions/structures.
[0037] "Second immunoglobulin partner" refers to another nucleotide
sequence encoding a protein or peptide to which the first
immunoglobulin partner is fused in frame or by means of an optional
conventional linker sequence (i.e., operatively linked).
Preferably, it is an immunoglobulin gene. The second immunoglobulin
partner may include a nucleic acid sequence encoding the entire
constant region for the same (i.e., homologous, where the first and
second altered antibodies are derived from the same source) or an
additional (i.e., heterologous) antibody of interest. It may be an
immunoglobulin heavy chain or light chain (or both chains as part
of a single polypeptide). The second immunoglobulin partner is not
limited to a particular immunoglobulin class or isotype. In
addition, the second immunoglobulin partner may comprise part of an
immunoglobulin constant region, such as found in a Fab, or
F(ab).sub.2 (i.e., a discrete part of an appropriate human constant
region or framework region). Such second immunoglobulin partner may
also comprise a sequence encoding an integral membrane protein
exposed on the outer surface of a host cell, e.g., as part of a
phage display library, or a sequence encoding a protein for
analytical or diagnostic detection, e.g., horseradish peroxidase,
.beta.-galactosidase, etc.
[0038] The terms Fv, Fc, Fd, Fab, Fab' or F(ab').sub.2 are used
with their standard meanings. See, e.g., Harlow et al. in
"Antibodies A Laboratory Manual", Cold Spring Harbor Laboratory,
(1988).
[0039] As used herein, an "engineered antibody" describes a type of
altered antibody, i.e., a full-length synthetic antibody (e.g., a
chimeric or humanized antibody as opposed to an antibody fragment)
in which a portion of the light and/or heavy chain variable domains
of a selected acceptor antibody are replaced by analogous parts
from one or more donor antibodies which have specificity for the
selected epitope. For example, such molecules may include
antibodies characterized by a humanized heavy chain associated with
an unmodified light chain (or chimeric light chain), or vice versa.
Engineered antibodies may also be characterized by alteration of
the nucleic acid sequences encoding the acceptor antibody light
and/or heavy variable domain framework regions in order to retain
donor antibody binding specificity. These antibodies can comprise
replacement of one or more CDRs (preferably all) from the acceptor
antibody with CDRs from a donor antibody described herein.
[0040] A "chimeric antibody" refers to a type of engineered
antibody which contains a naturally-occurring variable region
(light chain and heavy chains) derived from a donor antibody in
association with light and heavy chain constant regions derived
from an acceptor antibody.
[0041] A "humanized antibody" refers to a type of engineered
antibody having its CDRs derived from a non-human donor
immunoglobulin, the remaining immunoglobulin-derived parts of the
molecule being derived from one or more human immunoglobulins. In
addition, framework support residues may be altered to preserve
binding affinity. See, e.g., Queen et al., Proc. Natl Acad Sci USA,
86, 10029-10032 (1989), Hodgson et al., Bio/Technology, 9, 421
(1991).
[0042] The term "donor antibody" refers to a monoclonal or
recombinant antibody which contributes the nucleic acid sequences
of its variable regions, CDRs or other functional fragments or
analogs thereof to a first immunoglobulin partner, so as to provide
the altered immunoglobulin coding region and resulting expressed
altered antibody with the antigenic specificity and neutralizing
activity characteristic of the donor antibody. One donor antibody
suitable for use in this invention is a murine self-limiting
neutralizing monoclonal antibody designated as BC2. Other suitable
donor antibodies include the murine self-limiting neutralizing
monoclonal antibodies designated as BC1, 9E4(2)F4, 11G4(1)B9, HFXLC
and HFXI.
[0043] The term "acceptor antibody" refers to monoclonal or
recombinant antibodies heterologous to the donor antibody, which
contributes all, or a portion, of the nucleic acid sequences
encoding its heavy and/or light chain framework regions and/or its
heavy and/or light chain constant regions to the first
immunoglobulin partner. Preferably, a human antibody is the
acceptor antibody.
[0044] CDRs are defined as the complementarity determining region
amino acid sequences of an antibody which are the hypervariable
regions of immunoglobulin heavy and light chains. See, e.g., Kabat
et al., Sequences of Proteins of Immunological Interest, 4th Ed.,
U.S. Department of Health and Human Services, National Institutes
of Health (1987). There are three heavy chain and three light chain
CDRs or CDR regions in the variable portion of an immunoglobulin.
Thus, "CDRs" as used herein refers to all three heavy chain CDRs,
or all three light chain CDRs or both all heavy and all light chain
CDRs, if appropriate.
[0045] CDRs provide the majority of contact residues for the
binding of the antibody to the antigen or epitope. CDRs of interest
in this invention are derived from donor antibody variable heavy
and light chain sequences, and include analogs of the naturally
occurring CDRs, which analogs also share or retain the same antigen
binding specificity and/or neutralizing ability as the donor
antibody from which they were derived.
[0046] By "sharing the antigen binding specificity or neutralizing
ability" is meant, for example, that although mAb BC2 may be
characterized by a certain level of self-limiting neutralizing
activity, a CDR encoded by a nucleic acid sequence of BC2 in an
appropriate structural environment may have a lower, or higher
activity. It is expected that CDRs of BC2 in such environments will
nevertheless recognize the same epitope(s) as BC2.
[0047] A "functional fragment" is a partial heavy or light chain
variable sequence (e.g., minor deletions at the amino or carboxy
terminus of the immunoglobulin variable region) which retains the
same antigen binding specificity and/or neutralizing ability as the
antibody from which the fragment was derived.
[0048] An "analog" is an amino acid sequence modified by at least
one amino acid, wherein said modification can be chemical or a
substitution or a rearrangement of a few amino acids (i.e., no more
than 10), which modification permits the amino acid sequence to
retain the biological characteristics, e.g., antigen specificity
and high affinity, of the unmodified sequence. Exemplary analogs
include silent mutations which can be constructed, via
substitutions, to create certain endonuclease restriction sites
within or surrounding CDR-encoding regions.
[0049] Analogs may also arise as allelic variations. An "allelic
variation or modification" is an alteration in the nucleic acid
sequence encoding the amino acid or peptide sequences of the
invention. Such variations or modifications may be due to
degeneracy in the genetic code or may be deliberately engineered to
provide desired characteristics. These variations or modifications
may or may not result in alterations in any encoded amino acid
sequence.
[0050] The term "effector agents" refers to non-protein carrier
molecules to which the altered antibodies, and/or natural or
synthetic light or heavy chains of the donor antibody or other
fragments of the donor antibody may be associated by conventional
means. Such non-protein carriers can include conventional carriers
used in the diagnostic field, e.g., polystyrene or other plastic
beads, polysaccharides, e.g., as used in the BIAcore (Pharmacia)
system, or other non-protein substances useful in the medical field
and safe for administration to humans and animals. Other effector
agents may include a macrocycle, for chelating a heavy metal atom
or radioisotopes. Such effector agents may also be useful to
increase the half-life of the altered antibodies, e.g.,
polyethylene glycol.
[0051] For use in constructing the antibodies, altered antibodies
and fragments of this invention, a non-human species such as
bovine, ovine, monkey, chicken, rodent (e.g., murine and rat) may
be employed to generate a desirable immunoglobulin upon presentment
with a human coagulation factor, preferably factor IX/IXa, X/Xa,
XI/XIa, VIII/VIIIa, V/Va, VII/VIIa or thrombin or a peptide epitope
therefrom. Conventional hybridoma techniques are employed to
provide a hybridoma cell line secreting a non-human mAb to the
respective coagulation factor. Such hybridomas are then screened
for binding using Factor IX/IXa, X/Xa, XI/XIa, VIII/VIIIa, V/Va,
VII/VIIa or thrombin coated to 96-well plates, as described in the
Examples section, or alternatively with biotinylated Factor IX/IXa,
X/Xa, XI/XIa, VIII/VIIIa, V/Va, VII/VIIa or thrombin bound to a
streptavidin-coated plate. Alternatively, fully human mAbs can be
generated by techniques known to those skilled in the art and used
in this invention.
[0052] One exemplary, self-limiting neutralizing mAb of this
invention is mAb BC2, a murine antibody which can be used for the
development of a chimeric or humanized molecule. The BC2 mAb is
characterized by a self-limiting inhibitory activity on clotting
time. As measured by the aPTT assay, the effect of the BC2 mAb on
clot time exhibits a maximal value of about 100 seconds. The BC2
mAb also binds Factor IXa, inhibits Factor IX to IXa conversion and
inhibits Factor IXa activity. Divalent metal cofactors are required
for activity, with the mAb exhibiting a greater preference for Ca
over Mn.sup.2+. The observed IC.sub.50 in the aPTT assay is
approximately 50 nM. The BC2 mAb exhibits a species
cross-reactivity with rat and is of isotype IgG2a.
[0053] Other desirable donor antibodies are the murine mAbs, BC1,
9E4(2)F4 and 11G4(1)B9. These mAbs are characterized by a
self-limiting inhibitory activity on clotting time. As measured by
the aPTT assay, the effect of these mAbs on clot time exhibits a
maximal value of about 90 to 100 seconds for 9E4(2)F4 and about 80
seconds for 11G4(1)B9. The BC1 mAb also binds Factor IXa, inhibits
Factor IXa activity but does not inhibit Factor IX to IXa
conversion. A metal cofactor is not required for its activity. The
observed IC.sub.50 for BC1 in the aPTT assay is approximately 35
nM. The BC1 mAb is of isotype IgG1.
[0054] Yet another desirable donor antibody characterized by a
self-limiting inhibitory activity on clotting time is the murine
mAb HFXLC. As measured by the aPTT assay, the effect of the HFXLC
mAb on clot time exhibits a maximal value of about 50 to 60
seconds. The HFXLC mAb binds Factor X light chain, and inhibits
Factor X/Xa activity. The observed IC.sub.50 in the aPTT assay is
approximately 20 nM.
[0055] Yet another desirable donor antibody characterized by a
self-limiting inhibitory activity on clotting time is the murine
mAb, HFXI. As measured by the aPTT assay, the effect of the HFXI
mAb on clot time exhibits a maximal value of about 100 seconds. The
HFXLC mAb binds Factor XI and inhibits Factor XI/XIa activity. The
observed IC.sub.50 in the aPTT assay is approximately 30 nM.
[0056] While not intending to be bound to any particular theory
regarding the mechanism of action, these mabs appear to regulate
coagulation by a non-competitive or allosteric mechanism whereby
only partial inhibition is achieved.
[0057] This invention is not limited to the use of the BC1, BC2,
9E4(2)F4, 11G4(1)B9, HFXLC, HFXI or their hypervariable (i.e., CDR)
sequences. Any other appropriate high-affinity antibodies
characterized by a self-limiting neutralizing activity and
corresponding CDRs may be substituted therefor. Identification of
the donor antibody in the following description as BC1, BC2,
9E4(2)F4, 11G4(1)B9, HFXLC or HFXI is made for illustration and
simplicity of description only.
[0058] The present invention also includes the use of Fab fragments
or F(ab').sub.2 fragments derived from mAbs directed against the
appropriate human coagulation factor or cofactor. These fragments
are useful as agents having self-limiting neutralizing activity
against coagulation factors, preferably against Factor IX/IXa,
X/Xa, Xi/XIa, VIII/VIIIa, V/Va, VII/VIIa or thrombin. A Fab
fragment contains the entire light chain and amino terminal portion
of the heavy chain. An F(ab').sub.2 fragment is the fragment formed
by two Fab fragments bound by disulfide bonds. The mabs BC1, BC2,
9E4(2)F4, 11G4(1)B9, HFXLC and HFXI and other similar high affinity
antibodies, provide sources of Fab fragments and F(ab').sub.2
fragments which can be obtained by conventional means, e.g.,
cleavage of the mAb with the appropriate proteolytic enzymes,
papain and/or pepsin, or by recombinant methods. These Fab and
F(ab').sub.2 fragments are useful themselves as therapeutic,
prophylactic or diagnostic agents, and as donors of sequences
including the variable regions and CDR sequences useful in the
formation of recombinant or humanized antibodies as described
herein.
[0059] The Fab and F(ab').sub.2 fragments can be constructed via a
combinatorial phage library (see, e.g., Winter et al., Ann. Rev.
Immunol., 12:433-455 (1994)) or via immunoglobulin chain shuffling
(see, e.g., Marks et al., Bio/Technology, 10:779-783 (1992), which
are both hereby incorporated by reference in their entirety,
wherein the Fd or v.sub.H immunoglobulin from a selected antibody
(e.g., BC2) is allowed to associate with a repertoire of light
chain immunoglobulins, v.sub.L (or v.sub.K), to form novel Fabs.
Conversely, the light chain immunoglobulin from a selected antibody
may be allowed to associate with a repertoire of heavy chain
immunoglobulins, v.sub.H (or Fd), to form novel Fabs. Self-limiting
neutralizing Factor IX Fabs can be obtained by allowing the Fd of
mAb BC2 to associate with a repertoire of light chain
immunoglobulins. Hence, one is able to recover neutralizing Fabs
with unique sequences (nucleotide and amino acid) from the chain
shuffling technique.
[0060] The mAb BC2 or other antibodies described above may
contribute sequences, such as variable heavy and/or light chain
peptide sequences, framework sequences, CDR sequences, functional
fragments, and analogs thereof, and the nucleic acid sequences
encoding them, useful in designing and obtaining various altered
antibodies which are characterized by the antigen binding
specificity of the donor antibody.
[0061] The nucleic acid sequences of this invention, or fragments
thereof, encoding the variable light chain and heavy chain peptide
sequences are also useful for mutagenic introduction of specific
changes within the nucleic acid sequences encoding the CDRs or
framework regions, and for incorporation of the resulting modified
or fusion nucleic acid sequence into a plasmid for expression. For
example, silent substitutions in the nucleotide sequence of the
framework and CDR-encoding regions can be used to create
restriction enzyme sites which facilitate insertion of mutagenized
CDR and/or framework regions. These CDR-encoding regions can be
used in the construction of the humanized antibodies of the
invention.
[0062] The nucleic and amino acid sequences of the BC2 heavy chain
variable region are listed in SEQ ID NOs: 5 and 7. The CDR
sequences from this region are listed in SEQ ID NOs: 8, 9 and
10.
[0063] The nucleic and amino acid sequences of the BC2 light chain
variable region are listed in SEQ ID NOs: 6 and 11. The CDR
sequences from this region are listed in SEQ ID NOs: 12, 13 and
14.
[0064] Taking into account the degeneracy of the genetic code,
various coding sequences may be constructed which encode the
variable heavy and light chain amino acid sequences and CDR
sequences of the invention as well as functional fragments and
analogs thereof which share the antigen specificity of the donor
antibody. The isolated nucleic acid sequences of this invention, or
fragments thereof, encoding the variable chain peptide sequences or
CDRs can be used to produce altered antibodies, e.g., chimeric or
humanized antibodies or other engineered antibodies of this
invention when operatively combined with a second immunoglobulin
partner.
[0065] It should be noted that in addition to isolated nucleic acid
sequences encoding portions of the altered antibody and antibodies
described herein, other such nucleic acid sequences are encompassed
by the present invention, such as those complementary to the native
CDR-encoding sequences or complementary to the modified human
framework regions surrounding the CDR-encoding regions. Useful DNA
sequences include those sequences which hybridize under stringent
hybridization conditions to the DNA sequences. See, T. Maniatis et
al., Molecular Cloning (A Laboratory Manual), Cold Spring Harbor
Laboratory (1982), pp. 387-389. An example of one such stringent
hybridization condition is hybridization at 4.times. SSC at
65.degree. C., followed by a washing in 0.1.times. SSC at
65.degree. C. for one hour. Alternatively, an exemplary stringent
hybridization condition is 50% formamide, 4.times. SSC at
42.degree. C. Preferably, these hybridizing DNA sequences are at
least about 18 nucleotides in length, i.e., about the size of a
CDR.
[0066] Altered immunoglobulin molecules can encode altered
antibodies which include engineered antibodies such as chimeric
antibodies and humanized antibodies. A desired altered
immunoglobulin coding region contains CDR-encoding regions that
encode peptides having the antigen specificity of a Factor IX/IXa,
X/Xa, XI/XIa, VIII/VIIIa, V/Va, VII/VIIa or thrombin antibody,
preferably a high affinity antibody such as provided by the present
invention, inserted into a first immunoglobulin partner such as a
human framework or human immunoglobulin variable region.
[0067] Preferably, the first immunoglobulin partner is operatively
linked to a second immunoglobulin partner. The second
immunoglobulin partner is defined above, and may include a sequence
encoding a second antibody region of interest, for example an Fc
region. Second immunoglobulin partners may also include sequences
encoding another immunoglobulin to which the light or heavy chain
constant region is fused in frame or by means of a linker sequence.
Engineered antibodies directed against functional fragments or
analogs of coagulation factors may be designed to elicit enhanced
binding with the same antibody.
[0068] The second immunoglobulin partner may also be associated
with effector agents as defined above, including non-protein
carrier molecules, to which the second immunoglobulin partner may
be operatively linked by conventional means.
[0069] Fusion or linkage between the second immunoglobulin
partners, e.g., antibody sequences, and the effector agent may be
by any suitable means, e.g., by conventional covalent or ionic
bonds, protein fusions, or hetero-bifunctional cross-linkers, e.g.,
carbodiimide, glutaraldehyde and the like. Such techniques are
known in the art and are described in conventional chemistry and
biochemistry texts.
[0070] Additionally, conventional linker sequences which simply
provide for a desired amount of space between the second
immunoglobulin partner and the effector agent may also be
constructed into the altered immunoglobulin coding region. The
design of such linkers is well known to those of skill in the
art.
[0071] In addition, signal sequences for the molecules of the
invention may be modified by techniques known to those skilled in
the art to enhance expression.
[0072] A preferred altered antibody contains a variable heavy
and/or light chain peptide or protein sequence having the antigen
specificity of mAb BC2, e.g., the V.sub.H and V.sub.L chains. Still
another desirable altered antibody of this invention is
characterized by the amino acid sequence containing at least one,
and preferably all of the CDRs of the variable region of the heavy
and/or light chains of the murine antibody molecule BC2 with the
remaining sequences being derived from a human source, or a
functional fragment or analog thereof.
[0073] In a further embodiment, the altered antibody of the
invention may have attached to it an additional agent. For example,
recombinant DNA technology may be used to produce an altered
antibody of the invention in which the Fc fragment or CH2 CH3
domain of a complete antibody molecule has been replaced by an
enzyme or other detectable molecule (i.e., a polypeptide effector
or reporter molecule).
[0074] The second immunoglobulin partner may also be operatively
linked to a non-immunoglobulin peptide, protein or fragment thereof
heterologous to the CDR-containing sequence having antigen
specificity to a coagulation factor, preferably to Factor IX/IXa,
X/Xa, XI/XIa, VIII/VIIIa, V/Va, VII/VIIa or thrombin. The resulting
protein may exhibit both antigen specificity and characteristics of
the non-immunoglobulin upon expression. That fusion partner
characteristic may be, e.g., a functional characteristic such as
another binding or receptor domain or a therapeutic characteristic
if the fusion partner is itself a therapeutic protein or additional
antigenic characteristics.
[0075] Another desirable protein of this invention may comprise a
complete antibody molecule, having full length heavy and light
chains or any discrete fragment thereof, such as the Fab or
F(ab').sub.2 fragments, a heavy chain dimer or any minimal
recombinant fragments thereof such as an F.sub.V or a single-chain
antibody (SCA) or any other molecule with the same specificity as
the selected donor mAb, e.g., mAb BC1, BC2, 9E4(2)F4, 11G4(1)B9,
HFXLC or HFXI. Such protein may be used in the form of an altered
antibody or may be used in its unfused form.
[0076] Whenever the second immunoglobulin partner is derived from
an antibody different from the donor antibody, e.g., any isotype or
class of immunoglobulin framework or constant regions, an
engineered antibody results. Engineered antibodies can comprise
immunoglobulin (Ig) constant regions and variable framework regions
from one source, e.g., the acceptor antibody, and one or more
(preferably all) CDRs from the donor antibody, e.g., the
anti-Factor IX/IXa, X/Xa, XI/XIa, VIII/VIIIa, V/Va, VII/VIIa or
thrombin antibodies described herein. In addition, alterations,
e.g., deletions, substitutions, or additions, of the acceptor mAb
light and/or heavy variable domain framework region at the nucleic
acid or amino acid levels, or the donor CDR regions may be made in
order to retain donor antibody antigen binding specificity.
[0077] Such engineered antibodies are designed to employ one (or
both) of the variable heavy and/or light chains of the coagulation
factor mAb (optionally modified as described) or one or more of the
heavy or light chain CDRs. The engineered antibodies of the
invention exhibit self-limiting neutralizing activity.
[0078] Such engineered antibodies may include a humanized antibody
containing the framework regions of a selected human immunoglobulin
or subtype or a chimeric antibody containing the human heavy and
light chain constant regions fused to the coagulation factor
antibody functional fragments. A suitable human (or other animal)
acceptor antibody may be one selected from a conventional database,
e.g., the KABAT.RTM. database, Los Alamos database, and Swiss
Protein database, by homology to the nucleotide and amino acid
sequences of the donor antibody. A human antibody characterized by
a homology to the framework regions of the donor antibody (on an
amino acid basis) may be suitable to provide a heavy chain variable
framework region for insertion of the donor CDRs. A suitable
acceptor antibody capable of donating light chain variable
framework regions may be selected in a similar manner. It should be
noted that the acceptor antibody heavy and light chains are not
required to originate from the same acceptor antibody.
[0079] Preferably, the heterologous framework and constant regions
are selected from human immunoglobulin classes and isotypes, such
as IgG (subtypes 1 through 4), IgM, IgA, and IgE. However, the
acceptor antibody need not comprise only human immunoglobulin
protein sequences. For instance, a gene may be constructed in which
a DNA sequence encoding part of a human immunoglobulin chain is
fused to a DNA sequence encoding a non-immunoglobulin amino acid
sequence such as a polypeptide effector or reporter molecule.
[0080] A particularly preferred humanized antibody contains CDRs of
BC2 inserted onto the framework regions of a selected human
antibody sequence. For neutralizing humanized antibodies, one, two
or preferably three CDRs from the Factor IX antibody heavy chain
and/or light chain variable regions are inserted into the framework
regions of the selected human antibody sequence, replacing the
native CDRs of the latter antibody.
[0081] Preferably, in a humanized antibody, the variable domains in
both human heavy and light chains have been engineered by one or
more CDR replacements. It is possible to use all six CDRs, or
various combinations of less than the six CDRS. Preferably all six
CDRs are replaced. It is possible to replace the CDRs only in the
human heavy chain, using as light chain the unmodified light chain
from the human acceptor antibody. Still alternatively, a compatible
light chain may be selected from another human antibody by recourse
to the conventional antibody databases. The remainder of the
engineered antibody may be derived from any suitable acceptor human
immunoglobulin.
[0082] The engineered humanized antibody thus preferably has the
structure of a natural human antibody or a fragment thereof, and
possesses the combination of properties required for effective
therapeutic use, e.g., treatment of thrombotic and embolic diseases
in man.
[0083] Most preferably, the humanized antibodies have a heavy chain
amino acid sequence as set forth in SEQ ID NO: 31, 52, or 89. Also
most preferred are humanized antibodies having a light chain amino
acid sequence as set forth in SEQ ID NO: 44, 57, 62, 74, 78 or 99.
Particularly preferred is the humanized antibody SB 249413 where
the heavy chain has the amino acid sequence as set forth in SEQ ID
NO: 31 and the light chain has the amino acid sequence as set forth
in SEQ ID NO: 44. Also particularly preferred is the humanized
antibody SB 249415 where the heavy chain has the amino acid
sequence as set forth in SEQ ID NO: 52 and the light chain has the
amino acid sequence as set forth in SEQ ID NO: 57. Also
particularly preferred is the humanized antibody SB 249416 where
the heavy chain has the amino acid sequence as set forth in SEQ ID
NO: 52 and the light chain has the amino acid sequence as set forth
in SEQ ID NO: 62. Also particularly preferred is the humanized
antibody SB 249417 where the heavy chain has the amino acid
sequence as set forth in SEQ ID NO: 52 and the light chain has the
amino acid sequence as set forth in SEQ ID NO: 74. Also
particularly preferred is the humanized antibody SB 257731 where
the heavy chain has the amino acid sequence as set forth in SEQ ID
NO: 52 and the light chain has the amino acid sequence as set forth
in SEQ ID NO: 78. Also particularly preferred is the humanized
antibody SB 257732 where the heavy chain has the amino acid
sequence as set forth in SEQ ID NO: 89 and the light chain has the
amino acid sequence as set forth in SEQ ID NO: 99.
[0084] It will b e understood by those skilled in the art that an
engineered antibody may be further modified by changes in variable
domain amino acids without necessarily affecting the specificity
and high affinity of the donor antibody (i.e., an analog). It is
anticipated that heavy and light chain amino acids may be
substituted by other amino acids either in the variable domain
frameworks or CDRs or both. These substitutions could be supplied
by the donor antibody or consensus sequences from a particular
subgroup.
[0085] In addition, the constant region may be altered to enhance
or decrease selective properties of the molecules of this
invention. For example, dimerization, binding to Fc receptors, or
the ability to bind and activate complement (see, e.g., Angal et
al., Mol. Immunol, 30, 105-108 (1993), Xu et al., J. Biol. Chem,
269, 3469-3474 (1994), Winter et al., EP 307434-B).
[0086] An altered antibody which is a chimeric antibody differs
from the humanized antibodies described above by providing the
entire non-human donor antibody heavy chain and light chain
variable regions, including framework regions, in association with
human immunoglobulin constant regions for both chains. It is
anticipated that chimeric antibodies which retain additional
non-human sequence relative to humanized antibodies of this
invention may elicit a significant immune response in humans.
[0087] Such antibodies are useful in the prevention and treatment
of thrombotic and embolic disorders, as discussed below.
[0088] Preferably, the variable light and/or heavy chain sequences
and the CDRs of mAb BC2 or other suitable donor mAbs, e.g., BC1,
9E4(2)F4, 11G4(1)B9, HFXLC, HFXI, and their encoding nucleic acid
sequences, are utilized in the construction of altered antibodies,
preferably humanized antibodies, of this invention, by the
following process. The same or similar techniques may also be
employed to generate other embodiments of this invention.
[0089] A hybridoma producing a selected donor mAb, e.g., the murine
antibody BC2, is conventionally cloned and the DNA of its heavy and
light chain variable regions obtained by techniques known to one of
skill in the art, e.g., the techniques described in Sambrook et
al., "Molecular Cloning: A Laboratory Manual", 2nd edition, Cold
Spring Harbor Laboratory (1989). The variable heavy and light
regions of BC2 containing at least the CDR-encoding regions and
those portions of the acceptor mAb light and/or heavy variable
domain framework regions required in order to retain donor mAb
binding specificity, as well as the remaining
immunoglobulin-derived parts of the antibody chain derived from a
human immunoglobulin, are obtained using polynucleotide primers and
reverse transcriptase. The CDR-encoding regions are identified
using a known database and by comparison to other antibodies.
[0090] A mouse/human chimeric antibody may then be prepared and
assayed for binding ability. Such a chimeric antibody contains the
entire non-human donor antibody V.sub.H and V.sub.L regions, in
association with human Ig constant regions for both chains.
[0091] Homologous framework regions of a heavy chain variable
region from a human antibody are identified using computerized
databases, e.g., KABAT.RTM., and a human antibody having homology
to BC2 is selected as the acceptor antibody. The sequences of
synthetic heavy chain variable regions containing the BC2
CDR-encoding regions within the human antibody frameworks are
designed with optional nucleotide replacements in the framework
regions to incorporate restriction sites. This designed sequence is
then synthesized using long synthetic oligomers. Alternatively, the
designed sequence can be synthesized by overlapping
oligonucleotides, amplified by polymerase chain reaction (PCR), and
corrected for errors. A suitable light chain variable framework
region can be designed in a similar manner.
[0092] A humanized antibody may be derived from the chimeric
antibody, or preferably, made synthetically by inserting the donor
mAb CDR-encoding regions from the heavy and light chains
appropriately within the selected heavy and light chain framework.
Alternatively, a humanized antibody of the invention may be
prepared using standard mutagenesis techniques. Thus, the resulting
humanized antibody contains human framework regions and donor mAb
CDR-encoding regions. There may be subsequent manipulation of
framework residues. The resulting humanized antibody can be
expressed in recombinant host cells, e.g., COS, CHO or myeloma
cells. Other humanized antibodies may be prepared using this
technique on other suitable Factor IX-specific or other coagulation
factor-specific, self-limiting, neutralizing, high affinity,
non-human antibodies.
[0093] A conventional expression vector or recombinant plasmid is
produced by placing these coding sequences for the altered antibody
in operative association with conventional regulatory control
sequences capable of controlling the replication and expression in,
and/or secretion from, a host cell. Regulatory sequences include
promoter sequences, e.g., CMV promoter, and signal sequences, which
can be derived from other known antibodies. Similarly, a second
expression vector can be produced having a DNA sequence which
encodes a complementary antibody light or heavy chain. Preferably,
this second expression vector is identical to the first except with
respect to the coding sequences and selectable markers, in order to
ensure, as much as possible, that each polypeptide chain is
functionally expressed. Alternatively, the heavy and light chain
coding sequences for the altered antibody may reside on a single
vector.
[0094] A selected host cell is co-transfected by conventional
techniques with both the first and second vectors (or simply
transfected by a single vector) to create the transfected host cell
of the invention comprising both the recombinant or synthetic light
and heavy chains. The transfected cell is then cultured by
conventional techniques to produce the engineered antibody of the
invention. The humanized antibody which includes the association of
both the recombinant heavy chain and/or light chain is screened
from culture by an appropriate assay such as ELISA or RIA. Similar
conventional techniques may be employed to construct other altered
antibodies and molecules of this invention.
[0095] Suitable vectors for the cloning and subcloning steps
employed in the methods and construction of the compositions of
this invention may be selected by one of skill in the art. For
example, the pUC series of cloning vectors, such as pUC19, which is
commercially available from supply houses, such as Amersham or
Pharmacia, may be used. Additionally, any vector which is capable
of replicating readily, has an abundance of cloning sites and
selectable genes (e.g., antibiotic resistance) and is easily
manipulated may be used for cloning. Thus, the selection of the
cloning vector is not a limiting factor in this invention.
[0096] Similarly, the vectors employed for expression of the
engineered antibodies according to this invention may be selected
by one of skill in the art from any conventional vector. The
vectors also contain selected regulatory sequences (such as CMV
promoters) which direct the replication and expression of
heterologous DNA sequences in selected host cells. These vectors
contain the above-described DNA sequences which code for the
engineered antibody or altered immunoglobulin coding region. In
addition, the vectors may incorporate the selected immunoglobulin
sequences modified by the insertion of desirable restriction sites
for ready manipulation.
[0097] The expression vectors may also be characterized by genes
suitable for amplifying expression of the heterologous DNA
sequences, e.g., the mammalian dihydrofolate reductase gene (DHFR).
Other preferable vector sequences include a poly A signal sequence,
such as from bovine growth hormone (BGH) and the betaglobin
promoter sequence (betaglopro). The expression vectors useful
herein may be synthesized by techniques well known to those skilled
in this art.
[0098] The components of such vectors, e.g., replicons, selection
genes, enhancers, promoters, signal sequences and the like, may be
obtained from commercial or natural sources or synthesized by known
procedures for use in directing the expression and/or secretion of
the product of the recombinant DNA in a selected host. Other
appropriate expression vectors of which numerous types are known in
the art for mammalian, bacterial, insect, yeast and fungal
expression may also be selected for this purpose.
[0099] The present invention also encompasses a cell line
transfected with a recombinant plasmid containing the coding
sequences of the engineered antibodies or altered immunoglobulin
molecules thereof. Host cells useful for the cloning and other
manipulations of these cloning vectors are also conventional.
However, most desirably, cells from various strains of E. coli are
used for replication of the cloning vectors and other steps in the
construction of altered antibodies of this invention.
[0100] Suitable host cells or cell lines for the expression of the
engineered antibody or altered antibody of the invention are
preferably mammalian cells such as CHO, COS, a fibroblast cell
(e.g., 3T3) and myeloid cells, and more preferably a CHO or a
myeloid cell. Human cells may be used, thus enabling the molecule
to be modified with human glycosylation patterns. Alternatively,
other eukaryotic cell lines may be employed. The selection of
suitable mammalian host cells and methods for transformation,
culture, amplification, screening and product production and
purification are known in the art. See, e.g., Sambrook et al.,
supra.
[0101] Bacterial cells may prove useful as host cells suitable for
the expression of the recombinant Fabs of the present invention
(see, e.g., Pluckthun, A., Immunol. Rev., 130, 151-188 (1992)).
However, due to the tendency of proteins expressed in bacterial
cells to be in an unfolded or improperly folded form or in a
non-glycosylated form, any recombinant Fab produced in a bacterial
cell would have to be screened for retention of antigen binding
ability. If the molecule expressed by the bacterial cell was
produced in a properly folded form, that bacterial cell would be a
desirable host. For example, various strains of E. coli used for
expression are well-known as host cells in the field of
biotechnology. Various strains of B. subtilis, Streptomyces, other
bacilli and the like may also be employed.
[0102] Where desired, strains of yeast cells known to those skilled
in the art are also available as host cells, as well as insect
cells, e.g. Drosophila and Lepidoptera and viral expression
systems. See, e.g. Miller et al., Genetic Engineering, 8, 277-298,
Plenum Press (1986) and references cited therein.
[0103] The general methods by which the vectors of the invention
may be constructed, the transfection methods required to produce
the host cells of the invention, and culture methods necessary to
produce the altered antibody of the invention from such host cell
are all conventional techniques. Likewise, once produced, the
altered antibodies of the invention may be purified from the cell
culture contents according to standard procedures of the art,
including ammonium sulfate precipitation, affinity columns, column
chromatography, gel electrophoresis and the like. Such techniques
are within the skill of the art and do not limit this
invention.
[0104] Yet another method of expression of the humanized antibodies
may utilize expression in a transgenic animal, such as described in
U.S. Pat. No. 4,873,316. This relates to an expression system using
the animal's casein promoter which when transgenically incorporated
into a mammal permits the female to produce the desired recombinant
protein in its milk.
[0105] Once expressed by the desired method, the engineered
antibody is then examined for in vitro activity by use of an
appropriate assay. Presently, conventional ELISA assay formats are
employed to assess qualitative and quantitative binding of the
engineered antibody to Factor IX or to other appropriate
coagulation factors. Additionally, other in vitro assays may also
be used to verify neutralizing efficacy prior to subsequent human
clinical studies performed to evaluate the persistence of the
engineered antibody in the body despite the usual clearance
mechanisms.
[0106] Following the procedures described for humanized antibodies
prepared from BC2, one of skill in the art may also construct
humanized antibodies from other donor antibodies, variable region
sequences and CDR peptides described herein. Engineered antibodies
can be produced with variable region frameworks potentially
recognized as "self" by recipients of the engineered antibody.
Minor modifications to the variable region frameworks can be
implemented to effect large increases in antigen binding without
appreciable increased immunogenicity for the recipient. Such
engineered antibodies may effectively treat a human for coagulation
factor-mediated conditions. Such antibodies may also be useful in
the diagnosis of such conditions.
[0107] This invention also relates to a method for inhibiting
thrombosis in an animal, particularly a human, which comprises
administering an effective dose of an anti-coagulation factor
monoclonal antibody having self-limiting neutralizing activity.
Preferably, the coagulation factor is from the intrinsic or common
coagulation pathway. Most preferably, the anti-coagulation factor
monoclonal antibody is an anti-Factor IX, anti-Factor Ixa,
anti-Factor X, anti-Factor Xa, anti-Factor XI, anti-Factor XIa,
anti-Factor VIII, anti-Factor VIIIa, anti-Factor V, anti-Factor Va,
anti-Factor VII, anti-Factor VIIa or anti-thrombin. The mAb can
include one or more of the engineered antibodies or altered
antibodies described herein or fragments thereof.
[0108] Alternatively, acetylsalicylic acid can be administered in
combination with the anti-coagulation factor monoclonal antibody.
In some cases, combination therapy lowers the therapeutically
effective dose of anti-coagulation factor monoclonal antibody.
[0109] The therapeutic response induced by the use of the molecules
of this invention is produced by the binding to the respective
coagulation factor and the subsequent self-limiting inhibition of
the coagulation cascade. Thus, the molecules of the present
invention, when in preparations and formulations appropriate for
therapeutic use, are highly desirable for persons susceptible to or
experiencing abnormal clotting activity associated with, but not
limited to, myocardial infarction, unstable angina, atrial
fibrillation, stroke, renal damage, pulmonary embolism, deep vein
thrombosis and artificial organ and prosthetic implants.
[0110] The altered antibodies, antibodies and fragments thereof of
this invention may also be used in conjunction with other
antibodies, particularly human mabs reactive with other markers
(epitopes) responsible for the condition against which the
engineered antibody of the invention is directed.
[0111] The therapeutic agents of this invention are believed to be
desirable for treatment of abnormal clotting conditions from about
1 day to about 3 weeks, or as needed. This represents a
considerable advance over the currently used anticoagulants heparin
and warfarin. The dose and duration of treatment relates to the
relative duration of the molecules of the present invention in the
human circulation, and can be adjusted by one of skill in the art
depending upon the condition being treated and the general health
of the patient.
[0112] The mode of administration of the therapeutic agent of the
invention may be any suitable route which delivers the agent to the
host. The altered antibodies, antibodies, engineered antibodies,
and fragments thereof, and pharmaceutical compositions of the
invention are particularly useful for parenteral administration,
i.e., subcutaneously, intramuscularly, intravenously or
intranasally.
[0113] Therapeutic agents of the invention may be prepared as
pharmaceutical compositions containing an effective amount of the
engineered (e.g., humanized) antibody of the invention as an active
ingredient in a pharmaceutically acceptable carrier. Alternatively,
the pharmaceutical compositions of the invention could also contain
acetysalicylic acid. In the prophylactic agent of the invention, an
aqueous suspension or solution containing the engineered antibody,
preferably buffered at physiological pH, in a form ready for
injection is preferred. The compositions for parenteral
administration will commonly comprise a solution of the engineered
antibody of the invention or a cocktail thereof dissolved in an
pharmaceutically acceptable carrier, preferably an aqueous carrier.
A variety of aqueous carriers may be employed, e.g., 0.4% saline,
0.3% glycine and the like. These solutions are sterile and
generally free of particulate matter. These solutions may be
sterilized by conventional, well known sterilization techniques
(e.g., filtration). The compositions may contain pharmaceutically
acceptable auxiliary substances as required to approximate
physiological conditions such as pH adjusting and buffering agents,
etc. The concentration of the antibody of the invention in such
pharmaceutical formulation can vary widely, i.e., from less than
about 0.5%, usually at or at least about 1% to as much as 15 or 20%
by weight and will be selected primarily based on fluid volumes,
viscosities, etc., according to the particular mode of
administration selected.
[0114] Thus, a pharmaceutical composition of the invention for
intramuscular injection could be prepared to contain 1 mL sterile
buffered water, and between about 1 ng to about 100 mg, e.g. about
50 ng to about 30 mg or more preferably, about 5 mg to about 25 mg,
of an engineered antibody of the invention. Similarly, a
pharmaceutical composition of the invention for intravenous
infusion could be made up to contain about 250 ml of sterile
Ringer's solution, and about 1 mg to about 30 mg and preferably 5
mg to about 25 mg of an engineered antibody of the invention.
Actual methods for preparing parenterally administrable
compositions are well known or will be apparent to those skilled in
the art and are described in more detail in, for example,
"Remington's Pharmaceutical Science", 15th ed., Mack Publishing
Company, Easton, Pa.
[0115] It is preferred that the therapeutic agent of the invention,
when in a pharmaceutical preparation, be present in unit dose
forms. The appropriate therapeutically effective dose can be
determined readily by those of skill in the art. To effectively
treat a thrombotic or embolic disorder in a human or other animal,
one dose of approximately 0.1 mg to approximately 20 mg per kg body
weight of a protein or an antibody of this invention should be
administered parenterally, preferably i.v. or i.m. Such dose may,
if necessary, be repeated at appropriate time intervals selected as
appropriate by a physician during the thrombotic response.
[0116] The antibodies, altered antibodies or fragments thereof
described herein can be lyophilized for storage and reconstituted
in a suitable carrier prior to use. This technique has been shown
to be effective with conventional immunoglobulins and art-known
lyophilization and reconstitution techniques can be employed.
[0117] The present invention will now be described with reference
to the following specific, non-limiting examples.
EXAMPLE 1
Preparation and Screening of Anti-Factor IX Monoclonal
Antibodies
[0118] Female Balb/C mice were injected with human factor Ix
purified as described in Jenny, R. et al., Prep. Biochem. 16,
227-245 (1986). Typically, each mouse received an initial injection
of 100 ug protein dissolved in 0.15 mL phosphate-buffered saline
(PBS) and mixed with 0.15 mL complete Freund's adjuvant. Booster
immunizations of 50 ug protein in 0.15 mL PBS with 0.15 mL
incomplete Freund's adjuvant were given approximately biweekly over
a 2-3 month period. After the final boost, the mouse received 50 ug
of Factor IX in PBS three days before spleen/myeloma cell fusions.
Spleen cells were isolated from an immunized mouse and fused with
NS-1 myeloma cells (Kohler, G. et al., Eur. J. Immunol. 6, 292-295
(1976)) using polyethylene glycol as described by Oi, V. T. et al.
in "Selected Methods in Cellular Immunology," Mishell, B. B. and
Shigii, S. M., eds., Freeman Press, San Francisco. Following the
fusion, the cells were resuspended in RPMI 1640 media containing
10% fetal calf sera and aliquots were placed in each well of four
24-well plates containing 0.5 mL of peritoneal lavage
cell-conditioned media. On the following day, each well received
1.0 mL of 2.times.10.sup.-4 M hypoxanthine, 8.times.10.sup.-7 M
aminopterin and 3.2.times.10.sup.-5 M thymidine in RPMI 1640 media
containing 10% fetal calf sera. The cells were fed every 3-4 days
by removing half of the media and replacing it with fresh media
containing 1.times.10.sup.-4 M hypoxanthine and 1.6.times.10.sup.-5
M thymidine.
[0119] Approximately two weeks later, 1.0 mL of hybridoma medium
was removed from each well and tested for anti-Factor IX antibodies
using an ELISA assay as described by Jenny, R. J. et al. in Meth.
Enzymol. 222, 400-416 (1993). Briefly, factor IX was immmobilized
onto plastic wells of 96-well microtiter plates. Hybridoma
supernatants or dilutions of purified antibody were then incubated
in the wells. The wells were washed and the presence of
antibody-antigen complexes detected with a goat anti-murine
immunoglobulin second antibody conjugated to horseradish peroxidase
and the chromogenic substrate o-dianisidine.
[0120] Wells containing anti-Factor IX antibodies were subcloned by
limiting dilution and grown in 96-well plates. Supernatant from the
cloned hybridoma cell cultures were screened for antibody to Factor
IX by the ELISA assay described above and cells from positive
hybridomas were expanded, frozen, stored in liquid nitrogen and
then grown as ascitic tumors in mice.
EXAMPLE 2
Self-Limiting Effect of Anti-Coagulation Factor Antibodies in
Coagulation
[0121] The effect of increasing concentrations of anti-coagulation
factor antibodies on activated partial thromboplastin time (aPTT)
of human plasma was determined in a fibrometer (Becton-Dickinson
Microbiology Systems, Cockeysville, Md.) using Baxter reference
procedure LIB0293-J, 3/93 revision (Baxter Scientific, Edison,
N.J.).
[0122] Prior to the start of the experiment, 2 to 3 mL of 0.02 M
CaCl.sub.2 in a 5 mL tube were placed into the heating chamber of
the fibrometer. Human plasma samples were either freshly drawn and
kept on ice or reconstituted per the manufacturer's recommendation
from Hemostasis Reference Plasma (American Diagnostics, Greenwich,
Conn.).
[0123] Unfractionated heparin from porcine intestinal mucosa (Sigma
Chemical, St. Louis, Mo.), low molecular weight heparin from
porcine intestinal mucosa (Lovenox.RTM., enoxaparin sodium,
Rhone-Poulenc Rorer Pharmaceuticals, Collegeville, Pa.) or mAb
anticoagulants were prepared as approximately 50 uM stock solutions
and serially diluted directly into the test plasma. A blank
containing plasma without anticoagulant was included as a
reference.
[0124] Two fibroTube.RTM. fibrometer cups were filled with 100 ul
test plasma or 100 ul test plasma with anticoagulant and 125 ul of
actin activated cephaloplastin reagent (Actin reagent, from rabbit
brain cephalin in ellagic acid, available from Baxter Scientific),
respectively and placed in the fibrometer wells at 37.degree.
C.
[0125] After one minute, 100 ul of actin reagent was transferred to
a plasma-containing cup and the contents mixed several times with a
pipette. After a 3 minute incubation, 100 ul of CaCl.sub.2,,
prewarmed at 37.degree. C., was added to the plasma-actin reagent
mixture using a Automatic Pipette/Timer-trigger (Becton-Dickinson).
The clotting times were noted and the results in FIG. 1 are
presented as clotting times as a function of final concentrations
of anticoagulant in the total assay volume of 300 ul. The nominal
concentration of Factor IX in the assay is 30-40 nM.
[0126] The results shown in FIG. 1 demonstrate the effect of
increasing concentrations of the murine anti-Factor IX mAbs BC1 and
BC2 on aPTT clotting times. Both mAbs inhibit clotting by
prolonging the aPTT and both mabs reach a final saturating effect
on the aPTT. The IC.sub.50 values are similar at .about.35 nM and
.about.50 nM for BC1 and BC2, respectively, but the difference in
the maximum response to the two antibodies is marked. Saturating
concentrations of BC1 increases the aPTT by about 50% to .about.40
sec. BC2, on the other hand, increases the aPTT by 3.5-fold to
about 90 sec. The therapeutic target zone used in anticoagulant
therapy with heparin is highlighted. The results indicate that the
two mAbs bracket the heparin therapeutic aPTT range.
[0127] The properties of mAbs BC1 and BC2 are summarized in Table
I. Each of the BC mAbs recognizes both the zymogen, Factor IX, as
well as the active protease, Factor IXa, but only BC2 is capable of
blocking both zymogen activation as well as protease activity. BC1
and BC2 were found to cross-react with Cynomologous monkey Factor
IX. Additionally, BC2 also cross-reacted with rat Factor IX.
1TABLE I Summary of in vitro Properties of Anti-Factor IX mAbs BC1
BC2 Binds Factor IX yes yes Binds Factor IXa yes yes Inhibits IX to
IXa no yes conversion Inhibits IXa activity yes yes in Xase complex
Cofactor requirement none divalent metals Ca.sup.2+ > Mn.sup.2+
1 aPTTTmax AaPTTnormal .times. 100 % 150 350 IC.sub.50, nM
.about.35 .about.50 Species cross- monkey rat, monkey reactivity
Isotype IgG1 IgG2a
[0128] The results shown in FIG. 2 demonstrate the effect of
increasing concentrations of the anti-Factor IX mAbs 9E4(2)F4 and
11G4(1)B9 on aPTT clotting times. The plasma for the assay was
diluted to one-half the normal concentration, giving an initial
aPTT of 45 seconds. Both mAbs inhibit clotting by prolonging the
aPTT and both mAbs reach a final saturating effect on the aPTT.
Saturating concentrations of 9E4(2)F4 and 11G4(1)B9 increases the
aPTT to .about.90 to 100 seconds for 9E4(2)F4 and to .about.80
seconds for 11G4(1)B9. The results indicate that the two mAbs are
at the upper end of the heparin therapeutic aPTT range.
[0129] The results shown in FIG. 3 demonstrate the effect of
increasing concentrations of the anti-Factor X mAbs HFXLC (vs.
light chain epitope), HFXHC (vs. heavy chain epitope) and the
anti-Factor XI mab HFXI on aPTT clotting times. These mAbs were
obtained from Enzyme Research Laboratories (South Bend, IN). The
mabs HFXLC and HFXI inhibit clotting by prolonging the aPTT and
both mAbs reach a final saturating effect on the aPTT. The
IC.sub.50 value for HFXLC is .about.40 nM; saturating
concentrations increase the aPTT to .about.60 seconds. The
IC.sub.50 value for HFXI is .about.20 nM; saturating concentrations
increase the aPTT to .about.100 seconds. The results indicate that
HFXLC is within the heparin therapeutic aPTT range while HFXI falls
at the upper end of the heparin therapeutic range. The mAb HFXHC
had no effect on aPTT clotting times.
[0130] Self-limiting prolongation of the aPTT was also observed
with antibodies to Factor VIII, the cofactor to Factor IXa. For
example, the anti-human Factor VIII antibody, SAF8C-IG, purchased
from Affinity Biologicals, Inc., increased the aPTT to a maximum of
about 65 sec. Half-maximal prolongation of the aPTT was achieved
with about 100 nM antibody.
EXAMPLE 3
Efficacy of murine Factor IX mAbs in Rat Thrombus Model
[0131] In order to evaluate the efficacy of anti-Factor IX
antibodies in prevention of arterial thrombosis, the rat carotid
artery thrombosis model as reported by Schumacher et al. in J.
Cardio. Pharm. 22, 526-533 (1993) was adapted. This model consists
of segmental injury to the carotid endothelium by oxygen radicals
generated by FeCl.sub.3 solution applied on the surface of the
carotid artery.
[0132] In brief, rats were anesthetized with pentobarbitone sodium,
the jugular vein cannulated for intravenous injections and the left
femoral artery cannulated for blood pressure and heart rate
monitoring. The carotid artery was isolated by aseptic technique
via a surgical incision in the neck and equipped with a magnetic
flow probe for blood flow measurement. After a period of
stabilization, baseline parameters were established for the
following variables: carotid blood flow, arterial pressure, heart
rate, activated partial thromboplastin time (aPTT) and prothrombin
time (PT). Thereafter, a premeasured Whatman filter paper soaked in
50% FeCl.sub.3 solution was placed on the carotid artery for 15
minutes for complete injury of the underlying endothelial cells.
After removal of the FeCl.sub.3 soaked paper, the experiment was
followed to completion over 60 minutes. At the end of the
experiment, the carotid thrombus was extracted from the carotid
artery and weighed.
[0133] All agents were administered 15 minutes prior to the onset
of carotid injury. The following treatments were examined and
compared to the Factor IX mAb BC2.
[0134] 1. Heparin: 15, 30, 60 or 120 U/kg bolus, followed by
infusion of 0.5, 1, 2 or 4 U/kg/min, respectively over 60
minutes
[0135] 2. Acetylsalicylic acid (ASA, aspirin): 5 mg/kg bolus
[0136] 3. Anti-Factor IX mAb BC2: 1, 3 or 6 mg/kg bolus, followed
by infusion 0.3, 1, or 2 ug/kg/min, respectively over 60
minutes
[0137] 4. Heparin: 30U/kg bolus+lU/kg/min+ASA at 5 mg/kg
[0138] 5. Anti-Factor IX mAb BC2: 1 mg/kg+0.3 ug/kg/min+ASA at 5
mg/kg
[0139] FIGS. 4 and 5 demonstrate the comparative pharmacology of
the anti-coagulant/thrombotic regimens by showing the effect of
heparin, ASA and Factor IX mAb BC2 on aPTT (FIG. 4) and PT (FIG.
5).
[0140] The key index for bleeding diathesis, aPTT, was used as the
primary criterion for evaluation of efficacy versus bleeding
liabilities of the anti-coagulant/thrombotic agents used in the
study. The results in FIG. 4 demonstrate the dose-dependent
prolongation of aPTT by heparin with maximal prolongation of the
clotting time, beyond the test limit, at the two higher doses. ASA
alone did not significantly increase aPTT but in combination with
heparin, a marked synergistic effect was observed. The Factor IX
mAbs had a modest effect on aPTT and even at the highest dose, the
increase in clotting time did not exceed the 3-fold limit of
standard anti-coagulant practiced clinically. Most notably, the low
dose of Factor IX mAb BC2 in combination with ASA did not change
the aPTT.
[0141] In FIG. 5, the data indicate that PT was also significantly
prolonged by heparin, at the two higher doses, and by the
ASA+heparin combination, but not by any of the Factor IX mAb doses
alone or in combination with ASA.
[0142] The effect of heparin, ASA and Factor IX mAb on carotid
artery occlusion is shown in FIG. 6. The results indicate that the
carotid arteries of all of the vehicle-treated animals occlude in
response to the injury. Heparin dose dependently inhibited the
occlusion of the carotid artery. At the highest dose, heparin
completely prevented the occlusion of the carotid artery; at this
dose however, no coagulation could be initiated. ASA alone had only
a minor effect on carotid occlusion. ASA in combination with
heparin also failed to completely prevent carotid occlusion. Factor
IX mAb completely blocked carotid occlusion at the two higher
doses, which have not prolonged coagulation beyond the clinically
desired target. The lower dose of Factor IX mAb, that largely
failed to secure patency alone, demonstrated complete inhibition of
carotid occlusion when administered in combination with ASA.
[0143] The effect of heparin, ASA and Factor IX mAb on thrombus
weight is shown in FIG. 7. Heparin dose-dependently reduced
thrombus mass in the carotid artery. However, some residual
thrombus was still found in the carotid artery in spite of complete
blockade of coagulation. ASA alone or in combination with heparin
(30 U/kg regimen) had only a partial effect on thrombus weight.
Factor IX mAb dose-dependently reduced thrombus mass and the high
dose virtually prevented completely thrombus formation. Moreover,
the combination of the low dose anti-Factor IX mAb and ASA, a
regimen that completely prevented carotid occlusion without
adversely affecting the coagulation indices, completely prevented
thrombus formation.
[0144] The studies conducted in the rat carotid thrombosis model
clearly demonstrate the efficacy of Factor IX mAb in prevention of
thrombosis in a highly thrombogenic arterial injury model. Most
notably, the efficacy of the Factor IX mAb was demonstrated within
the desired therapeutic anticoagulant target defined by the aPTT.
Furthermore, heparin, the current standard anticoagulant, reached
efficacy comparable to Factor IX mAb only at doses that severely
compromised coagulation to the extent of producing non-coagulable
blood. Interestingly, the observed potentiation and synergy
acquired by ASA joint treatment with heparin was also demonstrated
when ASA was given with anti-Factor IX mAb. However, unlike the
combination of heparin and ASA which resulted in potentiation of
both the anti-thrombotic and anti-coagulant effects, the
combination of Factor IX mAb and ASA resulted in potentiation of
the anti-thrombotic efficacy with no consistent effect on ex vivo
blood coagulation parameters. Taken together, the data show a
superior antithrombotic capacity of Factor IX mAb compared to
heparin, ASA or a combination of heparin and ASA.
EXAMPLE 4
Scanning Electron Microscopy of Rat Thrombosis Model
[0145] Segments of rat carotid artery were collected from sham,
ferric chloride only and ferric chloride+6 mg/kg Factor IX
antibody, 3/group, 15 minutes after application of ferric chloride.
The arteries were fixed by perfusion with formaldehyde and ligated
above and below the lesioned area. Fixed arteries were dehydrated,
incubated in hexamethyldisilazane and dried in a desiccator. Dried
arteries were opened lengthwise, placed on Scanning Electron
Microscopy (SEM) stubs and sputter coated with gold.
[0146] SEM of sham arteries revealed an essentially normal
endothelium with rare scattered platelets. There were a few breaks
in the endothelium, probably as a result of mechanical damage
during surgery and the underlying basement membrane was covered by
a carpet of platelets. No evidence of thrombus formation was
observed in the sham rats.
[0147] SEM of the arteries treated with ferric chloride revealed
large mural thrombi which occupied a large portion of the lumen of
the vessel. The thrombi were composed of aggregated platelets, red
blood cells and amorphous and fibrillar proteinaceous material. The
proteinaceous material is consistent with fibrin. The endothelium
of the arteries was mostly obscured by the large thrombi. Where
visible, the endothelium overlying the region treated with ferric
chloride was covered by numerous adherent platelets and amorphous
proteinaceous material.
[0148] SEM of the arteries treated with ferric chloride from rats
also treated with Factor IX antibody, revealed the lumen of the
vessels to be largely free of thrombus. The endothelium overlying
the region treated with ferric chloride showed extensive damage and
some areas were covered by adherent platelets and platelet
aggregates but there was little or no proteinaceous material.
EXAMPLE 5
Anti-Factor IX mAb BC2 Heavy and Light Chain cDNA Sequence
Analysis
[0149] Total RNA was purified by using TriReagent (Molecular
Research Center, Inc., Cincinnati, Ohio) according to the
manufacturer's protocol. RNA was precipitated with isopropanol and
dissolved in 0.5% SDS and adjusted to 0.5M NaCl. Poly A+RNA was
isolated with Dynabeads Oligo (dT).sub.25 (Dynal A. S., Lake
Success, NY) according to the manufacturer's protocol. Poly A+RNA
was eluted from the beads and resuspended in TE buffer. Twelve
aliquots of 100 ng of RNA were reverse transcribed with a RT-PCR
kit per the manufacturer's instructions (Boehringer Mannheim Cat.
No. 1483-188) using a dT oligo for priming. For the heavy chain,
PCR amplifications of 6 RNA/DNA hybrids were carried out for 25
cycles using a murine IgG2a hinge primer (SEQ ID NO: 1) and a heavy
chain signal sequence primer (SEQ ID NO: 2). Similarly, for the
light chain, PCR amplificatons of 6 RNA/DNA hybrids were carried
out for 25 cycles using a murine kappa primer (SEQ ID NO: 3) and a
degenerate light chain signal sequence primer (SEQ ID NO: 4). The
PCR products from each of the 12 amplifications were ligated in a
PCR2000 vector (TA cloning Kit, Invitrogen, Cat. No. K2000-01).
Colonies of recombinant clones were randomly picked and
minipreparations of plasmid DNA were prepared using an alkaline
extraction procedure described by Birnboim and Doly in Nucl. Acids
Res. 7, 1513 (1979). The isolated plasmid DNA was digested with
EcoRI and analyzed on a 0.8% agarose gel. Double-stranded cDNA
inserts of the appropriate size, i.e., .about.700 bp for the heavy
chain and .about.700 bp for the light chain, were sequenced by a
modification of the Sanger method. The sequence of all 12 of the
heavy and light chains were compared to generate a consensus BC2
heavy chain variable region sequence (SEQ ID NO: 5)and consensus
BC2 light chain variable region sequence (SEQ ID NO: 6).
[0150] Sequence analysis of the BC2 heavy chain variable region
cDNA revealed a 363 nucleotide open reading frame encoding a 121
amino acid sequence (SEQ ID NO: 7). The heavy chain CDR1, 2 and 3
sequences are listed in SEQ ID NOs: 8, 9 and 10, respectively.
[0151] Sequence analysis of the BC2 light chain variable region
cDNA revealed a 321 nucleotide open reading frame encoding a 107
amino acid sequence (SEQ ID NO: 11). The light chain CDR1, 2 and 3
sequences are listed in SEQ ID NOs: 12, 13 and 14,
respectively.
EXAMPLE 6
Humanized Antibodies
[0152] Six humanized antibodies designated SB 249413, SB 249415, SB
249416, SB249417, SB 257731 and SB 257732 were designed to contain
the murine CDRs described above in a human antibody framework.
[0153] SB 249413
[0154] SB 249413 contains the heavy chain F9HZHC 1-0 and the light
chain F9HZLC 1-0. The synthetic variable region humanized heavy
chain F9HZHC 1-0 was designed using the first three framework
regions of the heavy chain obtained from immunoglobulin RF-TS3' CL
(Capra, J. D. et al., J. Clin. Invest. 86, 1320-1328 (1990)
identified in the Kabat database as Kabpro:Hhc10w) and the BC2
heavy chain CDRs described previously. No framework amino acids
substitutions which might influence CDR presentation were made.
Four overlapping synthetic oligonucleotides were generated (SEQ ID
NOs: 15, 16, 17 and 18) which, when annealed and extended, code for
the amino acids representing the heavy chain variable region
through and including CDR3 (SEQ ID NOs: 19 and 20). This synthetic
gene was then amplified using PCR primers (SEQ ID NOs: 21 and 22)
and ligated into the pCR2000 vector (TA cloning Kit, Invitrogen,
Cat. No. K2000-01) and isolated from a SpeI, KpnI restriction
digest. A second DNA fragment coding for the campath signal
sequence including the first five amino acids of the variable
region (SEQ ID NOs: 23 and 24) was made by PCR amplification of the
appropriate region of a construct encoding a humanized
anti-Respiratory Syncitial Virus heavy chain (SEQ ID NO: 25) with
two primers (SEQ ID NOs: 26 and 27) and digesting with the
restriction enzymes EcoRI and SpeI. The two fragments generated
were ligated into an EcoRI, KpnI digested pFHZHC2-6pCD mammalian
cell expression vector which contained the remainder of a human
consensus framework 4 and IgG1 constant region. The vector
contained a single amino acid mutation of the pFHZHC2-3pCD vector
described in published International Patent Application No.
WO94/05690. The final residue of framework 2 (residue 49) was
mutated from Ser to Ala by digesting pFHZHC2-3pCD with XbaI and
EcoR5 and inserting a linker generated from two synthetic
oligonucleotides (SEQ ID NOs: 28 and 29). The sequence of the
F9HZHC 1-0 insert is shown in SEQ ID NOs: 30 and 31.
[0155] The synthetic variable region humanized light chain F9HZLC
1-0 was designed using the framework regions of the human light
chain obtained from immunoglobulin LS8'CL (Carmack et al., J. Exp.
Med. 169, 1631-1643 (1989) identified in the Kabat database as
Kabpro:Hk1318) and the BC2 light chain CDRs described previously.
No framework amino acids substitutions which might influence CDR
presentation were made. Two overlapping synthetic oligonucleotides
were generated (SEQ ID NOs: 32 and 33) which, when annealed and
extended, code for amino acids representing the light chain
variable region (SEQ ID NOs: 34 and 35). This synthetic gene was
then amplified using PCR primers (SEQ ID NOs: 36 and 37) and
ligated into the pCR2000 vector (TA cloning Kit, Invitrogen, Cat.
No. K2000-01), and isolated from a ScaI, SacII restriction digest.
A second DNA fragment coding for the campath signal sequence
including the first two amino acids of the variable region (SEQ ID
NOs: 38 and 39) was made by PCR amplification of the the
appropriate region of a construct encoding a humanized
anti-Respiratory Syncitial Virus heavy chain (SEQ ID NO: 25) with
the two primers (SEQ ID NOs: 26 and 40) and digesting with the
restriction enzymes EcoRI and ScaI. The two fragments generated
were ligated into an EcoRI, SacII digested pFHzLC1-2pCN mammalian
cell expression vector which contained the remainder of a human
framework 4 and kappa constant region. The vector contained a
single amino acid mutation of the pFHZLC1-1pCN vector described in
published International Patent Application No. WO94/05690. A
framework 2 residue was mutated from Ser to Pro by digesting
pFHZLC1-pCN with SmaI and Kpn1 and inserting a linker generated
from two synthetic oligonucleotides (SEQ ID NOs: 41 and 42). The
sequence of the F9HZLC 1-0 insert is shown in SEQ ID NOs: 43 and
44.
[0156] SB 249415
[0157] SB 249415 contains the heavy chain F9HZHC 1-1 and the light
chain F9HZLC 1-1. These heavy and light chain constructs are based
on F9HZHC 1-0 and F9HZLC 1-0, respectively, however, they have
framework amino acid substitutions which can influence CDR
presentation.
[0158] F9HZHC 1-1 has three framework amino acid substitutions
which might influence CDR presentation. Two overlapping synthetic
oligonucleotides were generated (SEQ ID NOs: 45 and 46), which when
annealed and extended, code for amino acids representing the
altered portion of the heavy chain variable region altered (SEQ ID
NOs: 47 and 48). This synthetic gene was then amplified using PCR
primers (SEQ ID NOs: 49 and 50), ligated into the pCR2000 vector
(TA cloning Kit, Invitrogen, Cat. No. K2000-01) and isolated from a
EcoNI, KpnI restriction digest. This fragment was ligated into
EcoNI, KpnI digested F9HZHC1-0 (SEQ ID NO: 30) vector. The sequence
of the F9HZHC 1-1 insert is shown in SEQ ID NOs: 51 and 52.
[0159] F9HZLC 1-1 has four framework amino acids substitutions
which can influence CDR presentation. Two synthetic
oligonucleotides were generated (SEQ ID NOs: 53 and 54), which when
annealed, have KpnI and BamHI cohesive ends, and code for amino
acids representing the altered portion of the light chain variable
region (SEQ ID NO: 55). F9HZLC 1-0 (SEQ ID NO: 43) was digested
with the restriction enzymes KpnI and BamHI and ligated to the
synthetic DNA. The sequence of the F9HZLC 1-1 insert is shown in
SEQ ID NOs: 56 and 57.
[0160] SB 249416
[0161] SB 249416 contains the heavy chain F9HZHC 1-1 (described
above) (SEQ ID NO: 52) and the light chain F9HZLC 1-2. The light
chain construct is based on F9HZLC 1-1, however, it has one
additional framework amino acid substitution which can influence
CDR presentation.
[0162] Two synthetic oligonucleotides were generated (SEQ ID NOs:
58 and 59), which when annealed, have BamHI and XbaI cohesive ends
and code for amino acids representing the altered portion of the
light chain variable region (SEQ ID NO: 60). F9HZLC 1-1 (SEQ ID NO:
56) vector was digested with the restriction enzymes BamHI and XbaI
and ligated to the synthetic DNA. The sequence of the F9HZLC 1-2
insert is shown in SEQ ID NOs: 61 and 62.
[0163] SB 249417
[0164] SB 249417 contains the heavy chain F9HZHC 1-1 (described
above) (SEQ ID NO: 52) and the light chain F9HZLC 2-0. A F9HZLC 2-0
synthetic variable region humanized light chain was designed using
the framework regions of the human light chain obtained from
immunoglobulin REI (Palm and Hilschmann, Z. Physiol. Chem. 354,
1651-1654 (1973) identified in the Kabat database as Kabpro:
HKL111) and the BC2 light chain CDRs described previously. Five
amino acid consensus human substitutions were introduced. Six
framework amino acids murine substitutions which can influence CDR
presentation were made. Two overlapping synthetic oligonucleotides
were generated (SEQ ID NOs: 63 and 64) which, when annealed and
extended, code for amino acids representing the light chain
variable region (SEQ ID NOs: 65 and 66). This synthetic gene was
then amplified using PCR primers (SEQ ID NOs: 67 and 68), ligated
into the pCR2000 vector (TA cloning Kit, Invitrogen, Cat. No.
K2000-01) and isolated from a ScaI, SacII restriction digest. A
second DNA fragment coding for the campath signal sequence
including the first two amino acids of the variable region (SEQ ID
NO: 38) was made by PCR amplification of the the appropriate region
of a construct encoding a humanized anti-Respiratory Syncitial
Virus heavy chain (SEQ ID NO: 25) with two primers (SEQ ID NOs: 26
and 69) and digesting with the restriction enzymes EcoRI and ScaI.
A third DNA fragment encoding the remainder of a human framework 4
(SEQ ID NO: 70) and having SacII and NarI cohesive ends was
generated by annealing two synthetic oligonucleotides (SEQ ID NOs:
71 and 72). F9HZLC 1-0 (SEQ ID NO: 43) was digested with the
restriction enzymes EcoRI and NarI and ligated to the three DNA
fragments. The sequence of the F9HZLC 2-0 insert is shown in SEQ ID
NOs: 73 and 74.
[0165] SB 257731
[0166] SB 257731 contains the heavy chain F9HZHC 1-1 (SEQ ID NO:
52) and the light chain F9HZLC 1-3, a single amino acid mutation of
F9HZLC 1-2 (SEQ ID NO: 62). F9HZLC 1-2 was PCR amplified with two
primers (SEQ ID NOs: 26 and 69) and digested with the restriction
enzymes EcoRI and ScaI. A 94 bp fragment (SEQ ID NOs: 75 and 76)
was isolated. The fragment was ligated into EcoRI, ScaI digested
F9HZLC 1-2 vector to produce the light chain construct F9HZLC 1-3.
The sequence of the F9HZLC 1-3 insert is shown in SEQ ID NOs: 77
and 78.
[0167] SB 257732
[0168] SB 257732 contains the synthetic variable region humanized
heavy chain F9HZHC 3-0 and light chain F9HZLC 3-0. Four overlapping
synthetic oligonucleotides were generated (SEQ ID NOs: 79, 80, 81
and 82) which, when annealed and extended, code for the amino acids
representing the heavy chain variable region being altered (SEQ ID
NOs: 83 and 84). This synthetic gene was then amplified using PCR
primers (SEQ ID NOs: 85 and 86), ligated into the pCR2000 vector
(TA cloning Kit, Invitrogen, Cat. No. K2000-01) and isolated from a
StuI, KpnI restriction digest. The isolated fragment was ligated
into StuI, KpnI digested F9HZHC1-1 (SEQ ID NO:
[0169] 52) vector. This vector was then digested with EcoRI, SpeI
to remove the signal sequence. A DNA fragment coding for the
campath signal sequence (SEQ ID NO: 23) including the first five
amino acids of the variable region was made by PCR amplification of
F9HZHC1-0 with two primers (SEQ ID NOs: 26 and 87) and digesting
with the restriction enzymes EcoRI and SpeI. The fragment generated
was ligated into the vector. The sequence of the F9HZHC3-0 insert
is shown in SEQ ID NOs: 88 and 89.
[0170] Four overlapping synthetic oligonucleotides were generated
(SEQ ID NOs: 90, 91, 92 and 93) which, when annealed and extended,
code for amino acids representing the light chain variable region
(SEQ ID NOs: 94 and 95). This synthetic gene was then amplified
using PCR primers (SEQ ID NOs: 96 and 97) and ligated into the
pCR2000 vector (TA cloning Kit, Invitrogen, Cat. No. K2000-01), and
isolated from a ScaI, NarI restriction digest. The isolated
fragment was ligated into ScaI, NarI digested F9HZLC1-3 (SEQ ID NO:
77) vector. The sequence of the F9HZLC3-0 insert is shown in SEQ ID
NOs: 98 and 99.
[0171] The humanized anti-Factor IX mAbs were expressed in CHO
cells. A DG-44 cell line adapted for suspension growth in
serum-free medium was grown in 100 ml of protein-free, medium
containing 1.times. nucleosides and 0.05% F68 in 250 ml disposable
sterile erlenmeyer flasks (Corning) on a Innova 2100 platform
shaker (New Brunswick Scientific) at 150 rpm at 37.degree. C. in a
5% CO.sub.2, 95% air humidified incubator. These cells were
passaged at 4.times.10.sup.5 cells/ml twice weekly. 15 ug each of
the pCN-Lc-Light Chain and pCD-Hc-heavy chain vectors were
linearized by digestion with Not1, co-precipitated under sterile
conditions and resuspended in 50 ul of 1.times. TE buffer (10 mM
Tris, 1 mM EDTA, pH 7.5). The DNA was electroporated using a
Bio-Rad Gene Pulser (Bio-Rad Laboratories) into the Acc-098 cells
using the technique of Hensley et al. in J. Biol. Chem. 269,
23949-23958 (1994). 1.2.times.10.sup.7 cells were washed once in
12.5 ml of ice cold PBSucrose (PBS, 272 mM sucrose, 7 mM sodium
phosphate pH 7.4, 1 mM MgCl.sub.2), resuspended in 0.8 ml of PBS,
added to 50 ul of the DNA solution and incubated on ice for 15 min.
The cells were pulsed at 380 V and 25 microfarads, then incubated
on ice for 10 min. Cells were plated into 96 well culture plates at
5.times.10.sup.5 cells/plate in maintenance medium for 24 hr prior
to selection. Cells were selected for resistance to 400ug/ml G418
(Geneticin, Life Technologies, Inc.) in maintenance medium. 24 hr
prior to assay, the cells were fed with 150 ul of the maintenance
medium.
[0172] Conditioned medium from individual colonies was assayed
using an electrochemiluminescence (ECL) detection method on an
Origen analyzer (IGEN, Inc.). See Yang et al., Biotechnology 12,
193-194 (1994).
[0173] All solutions necessary for the performance of the assays
(assay buffer) and for the operation of the analyzer (cell cleaner)
were obtained from IGEN. The antibodies (anti-human IgG (g-chain
specific), Sigma Chemicals and F(ab').sub.2 Fragment to Human IgG
(H+L), Kirkegaard & Perry Laboratories Inc.) were labelled with
TAG-NHS-ester (IGEN, Inc.) at a 7:1 molar ratio of TAG:protein,
while the Protein A (Sigma) was labelled with
Biotin-LC-Sulfo-NHS-ester (IGEN, Inc.) at a 20:1 molar ratio
Biotin:protein, both according to IGEN's recommendations.
Streptavidin-coated magnetic beads (M-280) were obtained from
Dynal.
[0174] Immunoassays were performed using the following protocol:
per sample, 50 ul of the Streptavidin-coated beads (final
concentration 600 ug/ml diluted in PBS, pH7.8, with 1.25% Tween)
were mixed with 50 ul Biotin-Protein A (final concentration
lug/diluted in PBS, pH7.8, with 1.25% Tween) and incubated at room
temperature for 15min with agitation, 50 ul of the TAG antibodies
(a mixture with a final concentration of 1.25 ug/ml F(ab').sub.2
Fragment to Human IgG (H+L) and 0.25 ug/ml Anti-Human IgG (g-chain
specific) diluted in PBS, pH7.8, with 1.25% Tween) were added, the
solution was then added to 50 ul of conditioned medium and
incubated with agitation at room temperature for 1 hr. 200 ul of
assay buffer was added to the reaction mix and the sample analyzed
on the Origen I analyzer to measure ECL. The results indicated that
approximately 20-37% of the colonies assayed secrete over 15 ng/ml
of the antibody with an average expression of about 150 ng/ml.
[0175] Humanized anti-Factor IX mAbs were purified from the
conditioned media using a Procep A capture step followed by
ion-exchange chromatography to reduce the DNA burden. Procep A
sorbent material (Bioprocessing Ltd., Durham, England) was used to
prepare a column with a 1:1 diameter to height ratio. Clarified
conditioned media was loaded onto the column at about 150 cm/hr.
The column was washed sequentially with phosphate buffered saline
(PBS), PBS containing 1 M NaCl, and finally with PBS. The bound
material was recovered with 0.1 M acetic acid elution. The eluate
was adjusted to pH 5.5 and was diluted (1:4) with water. The
diluted solution was loaded onto an S-Sepharose column
(2.5.times.13 cm) which was pre-equilibrated with 20 mM sodium
acetate, pH 5.5 at 80 cm/hr. The column was washed with the acetate
buffer until a steady baseline was obtained and the bound protein
was eluted with 20 mM sodium phosphate, pH 7.4 at 25 cm/hr. The
eluted material was filtered with a 0.4 micron membrane and stored
at 4.degree. C.
EXAMPLE 7
Mouse-Human Chimeric Antibody
[0176] 100 ng of BC2 RNA were reverse transcribed with a RT-PCR kit
per the manufacturer's instructions (Boehringer Mannheim Cat. No.
1483-188) using a dT oligo for priming, and PCR amplified with
synthetic ScaI (SEQ ID NO: 100) and NarI (SEQ ID NO: 101) primers
to produce the BC2 light chain variable region with ScaI, NarI ends
(SEQ ID NOs: 102 and 103). This DNA was ligated into ScaI, NarI
digested F9HZHC1-3 (SEQ ID 77) and digested with ScaI, NarI to
produce a mouse-human chimeric light chain F9CHLC (SEQ ID NOs: 104
and 105). 100 ng of BC2 RNA were reverse transcribed with a RT-PCR
kit per the manufacturer's instructions (Boehringer Mannheim Cat.
No. 1483-188) using a dT oligo for priming, and PCR amplified with
synthetic SpeI (SEQ ID NO: 106) and NheI (SEQ ID NO: 107) primers
to produce the BC2 heavy chain variable region with SpeI, NheI ends
(SEQ ID NOs: 108 and 109). The campath signal sequence was PCR
amplified from the RSVHZ19 heavy chain (SEQ ID NO: 25) with EcoRI
(SEQ ID 26) and SpeI (SEQ ID 87) primers. These two DNA fragments
were ligated into a EcoRI, NheI digested IL4CHHCpcd vector
described in published International Patent Application No.
WO95/07301, replacing the IL4 variable region with the BC2 Factor
IX mouse variable region, to produce a mouse-human chimeric heavy
chain F9CHHC (SEQ ID Nos: 110 and 111).
[0177] Co-transfection and purification of the mouse-human chimeric
antibody ch.alpha.FIX was accomplished as described above for the
humanized constructs.
EXAMPLE 8
Efficacy of Humanized Factor IX mAbs in Rat Thrombus Model
[0178] In order to evaluate the efficacy of humanized anti-Factor
IX antibodies in prevention of arterial thrombosis, the rat carotid
artery thrombosis model as described above in Example 3 was used.
Baseline parameters were established for carotid blood flow,
arterial pressure, heart rate, vessel patency and activated partial
thromboplastin time (aPTT). Fifteen minutes thereafter, carotid
injury was effected for 10 minutes. The parameters were determined
60 minutes after onset of carotid injury. Carotid thrombus was also
extracted from the carotid artery and weighed.
[0179] All agents were administered intravenously 15 minutes before
the onset of carotid injury. The following treatments were examined
and compared to the anti-Factor IX mAb BC2.
[0180] 1. Vehicle
[0181] 2. ch.alpha.FIX: 3 mg/kg bolus
[0182] 3. SB 249413: 3 mg/kg bolus
[0183] 4. SB 249415: 3 mg/kg bolus
[0184] 5. SB 249416: 3 mg/kg bolus
[0185] 6. SB 249417: 3 mg/kg bolus
[0186] 7. SB 257731: 3 mg/kg bolus
[0187] 8. Heparin: 60 units/kg bolus+2 units/kg/min infusion
[0188] The aPTT was used as the primary criterion for evaluation of
efficacy versus bleeding liabilities of the
anti-coagulant/thrombotic agents used in the study. The results in
FIG. 8 demonstrate that the humanized Factor IX mAbs SB 249413, SB
249415, SB 249416, SB 249417 and SB 257731 had a modest effect on
aPTT at 3.0 mg/kg which is within the clinical accepted range.
[0189] The effect of the Factor IX mabs on thrombus mass is shown
in FIG. 9. The results indicate that all of the humanized mAbs are
equally effective in reducing thrombus mass.
[0190] The studies conducted in the rat carotid thrombosis model
clearly demonstrate the efficacy of the humanized Factor IX mAbs in
prevention of thrombosis in a highly thrombogenic arterial injury
model. Most notably, the efficacy of all of the humanized Factor IX
mAbs was demonstrated within the desired therapeutic anticoagulant
target defined by the aPTT.
EXAMPLE 9
Antibody Biochemical and Biophysical Properties
[0191] The molecular mass of SB 249417 was determined by MALD-MS to
be 148,000 Da. Analytical ultracentrifugation of SB 249417 gave an
identical value. In the presence of Factor IX plus Ca.sup.2+, the
antibodies derived from BC 2 sedimented with a mass of 248,000 Da
corresponding to the combined mass of the mAb and two molecules of
Factor IX. No evidence of higher ordered aggregates was observed in
the presence or absence of Factor IX.
[0192] The kinetics of Factor IX binding to SB 249417 was assessed
by BIAcore analysis with antibody bound to an immobilized protein A
surface. Recombinant human Factor IX (rhFIX, Genetics Institute) at
49 nM was used and measurements performed in the presence of 5 mM
Ca.sup.2+. The interaction was characterized by rapid association,
kass 2.0.times.10.sup.5 M.sup.-1 s.sup.-1 and relatively slow
off-rate, kdiss=4.1.times.10.sup.-4 s.sup.-1. The calculated
K.sub.d for Factor IX binding was 1.9 nM.
[0193] Table 1 summarizes the biophysical properties of SB
249417.
2TABLE 1 Summary of the Biophysical Properties of SB 249417 Isotype
IgG1, kappa Purity by SDS-PAGE >95% (under reducing conditions)
Molecular Weight Mass Spectrometry 148,000 Da Analytical
Ultracentrifugation 148,000 Da Stoichiometry of Factor IX Binding
Isothermal Titration Calorimetry 1.5 moles Factor IX: 1 mole mAb
Factor IX Binding Affinity Isothermal Titration Calorimetry Kd = 4
nM at 25.degree. C. Biosensor Kd = 2 nM Factor IX Binding Kinetics
Biosensor .sup.kass = 2.0 .times. 10.sup.5 M.sup.-1 s.sup.-1
.sup.kdiss = 4 .times. 10.sup.-4 s.sup.-1
[0194] Table 2 summarizes the factor IX binding properties of mAbs
of the present invention. The calculated dissociation constants
were essentially identical within experimental error.
3TABLE 2 Kinetics of Factor IX Binding to Anti-Factor IX mAbs mAb
k.sub.ass (M.sup.-1s.sup.-1) k.sub.diss (s.sup.-1) calc. K.sub.D
(nM) SB 249417 2.0 .times. 10.sup.5 4.1 .times. 10.sup.-4 1.9 BC2
4.8 .times. 10.sup.5 9.1 .times. 10.sup.-4 1.9 Chf9 2.4 .times.
10.sup.5 3.0 .times. 10.sup.-4 1.3 SB 249413 6.5 .times. 10.sup.5
2.8 .times. 10.sup.-3 3.7-5.1 SB 249415 7.5 .times. 10.sup.5 1.8
.times. 10.sup.-4 1.1-2.3 SB 249416 5.2 .times. 10.sup.5 4.1
.times. 10.sup.-4 0.8 SB 257731 9.2 .times. 10.sup.5 9.9 .times.
10.sup.-4 1.1 SB 257732 1.1 .times. 10.sup.6 1.2 .times. 10.sup.-3
1.5
[0195] The interactions between rhFIX and SB 249417 BC2 and other
humanized constructs were characterized by titration
microcalorimetry, which measures binding interactions in solution
from the intrinsic heat of binding. Nine injections of 106 uM FIX
were made into the calorimeter containing 2 uM mAb SB 249417.
Binding was detected in the first 4 injections as exothermic heats.
At the last 5 injections the mAb binding sites were saturated with
FIX and only background heats of mixing were observed. The results
indicated that the equivalence point occurred at a molar binding
ratio near 2 FIX per mAb, as expected. Nonlinear least squares
analysis of the data yield the binding affinity.
[0196] The rhFIX affinities of the mAbs were measured over a range
of temperature from 34-44.degree. C. in 10 mM HEPES, 10 mM
CaCl.sub.2, 150 mM NaCl, pH 7.4. These data allow the affinity at
37.degree. C. to be determined directly and the affinity at
25.degree. C. to be calculated from the van't Hoff equation. The
data in Table 3 indicate that the affinities of SB 249417, BC2 and
its other humanized constructs are within error (a factor of 2) the
same.
4TABLE 3 Titration Calorimetry Results for Anti-FIX mAbs Molar
Binding Ratio mAb Kd, nM at 25.degree. C. Kd, nM at 37.degree. C.
FIX/mAb BC2 10 20 1.4 SB 249413 6 12 1.9 SB 249415 3 7 1.7 SB
249417 4 12 1.5 SB 257732 4 9 1.8
[0197] The mAbs SB 249413, SB 249415, SB 249417 and SB 257732 all
exhibited very similar thermal stabilities by differential scanning
calorimetry. Their unfolding Tms ranged from 70-75.degree. C.
indicating high stability against thermally induced
denaturation.
EXAMPLE 10
Mechanism of Antibody-Mediated Inhibition of Factor IX
[0198] A library of chimeric constructs composed of sequences of
Factor IX spliced into the framework of the homologous protein
Factor VII was constructed and used to map the epitope for the
Factor IX BC2 mAb. See Cheung et al., Thromb. Res. 80, 419-427
(1995). Binding was measured using a BiaCore 2000 surface plasmon
resonance device. The BC2 antibody was coupled directly to the chip
using the NHS/EDC reaction. Binding was measured by 2 min of
contact time at 20 uL/min with 200 nM of each of the given
constructs in 25 mM MOPS, pH 7.4, 0.15 M NaCl, 5 mM CaCl.sub.2.
Dissociation was monitored for 3 min using the same buffer with no
protein. No binding was detected to the wild type construct in the
presence of 50 mM EDTA. The data are presented in Table 4.
5TABLE 4 Summary of Binding of Factor IX Constructs to BC2 Antibody
Construct Degree of Binding Plasma IXa Binds r-IX Binds Plasma VII
No Binding IX LC/VII HC Binds IX-A/VII Binds VII gla/IX No Binding
VII-A/IX No Binding VII gla (IX 3-11)/IX Binds VII gla (IX 3-6)/IX
Very Low Binding VII gla (IX 9-11)/IX Very Low Binding IX K5A
Binds
[0199] These data indicate that the constructs containing the
Factor IX light chain and Factor VII heavy chain (IX LC/VII HC);
the Factor IX gla and aromatic stack domains (IX-A/VII); residues
3-11 of Factor IX gla domain within the Factor VII gla domain (VII
gla (IX 3-11)/IX); and Factor IX having a lysine to alanine
substitution at residue 5 (IX K5A) exhibit binding to BC2. The VII
gla (IX 3-11)/IX construct exhibited BC2 binding equivalent to wild
type Factor IX (plasma IXa and r-IX). Thus, the BC2 antibody binds
to an epitope contained within residues 3-11 of the Factor IX gla
domain.
[0200] The present invention may be embodied in other specific
forms without departing from the spirit or essential attributes
thereof, and, accordingly, reference should be made to the appended
claims, rather than to the foregoing specification, as indicating
the scope of the invention.
Sequence CWU 0
0
* * * * *