U.S. patent number RE38,723 [Application Number 08/910,090] was granted by the patent office on 2005-04-12 for haloalkyl derivatives of reporter molecules used to analyze metabolic activity in cells.
This patent grant is currently assigned to Molecular Probes, Inc.. Invention is credited to Richard P. Haugland, Fei Mao, John Naleway, Nels Olson, Ram Sabnis.
United States Patent |
RE38,723 |
Mao , et al. |
April 12, 2005 |
Haloalkyl derivatives of reporter molecules used to analyze
metabolic activity in cells
Abstract
The subject invention provides substrates useful for analyzing
the metabolic activity in cells by improving the retention of a
detectable reporter molecule only in intact cells where a
particular enzyme is present. In particular, improved retention
results from a two part process involving conjugation of
haloalkyl-substituted derivatives of a reporter molecule with
intracellular cysteine-containing peptides while unblocking the
reporter molecule. The substrates have the form After the substrate
enters the cells, the analyte removes BLOCK to make REPORTER
detectable by the change in spectral properties, and the haloalkyl
XR reacts with the intracellular thiol to form the thioether
conjugate inside the cells, which is well-retained in the
cells.
Inventors: |
Mao; Fei (Eugene, OR),
Sabnis; Ram (Sacramento, CA), Naleway; John (Eugene,
OR), Olson; Nels (Homer, AK), Haugland; Richard P.
(Eugene, OR) |
Assignee: |
Molecular Probes, Inc. (Eugene,
OR)
|
Family
ID: |
34426735 |
Appl.
No.: |
08/910,090 |
Filed: |
August 12, 1997 |
Related U.S. Patent Documents
|
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
Issue Date |
|
|
026633 |
Mar 5, 1993 |
5362628 |
|
|
|
749256 |
Aug 23, 1991 |
|
|
|
Reissue of: |
336285 |
Nov 8, 1994 |
05576424 |
Nov 19, 1996 |
|
|
Current U.S.
Class: |
536/17.9;
536/18.1; 536/4.1; 549/356; 549/382 |
Current CPC
Class: |
C12Q
1/04 (20130101); C12Q 1/34 (20130101); G01N
33/535 (20130101); C12Q 2334/00 (20130101); C12Q
2334/20 (20130101); C12Q 2334/40 (20130101); C12Q
2337/20 (20130101); G01N 2333/924 (20130101) |
Current International
Class: |
C12Q
1/34 (20060101); C12Q 1/04 (20060101); G01N
33/535 (20060101); C07H 017/00 (); C07D
309/00 () |
Field of
Search: |
;536/11.9,4.1,18.1,17.9
;549/356,382 |
References Cited
[Referenced By]
U.S. Patent Documents
Other References
Poot, et al. Cytometry 12, 1984 (1991).* .
Gossrau, Histochem. J. 17, 737 (1985).* .
Nakai, et al. J. Biol. Chem. 267, 19503 (1992).* .
Mantle, et al. Biochem. Soc. Transactions 18, 175 (1990).* .
Melamed, et al. Flow Cytometry and Sorting (2nd ed. 1990).* .
Rice et al., Cancer Research 46, 6105 (1986).* .
Shapiro, Practical Flow Cytometry (1985).* .
Checa, et al., Analyt. Biochem. 190, 212 (1990).* .
Kanaoka, et al., Chem. Pharm. Bull. 25, 603 (1977).* .
Yoshimoto et al., Biochim. Biophys. Acta, 569, 184 (1979).* .
Pierzchala, Biochem. J., 183, 555 (1979).* .
Nolan, et al., Proc. Natl. Acad. Sci. USA 85, 2603, (1988).* .
Grant & Matsumura, Insect Biochem 18 (6), 615 (1988)..
|
Primary Examiner: Peselev; Elli
Attorney, Agent or Firm: Helfenstein; Allegra Skaugset;
Anton
Government Interests
This invention was made with Government support under grant no. GM
38987 awarded by the National Institutes of Health. The Government
has certain rights in this invention.
Parent Case Text
This application is a continuation-in-part of application Ser. No.
08/026,633 filed Mar. 5, 1993, now U.S. Pat. No. 5,362,628, which
is itself a continuation of application Ser. No. 07/749,256 filed
Aug. 23, 1991, now abandoned.
Claims
What is claimed is:
1. A substrate having the formula:
wherein BLOCK is a monovalent moiety derived by removal of a
hydroxy group from phosphate or from sulfate, or biologically
compatible salt thereof; or a monovalent moiety derived by removal
of a hydroxy group from a carboxy group of an aromatic carboxylic
acid or of an amino acid, protected amino acid, peptide, or
protected peptide; or a monovalent moiety derived by removal of a
hydroxy group from an alcohol or from a mono- or polysaccharide,
where said BLOCK is selected to be removable from -REPORTER by
action of an enzyme; -REPORTER- is an anthracene, a
benzphenalenone, an acridinone .[., a coumarin.]. , a fluorescein,
a naphthalene, a phenalenone, a pyrene, a resorufin, a rhodol, or a
rhodamine, that when no longer bound to BLOCK by a BLOCK-REPORTER
bond, is fluorescent; -SPACER- is a single covalent bond, or a
covalent linkage having 0-8 carbon atoms and 1-4 heteroatoms,
wherein said heteroatoms, which may be the same or different, are
selected from the group consisting of O, N and S; and XR-- is a
haloalkyl moiety, where X is a single Cl, I, or Br, and R is an
alkyl linkage having 1-4 carbons.
2. A substrate, as claimed in claim 1, wherein -SPACER-XR is one of
--(C.dbd.O)--XR, --(SO.sub.2)--XR, XR--C.sub.6 H.sub.4
--(C.dbd.O)--, or XR--C.sub.6 H.sub.4 --(SO.sub.2)--.
3. A substrate, as claimed in claim 1, wherein the BLOCK-REPORTER
bond is an amide bond that results from removal of a hydroxy group
from a carboxylic acid of an amino acid or peptide and a hydrogen
atom from an amino moiety on REPORTER.
4. A substrate, as claimed in claim 1, wherein the BLOCK-REPORTER
bond is an ether bond formed by removal of a hydroxy group from a
lower alcohol having 6 or less carbon atoms or of hydroxy from a
mono- or polysaccharide and a hydrogen atom from a phenolic moiety
on REPORTER.
5. A substrate, as claimed in claim 1, wherein the BLOCK-REPORTER
bond is an ester bond, wherein the ester is an ester of a
guanidinobenzoic, phosphoric, or sulfuric acid, or a biologically
compatible salt thereof.
6. A substrate, as claimed in claim 1, that is an ether of either a
fluorescein or a rhodol and a lower alcohol having 6 or fewer
carbon atoms, or a .[.steriodal.]. .Iadd.steroidal
.Iaddend.alcohol, or of a mono- or polysaccharide, and XR-- is
XCH.sub.2 --.
7. A substrate, as claimed in claim 6, where the monosaccharide is
.beta.-D-galactose, .beta.-D-glucose or .beta.-D-glucuronic acid
and XR-- is ClCH.sub.2 --.
8. A substrate, as claimed in claim .[.1.]. .Iadd.25.Iaddend., that
is an ether of a 7-hydroxycoumarin and a mono- or polysaccharide,
or a lower alcohol having .[.6 or fewer.]. .Iadd.2-6
.Iaddend.carbon atoms, or a steroidal alcohol, and XR- is XCH.sub.2
--.
9. A substrate, as claimed in claim 8, where the monosaccharide is
.beta.-D-galactose, .beta.-D-glucose or .beta.-D-glucuronic acid
and XR-- is ClCH.sub.2 --.
10. A substrate, as claimed in claim 1, that is an ether of a
fluorescein and a mono- or polysaccharide, or a lower alcohol
having 6 or fewer carbon atoms, and XR-- is XCH.sub.2 --.
11. A substrate, as claimed in claim 10, where the monosaccharide
is .beta.-D-galactose, .beta.-D-glucose or .beta.-D-glucuronic acid
and XR-- is CHCl.sub.2 --.
12. A substrate, as claimed in claim 1, that is an amide of a
7-aminocoumarin and an amino acid or peptide or a biologically
compatible salt of an amino acid or peptide and XR-- is XCH.sub.2
--.
13. A substrate, as claimed in claim 1, that is an amide of
rhodamine 110 and an amino acid, protected amino acid, or peptide,
or a biologically compatible salt of an amino acid or peptide, and
XR-- is XCH.sub.2 --.
14. A substrate, as claimed in claim 1, that is an amide of
rhodamine 110 and an amino acid, protected ammo acid or peptide or
biologically compatible salt of an amino acid, protected amino acid
or peptide, and -SPACER- is a carboxamide or sulfonamide bound to
the second rhodamine nitrogen.
15. A substrate, as claimed in claim 1, having the formula
##STR28##
16. A substrate, as claimed in claim 1, having the formula
##STR29##
17. A substrate, as claimed in claim 16, wherein XR-SPACER- is one
of XR--(C.dbd.O)--, XR--(SO.sub.2)--, XR--C.sub.6 H.sub.4
--(C.dbd.O), or XR--C.sub.6 H.sub.4 --(SO.sub.2)--.
18. A substrate, as claimed in claim 1, having the formula
##STR30##
19. A substrate, as claimed in claim 1, having the formula
##STR31##
20. A substrate, as claimed in claim .[.1.]. .Iadd.25.Iaddend.,
having the formula ##STR32##
21. A substrate, as claimed in claim .[.1.]. .Iadd.25.Iaddend.,
having the formula ##STR33##
22. A fluorescent enzymatic reaction .[.producing.]. .Iadd.product
having .Iaddend.the formula ##STR34## where REPORTER is an
anthracene.Iadd., .Iaddend.a benzphenalenone, an acridinone, a
coumarin, a fluorescein, a naphthalene, phenalenone, a pyrene, a
resorufin.Iadd., .Iaddend.a rhodol, or a rhodamine; -SPACER- is a
single covalent bond, or a covalent linkage having 0-8 carbon atoms
and 1-4 heteroatoms, wherein said heteroatoms, which may be the
same or different, are selected from the group consisting of O, N
and S; and R is an alkyl linker having 1-4 carbon atoms; wherein,
in the presence of reduced glutathione, said enzymatic reaction
product is the result of the action of an analyte enzyme on the
substrate
23. A fluorescent enzymatic reaction product, as claimed in claim
22, wherein said analyte enzyme is present intracellularly.
24. A fluorescent enzymatic reaction product, as claimed in claim
22, where REPORTER is a coumarin, a fluorescein, a resorufin, a
rhodol, or a rhodamine..Iadd.
25. A substrate having the formula:
wherein BLOCK is a monovalent moiety derived by removal of a
hydroxy group from phosphate or from sulfate, or a biologically
compatible salt thereof; or a monovalent moiety derived by removal
of a hydroxy group from a carboxy group of an aromatic carboxylic
acid or of an amino acid, protected amino acid, peptide, or
protected peptide; or a monovalent moiety derived by removal of a
hydroxy group from an alcohol having 2-6 carbons, or from a
steroidal alcohol, or from a mono-or polysaccharide, where said
BLOCK is selected to be removable from-REPORTER by action of an
enzyme; -REPORTER-is a coumarin, that when no longer bound to BLOCK
by a BLOCK-REPORTER bond, is fluorescent; -SPACER-is a single
covalent bond, or a covalent linkage having 0-8 carbon atoms and
1-4 heteroatoms, wherein said heteroatoms, which may be the same or
different, are selected from the group consisting of O, N and S;
and XR-- is a haloalkyl moiety, where X is a single Cl, I, or Br,
and R is an alkyl linkage having 1-4 carbons. .Iaddend.
Description
FIELD OF THE INVENTION
The subject invention provides fluorogenic substrates for analyzing
the metabolic activity in cells by improving the retention of a
detectable reporter molecule only in intact cells where a
particular enzyme is present. In particular, improved retention
results from conjugation of haloalkyl-substituted derivatives of a
reporter molecule with intracellular cysteine-containing peptides,
while a detectable signal is provided by unblocking the reporter
molecule.
BACKGROUND TO THE INVENTION
The presence and activity of enzymes can be used to determine the
health and metabolic state of a cell. Enzymes are also markers for
the cell type since the occurrence and activity of certain enzymes
is frequently characteristic of a particular cell. For instance,
the activity of certain enzymes can often be used to distinguish
cells of bacterial, plant or animal origin. Enzymatic activity and
integrity of the cell membrane is one of the criteria for cell
viability.
Detection of the presence and activity of enzymes has been
facilitated by the development of chromogenic or fluorogenic
substrates that are converted by chemical action of the enzyme to a
reporter molecule whose optical properties can be measured.
Principal among the new reporter molecules have been fluorescent
dyes. In many cases the high sensitivity of fluorescence detection
permits measurements in living single cells with high spatial and
temporal resolution that are not possible with dyes that are not
fluorescent.
Unfortunately, many reporter dyes formed by action of intracellular
enzymes on synthetic enzyme substrates rapidly leak from the cells,
making qualitative and quantitative assays of cellular enzymatic
activity difficult. Accurate measurement of enzymatic presence or
activity in a single cell requires that the detectable reporter
molecule is retained by the cell for the period required for its
measurement. Furthermore, it is strongly preferred that the
measurement can be made under physiological conditions and, if
desired, in living tissue or cells.
An example where these properties are especially required is the
use of foreign genes that code for enzymes as markers in cells. For
instance, bacterial genes that code for production of
.beta.-galactosidase (lacZ) or .beta.-glucuronidase (GUS) have been
incorporated .[.(transletted).]. .Iadd.(transfected).Iaddend.into
plant and animal cells that do not ordinarily contain this
activity. To determine the success of the incorporation, to sort
and clone the .[.transletted.]. .Iadd.transfected .Iaddend.cells,
and to measure the effect of certain promoter genes that are
simultaneously incorporated with the marker gene requires both that
the reporter molecule formed by action of the enzyme on the
substrate is retained in the single cell, and that its retention
measures the level of enzymatic activity in the cell. The analysis
and sorting of successfully cloned cells can be performed by flow
cytometry if suitable probes are available that are retained inside
the cell sufficiently long for the analysis to be completed.
A number of synthetic enzyme substrates have been used to determine
the activity of enzymes in extracts of cells, in solution, or in
living cells. Most of these substrates have been based on
fluorescent reporter dyes such as 7-hydroxy-4-methylcoumarin
(.beta.-methylumbelliferone), 7-amino-4-methylcoumarin,
4-methoxy-2-naphthylamine, fluorescein, resorufin, rhodamine 110 or
various derivatives of .alpha.- and .beta.-naphthol. Quantitative
detection of enzymatic activity in single, living cells under
physiological conditions, whether intrinsic to the cell or
incorporated by genetic manipulation, has been difficult because
the reporter molecules formed by the enzymatic reaction of
substrates based on the above fluorophores have been poorly
retained in cells.
Certain substrates have been described for the histochemical
localization of protease enzymes in cultured cells, that require
addition of a second reagent to develop a weakly .[.fluorescenct.].
.Iadd.fluorescent .Iaddend.product subsequent to the enzymatic
reaction by Gossrau, Cytochemistry of Membrane Protease, HISTOCHEM.
J. 17, 737 (1985). The requirement of a second reagent complicates
the quantitative aspects of the measurements and makes the Gossrau
procedure less desirable for use in applications that are highly
automated.
Use .[.offluorescein.]. .Iadd.of fluorescein .Iaddend.digalactoside
(FDG) in an automated procedure to sort single lacZ-positive
transfected cells has been described by Nolan et al., MONITORING OF
CELLS AND TRANS-ACTING TRANSCRIPTION ELEMENTS, U.S. Pat. No.
5,070,012 (1991). Cells were loaded with this relatively impermeant
substrate by hypoosmotic shock, then the cells were cooled to below
5.degree. C. Although this permitted sorting of the cells at a
super-cooled temperature where the competition between the enzyme
turnover rate and the leakage rate permitted retention of a portion
of the fluorescent dye, it is not effective under physiological
conditions. The leakage rate of potential alternative probes for
monitoring lacZ or GUS gene fusion such as the resorufin formed by
hydrolysis of resorufin galactoside and .beta.-methylumbelliferone
formed by hydrolysis of .beta.-methylumbelliferyl glucuronide tends
to be even faster.
Lipophilic derivatives of fluorescein and resorufin have been
described in LIPOPHILIC FLUORESCENT GLYCOSIDASE SUBSTRATES (U.S.
Pat. No. 5,208,148 to Haugland et al. (1993)) and LONG WAVELENGTH
LIPOPHILIC FLUOROGENIC GLYCOSIDASE SUBSTRATES (U.S. Pat. No.
5,242,805 to Naleway et al. (1993)), where retention is enhanced by
the addition of a lipophilic residue and can be used under
physiological conditions. These substrates can be used with
automated procedures but are not effective where the fluorescent
label needs to be retained inside cells to which a fixative has
been applied.
There is a need for a method for analyzing metabolic activity in
cells under physiological conditions, using a substrate that yields
fluorescence or absorbance detectable products that are retained in
the cells for the time period required to accomplish relevant
analysis. The fluorescence or absorbance should be detectable
inside fixed cells as well as living cells and be distinct from
background fluorescence or absorbance.
Glutathione transferase is known to catalyze the reaction of a wide
variety of alkylating and arylating reagents with glutathione
(Mantle, et al., Glutathione S-transferases, BIOCHEM. SOC.
TRANSACTIONS, 18, 175 (1990)). This is an important process for
detoxification of pollutants and dangerous chemicals by cells. The
enzyme is ubiquitous, being found in both plant and animal cells.
Free glutathione levels in most normal cells are relatively high
(up to >1 mM).
A number of haloalkylated fluorescent reagents have been previously
described for use in estimating the level of intracellular thiols
in cells. Monochlorobimane is a chloroalkylated fluorescent reagent
that has been used to measure glutathione levels in single cells by
flow cytometry in a reaction that is catalyzed by glutathione
transferase (Rice, et al., Quantitative Analysis of Cellular
Glutathione by Flow Cytometry Utilizing Monochlorobimane: Some
Applications to Radiation and Drug Resistance in Vitro and in Vivo,
CANCER RESEARCH 46, 6105 (1986)). Monobromobimane is a reagent with
similar utilizing however it is less selective for intracellular
thiols than is monochlorobimane (Fernandez-Checa, et al., The Use
of Monochlorobimane to Determine Hepatic GSH Levels and Synthesis,
ANALYT. BIOCHEM. 190, 212 (1990)). The use of
chloromethylfluorescein diacetate (CMFDA) and chloromethyleosin
diacetate (CMEDA) has previously been described for measuring the
content of thiols in living cells during the cell cycle by flow
cytometry, by Poot, et al., Flow Cytometric Analysis of Cell
Cycle-Dependent Changes in Cell Thiol Level by Combining a New
Laser Dye With Hoechst 33342, CYTOMETRY 12, 184 (1991). Although
the two probes described by Poot, et al. may prove useful for this
invention, the specific haloalkylated reagents of Poot et al. were
not utilized to detect or quantitate the presence or activity of a
second enzyme, other than glutathione transferase, in live or fixed
cells or to determine the viability of the cell.
Mangel et al. has described a family of fluorogenic protease
substrates having amino acids or peptides bound to the amino
nitrogens of a rhodamine fluorophore (U.S. Pat. Nos. 4,557,862
(1985) and 4,649,893 (1987)). Upon cleavage of the amino acids by
proteases, the rhodamine becomes fluorescent. However, the Mangel
et al. compounds do not possess a haloalkyl moiety to aid in
retaining the fluorescent product within cells, and typically leak
from cells fairly quickly after enzyme cleavage. The Mangel et al.
compounds are also generally difficult to load into cells. This is
primarily due to the size of the substrates, but can also be due to
the presence of highly polar amino acid residues used as blocking
groups. Also, the need for the enzyme to cleave two blocking groups
from the substrate complicates the kinetics of the enzyme reaction
considerably, as cleavage of the second fluorophore-amino acid bond
is much slower than cleavage of the first. Finally, the preparation
of the Mangel et al. substrates requires two equivalents of the
relatively expensive target peptides for each fluorophore so
labeled.
The presence of the haloalkyl group is critical for retention of
the reporter molecule in cells. In a direct comparison of a
reporter molecule and its chloromethyl-substituted analog, it was
found that the chloromethyl-substituted reporter was retained in
cells for several hours, while the conventional reporter leaked
away quickly (Examples 15 and 16). Similarly, the nature of the
haloalkyl group itself is critical. While haloalkyl-substituted
hydrolase substrates based on coumarin fluorophores have been
described by Scheper et al., (U.S. Pat. No. 4,777,269 (1988)),
Scheper et al.'s preferred haloalkyl substituent, trifluoromethyl,
does not aid in retaining the reporter molecular within cells. A
comparison of cellular retention based on haloalkyl group was
performed (Example 16), and verified that the
chloromethyl-substituted reporter was well-retained in cells, while
the methyl- and trifluoromethyl-substituted reporters show very
poor retention.
DESCRIPTION OF THE DRAWINGS
FIG. 1. Diagram of two alternate pathways to formation of a
detectable thioether conjugate. E.sub.1 is the reaction between the
intracellular thiol, which, in the case of glutathione, is
catalyzed by glutathione transferase. E.sub.2 is the removal of
BLOCK resulting from the action of the analyte enzyme.
SUMMARY OF THE INVENTION AND DESCRIPTION OF PREFERRED
EMBODIMENTS
This invention utilizes novel probes that simultaneously form
conjugates with cysteine residues in peptides and act as substrates
for an intracellular enzyme whose activity is to be detected. The
probes allow the analysis of metabolic activity of living cells
under a variety of conditions.
The novel method for analyzing the metabolic activity of cells
begins with the preparation of a biocompatible solution containing
a substrate. A biocompatible solution is any solution that
facilitates the contact between the substrate and the cells being
analyzed without destroying the integrity of the cell membrane or
the viability of the cell. The biocompatible solution may include
buffering agents, a culture medium for the cells, solvents or
detergents that, without materially harming the cells, assist in
solubilizing the substrate or permeabilizing cell membranes, or
combinations thereof. The substrates have the general form:
BLOCK is any group that can be removed by specific hydrolytic or
oxidative action of the analyte on the bond between BLOCK and
REPORTER. The action of the analyte removing BLOCK produces a
detectable product with emission or excitation properties different
from those of the substrate, i.e. as a result of action by the
analyte on the substrate, REPORTER exhibits a detectable change in
absorbance or, preferably, fluorescence. Usually action of the
analyte removing BLOCK results in a shift in the absorbance of the
resultant product to longer wavelengths that are not absorbed or
are minimally absorbed before the removal of BLOCK. BLOCK is
selected to be removable only by action of a specific analyte, i.e.
an enzyme or chemical substance predetermined to be of analytical
interest. BLOCK is only removed when the specific analyte is
present.
BLOCK is typically a monovalent moiety derived by removal of a
hydroxy group from a phosphate, a sulfate, or a biologically
compatible salt thereof. Alternatively BLOCK is a monovalent moiety
derived by removal of a hydroxy group from a carboxy group of an
aliphatic acid (e.g. acetic or octanoic acid), an aromatic acid
(e.g. p-guanidinobenzoic acid), an amino acid, a protected amino
acid, or a peptide. BLOCK may also be a monovalent moiety derived
by removal of a hydroxy group from an alcohol, a mono-, or a
polysaccharide (e.g. galactose, glucose, glucuronic acid,
cellobiose). Representative hydrolytic enzymes (analytes) and their
target groups are given in Table 1. Any of the target groups in
Table 1, as well as target groups for other hydrolytic or oxidative
enzymes, can be used to derive, by means known in the art, a
removable BLOCK to combine with a selected REPORTER molecule.
Although the majority of enzyme substrates that have been described
are substrates for hydrolytic enzymes wherein BLOCK is an ester or
an amide, fluorogenic substrates for enzymes such as the microsomal
dealkylases, including cytochrome P450 that function by an
oxidative mechanism are also known. In these cases BLOCK is usually
an aliphatic ether. Primary examples include 7-ethoxycoumarin,
ethers of resorufin (Nakai, et al., J. BIOL. CHEM. 267, 19503
(1992)) and steroidal ethers U.S. Pat. No. 5,110,725 to Martone et
al. (1992)). Because the microsomal dealkylase enzymes typically
have low turnover rates in cells, it is difficult to detect the
fluorescent product in single cells unless a substrate such as that
described in Example 8 is used.
The REPORTER portion of the substrate is a molecule for which the
emission or excitation properties change depending on the presence
or absence of BLOCK. Preferably, REPORTER is a dye that, except for
being bound to BLOCK by a REPORTER-BLOCK bond, is detectable by
fluorescence. Commonly REPORTER is a phenol or an aromatic amine
and the bond linking REPORTER and BLOCK is an ester of a
carboxylic, phosphoric, or sulfuric acid, or a biologically
compatible salt thereof, an ether, a thioether, or an amide.
Typically the carboxylate ester is an ester of an aliphatic
carboxylic acid having 1 to 18 carbon atoms or of an aromatic
carboxylic acid having 7 to 24 carbon atoms. The amide bond is
commonly formed by the removal of the elements of hydroxy from the
carboxylic acid of an amino acid or peptide and a hydrogen atom
from an amino moiety on REPORTER. The ether or thioether bond is
formed by removal of the elements of hydroxy from an alcohol,
preferably a steroidal alcohol having 30 or less
A biologically compatible salt is not toxic as used, and does not
have a substantially deleterious effect on biomolecules. Examples
of biologically compatible anionic salts include, among others,
chloride, bromide, iodide, sulfate, alkanesulfonate, arylsulfonate,
phosphate, perchlorate, tetrafluoroborate, tetraphenylboride,
nitrate and anions of aromatic or aliphatic carboxylic acids.
Examples of biologically compatible cationic salts include, among
others, sodium, potassium, ammonium, and alkylammonium. Preferred
salts are chloride, iodide, perchlorate, various sulfonates, sodium
and potassium.
TABLE 1 REPRESENTATIVE ENZYMES E.C. NO. ENZYME TARGET GROUP
3.2.1.20 .alpha.-Glucosidase .alpha.-D-Glucose 3.2.1.21
.beta.-Glucosidase .beta.-D-Glucose 3.2.1.22 .alpha.-Galactosidase
.alpha.-D-Galactose 3.2.1.23 .beta.-Galactosidase
.beta.-D-Galactose 3.2.1.24 .alpha.-Mannosidase .alpha.-D-Mannose
3.2.1.25 .beta.-Mannosidase .beta.-D-Mannose 3.2.1.30
N-Acetyl-.beta.-D-Glucos- .beta.-D-N-Acetyl-Glucosamine amidase
3.2.1.31 .beta.-Glucuronidase .beta.-D-Glucoronic Acid 3.2.1.38
.beta.-D-Fucosidase .beta.-D-Fucose 3.2.1.51 .alpha.-L-Fucosidase
.alpha.-L-Fucose 3.2.1-- .beta.-L-Furosidase .beta.-L-Fucose
3.2.1.76 L-Iduronidase .alpha.-L-Iduronic Acid 3.2.1.4 Cellulase
.beta.-D-Cellobiose 3.2.1-- .alpha.-Arabinopyranosidase
.alpha.-L-Arabinopyranose 3.2.1.37 .beta.-Xylosidase
.beta.-D-Xylose 3.2.1.18 .alpha.-N-Acetyl-
.alpha.-D-N-Acetyl-neuraminic acid neuraminidase (Sialic acid)
3.1.1-- guanidinobenzoatase aryl esters of p-guanidinobenzoate
3.1.3.1 alkaline phosphatase aryl or alkyl phosphate monoesters
3.1.3.2 acid phosphatase aryl or alkyl phosphate monoesters 3.1.6.1
aryl sulfatase aryl sulfate monoesters 3.3.3.41
4-nitrophenylphosphatase aryl phosphates 3.4.11.l leucine amino
peptidase leucine residues at .alpha.-carboxyl
carbon atoms, or a lower alcohol having 6 or less carbon atoms, and
a hydrogen atom from a phenolic or thiophenolic moiety on REPORTER.
Alternatively the ether or thioether bond is formed by removal of
hydroxy from a mono- or polysaccharide and a hydrogen atom from a
phenolic or thiophenolic moiety on REPORTER.
Many dyes suitable for use in the novel substrates have been
described previously. Among the most common are derivatives of
coumarin such as 7-hydroxy-4-methylcoumarin
(.beta.-methylumbelliferone) or 7-amino-4-methylcoumarin,
2-amino-4-methoxynaphthalene, 1-hydroxypyrene, fluorescein and
resorufin. Also suitable for some applications are phenalenones or
benzphenalenones U.S. Pat. No. 4,812,409), acridinones (U.S. Pat.
No. 4,810,636), anthracenes, rhodamines, rhodols, or various
derivatives of .alpha.- and .beta.-naphthol. Table 2 describes some
representative dyes which can be used to make the subject
substrates.
TABLE 2 REPRESENTATIVE REPORTER MOLECULES Reporter Molecules Sample
Substrate 6-aminobenzphenalenones ##STR1## 7-aminocoumarin ##STR2##
6-aminophenalenone ##STR3## anthracene ##STR4## fluorescein
##STR5## 6-hydroxybenzphenalenones ##STR6## 7-hydroxycoumarin
##STR7## 6-hydroxyphenalenone ##STR8## 4-methoxy-2-naphthyl amine
##STR9## resorufin ##STR10## rhodamine, type I ##STR11## rhodamine,
type II ##STR12## rhodamine, type III ##STR13## rhodol, type I
##STR14## rhodol, type II ##STR15## rhodol, type III ##STR16##
acridinone ##STR17##
A third component of the subject substrate is a haloalkyl moiety
XR-, where X is a halogen and R is an alkyl linkage having 1-4
carbon atoms. Preferably the halogen is Cl or Br, and R is
methylene; more preferably XR- is ClCH.sub.2 --. It is recognized
that many substituents such as haloaryl, epoxides, sulfonate esters
and similar functional groups that contain a group that is readily
replaced in a reaction with thiols such as glutathione, that may or
may not be catalyzed by glutathione transferase, are equivalent to
XR- for some applications.
Typically XR- is attached to the aromatic system of the REPORTER
moiety directly. In these embodiments of the invention, SPACER is
preferably a single covalent bond. In another embodiment of the
invention, the reactive sites XR- and BLOCK are separated from each
other in their attachment to REPORTER. To provide this separation
XR- is attached to REPORTER by a SPACER moiety, to yield a compound
of the formula XR-SPACER-REPORTER-BLOCK. In this embodiment, XR- is
typically attached to REPORTER via conjugation to a heteroatom
present on REPORTER, such as a fluorescein oxygen or rhodamine
nitrogen, and SPACER is a covalent linkage having 0-8 carbon atoms
and 1-4 heteroatoms, where the heteroatoms are O, N or S in any
combination. Preferably, SPACER is carbonyl (--(C.dbd.O)--),
sulfonyl (--SO.sub.2 --), benzoyl (--C.sub.6 H.sub.4
--(C.dbd.O)--), where the carbonyl is attached to the phenyl ring
at the ortho, metal, or para position with respect to XR-, or
benzenesulfonyl (--C.sub.6 H.sub.5 --SO.sub.2 --), where the
sulfonyl is attached to the phenyl ring at the ortho, meta, or para
position with respect to XR-.
Where REPORTER is a rhodol fluorophore, BLOCK is optionally a mono-
or polysaccharide, phosphate, sulfate, ester or ether attached to
the rhodol oxygen, or an amino acid or peptide attached to the
rhodol nitrogen, and XR-SPACER is optionally attached to the
remaining nitrogen or oxygen, respectively (as illustrated above;
rhodols type I, II and III). Where REPORTER is a rhodamine
fluorophore, both BLOCK and XR-SPACER are optionally attached to
rhodamine nitrogens (as illustrated above: rhodamines type I and
II). Where REPORTER is either a rhodol or rhodamine fluorophore,
XR- is optionally attached directly to the aromatic ring at the 5-
or 6-position of the fluorophore, and the fluorophore is further
substituted by two BLOCK groups (as illustrated above; rhodamine
type III).
Rhodamine-based substrates having only a single amino acid or
peptide are smaller or less polar than bis-substituted rhodamines,
and can subsequently enter cells with greater facility.
Additionally, the removal of only a single BLOCK results in a
fluorescent product, simplifying the kinetics of enzyme activity.
Finally, less of the typically expensive amino acid BLOCK is used
per fluorophore.
Rhodol-based substrates having an XR-SPACER on either the terminal
O or N atom and an enzyme-removable BLOCK on the remaining terminal
O or N are also smaller and less polar than substrates based on
fluorescein or rhodamine 110. Furthermore, only a single enzymatic
reaction is required to generate a fluorescent product from the
substrates.
Once inside the cell, the haloalkyl moiety (XR-) will covalently
react with an intracellular thiol (Z-S-H) to form a thioether
conjugate (Z-S-R). The term intracellular thiol includes
glutathione and other polar or higher molecular weight thiols
present in cells such as cysteine and cysteine-containing peptides
and proteins. Reaction of the subject substrates with thiols other
than gluthione appears to be more common with the more reactive
alkylating groups (XR) such as bromomethyl and iodomethyl. Where
the thiol is glutathione, formation of the thioether conjugate is
likely to be catalyzed by the enzyme glutathione transferase, but
glutathione transferase is not essential for utilization of these
substrates, provided that the uncatalyzed reaction with
intracellular thiols is sufficiently rapid to yield retention of at
least some of the fluorescent product inside cells. However, a
reaction of the chloroalkylated substrates with glutathione that is
catalyzed by glutathione transferase is preferred since nonspecific
reaction of protein thiols with alkylating agents is more likely to
result in cytotoxicity.
After a biocompatible solution of substrate has been prepared, the
substrate in solution is placed in contact with the cells being
analyzed. The cells being analyzed may be from any plant or animal
origin that is suspected of containing the analyte, including
single cell organisms such as bacteria and yeast. The cells may be
present in an intact organism or in a medium that has been
separated from the organism, such as biological fluids or cultures
of essentially pure cell lines. The analyte may have been
introduced into the cell by processes of genetic engineering
familiar to one skilled in the art. The analyte, if present, may be
localized in one or more intracellular areas or organelles, which
may include the inner membrane of the cell, the cytosol,
microsomes, mitochondria, liposomes, or the nucleus.
The substrate is brought into contact with the analyte enzyme under
conditions where the substrate can readily enter intracellular
areas which may contain the analyte of interest. The substrate
enters intracellular areas by any technique that is suitable for
transporting the substrate into the intracellular areas with
minimal disruption of the viability of the cell and integrity of
cell membranes. Examples of suitable processes include passive
diffusion through the membrane; action of chemical agents such as
detergents, enzymes or adenosine triphosphate; receptor- or
transport protein-mediated uptake; pore-forming proteins;
microinjection; electroporation; hypoosmotic shock (Example 12); or
minimal physical disruption such as scrape loading or bombardment
with solid particles coated with or in the presence of the
substrate. Depending on the technique used to introduce the
substrate into the cells and the REPORTER portion of the substrate,
it may take a few seconds to several hours for enough substrate to
enter the cells to give a detectable result.
After the substrate enters the cell, sufficient time is allowed for
the specific action of the analyte to remove BLOCK, and for the
haloalkyl XR to react with a thiol. The formation of the detectable
conjugate REPORTER-SPACER-R-S-Z can occur by either of two routes
(FIG. 1). In Route 1 a probe whose detectable optical property is
blocked, reacts with an intracellular thiol to form a blocked
intermediate that is not yet detectable, at least at the optimal
wavelength for detection. If the analyte is present and active,
BLOCK is removed by action of the analyte. This action results in
formation of the detectable reporter molecule which, because of its
conjugation to the thiol and resultant charge, is well retained
intracellularly. In Route 2 action of the analyte removes BLOCK
from the substrate first, resulting in formation of a detectable
haloalkylated reporter molecule. In a subsequent step, the
detectable molecule is conjugated to an intracellular thiol
resulting in formation of the identical reporter molecule conjugate
as formed in Route 1. Conjugation of the haloalkyl moiety to
glutathione or low molecular weight peptide converts the REPORTER
molecule into a small peptide, REPORTER-SPACER-R-S-Z, that has the
charge and approximate permeability properties of an amino acid,
while having the detectability of the REPORTER molecule. Since
amino acids and most peptides are generally not freely permeant to
intact cell membranes, it is important for retention of the
reaction product that this conjugation occurs intracellularly.
In most cases, the intracellularly thiol is glutathione, and the
conjugation is catalyzed by the enzyme glutathione transferase.
Example 14 presents evidence that the metabolic products are
substrates for glutathione transferase and presents methods for
determined the activity of glutathione transferase in vitro. The
relative importance of the two routes to the same product depends
on the concentrations and activities of the enzymes and substrates,
the access of the substrates to the enzymes, the concentration of
intracellular thiols, particularly glutathione, the reactivity of
the haloalkyl moiety, and other factors. Significantly, in both
cases formation of the detectable reporter molecule occurs only
following action of the analyte. Thus, even though conjugation of
the substrate to an intracellular thiol improves retention of
BLOCK-REPORTER in the cell, it does not result in formation of a
detectable reporter molecule unless the enzyme needed to remove the
BLOCK is present and active. When the analyte is present, the
fluorescent product is typically visible within a few minutes.
Optimal accumulation of the thioether conjugate may be obtained
within 15 minutes to 1 hour, however detectability remains for
hours to days.
Once sufficient time for the unblocking and conjugation has
elapsed, the cells are prepared for measuring fluorescence or
absorbance. The preparation required will depend on the method to
be used to make such measurements. The preparation typically
involves the transfer of cells from the biocompatible solution
containing the substrate to a fresh biocompatible solution without
substrate, usually a standard culture medium, and washing the cells
to remove extracellular products. Then the cells may be placed in
or on the appropriate container for making the measurements, such
as cuvettes, culture dishes, slides, etc. Unlike the use of most
fluorescent substrates, the method using the subject substrates may
also include fixing the cells using an aldehyde fixative. Where the
REPORTER-thiol adduct possesses an aliphatic amine group, as in the
case of a glutathione adduct, this group makes the detectable
adduct capable of fixation by common aldehyde fixatives such as
formaldehyde and glutaraldehyde without complete dispersion of the
fluorescence (Example 11). Thus it is possible to determine the
presence of the analyte in cells after a variable or fixed period
following the killing and fixation of the cells. This reduces the
hazard of working with pathogenic cells. This property is also
useful for detecting the effect of cytotoxic agents or
conditions.
The final step of the subject method for analyzing the metabolic
activity of cells in making qualitative or quantitative
measurements of absorbance or fluorescence of REPORTER. The
REPORTER is typically present as part of the thioether conjugate
retained inside the cell. REPORTER may be blocked or unblocked,
depending on whether the analyte was present in the cells. The
measurements can be made by observation of the absorbance or
fluorescence through visual inspection or by using a suitable
instrument such as an absorption spectrometer, fluorometer, flow
cytometer or microscope. Analysis may be of the whole organism, a
tissue, a cell suspension, adherent cells or single cells. Analysis
can be of the REPORTER conjugate located in intact living cells
(Examples 11-13), in cells that have been fixed with an aldehyde
fixative in a manner so as to retain the REPORTER in the fixed cell
(Example 11) or can be of the supernate that results from lysis of
the cell by a lysing agent. In the latter case, detection in the
supernate may be correlated with both metabolism of the
BLOCK-REPORTER and the activity of the lysing agent (Example 15).
In the case of single cells, whether live or fixed, the analysis
may be by imaging or flow cytometry, where the fluorescene of
REPORTER in the cell may be used to discriminate or isolate the
cell based on the presence or level of activity of an analyte,
using techniques well known in the art, as described by Melamed, et
al., FLOW CYTOMETRY AND SORTING (2nd ed. 1990); Shapiro, PRACTICAL
FLOW CYTOMETRY (1985).
The fluorescent thioether conjugate formed by metabolic removal of
BLOCK and conjugation of REPORTER to glutathione is retained inside
living cells for sufficiently long to quantitatively or
qualitatively measure the fluorescence or absorbance of the
attached REPORTER. When the integrity of the membranes is
disrupted, however, the reaction products may easily leak from the
cell unless a fixing agent is present (Example 11). The change in
fluorescence intensity that results from loss of the detectable
product in therefore a useful means of detecting cell death,
especially when caused by cytotoxic agents. Metabolism of the
substrate to a polar tracer by cells that are positive for the
enzymes that remove BLOCK is the basis of a test for cytotoxicity
of extrinsic reagents (Example 15) or extrinsic conditions such as
heat. For instance, glucosidase is an enzyme that is commonly found
in many cells, making the subject glucosidase substrates also
useful for this application. In other cases it may be preferred to
label cells that have an enzymatic activity that is not present in
all cells so that selective determination of cytotoxicity in a
mixed cell population can be detected. In this case substrates such
as the galactosides, glucuronides and phosphates are preferred
since these enzymes are not as widely distributed, particularly in
mammalian cells.
EXAMPLES
The examples illustrate that the subject substrates
XR-SPACER-REPORTER-BLOCK may be derived from a variety of
fluorophores (Examples 1-10) with a range of spectral properties
from the near ultraviolet to about 650 nm and that the BLOCK group
may be any of several groups that can be removed by action of a
specific analyte (Examples 1-10). Methods for synthesis of the
REPORTER-BLOCK conjugates are similar or identical to those of the
structurally similar molecules that do not contain the chloroalkyl
groups. For instance 7-hydroxy-4-chloromethylcoumarin (Example 2)
and 7-hydroxy-4-methylcoumarin (.beta.-methylumbelliferone) have
similar structures and reactivity and numerous glycosidase
phosphatase, sulfatase, ether, ester, guanidinobenzoatase have been
derived from the latter compound. Fluorescein and
5-chloromethylfluorescein (Example 1) have similar reactivity, so
that synthetic methods for one REPORTER molecule and its
chloroalkylated derivative proceed similarly. The examples
illustrate materials that can be used to perform the process that
is the subject of the invention and not to limit or exclude
reagents that can be prepared by one reasonably skilled in the art
that are essentially equivalent. Furthermore, haloalkylated
REPORTERS are typically synthesized using the same or similar
chemistry as is used to prepare non-haloalkylated REPORTERS by the
substitution of a haloalkyl moiety on one of the reactants
(Examples 2 and 6). Alternatively, haloalkylated REPORTERS can be
prepared by the conversion of other residues present on REPORTER,
such as carboxylic acids, to haloalkyl by methods well known in the
art (Example 1).
The examples also indicate that the subject substrates are
advantageous for measurement of the enzymatic activity in single
cells in that they are permeable to the intracellular organelle
containing the enzyme (Examples 11-13 and 15), they are converted
to a detectable reporter molecule by specific action of the enzyme
(Examples 11-13 and 15), the reporter molecule is retained under
physiological conditions for the period required for its detection
(Example 11-13 and 15), a direct relationship between the enzymatic
activity and the amount of dye retained in the cell can be
established (Example 13), and the reporter molecule and the
substrate are substantially non-toxic to the cells (Example 11-13).
In addition, while not essential for utility, the reporter molecule
is still detectable flowing fixation of the cell (Example 11).
Example 1
PREPARATION OF A .beta.-GALACTOSIDASE SUBSTRATE HAVING A
CHLOROMETHYL GROUP AT THE 5-POSITION AND GALACTOSIDES ON THE 3'-
AND 6'-HYDROXYL POSITIONS OF FLUORESCEIN
The following compound is prepared: ##STR18##
Preparation of 5-acetoxymethylfluorescein diacetate:
A solution of 5-carboxyfluorescein diacetate (Molecular Probes,
Eugene Oregon) (18.4 g, 40 mmoles) and triethylamine (5.7 g, 56
mmoles) in tetrahydrofuran (400 mL) is cooled to -5.degree. C. A
solution of ethyl chloroformate (4.3 g, 40 mmoles) in
tetrahydrofuran (50 mL) is added dropwise to the stirred mixture
was 30 minutes. This reaction mixture is stirred for another 30
minutes at -5.degree. C., allowed to reach +5.degree. C., and
sodium borohydride (5.8 g, 150 mmoles) is added portionwise,
followed by dropwise addition of methanol (25 mL) to the stirred
mixture at 5.degree. C. over 30 minutes. The reaction mixture is
allowed to come to room temperature and acidified to pH 2 by
dropwise addition of 6M aqueous HCl. The precipitated salts are
filtered and rinsed with tetrahydrofuran (2.times.50 mL). The
filtrate is evaporated to yield an orange solid, which is added to
a solution of acetic anhydride (100 mL) containing pyridine (50
mL). This mixture is heated to reflux until the orange color
disappears. Solvents are evaporated and the residue is dissolved in
200 mL of ethyl acetate. The solution is extracted 3 times with
cold 5% HCl, then three times with cold water, and then is dried
over anhydrous sodium sulfate. The drying agent is removed by
filtration and the filtrate is evaporated to yield the crude
product as a colorless solid (90%), which can be purified by column
chromatography on silica gel by gradient elution using 30-50%
acetone in hexanes. TLC (1:1 ethyl acetate:hexanes) R.sub.f
=0.5.
Preparation of 5-chloromethylfluorescein (CMF):
5-Acetoxymethylfluorescein (4.9 g, 10 mmoles) is dissolved with
heating and stirring in acetic acid (200 mL). Concentrated
hydrochloric acid (200 mL) is added gradually. The mixture is
heated to reflux for 15 hours and the solvents are evaporated.
Concentrated hydrochloric acid (400 mL) is again added to the
residue and heating to reflux with stirring is continued for
another 15 hours. The reaction mixture is cooled to room
temperature, crushed ice is added (500 mL) and the pH is increased
to about 2-3 by gradual addition of aqueous 1M sodium hydroxide
solution. The resulting orange solid is filtered and washed with
water. The product is chromatographed on a column of silica gel G
using solution of 5% methanol in chloroform for flash elution.
Fractions containing the product are combined to give an
orange-yellow solid (3 g, 80%). TLC on silica gel (1:15:84 acetic
acid:methanol:chloroform) R.sub.f =0.6.
Preparation of 5-chloromethylfluorescein
di-.beta.-D-galactopyranoside, octaacetate:
A mixture of 5-chloromethylfluorescein (150 mg, 0.394 mmole),
powdered 4 .ANG. molecular sieve (0.5 g), sym-collidine (130 .mu.L,
0.98 mmole), and dry silver carbonate (135 mg, 0.49 mmole) in
anhydrous acetonitrile (10 mL) is allowed to stir in the dark for 1
hour at room temperature under an atmosphere of dry nitrogen gas.
1-Bromo-2,3,4,6-tetra-O-acetyl .alpha.-D-galactopyranoside (405 mg,
0.98 mmole) is added slowly with stirring. The mixture is allowed
to stir as described above for 96 hours, after which it is filtered
through a pad of diatomaceous earth. The precipitate is washed with
chloroform (5.times.15 mL). The combined filtrates are extracted
sequentially with 1M aqueous hydrochloric acid solution (1.times.75
mL), saturated aqueous sodium bicarbonate solution (1.times.75 mL),
0.1M aqueous sodium thiosulfate solution (1.times.75 mL) then water
(1.times.75 mL). The combined organic layers are dried over
anhydrous sodium sulfate, filtered, evaporated and dried in vacuo
to a bright yellow foam (620 mg). This crude intermediate is
applied to a column of silica gel G (44.times.440 mm) and eluted by
gradient elution using 5% to 20% acetonitrile in chloroform as
eluent. Fractions containing the first UV absorbing component to
elute from the column are combined and evaporated to a colorless
powder (60 mg, 15%). TLC (19:1 chloroform:methanol) R.sub.f =0.78.
.sup.1 H-n.m.r.(CDCl.sub.3) .delta.: 8.04(s, 1H); 7.71 (dd, 1H);
7.14 (d, 1H); 6.89 (dd,2H), 6.73-6.70 (m,4H); 5.50-5.46 (m,4H);
5.14-5.07 (m,4H); 4.72 (s,2H, --CH.sub.2 Cl); 4.25-4.08 (m,6H);
2.19,2.12,2.06,2.02 (4.times.s,3H each).
Preparation of 5-chloromethylfluorescein
di-.beta.-D-galactopyranoside (CMFDG):
A suspension of 5-chloromethylfluorescein
di-.beta.-D-galactopyranoside, octaacetate (60 mg, 58 .mu.moles) in
anhydrous methanol (15 mL) is cooled to 0.degree. C. in an ice bath
while under an atmosphere of dry nitrogen gas. A solution of
freshly prepared sodium methoxide in methanol (20 .mu.L, 0.75M
solution) is added, and this mixture is allowed to stir at
0.degree. C. for 2.15 hours. The reaction is neutralized with
washed, dry Amberlite IRC50 (H.sup.+) resin (pH 4), filtered and
evaporated to approximately 25 mL total volume. The product is
crystallized by addition of anhydrous diethyl ether (150 mL) and
stored at -12.degree. C. The colorless crystalline product is
isolated by filtration through a Nylon 66 membrane filter (0.45
pore size), washed with fresh diethyl ether and dried in vacuo to
an off-white powder (1st crop, 15 mg, 37% ). Thin layer
chromatography (TLC) (7:1:1:1 ethyl acetate:methanol:water:acetic
acid) R.sub.f =0.31; (3:1:1 n-butanol:methanol:water) R.sub.f
=0.56. .sup.1 H NMR spectroscopy (d.sub.6 -DMSO) .delta.: 8.10(s,
1H); 7.86(d, 1H); 7.35(d, 1H); 7.00(d, 2H); 6.80-6.68(m,4H);
5.47(dd,2H,2.times.H); 5.20(m,2H,2.times.--OH);
4.98(s,2H,--CH.sub.2 Cl); 4.97(m,2H); 4.88(m,2H); 4.70(m,2H);
4.51(d,2H); 3.73-3.20(m,10H).
Example 2
PREPARATION OF A SUBSTRATE HAVING A PHOSPHATE BLOCKING GROUP AT THE
7-POSITION AND A CHLOROMETHYL GROUP AT THE 4-POSITION OF
COUMARIN
The following compound is prepared: ##STR19##
Preparation of 4-chloromethyl-7-hydroxycoumarin:
Ethyl 4-chloroacetoacetate (9.38 g, 56.99 mmoles) containing
resorcinol (6.27 g, 56.99 mmoles), is slowly added to 4.99 mL
(59.88 mmoles) concentrated sulfuric acid. The resulting solution
is stirred for 20 min. after which time the starting materials have
been consumed (silica gel thin layer chromatography (TLC) (1521
chloroform:methanol). The reaction mixture is poured into 50 mL
crushed ice, and the resulting precipitate is triturated five times
with 50 mL 0.degree. C. ice-H.sub.2 O to yield a semicrystalline
solid which is dried in vacuo (8.66 g, 72% yield). Silica gel TLC
analysis of this material shows one major product with an R.sub.f
of 0.48 (15:1 chloroform:methanol). In addition, 2.0 g of this
material is purified on a 4 cm.times.15 cm column of 35-70 .mu.m
silica gel. Elution is carded out by a stepwise gradient starting
with chloroform (500 mL) and finished with 9:1 chloroform:methanol
(500 mL). Ten 100 mL fractions are collected and monitored by
silica gel TLC (15:10 chloroform:methanol). Fractions containing
the pure product are combined, evaporated and dried (1.1 g, 55%
recovery, 40% yield). .sup.1 H NMR spectroscopy (DMSO-d.sub.6)
.delta.4.95 (s, 2H); 6.42 (s, 1H); 6.75 (s, 1H); 6.85 (d, 1H); 7.67
(d, 1H). Melting point=143.degree. C.
Preparation of 4-chloromethyl-7-coumarinylphosphate:
To a solution of 4-chloromethyl-7-hydroxycoumarin (211 mg, 1.0
mmole) in dry pyridine (5 mL) at 0.degree. C. under dry N.sub.2
(g), is added a solution of phosphorus oxychloride (0.105 g, 1.0
mmole) in pyridine (1.0 mL) at 0.degree. C. The reaction is rapid;
by silica gel TLC (15:1 chloroform:methanol and 7:1:1:1 ethyl
acetate:methanol:H.sub.2 O:acetic acid) it is determined that the
starting materials have been consumed. The reaction mixture is then
poured into 15 mL crushed ice, extracted with 5.times.50 mL ether,
and lyophilized from H.sub.2 O. This material is then purified by
chromatographic separation on a column of lipophilic SEPHADEX LH 20
(3.times.45 cm). Elution is carried out with H.sub.2 O. The product
containing fractions are lyophilized. .sup.1 H NMR spectroscopy
(DMSO-d.sub.6) .delta.5.0 (s, 2H); 6.60 (s, 1H); 7.20-7.30 (s, 1H);
7.40-7.50 (d, 1H); 7.80-7.90 (d, 1H).
Example 3
PREPARATION OF A SUBSTRATE HAVING A GALACTOPYRANOSIDE BLOCKING
GROUP AT THE 7-POSITION AND A CHLOROMETHYL GROUP AT THE 4-POSITION
OF COUMARIN
The following compound is prepared: ##STR20##
Preparation of 7-(2,3,4,6-tetra-O-acetyl
.beta.-D-galactopyranosyloxy)-4-chloromethylcoumarin:
A mixture of 7-hydroxy-4-chloromethylcoumarin (107 mg, 0.51 mmole),
activated 3 .ANG. molecular sieves (0.5 g), sym-collidine (100
.mu.L, 0.76 mmole) and silver carbonate (208 mg, 0.75 mmole) in
anhydrous dichloromethane (4 mL) is allowed to stir in the dark at
room temperature for 1 hour. 1-Bromo-2,3,4,6-tetra-O-acetyl
.alpha.-D-galactopyranoside (316 mg, 0.77 mmole) is added slowly
over a period of 20 minutes, and the mixture is allowed to stir as
described above for 18 hours. The reaction mixture is filtered
through a pad of diatomaceous earth. The precipitate is washed with
chloroform (5.times.10 mL), and the combined organic filtrates are
extracted with 1M aqueous HCl (1.times.75 mL), saturated aqueous
sodium carbonate solution (1.times.75 mL), 1M sodium thiosulfate
(1.times.75 mL), and water (1.times.75 mL). The organic layer is
dried over anhydrous sodium sulfate, filtered, and evaporated under
reduced pressure to a pale yellow oil (400 mg). The oil is applied
to a column of silica gel G (100 g) and eluted by gradient elution
using 0-10% ethyl acetate in chloroform. Fractions containing the
first UV absorbing component to elute from the column are combined
and evaporated to a colorless foam (256 mg, 93%). T.l.c.
(SiO.sub.2) (8:2 chloroform:ethyl acetate) R.sub.f =0.37. .sup.1
H-n.m.r. (CDCl.sub.3) .delta.: 7.6(d, 1H); 7.3(s, 1H); 7.0(dd, 1H);
6.5(s, 1H); 5.55(d, 1H,H-1); 5.5(d, 1H); 5.2(m,2H);
4.6(s,2H,--CH.sub.2 Cl); 4.3-4.0(m,3H); 2.28(s,3H); 2.20(s,3H);
2.15(s,3H); 2.08 (s,3H).
Preparation of
7-(.beta.-D-galactopyranosyloxy)-4-chloromethylcoumarin
(Cl-MUG):
A suspension of dry
7-(2,3,4,6-tetra-O-acetyl-.beta.-D-galactopyranosyloxy)-4-chloromethylcoum
arin (250 mg, 0.46 mole) in anhydrous methanol (40 mL) is cooled to
0.degree. C. in an ice-bath while under an atmosphere of dry
nitrogen gas. A solution of freshly prepared sodium methoxide in
methanol is added (1.0 mL, 0.77M solution) and this mixture is
allowed to stir at 0.degree. C. for 1 hour then at ambient
temperature for 1.5 hours. The reaction is neutralized to pH 4 with
AMBERLITE IRC 50 (H+) resin then filtered, with the resin being
washed with methanol 5.times.10 mL). The combined filtrates are
evaporated to dryness and dried in vacuo to a white foam (200 mg),
which is recrystallized from methanol:diethyl ether (1:10, 250 mL)
to yield a colorless powder (166 mg, 96%) T.l.c. (SiO.sub.2) (6:4
ethyl acetate:methanol) R.sub.f =0.53. .sup.1 H NMR spectroscopy
(D.sub.2 O+10% d.sub.6 -DMSO) .delta.: 7.9(d, 1H); 7.2(m,2H),
6.6(s, 1H), 5.2(d, 1H,H-1); 4.9(s,2H,--CH.sub.2 Cl); 4.6(d,
1H,H-4), 4.0-3.4(m, 5H).
Example 4
PREPARATION OF A SUBSTRATE HAVING A GLUCURONIC ACID BLOCKING GROUP
AT THE 7-POSITION AND A CHLOROMETHYL GROUP AT THE 4-POSITION OF
COUMARIN
The following compound is prepared: ##STR21##
Preparation of 4-chloromethyl-7-coumarinyl-(2,3,4-tri-O-acetyl
.beta.-D-glucopyranosiduronide, methyl ester):
A mixture of 7-hydroxy-4-chloromethylcoumarin (520 mg, 2.47 mmole)
and powdered 4 .ANG. molecular sieves (0.5 g) are suspended in
anhydrous dichloromethane (25 mL), and allowed to stir under dry
nitrogen gas for 0.25 hours. Sequentially, anhydrous sym-collidine
(489 .mu.L, 3.7 mmole), dry silver carbonate (1.02 g, 3.7 mmole)
and 1-bromo-2,3,4-tri-O-acetyl-.alpha.-D-glucopyranosiduronic acid,
methyl ester (1.47 g, 3.7 mmole) are each added slowly with
stirring to the above mixture. This mixture is allowed to stir
protected from light at room temperature under an atmosphere of dry
nitrogen for 96 hours. The reaction mixture is filtered through a
pad of diatomaceous earth. The precipitate is washed with
chloroform (5.times.15 mL) and the combined filtrates sequentially
are extracted with 1M aqueous HCl (1.times.100 mL), saturated
aqueous sodium bicarbonate solution (1.times.100 mL), saturated
sodium carbonate solution (1.times.100 mL), 0.1M sodium thiosulfate
solution (1.times.100 mL) and water (1.times.100 mL). The combined
organic layers are dried over anhydrous sodium sulfate, filtered,
evaporated, and dried in vacuo to a tan foam. This is applied to a
column of silica gel G (100 g) and eluted by gradient elution using
0-5% ethyl acetate in chloroform as eluent. Fractions containing
the first UV absorbing product to elute from the column are
combined and evaporated to a colorless foam (560 mg, 43%). T.l.c.
(19:1 chloroform:ethyl acetate) R.sub.f =0.81; (8:2
chloroform:ethyl acetate) R.sub.f =0.39.
Preparation of 4-chloromethyl-7-coumarinyl
.beta.-D-glucopyranosiduronide, methyl ester:
A suspension of 4-chloromethylcoumarin 7-(2,3,4-tri-O-acetyl
.beta.-D-glucopyranosiduronate, methyl ester (560 mg, 1.06 mmole)
in anhydrous methanol (50 mL) is cooled to 0.degree. C. in an
ice-bath under an atmosphere of dry nitrogen gas. A solution of
freshly prepared sodium methoxide is added in two portions
(2.times.500 .mu.L, 1.37M solution) over a period of one hour. This
mixture is allowed to stir as above for 2 hours. The reaction is
neutralized with washed, dry AMBERLITE IRC 50 (H.sup.+) resin (pH
4), filtered, and evaporated to a clear light yellow glass which is
dried in vacuo overnight (410 mg, 99%). SiO.sub.2 TLC (8:2 ethyl
acetate:methanol) R.sub.f =0.75.
Preparation of 4-chloromethyl-7-coumarinyl
.beta.-D-glucopyranosiduronic acid (Cl-MUGluC):
A solution of 4-chloromethylcoumarin
7-.beta.-D-glucopyranosiduronide, methyl ester (205 mg, 0.53 mmole)
in methanol (4 mL) is added to an ice-cold solution of 0.04M LiOH
(14.5 mL, 0.58 mmole) and allowed to stir at 0.degree. C. for 9
hours. After neutralization with AMBERLITE IRC 50 (H.sup.+) resin,
the mixture is filtered. The methanol is evaporated under reduced
pressure, and the aqueous solution is lyophilized to a tan powder
(300 mg, 78%). An analytical sample is purified by SEPHADEX LH 20
column chromatography (28.times.250 mm) with elution by water.
Fractions containing the second major component to elute from the
column are lyophilized to a colorless foam (62 mg from 125 mg
applied to the column). TLC (SiO.sub.2)(7:1:1:1 ethyl
acetate:methanol:water:acetic acid) R.sub.f =0.47. .sup.1 H NMR
spectroscopy (d.sub.6 -DMSO) is consistent with the proposed
structure.
Example 5
PREPARATION OF A SUBSTRATE HAVING TWO GUANIDINOBENZOATE BLOCKING
GROUPS AND A CHLOROMETHYL GROUP AT THE 5-POSITION OF
FLUORESCEIN
The following compound is prepared: ##STR22##
Preparation of 5-chloromethylfluorescein di-guanidinobenzoate:
To a solution of 5-chloromethylfluorescein (30 mg, 79 .mu.moles) in
anhydrous dimethylformamide (5 mL) containing dry sym-collidine (5
mL) is added dicyclohexylcarbodiimide (37 mg, 179 .mu.moles) and
p-guanidinobenzoic acid (43 mg, 199 .mu.moles). This mixture is
allowed to stir at room temperature under an atmosphere of dry
nitrogen for 72 hours. The reaction mixture is filtered through a
pad of diatomaceous earth. The precipitate is washed with methanol,
and the filtrate is evaporated to an oil, which is crystallized by
addition of diethyl ether (100 mL). The product is recrystallized
from a mixture of chloroform and methanol.
Example 6
PREPARATION OF AMINOCOUMARIN WITH A CHLOROMETHYL GROUP AT THE 4
POSITION
The following compound is prepared: ##STR23##
Preparation of 3-hydroxyphenylurethane:
A mixture of m-aminophenol (10 g, 92 mmoles) dry pyridine (10 mL)
and dry tetrahydrofuran (THF) (10 mL) is cooled to 0.degree. C. in
an ice-bath. Ethyl chloroformate (10 g, 92 mmoles) is added
dropwise over 2 hours so that the temperature does not exceed
5.degree. C. After the addition is complete, the ice bath is
removed and the reaction mixture is allowed to stir overnight at
room temperature. The THF and pyridine are removed under reduced
pressure to give a yellow oil, which is dissolved in chloroform (50
mL). The resulting solution is washed with water (200 mL) and
followed by saturated NaCl solution and dried over anhydrous sodium
sulfate. The chloroform is removed under reduced pressure to yield
yellow oil which is triturated with toluene (5 mL), and cooled
overnight at 4.degree. C. The shiny, colorless crystals are
filtered, washed with cold toluene and dried. Yield: 84%.
Preparation of 7-carbethoxyamino-4-chloromethylcoumarin:
A suspension of ethyl 3-hydroxyphenylurethane (1.81 g, 0.01 mmole),
ethyl 4-chloroacetoacetate (1.81 mL, 0.011 mole) and 70% H.sub.2
SO.sub.4 (50 mL) is stirred for 4 hours at room temperature. The
clear solution is poured into 400 mL of ice-water, with constant
stirring, to yield a yellowish precipitate. The solid is filtered,
washed with water and dried. The product is recrystallized from
methanol to give colorless needles (86%).
Preparation of 7-amino-4-chloromethylcoumarin:
A mixture of 7-carbethoxyamino-4-chloromethylcoumarin (2.81 g, 0.01
mole), concentrated sulfuric acid (10 mL) and glacial acetic acid
(10 mL) is heated at 130.degree. C. in an oil bath for 1 hour. On
cooling, a yellow precipitate is deposited. The mixture is poured
into 200 mL of ice-water and left overnight. The resulting solution
is made slightly basic (pH 8) with dilute NaOH solution and is then
cooled by the addition of ice chips. The yellow precipitate is
filtered, washed with water and dried. The product is
recrystallized from chloroform to give yellow needles. Yield:
79%.
Several papers have been published on synthesis of the amino acid
and peptide amides of 7-amino-4-methylcoumarin that can be used to
prepare peptides from 7-amino-4-chloromethylcoumarin, for instance
the leucine amide synthesized by Kanaoka, et al, A New Fluorogenic
Substrate for Aminopeptidase, CHEM PHARM BULL 25, 603 (1977); the
proline amide by Yoshimoto, et al, Post Proline Cleaving Enzyme,
BIOCHEM BIOPHYS ACTA 569, 184 (1979; and a peptide substrate for
plasmin by Pierzchala, A New Fluorogenic Substrate for Plasmin,
Biochem J. 183, 555 (1979).
Example 7
PREPARATION OF A SUBSTRATE HAVING AN OCTANOYL ESTER BLOCKING GROUP
AT THE 7-POSITION AND A CHLOROMETHYL GROUP AT THE 4-POSITION OF
COUMARIN
The following compound is prepared: ##STR24##
Preparation of 7-octanoyloxy-4-chloromethylcoumarin:
7-Hydroxy-4-chloromethyl coumarin (0.210 g, 1.0 mmole) is dissolved
in dry dimethylformamide (3 mL) containing octanoyl chloride (0.163
g, 1.0 mmoles). To this mixture is added a catalytic quantity of
diisopropylethylamine. After stirring at ambient temperature for 17
hours, the reaction is quenched with water 10 mL. This mixture is
extracted with chloroform (2.times.10 mL). The organic layer is
dried over anhydrous sodium sulfate, filtered, and the solvent is
removed in-vacuo. The product residue is purified by chromatography
(5.times.17 cm column of 35-70 .mu.m silica gel G), and eluted with
chloroform. Fractions containing product are combined, evaporated
and dried in-vacuo. The non-fluorescent residue is collected after
crystallization from methanol:diethyl ether (1:5).
Example 8
PREPARATION OF A SUBSTRATE HAVING A METHYL ETHER BLOCKING GROUP AT
THE 7-POSITION AND A CHLOROMETHYL GROUP AT THE 4-POSITION OF
COUMARIN
The following compound is prepared: ##STR25##
Preparation of 7-methoxy-4-chloromethylcoumarin:
To a mixture of 3-methoxyphenol (1.24 g, 10.0 mmoles) and ethyl
4-chloroacetoacetate (1.65 g, 10.0 mmoles) is added 0.56 mL (10.1
mmole) concentrated H.sub.2 SO.sub.4. The reaction mixture
spontaneously forms a waxy solid. To this is added 25 mL H.sub.2 O.
The solid is broken up, heated to 100.degree. C., and allowed to
cool. The solid is separated by filtration. The product is
recrystallized from 2:1 ethanol:chloroform. The crystals are
filtered and washed with H.sub.2 O (1.33 g, yield: 59%).
Example 9
PREPARATION OF A PEPTIDASE SUBSTRATE HAVING A p-CHLOROMETHYLBENZOYL
GROUP ON THE 6'-POSITION AND LEUCINE ON THE Y-AMINO POSITION OF
RHODAMINE 110
The following compound is prepared: ##STR26##
Preparation of (t-BOC-L-leucine)-rhodamine 110:
To a solution of L-leucine with a t-BOC protected amino group (0.68
g, 5.45 mmol) in 100 mL dry 1:1 pyridine:DMF at 0.degree. C. is
added 0.52 g 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide,
hydrochloride (EDAC, 2.73 mmol) in one portion. The mixture is
stirred at 0.degree.-5.degree. C. for 15 minutes, and 2 g rhodamine
110 (5.45 mmol) is added in one portion. The resulting mixture is
allowed to warm to room temperature and stirred for 2 days. Solvent
is removed from the reaction mixture under vacuum, and the residue
is purified using column chromatography (silica gel, 3% MeOH in
CHCl.sub.3). Yield of the t-BOC-leucine conjugate is 1.15 g.
Preparation of (t-BOC-L-leucine)-rhodamine
110-p-chloromethylbenzamide:
To a solution of the 1.15 g t-BOC-L-leucine conjugate prepared
above (2.12 mmol) and diisopropylethylamine (0.56 mL, 3.17 mmol) in
20 mL CHCl.sub.3 at 0.degree. C. is added dropwise a solution of
p-chloromethylbenzoyl chloride (0.5 g, 2.54 mmol) in 10 mL
CHCl.sub.3. The solution is allowed to warm to room temperature and
then stirred overnight. Solvent is removed from the solution under
vacuum and the residue is purified using column chromatography
(silica gel, 10:0.1 CHCl.sub.3 /MeOH). The resulting crude product
is purified again using column chromatography (silica gel, 7:3
ethyl acetate: hexanes). Yield of t-BOC-L-leucine-rhodamine
110-p-chloromethylbenzamide is 0.15 g.
Preparation of L-leucine-rhodamine 110-p-chloromethylbenzamide:
To a solution of the previously t-BOC-L-leucine-rhodamine
110-p-chloromethylbenzamide (0.15 g, 0.22 mmol) in MeOH at
0.degree. C. is added 2 mL trifluoroacetic acid. The solution is
stirred at 0.degree. C. for 15 minutes, then solvent is removed
under vacuum. The residue is redissolved in 2 mL MeOH to which 2
drops of concentrated HCl has been added. The resulting solution is
added dropwise to 50 mL vigorously stirred diethyl ether. The
resulting precipitate is collected by centrifugation and dried
under vacuum overnight. The yield of the L-leucine-rhodamine
110-p-chloromethylbenzamide complex is 0.1 g. (mp 275.degree. C.,
dec).
Variation in spacers:
L-leucine-rhodamine 110-p-chloromethylbenzenesulfonamide is
prepared by reacting the rhodamine 110 with
p-chloromethylbenzenesulfonyl chloride in place of
p-chloromethylbenzoyl chloride. Similar substrates having a
carbonyl spacer or sulfonyl spacer are prepared using chloroacetyl
chloride and chloromethylsulfonyl chloride, respectively, in the
presence of a suitable base.
Example 10
PREPARATION OF A PEPTIDASE SUBSTRATE HAVING A
p-CHLOROMETHYLBENZENESULFONAMIDE GROUP AT THE 3'-HYDROXYL AND
L-LEUCINE ON THE 6'-AMINE OF RHODOL
The following compound is prepared: ##STR27##
Preparation of N-(t-BOC-leucine)-rhodol:
To a 50 mL round bottom flask cooled in an ice/water bath is added
15 mL dry DMF/pyridine (1:1 v/v). The solution is stirred for 10
minutes, followed by the addition of 1.0 g (4.3 mmol) of
N-t-BOC-L-leucine and 0.83 g (4.3 mmol) of
1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDAC). After 10-15
min of stirring, 1.4 g (4.3 mmol) of rhodol dissolved in 15 mL
pyridine/DMF is added. After stirring for two hours in ice bath,
the solution is warmed to room temperature and stirred an
additional two days. The solvent is removed under high vacuum at
room temperature. The residue is purified using column
chromatography (silica gel, MeOH/CHCl.sub.3) and characterized by
thin layer chromatography and .sup.1 H NMR spectroscopy.
Preparation of p-chloromethylbenzenesulfonyl chloride:
To a 250 mL flask, fitted with addition funnel, reflux condenser
and thermometer, is placed 50 g (0.43 mole) of chlorosulfonic acid.
Benzyl chloride, (18 g, 0.14 mole) is added to the reaction
mixture, slowly, with continuous stirring, over a period of two
hours. The temperature of the reaction is kept near room
temperature using a water bath. After the addition is complete, the
stirring is continued for at least one hour. After analysis by thin
layer chromatography shows that the reaction is complete, the
reaction mixture is poured into 150 g of crushed ice. The solid is
collected and washed with cold water several times. The crude
product is further purified by recrystallization. The product is
characterized using .sup.1 H NMR spectroscopy.
Preparation of
N-(t-BOC-leucine)-rhodol-p-chloromethylbenzenesulfonyl ester:
To a stirred solution of N-(t-BOC-L-leucin)-rhodol (1.0 g, 18 mmol)
and triethylamine (0.2 g, 2.0 mmol) in 15 mL dry DMF cooled in a
ice bath is added dropwise 0.61 g (2.7 mmol) of
p-chloromethylbenzenesulfonyl chloride in 5 mL dry DMF. The
solution is stirred under nitrogen for two hours in an ice bath and
then two days at room temperature. The solvent is removed under
high vacuum at room temperature. The crude product is purified
using column chromatography (silica gel, MeOH/CHCl.sub.3). The
product is characterized using .sup.1 H NMR spectroscopy.
Preparation of N-leucine-rhodol-p-chloromethylbenzenesulfonyl
ester:
The protected substrate is deprotected using a procedure exactly
analogous to that described in Example 9.
Variation in spacers:
N-(p-Chloromethylbenzoyl)-rhodol: To a stirred cold solution of
rhodol (1.0 g, 3.0 mmol) and triethylamine (0.37 g, 3.6 mmoles) in
15 mL dry DMF in an ice bath is added p-chloromethylbenzoic acid
chloride (0.57 g, 3.0 mmol) in 5 mL dry DMF dropwise over 1/2 hr.
The solution is stirred in the ice bath for 2 hours, and then
warmed to room temperature and stirred an additional 24 hrs. The
solvent is removed at room temperature under high vacuum. The crude
product is purified using column chromatography. The product is
characterized using .sup.1 H NMR spectroscopy.
N-(p-Chloromethylbenzenesulfonyl-rhodol: This product is prepared
exactly analogously to N-(p-chloromethylbenzoyl)rhodol (above)
except using p-chloromethylbenzenesulfonyl chloride in place of
p-chloromethylbenzoyl chloride.
Preparation of other enzyme substrates:
Similar reporter molecules, including the glycosides and
phosphates, are prepared by treating the desired XR-rhodol
intermediate (as prepared above) with the desired BLOCK precursors,
for example those described for fluorescein in Examples 1 and
5.
Example 11
THE PRODUCTS FROM A NEW GALACTOSIDASE SUBSTRATE,
4-CHLOROMETHYLUMBELLIFERYL .beta.-D-GALACTOSIDE (Cl-MUG) ARE WELL
RETAINED IN A LACZ POSITIVE CELLS BEFORE AND AFTER FIXATION
1. Fibroblast Cell Line and Staining Procedure:
1.1. Cell Lines:
NIH/3T3 cells (lacZ negative) and CRE BAG 2 cells (3T3 cells
transformed with a retrovirus containing lacZ gene) are employed
for cellular assays. Both cell lines can be obtained from American
Type Culture Collection Co., Rockville, Md. The cells are grown in
a humidified atmosphere of 5% CO.sub.2 in Dulbecco's modified
Eagle's medium supplemented with 10% calf serum, 50 .mu.g/mL
gentamicin, 300 .mu.g/mL L-glutamine and 10 mM HEPES pH 7.4.
1.2. Stock Solution of Labeling Reagent:
4-Chloromethylumbelliferyl .beta.-D-galactoside (Cl-MUG) (Example
3) is dissolved in DMSO to get a 10 mM stock solution. A 10 mM
stock solution of 4-methylumbelliferyl .beta.-D-galactoside (MUG)
(Molecular Probes) is also made in DMSO as a control. The stock
solutions are kept sealed in brown reagent bottles and stored at
-20.degree. C.
1.3. Working Medium:
100 .mu.L of stock solution is added to 10 mL of fresh culture
medium to prepare a "working medium" containing 100 .mu.M Cl-MUG.
This medium is filter-sterilized by passing through an Acrodisc.TM.
filter (0.45 .mu.m pore size). A working medium containing MUG is
prepared in the same way.
1.4. Staining of Cells:
Cells grown on coverslips are transferred to the working medium and
incubated at 37.degree. C. under normal conditions. Cells are
examined at the desired time for their fluorescence under a Zeiss
microscope equipped with a Hoechst filter set (EX 365 um/EM 480
nm). After incubation for 60 minutes, followed by washing with
fresh medium, fluorescence is observed in the cytoplasmic area of
the lacZ positive CRE BAG 2 cells, but not in 3T3 cells. After 6
hours continuous incubation, the fluorescence intensity of stained
CRE BAG 2 cells reaches its highest level.
1.5. Cytoxicity:
This substrate shows no cytotoxicity to either type of cell. Cells
incubated in 100 .mu.M Cl-MUG working medium for 24 hours look
morphologically normal and have the same population doubling time
as the cells incubated in substrate-free medium. Cells preincubated
in the working medium for 6 hours can be subcultured and incubated
in fresh medium resulting in the formation of a second generation
of cells that is normal. Fluorescence can be detected in the cells
for at least 24 hours following washing of the cells with fresh
medium.
2. Cell Fixation and Dye Retention:
2.1. Fixation of Stained Cells:
The cells grown on coverslips and incubated with either Cl-MUG or
MUG are immersed in 3.7% paraformaldehyde in 80 mM Pipes buffer, pH
6.5 for 4 minutes to allow the paraformaldehyde to penetrate the
cells. The cells are then transferred to 3.7% paraformaldehyde in
PBS. After 6 minutes, the cells are washed three times with PBS
buffer for ten minutes. The coverslips are put on the slides and
sealed.
2.2. Dye Retention:
The fixed cells are examined for their fluorescence under a Zeiss
microscope equipped with a Hoechst filter set. The cells stained
with Cl-MUG are still brightly fluorescent while those stained with
MUG are barely fluorescent. This indicates that the fluorescent
products, enzymatically cleaved from Cl-MUG, react with
intracellular thiols and form cell-impermeant fluorescent adducts,
which improves the dye retention after cell fixation.
Example 12
LABELING OF LACZ POSITIVE CELLS WITH CHLOROMETHYLFLUORESCEIN
DI-.beta.-D-GALACTOSIDE (CMFDG) USING HYPOOSMOTIC SHOCK
Cell Lines:
The same cell lines as used in Example 11 are used for these
experiments.
2. Stock Solutions of Labeling Reagents:
5-Chloromethylfluorescein di-.beta.-D-galactoside (CMFDG) (Example
1) is dissolved in DMSO to get 20 mM stock solution. A 40 mM stock
solution offluorescein di-.beta.-D-galaetoside (FDG) (Molecular
Probes) is also made in DMSO as a control. The stock solutions are
kept sealed in brown reagent bottles and stored at -20.degree.
C.
3. FCS-PBS Solution and Staining Solution:
(A) FCS-PBS Solution: Phosphate buffered saline (GIBCO), 4% fetal
calf serum, 10 mM HEPES, pH 7.2
(B) Staining Solution: CMFDG: 200 .mu.L of stock solution is
diluted with distilled water to 4 mL to get a 1 mM staining
solution. FDG: 400 .mu.L of stock solution is diluted to 4 mL with
distilled water to get a 4 mM staining solution.
4. Staining and Examination of Cells:
Cells grown on coverslips are transferred to a Petri dish
containing 3 mL of FCS-PBS solution and then incubated at
37.degree. C. for 10 minutes. 3 mL of prewarmed (37.degree. C.) 1
mM CMFDG staining solution is added to give a final dye
concentration of 0.5 mM The solutions are mixed rapidly. The cells
are incubated at 37.degree. C. for exactly one minute. To stop the
loading, the cells are transferred to a 1.8 mL of ice-cold FCS-PBS
solution. FDG is loaded into cells by using the same procedure
except that the final dye concentrations is 2 mM. Cells are then
incubated under normal culture conditions to examine the dye
retention. Cells are examined without washing at the desired time
for their fluorescence under a Zeiss microscope equipped with a
FITC filter set (EX 485 nm/EM 530 nm).
5. Cellular Retention:
After incubation for 10 minutes, the lacZ positive CRE BAG 2 cells
loaded with 0.5 mM CMFDG are very well stained and much brighter
than those loaded with 2 mM FDG. After incubation for 4 hours, more
than 70% of CMFDG stained CRE BAG 2 cells are apparently as bright
as after 10 minutes incubation, while the CRE BAG 2 cells stained
with FDG are very dim with high background fluorescence in the
medium. CMFDG shows no cytotoxicity. Cells incubated in 500 .mu.M
CMFDG staining medium for 24 hours appear morphologically normal
and have the same population doubling time as the control.
Example 13
USING CHLOROMETHYLFLUORESCEIN DI-.beta.-D-GALACTOPYRANOSIDE (CMFDG)
TO MEASURE THE LEVEL OF MARKER GENE EXPRESSION
Because the CMFDG substrate generates a product that is so well
retained by cells (Examples 11 and 12), it can be used for
quantitative measurements of lacZ expression. 1. A series of lacZ
gene containing plasmids, each with a modified yeast promoter are
used. When transferred into the appropriate strains of
Saccharomyces cerevisiae, each plasmid confers a different level of
lacZ gene expression. Yeast strains EG123 and HR125-5d, transformed
with these plasmids, are grown in special minimal medium for
plasmid maintenance and, after reaching the appropriate level of
growth, are assayed for lacZ gene expression as measured by
.beta.-galactosidase activity. 2. The .beta.-galactosidase activity
of one aliquot of these transformed yeast cells is measured using
o-nitrophenyl-.beta.-D-galactopyranoside (ONPG).
3. Another aliquot of yeast cells is loaded with the fluorogenic
substrate CMFDG as indicated in Example 12. Following washing to
remove any dye that has leaked from the cells, the fluorescence
intensity of the remaining cells as measured in a CytoFluor 2300
fluorescence plate reader (Millipore) can be measured over time.
Each lacZ-positive yeast strain shows a linear increase in
fluorescence when plotted over time. The amount of increase over
time can be calculated from the slope of the plotted increase using
linear regression. Each yeast strain accumulates fluorescent
product at a characteristic rate, as reflected in the differences
in the slopes of the various lines.
4. The slopes of these lines can be used to calculate the
.beta.-galactosidase activity of each yeast strain. The obtained
values are compared with the assays using ONPG substrate to confirm
that the fluorescence intensity as measured over time correlates
well with the level of lacZ expression (enzyme activity) in these
transformed yeast cells. Intensity measurements in single cells by
flow cytometry using FDG have been extensively described by Nolan
et al. [Nolan G. P., Fiering, S., Nicolas, J. F., Herzenberg, L.
A., PROC. NATL. ACAD. SCI. USA 85, 2603 (1988] that can be improved
by use of CMFDG, which is shown in Example 12 to give a product
that is better retained than that formed from FDG and to be useable
under physiological conditions of incubation. Certain products such
as 4-chloromethylumbelliferyl .beta.-D-galactoside (Cl-MUG) can be
loaded into living cells without requiring hypotonic shock (see
Example 11).
Example 14
MEASUREMENT OF GLUTATHIONE TRANSFERASE ACTIVITY USING
CHLOROMETHYLFLUORESCEIN AS SUBSTRATE
Activity of glutathione transferase in vitro can be assayed
essentially by the method of Grants and Matsumura (INSECT PHYSIOL.
18 (6), 615 (1988)). 1) Reagents: The stock reagents required are:
1) 5-Chloromethylfluorescein (CMF) substrate (Example 1) 10 mg/mL
in DMF, diluted 1:10 in reaction buffer to 1 mg/mL; 2). Reaction
buffer 100 mM potassium phosphate, 15% glycerol pH 6.8; 3).
Glutathione (GSH) 155 mM in 20 mM TRIS, 2 mM DTT, 15% glycerol pH
7.8; 4). Glutathione Transferase from Equine Liver (Sigma #G 6511)
1.0 mg/mL in reaction buffer. 2) Assay. The reaction mixture
consists of 0.7 mL reaction buffer, 0.1 mL GSH, 0.1 mL substrate
and 0.1 mL enzyme. The background is measured and subtracted by
using 0.1 mL of the reaction buffer instead of the enzyme.
Enzymatic activity can be detected at less than 5 minutes at room
temperature. Product formation can be detected by separation of the
polar product from the less polar substrate by a suitable means
such as thin layer chromatography or high performance liquid
chromatography. For instance, product accumulation can be detected
by thin layer chromatography using A) 15:85 methanol:chloroform or
B) 2:5:15 NH.sub.4 OH:isopropyl alcohol:methanol. In system A the
product does not move from the origin whereas the substrate has an
intermediate mobility relative to the solvent front. In system B
the product moves from the origin, with an R.sub.f identical to
that of an authentic standard for the glutathione adduct of
chloromethyl fluorescein prepared by a nonenzyme catalyzed
reaction, whereas the substrate moves with the solvent front. For
quantitative measurement the products are scraped from the plate,
dissolved in 1% aqueous ammonium hydroxide and the absorbance at
492 nm determined using an extinction coefficient of 75,000
cm.sup.-1 M.sup.-1 for fluorescein. Alternatively the fluorescence
of the product is determined using a fluorometer versus a
fluorescein standard with excitation at 492 and emission measured
at 515 nm.
Product accumulation can be quantitated by the following procedure:
1 mL of the reaction mixture is extracted with 2 mL of ethyl
acetate and the pH is adjusted to about 4 (3.5-4.3) with 1M HCl
(.about.20 .mu.L). The aqueous layer is separated using a modified
transfer pipette as a miniature separatory funnel and the
absorbance or fluorescence is determined as above.
Example 15
MEASUREMENT OF CYTOTOXICITY USING CHLOROMETHYLFLUORESCEIN DI
.beta.-D-GALACTOPYRANOSIDE AND
7-(.beta.-D-GALACTOPYRANOSYLOXY)-4-CHLOROMETHYLCOUMARIN
1) Reagents 5-Chloromethylfluorescein di-.beta.-D-galactopyranoside
(CMFDG) (Example 1) and
7-(.beta.-D-galactopyranosyloxy)-4-chloromethylcoumarin (Cl-MUG)
(Example 3) are separately dissolved at 10 mM anhydrous DMSO and
stored frozen at -20.degree. C. until needed. Saponin is dissolved
in PBS at a concentration of 0.04%.
2) Cell Lines:
NIH/3T3 cells (lacZ negative) and CRE BAG 2 cells (3T3 cells
transformed with a retrovirus containing latZ gene) are employed
for cellular assays. Both cell lines can be obtained from American
Type Culture Collection Co., Rockville, Md. The cells are grown in
a humidified atmosphere of 5% CO.sub.2 in Dulbecco's modified
Eagle's medium supplemented with 10% calf serum, 50 .mu.g/mL
gentamicin, 300 .mu.g/mL L-glutamine and 10 mM HEPES pH7.4.
3) Assay using CMFDG:
The experiment is most conveniently performed in a CytoFluor.TM.
2300 fluorescence plate reader (Millipore) but can be performed
qualitatively on a microscope slide or quantitatively in a flow
cytometery, or in any system that permits washing of the cells
following addition of the cytotoxic agent. 200 .mu.L of NIH 3T3
cells are transferred to several wells of a sterilized 96 well
plate and permitted to recover and attach for 1 hour. The cells are
loaded with 10 .mu.M CMFDG for 30 minutes at 37.degree. C. The
brightly fluorescent cells are washed with fresh medium then
reconstituted to 200 .mu.L total volume. Fluorescence of each well
is determined using a 485 nm excitation filter, a 530 nm emission
filter and sensitivity setting 1. To each well is added saponin as
a lysing agent in concentrations varying from 0 to 0.004%.
Following an incubation of approximately 15 minutes the wells are
washed with fresh medium, reconstituted to 200 .mu.L with fresh
medium and remeasured as above. Loss of fluorescence from the
sample is correlated with the loss of integrity of the membrane and
thus the cytotoxicity of the reagent. Using the above conditions it
is found that 50% of the signal is lost when the cells are
incubated with about 0.001% saponin while greater than 90% signal
loss is observed using a 0.02% solution.
4) Assay using Cl-MUG.
The CRE BAG 2 cells are loaded with Cl-MUG as described in Example
11. The assay of viability of the lacZ transfected cells is
conducted essentially as described immediately above for the assay
of NIH 3T3 cells using CMFDG. The results of the saponin
cytotoxicity measurement using the two reagents are comparable for
the two reagents.
Example 16
COMPARISON OF CELLULAR RETENTION OF A CHLOROMETHYL-SUBSTITUTED AND
NON-SUBSTITUTED RHODAMINE 110 PEPTIDASE SUBSTRATES
1) Cell Lines:
NIH/3T3 cells are prepared as described in Example 15.
Staining solutions of bis-(L-leucine)-rhodamine 110 and
L-leucine-rhodamine 110-p-chloromethylbenzamide (Example 9),
respectively, are prepared that are 25 .mu.M in concentration.
Equivalent NIH/3T3 cells are incubated with the same amount of
peptidase substrate for thirty (30) minutes at 37.degree. C. in
Modified Tyrode's buffered saline (135 mM NaCl, 5 mM KCl, 1 mM
MgCl.sub.2, 1.8 mM CaCl.sub.2, 10 mM NaHEPES, 5.6 mM glucose, pH
7.5, plus 0.1% bovine serum albumin).
.[.Adler.]. .Iadd.After .Iaddend.staining, the cells stained with
the bis-L-leucine substrate exhibit substantial leakage of the
rhodamine 110 enzyme reaction product, while the cells stained with
the chloromethyl-substituted Rhodamine 110 substrate show
significantly less leakage. The cells are washed and placed in
fresh media for several hours. The cells stained with
bis-(L-leucine)-rhodamine 110 show no fluorescent signal upon
illumination, while the L-leucine-Rhodamine
110-p-chloromethylbenzamide stained cells show a bright,
well-defined staining pattern when viewed using a fluorescein
long-pass filter set.
Example 17
COMPARISON OF CELLULAR RETENTION OF CHLOROMETHYL-SUBSTITUTED
SUBSTRATE VS. THE ANALOGOUS METHYL- AND TRIFLUOROMETHYL-SUBSTITUTED
SUBSTRATES
CRE-BAG2 cells are prepared as described in Example 15.
Staining solutions of 4-methylcoumarin .beta.-D-galactopyranoside,
4-chloromethylcoumarin .beta.-D-galactopyranoside and
4-trifluoromethylcoumarin .beta.-D-galactopyranoside, respectively,
are prepared that are 10 .mu.M in concentration. Each
galactopyranoside substrate is loaded into CRE-BAG2 cells
expressing .beta.-galactosidase using brief hypotonic shock for
less than five minutes. Cells are then washed free of extracellular
substrate and incubated for three hours in fresh culture medium at
37.degree. C. Each cell sample is then illuminated at 360.+-.20 nm,
and the fluorescence is observed at >400 nm. Fluorescence
intensity data is acquired using a cooled CCD camera and
subsequently stored in digital format. The cell samples incubated
with the methylcoumarin and trifluoromethylcoumarin substrates show
low fluorescent intensity, while the cells incubated with the
galactosidase substrate having a choromethyl substituent are
brightly fluorescent.
It is to be understood that, while the foregoing invention has been
described in detail by way of illustration and example, numerous
modifications, substitutions, and alterations are possible without
departing from the spirit and scope of the invention as described
in the following claims.
* * * * *