U.S. patent number 9,994,863 [Application Number 14/235,219] was granted by the patent office on 2018-06-12 for glyphosate tolerant corn event vco-o1981-5 and kit and method for detecting the same.
This patent grant is currently assigned to Genective. The grantee listed for this patent is Lori Artim Artim Mann, Vadim Beilinson, Laurent Beuf, Nadine Carozzi, Rebekah Deter, Georges Freyssinet, Alain Toppan, Brian Vande Berg. Invention is credited to Lori Artim Artim Mann, Vadim Beilinson, Laurent Beuf, Nadine Carozzi, Rebekah Deter, Georges Freyssinet, Alain Toppan, Brian Vande Berg.
United States Patent |
9,994,863 |
Artim Mann , et al. |
June 12, 2018 |
Glyphosate tolerant corn event VCO-O1981-5 and kit and method for
detecting the same
Abstract
The present invention relates to the field of plant
transformation with genes conferring tolerance to glyphosate. The
invention particularly relates to a maize (corn) plant transformed
with a gene encoding an EPSPS providing the plant tolerance to an
application of glyphosate under conditions where this herbicide is
effective in killing weeds. The invention particularly concerns an
elite transformation event VCO-O1981-5 comprising the gene
construct and means, kits and methods for detecting the presence of
the said elite event.
Inventors: |
Artim Mann; Lori Artim
(Hillsborough, NC), Beilinson; Vadim (Cary, NC), Carozzi;
Nadine (Raleigh, NC), Deter; Rebekah (Champaign, IL),
Vande Berg; Brian (Raleigh, NC), Toppan; Alain
(Cornebarrieu, FR), Beuf; Laurent (Le Broc,
FR), Freyssinet; Georges (Saint-Cyr-au-Mont-d'Or,
FR) |
Applicant: |
Name |
City |
State |
Country |
Type |
Artim Mann; Lori Artim
Beilinson; Vadim
Carozzi; Nadine
Deter; Rebekah
Vande Berg; Brian
Toppan; Alain
Beuf; Laurent
Freyssinet; Georges |
Hillsborough
Cary
Raleigh
Champaign
Raleigh
Cornebarrieu
Le Broc
Saint-Cyr-au-Mont-d'Or |
NC
NC
NC
IL
NC
N/A
N/A
N/A |
US
US
US
US
US
FR
FR
FR |
|
|
Assignee: |
Genective (Chappes,
FR)
|
Family
ID: |
46604300 |
Appl.
No.: |
14/235,219 |
Filed: |
July 26, 2012 |
PCT
Filed: |
July 26, 2012 |
PCT No.: |
PCT/EP2012/064712 |
371(c)(1),(2),(4) Date: |
January 27, 2014 |
PCT
Pub. No.: |
WO2013/014241 |
PCT
Pub. Date: |
January 31, 2013 |
Prior Publication Data
|
|
|
|
Document
Identifier |
Publication Date |
|
US 20140325697 A1 |
Oct 30, 2014 |
|
Related U.S. Patent Documents
|
|
|
|
|
|
|
Application
Number |
Filing Date |
Patent Number |
Issue Date |
|
|
61512695 |
Jul 28, 2011 |
|
|
|
|
Current U.S.
Class: |
1/1 |
Current CPC
Class: |
C12Y
205/01019 (20130101); C12N 15/8275 (20130101); C12N
9/1092 (20130101); C12Q 1/6895 (20130101); Y10T
436/143333 (20150115) |
Current International
Class: |
A01H
5/10 (20180101); C12N 9/10 (20060101); C12N
15/82 (20060101); C12Q 1/68 (20180101) |
References Cited
[Referenced By]
U.S. Patent Documents
Foreign Patent Documents
|
|
|
|
|
|
|
0 507 698 |
|
Oct 1992 |
|
EP |
|
0 508 909 |
|
Oct 1992 |
|
EP |
|
1 167 531 |
|
Jan 2002 |
|
EP |
|
2 078 754 |
|
Jul 2009 |
|
EP |
|
WO 92/04449 |
|
Mar 1992 |
|
WO |
|
WO 92/06201 |
|
Apr 1992 |
|
WO |
|
WO 95/06128 |
|
Mar 1995 |
|
WO |
|
WO 97/04103 |
|
Feb 1997 |
|
WO |
|
WO 2007/064828 |
|
Jun 2007 |
|
WO |
|
WO 2008/100353 |
|
Aug 2008 |
|
WO |
|
WO 2008/112019 |
|
Sep 2008 |
|
WO |
|
Other References
Heck, G. R., et al. "Development and characterization of a CP4
EPSPS-based, glyphosate-tolerant corn event." Crop Science 45.1
(2005): 329-339. cited by examiner .
Padgette, Stephen R., et al. "Development, identification, and
characterization of a glyphosate-tolerant soybean line." Crop
science 35.5 (1995): 1451-1461. cited by examiner .
International Search Report (PCT/ISA/210) dated Dec. 3, 2012 (Three
(3) pages). cited by applicant .
Cheng, Z.M., et al., "Timentin as an alternative antibiotic for
suppression of Agrobacterium tumefaciens in genetic
transformation", Plant Cell Reports (1998) 17, pp. 646-649. cited
by applicant .
De La Riva, G. A., et al., "Agrobacterium tumefaciens: a natural
tool for plant transformation", EJB Electronic Journal of
Biotechnology ISSN: 0717-3458, vol. 1, No. 3, Dec. 15, 1998, pp.
118-133. cited by applicant .
Dellaporta S.L., et al., "A plant DNA Minipreparation: Version II",
Plant Molecular Biology Reporter, vol. 1, No. 4 (1983), pp. 19-21.
cited by applicant .
Depicker, A., et al., "Nopaline Synthase: Transcript Mapping and
DNA Sequence", Journal of Molecular and Applied Genetics (1982),
pp. 561-573. cited by applicant .
Guidance for risk assessment of food and feed from genetically
modified plants, EFSA Journal (2011); 9(5):2150, pp. 1-37. cited by
applicant .
Fang, L., et al., "Sequence of two acetohydroxyacid synthase genes
from Zea mays", Plant Molecular Biology 18 (1992), pp. 1185-1187.
cited by applicant .
Gardner, R., et al., "The complete nucleotide sequence of an
infectious clone of cauliflower mosaic virus by M13mp7 shotgun
sequencing", Nucleic Acids Research, vol. 9, No. 12 (1981), pp.
2871-2888. cited by applicant .
Gelvin, S. B., "Gene exchange by design", Nature, vol. 433, Feb.
2005, pp. 583-584. cited by applicant .
Kelley, P.M., et al., The Complete Amino Acid Sequence for the
Anaerobically induced Aldolase from Maize Derived from cDNA Clones,
Plant Physiol. (1986), vol. 82, pp. 1076-1080. cited by applicant
.
Komari, T., et al., "Vectors carrying two separate T-DNAs for
co-transformation of higher plants mediated by Agrobacterium
tumefaciens and segregation of transformants free from selection
markers", The Plant Journal (1996) 10(1), pp. 165-174. cited by
applicant .
Lawrence C.J., et al., "Maize GDB, the community database for maize
genetics and genomics", Nucleic Acids Research (2004), vol. 32,
Database issue, pp. D393-D397. cited by applicant .
Otten, L., et al., "Sequence and functional analysis of the
left-hand part of the T-region from the nopaline-type Ti plasmid,
pTiC58", Plant Molecular Biology (1991) 41, pp. 765-776. cited by
applicant .
Heck, G. R., et al, "Development and Characterization of a CP4
EPSPS-Based, Glyphosate-Tolerant Corn Event", Crop Science, vol.
45, No. 1, Jan. 2005, pp. 329-339, XP002687299. cited by
applicant.
|
Primary Examiner: Visone; Lee A
Assistant Examiner: Fan; Weihua
Attorney, Agent or Firm: Crowell & Moring LLP
Claims
The invention claimed is:
1. A glyphosate tolerant maize plant comprising in its genome the
nucleotide sequence as set forth in SEQ ID NO: 3.
2. The glyphosate tolerant maize plant of claim 1, wherein the
glyphosate tolerant maize plant is obtained by breeding a maize
plant with a maize plant grown from seeds deposited with NCIMB with
accession number 41842.
3. The glyphosate tolerant maize plant of claim 2, wherein the
glyphosate tolerant maize plant is an hybrid maize plant.
4. The glyphosate tolerant maize plant of claim 1, wherein a part
of the glyphosate tolerant maize plant, cells or seeds comprise a
nucleotide sequence as set forth in SEQ ID NO: 3.
Description
The present invention relates to the field of plant transformation
with genes conferring tolerance to glyphosate. The invention
particularly relates to a maize (corn) plant transformed with a
gene encoding an EPSPS providing the plant tolerance to an
application of glyphosate under conditions where this herbicide is
effective in killing weeds.
The invention particularly concerns an elite transformation event
comprising the gene construct and means, kits and methods for
detecting the presence of the said elite event.
BACKGROUND OF THE INVENTION
Glyphosate tolerant plants are known in the art and well studied in
the past two decades. Glyphosate is an herbicide inhibiting EPSPS
which is an enzyme whose activity is upstream of the aromatic amino
acids pathway leading to the synthesis of the amino acids tyrosine,
tryptophan and phenylalanine. Since glyphosate is a systemic total
herbicide, tolerance in the plant when the herbicide is sprayed
under usual agronomic conditions may only be achieved by genetic
modification of all cells of the plants with an heterologous gene
coding for a glyphosate insensitive EPSPS enzyme, either mutated or
selected from microorganisms known to have evolved such insensitive
EPSPS enzyme.
Glyphosate insensitive EPSPS, gene constructs and plants
transformed with said gene constructs are disclosed inter alia in
EP 507 698, EP 508 909, U.S. Pat. No. 4,535,060, U.S. Pat. No.
5,436,389, WO 92/04449, WO 92/06201, WO 95/06128, WO 97/04103, WO
2007/064828 and WO 2008/100353, and in references cited herein.
The biophysical characteristics of the EPSPS protein are essential
to achieve a good level of tolerance to glyphosate. However, the
choice of regulatory elements providing an adequate expression
level of the insensitive protein in the plant is also important, as
well as the selection of a transformation event, corresponding to a
stable line with a stable and limited number of copies of the gene
being inserted in the genome of the plant, as well as its stability
in the locus where the gene has been inserted is also important to
obtain glyphosate tolerance at a commercial level, sufficient for
the plant to be used for the preparation of seeds to be planted in
a field with a level of tolerance to glyphosate under agronomic
conditions sufficient to allow use of the herbicide at effective
concentrations to kill the weeds without affecting growing
conditions and yields of the crop transformed with the gene
encoding EPSPS protein.
Transformation events selected for the preparation of commercial
varieties of glyphosate tolerant maize (corn) are known in the art,
particularly disclosed in U.S. Pat. No. 6,040,497 and EP 1 167
531.
These varieties of the first generation used for the preparation of
commercial plants currently used in the field have some
drawbacks.
The event GA21 disclosed in U.S. Pat. No. 6,040,497 comprise
multiple copies of a gene construct comprising a rice actin
promoter and intron, a sequence coding for an optimized transit
peptide, as disclosed in EP 505 909 and a sequence coding for a
mutated plant EPSPS comprising two mutations as disclosed in WO
97/04103. The commercially required level of tolerance in the
transformation event is obtained with a complex transit peptide and
multiple copies of the chimeric gene construct.
The event NK603 disclosed in EP 1 167 531, is also a complex event
with the combination of two gene constructs in one locus. The first
gene construct comprises a rice actin promoter and intron, with a
sequence coding for an Arabidopsis EPSPS transit peptide and a
sequence coding for a type II EPSPS resistant to inhibition by
glyphosate, isolated from Agrobacterium strain CP4. The second gene
construct comprises the CaMV 35S promoter and the rice actin
intron, with a sequence coding for an Arabidopsis EPSPS transit
peptide and a sequence coding for a type II EPSPS resistant to
inhibition by glyphosate, isolated from Agrobacterium strain
CP4.
There is a need for a new generation of transformation events
allowing a high glyphosate tolerance to maize (corn) plants grown
under agronomic conditions with a single copy of the foreign gene
construct in the plant genome.
SUMMARY OF THE INVENTION
The invention concerns a maize (corn) plant comprising the event
VCO-O1981-5 representative seeds deposited with NCIMB with
accession number 41842.
The invention also concerns a maize (corn) plant comprising the
VCO-O1981-5 event characterized by the presence of a genomic
flanking sequence-gene construct junctions comprising the sequences
of SEQ ID NO: 1 and/or SEQ ID NO: 2 or SEQ ID NO: 3.
The invention also concerns corn plants progenies comprising the
VCO-O1981-5 event of the invention, characterized by the presence
of the said junctions sequences.
Probes to identify the presence of said junction sequences in a
maize (corn) plant genome, as well as kits and methods for such
identification comprising said probes and their uses, particularly
a method for the detection of the VCO-O1981-5 event and primers,
probes and a kit for such a detection are also part of the
invention.
DETAILED DESCRIPTION OF THE INVENTION
"Transformation event" means a product of plant cell transformation
with a heterologous DNA construct, the regeneration of a population
of plants resulting from the insertion of the transgene into the
genome of the plant, and selection of a particular plant
characterized by insertion of the gene construct into a particular
genome location.
"Gene construct" means, according to the invention, a gene
constructed from different nucleotide sequences, comprising
regulatory elements controlling the expression and translation of a
coding sequence in a host organism. The host organism in the
invention is particularly maize (corn), cells, tissues and whole
plants. The gene construct comprises a promoter region, operably
linked to a coding sequence and a terminator region. It may
comprise enhancers, such as introns, generally linked downstream
the promoter region and upstream the coding region. In the case of
glyphosate tolerance, the coding sequence comprise a sequence
coding for a chloroplast transit peptide, linked to the sequence
coding for an EPSPS enzyme selected for its resistance to
inhibition by glyphosate, either mutated or selected or selected
and mutated from microorganism having developed resistance to
glyphosate.
The gene construct in the event of the invention comprises a DNA
molecule of a sugarcane ubiquitin promoter and intron, operably
linked to a DNA molecule coding for the maize acetohydroxyacid
synthase (AHAS) transit peptide, operably linked to a DNA molecule
coding for the Arthrobacter globiformis EPSPS GRG23ACE5. The gene
construct also comprises a terminator sequence, particularly the
terminator sequence of the 35S CaMV transcript.
The various elements of the gene construct of the invention are
isolated and operably linked according to usual techniques of
molecular biology known and available to the person skilled in the
art.
"Ubiquitin promoter and intron" means the promoter from sugarcane
ubiquitin-4 gene and the intron from sugarcane ubiquitin-4 gene,
from the non-coding 5' region of the ubiquitin-4 gene of Saccharum
officinarum L. as disclosed in Albert and Wei (U.S. Pat. No.
6,638,766) and set forth in SEQ ID NO: 4 and 5, respectively.
"Maize AHAS chloroplast transit peptide" is the N-terminal transit
peptide sequence derived from the Zea mays L. (maize)
acetohydroxyacid synthase (AHAS) gene, as disclosed in Fang et al
(1992) and set forth in SEQ ID NO: 6.
"Arthrobacter globiformis epspsgrg23ace5" means the nucleotide
sequence as set forth in SEQ ID NO: 28 of WO 2008/100353. (SEQ ID
NO: 7).
"35 CaMV terminator sequence" is the non-coding 3' end from the
cauliflower mosaic virus which terminates mRNA transcription and
induces polyadenylation as disclosed in Gardner et al (1981) and
set forth in SEQ ID NO: 8.
"Plant transformation" and selection of transformed plants is
widely disclosed in the art, and more particularly corn
transformation. Techniques for corn transformation and breeding are
now well known in the art, and particularly disclosed in laboratory
notebooks and manuals such as "Transgenic Plants: Methods and
Protocols (Methods in Molecular Biology)" (Leandro Pena, Humana
Press Inc., 2005), "Heterosis and Hybrid Seed Production in
Agronomic Crops" (Amarjit Basra, The Harwoth Press Inc., 1999) and
"The Maize Handbook" (Michael Freeling and Virginia Walbot,
Springer Lab Manuals, 1994). The transformation of corn is more
particularly performed with an Agrobacterium mediated
transformation comprising a transformation vector (Hiei and Komari,
1997, U.S. Pat. No. 5,591,616).
The transformation of a plant with a gene construct generally
comprises the steps of a) inoculating a plant cell with a strain of
Agrobacterium tumefaciens comprising a transformation vector
comprising the gene construct; b) selecting the plant cells having
integrated into their genome the gene construct of the invention;
c) regenerating a fertile plant from the selected plant cell; d)
pollinating the regenerated plant, and; e) selecting progeny plants
tolerant to high doses of glyphosate, then; f) selecting the plants
having stably integrated one unique copy of the gene construct of
the invention.
"Transformation vectors" means a DNA molecule comprising the gene
construct and additional DNA elements allowing introduction of the
gene construct into a plant cell and integration of said gene
construct into the genome of the plant cell. Transformation is an
Agrobacterium mediated transformation, wherein the transformation
vector comprises right and left borders of a T-DNA plasmid from
Agrobacterium tumefaciens flanking the gene construct to be
inserted. Such transformation vectors are well disclosed in the art
and readily available to the person skilled in the art of plant
molecular and cellular biology and plant transformation.
"Right and left borders of a T-DNA plasmid from Agrobacterium
tumefaciens" are DNA sequences of the right and left border
sequences from Ti plasmids and well known and disclosed in the art
of plant transformation. More particularly, the right border (RB)
sequence is used as the initiation point of T-DNA transfer from
Agrobacterium tumefaciens to the plant genome, it is particularly
the right border sequence of nopaline type T-DNA derived from
plasmid pTiT37. (Depicker et al. 1982; Komari et al., 1996). The
left border (LB) sequence defines the termination point of T-DNA
transfer from A. tumefaciens to the plant genome, it is
particularly the left border sequence from Ti plasmid pTiC58.
(Komari et al., 1996; Otten et al., 1999).
"Transformed plants" mean plants having integrated into their
genome the gene construct flanked with the full or a fragment of
the sequence of the right and left borders of a T-DNA plasmid from
Agrobacterium tumefaciens. All cells of the transformed plants have
integrated into their genome the gene construct. The transformed
plant is a fertile plant and more particularly a plant which
agronomic properties (yield, grain quality, drought tolerance,
etc.) are not impaired compared to the same plant not
transformed.
"Insert DNA" is the gene construct flanked by RB and LB sequences
and inserted in the plant genome at a specific locus.
The event is defined by a stable integration of the insert T-DNA of
the invention at a specific locus in the maize (corn) genome.
The insertion defines two unique junctions DNA sequence wherein the
insert T-DNA sequence joins the flanking maize genomic sequences.
By reference to the insert T-DNA, there is a 5' junction DNA
localized in the 5' part of the insert T-DNA and a 3' junction DNA
localized in the 3' part of the insert T-DNA. Non limiting examples
of the event VCO-O1981-5 junctions DNA (or so called "event
VCO-O1981-5 DNA") are set forth in SEQ ID NO: 1, SEQ ID NO:2 or SEQ
ID NO: 3.
The term "event" refers to the original transformed plant and
progeny of the transformed plant that include the heterologous DNA.
The term "event" also refers to progeny produced by a sexual
outcross between the transformed plant and another variety in that
the progeny includes the heterologous DNA.
The term event also refers to progeny produced by sexual
backcrosses between a donor inbred line (the original transformed
line and the progeny) comprising the insert DNA and the adjacent
flanking genomic sequences and a recipient inbred line (or
recurrent line) that does not contains the said insert DNA. After
repeated back-crossing, the insert DNA is present in the recipient
line at the same locus in the genome as in the donor line.
The term "event" or event sequence of VCO-O1981-5 also refers to
the insert DNA from the original transformed plant comprising part
or all of the insert DNA and adjacent flanking genomic sequences
that would be transferred from the donor line to the recipient
line.
The last backcross progeny would be selfed to produce progeny which
are homozygous for the introgressed insert DNA.
These progeny would then be used as inbred parent line to produce
hybrids.
A glyphosate tolerant maize (corn) VCO-O1981-5 (also named 6981
maize (corn)) can be bred by first sexually crossing a donor
parental maize (corn) plant consisting of a maize (corn) plant
grown from the transgenic maize (corn) plant VCO-O1981-5 (also
named 6981 maize (corn)); representative seeds deposited with NCIMB
with accession number 41842 and progeny thereof derived from
transformation with the expression cassettes of the present
invention that tolerates application of glyphosate herbicide, and a
recipient parental maize (corn) plant that lacks the tolerance to
glyphosate herbicide, thereby producing a plurality of first
progeny plants; and then selecting a first progeny plant that is
tolerant to application of glyphosate herbicide; and selfing the
first progeny plant, thereby producing a plurality of second
progeny plants; and then selecting from the second progeny plants a
glyphosate herbicide tolerant plant. These steps can further
include the back-crossing of the first glyphosate tolerant progeny
plant or the second glyphosate tolerant progeny plant to the
recipient parental (or recurrent) maize (corn) plant or a third
parental maize (corn) plant, thereby producing a maize (corn) plant
that tolerates the application of glyphosate herbicide.
Methods for producing a hybrid maize (corn) seed are well known in
the art. The method comprises crossing the plant comprising the
VCO-O1981-5 event deposited on 13 May 2011 by GEMSTAR, rue
Limagrain, BP-1, 63720 Chappes, FRANCE, with NCIMB with accession
number 41842 or said plant progeny comprising the VCO-O1981-5 event
with a different maize (corn) plant and harvesting the resultant
hybrid maize (corn) seed comprising the VCO-O1981-5 event.
It is also to be understood that two different transgenic plants
can also be mated to produce offspring that contain two or more
independently segregating added, transgenes. A method for producing
a maize (corn) plant that contains in its genetic material two or
more transgenes, wherein the method comprises crossing the maize
(corn) plant comprising the VCO-O1981-5 event deposited with NCIMB
with accession number 41842 or said plant progeny comprising the
VCO-O1981-5 event with a second plant of maize (corn) which
contains at least one transgene so that the genetic material of the
progeny that results from the cross contains the transgene(s)
operably linked to a regulatory element and wherein the transgene
is selected from the group consisting of male sterility, male
fertility, insect resistance, disease resistance and water stress
tolerance and herbicide resistance (wherein the transgene confers
resistance to an herbicide selected from the group consisting of
imidazolinone, sulfonylurea, glyphosate, glufosinate).
Selfing of appropriate progeny can produce plants that are
homozygous for both added, exogenous genes. Said maize (corn) plant
comprising two or more transgenes would be used to produce hybrid
maize (corn) seeds wherein the method comprises crossing the said
maize (corn) plant with a different maize (corn) plant and
harvesting the resultant hybrid maize (corn) seeds comprising two
or more transgenes.
Back-crossing to a parental plant and out-crossing with a
non-transgenic plant are also contemplated. Descriptions of other
breeding methods that are commonly used for different traits and
crops can be found in one of several references, e.g., A. Hallauer
and J. B. Miranda in Quantitative genetics in maize breeding. (2nd
edition, Iowa State University press) and R. Bernardo in Breeding
for quantitative traits in plants. (Stemma press.com).
The term event also refers to a maize (corn) plant produced by
vegetative reproduction from the maize (corn) plant comprising the
VCO-O1981-5 event deposited with NCIMB with accession number 41842
or said plant progeny comprising the VCO-O1981-5 event. Vegetative
reproduction can be initiated from a plant part as for example
cells, tissues such as leaves, pollen, embryos, roots, root tips,
anthers, silks, flowers, kernels, ears, cobs, husks, stalks or
tissue culture initiated from said plant part. The term event also
refers to said plant part.
The term event concerns a glyphosate tolerant corn, comprising in
its genome the nucleotide sequences that are at least 95%,
preferably at least 96, 97, 98, or 99% identical to SEQ ID NO: 1 or
SEQ ID NO: 2 or SEQ ID NO: 3.
The invention also concerns the polynucleotide sequences comprising
SEQ ID NO: 1 or SEQ ID NO: 2 or SEQ ID NO: 3 and having any length
from 25 nucleotides to 5092 nucleotides.
Particularly the invention concerns the polynucleotide sequences of
SEQ ID NO: 1, SEQ ID NO: 2 and SEQ ID NO: 3 specific to event
VCO-O1981-5. These polynucleotide sequences are suitable for
selectively identifying the event VCO-O1981-5 in different
biological samples. By biological samples, it is to be understood a
plant, plant part or plant material such as cells, tissues as
leaves, pollen, embryos, roots, root tips, anthers, silks, flowers,
kernels, ears, cobs, husks, stalks or seeds. It is also to be
understood a processed products comprising or derived from plant
part or plant material.
Methods for the detection of the presence or absence of specific
DNA elements in a plant genome are well known in the art. Main
techniques comprise DNA sequence amplification, particularly with
Polymerase Chain Reaction, with specific primers allowing
amplification of the DNA sequence, and hybridization with a probe
specific for the DNA sequence.
The invention comprises a method for the identification of the
presence or the absence of the transformation event VCO-O1981-5 of
the invention, particularly with one of the known techniques.
In a particular embodiment of the invention, the method comprises
the steps of: a) extracting DNA from a biological sample obtained
from a maize (corn) plant, tissue or cell; b) contacting said
extracted DNA with a first and second primers of appropriate length
selected to allow production of an amplicon DNA molecule comprising
all or part of the event sequence of VCO-O1981-5; c) performing an
amplification reaction to produce amplicon DNA molecules, and; d)
detecting the presence or the absence of a nucleotide sequence
comprising all or part of the event sequence of VCO-O1981-5 in the
amplicon molecule.
Primers have generally a length comprised between 10 and 30
nucleotides, and are selected and prepared according to techniques
well known to the person skilled in the art of molecular
biology.
In a particular embodiment of the invention, the amplicon molecule
comprising all or part of the event sequence of VCO-O1981-5
comprises the event junction sequence set forth in SEQ ID NO: 1
and/or the event junction sequence set forth in SEQ ID NO: 2 and/or
a sequence that is at least 95%, preferably at least 96, 97, 98, or
99% identical to SEQ ID NO: 1 or SEQ ID NO: 2.
Advantageously, the first and second primers comprises sequences
homologous to a sequence fragment of the event sequence set forth
in SEQ ID NO: 3, and are selected to be flanking the event
VCO-O1981-5 sequence and to generate an amplicon comprising the DNA
sequences set forth in SEQ ID NO: 1 and SEQ ID NO: 2.
Preferred primers comprise the DNA sequences set forth in SEQ ID
NO: 11 and SEQ ID NO: 12.
In another embodiment of the invention, the method comprises the
steps of: a) extracting DNA from a biological sample obtained from
a maize (corn) plant, tissue or cell; b) contacting said extracted
DNA with probe(s) of sufficient length to hybridize under stringent
conditions with a nucleotide sequence that specifically detect at
least one of VCO-O1981-5 junction sequence; c) subjecting the
extracted DNA and probe(s) to stringent hybridization conditions,
and; d) detecting the hybridization of the probe(s) to the
extracted DNA, wherein detection indicates the presence of an event
VCO-O1981-5 sequence.
The invention also concerns a method for producing a glyphosate
tolerant plant comprising breeding a plant of the invention,
comprising the event VCO-O1981-5 sequence, and selecting progenies
by detecting the presence of the event VCO-O1981-5 sequence,
particularly with the detection method of the invention.
"Amplicon" refers to the product obtained by amplification with a
specific pair of primers of a target nucleotide sequence comprised
in a nucleotide template sequence.
Primers, probes and methods for the identification of the presence
or absence of a specific DNA or amplicon sequence in a corn genome
are well known in the art, particularly disclosed in paragraphs
[0027] to [0043] of EP 1 167 531 which are incorporated herein by
reference, as well as publications cited herein.
Stringent conditions are defined as following. For sequences
comprising more than 30 bases, Tm is defined by the equation:
Tm=81.5+0.41 (% G+C)+16.6 Log (concentration in cations)-0.63 (%
formamide)-(600/number of bases) (Sambrook et al., 1989).
For sequences shorter than 30 bases, Tm is defined by the equation:
Tm=4(G+C)+2(A+T).
Under appropriate stringency conditions, in which non-specific
(aspecific) sequences do not hybridize, the temperature of
hybridization is approximately between 5 and 30.degree. C.,
preferably between 5 and 10.degree. C. below Tm and hybridization
buffers used are preferably solutions of higher ionic force like a
solution 6*SSC for example.
The invention also concerns a kit for detecting the presence or
absence of the VCO-O1981-5 event of the invention in a biological
sample, wherein it comprises primers and/or probes amplifying or
hybridizing to a polynucleotide sequence comprising an event
VCO-O1981-5 DNA sequence.
The invention particularly comprises a first primer of 10 to 30
nucleotides, comprising a sequence homologous to a sequence
fragment of SEQ ID NO: 3 and a second primer of 10 to 30
nucleotides comprising a sequence having complementarity to a
sequence fragment of SEQ ID NO: 3, the first and the second primers
flanking an event VCO-O1981-5 DNA sequence and generating an
amplicon molecule comprising SEQ ID NO: 1 or SEQ ID NO: 2.
Particularly, said first and second primers comprise the sequences
set forth in SEQ ID NO: 11 and SEQ ID NO: 12, respectively.
The invention also concerns an isolated nucleotide sequence
comprising, or consisting essentially of, a sequence set forth in
SEQ ID NO: 11 and/or SEQ ID NO: 12.
The invention also concerns an isolated nucleotide sequence
comprising a sequence set forth in SEQ ID NO: 1 and/or SEQ ID NO:
2, particularly comprising, or consisting essentially of, the
sequence set forth in SEQ ID NO: 3 or a fragment thereof and/or a
sequence that is at least 95%, preferably at least 96, 97, 98, or
99% identical to SEQ ID NO: 1 or SEQ ID NO: 2 or SEQ ID NO: 3.
Techniques for gene constructions as well as techniques for gene
identification using amplification techniques such as PCR or
hybridization techniques are well known in the art, and
particularly disclosed in laboratory notebooks and manuals such as
Sambrook & Russel (2001, Molecular Cloning: A Laboratory
Manual, Cold Spring Harbor, N.Y.).
FIGURES
FIG. 1 represents the transformation vector pAG3541.
FIG. 2 represents the schematic diagram of the selection of event
VCO-O1981-5.
FIG. 3 describes the breeding diagram for event VCO-O1981-5.
FIG. 4 represents the EPSPS GRG23ACE5 expression cassette within
the T-DNA region.
FIG. 5 represents a segregation analysis carried out in the
following generation for the B110 and B109 crosses, and in the next
4 generations for line AAX3.
EXAMPLES
Abbreviations, Acronyms, and Definitions
TABLE-US-00001 AHAS Acetohydroxyacid synthase BLAST Basic Local
Alignment Search Tool Bp Base pair CaMV Cauliflower mosaic virus
CHI-test Pearson's chi-square test CTP Chloroplast transit peptide
DNA Deoxyribonucleic acid EPSPS 5-enolpyruvylshikimate-3-phosphate
synthase (protein) epsps 5-enolpyruvylshikimate-3-phosphate
synthase (DNA sequence) FST Flanking sequence tag GRG23ACE5
Modified EPSPS from Arthrobacter globiformis kbp kilobase pairs LB
Left border PCR Polymerase chain reaction RB Right border T-DNA
Transferred-DNA Ti Tumor-inducing Vir Virulence genes of
Agrobacterium
I. Production of Glyphosate Tolerant Event VCO-O1981-5
Maize event VCO-O1981-5 was generated using a standard
Agrobacterium mediated transformation protocol (Hiei and Komari,
1997). Agrobacterium contains a tumour-inducing (Ti) plasmid, which
includes virulence (vir) genes and a transferred-DNA (T-DNA)
region. Genes of interest can be inserted into the T-DNA region and
thereafter transferred to the plant nuclear genome. The use of a Ti
plasmid with the tumor-inducing genes deleted is commonly known as
disarmed Agrobacterium-mediated plant transformation. Wounded plant
cells produce phenolic defense compounds, which trigger the
expression of the Agrobacterium vir genes. The encoded virulence
(Vir) proteins process the T-DNA region from the Ti-plasmid,
producing a `T-strand`. After the bacterium attaches to a plant
cell, the T-strand and several types of Vir proteins are
transferred to the plant through a transport channel. Inside the
plant cell, the Vir proteins interact with the T-strand, forming a
T-complex. This complex targets the nucleus, allowing the T-DNA to
integrate into the plant genome and express the encoded genes
(Gelvin, 2005).
The recipient organism is the dent type of Zea mays, which belongs
to the genus Zea of the family Gramineae (Hi-II stock material).
This material is supplied in the form of two separate lines Hi-IIA
and Hi-IIB. These lines are then crossed and the resulting embryos
are used as target tissue for transformation. Hi-IIA and Hi-IIB are
partially inbred lines selected out of a cross between corn inbred
lines A188 and B73. As the recipient organism, hybrid Hi-II of Zea
mays was produced by crossing the partially inbred Hi-IIA and
Hi-IIB lines which were obtained from Maize Genetics COOP Stock
Center (Urbana, Ill., USA). The T-DNA region in transformation
vector pAG3541 was introduced using Agrobacterium into the hybrid
Hi-II by co-cultivation (approximately 72 hours at 22.degree. C. in
the dark) with immature maize embryos. Transformed callus was
selected on glyphosate-containing medium as a selective agent. The
antibiotic timentin (200 ppm) was included in tissue culture media
to eliminate Agrobacterium cells from the callus after
transformation (Cheng et al., 1998).
The transformation vector pAG3541 (FIG. 1) was used to transfer the
epsps grg23ace5 expression cassette to maize. Only the T-DNA
existing between the right and left border (RB and LB) sequences
respectively is integrated into the maize genome. The DNA regions
outside the T-DNA borders are not transferred. Outside these
borders bacterial antibiotic resistant marker genes are required
for the introduction and maintaining of the vector in the
Agrobacterium cells. The vir genes are required for the production
of the T-DNA transfer complex (De la Riva et al., 1998).
Out of 100 events generated in T0, VCO-O1981-5 event was selected
through multiple evaluation field trials for glyphosate tolerance
and agronomic performances like germination, vegetative
characteristics (such as plant height, grain weight) and
reproductive characteristics (such as days to 50% pollen shed, days
to 50% silking, yield).
The schematic diagram of the selection of event VCO-O1981-5 is
provided on FIG. 2.
Event VCO-O1981-5 was also selected for good molecular
characteristics based on the unicity and integrity of the insert
and the stability of the genomic insertion locus and its
inheritance.
More specifically, event VCO-O1981-5 was selected for its low level
of allergenicity risk. Twelve Open Reading Frames (ORFs), created
by the insertion of the T-DNA in the genome, have been identified
at the junctions between the T-DNA and the maize genome. For this
analysis, we consider that ORFs are any potential coding region
between two stop codons as defined by the European Food safety
Authority (EFSA). Bioanalysis of ORFs was first performed, followed
by analysis for putative allergenic motifs in the determined ORFs
using an 80 amino acids (AA) sliding window and 8 AA exact match.
Analysis was performed according to Codex Alimentarius (2003) and
using AllergenOnline Database Version 11 from February 2011
(http://www.allergenonline.org/databasefasta.shtml). Two potential
hits were identified using the 80 AA sliding window, but it is
highly unlikely that the identified genetic sequence would generate
a translatable mRNA sequence and since these sequences were
identified from the native maize genome, there is no impact to the
allergenicity risk assessment. Finally, event VCO-O1981-5 was
selected due to its advantageous location in a genomic region
harboring a good recombination rate. This characteristic is notably
important for the conversion program in which the event will be
further used.
FIG. 3 describes the breeding diagram for event VCO-O1981-5.
II. Donor Genes and Regulatory Sequences
A. Transformation Vector Map
Event VCO-O1981-5 was produced by disarmed Agrobacterium-mediated
transformation using the plasmid pAG3541. This transformation
vector contains the epsps grg23ace5 expression cassette within the
T-DNA region (FIG. 4).
B. Description of the Genes and Regulatory Sequences
A synthetic coding region sequence comprising a maize chloroplast
transit peptide (acetohydoxyacid synthase) (Fang et al., 1992) and
a gene encoding EPSPS GRG23ACE5 enzyme was generated. The synthetic
gene was subcloned downstream from the ubiquitin-4 promoter from
Saccharum officinarum L. (Albert and Wei, 2003) and upstream from
the terminator 35S of Cauliflower mosaic virus (Gardner et. al.,
1981) to create plasmid pAX3541. The promoter:gene::terminator
fragment from this intermediate plasmid (based on pSB11, Japan
Tobacco, Inc. (Hiei and Komari, 1997)) was mobilized into
Agrobacterium tumefaciens strain LBA4404, which also harbors the
plasmid pSB1, using triparental mating and plating on media
containing spectinomycin, streptomycin, tetracycline and rifampicin
to form a final plasmid, pAG3541. Rifampicin is included as an
additional selection for Agrobacterium as the rifampicin resistance
marker gene is present in the Agrobacterium chromosomal DNA. The
integrity of cointegrate product of pSB1 and pAX3541-plasmid
pAG3541 was verified by Southern hybridization.
The amino acid sequence of the wild-type EPSPS isolated from
Arthrobacter globiformis was altered using a directed evolution
technique resulting in the EPSPS GRG23ACE5 protein described herein
and expressed in event VCO-O1981-5. The deduced amino acid sequence
of the EPSPS GRG23ACE5 protein is shown below (SEQ ID NO: 23).
TABLE-US-00002 metdrlvipg sksitnrall laaaakgtsv lvrplvsadt
safktaiqal ganvsadgdd wvveglgqap nldadiwced agtvarflpp fvaagqgkft
vdgseqlrrr plrpvvdgir hlgarvsseq lpltieasgl aggeyeieah qssqfasgli
maapyarqgl rvkipnpvsq pyltmtlrmm rdfgietstd gatvsvppgr ytarryeiep
dastasyfaa asavsgrrfe fqglgtdsiq gdtsffnvlg rlgaevhwas nsvtirgper
ltgdievdmg eisdtfmtla aiapladgpi titnigharl kesdrisame snlrtlgvqt
dvghdwmriy pstphggrvn chrdhriama fsilglrvdg itlddpqcvg ktfpgffdyl
grlfpekalt lpg
III. Transgene Copy Number Analysis
Maize genomic DNA was isolated (Dellaporta et al., 1983) and
quantified by fluorimetry. DNA restriction, gel electrophoresis,
Southern blotting and hybridization with radiolabeled probes were
carried out according to standard procedures (Sambrook et al.,
1989). Total genomic DNA was purified from event VCO-O1981-5 and
digested with appropriate restriction endonucleases to determine
both insert copy number and insert integrity.
Templates for radioactive probes synthesis were prepared using
standard PCR methods. Oligonucleotide primers specific to promoter
and terminator sequences in the T-DNA were used to generate a DNA
probe specific for the T-DNA insert. The DNA probe was labeled with
.sup.32P .alpha.-dCTP using Ready-To-Go DNA labeling beads (GE
Health). The labeled probe was purified over Micro Bio-Spin P-30
Tris-Chromatography Columns (BioRad). Hybridizations were carried
out at 65.degree. C. (Church, 1984). After hybridization, blots
were washed at 65.degree. C., with the final wash containing 1%
(w/v) sodium dodecyl sulfate at pH 7.0. Blots were exposed to Kodak
AR X-OMAT film using a Kodak intensifying screen at -80.degree.
C.
Genomic DNA from event VCO-O1981-5 corn, BC1 negative segregant
corn, and B110 inbred corn was digested with the restriction
enzymes HindIII and NdeI (New England Biolabs, Ipswich, Mass.)
independently. Each of these restriction enzymes cuts once within
the T-DNA region. When hybridized with the epsps grg23ace5 gene
probe, the resulting number of hybridization products would
indicate the insert copy number within the maize genome. Both
digests produced a single band indicating a single copy of the
insert present.
Genomic DNA from event VCO-O1981-5 corn, BC1 negative segregant
corn, and B110 inbred corn was digested with a combination of
HindIII and EcoRI, and independently with MfeI (New England
Biolabs, Ipswich, Mass.). A set of four independent probes (ScUbi4
promoter, ScUbi4 intron, epsps grg23ace5 gene, and 35S terminator)
were used to confirm the integrity of the expression cassette
structure The results of the analysis indicated that the epsps
grg23ace5 expression cassette was intact and the functional
components were found and verified in the expected order in the
inserted DNA.
Southern blot analysis was conducted to verify the absence of the
transformation plasmid components outside of the transferred T-DNA
region. Maize genomic DNA (VCO-O1981-5 event and appropriate
negative controls) was digested with a combination of HindIII and
EcoRI, and independently with MfeI (New England Biolabs, Ipswich,
Mass.). The Agrobacterium plasmid pAG3541 was included as a
positive control for hybridization of the transformation plasmid
components. The probes used were designed to hybridize to the
functional components of the plasmid including the sequence of aad,
tetR, tetA, oriT, virC, virG, and virB.
Southern blot analysis results indicate that none of the vector
probes hybridized to VCO-O1981-5 genomic DNA confirming the absence
of the sequences of the functional components of the plasmid in
event VCO-O1981-5. These same probes however did show hybridization
with the plasmid vector control on each blot indicating that if the
vector sequences were inadvertently transferred to event
VCO-O1981-5 corn, they would have been detected in this
analysis.
Southern blot analysis was conducted on multiple generations of
event VCO-O1981-5 progeny to evaluate the stability of the T-DNA
sequence insertion. Genomic DNA isolated from leaf material of
VCO-O1981-5 plants from four successive breeding generations (BC0,
BC1, BC3, and BC4) and negative controls were digested with the
restriction enzyme HindIII (New England Biolabs, Ipswich, Mass.)
which, as noted earlier, cuts once within the T-DNA region. When
hybridized with the probe specific for the epsps grg23ace5 gene,
VCO-O1981-5 produces a single band approximately 4.0 kb in size.
The transformation plasmid pAG3541 was included as a hybridization
control. All four generations analyzed showed an identical
hybridization pattern producing the identical 4.0 kb band. If the
genetic insert were unstable within the maize genome through
successive breeding of the event, one would expect to detect
changes in the banding pattern produced. The data indicates a
stable insertion site in event VCO-O1981-5.
IV. Sequencing of the Insert and Flanking Genomic DNA
Southern blot analysis has demonstrated that event VCO-O1981-5
contains a single intact T-DNA insert containing a single
expression cassette. The sequence of the transgenic locus including
5' and 3' FSTs (flanking sequence tags) and the sequence of the
pre-insertion locus (locus in the corn genome where the transgene
was inserted) have been determined.
The maize genomic sequences flanking the T-DNA insertion in event
VCO-O1981-5 were obtained by Genome Walker.TM. (Clontech) (5'FST)
and direct PCR (3'FST). Using the DNA sequences generated, a BLAST
search (Altschul et al., 1997) was performed against the Maize
Genetics and Genomics Database (Lawrence et al., 2004). Both the 5'
and 3' FST sequences mapped to chromosome 1.
700 bp were obtained for the 5' FST and 700 bp for the 3' FST. The
enzyme SspI was used for generating the library. The T-DNA specific
primers used are listed in the following Table 1.
TABLE-US-00003 TABLE 1 SEQ Primer 5'-->3' sequence ID 3'FST
Ace5-1 ACAGGATCGCTATGGCGTTTTCAATCC 17 Ace5-2
ATGCGTCGGGAAGACCTTTCCTGGCTTC 18 O39 CACCAGGGAGGAGGCAACAACAAGTAG 19
5'FST Scubi-NewR AGAAAGAGTCCCGTGAGGCTACGGCAC 20 Scubi2-Rev
CTGGGATTTGGATGGATGAGGCAAGGAG 21 Scubi1-Rev
AGAGGTCGCCGCGGAGATATCGAGGAG 22
The insertion site could be mapped using a BLAST search against the
Maize Genetics and Genomics Database (http://www.maizegdb.org/). It
is located in the chromosome 1, more precisely on the BAC:
AC185611.
To confirm the FST result, primers were deduced from the sequence
obtained by the Genome Walker strategy and used to directly amplify
the 5' and 3' FST sequence from Hi-II and VCO-O1981-5 (6981). The
expected PCR products were obtained and sequenced. The sequences
obtained were found identical as the one obtained from the Genome
Walker which is thus considered as accurate.
The Map of inserted T-DNA, gene construct of the invention flanked
with the right and left border and the flanking sequences (SEQ ID
NO: 9 and SEQ ID NO: 10) is described on FIG. 4.
The 3' flanking sequence (SEQ ID NO: 9) has the following
sequence:
TABLE-US-00004 gttctcagagggagatgggcggcaagggcggcgggggtggtggcaagggc
ggcggcgggggtggtggcaagggcggaggaggttttggtggcaagagcgg
cggcgggggtggtggcaagggcggaggaggtgttggtggcaagagcggcg
gcggcaagtcaggcggcggcggcggtgggggctatggtggtggagggaag
tcaggctccggcggcagtggcggcgacggaatgatgaaggcgcccggcgg
cagtggcgagtacatctcccgctctgtcttcgaggccagcccgcaggtgt
tcttccatggcctccaccagggaggaggcaacaacaagtagatccatcta
gctagactgctgctgctacttcacaagcttgggacgatgtgtgatcatgc
atgcttggactggcatcagtctctatgtagcttctgaataaaataaaatg
taacgatgctcgattgtgtttcacttgctcgcttgtttcagccaagttat
tatatatcatcaggctcgtacgtcagctatatatatatatatatatatat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatacacacacacacatatgcaggtgcatggattgtgca
acgcgaatgtgtgattgtgctaatccgttagttgatgccgtttgttgctt
The 5' flanking sequence (SEQ ID NO: 10) has the following
sequence:
TABLE-US-00005 tttcctcattttctttttcccgcttttgtttcaatttttcttgggtaatg
tacagtgagtatattttttcttgttctttttctcatggccaaaatccaca
atggatcgatgaattagctgtcgttgttgccaacaacaacaacagaacaa
aatcacgtgacgtactagcacaatgcaagtagccaaactgagcttccggg
caccgacgaacggttgcacgccatcggcgggaaggaacaggccgggctgt
caatggacaaacgggccgccaagctggagggagtgtcatgggctttgaga
accatcgtcagggtccagtttattcttttgtttttattaaaggcggtaaa
ctcggggaacgaatatactaggaaaaacactagccagtcagagtcagtca
aagtggactgagttaaaattgcaacgacacacacgcagcagtcagggcgt
cgggaatgaacaatggatgaatttattataatctgaagaaaacgaaggga
cacagccactacgaacactggggagtggggagtgaatgaatgaatgcatt
ccactggaccgttccagcgcttcgtgtgcctcgctagatgcgctgaacac
tcgaacgccatggacctcgctccgctctctatatatagagggaaggcctt
cagtctactcctcgggatataccactgaacgtcaccaagaagatcagtac
Additionally, the entire T-DNA insert in event VCO-O1981-5 was
sequenced and verified to be identical to that in transformation
vector pAG3541. During the transformation integration process, the
right and left border sequences do not typically remain intact and
minor deletions in both were identified in event VCO-O1981-5.
A complete sequence comprising the entire T-DNA insert sequence and
the flanking genomic sequence is listed as SEQ ID NO: 3.
V. Inheritance of the Glyphosate Tolerant Trait
During performance evaluation of event VCO-O1981-5, the locus
containing epsps grg23ace5 was crossed with 3 inbred lines (B110,
B109, AAX3). Progeny plants for each line were then sprayed with
glyphosate to identify plants that inherited and expressed epsps
grg23ace5 and assess the segregation ratio into each of the lines.
The progenitor line for testing was generated by pollinating line
B110 with the parental T0 plant for event VCO-O1981-5, which
yielded a BC0 line (B110.times.VCO-O1981-5). These BC0 seeds were
germinated and plants were crossed simultaneously with lines B110,
B109 and AAX3. Segregation analysis was carried out in the
following generation for the B110 and B109 crosses, and in the next
4 generations for line AAX3 (FIG. 5).
All glyphosate sprays were carried out at either 1.times.,
4.times., or 8.times. the spray rate in outdoor field plots
(1.times. was 540 g of glyphosate, acid form/ha). Positive
segregants that survived the spray were scored as "tolerant", while
negative segregants did not survive the spray and were scored as
"sensitive".
TABLE-US-00006 TABLE 2 CHI Generation Gly. Obs. Obs. Exp. Exp. test
(line) No S.R. Tol. Sens. Tol. Sens. % Tol. value BC1 9 4x 7 2 4.5
4.5 77.8% 0.096 (B110) BC1 7 8x 2 5 3.5 3.5 28.6% 0.257 (B110) BC0
10 4x 5 5 5 5 50.0% 1.000 (B109) BC0 11 8x 5 6 5.5 5.5 45.5% 0.763
(B109) BC0 28 1x 12 16 14 14 42.9% 0.450 (AAX3) BC1 227 1x 100 127
113.5 113.5 44.1% 0.073 (AAX3) BC2 58 1x 29 29 29 29 50.0% 1.000
(AAX3) BC3 74 1x 38 36 37 37 51.4% 0.816 (AAX3) Abbreviations:
Gen.: Generation; No: Number of plants; Gly. S.R.: glyphosate spray
rate; Obs. Tol: observed tolerant; Obs. Sens.: observed sensitive;
Exp. Tol.: expected tolerant; Obs. Tol: expected sensitive; % Tol.:
% Tolerant.
All plants were evaluated two weeks after spraying. A segregation
ratio of 1:1 was expected in each generation because epsps
grg23ace5 is present at single and hemizygous copy in the donor
parental line crossed with the lines B109, B110 or AAX3.
Observed segregation patterns were compared to the expected
patterns and these data were compared using a chi-squared (X.sup.2)
distribution analysis, as follows:
X.sup.2=.SIGMA.[(|o-e|).sup.2/e], where o=observed frequency of
tolerance, and e=expected frequency of tolerance.
A chi-square value of .gtoreq.0.05 was treated as the cutoff for
statistical support of a 1:1 segregation in each generation, and
this value was exceeded for each of the segregation analysis
groups. The results of this analysis are consistent with the
inheritance of a single copy of epsps grg23ace5 into each of the
inbred lines tested (B110, B109, AAX3).
Transformation event VCO-O1981-5 contains a single genetic
insertion of the epsps grg23ace5 gene, and that gene is inherited
through successive breeding generations in the predictable
Mendelian fashion.
VI. Method of Detection of the VCO-O1981-5 Event:
This example describes an event-specific real-time quantitative
TaqMan PCR method for determination of the relative content of
event VCO-O1981-5 DNA to total maize (Zea mays) DNA in a biological
sample.
The PCR assay has been optimized for use in an ABI Prism.RTM. 7900
sequence detection system.
For specific detection of event VCO-O1981-5 genomic DNA, a 85-bp
fragment of the region that spans the 5' TDNA insert and flanking
genomic junction in maize event VCO-O1981-5, is amplified using two
specific primers. PCR products are measured during each cycle
(real-time) by means of a target-specific oligonucleotide probe
labelled with a fluorescent dye: FAM as a reporter dye at its 5'
end and MGBmolecule as a quencher at its 3' end. The 5'-nuclease
activity of the Taq DNA polymerase is exploited, which results in
the specific cleavage of the probe, leading to increased
fluorescence, which is then monitored. For relative quantification
of event VCO-O1981-5 DNA, a maize specific reference system
amplifies a 70-bp fragment of aldolase (Kelley et al., 1986), a
maize endogenous sequence, using a pair of aldolase gene-specific
primers and an aldolase gene-specific probe labelled with VIC and
TAMRA.
Two types of quantification are simultaneously performed in this
method: one for the endogenous gene aldolase and one for the event
VCO-O1981-DNA region. The following sets of primers and probes are
used.
TABLE-US-00007 TABLE 3 Sequence (5' to 3') VCO-O1981-5 primer F
Ccactgaacgtcaccaagaaga (SEQ ID NO: 11) VCO-O1981-5 primer R
Gccgctactcgagggattta (SEQ ID NO: 12) VCO-O1981-5 probe
6-FAM-cagtactcaaacactgatag- MGB (SEQ ID NO: 13) Aldolase primer F
Agggaggacgcctccct (SEQ ID NO: 14) Aldolase primer R
Accctgtaccagaagaccaagg (SEQ ID NO: 15) Aldolase probe
6-VIC-tgaggacatcaacaaaagg cttgcca-TAMRA (SEQ ID NO: 16)
The master-mix for the aldolase reference gene system is prepared
as followed in Table 4:
TABLE-US-00008 TABLE 4 Final concentration in Component PCR
.mu.l/reaction TaqMan .RTM. Universal Master Mix 2X 1x 12.5 Primer
F (5 .mu.M) 300 nM 1.5 Primer R (5 .mu.M) 300 nM 1.5 Probe (5
.mu.M) 200 nM 1.0 Nuclease free water # 6.0 Template DNA (maximum
200 ng) # 2.5 Total volume: 25 .mu.l
The master-mix for VCO-O1981-5 event is prepared as followed in
Table 5:
TABLE-US-00009 TABLE 5 Final concentration in Component PCR
.mu.l/reaction TaqMan .RTM. Universal Master Mix 2X 1x 12.5 Primer
F (5 .mu.M) 300 nM 1.5 Primer R (5 .mu.M) 300 nM 1.5 Probe (5
.mu.M) 200 nM 1.0 Nuclease free water # 6.0 Template DNA (maximum
200 ng) # 2.5 Total volume: 25 .mu.l
Run the PCR with cycling conditions listed below for both
VCO-O1981-5 event and aldolase assays in the Applied Biosystems
7900 system.
TABLE-US-00010 TABLE 6 Data Step Stage T .degree. C. Time (sec)
collection Cycles 1 Uracil-DNA-N Glycosylase (UNG) 50.degree. C.
120'' no 1x 2 Initial denaturation 95.degree. C. 600'' no 1x 3
Amplification Denaturation 95.degree. C. 15'' no 40x Annealing
& 60.degree. C. 60'' yes Extension
VII. Evaluation of Agronomic Performance of Event VCO-O1981-5
In order to evaluate agronomic performance characteristics of event
VCO-O1981-5 as compared to an appropriate negative isoline, two
experimental varieties were produced and seed used for multiple
location evaluation. The experimental varieties are hybrid maize
obtained by crossing the event VCO-O1981-5 (BC2S2) with two
different lines (B116 and CH01). Negative segregants crossed with
the lines B116 and CH01 were used as comparators (see table 5 and
FIG. 3 for breeding diagram).
TABLE-US-00011 TABLE 7 Maize hybrids tested in agronomic
evaluations. Line Tested Pedigree VCO-O1981-5 (A) BC0S2 VCO-O1981-5
.times. B116 Control: Negative isoline (A) BC0S2 null .times. B116
VCO-O1981-5 (B) BC0S2 VCO-O1981-5 .times. CH01 Control: Negative
isoline (B) BC0S2 null .times. CH01
These hybrids were characterized under diverse environmental and
growing conditions similar to those used in maize production. The
study was conducted using a Randomized Complete Block design with
three replications (plots) of each entry per location. Each plot
consisted of four, 30-inch rows by 17.5 to 20 ft. long. Plants were
thinned prior to reaching the V8 leaf stage resulting in a uniform
number of plants in each row. Weeds outside of the plots (in
alleyways and borders) managed as to not confound measures of
agronomic characteristics. Weeds within the plots were managed by
conventional herbicides and cultural practices (hand hoeing). No
broad spectrum herbicides were applied to the study or borders rows
except as a pre-plant or pre-emergence application. Data on all
traits was collected on the middle two rows of each four row plot.
Data collected over season is summarized in Tables 8 and 9.
TABLE-US-00012 TABLE 8 Agronomic performance results-vegetative
characteristics Agronomic VCO- Number Number Characteristic Genetic
O1981- of of (unit) Background 5 Corn plants Control plants Plant
height B116 116.9 49 113.5 44 Mean (inches) 32.0- 36-72 26.7- 27-72
Range 136.5 138.5 0.7918 0.0067 0.0067 p-value CH01 110.4 48 106.8
46 Mean 32.7- 36-72 21.7- 31-72 Range 124.8 130.7 0.7632 0.01797
0.01797 p-value Grain weight B116 19.5 49 18.2 44 Mean (pounds per
3.8-27.0 36-72 4.0-37.4 27-72 Range plot) 0.2292 0.0067 0.0067
p-value CH01 19.9 48 18.8 46 Mean 6.0-30.6 36-72 2.0-31.1 31-72
Range 0.3662 0.01797 0.01797 p-value
TABLE-US-00013 TABLE 9 Agronomic performance results - reproductive
parameters Genetic Agronomic Background Characteristic (same as in
VCO-O1981-5 (unit) Table 8) Corn Control Days to 50% B116 72.6 73.3
Mean pollen shed 59-95 59-94 Range (# days) 0.6978 p-value CH01
72.3 72.9 Mean 57-93 56-94 Range 0.7365 p-value Days to 50% B116
74.6 75.0 Mean silking 59-97 59-95 Range (# days) 0.8087 p-value
CH01 72.6 72.8 Mean 57-96 56-96 Range 0.9003 p-value Yield B116
143.0 130.7 Mean (bushel per 35.6-218.9 26.5-228.7 Range acre)
0.1584 p-value CH01 150.4 138.6 Mean 52.4-259.7 18.3-222.1 Range
0.1896 p-value
REFERENCES
Basra A., 1999. Heterosis and Hybrid Seed Production in Agronomic
Crops (The Harwoth Press Inc.). Bernardo R., 2010. Breeding for
quantitative traits in plants (2.sup.nd ed, Stemma press.com).
Cheng, Z. M., Schnurr, J. A. and Kapaun, J. A., 1998. Timentin as
an alternative antibiotic for suppression of Agrobacterium
tumefaciens in genetic transformation. Plant Cell Reports. 646-649.
De la Riva, G. A., Gonzalez-Cabrera, J., Vazquez-Padron, R., and
Ayra-Pardo, C., 1998. Agrobacterium tumefaciens: A Natural Tool for
Plant Transformation. Elec. J. of Biotech., 1, 118-133. Dellaporta
S. L., Wood, J. and. Hicks, J. B., 1983. A plant DNA
minipreparation: version II Plant Molecular Biology Reporter, 1,
19-21. Depicker, A., Stachel, S., Dhaese, P., Zambryski, P., and
Goodman, H. M. J., 1982. Molecular Applied Genetics, 1, 561-574.
EFSA journal "Guidance for risk assessment of food and feed
genetically modified plant, 2011; 9(5): 2150, p 10). Fang, L.,
Gross, P., Chen, C. and Lillis, M., 1992. Sequence of two
acetohydroxyacid synthase genes from Zea mays, Plant Molecular
Biology, 18, 1185-1187. Freeling M. and Walbot V., 1994. The Maize
Handbook, Springer Lab Manuals. Gardner, R., Howarth, A., Hahn, P.,
Brown-Luedi, M., Shepherd, R., and Messing, J., 1981. The complete
nucleotide sequence of an infectious clone of cauliflower mosaic
virus by M13mp7 shotgun sequencing, Nucleic Acids Research, 9,
2871-2888. Gelvin, S. B. 2005. Agricultural biotechnology: Gene
exchange by Design. Nature 433, 583-584. Hallauer A. and Miranda J.
B., 1988. Quantitative genetics in maize breeding. 2nd edition,
Iowa State University press. Kelley P. M. and Tolan D. R., 1986.
The complete amino acid sequence for the anaerobically induced
aldolase from maize derived from cDNA clones. Plant Physiol. 82,
1076-1080. Komari, T., Hiei, Y., Saito, Y., Mural, N., and
Kumashiro, T. 1996. Vectors carrying two separate T-DNAs for
co-transformation of higher plants mediated by Agrobacterium
tumefaciens and segregation of transformants free from selection
markers. Plant J 10:165-174. Lawrence C. J., Dong Q., Polacco M.
L., Seigfried T. E., Brendel V., 2004. Maize GDB, the community
database for maize genetics and genomics. Nucleic Acids Res. 32.
Database issue D393-D397. Otten, L., Salomone, J. Y., Helfer, A.,
Schmidt, J., Hammann, P. and De Ruffray, P. 1999 Sequence and
functional analysis of the left-hand part of the T-region from the
nopaline-type Ti plasmid, pTiC58 Plant Mol. Biol. 41 (6), 765-776.
Pena L., 2005. Transgenic Plants: Methods and Protocols. Methods in
Molecular Biology, Vol 286 Humana Press Inc. Sambrook, J., Fritsch,
E. F., and Maniatis T., 1989. Molecular Cloning, A Laboratory
Manual. Second edition. Cold Spring Harbor Laboratory Press.
SEQUENCE LISTINGS
1
23124DNAartificialminimal sequence junction in 5' 1ccaagaagat
cagtactcaa acac 24225DNAartificialminimal sequence junction in 3'
2tttacaccgt tctcagaggg agatg 2535092DNAartificialtotal sequence of
the T-DNA insert and the flanking genomic sequence 3tttcctcatt
ttctttttcc cgcttttgtt tcaatttttc ttgggtaatg tacagtgagt 60atattttttc
ttgttctttt tctcatggcc aaaatccaca atggatcgat gaattagctg
120tcgttgttgc caacaacaac aacagaacaa aatcacgtga cgtactagca
caatgcaagt 180agccaaactg agcttccggg caccgacgaa cggttgcacg
ccatcggcgg gaaggaacag 240gccgggctgt caatggacaa acgggccgcc
aagctggagg gagtgtcatg ggctttgaga 300accatcgtca gggtccagtt
tattcttttg tttttattaa aggcggtaaa ctcggggaac 360gaatatacta
ggaaaaacac tagccagtca gagtcagtca aagtggactg agttaaaatt
420gcaacgacac acacgcagca gtcagggcgt cgggaatgaa caatggatga
atttattata 480atctgaagaa aacgaaggga cacagccact acgaacactg
gggagtgggg agtgaatgaa 540tgaatgcatt ccactggacc gttccagcgc
ttcgtgtgcc tcgctagatg cgctgaacac 600tcgaacgcca tggacctcgc
tccgctctct atatatagag ggaaggcctt cagtctactc 660ctcgggatat
accactgaac gtcaccaaga agatcagtac tcaaacactg atagtttaaa
720ctgaagaagc ttaatttaaa tccctcgagt agcggccgct agcccgggca
tagcttaatt 780cattatgtgg tctaggtagg ttctatatat aagaaaactt
gaaatgttct aaaaaaaaat 840tcaagcccat gcatgattga agcaaacggt
atagcaacgg tgttaacctg atctagtgat 900ctcttgcaat ccttaacggc
cacctaccgc aggtagcaaa cggcgtcccc ctcctcgata 960tctccgcggc
gacctctggc tttttccgcg gaattgcgcg gtggggacgg attccacgag
1020accgcgacgc aaccgcctct cgccgctggg ccccacaccg ctcggtgccg
tagcctcacg 1080ggactctttc tccctcctcc cccgttataa attggcttca
tcccctcctt gcctcatcca 1140tccaaatccc agtccccaat cccatccctt
cgtcggagaa attcatcgaa gcgaagcgaa 1200tcctcgcgat cctctcaagg
tactgcgagt tttcgatccc cctctcgacc cctcgtatgt 1260ttgtgtttgt
cgtagcgttt gattaggtat gctttccctg tttgtgttcg tcgtagcgtt
1320tgattaggta tgctttccct gttcgtgttc atcgtagtgt ttgattaggt
cgtgtgaggc 1380gatggcctgc tcgcgtcctt cgatctgtag tcgatttgcg
ggtcgtggtg tagatctgcg 1440ggctgtgatg aagttatttg gtgtgatctg
ctcgcctgat tctgcgggtt ggctcgagta 1500gatatgatgg ttggaccggt
tggttcgttt accgcgctag ggttgggctg ggatgatgtt 1560gcatgcgccg
ttgcgcgtga tcccgcagca ggacttgcgt ttgattgcca gatctcgtta
1620cgattatgtg atttggtttg gactttttag atctgtagct tctgcttatg
tgccagatgc 1680gcctactgct catatgcctg atgataatca taaatggctg
tggaactaac tagttgattg 1740cggagtcatg tatcagctac aggtgtaggg
actagctaca ggtgtaggga cttgcgtcta 1800attgtttggt cctttactca
tgttgcaatt atgcaattta gtttagattg tttgttccac 1860tcatctaggc
tgtaaaaggg acactgctta gattgctgtt taatcttttt agtagattat
1920attatattgg taacttatta cccctattac atgccatacg tgacttctgc
tcatgcctga 1980tgataatcat agatcactgt ggaattaatt agttgattgt
tgaatcatgt ttcatgtaca 2040taccacggca caattgctta gttccttaac
aaatgcaaat tttactgatc catgtatgat 2100ttgcgtggtt ctctaatgtg
aaatactata gctacttgtt agtaagaatc aggttcgtat 2160gcttaatgct
gtatgtgcct tctgctcatg cctgatgata atcatatatc actggaatta
2220attagttgat cgtttaatca tatatcaagt acataccatg gcacaatttt
tagtcactta 2280acccatgcag attgaactgg tccctgcatg ttttgctaaa
ttgttctatt ctgattagac 2340catatatcat gtattttttt ttggtaatgg
ttctcttatt ttaaatgcta tatagttctg 2400gtacttgtta gaaagatctg
cttcatagtt tagttgccta tccctcgaat taggatgctg 2460agcagctgat
cctatagctt tgtttcatgt atcaattctt ttgtgttcaa cagtcagttt
2520ttgttagatt cattgtaact tatggtcgct tactcttctg gtcctcaatg
cttgcagctg 2580cagaccatgg ccaccgccgc cgccgcgtct accgcgctca
ctggcgccac taccgctgcg 2640cccaaggcga ggcgccgggc gcacctcctg
gccacccgcc gcgccctcgc cgcgcccatc 2700aggtgctcag cggcgtcacc
cgccatgccg atggctcccc cggccacccc gctccggccg 2760tggggcccca
ccgatccccg caagggatcc ggcatggaaa ctgatcgcct tgtgatccca
2820ggatcgaaaa gcatcaccaa ccgggctttg cttttggctg ccgcagcgaa
gggcacgtcg 2880gtcctggtga gaccattggt cagcgccgat acctcagcat
tcaaaactgc aatccaggcc 2940ctcggtgcca acgtctcagc cgacggtgac
gattgggtcg ttgaaggcct gggtcaggca 3000cccaacctcg acgccgacat
ctggtgcgag gacgcaggta ctgtggcccg gttcctccct 3060ccattcgtag
ccgcaggtca ggggaagttc accgtcgacg gatcagagca gctgcggcgg
3120cgcccgcttc ggcccgtggt cgacggcatc cgccacctgg gcgcccgcgt
ctcctccgag 3180cagctgcccc ttacaattga agcgagcggg ctggcaggcg
gggagtacga aattgaagcc 3240catcagagca gccagttcgc ctccggcctg
atcatggccg ccccgtacgc gagacaaggc 3300ctgcgtgtga agataccaaa
tcccgtgtca cagccctacc tcacgatgac actgcggatg 3360atgagggact
tcggcattga gaccagcacc gacggagcca ccgtcagcgt ccctccaggg
3420cgctacacag cccggcggta tgaaatagaa ccggatgcgt caactgcgtc
gtacttcgcc 3480gccgcttccg ccgtctctgg caggcgcttc gaatttcaag
gccttggcac agacagcatc 3540caaggcgaca cgtcattctt caatgtactt
gggcggctcg gtgcggaggt ccactgggca 3600tccaactcgg tcaccatacg
gggaccggaa aggctgaccg gcgacattga agtggatatg 3660ggcgagattt
cggacacctt catgacactc gcggcgattg cccctttggc cgatggaccc
3720atcacgataa ccaacattgg tcatgcacgg ttgaaggaat ccgaccgcat
ctcagcgatg 3780gaaagcaacc tgcgcacgct cggtgtacaa accgacgtcg
gacacgactg gatgagaatc 3840tacccctcta ccccgcacgg cggtagagtg
aattgccacc gggaccacag gatcgctatg 3900gcgttttcaa tcctgggact
gagagtggac gggattaccc tcgacgaccc tcaatgcgtc 3960gggaagacct
ttcctggctt cttcgactac cttggacgcc ttttccccga aaaggcgctt
4020acgctccccg gctagggcgc gcctccttcg caagaccctt cctctatata
aggaagttca 4080tttcatttgg agaggacacg ctgaaatcac cagtctctct
ctacaaatct atctctctct 4140attttctcca taataatgtg tgagtagttc
ccagataagg gaattagggt tcttataggg 4200tttcgctcac gtgttgagca
tataagaaac ccttagtatg tatttgtatt tgtaaaatac 4260ttctatcaat
aaaatttcta attcctaaaa ccaaaatcca gtactaaaat ccactcgaga
4320cgcgtgaatt cagtacatta aaaacgtccg caatgtgtta ttaagttgtc
taagcgtcaa 4380tttgtttaca ccgttctcag agggagatgg gcggcaaggg
cggcgggggt ggtggcaagg 4440gcggcggcgg gggtggtggc aagggcggag
gaggttttgg tggcaagagc ggcggcgggg 4500gtggtggcaa gggcggagga
ggtgttggtg gcaagagcgg cggcggcaag tcaggcggcg 4560gcggcggtgg
gggctatggt ggtggaggga agtcaggctc cggcggcagt ggcggcgacg
4620gaatgatgaa ggcgcccggc ggcagtggcg agtacatctc ccgctctgtc
ttcgaggcca 4680gcccgcaggt gttcttccat ggcctccacc agggaggagg
caacaacaag tagatccatc 4740tagctagact gctgctgcta cttcacaagc
ttgggacgat gtgtgatcat gcatgcttgg 4800actggcatca gtctctatgt
agcttctgaa taaaataaaa tgtaacgatg ctcgattgtg 4860tttcacttgc
tcgcttgttt cagccaagtt attatatatc atcaggctcg tacgtcagct
4920atatatatat atatatatat atatatatat atatatatat atatatatat
atatatatat 4980atatatatat atatatatat atatatacac acacacacat
atgcaggtgc atggattgtg 5040caacgcgaat gtgtgattgt gctaatccgt
tagttgatgc cgtttgttgc tt 50924364DNASaccharum officinarum
4aattcattat gtggtctagg taggttctat atataagaaa acttgaaatg ttctaaaaaa
60aaattcaagc ccatgcatga ttgaagcaaa cggtatagca acggtgttaa cctgatctag
120tgatctcttg caatccttaa cggccaccta ccgcaggtag caaacggcgt
ccccctcctc 180gatatctccg cggcgacctc tggctttttc cgcggaattg
cgcggtgggg acggattcca 240cgagaccgcg acgcaaccgc ctctcgccgc
tgggccccac accgctcggt gccgtagcct 300cacgggactc tttctccctc
ctcccccgtt ataaattggc ttcatcccct ccttgcctca 360tcca
36451358DNASaccharum officinarum 5gtactgcgag ttttcgatcc ccctctcgac
ccctcgtatg tttgtgtttg tcgtagcgtt 60tgattaggta tgctttccct gtttgtgttc
gtcgtagcgt ttgattaggt atgctttccc 120tgttcgtgtt catcgtagtg
tttgattagg tcgtgtgagg cgatggcctg ctcgcgtcct 180tcgatctgta
gtcgatttgc gggtcgtggt gtagatctgc gggctgtgat gaagttattt
240ggtgtgatct gctcgcctga ttctgcgggt tggctcgagt agatatgatg
gttggaccgg 300ttggttcgtt taccgcgcta gggttgggct gggatgatgt
tgcatgcgcc gttgcgcgtg 360atcccgcagc aggacttgcg tttgattgcc
agatctcgtt acgattatgt gatttggttt 420ggacttttta gatctgtagc
ttctgcttat gtgccagatg cgcctactgc tcatatgcct 480gatgataatc
ataaatggct gtggaactaa ctagttgatt gcggagtcat gtatcagcta
540caggtgtagg gactagctac aggtgtaggg acttgcgtct aattgtttgg
tcctttactc 600atgttgcaat tatgcaattt agtttagatt gtttgttcca
ctcatctagg ctgtaaaagg 660gacactgctt agattgctgt ttaatctttt
tagtagatta tattatattg gtaacttatt 720acccctatta catgccatac
gtgacttctg ctcatgcctg atgataatca tagatcactg 780tggaattaat
tagttgattg ttgaatcatg tttcatgtac ataccacggc acaattgctt
840agttccttaa caaatgcaaa ttttactgat ccatgtatga tttgcgtggt
tctctaatgt 900gaaatactat agctacttgt tagtaagaat caggttcgta
tgcttaatgc tgtatgtgcc 960ttctgctcat gcctgatgat aatcatatat
cactggaatt aattagttga tcgtttaatc 1020atatatcaag tacataccat
ggcacaattt ttagtcactt aacccatgca gattgaactg 1080gtccctgcat
gttttgctaa attgttctat tctgattaga ccatatatca tgtatttttt
1140tttggtaatg gttctcttat tttaaatgct atatagttct ggtacttgtt
agaaagatct 1200gcttcatagt ttagttgcct atccctcgaa ttaggatgct
gagcagctga tcctatagct 1260ttgtttcatg tatcaattct tttgtgttca
acagtcagtt tttgttagat tcattgtaac 1320ttatggtcgc ttactcttct
ggtcctcaat gcttgcag 13586198DNAZea mays 6atggccaccg ccgccgccgc
gtctaccgcg ctcactggcg ccactaccgc tgcgcccaag 60gcgaggcgcc gggcgcacct
cctggccacc cgccgcgccc tcgccgcgcc catcaggtgc 120tcagcggcgt
cacccgccat gccgatggct cccccggcca ccccgctccg gccgtggggc
180cccaccgatc cccgcaag 19871242DNAArthrobacter globiformis
7atggaaactg atcgccttgt gatcccagga tcgaaaagca tcaccaaccg ggctttgctt
60ttggctgccg cagcgaaggg cacgtcggtc ctggtgagac cattggtcag cgccgatacc
120tcagcattca aaactgcaat ccaggccctc ggtgccaacg tctcagccga
cggtgacgat 180tgggtcgttg aaggcctggg tcaggcaccc aacctcgacg
ccgacatctg gtgcgaggac 240gcaggtactg tggcccggtt cctccctcca
ttcgtagccg caggtcaggg gaagttcacc 300gtcgacggat cagagcagct
gcggcggcgc ccgcttcggc ccgtggtcga cggcatccgc 360cacctgggcg
cccgcgtctc ctccgagcag ctgcccctta caattgaagc gagcgggctg
420gcaggcgggg agtacgaaat tgaagcccat cagagcagcc agttcgcctc
cggcctgatc 480atggccgccc cgtacgcgag acaaggcctg cgtgtgaaga
taccaaatcc cgtgtcacag 540ccctacctca cgatgacact gcggatgatg
agggacttcg gcattgagac cagcaccgac 600ggagccaccg tcagcgtccc
tccagggcgc tacacagccc ggcggtatga aatagaaccg 660gatgcgtcaa
ctgcgtcgta cttcgccgcc gcttccgccg tctctggcag gcgcttcgaa
720tttcaaggcc ttggcacaga cagcatccaa ggcgacacgt cattcttcaa
tgtacttggg 780cggctcggtg cggaggtcca ctgggcatcc aactcggtca
ccatacgggg accggaaagg 840ctgaccggcg acattgaagt ggatatgggc
gagatttcgg acaccttcat gacactcgcg 900gcgattgccc ctttggccga
tggacccatc acgataacca acattggtca tgcacggttg 960aaggaatccg
accgcatctc agcgatggaa agcaacctgc gcacgctcgg tgtacaaacc
1020gacgtcggac acgactggat gagaatctac ccctctaccc cgcacggcgg
tagagtgaat 1080tgccaccggg accacaggat cgctatggcg ttttcaatcc
tgggactgag agtggacggg 1140attaccctcg acgaccctca atgcgtcggg
aagacctttc ctggcttctt cgactacctt 1200ggacgccttt tccccgaaaa
ggcgcttacg ctccccggct ag 12428270DNACauliflower mosaic virus
8tccttcgcaa gacccttcct ctatataagg aagttcattt catttggaga ggacacgctg
60aaatcaccag tctctctcta caaatctatc tctctctatt ttctccataa taatgtgtga
120gtagttccca gataagggaa ttagggttct tatagggttt cgctcacgtg
ttgagcatat 180aagaaaccct tagtatgtat ttgtatttgt aaaatacttc
tatcaataaa atttctaatt 240cctaaaacca aaatccagta ctaaaatcca
2709700DNAartificialflanking 5' genomic sequence 9gttctcagag
ggagatgggc ggcaagggcg gcgggggtgg tggcaagggc ggcggcgggg 60gtggtggcaa
gggcggagga ggttttggtg gcaagagcgg cggcgggggt ggtggcaagg
120gcggaggagg tgttggtggc aagagcggcg gcggcaagtc aggcggcggc
ggcggtgggg 180gctatggtgg tggagggaag tcaggctccg gcggcagtgg
cggcgacgga atgatgaagg 240cgcccggcgg cagtggcgag tacatctccc
gctctgtctt cgaggccagc ccgcaggtgt 300tcttccatgg cctccaccag
ggaggaggca acaacaagta gatccatcta gctagactgc 360tgctgctact
tcacaagctt gggacgatgt gtgatcatgc atgcttggac tggcatcagt
420ctctatgtag cttctgaata aaataaaatg taacgatgct cgattgtgtt
tcacttgctc 480gcttgtttca gccaagttat tatatatcat caggctcgta
cgtcagctat atatatatat 540atatatatat atatatatat atatatatat
atatatatat atatatatat atatatatat 600atatatatat atatacacac
acacacatat gcaggtgcat ggattgtgca acgcgaatgt 660gtgattgtgc
taatccgtta gttgatgccg tttgttgctt 70010700DNAartificialflanking 5'
genomic sequence 10atttcgagcg atttaagtat gcacagtata tagccttcat
atgcatttta ataatttctg 60tcaattatct actacgggaa ataaaagtag aaaaataaag
tccagaacta atgcatgaac 120atagcacatc aggtgtaaca agaattttac
catattcaag catgtatttt tgcactaatt 180atttgcgaca ggaaataatt
aatgaagata taaattgcga tagaaaaaca tgcttagttt 240tatttattat
ttgcatcatt aatcatgaaa tatcatagaa ttaataatag ggagcatgat
300tataaattta tataaattca gcaggaattt tatttatata aaaaaacaag
aataagatta 360gcaacttagt cgaattaaat caaaaaatgc taaggaggcg
ccattatcct atgtgcataa 420gcacgctatg gatcccatga ccgtagcctt
ttctgttgac cgcacatgca atatgaccat 480tgcatgcatg cacctcatgc
actttgactt tgactggatc ttttcttacg ttggttggat 540gaggtcgctg
cttatccgtg gcatgcagtg ccgcattcga agcgagcgga gggagagatt
600cggttttcgc tctctttccc gtatatcctt atcttcacga ctggttcaca
tgcgtggccg 660gctctggcgt tccacaccag gcatcttggc gtaggactcc
7001122DNAartificialVCO-01981-5 primer F 11ccactgaacg tcaccaagaa ga
221220DNAartificialVCO-01981-5 primer R 12gccgctactc gagggattta
201320DNAartificialVCO-01981-5 probe 13cagtactcaa acactgatag
201417DNAartificialAldolase primer F 14agggaggacg cctccct
171522DNAartificialAldolase primer R 15accctgtacc agaagaccaa gg
221626DNAartificialAldolase probe 16tgaggacatc aacaaaaggc ttgcca
261727DNAartificialprimer Ace5-1 17acaggatcgc tatggcgttt tcaatcc
271828DNAartificialprimer Ace5-2 18atgcgtcggg aagacctttc ctggcttc
281927DNAartificialprimer O39 19caccagggag gaggcaacaa caagtag
272027DNAartificialprimer Scubi-NewR 20agaaagagtc ccgtgaggct
acggcac 272128DNAartificialprimer Scubi2-Rev 21ctgggatttg
gatggatgag gcaaggag 282227DNAartificialScubi1-Rev 22agaggtcgcc
gcggagatat cgaggag 2723413PRTartificialprotein sequence GRG23ACE5
23Met Glu Thr Asp Arg Leu Val Ile Pro Gly Ser Lys Ser Ile Thr Asn 1
5 10 15 Arg Ala Leu Leu Leu Ala Ala Ala Ala Lys Gly Thr Ser Val Leu
Val 20 25 30 Arg Pro Leu Val Ser Ala Asp Thr Ser Ala Phe Lys Thr
Ala Ile Gln 35 40 45 Ala Leu Gly Ala Asn Val Ser Ala Asp Gly Asp
Asp Trp Val Val Glu 50 55 60 Gly Leu Gly Gln Ala Pro Asn Leu Asp
Ala Asp Ile Trp Cys Glu Asp 65 70 75 80 Ala Gly Thr Val Ala Arg Phe
Leu Pro Pro Phe Val Ala Ala Gly Gln 85 90 95 Gly Lys Phe Thr Val
Asp Gly Ser Glu Gln Leu Arg Arg Arg Pro Leu 100 105 110 Arg Pro Val
Val Asp Gly Ile Arg His Leu Gly Ala Arg Val Ser Ser 115 120 125 Glu
Gln Leu Pro Leu Thr Ile Glu Ala Ser Gly Leu Ala Gly Gly Glu 130 135
140 Tyr Glu Ile Glu Ala His Gln Ser Ser Gln Phe Ala Ser Gly Leu Ile
145 150 155 160 Met Ala Ala Pro Tyr Ala Arg Gln Gly Leu Arg Val Lys
Ile Pro Asn 165 170 175 Pro Val Ser Gln Pro Tyr Leu Thr Met Thr Leu
Arg Met Met Arg Asp 180 185 190 Phe Gly Ile Glu Thr Ser Thr Asp Gly
Ala Thr Val Ser Val Pro Pro 195 200 205 Gly Arg Tyr Thr Ala Arg Arg
Tyr Glu Ile Glu Pro Asp Ala Ser Thr 210 215 220 Ala Ser Tyr Phe Ala
Ala Ala Ser Ala Val Ser Gly Arg Arg Phe Glu 225 230 235 240 Phe Gln
Gly Leu Gly Thr Asp Ser Ile Gln Gly Asp Thr Ser Phe Phe 245 250 255
Asn Val Leu Gly Arg Leu Gly Ala Glu Val His Trp Ala Ser Asn Ser 260
265 270 Val Thr Ile Arg Gly Pro Glu Arg Leu Thr Gly Asp Ile Glu Val
Asp 275 280 285 Met Gly Glu Ile Ser Asp Thr Phe Met Thr Leu Ala Ala
Ile Ala Pro 290 295 300 Leu Ala Asp Gly Pro Ile Thr Ile Thr Asn Ile
Gly His Ala Arg Leu 305 310 315 320 Lys Glu Ser Asp Arg Ile Ser Ala
Met Glu Ser Asn Leu Arg Thr Leu 325 330 335 Gly Val Gln Thr Asp Val
Gly His Asp Trp Met Arg Ile Tyr Pro Ser 340 345 350 Thr Pro His Gly
Gly Arg Val Asn Cys His Arg Asp His Arg Ile Ala 355 360 365 Met Ala
Phe Ser Ile Leu Gly Leu Arg Val Asp Gly Ile Thr Leu Asp 370 375 380
Asp Pro Gln Cys Val Gly Lys Thr Phe Pro Gly Phe Phe Asp Tyr Leu 385
390 395 400 Gly Arg Leu Phe Pro Glu Lys Ala Leu Thr Leu Pro Gly 405
410
* * * * *
References